Query 002477
Match_columns 917
No_of_seqs 472 out of 3715
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2047 mRNA splicing factor [ 100.0 3E-170 7E-175 1357.9 80.7 828 1-880 1-833 (835)
2 KOG1915 Cell cycle control pro 100.0 5.4E-47 1.2E-51 395.2 53.8 481 45-635 58-551 (677)
3 KOG0495 HAT repeat protein [RN 100.0 1.2E-42 2.6E-47 375.0 64.3 616 14-776 272-894 (913)
4 KOG1915 Cell cycle control pro 100.0 3.2E-40 7E-45 344.6 51.3 508 87-809 58-602 (677)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-35 1E-39 368.7 80.3 693 13-796 145-863 (899)
6 KOG2047 mRNA splicing factor [ 100.0 1E-36 2.2E-41 329.2 50.7 540 12-675 45-709 (835)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-34 4.7E-39 362.7 78.5 670 14-794 214-895 (899)
8 KOG0495 HAT repeat protein [RN 100.0 1.9E-34 4.1E-39 311.7 61.5 578 16-740 308-892 (913)
9 PRK11447 cellulose synthase su 100.0 5.3E-29 1.1E-33 317.4 68.5 598 80-796 40-737 (1157)
10 PRK11447 cellulose synthase su 100.0 4.4E-28 9.5E-33 309.0 70.9 638 15-757 50-735 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.6E-28 3.5E-33 264.3 38.9 435 105-732 51-490 (966)
12 KOG4626 O-linked N-acetylgluco 100.0 2.9E-28 6.4E-33 262.3 31.8 372 378-796 109-482 (966)
13 PRK09782 bacteriophage N4 rece 100.0 2.6E-23 5.5E-28 253.7 70.1 653 38-796 56-737 (987)
14 KOG2002 TPR-containing nuclear 100.0 4.6E-24 9.9E-29 242.5 56.8 619 41-777 109-760 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 4.4E-22 9.6E-27 242.9 68.0 621 13-757 64-735 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 5.6E-23 1.2E-27 246.6 51.7 263 436-730 307-574 (615)
17 KOG2002 TPR-containing nuclear 99.9 3.6E-22 7.9E-27 227.2 54.5 630 14-738 115-810 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 3E-22 6.5E-27 240.3 54.4 425 80-657 139-575 (615)
19 PLN03077 Protein ECB2; Provisi 99.9 1.5E-20 3.4E-25 234.3 63.9 321 386-756 355-680 (857)
20 PLN03077 Protein ECB2; Provisi 99.9 1.8E-20 3.8E-25 233.9 62.9 589 57-757 48-649 (857)
21 KOG1914 mRNA cleavage and poly 99.9 1.6E-21 3.5E-26 208.7 43.4 450 17-656 10-504 (656)
22 KOG1914 mRNA cleavage and poly 99.9 1.5E-20 3.2E-25 201.4 44.6 467 50-757 10-496 (656)
23 PRK15174 Vi polysaccharide exp 99.9 2.7E-20 5.9E-25 222.8 46.6 407 209-738 16-431 (656)
24 PRK10049 pgaA outer membrane p 99.9 5.2E-19 1.1E-23 216.3 48.7 201 434-660 248-463 (765)
25 PRK10049 pgaA outer membrane p 99.9 6.5E-19 1.4E-23 215.4 45.7 228 440-696 213-462 (765)
26 PRK15174 Vi polysaccharide exp 99.9 4.2E-19 9.2E-24 212.6 42.5 315 373-731 64-385 (656)
27 PLN03218 maturation of RBCL 1; 99.9 5.4E-17 1.2E-21 199.9 61.0 517 83-757 352-904 (1060)
28 PLN03081 pentatricopeptide (PP 99.9 2.8E-18 6.2E-23 209.0 49.3 464 62-726 89-557 (697)
29 PLN03081 pentatricopeptide (PP 99.9 3.8E-18 8.3E-23 207.9 50.1 460 104-761 89-556 (697)
30 KOG2076 RNA polymerase III tra 99.8 5.7E-16 1.2E-20 176.3 54.4 604 40-757 153-890 (895)
31 KOG2396 HAT (Half-A-TPR) repea 99.8 4.1E-17 8.8E-22 174.4 42.0 474 14-583 38-563 (568)
32 KOG0547 Translocase of outer m 99.8 5.9E-17 1.3E-21 172.1 38.8 228 394-656 337-569 (606)
33 PLN03218 maturation of RBCL 1; 99.8 9.2E-16 2E-20 189.1 53.9 323 385-744 472-800 (1060)
34 PRK11788 tetratricopeptide rep 99.8 4.2E-17 9.2E-22 185.4 38.1 300 426-757 38-342 (389)
35 COG5107 RNA14 Pre-mRNA 3'-end 99.8 2.7E-16 5.8E-21 165.1 40.2 462 9-663 24-541 (660)
36 KOG1258 mRNA processing protei 99.8 7.3E-16 1.6E-20 169.9 45.7 449 49-638 21-489 (577)
37 KOG0547 Translocase of outer m 99.8 3E-16 6.4E-21 166.9 38.7 238 426-726 329-566 (606)
38 PRK11788 tetratricopeptide rep 99.8 6.6E-17 1.4E-21 183.8 36.5 295 392-725 44-346 (389)
39 KOG1155 Anaphase-promoting com 99.8 2.9E-15 6.2E-20 158.6 43.1 201 423-654 330-537 (559)
40 COG5107 RNA14 Pre-mRNA 3'-end 99.8 1.5E-15 3.3E-20 159.5 38.4 449 50-689 32-495 (660)
41 KOG1258 mRNA processing protei 99.8 1.4E-14 3E-19 159.9 44.1 452 14-616 32-506 (577)
42 PF13429 TPR_15: Tetratricopep 99.8 1.7E-18 3.7E-23 187.1 11.8 261 464-757 11-272 (280)
43 KOG2076 RNA polymerase III tra 99.8 1E-12 2.2E-17 150.1 57.5 599 13-724 159-893 (895)
44 KOG1070 rRNA processing protei 99.7 3.8E-16 8.2E-21 183.1 27.7 250 442-756 1443-1694(1710)
45 PF13429 TPR_15: Tetratricopep 99.7 1.2E-17 2.6E-22 180.4 14.3 259 390-688 13-276 (280)
46 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.2E-18 163.6 52.0 472 23-621 30-517 (822)
47 KOG1155 Anaphase-promoting com 99.7 2.3E-13 5E-18 144.4 44.4 307 398-763 242-554 (559)
48 KOG1126 DNA-binding cell divis 99.7 6.9E-16 1.5E-20 171.0 25.6 289 398-730 334-623 (638)
49 PRK14574 hmsH outer membrane p 99.7 3.5E-13 7.6E-18 162.1 50.9 459 80-660 46-520 (822)
50 KOG1126 DNA-binding cell divis 99.7 5.6E-15 1.2E-19 163.9 26.4 220 403-659 406-626 (638)
51 TIGR00540 hemY_coli hemY prote 99.7 7.1E-14 1.5E-18 159.0 35.1 294 430-757 91-394 (409)
52 KOG1070 rRNA processing protei 99.7 2.1E-14 4.6E-19 168.7 28.4 251 404-688 1445-1699(1710)
53 PRK10747 putative protoheme IX 99.6 7.2E-13 1.6E-17 150.0 35.2 223 522-757 160-385 (398)
54 TIGR00540 hemY_coli hemY prote 99.6 8.8E-13 1.9E-17 150.1 36.1 296 389-726 90-399 (409)
55 PRK12370 invasion protein regu 99.6 1.6E-13 3.4E-18 162.1 29.1 261 437-741 275-544 (553)
56 COG3063 PilF Tfp pilus assembl 99.6 1.7E-13 3.8E-18 133.8 23.5 209 459-695 33-241 (250)
57 COG2956 Predicted N-acetylgluc 99.6 2.1E-12 4.5E-17 131.6 31.5 291 436-756 48-338 (389)
58 KOG2003 TPR repeat-containing 99.6 4.5E-12 9.9E-17 133.3 34.5 441 80-660 213-696 (840)
59 PRK10747 putative protoheme IX 99.6 2.2E-12 4.7E-17 146.1 35.0 295 389-729 90-393 (398)
60 PRK12370 invasion protein regu 99.6 7.2E-13 1.6E-17 156.5 29.8 237 380-654 251-503 (553)
61 KOG4162 Predicted calmodulin-b 99.6 1.5E-10 3.2E-15 130.6 44.3 293 400-730 461-786 (799)
62 TIGR02521 type_IV_pilW type IV 99.6 1.5E-12 3.2E-17 135.7 27.0 202 422-654 30-233 (234)
63 KOG1174 Anaphase-promoting com 99.6 3.6E-11 7.7E-16 126.0 36.1 291 429-757 204-495 (564)
64 KOG2396 HAT (Half-A-TPR) repea 99.5 2.2E-10 4.8E-15 123.4 42.1 131 48-180 39-181 (568)
65 PRK11189 lipoprotein NlpI; Pro 99.5 2.5E-12 5.4E-17 139.5 28.2 241 438-745 41-283 (296)
66 KOG1127 TPR repeat-containing 99.5 1.8E-10 3.9E-15 132.5 43.7 637 17-740 482-1187(1238)
67 PRK11189 lipoprotein NlpI; Pro 99.5 4.6E-13 9.9E-18 145.3 21.9 218 400-657 43-269 (296)
68 KOG1173 Anaphase-promoting com 99.5 1.2E-11 2.5E-16 134.9 31.8 286 421-741 242-534 (611)
69 TIGR02521 type_IV_pilW type IV 99.5 2.9E-12 6.3E-17 133.5 26.8 202 461-689 31-232 (234)
70 COG3063 PilF Tfp pilus assembl 99.5 2.6E-12 5.7E-17 125.7 24.1 206 423-660 35-243 (250)
71 KOG0128 RNA-binding protein SA 99.5 2.3E-11 5E-16 137.9 34.1 433 14-542 100-561 (881)
72 KOG1173 Anaphase-promoting com 99.5 4.2E-12 9.1E-17 138.3 26.7 276 383-696 242-524 (611)
73 KOG1127 TPR repeat-containing 99.5 4.7E-10 1E-14 129.1 43.3 484 41-653 473-996 (1238)
74 KOG2003 TPR repeat-containing 99.5 5E-11 1.1E-15 125.6 31.0 282 428-748 424-709 (840)
75 KOG1174 Anaphase-promoting com 99.5 2E-10 4.3E-15 120.5 34.7 295 392-730 205-503 (564)
76 KOG4162 Predicted calmodulin-b 99.5 4.1E-10 8.8E-15 127.2 39.0 447 98-659 319-789 (799)
77 KOG0624 dsRNA-activated protei 99.5 5.3E-11 1.1E-15 121.9 27.5 324 381-730 34-373 (504)
78 KOG1129 TPR repeat-containing 99.5 3.8E-12 8.2E-17 129.4 19.1 225 396-656 236-461 (478)
79 KOG1129 TPR repeat-containing 99.4 3.2E-11 7E-16 122.7 23.9 232 466-730 228-461 (478)
80 KOG1125 TPR repeat-containing 99.4 4.8E-12 1E-16 138.7 19.2 230 396-656 298-530 (579)
81 KOG1156 N-terminal acetyltrans 99.4 2.5E-08 5.4E-13 111.0 48.0 494 80-763 19-546 (700)
82 PLN02789 farnesyltranstransfer 99.4 1.1E-10 2.4E-15 126.5 27.9 234 475-740 51-314 (320)
83 KOG0128 RNA-binding protein SA 99.4 5.1E-09 1.1E-13 119.2 40.0 232 514-756 311-557 (881)
84 COG2956 Predicted N-acetylgluc 99.4 2.4E-09 5.3E-14 109.6 32.0 264 395-694 47-315 (389)
85 PF05843 Suf: Suppressor of fo 99.4 7.1E-12 1.5E-16 134.3 14.2 141 516-661 2-144 (280)
86 KOG0548 Molecular co-chaperone 99.4 4.3E-09 9.3E-14 114.9 35.1 234 426-695 227-460 (539)
87 cd05804 StaR_like StaR_like; a 99.3 2.3E-09 5.1E-14 120.2 34.9 310 421-757 4-331 (355)
88 KOG1125 TPR repeat-containing 99.3 1.4E-10 3E-15 127.4 23.4 255 467-751 291-560 (579)
89 PLN02789 farnesyltranstransfer 99.3 3.3E-10 7.2E-15 122.7 26.1 209 423-660 37-257 (320)
90 KOG0548 Molecular co-chaperone 99.3 3.3E-09 7.2E-14 115.8 33.3 451 79-636 13-472 (539)
91 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.6E-14 122.4 29.5 248 462-724 200-477 (508)
92 KOG0624 dsRNA-activated protei 99.3 2.8E-08 6.2E-13 102.2 34.2 288 377-695 64-375 (504)
93 cd05804 StaR_like StaR_like; a 99.3 7.5E-09 1.6E-13 116.1 33.2 313 381-726 2-336 (355)
94 PF05843 Suf: Suppressor of fo 99.3 3.2E-11 6.9E-16 129.3 12.3 137 28-172 2-140 (280)
95 KOG1156 N-terminal acetyltrans 99.2 4.3E-08 9.3E-13 109.1 35.8 77 698-776 370-448 (700)
96 KOG1840 Kinesin light chain [C 99.2 4.9E-09 1.1E-13 118.6 25.1 256 381-652 195-478 (508)
97 PRK14720 transcript cleavage f 99.2 3.5E-09 7.6E-14 126.2 23.6 272 421-730 29-309 (906)
98 PF08424 NRDE-2: NRDE-2, neces 99.1 7.8E-10 1.7E-14 120.8 16.2 116 11-134 3-134 (321)
99 PRK10370 formate-dependent nit 99.1 4.2E-09 9.2E-14 106.6 18.9 128 528-659 52-179 (198)
100 KOG2376 Signal recognition par 99.1 2.8E-05 6.1E-10 86.4 48.9 446 80-726 24-487 (652)
101 PRK15359 type III secretion sy 99.1 4.2E-09 9.2E-14 101.0 16.2 124 404-560 14-137 (144)
102 TIGR03302 OM_YfiO outer membra 99.1 1.3E-08 2.8E-13 107.0 21.5 195 421-655 31-234 (235)
103 PRK15359 type III secretion sy 99.1 5.2E-09 1.1E-13 100.4 16.3 120 443-591 13-132 (144)
104 PRK14720 transcript cleavage f 99.0 5.5E-08 1.2E-12 116.2 26.8 158 452-657 26-202 (906)
105 PF12569 NARP1: NMDA receptor- 99.0 7.2E-07 1.6E-11 102.4 34.1 324 396-764 17-370 (517)
106 KOG1128 Uncharacterized conser 99.0 7.3E-09 1.6E-13 116.6 16.8 222 381-654 391-617 (777)
107 TIGR03302 OM_YfiO outer membra 99.0 4.7E-08 1E-12 102.7 22.0 191 512-726 30-232 (235)
108 PRK15179 Vi polysaccharide bio 99.0 3.1E-08 6.8E-13 117.7 22.4 140 512-658 83-222 (694)
109 COG3071 HemY Uncharacterized e 99.0 1.6E-06 3.4E-11 92.2 32.0 283 434-757 95-385 (400)
110 KOG3060 Uncharacterized conser 99.0 1.8E-07 3.9E-12 93.2 23.3 195 397-620 26-223 (289)
111 PRK10370 formate-dependent nit 99.0 1.5E-08 3.2E-13 102.7 15.2 119 436-578 52-173 (198)
112 COG3071 HemY Uncharacterized e 98.9 3E-06 6.5E-11 90.1 31.1 290 392-726 93-390 (400)
113 COG5010 TadD Flp pilus assembl 98.9 1.1E-07 2.4E-12 95.7 19.6 166 421-616 65-230 (257)
114 KOG0550 Molecular chaperone (D 98.9 1E-07 2.2E-12 101.0 19.4 276 398-689 64-350 (486)
115 KOG0550 Molecular chaperone (D 98.9 1.7E-07 3.7E-12 99.2 21.0 272 430-726 56-350 (486)
116 KOG2376 Signal recognition par 98.9 2.4E-05 5.2E-10 86.9 38.3 356 377-757 38-482 (652)
117 PRK15179 Vi polysaccharide bio 98.9 6.1E-08 1.3E-12 115.2 19.7 148 421-594 84-231 (694)
118 KOG1128 Uncharacterized conser 98.9 5.3E-08 1.1E-12 109.9 17.9 214 427-689 402-616 (777)
119 TIGR02552 LcrH_SycD type III s 98.9 6.1E-08 1.3E-12 92.1 15.3 122 536-664 4-125 (135)
120 TIGR02552 LcrH_SycD type III s 98.8 6E-08 1.3E-12 92.2 14.3 117 445-587 5-121 (135)
121 KOG3060 Uncharacterized conser 98.8 1.3E-06 2.7E-11 87.3 23.2 170 515-694 49-224 (289)
122 PF12569 NARP1: NMDA receptor- 98.8 3.5E-06 7.5E-11 96.9 29.5 94 628-726 198-291 (517)
123 COG5191 Uncharacterized conser 98.8 6.6E-09 1.4E-13 105.4 6.2 128 13-150 37-188 (435)
124 KOG3785 Uncharacterized conser 98.7 1.7E-05 3.7E-10 82.4 28.4 325 384-756 58-451 (557)
125 PRK04841 transcriptional regul 98.7 0.00018 3.9E-09 91.4 44.2 321 393-730 419-764 (903)
126 COG4783 Putative Zn-dependent 98.7 1.1E-06 2.4E-11 95.7 20.1 134 421-578 304-437 (484)
127 COG5010 TadD Flp pilus assembl 98.7 1.7E-06 3.8E-11 87.3 19.7 175 442-648 52-226 (257)
128 KOG3617 WD40 and TPR repeat-co 98.7 3.9E-05 8.4E-10 87.5 31.3 180 422-655 911-1117(1416)
129 KOG3617 WD40 and TPR repeat-co 98.6 2.9E-05 6.2E-10 88.5 28.8 326 428-833 805-1197(1416)
130 COG4235 Cytochrome c biogenesi 98.6 1E-06 2.2E-11 91.2 16.1 125 530-658 137-261 (287)
131 KOG3785 Uncharacterized conser 98.6 0.00044 9.5E-09 72.3 34.2 308 398-737 166-498 (557)
132 KOG0553 TPR repeat-containing 98.6 7.7E-07 1.7E-11 91.4 13.0 110 522-638 88-197 (304)
133 COG4783 Putative Zn-dependent 98.5 3.5E-05 7.7E-10 84.3 25.6 155 454-656 303-457 (484)
134 PF04733 Coatomer_E: Coatomer 98.5 6.8E-06 1.5E-10 88.2 19.6 260 390-695 8-270 (290)
135 KOG0553 TPR repeat-containing 98.5 1.6E-06 3.5E-11 89.1 12.7 112 431-566 89-200 (304)
136 PF08424 NRDE-2: NRDE-2, neces 98.5 3.8E-06 8.2E-11 92.0 16.6 154 44-199 3-183 (321)
137 KOG3616 Selective LIM binding 98.5 0.0054 1.2E-07 69.7 40.3 56 698-756 996-1057(1636)
138 PRK15363 pathogenicity island 98.4 6E-06 1.3E-10 78.1 14.8 103 513-620 33-135 (157)
139 PRK04841 transcriptional regul 98.4 0.00015 3.2E-09 92.2 32.5 315 425-758 411-756 (903)
140 PLN03088 SGT1, suppressor of 98.4 5.2E-06 1.1E-10 92.3 15.6 101 466-588 7-107 (356)
141 PRK15363 pathogenicity island 98.4 7.2E-06 1.6E-10 77.6 13.3 65 514-578 68-132 (157)
142 PLN03088 SGT1, suppressor of 98.3 1.2E-05 2.5E-10 89.6 15.7 94 522-620 9-102 (356)
143 cd00189 TPR Tetratricopeptide 98.3 8.4E-06 1.8E-10 70.7 11.6 61 426-490 3-63 (100)
144 PRK10153 DNA-binding transcrip 98.3 5.9E-05 1.3E-09 87.5 21.4 144 512-661 334-490 (517)
145 PF13414 TPR_11: TPR repeat; P 98.3 3E-06 6.5E-11 69.9 7.9 67 514-582 2-69 (69)
146 cd00189 TPR Tetratricopeptide 98.3 1.1E-05 2.5E-10 69.8 11.9 95 464-578 3-97 (100)
147 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.8E-05 4E-10 72.8 13.2 109 424-550 3-111 (119)
148 COG3898 Uncharacterized membra 98.2 0.0068 1.5E-07 64.6 33.0 297 432-765 93-393 (531)
149 PF04733 Coatomer_E: Coatomer 98.2 7.8E-05 1.7E-09 80.1 19.5 247 473-757 13-260 (290)
150 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.9E-05 8.4E-10 70.7 13.4 105 549-658 2-110 (119)
151 PRK02603 photosystem I assembl 98.1 0.0001 2.2E-09 73.1 16.6 121 421-584 33-153 (172)
152 PF09976 TPR_21: Tetratricopep 98.1 7.7E-05 1.7E-09 71.7 15.1 120 527-651 23-145 (145)
153 PF14938 SNAP: Soluble NSF att 98.1 0.00016 3.5E-09 77.9 19.0 214 426-654 38-267 (282)
154 COG4235 Cytochrome c biogenesi 98.1 7.6E-05 1.7E-09 77.6 15.1 119 43-172 139-260 (287)
155 PF13414 TPR_11: TPR repeat; P 98.1 8.1E-06 1.8E-10 67.3 6.5 67 422-492 2-69 (69)
156 PF13432 TPR_16: Tetratricopep 98.1 1.4E-05 2.9E-10 65.1 7.6 63 520-584 2-64 (65)
157 PRK10153 DNA-binding transcrip 98.1 0.00011 2.3E-09 85.4 17.8 141 421-586 335-488 (517)
158 PRK10866 outer membrane biogen 98.1 0.0011 2.4E-08 69.4 23.3 185 548-757 31-236 (243)
159 CHL00033 ycf3 photosystem I as 98.0 0.00016 3.4E-09 71.5 15.8 103 439-560 15-117 (168)
160 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00012 2.7E-09 81.2 16.3 128 423-577 169-296 (395)
161 PF14938 SNAP: Soluble NSF att 98.0 0.00032 7E-09 75.6 19.4 172 522-730 42-228 (282)
162 PF13432 TPR_16: Tetratricopep 98.0 2.8E-05 6E-10 63.2 8.4 64 466-549 2-65 (65)
163 PF09976 TPR_21: Tetratricopep 98.0 0.00026 5.5E-09 68.1 16.4 122 436-576 24-145 (145)
164 COG4785 NlpI Lipoprotein NlpI, 98.0 0.00062 1.3E-08 66.7 18.3 195 515-726 65-266 (297)
165 PRK02603 photosystem I assembl 98.0 0.00021 4.5E-09 70.9 15.2 97 549-650 35-132 (172)
166 PF13525 YfiO: Outer membrane 97.9 0.00061 1.3E-08 69.5 18.5 63 516-578 6-71 (203)
167 COG5191 Uncharacterized conser 97.9 1.8E-05 3.9E-10 81.0 6.9 108 11-130 91-199 (435)
168 CHL00033 ycf3 photosystem I as 97.9 0.00029 6.4E-09 69.6 15.5 76 514-591 34-112 (168)
169 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0046 1E-07 63.0 25.2 203 423-656 59-268 (291)
170 KOG1130 Predicted G-alpha GTPa 97.9 0.00087 1.9E-08 71.4 18.0 278 432-726 26-344 (639)
171 COG3898 Uncharacterized membra 97.9 0.029 6.2E-07 60.0 29.0 260 385-726 122-392 (531)
172 PRK11906 transcriptional regul 97.8 0.0011 2.3E-08 73.4 19.2 152 530-689 273-436 (458)
173 PF12895 Apc3: Anaphase-promot 97.8 4.6E-05 1E-09 65.6 7.0 83 474-575 2-84 (84)
174 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00042 9E-09 77.0 16.0 122 517-648 171-292 (395)
175 PF12895 Apc3: Anaphase-promot 97.8 6.7E-05 1.4E-09 64.6 7.8 83 436-541 2-84 (84)
176 PF14559 TPR_19: Tetratricopep 97.8 6.5E-05 1.4E-09 61.6 7.1 65 80-146 3-67 (68)
177 KOG4340 Uncharacterized conser 97.8 0.002 4.3E-08 66.1 18.8 218 472-722 21-266 (459)
178 PRK11906 transcriptional regul 97.8 0.0006 1.3E-08 75.4 16.4 168 581-756 244-431 (458)
179 PF13525 YfiO: Outer membrane 97.8 0.0025 5.4E-08 65.1 19.8 167 548-718 4-199 (203)
180 PRK10803 tol-pal system protei 97.8 0.00059 1.3E-08 72.0 15.3 110 423-550 142-252 (263)
181 KOG0543 FKBP-type peptidyl-pro 97.8 0.00067 1.5E-08 73.2 15.5 149 463-620 210-358 (397)
182 PF14559 TPR_19: Tetratricopep 97.8 0.00011 2.3E-09 60.3 7.6 63 526-590 2-64 (68)
183 COG0457 NrfG FOG: TPR repeat [ 97.8 0.058 1.3E-06 54.7 30.1 205 516-730 60-268 (291)
184 PRK10866 outer membrane biogen 97.7 0.0061 1.3E-07 63.9 22.1 186 514-723 31-238 (243)
185 COG4105 ComL DNA uptake lipopr 97.7 0.0099 2.1E-07 60.8 22.3 179 514-694 33-237 (254)
186 KOG0543 FKBP-type peptidyl-pro 97.7 0.00093 2E-08 72.1 15.0 130 520-656 213-358 (397)
187 COG4700 Uncharacterized protei 97.7 0.0038 8.2E-08 59.9 17.2 128 423-572 89-216 (251)
188 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0048 1E-07 60.7 17.9 194 424-654 66-267 (297)
189 PRK10803 tol-pal system protei 97.6 0.0012 2.6E-08 69.7 15.3 52 527-578 155-209 (263)
190 COG4700 Uncharacterized protei 97.6 0.0053 1.2E-07 58.9 17.2 127 516-648 90-217 (251)
191 KOG2053 Mitochondrial inherita 97.6 0.031 6.8E-07 65.8 26.9 226 435-694 21-259 (932)
192 PF12688 TPR_5: Tetratrico pep 97.6 0.0015 3.4E-08 59.8 13.4 96 516-616 2-103 (120)
193 PF13371 TPR_9: Tetratricopept 97.6 0.00024 5.2E-09 59.2 7.5 62 523-586 3-64 (73)
194 PRK15331 chaperone protein Sic 97.6 0.0012 2.7E-08 62.9 12.7 100 424-548 38-137 (165)
195 PF13371 TPR_9: Tetratricopept 97.5 0.00038 8.2E-09 57.9 8.1 70 468-557 2-71 (73)
196 PF13428 TPR_14: Tetratricopep 97.4 0.00031 6.6E-09 52.0 5.2 42 516-557 2-43 (44)
197 KOG3081 Vesicle coat complex C 97.4 0.064 1.4E-06 54.9 22.6 128 523-662 116-245 (299)
198 PF12688 TPR_5: Tetratrico pep 97.4 0.0042 9E-08 57.0 12.9 99 462-577 2-103 (120)
199 PF13428 TPR_14: Tetratricopep 97.4 0.00036 7.8E-09 51.6 4.9 42 424-469 2-43 (44)
200 PRK15331 chaperone protein Sic 97.3 0.0028 6.1E-08 60.5 11.5 98 466-586 42-139 (165)
201 KOG3081 Vesicle coat complex C 97.2 0.1 2.2E-06 53.4 22.2 168 422-620 106-274 (299)
202 KOG1941 Acetylcholine receptor 97.2 0.15 3.3E-06 54.1 23.9 220 424-653 123-360 (518)
203 KOG4648 Uncharacterized conser 97.2 0.00055 1.2E-08 71.2 6.0 106 521-633 103-208 (536)
204 KOG4340 Uncharacterized conser 97.2 0.13 2.9E-06 53.1 22.2 165 421-620 42-214 (459)
205 PF08311 Mad3_BUB1_I: Mad3/BUB 97.1 0.015 3.2E-07 54.1 13.7 116 605-724 2-126 (126)
206 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.002 4.4E-08 71.2 9.2 69 510-578 70-141 (453)
207 KOG4555 TPR repeat-containing 97.1 0.0078 1.7E-07 54.3 11.1 94 524-618 52-145 (175)
208 PF13512 TPR_18: Tetratricopep 97.1 0.011 2.4E-07 55.3 12.6 72 462-550 11-82 (142)
209 KOG3616 Selective LIM binding 97.0 0.99 2.1E-05 52.2 44.5 100 545-650 991-1105(1636)
210 PF13431 TPR_17: Tetratricopep 97.0 0.00062 1.3E-08 47.0 3.1 33 537-569 1-33 (34)
211 PF08311 Mad3_BUB1_I: Mad3/BUB 97.0 0.019 4.1E-07 53.3 13.9 111 532-651 2-126 (126)
212 KOG1586 Protein required for f 97.0 0.038 8.2E-07 55.3 16.3 50 529-578 87-143 (288)
213 PF13424 TPR_12: Tetratricopep 97.0 0.0018 4E-08 54.6 6.2 65 514-578 4-75 (78)
214 KOG2796 Uncharacterized conser 97.0 0.11 2.4E-06 52.9 19.3 138 426-583 180-318 (366)
215 COG1729 Uncharacterized protei 96.9 0.018 3.9E-07 59.5 13.7 111 426-554 144-254 (262)
216 KOG2471 TPR repeat-containing 96.9 0.23 5.1E-06 54.8 22.4 314 431-765 214-685 (696)
217 PF13512 TPR_18: Tetratricopep 96.9 0.023 5.1E-07 53.1 13.0 63 516-578 11-76 (142)
218 KOG1941 Acetylcholine receptor 96.9 0.29 6.3E-06 52.1 22.1 175 550-726 84-275 (518)
219 KOG4234 TPR repeat-containing 96.8 0.017 3.7E-07 56.2 12.1 92 524-620 104-200 (271)
220 PF06552 TOM20_plant: Plant sp 96.8 0.013 2.8E-07 56.6 11.2 96 439-584 7-113 (186)
221 COG1729 Uncharacterized protei 96.8 0.015 3.2E-07 60.2 12.2 94 559-659 151-250 (262)
222 PF13424 TPR_12: Tetratricopep 96.8 0.0029 6.4E-08 53.3 5.9 69 422-490 4-75 (78)
223 PF02259 FAT: FAT domain; Int 96.8 0.68 1.5E-05 51.5 26.6 141 421-561 144-304 (352)
224 smart00386 HAT HAT (Half-A-TPR 96.7 0.0024 5.2E-08 43.4 4.3 31 83-113 2-32 (33)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.023 5E-07 63.1 13.5 70 420-490 72-141 (453)
226 KOG4555 TPR repeat-containing 96.7 0.018 4E-07 52.0 10.3 86 600-689 55-144 (175)
227 KOG2796 Uncharacterized conser 96.7 0.18 4E-06 51.4 18.4 138 517-657 179-319 (366)
228 KOG1585 Protein required for f 96.6 0.73 1.6E-05 46.7 21.9 50 706-757 199-251 (308)
229 PF13281 DUF4071: Domain of un 96.5 0.24 5.1E-06 54.5 19.6 120 516-639 142-274 (374)
230 KOG0530 Protein farnesyltransf 96.5 0.62 1.3E-05 47.7 20.8 250 438-739 41-309 (318)
231 COG4105 ComL DNA uptake lipopr 96.5 0.54 1.2E-05 48.4 20.8 182 549-756 34-227 (254)
232 KOG2610 Uncharacterized conser 96.4 0.91 2E-05 48.0 22.1 161 432-617 112-276 (491)
233 KOG4234 TPR repeat-containing 96.4 0.032 7E-07 54.3 10.7 99 555-657 101-201 (271)
234 PF13281 DUF4071: Domain of un 96.4 0.35 7.6E-06 53.2 19.9 178 547-727 139-335 (374)
235 KOG4648 Uncharacterized conser 96.3 0.017 3.7E-07 60.5 9.0 230 429-730 103-333 (536)
236 smart00777 Mad3_BUB1_I Mad3/BU 96.3 0.056 1.2E-06 49.7 11.3 109 533-650 3-125 (125)
237 PF08631 SPO22: Meiosis protei 96.3 1.7 3.7E-05 46.7 24.5 142 433-580 3-152 (278)
238 smart00777 Mad3_BUB1_I Mad3/BU 96.2 0.041 8.9E-07 50.5 10.1 108 46-164 5-124 (125)
239 PF02184 HAT: HAT (Half-A-TPR) 96.2 0.0059 1.3E-07 40.7 3.3 30 712-744 2-31 (32)
240 KOG0890 Protein kinase of the 96.2 8 0.00017 51.5 44.4 292 385-694 1629-1961(2382)
241 PF04184 ST7: ST7 protein; In 96.1 0.36 7.7E-06 54.0 18.3 149 431-586 176-331 (539)
242 PF08631 SPO22: Meiosis protei 96.1 2.3 5E-05 45.6 24.8 229 526-758 4-271 (278)
243 PF04184 ST7: ST7 protein; In 96.1 0.27 5.9E-06 54.9 17.4 178 531-730 184-378 (539)
244 PF06552 TOM20_plant: Plant sp 96.1 0.07 1.5E-06 51.7 11.3 92 42-133 7-111 (186)
245 PF02184 HAT: HAT (Half-A-TPR) 96.0 0.0086 1.9E-07 39.9 3.1 30 603-635 2-31 (32)
246 PF13431 TPR_17: Tetratricopep 95.9 0.009 2E-07 41.2 3.1 33 610-644 1-33 (34)
247 smart00386 HAT HAT (Half-A-TPR 95.7 0.021 4.5E-07 38.6 4.6 30 41-70 2-31 (33)
248 KOG0530 Protein farnesyltransf 95.7 2.3 5E-05 43.7 20.4 151 438-615 93-251 (318)
249 KOG4642 Chaperone-dependent E3 95.7 0.076 1.7E-06 53.4 9.7 99 474-592 23-124 (284)
250 PF07719 TPR_2: Tetratricopept 95.6 0.024 5.2E-07 38.8 4.6 33 424-456 2-34 (34)
251 PF03704 BTAD: Bacterial trans 95.4 0.89 1.9E-05 43.4 16.5 63 516-578 63-125 (146)
252 PF02259 FAT: FAT domain; Int 95.4 3.8 8.3E-05 45.4 24.2 122 623-746 145-305 (352)
253 KOG1130 Predicted G-alpha GTPa 95.4 0.38 8.2E-06 52.1 14.5 276 397-689 31-344 (639)
254 KOG4642 Chaperone-dependent E3 95.4 0.097 2.1E-06 52.7 9.5 83 398-490 25-107 (284)
255 KOG1585 Protein required for f 95.4 2.5 5.4E-05 43.0 19.1 117 517-652 93-218 (308)
256 PF00515 TPR_1: Tetratricopept 95.2 0.03 6.5E-07 38.5 3.9 32 424-455 2-33 (34)
257 PF07719 TPR_2: Tetratricopept 95.2 0.048 1E-06 37.3 5.0 33 625-657 2-34 (34)
258 PF04910 Tcf25: Transcriptiona 95.2 0.95 2.1E-05 50.3 17.8 165 450-620 33-225 (360)
259 PF00515 TPR_1: Tetratricopept 95.0 0.054 1.2E-06 37.2 4.6 29 550-578 2-30 (34)
260 KOG0890 Protein kinase of the 94.9 4.5 9.7E-05 53.7 24.3 231 514-776 1669-1936(2382)
261 PF10300 DUF3808: Protein of u 94.5 1.4 3E-05 51.1 17.6 181 537-726 179-376 (468)
262 PF13181 TPR_8: Tetratricopept 94.5 0.068 1.5E-06 36.6 4.1 32 424-455 2-33 (34)
263 COG3118 Thioredoxin domain-con 94.4 2.6 5.5E-05 44.4 17.0 148 600-757 146-296 (304)
264 PF03704 BTAD: Bacterial trans 94.4 0.79 1.7E-05 43.7 13.0 49 601-651 75-123 (146)
265 KOG2041 WD40 repeat protein [G 94.3 13 0.00029 43.3 26.9 130 128-276 682-823 (1189)
266 PF10345 Cohesin_load: Cohesin 94.3 16 0.00036 44.0 36.2 312 380-721 25-428 (608)
267 KOG1586 Protein required for f 94.2 7.2 0.00016 39.6 23.7 148 458-621 71-228 (288)
268 KOG3824 Huntingtin interacting 94.1 0.15 3.3E-06 52.9 7.4 61 526-588 127-187 (472)
269 COG3118 Thioredoxin domain-con 94.1 6 0.00013 41.7 19.0 128 427-578 138-265 (304)
270 KOG1308 Hsp70-interacting prot 93.8 0.068 1.5E-06 56.6 4.2 119 600-726 126-244 (377)
271 PF10300 DUF3808: Protein of u 93.8 3.4 7.3E-05 47.9 18.6 119 528-652 246-375 (468)
272 KOG2053 Mitochondrial inherita 93.7 21 0.00045 43.2 50.6 131 80-221 21-155 (932)
273 COG2976 Uncharacterized protei 93.6 0.88 1.9E-05 44.8 11.2 99 427-547 93-191 (207)
274 COG2976 Uncharacterized protei 93.3 3.7 8E-05 40.5 14.8 118 536-658 73-193 (207)
275 KOG3824 Huntingtin interacting 93.2 0.3 6.5E-06 50.8 7.7 59 600-660 128-186 (472)
276 KOG1550 Extracellular protein 93.2 17 0.00037 43.2 23.6 280 400-730 229-541 (552)
277 PF13181 TPR_8: Tetratricopept 93.1 0.2 4.3E-06 34.2 4.5 31 516-546 2-32 (34)
278 KOG0551 Hsp90 co-chaperone CNS 93.0 0.97 2.1E-05 47.9 11.1 96 429-578 87-182 (390)
279 KOG1464 COP9 signalosome, subu 92.8 4.5 9.6E-05 41.7 15.0 196 529-727 41-261 (440)
280 KOG2610 Uncharacterized conser 92.6 12 0.00027 39.9 18.4 119 600-723 115-235 (491)
281 PF13174 TPR_6: Tetratricopept 92.2 0.31 6.8E-06 32.8 4.5 32 626-657 2-33 (33)
282 PF13176 TPR_7: Tetratricopept 92.1 0.15 3.2E-06 35.6 2.8 27 552-578 2-28 (36)
283 KOG1538 Uncharacterized conser 91.7 6.2 0.00014 45.4 16.0 50 524-576 782-831 (1081)
284 KOG0376 Serine-threonine phosp 91.3 0.39 8.5E-06 53.5 6.3 93 560-659 15-107 (476)
285 KOG0551 Hsp90 co-chaperone CNS 91.3 1.6 3.4E-05 46.4 10.3 90 526-620 92-185 (390)
286 KOG0376 Serine-threonine phosp 91.1 0.39 8.6E-06 53.4 6.0 105 430-558 11-115 (476)
287 KOG0545 Aryl-hydrocarbon recep 90.9 6.4 0.00014 40.1 13.6 130 465-598 182-311 (329)
288 KOG0545 Aryl-hydrocarbon recep 90.7 8.3 0.00018 39.4 14.2 99 517-620 180-296 (329)
289 KOG0985 Vesicle coat protein c 90.6 51 0.0011 40.6 35.4 235 385-646 1104-1376(1666)
290 PF04910 Tcf25: Transcriptiona 90.6 7.6 0.00017 43.2 15.8 168 541-730 32-225 (360)
291 KOG1308 Hsp70-interacting prot 90.4 0.32 6.9E-06 51.7 4.3 53 436-492 127-179 (377)
292 PF14561 TPR_20: Tetratricopep 90.2 3.5 7.6E-05 35.7 10.0 79 88-167 8-86 (90)
293 PF13176 TPR_7: Tetratricopept 90.0 0.51 1.1E-05 32.9 3.9 27 426-452 2-28 (36)
294 PF13174 TPR_6: Tetratricopept 89.9 0.51 1.1E-05 31.7 3.7 32 425-456 2-33 (33)
295 KOG2066 Vacuolar assembly/sort 89.5 37 0.00079 40.6 20.1 66 550-620 506-577 (846)
296 KOG2041 WD40 repeat protein [G 89.4 52 0.0011 38.8 23.7 181 422-650 691-878 (1189)
297 smart00028 TPR Tetratricopepti 89.3 0.6 1.3E-05 30.3 3.8 32 424-455 2-33 (34)
298 KOG1464 COP9 signalosome, subu 89.1 29 0.00063 36.0 16.7 189 520-711 70-286 (440)
299 PF04781 DUF627: Protein of un 89.0 9.3 0.0002 34.2 11.7 49 533-582 62-110 (111)
300 KOG1550 Extracellular protein 88.7 47 0.001 39.5 21.4 255 397-689 263-538 (552)
301 COG4976 Predicted methyltransf 88.4 0.62 1.3E-05 46.7 4.4 59 524-584 4-62 (287)
302 KOG2422 Uncharacterized conser 87.7 19 0.00041 41.4 15.8 182 436-620 251-451 (665)
303 KOG4507 Uncharacterized conser 87.2 12 0.00026 42.8 13.9 124 604-733 195-318 (886)
304 COG4976 Predicted methyltransf 86.9 1.2 2.5E-05 44.9 5.3 57 600-658 7-63 (287)
305 PF09986 DUF2225: Uncharacteri 85.6 5.6 0.00012 40.7 9.8 95 398-492 92-196 (214)
306 KOG2471 TPR repeat-containing 85.2 8.8 0.00019 43.0 11.3 146 520-669 211-380 (696)
307 PF04053 Coatomer_WDAD: Coatom 84.7 18 0.00039 41.5 14.4 106 424-577 296-401 (443)
308 smart00028 TPR Tetratricopepti 84.2 2.1 4.6E-05 27.5 4.3 31 626-656 3-33 (34)
309 PF14561 TPR_20: Tetratricopep 84.2 14 0.0003 32.0 10.2 49 607-657 7-55 (90)
310 PF13041 PPR_2: PPR repeat fam 83.9 3.3 7E-05 31.2 5.5 43 250-292 4-48 (50)
311 PF10602 RPN7: 26S proteasome 83.4 8.3 0.00018 38.2 9.7 67 424-491 37-103 (177)
312 PRK10941 hypothetical protein; 82.8 7 0.00015 41.4 9.4 64 520-585 186-249 (269)
313 KOG4507 Uncharacterized conser 82.1 6 0.00013 45.1 8.7 82 118-202 195-281 (886)
314 PF10602 RPN7: 26S proteasome 81.5 19 0.00042 35.6 11.5 101 623-724 35-140 (177)
315 COG2909 MalT ATP-dependent tra 80.5 1.5E+02 0.0033 36.4 26.5 250 421-685 413-684 (894)
316 COG3629 DnrI DNA-binding trans 79.6 17 0.00036 38.6 10.7 89 516-620 154-242 (280)
317 PF09986 DUF2225: Uncharacteri 79.6 19 0.00041 36.8 11.0 115 436-557 90-208 (214)
318 PF14853 Fis1_TPR_C: Fis1 C-te 79.2 12 0.00025 28.8 7.0 41 628-668 5-45 (53)
319 PF13374 TPR_10: Tetratricopep 78.4 4.1 9E-05 28.8 4.3 30 549-578 2-31 (42)
320 KOG2066 Vacuolar assembly/sort 77.5 1.7E+02 0.0037 35.3 26.2 22 173-194 359-380 (846)
321 PF11207 DUF2989: Protein of u 76.4 82 0.0018 31.6 13.8 79 671-752 117-197 (203)
322 KOG1538 Uncharacterized conser 76.3 1.7E+02 0.0036 34.5 20.5 40 767-809 804-843 (1081)
323 PRK10941 hypothetical protein; 76.1 34 0.00073 36.4 11.9 65 601-667 194-258 (269)
324 KOG0529 Protein geranylgeranyl 75.5 45 0.00097 37.0 12.7 133 530-668 90-239 (421)
325 KOG2422 Uncharacterized conser 75.1 1.2E+02 0.0026 35.3 16.2 166 475-656 252-451 (665)
326 PF13374 TPR_10: Tetratricopep 74.0 5.6 0.00012 28.1 4.0 29 251-279 4-32 (42)
327 TIGR03504 FimV_Cterm FimV C-te 73.0 5.1 0.00011 29.4 3.4 26 253-278 3-28 (44)
328 COG3629 DnrI DNA-binding trans 72.6 20 0.00043 38.1 9.0 64 422-489 152-215 (280)
329 PF10345 Cohesin_load: Cohesin 72.1 2.3E+02 0.005 34.2 44.3 204 435-648 151-428 (608)
330 KOG0529 Protein geranylgeranyl 70.9 98 0.0021 34.5 13.9 166 376-591 54-235 (421)
331 cd02677 MIT_SNX15 MIT: domain 70.4 38 0.00083 28.1 8.5 53 559-616 16-72 (75)
332 PF09613 HrpB1_HrpK: Bacterial 70.2 1.1E+02 0.0023 29.6 14.5 61 428-492 15-75 (160)
333 PF11207 DUF2989: Protein of u 69.8 1.3E+02 0.0028 30.3 17.1 83 462-569 112-198 (203)
334 KOG3364 Membrane protein invol 69.8 26 0.00057 32.6 7.9 67 602-669 49-116 (149)
335 KOG3783 Uncharacterized conser 69.1 2.3E+02 0.0049 32.9 20.9 70 421-492 265-334 (546)
336 PF01535 PPR: PPR repeat; Int 69.1 6.7 0.00014 25.5 3.2 27 251-277 2-28 (31)
337 PF12854 PPR_1: PPR repeat 69.0 11 0.00024 25.8 4.2 27 422-448 6-32 (34)
338 cd02680 MIT_calpain7_2 MIT: do 68.0 40 0.00086 28.0 8.0 34 531-579 3-36 (75)
339 COG0790 FOG: TPR repeat, SEL1 67.3 1.8E+02 0.0039 31.1 19.2 16 603-618 206-221 (292)
340 PF04053 Coatomer_WDAD: Coatom 66.8 1.5E+02 0.0033 34.0 15.4 157 434-650 272-428 (443)
341 PF12854 PPR_1: PPR repeat 66.7 10 0.00022 26.0 3.7 28 514-541 6-33 (34)
342 COG5159 RPN6 26S proteasome re 66.7 74 0.0016 33.5 11.2 211 427-655 7-237 (421)
343 PF12862 Apc5: Anaphase-promot 66.4 31 0.00067 30.0 7.7 57 600-656 10-73 (94)
344 PF07721 TPR_4: Tetratricopept 66.0 7.6 0.00016 24.7 2.7 24 550-573 2-25 (26)
345 KOG3807 Predicted membrane pro 65.9 2E+02 0.0043 31.0 18.1 198 433-660 194-398 (556)
346 KOG4814 Uncharacterized conser 65.9 30 0.00064 40.3 9.0 101 386-490 356-457 (872)
347 PF14853 Fis1_TPR_C: Fis1 C-te 65.2 37 0.00081 26.1 6.8 30 524-553 10-39 (53)
348 PF07721 TPR_4: Tetratricopept 65.2 9.4 0.0002 24.2 3.1 24 251-274 3-26 (26)
349 PRK15180 Vi polysaccharide bio 64.7 59 0.0013 36.6 10.8 133 434-592 300-432 (831)
350 COG4941 Predicted RNA polymera 64.4 2.2E+02 0.0047 31.0 15.5 176 531-726 212-394 (415)
351 PF13041 PPR_2: PPR repeat fam 64.2 34 0.00074 25.5 6.6 28 551-578 5-32 (50)
352 COG0790 FOG: TPR repeat, SEL1 63.9 2.1E+02 0.0045 30.6 19.3 121 528-655 90-222 (292)
353 KOG4521 Nuclear pore complex, 63.1 4.1E+02 0.0088 33.9 18.0 189 549-757 920-1127(1480)
354 TIGR02561 HrpB1_HrpK type III 62.9 1.3E+02 0.0029 28.7 11.3 94 636-756 22-116 (153)
355 TIGR00756 PPR pentatricopeptid 62.1 13 0.00028 24.7 3.6 28 251-278 2-29 (35)
356 smart00299 CLH Clathrin heavy 61.4 1.4E+02 0.003 27.8 13.3 49 432-485 16-64 (140)
357 PF07720 TPR_3: Tetratricopept 59.6 24 0.00053 24.6 4.5 32 424-455 2-35 (36)
358 KOG1463 26S proteasome regulat 59.2 2.7E+02 0.0058 30.4 16.2 274 435-730 16-319 (411)
359 PF12862 Apc5: Anaphase-promot 58.2 27 0.00058 30.4 5.8 57 434-490 9-70 (94)
360 KOG2063 Vacuolar assembly/sort 58.1 4.7E+02 0.01 32.8 17.9 95 698-796 685-779 (877)
361 PF15297 CKAP2_C: Cytoskeleton 56.4 46 0.001 36.2 8.1 56 601-656 116-172 (353)
362 PF01535 PPR: PPR repeat; Int 55.8 18 0.00039 23.4 3.4 27 518-544 3-29 (31)
363 TIGR03504 FimV_Cterm FimV C-te 55.5 17 0.00037 26.7 3.3 26 701-726 3-28 (44)
364 KOG2114 Vacuolar assembly/sort 55.1 4.8E+02 0.01 32.0 18.1 30 515-544 368-397 (933)
365 PF15297 CKAP2_C: Cytoskeleton 54.5 40 0.00086 36.7 7.3 69 396-470 115-184 (353)
366 TIGR02561 HrpB1_HrpK type III 53.9 2.1E+02 0.0045 27.4 14.2 53 436-492 23-75 (153)
367 PF00244 14-3-3: 14-3-3 protei 53.5 2.7E+02 0.0058 29.0 13.2 28 427-454 5-32 (236)
368 COG2909 MalT ATP-dependent tra 52.4 5.5E+02 0.012 31.8 34.1 303 421-756 345-682 (894)
369 COG3947 Response regulator con 52.1 46 0.00099 35.2 6.9 62 422-487 278-339 (361)
370 KOG3783 Uncharacterized conser 51.7 4.5E+02 0.0096 30.6 20.7 59 427-489 235-295 (546)
371 KOG1920 IkappaB kinase complex 51.3 6.4E+02 0.014 32.4 20.6 80 399-490 889-968 (1265)
372 PRK15180 Vi polysaccharide bio 51.2 80 0.0017 35.6 9.0 124 528-658 302-425 (831)
373 COG3914 Spy Predicted O-linked 50.7 1.8E+02 0.004 33.9 12.0 122 532-659 48-177 (620)
374 COG1747 Uncharacterized N-term 50.6 4.5E+02 0.0098 30.4 22.4 143 515-668 99-247 (711)
375 COG5159 RPN6 26S proteasome re 50.2 3.4E+02 0.0074 28.8 15.3 200 525-726 13-235 (421)
376 COG3947 Response regulator con 49.3 59 0.0013 34.4 7.2 60 518-577 282-341 (361)
377 KOG4014 Uncharacterized conser 49.2 1.7E+02 0.0037 28.9 9.8 159 547-729 32-200 (248)
378 PF13812 PPR_3: Pentatricopept 49.0 30 0.00065 22.9 3.7 27 251-277 3-29 (34)
379 KOG3364 Membrane protein invol 48.8 1.1E+02 0.0024 28.6 8.1 69 624-694 32-104 (149)
380 TIGR02996 rpt_mate_G_obs repea 48.7 39 0.00084 24.5 4.1 29 90-118 4-32 (42)
381 KOG0686 COP9 signalosome, subu 47.9 1.4E+02 0.003 33.2 10.1 68 424-492 151-218 (466)
382 PF04781 DUF627: Protein of un 47.8 2.1E+02 0.0046 25.8 10.1 46 606-653 62-107 (111)
383 PF09613 HrpB1_HrpK: Bacterial 47.1 2.8E+02 0.006 26.9 15.3 57 600-658 22-78 (160)
384 COG4649 Uncharacterized protei 47.0 2.9E+02 0.0064 27.2 18.0 146 387-560 61-211 (221)
385 PF10516 SHNi-TPR: SHNi-TPR; 46.0 23 0.0005 25.1 2.7 29 462-490 2-30 (38)
386 PF11846 DUF3366: Domain of un 44.7 67 0.0015 32.1 7.1 50 604-656 127-176 (193)
387 PRK13184 pknD serine/threonine 44.6 2.2E+02 0.0047 36.0 12.5 55 603-660 534-588 (932)
388 PF11846 DUF3366: Domain of un 44.3 81 0.0018 31.5 7.6 50 530-582 126-175 (193)
389 PF10516 SHNi-TPR: SHNi-TPR; 44.2 41 0.00088 23.8 3.7 29 550-578 2-30 (38)
390 KOG1166 Mitotic checkpoint ser 44.1 6.2E+02 0.014 32.2 16.2 88 565-656 55-146 (974)
391 TIGR02996 rpt_mate_G_obs repea 43.4 51 0.0011 23.9 4.0 33 609-643 3-35 (42)
392 TIGR00756 PPR pentatricopeptid 42.9 45 0.00098 21.9 3.9 26 426-451 3-28 (35)
393 KOG1920 IkappaB kinase complex 42.6 8.6E+02 0.019 31.3 19.4 175 84-279 844-1029(1265)
394 PF07720 TPR_3: Tetratricopept 41.9 83 0.0018 21.9 4.9 31 626-656 3-35 (36)
395 cd02684 MIT_2 MIT: domain cont 40.9 2.1E+02 0.0045 23.7 8.3 34 531-579 3-36 (75)
396 COG2912 Uncharacterized conser 40.8 99 0.0021 32.6 7.5 60 524-585 190-249 (269)
397 PF12457 TIP_N: Tuftelin inter 40.8 22 0.00048 32.0 2.4 14 823-836 69-82 (109)
398 KOG4279 Serine/threonine prote 40.6 2E+02 0.0044 34.5 10.4 40 716-755 408-448 (1226)
399 COG3914 Spy Predicted O-linked 40.5 6.8E+02 0.015 29.5 15.2 113 421-557 63-184 (620)
400 KOG4814 Uncharacterized conser 39.4 2.7E+02 0.0059 32.9 11.1 103 462-580 356-459 (872)
401 cd02683 MIT_1 MIT: domain cont 38.3 1.2E+02 0.0026 25.4 6.3 21 559-579 16-36 (77)
402 KOG2034 Vacuolar sorting prote 38.0 6.3E+02 0.014 31.3 14.2 177 61-274 363-555 (911)
403 PF13812 PPR_3: Pentatricopept 38.0 79 0.0017 20.7 4.5 28 517-544 3-30 (34)
404 KOG1972 Uncharacterized conser 37.8 1.1E+02 0.0024 36.9 8.0 19 52-70 755-773 (913)
405 KOG4279 Serine/threonine prote 37.3 3.1E+02 0.0066 33.1 11.2 177 422-620 200-398 (1226)
406 COG5290 IkappaB kinase complex 37.2 5E+02 0.011 31.6 12.9 108 84-194 828-946 (1243)
407 PF04212 MIT: MIT (microtubule 36.9 1.3E+02 0.0028 24.3 6.3 23 556-578 12-34 (69)
408 PF12968 DUF3856: Domain of Un 36.1 3.5E+02 0.0075 24.9 11.9 101 516-616 8-128 (144)
409 cd02680 MIT_calpain7_2 MIT: do 34.0 54 0.0012 27.3 3.5 17 637-653 19-35 (75)
410 PF10037 MRP-S27: Mitochondria 33.8 2.6E+02 0.0055 32.0 10.0 49 243-293 134-182 (429)
411 PHA02537 M terminase endonucle 33.7 3E+02 0.0066 28.4 9.6 26 432-457 92-117 (230)
412 KOG2114 Vacuolar assembly/sort 33.3 1E+03 0.022 29.5 17.6 30 549-578 368-397 (933)
413 KOG0276 Vesicle coat complex C 33.3 2.9E+02 0.0063 32.5 10.1 81 424-544 615-695 (794)
414 PF09205 DUF1955: Domain of un 32.4 2.8E+02 0.0061 26.0 8.0 51 601-653 99-149 (161)
415 PF09670 Cas_Cas02710: CRISPR- 32.2 7.7E+02 0.017 27.7 14.4 24 595-618 248-271 (379)
416 KOG1839 Uncharacterized protei 32.0 4E+02 0.0086 34.5 11.8 156 405-577 960-1127(1236)
417 COG1747 Uncharacterized N-term 31.7 8.8E+02 0.019 28.2 23.4 190 378-599 59-253 (711)
418 cd02682 MIT_AAA_Arch MIT: doma 30.8 1.5E+02 0.0031 24.8 5.5 25 643-667 32-56 (75)
419 PRK15490 Vi polysaccharide bio 30.7 3.4E+02 0.0074 32.2 10.5 80 472-573 19-98 (578)
420 KOG2300 Uncharacterized conser 30.6 8.9E+02 0.019 27.9 43.4 196 523-757 331-551 (629)
421 KOG2758 Translation initiation 29.9 7.5E+02 0.016 26.9 20.5 157 514-689 34-196 (432)
422 KOG1310 WD40 repeat protein [G 29.6 2.1E+02 0.0045 33.1 8.0 88 565-656 390-477 (758)
423 PRK12798 chemotaxis protein; R 29.5 8.7E+02 0.019 27.5 24.2 198 525-730 91-290 (421)
424 PF10373 EST1_DNA_bind: Est1 D 29.3 1.8E+02 0.0038 30.7 7.7 49 534-583 1-49 (278)
425 KOG3807 Predicted membrane pro 29.2 7.7E+02 0.017 26.8 17.7 173 536-731 205-395 (556)
426 PF00244 14-3-3: 14-3-3 protei 28.1 7E+02 0.015 25.9 13.0 49 604-652 142-197 (236)
427 PF09205 DUF1955: Domain of un 27.5 5.3E+02 0.011 24.3 8.9 62 516-577 87-148 (161)
428 KOG1972 Uncharacterized conser 27.5 1.9E+02 0.0042 35.0 7.7 25 90-114 751-775 (913)
429 KOG0276 Vesicle coat complex C 27.4 1.1E+03 0.023 28.1 13.2 136 550-726 615-750 (794)
430 KOG1310 WD40 repeat protein [G 27.3 2E+02 0.0044 33.1 7.5 85 398-492 389-476 (758)
431 PF10579 Rapsyn_N: Rapsyn N-te 26.8 3.9E+02 0.0084 22.5 7.3 45 600-646 18-65 (80)
432 PF13226 DUF4034: Domain of un 25.8 8.4E+02 0.018 26.1 12.6 117 36-154 10-149 (277)
433 KOG4014 Uncharacterized conser 25.5 6.8E+02 0.015 24.9 14.9 98 381-492 33-143 (248)
434 PRK13184 pknD serine/threonine 24.9 1.5E+03 0.033 28.8 29.0 300 400-725 536-868 (932)
435 PF10579 Rapsyn_N: Rapsyn N-te 24.5 1.8E+02 0.0039 24.5 4.9 47 709-757 18-64 (80)
436 PF11817 Foie-gras_1: Foie gra 23.8 5.2E+02 0.011 27.0 9.8 82 402-484 157-241 (247)
437 smart00299 CLH Clathrin heavy 23.4 5.9E+02 0.013 23.5 12.6 13 249-261 125-137 (140)
438 PF12921 ATP13: Mitochondrial 23.2 6E+02 0.013 23.5 11.9 97 519-616 6-118 (126)
439 KOG1166 Mitotic checkpoint ser 23.1 1.2E+03 0.026 29.7 13.9 72 675-749 93-165 (974)
440 COG4941 Predicted RNA polymera 23.0 1E+03 0.022 26.1 13.5 38 513-550 363-400 (415)
441 COG2912 Uncharacterized conser 22.6 5.1E+02 0.011 27.5 9.0 65 470-554 190-254 (269)
442 COG4649 Uncharacterized protei 22.3 7.7E+02 0.017 24.4 13.6 122 601-726 71-196 (221)
443 PF10373 EST1_DNA_bind: Est1 D 21.9 3.3E+02 0.0072 28.6 8.2 45 442-490 1-45 (278)
444 PF12968 DUF3856: Domain of Un 21.7 6.4E+02 0.014 23.2 12.9 105 462-578 8-129 (144)
445 smart00101 14_3_3 14-3-3 homol 21.4 9.5E+02 0.021 25.1 16.0 50 604-653 144-200 (244)
446 cd02678 MIT_VPS4 MIT: domain c 21.4 4.7E+02 0.01 21.5 8.5 64 531-614 3-70 (75)
447 COG5536 BET4 Protein prenyltra 21.3 3E+02 0.0066 29.1 6.9 93 16-110 97-192 (328)
448 COG4455 ImpE Protein of avirul 21.1 9.2E+02 0.02 24.8 13.3 34 515-548 35-68 (273)
449 PF14929 TAF1_subA: TAF RNA Po 21.0 1.4E+03 0.031 27.0 23.8 153 601-765 322-487 (547)
450 KOG1839 Uncharacterized protei 20.4 5.4E+02 0.012 33.3 10.1 98 517-617 975-1086(1236)
451 cd02677 MIT_SNX15 MIT: domain 20.2 4.8E+02 0.01 21.6 6.8 13 605-617 4-16 (75)
No 1
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=3.2e-170 Score=1357.87 Aligned_cols=828 Identities=58% Similarity=0.983 Sum_probs=777.7
Q ss_pred CCccCCCCCCCcchHHHHHHhhCCCChHHHHHHHHHHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCC
Q 002477 1 MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80 (917)
Q Consensus 1 ~~~~~~~~~~~~~~~~E~~l~~~P~~~~~W~~yi~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~ 80 (917)
+..++++.+.++|++||++|+|||+|+++|+|||+++++.+.+.++++|||||+.+|+|+++|+.||..+...+++.|++
T Consensus 1 ~~~n~dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T 80 (835)
T KOG2047|consen 1 VIENVDLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPT 80 (835)
T ss_pred CCCCccccccccccchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHH
Q 002477 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (917)
Q Consensus 81 ~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~ 160 (917)
.+.|..++++|+|||..+|+||+||++||+|+++|+++|++|++|+|||+++|++||.+||.+|++|+.+++.| +++++
T Consensus 81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~r 159 (835)
T KOG2047|consen 81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIR 159 (835)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhh
Q 002477 161 VYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240 (917)
Q Consensus 161 ~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (917)
+|+|||++.|.+.++||++|...+++++|++.|..++|++.|.|..|++++++|.++|+++.++|+.+.+++++++||+|
T Consensus 160 vyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 160 VYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 002477 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (917)
Q Consensus 241 i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~ 320 (917)
+.+|||+.|.||++||+||++.|.|++|+++|++++.++.|++||++||++|++||++.++.+|+ +... ...
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~-~~~------ 311 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADE-ESG------ 311 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhh-ccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999998 3210 000
Q ss_pred CCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCch
Q 002477 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPT 400 (917)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~ 400 (917)
-.++..+++.+|++||.||+++|.++|+|+||||||||+.|++++.++++++.
T Consensus 312 ---------------------------n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~ 364 (835)
T KOG2047|consen 312 ---------------------------NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAA 364 (835)
T ss_pred ---------------------------ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChH
Confidence 00344579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHH
Q 002477 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (917)
Q Consensus 401 ~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A 480 (917)
+.+.+|++||++++|.+++|+.+.+|+.||++|+.+|+++.||.+|++++++++..+++|+.+||.||+|++++.+++.|
T Consensus 365 ~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 365 EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 002477 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (917)
Q Consensus 481 ~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~ 560 (917)
++++++|+.+|.... +.+.++..|+|.++++|+++|.+|++++++.|.+++++.+|+++++++..+|++.+|||.|++
T Consensus 445 l~lm~~A~~vP~~~~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPE--LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred HHHHHhhhcCCCchh--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999987322 456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH
Q 002477 561 EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (917)
Q Consensus 561 ~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~ 640 (917)
++.+|++||++|||+|.+|++|+..+||+.|+.+|..|+|+.++|+||++|||||+.||+..++.+|+.||++|++.|..
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 002477 641 KRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720 (917)
Q Consensus 641 ~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~ 720 (917)
.+|+++|+||...++....+.||++||.++....|+..+|++|++||+. +|++.+..||++||++|.++|+++|||+||
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhccc-chhhhhhHHHHhhhhhhchhHhhhHhhhcCCc
Q 002477 721 VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS-QTHFILPEYLMQKDQRLSIDDAKDKLKQAGVH 799 (917)
Q Consensus 721 ~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 799 (917)
.++++.|||+.+++||++|..||++|||++|.++||||||+|+++|+ ++.++..+++... .|.+.+..++.|
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa~yn~~~~~~a~q~~~~~-------~~~~~~~~~~a~ 754 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQATYNTDVNSMAHQMLKIN-------FAASDLAPGAAP 754 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhh-------hhhhhccccCCC
Confidence 99999999999999999999999999999999999999999999995 8888888886644 255666777788
Q ss_pred ccHHHHHHHhhcccccCCCCCCCCCcccceecCCcCCCCCCCCCCCCCCccCCCCCCCchhhh----hhhhcccccchhh
Q 002477 800 EDEMAALERQLAPAANNGNAKDSSRKVGFVSAGVESQTDGGIKTTANHEDIELPDESDSEEEE----KVEIAQKDVPSAV 875 (917)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 875 (917)
.|.|.+||++-.+.+ .+.+...++++||+|.++... ......||||||||+||||||++ ++.++ +||++|
T Consensus 755 md~m~~le~~q~a~e--~~~~p~~~~i~fv~s~~~~~~--~~~s~vnpdEidl~~ded~~e~d~~~~~~~~~--~vpa~v 828 (835)
T KOG2047|consen 755 MDHMPLLEQRQLAAE--ATQQPLKSNIGFVRSDASELT--QEYSQVNPDEIDLDEDEDEDEDDGEDNEVRLE--SVPAAV 828 (835)
T ss_pred CChHHHHHHHhhhcc--ccccccccceeeEeccccccc--cccCcCCccccccCCCcccccccCCcchhhhh--hccHHH
Confidence 999999999733222 223444589999999775322 22345799999999987776554 34444 999999
Q ss_pred hcccc
Q 002477 876 YGGLA 880 (917)
Q Consensus 876 ~~~~~ 880 (917)
|||++
T Consensus 829 fg~lk 833 (835)
T KOG2047|consen 829 FGSLK 833 (835)
T ss_pred hcccc
Confidence 99998
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.4e-47 Score=395.17 Aligned_cols=481 Identities=22% Similarity=0.398 Sum_probs=419.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHH
Q 002477 45 RFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRT 124 (917)
Q Consensus 45 ~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~ 124 (917)
.+.-||-.++.+--+...|..|++|+. .+.+++.|+++|||||..++.+..+|+.|+++.|+.+.+.+||.+
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEe--------sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv 129 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEE--------SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNV 129 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHH
Confidence 456799999999999999999999995 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC--HHHHHHHHHhcccHHHHHHHHHHHhcCCcc
Q 002477 125 FDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH--IEDFIEFLVKSKLWQEAAERLASVLNDDQF 202 (917)
Q Consensus 125 ~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~--~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~ 202 (917)
+|||+..+| .-..+|..|+-+....|+. ..|+.+|.|.+...|+. |..||.+-++.+.++.|..+|.+.+--
T Consensus 130 ~dRAvt~lP--RVdqlWyKY~ymEE~LgNi-~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--- 203 (677)
T KOG1915|consen 130 WDRAVTILP--RVDQLWYKYIYMEEMLGNI-AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--- 203 (677)
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHHhccc-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---
Confidence 999999999 5689999999999999987 99999999999999985 899999999999999999999998842
Q ss_pred ccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccch--hhHHHHHHHHHHHHhCcHHHHHHHHHHhhhccc
Q 002477 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE--VGRLWTSLADYYIRRELFEKARDIFEEGMMTVV 280 (917)
Q Consensus 203 ~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~ 280 (917)
....+.|+.++.+..+|+... .+.+++..++..+.++ ...+..+.|.+..+++.++.|+-+|+-||...|
T Consensus 204 -----HP~v~~wikyarFE~k~g~~~---~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 204 -----HPKVSNWIKYARFEEKHGNVA---LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred -----cccHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 245778999999999998533 4778888888877654 357899999999999999999999999999998
Q ss_pred chhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHH
Q 002477 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360 (917)
Q Consensus 281 ~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 360 (917)
..+. ..+|..|..||+++... . +.++ . -+..+--
T Consensus 276 k~ra-eeL~k~~~~fEKqfGd~----------~----------gIEd--------------~-----------Iv~KRk~ 309 (677)
T KOG1915|consen 276 KGRA-EELYKKYTAFEKQFGDK----------E----------GIED--------------A-----------IVGKRKF 309 (677)
T ss_pred cccH-HHHHHHHHHHHHHhcch----------h----------hhHH--------------H-----------Hhhhhhh
Confidence 7754 47899999999875111 1 0110 1 1333333
Q ss_pred HHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCcc---CCCcHHHHHHHHHHHH-
Q 002477 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKA---VGKPHTLWVAFAKLYE- 434 (917)
Q Consensus 361 ~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~---~~~~~~lw~~~a~~~~- 434 (917)
.+|. .++.||.|.+.|..++.|.+ |+.+.+.++|++||..++|... +..+.-+|+.||.+.+
T Consensus 310 qYE~------------~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 310 QYEK------------EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHH------------HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 67889999999999999986 5778899999999999888321 2347789999998765
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhcc
Q 002477 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (917)
Q Consensus 435 ~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (917)
...|.+.++.+|..+|++-|.....++.+|+.||.+++++.+...|++++-.|+...| .
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP---------------------K 436 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP---------------------K 436 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC---------------------c
Confidence 5789999999999999999999899999999999999999999999999999997755 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh---HHHHHHH
Q 002477 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV---KDIWVTY 591 (917)
Q Consensus 515 ~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~---~~lw~~y 591 (917)
.+++..|+.++.+++++|.++.+|++.|+..|.+-.+|..||.++...|+.+.|+.+|+-||.. |.. .-+|..|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q---p~ldmpellwkaY 513 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ---PALDMPELLWKAY 513 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---cccccHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999984 432 3589999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHH
Q 002477 592 LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635 (917)
Q Consensus 592 l~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~ 635 (917)
++.-. ..+.+++||.+|++.|+..+. ..+|+.+|+|+.
T Consensus 514 IdFEi---~~~E~ekaR~LYerlL~rt~h---~kvWisFA~fe~ 551 (677)
T KOG1915|consen 514 IDFEI---EEGEFEKARALYERLLDRTQH---VKVWISFAKFEA 551 (677)
T ss_pred hhhhh---hcchHHHHHHHHHHHHHhccc---chHHHhHHHHhc
Confidence 97444 567899999999999999886 449999999997
No 3
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.2e-42 Score=374.97 Aligned_cols=616 Identities=19% Similarity=0.298 Sum_probs=489.8
Q ss_pred hHHHHHHhhCCCChHHHHHHHHHHH-hCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 002477 14 LLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (917)
Q Consensus 14 ~~~E~~l~~~P~~~~~W~~yi~~~~-~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~e 92 (917)
+.+..-...||.++..|+...+.+. .+.++.+..+.++.|..+|.|.++|..-+++. ..+.+..+.-
T Consensus 272 ~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh------------p~d~aK~vvA 339 (913)
T KOG0495|consen 272 LLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH------------PPDVAKTVVA 339 (913)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC------------ChHHHHHHHH
Confidence 4566677889999999999988654 56777888888999999999999999877653 2345888999
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC
Q 002477 93 RALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (917)
Q Consensus 93 raL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~ 172 (917)
.|+.++|+++++|+..+.+... ...-.+++.+||+.+| .+.++|.....++ .+ +.|+.++.|+++.+|.+
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP--~sv~LWKaAVelE----~~-~darilL~rAveccp~s 409 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIP--RSVRLWKAAVELE----EP-EDARILLERAVECCPQS 409 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCC--chHHHHHHHHhcc----Ch-HHHHHHHHHHHHhccch
Confidence 9999999999999999998753 4556899999999999 6899999999885 44 67999999999999998
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchh----
Q 002477 173 IEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV---- 248 (917)
Q Consensus 173 ~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~---- 248 (917)
.+-++. |.+...|..|.+++.+.-.. -++.+++|+....+.+.++.. ..+++|+.+|+....-+-
T Consensus 410 ~dLwlA-larLetYenAkkvLNkaRe~-------iptd~~IWitaa~LEE~ngn~---~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 410 MDLWLA-LARLETYENAKKVLNKAREI-------IPTDREIWITAAKLEEANGNV---DMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhhcceeec
Confidence 765543 45556788898888777654 357788999999998887742 247888888876443221
Q ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhh
Q 002477 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (917)
Q Consensus 249 ~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 328 (917)
-.-|++-|.-.-+.|..-.+-.+..-.| ..+-. +++
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avi----------------------------gigvE--eed-------------- 514 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVI----------------------------GIGVE--EED-------------- 514 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHH----------------------------hhccc--cch--------------
Confidence 1346655554444443333322222222 21110 000
Q ss_pred HhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc--CCchHHHHHH
Q 002477 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTY 406 (917)
Q Consensus 329 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~--~~~~~a~~~y 406 (917)
....|..+..... ....++- ...+....|+..|..-..|+..+.+.+ |..+....++
T Consensus 515 ---------------~~~tw~~da~~~~-k~~~~~c-----arAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 515 ---------------RKSTWLDDAQSCE-KRPAIEC-----ARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ---------------hHhHHhhhHHHHH-hcchHHH-----HHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0011111111000 0001110 011223368889999999999988886 4556778899
Q ss_pred HHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002477 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (917)
Q Consensus 407 ~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~ 486 (917)
++|+.. +++...+|++||+-++..|+...||.++..++..+|++. .+|+.-..++..+.+++.|+.+|.+
T Consensus 574 qkav~~------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse----eiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 574 QKAVEQ------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE----EIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHh------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH----HHHHHHHHHhhccccHHHHHHHHHH
Confidence 999976 347889999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHH
Q 002477 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE 566 (917)
Q Consensus 487 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e 566 (917)
+....+ ...+|+.++.++..++..++|+.+++++++..|..+.+|+.+|+++++.++.+
T Consensus 644 ar~~sg---------------------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 644 ARSISG---------------------TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HhccCC---------------------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 998766 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 002477 567 DAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKV 646 (917)
Q Consensus 567 ~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~ 646 (917)
.|+..|..|++. +|++..+|.. +..+.+.. +.+-+||.+++++.-.+|. +..+|+...++|.+.|+.+.|...
T Consensus 703 ~aR~aY~~G~k~--cP~~ipLWll-LakleEk~--~~~~rAR~ildrarlkNPk--~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 703 MAREAYLQGTKK--CPNSIPLWLL-LAKLEEKD--GQLVRARSILDRARLKNPK--NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHhcccc--CCCCchHHHH-HHHHHHHh--cchhhHHHHHHHHHhcCCC--cchhHHHHHHHHHHcCCHHHHHHH
Confidence 999999999996 9999999996 45777643 4799999999999999999 789999999999999999999999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 647 YDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 647 y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
.-+|++.+|.+..+|.-.+++.. ...-+..+..|++. +-++. .+.+..|.+......+++||++|++|++.
T Consensus 776 makALQecp~sg~LWaEaI~le~------~~~rkTks~DALkk-ce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEP------RPQRKTKSIDALKK-CEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhcc------CcccchHHHHHHHh-ccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998888877766652 22225566677777 65554 67888999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhHH
Q 002477 727 ADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEY 776 (917)
Q Consensus 727 ~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~~ 776 (917)
+|+ .+++|..+..||.+||+++.-++++...-+..++|...|...+.-
T Consensus 847 -d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 847 -DPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred -CCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 898 999999999999999999999999965555666677777766553
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.2e-40 Score=344.62 Aligned_cols=508 Identities=22% Similarity=0.337 Sum_probs=408.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHH
Q 002477 87 LNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (917)
Q Consensus 87 a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l 166 (917)
-+..||-.+..+.-+...|+.|++|...|+.+..||.+|+|||...- .+..+|..|+.|.-+..+. ..|+.++.|++
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~v-NhARNv~dRAv 134 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQV-NHARNVWDRAV 134 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhH-hHHHHHHHHHH
Confidence 35788888888888899999999999999999999999999998876 5788999999998877766 89999999999
Q ss_pred ccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccc
Q 002477 167 KYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD 246 (917)
Q Consensus 167 ~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 246 (917)
.+-|--
T Consensus 135 t~lPRV-------------------------------------------------------------------------- 140 (677)
T KOG1915|consen 135 TILPRV-------------------------------------------------------------------------- 140 (677)
T ss_pred HhcchH--------------------------------------------------------------------------
Confidence 876651
Q ss_pred hhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchh
Q 002477 247 EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDE 326 (917)
Q Consensus 247 ~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 326 (917)
.++|+.+.-+....|+..-||.+|++-+.=-|.. +-|..|..||...
T Consensus 141 --dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e----qaW~sfI~fElRy--------------------------- 187 (677)
T KOG1915|consen 141 --DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE----QAWLSFIKFELRY--------------------------- 187 (677)
T ss_pred --HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHh---------------------------
Confidence 2467776666677788888888888888766655 3455666666321
Q ss_pred hhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHH
Q 002477 327 DIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTY 406 (917)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y 406 (917)
+..+.|..+|
T Consensus 188 ----------------------------------------------------------------------keieraR~IY 197 (677)
T KOG1915|consen 188 ----------------------------------------------------------------------KEIERARSIY 197 (677)
T ss_pred ----------------------------------------------------------------------hHHHHHHHHH
Confidence 1223467778
Q ss_pred HHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002477 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (917)
Q Consensus 407 ~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~ 486 (917)
++-+ .+.| ..+.|+.||+|..++|+...||.+|++|+..-.. ....+.+....|.++.+++.++.|+-+|+=
T Consensus 198 erfV-~~HP------~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 198 ERFV-LVHP------KVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHh-eecc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 3455 5788999999999999999999999999985433 233457889999999999999999999999
Q ss_pred HHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHH--------HHHHHHHHhccCCCHHHHHHHHHH
Q 002477 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST--------RAVYERILDLRIATPQIIINYALL 558 (917)
Q Consensus 487 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A--------~~~y~~al~~~p~~~~~~~~~a~~ 558 (917)
|+..-|. .....++..|..++.+.|+.... +--|++.+..+|.+-+.|..|..+
T Consensus 270 Ald~~pk------------------~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL 331 (677)
T KOG1915|consen 270 ALDHIPK------------------GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRL 331 (677)
T ss_pred HHHhcCc------------------ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHH
Confidence 9965330 12468889999999999876433 346899999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHhhccCCCCh-HHHHHHHHHHH-----HHHhCCCChHHHHHHHHHHHHhCCcCC--cHHHHHHH
Q 002477 559 LEEHKYFEDAFRVYERGVKIFKYPHV-KDIWVTYLSKF-----VKRYGKTKLERARELFENAVETAPADA--VKPLYLQY 630 (917)
Q Consensus 559 ~~~~g~~e~A~~~~eral~~f~~P~~-~~lw~~yl~~~-----~~~~~~~~~e~Ar~lfe~al~~~p~~~--~~~l~~~~ 630 (917)
.+..|+.+.-..+||+||.-. .|.+ ...|..|+-.. .......+.+++|++|..||++.|.+. -..+|++|
T Consensus 332 ~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMY 410 (677)
T ss_pred HHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 999999999999999999963 2322 33455554332 222356789999999999999999862 36799999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 002477 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710 (917)
Q Consensus 631 a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~ 710 (917)
|+|+.++.+...|++++-.|+-.+|.+ -+|.+||....+++.++.+|.+|++-|+- .|.+. ..|..||.+|..+
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe~c--~~W~kyaElE~~L 484 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEF-SPENC--YAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChHhh--HHHHHHHHHHHHh
Confidence 999999999999999999999999974 47899999999999999999999999999 88877 5699999999999
Q ss_pred CChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhc-ccchhhhhhHHHHhh---------
Q 002477 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSAS-YSQTHFILPEYLMQK--------- 780 (917)
Q Consensus 711 g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~-~~~~~~~~~~~~~~~--------- 780 (917)
|+.||||+||+-|++...-+....+|..|++||+..|..+.+|.+++ |-++.+ +.+||..+|++-...
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe--rlL~rt~h~kvWisFA~fe~s~~~~~~~~~~ 562 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE--RLLDRTQHVKVWISFAKFEASASEGQEDEDL 562 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH--HHHHhcccchHHHhHHHHhccccccccccch
Confidence 99999999999999863223445999999999999999999999994 666655 568999999884411
Q ss_pred -----------hhhhchhHhhhHhhhcCCcccHHHHHHHh
Q 002477 781 -----------DQRLSIDDAKDKLKQAGVHEDEMAALERQ 809 (917)
Q Consensus 781 -----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 809 (917)
.++..+++|+..+++.+........||.=
T Consensus 563 ~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw 602 (677)
T KOG1915|consen 563 AELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAW 602 (677)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 12334455666666666666677788763
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-35 Score=368.68 Aligned_cols=693 Identities=15% Similarity=0.108 Sum_probs=521.0
Q ss_pred chHHHHHHhhCCCChHHHHHHHHH-HHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 002477 13 DLLYEEELLRNPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTF 91 (917)
Q Consensus 13 ~~~~E~~l~~~P~~~~~W~~yi~~-~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~ 91 (917)
--.|+..+..+|.+...|...... ...+.+..+..+++++++.+|.+...|........ ..++++.|...|
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~A~~~~ 216 (899)
T TIGR02917 145 QKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL--------SLGNIELALAAY 216 (899)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--------hcCCHHHHHHHH
Confidence 346788899999999999888764 45678888999999999999999999988777663 567899999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCC
Q 002477 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171 (917)
Q Consensus 92 eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~ 171 (917)
++++...|.++.+|...+..++..|+++.|...++++++..|. +...+...+......|.+ +.|...|+++++.+|+
T Consensus 217 ~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~~~ 293 (899)
T TIGR02917 217 RKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN--SPLAHYLKALVDFQKKNY-EDARETLQDALKSAPE 293 (899)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999994 555555555555667777 8999999999999998
Q ss_pred CHHHHH---HHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchh
Q 002477 172 HIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV 248 (917)
Q Consensus 172 ~~~~~i---~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 248 (917)
+...+. ..+...|++++|...+.+++... +.....+..+...+...++.. .+...++..+...|..
T Consensus 294 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~g~~~---~A~~~~~~~~~~~~~~- 362 (899)
T TIGR02917 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-------PNSHQARRLLASIQLRLGRVD---EAIATLSPALGLDPDD- 362 (899)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCCC-
Confidence 754332 35678899999999999988642 223344555555444433321 3455666777766665
Q ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchH-HHHHHHH---HHHHHHHHH--HhcCCCCCccccccccccCC
Q 002477 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFS-VIFDSYS---QFEEIMVSA--KMAKPDLSVEEEEDDEEHGS 322 (917)
Q Consensus 249 ~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~-~i~~~y~---~fe~~~~~~--~~e~~~~~~~~~~~~~~~~~ 322 (917)
..+|..++..+.+.|++++|..+|++++...|...... .+-..|. .+++++... .++... +..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~-------- 431 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELG-------- 431 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC---cch--------
Confidence 56889999999999999999999999998776543321 1111111 111110000 000000 000
Q ss_pred cchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc--CCch
Q 002477 323 AEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPT 400 (917)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~--~~~~ 400 (917)
... +. + .......++.+..+..++. ++...|.+...|..++.++. ++.+
T Consensus 432 ----~~~--~~-----l------~~~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~ 482 (899)
T TIGR02917 432 ----RAD--LL-----L------ILSYLRSGQFDKALAAAKK------------LEKKQPDNASLHNLLGAIYLGKGDLA 482 (899)
T ss_pred ----hhH--HH-----H------HHHHHhcCCHHHHHHHHHH------------HHHhCCCCcHHHHHHHHHHHhCCCHH
Confidence 000 00 0 0000111223333333332 45567888888888877774 6788
Q ss_pred HHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHH
Q 002477 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (917)
Q Consensus 401 ~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A 480 (917)
+|+..|++++. ++| .+...|..++.++...|+++.|..+|++++...|.++ .++..++.++.+.|++++|
T Consensus 483 ~A~~~~~~a~~-~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 483 KAREAFEKALS-IEP-----DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL----RAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHHHHHHHHh-hCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHcCCHHHH
Confidence 99999999985 456 5678899999999999999999999999999988888 8899999999999999999
Q ss_pred HHHHHHHHcCCChhHHHhh------hhcCCch--------hhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 002477 481 LELMRRATAEPSVEVRRRV------AADGNEP--------VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (917)
Q Consensus 481 ~~~l~~al~~~~~~~~~~~------~~~~~~~--------~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p 546 (917)
+.++++++...|....... ...|... .....|.+..+|..++.++...|+++.|+..|+++++..|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999876553221111 1122211 1233567889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHH
Q 002477 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPL 626 (917)
Q Consensus 547 ~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l 626 (917)
.++.++..++.++...|++++|..+|++++.. .|++...|..++..+. ..++++.|..+++++.+..|. +...
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~ 705 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLL---AAKRTESAKKIAKSLQKQHPK--AALG 705 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCcC--ChHH
Confidence 99999999999999999999999999999996 7888888887665444 467899999999999999888 6788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 002477 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAEL 706 (917)
Q Consensus 627 ~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~l 706 (917)
+..+|.++...|++++|+..|++++...|++. .+..+.......|++++|...++++++. .|++. .++...+.+
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~--~~~~~la~~ 779 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ---NAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDA--VLRTALAEL 779 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCH--HHHHHHHHH
Confidence 89999999999999999999999999998862 2233344446788999999999999998 88765 678888999
Q ss_pred HHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhHHHHhhhhhhch
Q 002477 707 EKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSI 786 (917)
Q Consensus 707 e~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (917)
+...|+.++|..+|+++++. .|. ++.++..........|+ ..|.++++..-...+....++..++..+... ++.
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~ 853 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKK-APD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK---GEA 853 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc---CCH
Confidence 99999999999999999988 776 78888888888889999 7788888533333334445666666665554 777
Q ss_pred hHhhhHhhhc
Q 002477 787 DDAKDKLKQA 796 (917)
Q Consensus 787 ~~a~~~~~~~ 796 (917)
++|...+.++
T Consensus 854 ~~A~~~~~~a 863 (899)
T TIGR02917 854 DRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHH
Confidence 8887777766
No 6
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=329.19 Aligned_cols=540 Identities=21% Similarity=0.381 Sum_probs=403.0
Q ss_pred cchHHHHHHhhCCCChHHHHHHHHHHHhC---------ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCch
Q 002477 12 DDLLYEEELLRNPFSLKLWWRYLVAKREA---------PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82 (917)
Q Consensus 12 ~~~~~E~~l~~~P~~~~~W~~yi~~~~~~---------~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~ 82 (917)
-.+.||+++...|.|.+.|.+||+..... .+...+-.|||++........+|..|+.+.+ .++
T Consensus 45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~--------~Q~ 116 (835)
T KOG2047|consen 45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLI--------KQG 116 (835)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------hcc
Confidence 35789999999999999999999754321 3567788999999988888899999999985 788
Q ss_pred hHHHHHHHHHHHHHhcC--CChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhH--
Q 002477 83 EYETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS-- 158 (917)
Q Consensus 83 ~~~~a~~~~eraL~~~p--~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a-- 158 (917)
.....+.+|.|||..+| .+.+||-.|+.|....+....+.++|.|-|+..|. + -..|+.++...+.. ++|
T Consensus 117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~--~---~eeyie~L~~~d~~-~eaa~ 190 (835)
T KOG2047|consen 117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE--A---REEYIEYLAKSDRL-DEAAQ 190 (835)
T ss_pred hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH--H---HHHHHHHHHhccch-HHHHH
Confidence 89999999999999998 67799999999999999999999999999999993 2 23344444333332 333
Q ss_pred ------------------------------------------HHHHHHHHccCCCC----HHHHHHHHHhcccHHHHHHH
Q 002477 159 ------------------------------------------LRVYRRYLKYDPSH----IEDFIEFLVKSKLWQEAAER 192 (917)
Q Consensus 159 ------------------------------------------~~~~~r~l~~~P~~----~~~~i~~l~~~~~~~~A~~~ 192 (917)
-.+.|..+...|+. |..+..|+++.|.+++|..+
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDv 270 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDV 270 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33344444444443 45666799999999999999
Q ss_pred HHHHhcCC----cccc--------------------------ccCCCchHHHHHHH-H------------HHhccccccc
Q 002477 193 LASVLNDD----QFYS--------------------------IKGKTKHRLWLELC-D------------LLTTHATEIS 229 (917)
Q Consensus 193 l~~~l~~~----~~~~--------------------------~~~~~~~~lw~~~~-~------------~~~~~~~~~~ 229 (917)
|.+.+... +|.. .....+.++-..-. . ++.+++..+.
T Consensus 271 yeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 271 YEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 99888541 0100 00000111110000 1 1223333221
Q ss_pred -ccc-----------HHHHHHhhhhc-----ccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhc-ccchhchHHHHHH
Q 002477 230 -GLN-----------VDAIIRGGIRK-----FTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT-VVTVRDFSVIFDS 291 (917)
Q Consensus 230 -~~~-----------~~~~l~~~i~~-----~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~-~~~~~d~~~i~~~ 291 (917)
+.+ .-..+.++++. -+...+.+|+.+|++|...|+.+.||.+|++++.. .+++.|+..+|..
T Consensus 351 eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 351 EWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred HHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 111 11233344432 23556889999999999999999999999999984 5788899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchh
Q 002477 292 YSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPE 371 (917)
Q Consensus 292 y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~ 371 (917)
+++.|..- ..++.++..++. +.
T Consensus 431 waemElrh-----------------------------------------------------~~~~~Al~lm~~----A~- 452 (835)
T KOG2047|consen 431 WAEMELRH-----------------------------------------------------ENFEAALKLMRR----AT- 452 (835)
T ss_pred HHHHHHhh-----------------------------------------------------hhHHHHHHHHHh----hh-
Confidence 99766320 012222222211 10
Q ss_pred hhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002477 372 LANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (917)
Q Consensus 372 ~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~ 451 (917)
.-|.+.. ...|.+...-...+ .++..+|..|+.+.+..|-++..+.+|++.+.
T Consensus 453 --------~vP~~~~-----~~~yd~~~pvQ~rl--------------hrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 453 --------HVPTNPE-----LEYYDNSEPVQARL--------------HRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred --------cCCCchh-----hhhhcCCCcHHHHH--------------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233322 22233221111111 24679999999999999999999999999999
Q ss_pred ccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHH-HHcC-
Q 002477 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE-ESLG- 529 (917)
Q Consensus 452 ~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~-~~~g- 529 (917)
+.--+| .+-..||-+...+.-++++.++|+|.+.+.+ .|....+|+.|..-. .+.|
T Consensus 506 LriaTP----qii~NyAmfLEeh~yfeesFk~YErgI~LFk------------------~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 506 LRIATP----QIIINYAMFLEEHKYFEESFKAYERGISLFK------------------WPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HhcCCH----HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------------------CccHHHHHHHHHHHHHHHhcC
Confidence 887888 9999999999999999999999999998855 456789999998643 3343
Q ss_pred -CHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHH
Q 002477 530 -NLESTRAVYERILDLRIAT--PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (917)
Q Consensus 530 -~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~ 606 (917)
.++.|+.+|+++++.+|.. -.+++.||.++++.|-...|+.+|+|+....+..+..++|+.|+.+...-+| +.+
T Consensus 564 ~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG---v~~ 640 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG---VPR 640 (835)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 7899999999999988732 2478999999999999999999999999874333447899999999887776 789
Q ss_pred HHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcC
Q 002477 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG 675 (917)
Q Consensus 607 Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~ 675 (917)
.|.+|++||+..|++......+.+|.+|.+.|..++|+.+|..+-+.+++.....+|..+-.+..+.|+
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 999999999999998888999999999999999999999999999998887777788888777666666
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-34 Score=362.69 Aligned_cols=670 Identities=16% Similarity=0.125 Sum_probs=452.7
Q ss_pred hHHHHHHhhCCCChHHHHHHHHH-HHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 002477 14 LLYEEELLRNPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (917)
Q Consensus 14 ~~~E~~l~~~P~~~~~W~~yi~~-~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~e 92 (917)
..|+..+..+|.+...|...+.. ...+.+..+...++++++..|.+...+........ ..++++.|...|+
T Consensus 214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~A~~~~~ 285 (899)
T TIGR02917 214 AAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDF--------QKKNYEDARETLQ 285 (899)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH--------HhcCHHHHHHHHH
Confidence 46888999999999999888663 45667888888888888888887766554433331 3456777777777
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC
Q 002477 93 RALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (917)
Q Consensus 93 raL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~ 172 (917)
+++...|..+..+...+..+..+|+++.|...|++++...| .+...+...+......|.+ +.|...+++++...|.+
T Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~ 362 (899)
T TIGR02917 286 DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRV-DEAIATLSPALGLDPDD 362 (899)
T ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCC
Confidence 77777777777777777777777777777777777777777 3455666666666666666 77777777777777766
Q ss_pred HHHHH---HHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhh
Q 002477 173 IEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVG 249 (917)
Q Consensus 173 ~~~~i---~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 249 (917)
...+. ..+...|++++|...|.+++... +.....|..+...+...++. ..+...++.++...|+. .
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~-~ 431 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-------PENAAARTQLGISKLSQGDP---SEAIADLETAAQLDPEL-G 431 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHhhCCcc-h
Confidence 43332 35566777777777777766431 22233444444333322211 11233334444333332 2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhch-HHHHHHHH---HHHHHHHH--HHhcCCCCCccccccccccCCc
Q 002477 250 RLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDF-SVIFDSYS---QFEEIMVS--AKMAKPDLSVEEEEDDEEHGSA 323 (917)
Q Consensus 250 ~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~-~~i~~~y~---~fe~~~~~--~~~e~~~~~~~~~~~~~~~~~~ 323 (917)
..+..++..|.+.|++++|..++++.+...|..... ..+-..|. .++++... ..++... ...
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~--------- 499 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP---DFF--------- 499 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---CcH---------
Confidence 334444445555555555555555554443332211 00000000 00000000 0000000 000
Q ss_pred chhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHH--cCCchH
Q 002477 324 EDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTK 401 (917)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~--~~~~~~ 401 (917)
...+. .+......++.+.++..+++ ++..+|.++..|...+.++ .++.++
T Consensus 500 -----~~~~~-----------la~~~~~~g~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 500 -----PAAAN-----------LARIDIQEGNPDDAIQRFEK------------VLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred -----HHHHH-----------HHHHHHHCCCHHHHHHHHHH------------HHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 00000 00000111223333344443 4556788888888777776 367778
Q ss_pred HHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHH
Q 002477 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGAL 481 (917)
Q Consensus 402 a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~ 481 (917)
++..|++++.. +| .....|..++.+|...|+++.|..+|++++...|.++ .+|..++.++...|++++|+
T Consensus 552 A~~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 552 AVAWLEKAAEL-NP-----QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP----EAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHHHHHHHh-Cc-----cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHH
Confidence 88888888754 45 4567788888888888888888888888888888877 88888888888888888888
Q ss_pred HHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 002477 482 ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561 (917)
Q Consensus 482 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~ 561 (917)
..|++++...| .++..|..++.++...|++++|..+|++++...|.++..+..++.++..
T Consensus 622 ~~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 622 SSFKKLLALQP--------------------DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHhCC--------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 88888887644 3677888888888889999999999999999999889999999999999
Q ss_pred ccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHH
Q 002477 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641 (917)
Q Consensus 562 ~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~ 641 (917)
.|++++|..+++++... .|.....|...+..+. ..|++++|...|++++...|. + ..+..++.++...|+++
T Consensus 682 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~~~~~~~~--~-~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYL---RQKDYPAAIQAYRKALKRAPS--S-QNAIKLHRALLASGNTA 753 (899)
T ss_pred cCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCC--c-hHHHHHHHHHHHCCCHH
Confidence 99999999999998885 6777776765544333 457899999999999988887 3 66778888888899999
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 002477 642 RAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYV 721 (917)
Q Consensus 642 ~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~ 721 (917)
+|...++++++..|++.......+ ..+...|+.++|..+|+++++. .|++. ..+..++.++...|+ .+|+.+|+
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~-~p~~~--~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALA--ELYLAQKDYDKAIKHYRTVVKK-APDNA--VVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH--HHHHHCcCHHHHHHHHHHHHHh-CCCCH--HHHHHHHHHHHhcCc-HHHHHHHH
Confidence 999999999998888654443333 3335678899999999999988 77665 567888888888888 88999999
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhHHHHhhhhhhchhHhhhHhh
Q 002477 722 FASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLK 794 (917)
Q Consensus 722 ~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 794 (917)
++++. .|+ ++.+|..++.++...|+.+.|.++++..-......+.+.++++..+... |+.++|...+.
T Consensus 828 ~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~ 895 (899)
T TIGR02917 828 KALKL-APN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT---GRKAEARKELD 895 (899)
T ss_pred HHHhh-CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc---CCHHHHHHHHH
Confidence 99887 777 7788888888888899999999888644444444457777777777665 66777766654
No 8
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=311.74 Aligned_cols=578 Identities=19% Similarity=0.246 Sum_probs=468.3
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 002477 16 YEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERAL 95 (917)
Q Consensus 16 ~E~~l~~~P~~~~~W~~yi~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL 95 (917)
-++-+..+|.|.+.|+.-|+.. +...+..+--.|++.+|.|+.+|..-+.++. +...-..++.+||
T Consensus 308 I~~GCe~cprSeDvWLeaiRLh---p~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~-----------~~~~K~RVlRKAL 373 (913)
T KOG0495|consen 308 IMKGCEECPRSEDVWLEAIRLH---PPDVAKTVVANAVRFLPTSVRLWLKAADLES-----------DTKNKKRVLRKAL 373 (913)
T ss_pred HHHHHhhCCchHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCChhhhhhHHhhhh-----------HHHHHHHHHHHHH
Confidence 4566788999999999988843 3333555668999999999999999888873 3444567899999
Q ss_pred HhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHH
Q 002477 96 VTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED 175 (917)
Q Consensus 96 ~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~ 175 (917)
++.|.+.++|....++. .-+.||-++.||++.+| +|..+|..|.++.. + +.|+.++.++-+..|++.+.
T Consensus 374 e~iP~sv~LWKaAVelE----~~~darilL~rAveccp--~s~dLwlAlarLet----Y-enAkkvLNkaRe~iptd~~I 442 (913)
T KOG0495|consen 374 EHIPRSVRLWKAAVELE----EPEDARILLERAVECCP--QSMDLWLALARLET----Y-ENAKKVLNKAREIIPTDREI 442 (913)
T ss_pred HhCCchHHHHHHHHhcc----ChHHHHHHHHHHHHhcc--chHHHHHHHHHHHH----H-HHHHHHHHHHHhhCCCChhH
Confidence 99999999999988876 34459999999999999 78999999998865 3 78999999999999999888
Q ss_pred HHH---HHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhccc--chhhH
Q 002477 176 FIE---FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT--DEVGR 250 (917)
Q Consensus 176 ~i~---~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~ 250 (917)
||. ..-..|+.+...+++.+.+.. ........+..-|+.-++-+..-+..+ ...+|++..|..-- .+.-.
T Consensus 443 Witaa~LEE~ngn~~mv~kii~rgl~~--L~~ngv~i~rdqWl~eAe~~e~agsv~---TcQAIi~avigigvEeed~~~ 517 (913)
T KOG0495|consen 443 WITAAKLEEANGNVDMVEKIIDRGLSE--LQANGVEINRDQWLKEAEACEDAGSVI---TCQAIIRAVIGIGVEEEDRKS 517 (913)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--HhhcceeecHHHHHHHHHHHhhcCChh---hHHHHHHHHHhhccccchhHh
Confidence 874 345678888888888877632 111123456778988888777655433 45677776553222 22345
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHh
Q 002477 251 LWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRL 330 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (917)
-|+.-++.+.+.+.++-|+.||..+|+-.|... .||...++||+.. +
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~---slWlra~~~ek~h--------g---------------------- 564 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKK---SLWLRAAMFEKSH--------G---------------------- 564 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchh---HHHHHHHHHHHhc--------C----------------------
Confidence 799999999999999999999999999888764 5788888888652 1
Q ss_pred hhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHH--cCCchHHHHHHHH
Q 002477 331 DVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTE 408 (917)
Q Consensus 331 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~--~~~~~~a~~~y~~ 408 (917)
..+...+.|++ .+.+.|.....|+.+++.. .|+...++.++.+
T Consensus 565 -----------------------t~Esl~Allqk------------av~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 565 -----------------------TRESLEALLQK------------AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred -----------------------cHHHHHHHHHH------------HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 12222233443 5567899999999998876 4777889999999
Q ss_pred HHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002477 409 AVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT 488 (917)
Q Consensus 409 Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al 488 (917)
|+.. .| .+..+|+.-.++...+.+++.||.+|.++....|. . .+|+..+.++.-.++.++|++++++++
T Consensus 610 af~~-~p-----nseeiwlaavKle~en~e~eraR~llakar~~sgT-e----Rv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 610 AFEA-NP-----NSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E----RVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHh-CC-----CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c----hhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 9865 55 68899999999999999999999999999886554 3 899999999999999999999999999
Q ss_pred cCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHH
Q 002477 489 AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDA 568 (917)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A 568 (917)
+..| ...++|.+.++++++.++++.|+..|...+...|.++..|+.++.+.+..|..-.|
T Consensus 679 k~fp--------------------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 679 KSFP--------------------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HhCC--------------------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 8744 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 569 FRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 569 ~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
+.+++++.- ++|.+..+|..-+. +..| .|..+.|..+..+||+.||. +..+|..-..++-+-+...++...
T Consensus 739 R~ildrarl--kNPk~~~lwle~Ir-~ElR--~gn~~~a~~lmakALQecp~--sg~LWaEaI~le~~~~rkTks~DA-- 809 (913)
T KOG0495|consen 739 RSILDRARL--KNPKNALLWLESIR-MELR--AGNKEQAELLMAKALQECPS--SGLLWAEAIWLEPRPQRKTKSIDA-- 809 (913)
T ss_pred HHHHHHHHh--cCCCcchhHHHHHH-HHHH--cCCHHHHHHHHHHHHHhCCc--cchhHHHHHHhccCcccchHHHHH--
Confidence 999999998 59999999987653 4444 46799999999999999999 788999988888877775555554
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 002477 649 QATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFAD 728 (917)
Q Consensus 649 ~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~ 728 (917)
++.+..++.+.+--.-+ ......+++||..|+++++. .|++. +.|..|-.++..+|.-+.-.++|.++.+. .
T Consensus 810 --Lkkce~dphVllaia~l--fw~e~k~~kar~Wf~Ravk~-d~d~G--D~wa~fykfel~hG~eed~kev~~~c~~~-E 881 (913)
T KOG0495|consen 810 --LKKCEHDPHVLLAIAKL--FWSEKKIEKAREWFERAVKK-DPDNG--DAWAWFYKFELRHGTEEDQKEVLKKCETA-E 881 (913)
T ss_pred --HHhccCCchhHHHHHHH--HHHHHHHHHHHHHHHHHHcc-CCccc--hHHHHHHHHHHHhCCHHHHHHHHHHHhcc-C
Confidence 44555555544322222 24557899999999999999 88887 77999999999999999999999999865 9
Q ss_pred CCCCHHHHHHHH
Q 002477 729 PRSDTEFWNRWH 740 (917)
Q Consensus 729 P~~~~~~w~~~~ 740 (917)
|. ++.+|....
T Consensus 882 P~-hG~~W~avS 892 (913)
T KOG0495|consen 882 PT-HGELWQAVS 892 (913)
T ss_pred CC-CCcHHHHHh
Confidence 98 899998743
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.3e-29 Score=317.37 Aligned_cols=598 Identities=13% Similarity=0.101 Sum_probs=364.3
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~ 159 (917)
..++.+.|...++|++.+.|++|.++...+.+.+.+|+.+.|...++++++..| .+...|.....+...
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P--~~~~~~~~~~~~~~~--------- 108 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP--DSNAYRSSRTTMLLS--------- 108 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHhc---------
Confidence 667889999999999999999999999999999999999999999999999999 455555433322110
Q ss_pred HHHHHHHccCCCCH--HHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHH
Q 002477 160 RVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAII 237 (917)
Q Consensus 160 ~~~~r~l~~~P~~~--~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l 237 (917)
.|+.. -.....+...|++++|...|.+++... +....+-..+...+...+.. ...+...+
T Consensus 109 ---------~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-------p~~~~la~~y~~~~~~~~g~--~~~A~~~L 170 (1157)
T PRK11447 109 ---------TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-------PPELDLAVEYWRLVAKLPAQ--RPEAINQL 170 (1157)
T ss_pred ---------CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-------CCChHHHHHHHHHHhhCCcc--HHHHHHHH
Confidence 11111 112234555666666666666666431 11111111111111111100 11245566
Q ss_pred HhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 002477 238 RGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDD 317 (917)
Q Consensus 238 ~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~ 317 (917)
+..+..+|++ ..++..+|..+...|++++|...|++++...+...+...++.... .... ...
T Consensus 171 ~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l-----------~~~~---~~~--- 232 (1157)
T PRK11447 171 QRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI-----------KDMP---VSD--- 232 (1157)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH-----------hccC---CCh---
Confidence 6666777776 578999999999999999999999999874332211111110000 0000 000
Q ss_pred cccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcC
Q 002477 318 EEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEG 397 (917)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~ 397 (917)
.. ...+...+ .. ..+...+..+...++... ....+|.........+.+..+
T Consensus 233 --------~~--------~~~l~~~l--~~-~p~~~~~~~A~~~L~~~~----------~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 233 --------AS--------VAALQKYL--QV-FSDGDSVAAARSQLAEQQ----------KQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred --------hh--------HHHHHHHH--HH-CCCchHHHHHHHHHHHHH----------HhccCcchHHHHHHHHHHHCC
Confidence 00 00000000 00 011111222222222110 011234333222334444468
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhh--------HHHH--HHH
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL--------ASIW--CEW 467 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l--------~~~w--~~~ 467 (917)
++++|+..|++++.. +| .+..+|..+|.+|...|++++|+..|+++++.+|.+.... ...| ...
T Consensus 284 ~~~~A~~~l~~aL~~-~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 284 QGGKAIPELQQAVRA-NP-----KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CHHHHHHHHHHHHHh-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 899999999999964 66 6789999999999999999999999999999988764210 0122 334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 002477 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (917)
Q Consensus 468 a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~ 547 (917)
+....+.|++++|+..|++++...| .+...+..++.++...|++++|+..|++++..+|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P--------------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN--------------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 6678899999999999999998866 46778888899999999999999999999999999
Q ss_pred CHHHHHHHHHHHH------------------------------------------HccCHHHHHHHHHHHhhccCCCChH
Q 002477 548 TPQIIINYALLLE------------------------------------------EHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 548 ~~~~~~~~a~~~~------------------------------------------~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
++.++..++.++. ..|++++|+..|++++++ +|++.
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSV 495 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 8887766665542 345666666666666664 55555
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH--------------
Q 002477 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT-------------- 651 (917)
Q Consensus 586 ~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al-------------- 651 (917)
.++..+...+. ..|++++|...|+++++..|. ++..++.++.++...|+.++|+..++++.
T Consensus 496 ~~~~~LA~~~~---~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 496 WLTYRLAQDLR---QAGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 44443332222 345566666666666666665 44555555555444555554444443321
Q ss_pred --------------------------hhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 002477 652 --------------------------KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAE 705 (917)
Q Consensus 652 --------------------------~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~ 705 (917)
+..|.++...+.. ...+...|++++|+..|+++++. .|++. ..++.++.
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L--a~~~~~~g~~~~A~~~y~~al~~-~P~~~--~a~~~la~ 645 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL--ADWAQQRGDYAAARAAYQRVLTR-EPGNA--DARLGLIE 645 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH--HHHHHHcCCHHHHHHHHHHHHHh-CCCCH--HHHHHHHH
Confidence 1234433332222 22234567777888888888877 77665 56777777
Q ss_pred HHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhccc------chhhhhhHHHHh
Q 002477 706 LEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYS------QTHFILPEYLMQ 779 (917)
Q Consensus 706 le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~------~~~~~~~~~~~~ 779 (917)
++...|++++|+..|+++++. +|+ +...+..+.......|+.++|.++++.........+ .+....+.+...
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~-~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPAT-AND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhcc-CCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence 777778888888888877766 565 666777777777777888887777753222221111 122223443333
Q ss_pred hhhhhchhHhhhHhhhc
Q 002477 780 KDQRLSIDDAKDKLKQA 796 (917)
Q Consensus 780 ~~~~~~~~~a~~~~~~~ 796 (917)
. ++.++|.+.++++
T Consensus 724 ~---G~~~~A~~~y~~A 737 (1157)
T PRK11447 724 T---GQPQQALETYKDA 737 (1157)
T ss_pred c---CCHHHHHHHHHHH
Confidence 2 5666666666555
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.4e-28 Score=308.98 Aligned_cols=638 Identities=12% Similarity=0.070 Sum_probs=452.6
Q ss_pred HHHHHHhhCCCChHHHHHHHHH-HHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcC--------CCCCchhHH
Q 002477 15 LYEEELLRNPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKN--------LPITHPEYE 85 (917)
Q Consensus 15 ~~E~~l~~~P~~~~~W~~yi~~-~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~--------~~~~~~~~~ 85 (917)
.+++.+..+|.++..+..-++. ...+....+...++++++..|.+...|............+ .....++++
T Consensus 50 ~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~ 129 (1157)
T PRK11447 50 SLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTE 129 (1157)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHH
Confidence 4678888899999999888774 4577888999999999999999999886544432110000 012567899
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHh-hcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHH
Q 002477 86 TLNNTFERALVTMHKMPRIWIMYLETLT-SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (917)
Q Consensus 86 ~a~~~~eraL~~~p~~~~lw~~y~~~~~-~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r 164 (917)
.|..+|++++...|..+.+-..|..... ..++.+.|+..|+++++..| .+..++..++.+....|.. +.|...+++
T Consensus 130 eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~-~eAl~~l~~ 206 (1157)
T PRK11447 130 EALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRR-DEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCH-HHHHHHHHH
Confidence 9999999999998888765455544433 35789999999999999999 5789999999999888888 899999999
Q ss_pred HHccCCCCH---HHHHHHHHhcccHHHHHHHHHHHhcCCccc---------------cccCCCchHHHHHHHHHHhcccc
Q 002477 165 YLKYDPSHI---EDFIEFLVKSKLWQEAAERLASVLNDDQFY---------------SIKGKTKHRLWLELCDLLTTHAT 226 (917)
Q Consensus 165 ~l~~~P~~~---~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~---------------~~~~~~~~~lw~~~~~~~~~~~~ 226 (917)
++...+... ..+...+...+....+...+...+....-. ....+. ... ......+...++
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~-~~~-~~~G~~~~~~g~ 284 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA-FRA-RAQGLAAVDSGQ 284 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc-hHH-HHHHHHHHHCCC
Confidence 987544321 122222222233333333333333210000 000000 000 000111111111
Q ss_pred ccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHH---HHHHHHHHHH
Q 002477 227 EISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYS---QFEEIMVSAK 303 (917)
Q Consensus 227 ~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~---~fe~~~~~~~ 303 (917)
...+...+++++...|++ ..++..|+..|.+.|++++|+..|++++...|...... .+..+. .+...+..
T Consensus 285 ---~~~A~~~l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~-- 357 (1157)
T PRK11447 285 ---GGKAIPELQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQ-- 357 (1157)
T ss_pred ---HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHH--
Confidence 113567788889888876 67999999999999999999999999999877643211 011110 00000000
Q ss_pred hcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCC
Q 002477 304 MAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPH 383 (917)
Q Consensus 304 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~ 383 (917)
+......++.+.++..+++ +++.+|.
T Consensus 358 ------------------------------------------g~~~~~~g~~~eA~~~~~~------------Al~~~P~ 383 (1157)
T PRK11447 358 ------------------------------------------GDAALKANNLAQAERLYQQ------------ARQVDNT 383 (1157)
T ss_pred ------------------------------------------HHHHHHCCCHHHHHHHHHH------------HHHhCCC
Confidence 0000112234555556655 5667899
Q ss_pred CHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhh-
Q 002477 384 NVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL- 460 (917)
Q Consensus 384 ~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l- 460 (917)
+...+..++.++ .+++++|+..|+++++ ++| .+...|..++.+|. .++.++|...+++.....+....+.
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~-~~p-----~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALR-MDP-----GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888887777 4788899999999995 466 56778888888875 4578999888876543322211110
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHH
Q 002477 461 ----ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (917)
Q Consensus 461 ----~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~ 536 (917)
...+...+..+...|++++|+..|++++...| .++.++..++.++...|++++|..
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--------------------~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--------------------GSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 14566788888999999999999999998865 477888999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHH-----HHHHHHHHHhCCCChHHHHHHH
Q 002477 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV-----TYLSKFVKRYGKTKLERARELF 611 (917)
Q Consensus 537 ~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~-----~yl~~~~~~~~~~~~e~Ar~lf 611 (917)
.|++++...|.++..+..++.++...++.++|+..++++......+....+-. .++.........|++++|+.++
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988654311111111100 0111111122567899999887
Q ss_pred HHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCC
Q 002477 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGL 691 (917)
Q Consensus 612 e~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~ 691 (917)
+ ..|. +..+++.+|.++.+.|++++|+..|+++++..|++....+..+.+ +...|++++|+..|+++++. .
T Consensus 597 ~----~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~--~~~~g~~~eA~~~l~~ll~~-~ 667 (1157)
T PRK11447 597 R----QQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEV--DIAQGDLAAARAQLAKLPAT-A 667 (1157)
T ss_pred H----hCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHCCCHHHHHHHHHHHhcc-C
Confidence 7 4677 678899999999999999999999999999999977665544444 36789999999999999988 7
Q ss_pred CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 692 PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD-----TEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 692 p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~-----~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
|++. .++..+|.++...|++++|..+|++++.. .|... ..++.....+....|+.+.|...++
T Consensus 668 p~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~-~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 668 NDSL--NTQRRVALAWAALGDTAAAQRTFNRLIPQ-AKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred CCCh--HHHHHHHHHHHhCCCHHHHHHHHHHHhhh-CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7765 56888899999999999999999999987 34322 2567777899999999999999995
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-28 Score=264.26 Aligned_cols=435 Identities=17% Similarity=0.168 Sum_probs=343.8
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHH---HHHH
Q 002477 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI---EFLV 181 (917)
Q Consensus 105 w~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i---~~l~ 181 (917)
.+..+.-+.+.|++..|.+.....-+.+|.+. +++-.+-..| .+.... +....--..+++.+|...+.|- .++.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~-~~llll~ai~-~q~~r~-d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT-ERLLLLSAIF-FQGSRL-DKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcc-cceeeehhhh-hcccch-hhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 44555566677888888888888888888532 2221111111 111122 3333333456677777655543 5677
Q ss_pred hcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q 002477 182 KSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261 (917)
Q Consensus 182 ~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~ 261 (917)
..|++++|...|+.+++.. |+ ..+.|..+|..+..
T Consensus 128 erg~~~~al~~y~~aiel~--------------------------------------------p~-fida~inla~al~~ 162 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK--------------------------------------------PK-FIDAYINLAAALVT 162 (966)
T ss_pred HhchHHHHHHHHHHHHhcC--------------------------------------------ch-hhHHHhhHHHHHHh
Confidence 7777777777776666421 11 13578888888888
Q ss_pred hCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHH
Q 002477 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVK 341 (917)
Q Consensus 262 ~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (917)
.|+.+.|...|-+++.-.|...++
T Consensus 163 ~~~~~~a~~~~~~alqlnP~l~ca-------------------------------------------------------- 186 (966)
T KOG4626|consen 163 QGDLELAVQCFFEALQLNPDLYCA-------------------------------------------------------- 186 (966)
T ss_pred cCCCcccHHHHHHHHhcCcchhhh--------------------------------------------------------
Confidence 888888888888888766543321
Q ss_pred HHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccC
Q 002477 342 KVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAV 419 (917)
Q Consensus 342 ~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~ 419 (917)
....+.+. +|...+|...|.+||.+ +|
T Consensus 187 ----------------------------------------------~s~lgnLlka~Grl~ea~~cYlkAi~~-qp---- 215 (966)
T KOG4626|consen 187 ----------------------------------------------RSDLGNLLKAEGRLEEAKACYLKAIET-QP---- 215 (966)
T ss_pred ----------------------------------------------hcchhHHHHhhcccchhHHHHHHHHhh-CC----
Confidence 11111121 24556788999999976 66
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhh
Q 002477 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (917)
Q Consensus 420 ~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~ 499 (917)
.+.-.|..+|..+-.+|++..|+..|++|++++|... ..|+.++.++...+.+++|+..|.+|+...|
T Consensus 216 -~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~----dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp------- 283 (966)
T KOG4626|consen 216 -CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL----DAYINLGNVYKEARIFDRAVSCYLRALNLRP------- 283 (966)
T ss_pred -ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch----HHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-------
Confidence 5678899999999999999999999999999999998 9999999999999999999999999998866
Q ss_pred hhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
++..++..++-+|..+|.+|-|+..|+|++++.|..|.++.|+|..+...|+..+|...|.+++.+
T Consensus 284 -------------n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 284 -------------NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred -------------cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 356666667777889999999999999999999999999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCCh
Q 002477 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 580 ~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~ 659 (917)
+|+..+..+..+.... .+++++.|..+|+++++..|. ......++|.++.++|++++|+..|+.++++.|.-
T Consensus 350 -~p~hadam~NLgni~~---E~~~~e~A~~ly~~al~v~p~--~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-- 421 (966)
T KOG4626|consen 350 -CPNHADAMNNLGNIYR---EQGKIEEATRLYLKALEVFPE--FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-- 421 (966)
T ss_pred -CCccHHHHHHHHHHHH---HhccchHHHHHHHHHHhhChh--hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH--
Confidence 8999888887654333 467899999999999999999 88899999999999999999999999999999983
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCC
Q 002477 660 LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD 732 (917)
Q Consensus 660 ~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~ 732 (917)
...+......+..+|+.+.|.+.|++||+. .|... +....+|.++...|++..|..-|+.|+++ .|+..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~-nPt~A--eAhsNLasi~kDsGni~~AI~sY~~aLkl-kPDfp 490 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQI-NPTFA--EAHSNLASIYKDSGNIPEAIQSYRTALKL-KPDFP 490 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhc-CcHHH--HHHhhHHHHhhccCCcHHHHHHHHHHHcc-CCCCc
Confidence 333444444456889999999999999999 77554 88999999999999999999999999999 88843
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-28 Score=262.29 Aligned_cols=372 Identities=19% Similarity=0.223 Sum_probs=187.2
Q ss_pred HhhCCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 378 L~~nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
+|++|.-.+.+..++..+. |+...|+..|+.+|. ++| ++.+.|+.+|..+..+|+.+.|-..|..+|..+|.
T Consensus 109 ~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aie-l~p-----~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 109 IRKNPQGAEAYSNLANILKERGQLQDALALYRAAIE-LKP-----KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh-cCc-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 4455555555555555543 344555555555553 244 45555555555555555555555555555555554
Q ss_pred ChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHH
Q 002477 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (917)
Q Consensus 456 ~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~ 535 (917)
.. -+....+.+....|...+|...|.+|+...| .-.-+|..++-+....|++..|+
T Consensus 183 l~----ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp--------------------~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 183 LY----CARSDLGNLLKAEGRLEEAKACYLKAIETQP--------------------CFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred hh----hhhcchhHHHHhhcccchhHHHHHHHHhhCC--------------------ceeeeehhcchHHhhcchHHHHH
Confidence 44 4444455555555555555555555554433 12344555555555555555555
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 002477 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (917)
Q Consensus 536 ~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al 615 (917)
.-|++++.++|+.+.+|+|+|.+|.+.+.|++|+..|++++.+ .|++..++-.. ...++.+|.++-|.+.|++||
T Consensus 239 q~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNl---a~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 239 QHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNL---ACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccce---EEEEeccccHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555554 44443332221 111223445555555555555
Q ss_pred HhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCch
Q 002477 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (917)
Q Consensus 616 ~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~ 695 (917)
+..|. -+..|.++|..+...|...+|...|.+|+..+|++...-.-.+-|. .+++.++.|..+|+++++. .|+-.
T Consensus 314 ~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~--~E~~~~e~A~~ly~~al~v-~p~~a 388 (966)
T KOG4626|consen 314 ELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY--REQGKIEEATRLYLKALEV-FPEFA 388 (966)
T ss_pred hcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH--HHhccchHHHHHHHHHHhh-Chhhh
Confidence 55555 4455555555555555555555555555555555433221111111 3445555555555555555 44333
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhH
Q 002477 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPE 775 (917)
Q Consensus 696 ~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~ 775 (917)
..+..+|.++.+.|++++|...|+.|+.. .|. -.+.+..++..+...|+.+.|..|+...-...++|.+.+..++.
T Consensus 389 --aa~nNLa~i~kqqgnl~~Ai~~YkealrI-~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 389 --AAHNNLASIYKQQGNLDDAIMCYKEALRI-KPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred --hhhhhHHHHHHhcccHHHHHHHHHHHHhc-Cch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 33555555555555555555555555554 443 34444445555555555555555553333333344455544444
Q ss_pred HHHhhhhhhchhHhhhHhhhc
Q 002477 776 YLMQKDQRLSIDDAKDKLKQA 796 (917)
Q Consensus 776 ~~~~~~~~~~~~~a~~~~~~~ 796 (917)
.-.-+ |+..+|.++++++
T Consensus 465 i~kDs---Gni~~AI~sY~~a 482 (966)
T KOG4626|consen 465 IYKDS---GNIPEAIQSYRTA 482 (966)
T ss_pred Hhhcc---CCcHHHHHHHHHH
Confidence 43333 4555555555444
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.6e-23 Score=253.71 Aligned_cols=653 Identities=10% Similarity=-0.005 Sum_probs=414.2
Q ss_pred HhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccc
Q 002477 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (917)
Q Consensus 38 ~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~ 117 (917)
.++.+..+...|++|++..|.+..++........ ..+++++|....++++..+|.+..++...+.+ ++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl--------~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~ 123 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYR--------HFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PV 123 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----cc
Confidence 4578889999999999999999999988888875 67889999999999999999999888876554 77
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHH-----H-HHHcCCChHhHHHHHH-HHHccCCCCH--HHH-HHHHHhcccHH
Q 002477 118 ITKARRTFDRALCALPVTQHDRIWEIYLR-----F-VEQEGIPIETSLRVYR-RYLKYDPSHI--EDF-IEFLVKSKLWQ 187 (917)
Q Consensus 118 ~~~ar~~~~rAL~~~P~~~~~~iw~~y~~-----~-~~~~~~~~~~a~~~~~-r~l~~~P~~~--~~~-i~~l~~~~~~~ 187 (917)
..+|..+|++.+...|.+.....|..++. + +.+. +.|....+ +.+...|... .-. ...+...++|+
T Consensus 124 ~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~----eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 124 EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL----PVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH----HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 88999999999999996555555555541 0 2222 33444333 3334333332 222 45778899999
Q ss_pred HHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhcc-ccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHH
Q 002477 188 EAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTH-ATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFE 266 (917)
Q Consensus 188 ~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e 266 (917)
+|...+.+++.. ++...+.+..+..++.+. .. ..+.++.+..++ +...+|..++++|++.|+.+
T Consensus 200 ~Ai~lL~~L~k~-------~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk----~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 200 QADTLYNEARQQ-------NTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF----TDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc----cCHHHHHHHHHHHHHCCCHH
Confidence 999999999965 233445566666655542 22 123444443222 33679999999999999999
Q ss_pred HHHHHHHHhhhcccchh-chHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhc
Q 002477 267 KARDIFEEGMMTVVTVR-DFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLN 345 (917)
Q Consensus 267 ~A~~~~e~al~~~~~~~-d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 345 (917)
+|..++++.-...++.. .-+.+|..-..--. ...+... -. ..+
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~----~~~~~~~----~~----------------------~~~------ 308 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN----PVQALAN----YT----------------------VQF------ 308 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCc----hhhhccc----hh----------------------hhh------
Confidence 99999988544333311 11222211000000 0000000 00 000
Q ss_pred ccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc-CCchHHHHHHHHHHhccCCCccCCCcHH
Q 002477 346 GFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHT 424 (917)
Q Consensus 346 ~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~-~~~~~a~~~y~~Ai~~i~p~~~~~~~~~ 424 (917)
...-....+..++.++.++....-..++...|.+...-.....+.. +...++........+. .| ....
T Consensus 309 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~-----~~~~ 377 (987)
T PRK09782 309 -----ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EP-----ANLT 377 (987)
T ss_pred -----HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CC-----CCHH
Confidence 0000111122234444444332222234444444432111111111 2333444444444433 22 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCChhHHHhhhh
Q 002477 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN---FKGALELMRRATAEPSVEVRRRVAA 501 (917)
Q Consensus 425 lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~---~~~A~~~l~~al~~~~~~~~~~~~~ 501 (917)
.-...+-....+|+.++|+.+|+.+...++...- --.+...++.++.+++. ..++..+...+-. +. +...
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~ 450 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL-SQTLMARLASLLESHPYLATPAKVAILSKPLPL-AE-----QRQW 450 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc-CHHHHHHHHHHHHhCCcccchHHHHHhcccccc-ch-----hHHH
Confidence 4455555566777777777777777764221110 01344466666666655 3333333110000 00 0000
Q ss_pred cCC----ch----hhh---hhhc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHH
Q 002477 502 DGN----EP----VQM---KLHK--SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDA 568 (917)
Q Consensus 502 ~~~----~~----~~~---~~~~--~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A 568 (917)
.|. .+ ... ..|. ...+|..++.++.. |..++|...|.+++...|.+. ..+.+|..+...|++++|
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence 000 00 011 1234 77899999988877 788889999999999988654 366667777889999999
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 569 FRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 569 ~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
...|++++.. .|.. ..|..++..+. ..|+++.|...|.++++..|. ...++..++......|++++|+..|+
T Consensus 529 i~~~rka~~~--~p~~-~a~~~la~all---~~Gd~~eA~~~l~qAL~l~P~--~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 529 LAAWQKISLH--DMSN-EDLLAAANTAQ---AAGNGAARDRWLQQAEQRGLG--DNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HHHHHHHhcc--CCCc-HHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999998774 3443 33544443333 457899999999999999887 55555555555556699999999999
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 002477 649 QATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFAD 728 (917)
Q Consensus 649 ~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~ 728 (917)
++++..|+ ... +........+.|++++|...|+++++. .|++. .++..+|.++...|+.++|+.+|+++++. +
T Consensus 601 ~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~--~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~ 673 (987)
T PRK09782 601 RSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALEL-EPNNS--NYQAALGYALWDSGDIAQSREMLERAHKG-L 673 (987)
T ss_pred HHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 99999995 433 333444446789999999999999999 88877 67889999999999999999999999988 8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhHHHHhhhhhhchhHhhhHhhhc
Q 002477 729 PRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQA 796 (917)
Q Consensus 729 P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 796 (917)
|+ ++.+|..+.......|+.+.|...++..-.+.+...++.+..+++..+. .++.+|.+.+.++
T Consensus 674 P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~---~~~~~a~~~~~r~ 737 (987)
T PRK09782 674 PD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR---FNFRRLHEEVGRR 737 (987)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH---HHHHHHHHHHHHH
Confidence 87 8889999999999999999999999655555555567777777776554 4455555555444
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.6e-24 Score=242.54 Aligned_cols=619 Identities=15% Similarity=0.128 Sum_probs=449.4
Q ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHH
Q 002477 41 PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120 (917)
Q Consensus 41 ~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ 120 (917)
.+..+..+|..|.+..-.....|..-..++... ....++.|-..|...|...|++.-..+.-+.+.+..+++..
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~------~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~ 182 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLE------GDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRG 182 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhc------CCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHH
Confidence 567788899999999988777777666665311 12227899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCC-chHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHHHH---HH---hcccHHHHHHHH
Q 002477 121 ARRTFDRALCALPVTQ-HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEF---LV---KSKLWQEAAERL 193 (917)
Q Consensus 121 ar~~~~rAL~~~P~~~-~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i~~---l~---~~~~~~~A~~~l 193 (917)
|...|.++|+.+|... .++|-..|+-+ ..+.+ +.|+..|.|+|+++|.+...++.. .. ....+..+...+
T Consensus 183 al~yyk~al~inp~~~aD~rIgig~Cf~--kl~~~-~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 183 ALKYYKKALRINPACKADVRIGIGHCFW--KLGMS-EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLL 259 (1018)
T ss_pred HHHHHHHHHhcCcccCCCccchhhhHHH--hccch-hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999999999999543 23333333322 34666 899999999999999987777642 12 234466677777
Q ss_pred HHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccc--hhhHHHHHHHHHHHHhCcHHHHHHH
Q 002477 194 ASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD--EVGRLWTSLADYYIRRELFEKARDI 271 (917)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~lw~~la~~y~~~g~~e~A~~~ 271 (917)
.++.... ..+..+...+...+--.++- ..+..+...++..... -..+-++.+|+.|..+|+|++|-..
T Consensus 260 ~~ay~~n-------~~nP~~l~~LAn~fyfK~dy---~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 260 QRAYKEN-------NENPVALNHLANHFYFKKDY---ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHhhc-------CCCcHHHHHHHHHHhhcccH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 7666431 11111222222211111110 0133333333322100 0134578899999999999999999
Q ss_pred HHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCc
Q 002477 272 FEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHD 351 (917)
Q Consensus 272 ~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 351 (917)
|.+++...+...-+..+-..-.+ -.
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~-------------------------------------------------------i~ 354 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMY-------------------------------------------------------IK 354 (1018)
T ss_pred HHHHHccCCCCccccccchhHHH-------------------------------------------------------HH
Confidence 99999987665211110000000 11
Q ss_pred cchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCC------chHHHHHHHHHHhccCCCccCCCcHHH
Q 002477 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGN------PTKQILTYTEAVRTVDPMKAVGKPHTL 425 (917)
Q Consensus 352 ~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~------~~~a~~~y~~Ai~~i~p~~~~~~~~~l 425 (917)
.+++......||+ ++.++|++......++.+|... .++|..+..+++.. .| .....
T Consensus 355 ~~dle~s~~~fEk------------v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~-----~d~~a 416 (1018)
T KOG2002|consen 355 RGDLEESKFCFEK------------VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TP-----VDSEA 416 (1018)
T ss_pred hchHHHHHHHHHH------------HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-cc-----ccHHH
Confidence 2235555567776 6778999999999999998654 36788888888865 34 57899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CChhHHHhh
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQ-----VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRV 499 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~-----~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~-~~~~~~~~~ 499 (917)
|+.+|.+++...-... ...|.+|+. ..+--+ .+....|.+....|++..|...|.+|... .+ ..
T Consensus 417 ~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~----E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~-----~~ 486 (1018)
T KOG2002|consen 417 WLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP----EVLNNVASLHFRLGNIEKALEHFKSALGKLLE-----VA 486 (1018)
T ss_pred HHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH----HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh-----hc
Confidence 9999999987655444 777777773 112223 78888999999999999999999999865 11 00
Q ss_pred hhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
..+... -.+..+-+..+.+++..++++.|...|..++..+|.....++.++.+....+...+|...+..++..
T Consensus 487 n~de~~------~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~- 559 (1018)
T KOG2002|consen 487 NKDEGK------STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI- 559 (1018)
T ss_pred Cccccc------cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-
Confidence 000000 0124456788999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHH------------hCCHHHHHHHH
Q 002477 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED------------YGLAKRAMKVY 647 (917)
Q Consensus 580 ~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~------------~g~~~~A~~~y 647 (917)
+..++++|..++.... +..+.-.|..-|+..++......+.-..+.+|.++.+ .+..++|+++|
T Consensus 560 -d~~np~arsl~G~~~l---~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 560 -DSSNPNARSLLGNLHL---KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred -ccCCcHHHHHHHHHHH---hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 7777888987765554 3445677777777777654333345566777776653 45678899999
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 002477 648 DQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727 (917)
Q Consensus 648 ~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~ 727 (917)
.++++.+|. .+|..++.....+..|.+..|+.||.+..+. ..+ ..++|+++|..+..+|++-.|...|+.|++..
T Consensus 636 ~kvL~~dpk--N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~~~--~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 636 GKVLRNDPK--NMYAANGIGIVLAEKGRFSEARDIFSQVREA-TSD--FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHhcCcc--hhhhccchhhhhhhccCchHHHHHHHHHHHH-Hhh--CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 5566666655557889999999999999987 432 23779999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhHHH
Q 002477 728 DPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYL 777 (917)
Q Consensus 728 ~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~~~ 777 (917)
.+..+..+...+.....+.|....+++.+...+.+.+.-+.+-|..+-.+
T Consensus 711 ~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 711 YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 88878899999999999999999999999888888887666666666553
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=4.4e-22 Score=242.92 Aligned_cols=621 Identities=13% Similarity=0.037 Sum_probs=420.1
Q ss_pred chHHHHHHhhCCCChHHHHHHHHH-HHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 002477 13 DLLYEEELLRNPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTF 91 (917)
Q Consensus 13 ~~~~E~~l~~~P~~~~~W~~yi~~-~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~ 91 (917)
-..|+.++..+|.+...+....+. ...+..+.+....+++++..|.+..++...... +++.++..+|
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------------~~~~kA~~~y 131 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------------PVEVKSVTTV 131 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------------ccChhHHHHH
Confidence 356899999999999999888884 457788889999999999999877776654222 4678999999
Q ss_pred HHHHHhcCCChHHHHHHHHHH-----hhcccHHHHHHHHHHHHHhCCCCCchHHHHHH-HHHHHHcCCChHhHHHHHHHH
Q 002477 92 ERALVTMHKMPRIWIMYLETL-----TSQKFITKARRTFDRALCALPVTQHDRIWEIY-LRFVEQEGIPIETSLRVYRRY 165 (917)
Q Consensus 92 eraL~~~p~~~~lw~~y~~~~-----~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y-~~~~~~~~~~~~~a~~~~~r~ 165 (917)
++.+...|.++++....+..+ +.......+..+++ ++..+..-|+.+-.++ .+++...++. +.+...+++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw-~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQW-SQADTLYNEA 208 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCH-HHHHHHHHHH
Confidence 999999999999988877762 22234467777776 5555542244444444 7888888887 8899999999
Q ss_pred HccCCCCHHHHH---HHHHh-cccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhh
Q 002477 166 LKYDPSHIEDFI---EFLVK-SKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGI 241 (917)
Q Consensus 166 l~~~P~~~~~~i---~~l~~-~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i 241 (917)
++..|.+..... ..+.. .++ +++..++.+.+ +....+|..+++.+.+.++.. .+..++++.-
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----------k~d~~l~~ala~~yi~~G~~~---~A~~~L~~~~ 274 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----------FTDPQSRITYATALAYRGEKA---RLQHYLIENK 274 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----------ccCHHHHHHHHHHHHHCCCHH---HHHHHHHhCc
Confidence 999998865443 23333 345 55555543322 245678888888887666533 3555665543
Q ss_pred hcc---cchhhHHHHH-HHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 002477 242 RKF---TDEVGRLWTS-LADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDD 317 (917)
Q Consensus 242 ~~~---~~~~~~lw~~-la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~ 317 (917)
..+ |++ ..|.- ++++... ...|+.-|.+-+....-.+-+ ...+-+.+ +..-.+. +++.
T Consensus 275 ~~~~~~~~~--~~~~~~l~r~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~--------- 336 (987)
T PRK09782 275 PLFTTDAQE--KSWLYLLSKYSAN---PVQALANYTVQFADNRQYVVG-ATLPVLLK--EGQYDAA-QKLL--------- 336 (987)
T ss_pred ccccCCCcc--HHHHHHHHhccCc---hhhhccchhhhhHHHHHHHHH-HHHHHHHh--ccHHHHH-HHHh---------
Confidence 333 333 23332 2222111 011222222211100000000 00000000 0000000 0000
Q ss_pred cccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhch--hh--hhhhHHhhCCCCHHHHHHHHH
Q 002477 318 EEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRP--EL--ANSVLLRQNPHNVEQWHRRVK 393 (917)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~--~~--~~~~~L~~nP~~~~~w~~~~~ 393 (917)
.+.... .. ...++..++...+ +. .-..+.+.+|.+........-
T Consensus 337 ----------------------------~~~~~~---~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 337 ----------------------------ATLPAN---EM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred ----------------------------cCCCcc---hH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 000000 00 1122222221111 11 112255667877766554433
Q ss_pred --HHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCC-------------------------H---HHHH
Q 002477 394 --IFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD-------------------------I---ANAR 443 (917)
Q Consensus 394 --l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~-------------------------~---~~A~ 443 (917)
+..|+..+|...|.++... .+ .... +..+-..++..|.+++. + ..+.
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~-~~-~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPF-QG-DARL-SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCC-Cc-cccc-CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 3467888999999998864 22 1111 45666688888887654 2 2234
Q ss_pred HHHHHHHhccCC--ChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHH
Q 002477 444 VIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (917)
Q Consensus 444 ~i~e~al~~~~~--~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 521 (917)
..+.+++...|. ++ .+|..++.++.. +++.+|+..|.+++...| ........
T Consensus 462 ~~~~~al~~~p~~~~~----~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P---------------------d~~~~L~l 515 (987)
T PRK09782 462 PAIVRLLGDMSPSYDA----AAWNRLAKCYRD-TLPGVALYAWLQAEQRQP---------------------DAWQHRAV 515 (987)
T ss_pred HHHHHhcccCCCCCCH----HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC---------------------chHHHHHH
Confidence 444555555555 55 899999999887 789999999999987755 12234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCC
Q 002477 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (917)
Q Consensus 522 ~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~ 601 (917)
+..+...|+++.|...|++++...|. +..++++|.++...|++++|...|++++.. .|....++.... ......
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La---~~l~~~ 589 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLH---AQRYIP 589 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHH---HHHHhC
Confidence 66667899999999999999877554 556889999999999999999999999997 677755444322 211245
Q ss_pred CChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHH
Q 002477 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681 (917)
Q Consensus 602 ~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~ 681 (917)
|++++|...|+++++..|+ ..+|..+|.++.+.|++++|+..|++++...|++.......+++. ...|++++|+.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL--~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL--WDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHCCCHHHHHH
Confidence 7899999999999999995 678999999999999999999999999999999876555444443 57899999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 682 IYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 682 ~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
.|+++++. .|++. .++..+|.++...|+++.|...|+++++. +|+ ...+-..+.+++.+..+.+++.+-++
T Consensus 665 ~l~~AL~l-~P~~~--~a~~nLA~al~~lGd~~eA~~~l~~Al~l-~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 665 MLERAHKG-LPDDP--ALIRQLAYVNQRLDDMAATQHYARLVIDD-IDN-QALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHh-CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC-CchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999 89876 78999999999999999999999999998 898 77888888888888888888888774
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=5.6e-23 Score=246.58 Aligned_cols=263 Identities=15% Similarity=0.159 Sum_probs=223.9
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccH
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (917)
.+.++.|...|++++...... ...+..|..++.++...|++++|+..|++++...| ...
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--------------------~~~ 365 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--------------------RVT 365 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------CcH
Confidence 478999999999999865222 22338899999999999999999999999998866 467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~ 595 (917)
..|..++.++...|++++|...|+++++.+|.++.+|..+|.++...|++++|+..|++++.+ +|.+...|...+..+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999997 888877777554333
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHH-----HHHHHHHHH
Q 002477 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG-----MYEIYIARA 670 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~-----l~~~~i~~~ 670 (917)
. ..|++++|...|++++...|. +..++..+|.++...|++++|+..|+++++..|.....+ ++...+...
T Consensus 444 ~---~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 Y---KEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred H---HCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 3 567899999999999999998 788999999999999999999999999999998754322 111122222
Q ss_pred HHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 671 AEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 671 ~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
...+++++|..+|+++++. .|++. ..+..+|.++...|++++|...|+++++. .+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l-~p~~~--~a~~~la~~~~~~g~~~eAi~~~e~A~~l-~~~ 574 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII-DPECD--IAVATMAQLLLQQGDVDEALKLFERAAEL-ART 574 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc-CCCcH--HHHHHHHHHHHHccCHHHHHHHHHHHHHH-hcc
Confidence 3458999999999999999 88776 46888999999999999999999999988 443
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.6e-22 Score=227.23 Aligned_cols=630 Identities=14% Similarity=0.112 Sum_probs=419.0
Q ss_pred hHHHHHHhhCCCChHHHHHHHH-HHH--hCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 002477 14 LLYEEELLRNPFSLKLWWRYLV-AKR--EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNT 90 (917)
Q Consensus 14 ~~~E~~l~~~P~~~~~W~~yi~-~~~--~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~ 90 (917)
+.|..+-..+-+....|+---- .+. ....+.+...|-..++..|.+.-....-+.+. ...++|..+..+
T Consensus 115 ~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~--------ynkkdY~~al~y 186 (1018)
T KOG2002|consen 115 LLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIA--------YNKKDYRGALKY 186 (1018)
T ss_pred HHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHH--------hccccHHHHHHH
Confidence 4455555555555444432211 111 22257778888999999999887777666665 367789999999
Q ss_pred HHHHHHhcCCC---hHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCC--hHhHHHHHHHH
Q 002477 91 FERALVTMHKM---PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP--IETSLRVYRRY 165 (917)
Q Consensus 91 ~eraL~~~p~~---~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~--~~~a~~~~~r~ 165 (917)
|.++|..+|.+ |+|-+.|| +.+.+..+.|+..|.|||+.+| +.......+..+.....+. ...+...+.++
T Consensus 187 yk~al~inp~~~aD~rIgig~C--f~kl~~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRIGIGHC--FWKLGMSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHhcCcccCCCccchhhhH--HHhccchhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 99999988743 34444433 3456788889999999999999 5666655555554443322 25788889999
Q ss_pred HccCCCCHHH---HHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhh
Q 002477 166 LKYDPSHIED---FIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR 242 (917)
Q Consensus 166 l~~~P~~~~~---~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 242 (917)
...+|.++.. +..++...|+|..+..+...++......+.. -.-+-.+.......++. ..+-..+-.+++
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~----aes~Y~~gRs~Ha~Gd~---ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK----AESFYQLGRSYHAQGDF---EKAFKYYMESLK 335 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHhhccH---HHHHHHHHHHHc
Confidence 9988888543 4467888999999999888877432111111 11122222333222221 123445556666
Q ss_pred cccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhch-HHHHHHHHHHHHHHHHHHhcCCCCCccccccccccC
Q 002477 243 KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDF-SVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHG 321 (917)
Q Consensus 243 ~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~-~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~ 321 (917)
.-+++..-....|++.|+.+|+++.+..+|++.+...|+.... ..+-..|+..... .
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~--------------~-------- 393 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKK--------------Q-------- 393 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhh--------------h--------
Confidence 6677655567899999999999999999999999998876432 2233333322100 0
Q ss_pred CcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc-CCch
Q 002477 322 SAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-GNPT 400 (917)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~-~~~~ 400 (917)
...+.+...+.+ .+++.|.+...|+.++.+++ +++-
T Consensus 394 -------------------------------~~~d~a~~~l~K------------~~~~~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 394 -------------------------------EKRDKASNVLGK------------VLEQTPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred -------------------------------HHHHHHHHHHHH------------HHhcccccHHHHHHHHHHHHhcChH
Confidence 002222222222 45667889999999999886 4666
Q ss_pred HHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cC-CChhh----hHHHHHHHHHHHHhc
Q 002477 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-NY-KTVDH----LASIWCEWAEMELRH 474 (917)
Q Consensus 401 ~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~-~~-~~~~~----l~~~w~~~a~~e~~~ 474 (917)
..+..|..|+..+-.. ...-++.+....|..+...|++..|...|..|+.. .+ .+++. ...+-+.+|.+....
T Consensus 431 ~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 6677888887442111 01124577788888888899999999999888875 11 11111 124567788888888
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHhhh------hcCCchh--------hhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 475 KNFKGALELMRRATAEPSVEVRRRVA------ADGNEPV--------QMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~~~~~~~~~~~------~~~~~~~--------~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~ 540 (917)
++++.|...|..++...|.-+.-+.. ..++.+. -.....++.+|.++++++.+....-.|.+-|+.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 88899999998888776533321111 1122211 122346889999999999999888888888888
Q ss_pred HHhccC--CCHHHHHHHHHHHHH------------ccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHH
Q 002477 541 ILDLRI--ATPQIIINYALLLEE------------HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (917)
Q Consensus 541 al~~~p--~~~~~~~~~a~~~~~------------~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~ 606 (917)
++..-. .++-..+.+|+++.+ .+..++|+++|.+++.. +|.+.-.-+..+..+. ..|.+..
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA---~kg~~~~ 664 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLA---EKGRFSE 664 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhh---hccCchH
Confidence 877532 345667778887653 24578888888888885 7876322232222222 3468999
Q ss_pred HHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 002477 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQA 686 (917)
Q Consensus 607 Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~a 686 (917)
|+++|.|+.+.... +..+|+++|+++..+|.+..|+++|+.+++..-.+....+...........+++.+|......|
T Consensus 665 A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 665 ARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999887654 5679999999999999999999999999998876556655544444445678899999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHH-------------------HcCChhHHHHHHHHHHccCCCCCCHHHHHH
Q 002477 687 IESGLPDKDVKAMCLKYAELEK-------------------SLGEIDRARGIYVFASQFADPRSDTEFWNR 738 (917)
Q Consensus 687 l~~~~p~~~~~~~~l~~a~le~-------------------~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~ 738 (917)
+.. .|.+.+ +-+++|-+.. ..++.+.|+.+|.+.....+++.+...-..
T Consensus 743 ~~~-~p~~~~--v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~~~~~ 810 (1018)
T KOG2002|consen 743 RHL-APSNTS--VKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRISKTVIAQ 810 (1018)
T ss_pred HHh-CCccch--HHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 999 887763 3444444332 334578999999999988766555544443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=3e-22 Score=240.30 Aligned_cols=425 Identities=15% Similarity=0.128 Sum_probs=290.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~ 159 (917)
..++|+.|...|++++...|+ +.+|...+..+...++++.|...+++||...| .+..+|...+......|.+ +.|+
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~~lg~~-~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYDGLGKY-ADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCH-HHHH
Confidence 567788888888888888885 77888888888888888888888888888888 5678888888888888877 7888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHh
Q 002477 160 RVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRG 239 (917)
Q Consensus 160 ~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (917)
..|..++..++.+... +..+........+...+..++.... .....|..+..++........ . ..+..
T Consensus 215 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ 282 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-------ENLPSVTFVGNYLQSFRPKPR---P-AGLED 282 (615)
T ss_pred HHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHccCCcc---h-hhhhc
Confidence 8887777665544221 1111111011122233333332210 000011111111110000000 0 00000
Q ss_pred hhhcccchhhHHHHHHHHHH---HHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 002477 240 GIRKFTDEVGRLWTSLADYY---IRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEED 316 (917)
Q Consensus 240 ~i~~~~~~~~~lw~~la~~y---~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~ 316 (917)
.....+. .+..+..++..+ ...+.|++|...|++++...
T Consensus 283 ~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------------------------------------- 324 (615)
T TIGR00990 283 SNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------------------------------------- 324 (615)
T ss_pred ccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-------------------------------------
Confidence 0000000 011111111111 11234444444444443311
Q ss_pred ccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHH-
Q 002477 317 DEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF- 395 (917)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~- 395 (917)
...|.....|..++.++
T Consensus 325 --------------------------------------------------------------~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 325 --------------------------------------------------------------KLGEKEAIALNLRGTFKC 342 (615)
T ss_pred --------------------------------------------------------------CCChhhHHHHHHHHHHHH
Confidence 01244444555555544
Q ss_pred -cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhc
Q 002477 396 -EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (917)
Q Consensus 396 -~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~ 474 (917)
.+++++|+..|++++. ++| .....|+.+|.++...|++++|...|++++..+|.++ .+|..++.++...
T Consensus 343 ~~g~~~eA~~~~~kal~-l~P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~ 412 (615)
T TIGR00990 343 LKGKHLEALADLSKSIE-LDP-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP----DIYYHRAQLHFIK 412 (615)
T ss_pred HcCCHHHHHHHHHHHHH-cCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc
Confidence 5788899999999985 466 5778899999999999999999999999999999888 9999999999999
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHH
Q 002477 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~ 554 (917)
|++++|+..|++++...| .+...|..++.++...|++++|...|++++...|.++.++..
T Consensus 413 g~~~~A~~~~~kal~l~P--------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 472 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDP--------------------DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY 472 (615)
T ss_pred CCHHHHHHHHHHHHHcCc--------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999998865 467788889999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhccCCCChHHH-------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHH
Q 002477 555 YALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI-------WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627 (917)
Q Consensus 555 ~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~l-------w~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~ 627 (917)
+|.++...|++++|+..|++++.+ .|..... +...+ .+.. ..+++++|..+|++++...|. +...+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~-~~~~--~~~~~~eA~~~~~kAl~l~p~--~~~a~ 545 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKAL-ALFQ--WKQDFIEAENLCEKALIIDPE--CDIAV 545 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHH-HHHH--HhhhHHHHHHHHHHHHhcCCC--cHHHH
Confidence 999999999999999999999997 5543221 11111 1111 246799999999999999988 67788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 628 ~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
..+|.++.+.|++++|+..|+++++..+..
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999987763
No 19
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=1.5e-20 Score=234.34 Aligned_cols=321 Identities=12% Similarity=0.063 Sum_probs=154.7
Q ss_pred HHHHHHHHHHc--CCchHHHHHHHHHHhc-cCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-ChhhhH
Q 002477 386 EQWHRRVKIFE--GNPTKQILTYTEAVRT-VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK-TVDHLA 461 (917)
Q Consensus 386 ~~w~~~~~l~~--~~~~~a~~~y~~Ai~~-i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~-~~~~l~ 461 (917)
..|...+..+. +++++|+.+|.+.... +.| +...+..+...+.+.|+++.|..+++.+.+.... ++
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P------d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~---- 424 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSP------DEITIASVLSACACLGDLDVGVKLHELAERKGLISYV---- 424 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch----
Confidence 34544444442 3445555555554432 122 2233444444555555555566555555554322 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
.++..++.++.+.|++++|+++|++.... +...|..++..+...|..++|..+|+++
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----------------------d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEK-----------------------DVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCC-----------------------CeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45555555555555566665555554321 2345555555555555555555555555
Q ss_pred HhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC
Q 002477 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (917)
Q Consensus 542 l~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~ 621 (917)
+...+-+...+..+...+.+.|..+.+.+++..+++.- ...+..+.+..+..+. +.|+++.|..+|+.+ +.
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g-~~~~~~~~naLi~~y~---k~G~~~~A~~~f~~~----~~- 552 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG-IGFDGFLPNALLDLYV---RCGRMNYAWNQFNSH----EK- 552 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC-CCccceechHHHHHHH---HcCCHHHHHHHHHhc----CC-
Confidence 54322333444444455555555555555555555531 1112222333333222 334555555555554 12
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh-CCCCchHHHHH
Q 002477 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES-GLPDKDVKAMC 700 (917)
Q Consensus 622 ~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~-~~p~~~~~~~~ 700 (917)
+...|..+...+.+.|+.++|+.+|+++.+.... |....|...+......|.++++..+|+.+.+. +...+. ..+
T Consensus 553 -d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~-Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~--~~y 628 (857)
T PLN03077 553 -DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL--KHY 628 (857)
T ss_pred -ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch--HHH
Confidence 3445555555555555555555555555543211 11222333333334455555555555555532 111111 334
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 701 LKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (917)
Q Consensus 701 l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~l 756 (917)
..+..++.+.|++++|..+++..- . .| +..+|..+......||+.+.++.+.
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~-~-~p--d~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP-I-TP--DPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC-C-CC--CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 445555555555555555555541 1 23 3455555555555555555554444
No 20
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=1.8e-20 Score=233.85 Aligned_cols=589 Identities=12% Similarity=0.069 Sum_probs=420.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHh-cCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCC
Q 002477 57 PGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT-MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVT 135 (917)
Q Consensus 57 P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~-~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~ 135 (917)
|.+...+...+.... ..+.++.|..+|+..... .+.+...|...+..+...+.+..++.++.++++..+.
T Consensus 48 ~~~~~~~n~~i~~l~--------~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 118 (857)
T PLN03077 48 SSSTHDSNSQLRALC--------SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS- 118 (857)
T ss_pred ccchhhHHHHHHHHH--------hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-
Confidence 445666666665553 567889999999998874 3456677888888888889999999999999998874
Q ss_pred CchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHH
Q 002477 136 QHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWL 215 (917)
Q Consensus 136 ~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~ 215 (917)
.+..++...+..+.+.|.. ..|.++|++....+...+..++..+.+.|++++|..+|.++.... -..+...+.
T Consensus 119 ~~~~~~n~li~~~~~~g~~-~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g------~~Pd~~t~~ 191 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGEL-VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG------VRPDVYTFP 191 (857)
T ss_pred CCchHHHHHHHHHHhCCCh-HHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCChhHHH
Confidence 3567788888888888887 999999999876555568999999999999999999999998531 112222344
Q ss_pred HHHHHHhccccccccccHH-HHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHH
Q 002477 216 ELCDLLTTHATEISGLNVD-AIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQ 294 (917)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~ 294 (917)
.++..+...+....+..+. .+++.++. |+ ..++..|...|.+.|+++.|+.+|+++.. ++...|..+..+|.+
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~--~~--~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~ 265 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFE--LD--VDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFE 265 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCC--cc--cchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHh
Confidence 4545444333211111111 22333332 22 35788999999999999999999999865 455667777777763
Q ss_pred H---HHHHHH-HHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhch
Q 002477 295 F---EEIMVS-AKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRP 370 (917)
Q Consensus 295 f---e~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~ 370 (917)
- ++++.- ..|...+.. .+. ..|..+... +- ..++++.....+..
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~-Pd~---------------~ty~~ll~a--------~~--~~g~~~~a~~l~~~------ 313 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVD-PDL---------------MTITSVISA--------CE--LLGDERLGREMHGY------ 313 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCC-CCh---------------hHHHHHHHH--------HH--hcCChHHHHHHHHH------
Confidence 2 222100 011111100 000 000000000 00 01112222111111
Q ss_pred hhhhhhHHhhCCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002477 371 ELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDK 448 (917)
Q Consensus 371 ~~~~~~~L~~nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~ 448 (917)
+.-...+.++..+...+..|. ++.++|..+|.+.. .| +...|..+...|.+.|++++|..+|++
T Consensus 314 -----~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~------d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 314 -----VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TK------DAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred -----HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CC------CeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111224456777888888774 67889999998753 12 456899999999999999999999998
Q ss_pred HHhcc--CCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHH
Q 002477 449 AVQVN--YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526 (917)
Q Consensus 449 al~~~--~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~ 526 (917)
+.+.. |+. ..+......+.+.|+++.|.++++.++.... ..+..++..+++.+.
T Consensus 380 M~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-------------------~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 380 MEQDNVSPDE-----ITIASVLSACACLGDLDVGVKLHELAERKGL-------------------ISYVVVANALIEMYS 435 (857)
T ss_pred HHHhCCCCCc-----eeHHHHHHHHhccchHHHHHHHHHHHHHhCC-------------------CcchHHHHHHHHHHH
Confidence 86643 433 4555566677889999999999999986521 136788999999999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHH
Q 002477 527 SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (917)
Q Consensus 527 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~ 606 (917)
+.|++++|..+|+++.+ .+...|..+...+..+|+.++|+.+|++.+..+ .|+... +...+..+. ..+.++.
T Consensus 436 k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~-~pd~~t-~~~lL~a~~---~~g~l~~ 507 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL-KPNSVT-LIAALSACA---RIGALMC 507 (857)
T ss_pred HcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC-CCCHhH-HHHHHHHHh---hhchHHH
Confidence 99999999999999865 355689999999999999999999999998752 465543 444444333 4578999
Q ss_pred HHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 002477 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQA 686 (917)
Q Consensus 607 Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~a 686 (917)
++.++..+++..... +..++..+..++.+.|+.++|..+|+.. . +....|+..|..+...|..++|..+|+++
T Consensus 508 ~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~---~---~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 508 GKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH---E---KDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc---C---CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999864332 4567788899999999999999999986 2 34567889998888999999999999999
Q ss_pred HHhCC-CCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 687 IESGL-PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF--ADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 687 l~~~~-p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~--~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
++.|. |+.. .+..+...+.+.|.+++|..+|+.+.+. ..| +...|..+++...+.|..++|.++++
T Consensus 581 ~~~g~~Pd~~---T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 581 VESGVNPDEV---TFISLLCACSRSGMVTQGLEYFHSMEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHcCCCCCcc---cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 98644 4443 3555566788899999999999999843 245 56899999999999999999999985
No 21
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.93 E-value=1.6e-21 Score=208.70 Aligned_cols=450 Identities=20% Similarity=0.360 Sum_probs=316.2
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 002477 17 EEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALV 96 (917)
Q Consensus 17 E~~l~~~P~~~~~W~~yi~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~ 96 (917)
++.|+.||+|+.+|...|+..+..+..+++..||+.+..||.+...|..|+.-+. ...+|+.+..+|.|||+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El--------~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIEREL--------ASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHH--------HhhhHHHHHHHHHHHHH
Confidence 8899999999999999999988889999999999999999999999999999985 66789999999999998
Q ss_pred hcCCChHHHHHHHHHHhhcc-cH----HHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHcC---CC-----hHhHHHHH
Q 002477 97 TMHKMPRIWIMYLETLTSQK-FI----TKARRTFDRALCALPVT-QHDRIWEIYLRFVEQEG---IP-----IETSLRVY 162 (917)
Q Consensus 97 ~~p~~~~lw~~y~~~~~~~~-~~----~~ar~~~~rAL~~~P~~-~~~~iw~~y~~~~~~~~---~~-----~~~a~~~~ 162 (917)
.-- +.++|..|+.+..+.+ .. ......|+-++..+..+ ++..||..|+.|..... .. ++..+++|
T Consensus 82 kvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriY 160 (656)
T KOG1914|consen 82 KVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIY 160 (656)
T ss_pred HHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 653 5999999999987644 22 34567788899888833 67899999999976321 11 23455666
Q ss_pred HHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhh
Q 002477 163 RRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR 242 (917)
Q Consensus 163 ~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 242 (917)
+|+|.. |-+ +-.++|.+|+.+...-. .+.+++++.
T Consensus 161 qral~t-Pm~------------------------------------nlEkLW~DY~~fE~~IN----~~tarK~i~---- 195 (656)
T KOG1914|consen 161 QRALVT-PMH------------------------------------NLEKLWKDYEAFEQEIN----IITARKFIG---- 195 (656)
T ss_pred HHHhcC-ccc------------------------------------cHHHHHHHHHHHHHHHH----HHHHHHHHH----
Confidence 666653 322 12347888888765221 112222221
Q ss_pred cccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccch--hchHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 002477 243 KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV--RDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (917)
Q Consensus 243 ~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~--~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~ 320 (917)
-+...|..||.++++...-...- .+++ .
T Consensus 196 -----------------e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-----------------------v---------- 225 (656)
T KOG1914|consen 196 -----------------ERSPEYMNARRVYQELQNLTRGLNRNAPA-----------------------V---------- 225 (656)
T ss_pred -----------------hhCHHHHHHHHHHHHHHHHHhhhcccCCC-----------------------C----------
Confidence 13345667777777654421110 0000 0
Q ss_pred CCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCc-
Q 002477 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNP- 399 (917)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~- 399 (917)
+....-+. -..++.|..++++...++
T Consensus 226 -----------------------------p~~~T~~e------------------------~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 226 -----------------------------PPKGTKDE------------------------IQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred -----------------------------CCCCChHH------------------------HHHHHHHHHHHHHHhcCCc
Confidence 00000000 001445666666665432
Q ss_pred ---------hHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhccCCC
Q 002477 400 ---------TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD--------------IANARVIFDKAVQVNYKT 456 (917)
Q Consensus 400 ---------~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~--------------~~~A~~i~e~al~~~~~~ 456 (917)
..+.-+|++++..+ +-.+.+|+.++.+....++ -++|..+|++++..--.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l------~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~- 325 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYL------GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK- 325 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-
Confidence 13445688887653 3467889988888877776 67888889888764321
Q ss_pred hhhhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHH
Q 002477 457 VDHLASIWCEWAEMELRHKN---FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (917)
Q Consensus 457 ~~~l~~~w~~~a~~e~~~~~---~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~ 533 (917)
....++..++..+....+ .+..-..+++++..... +-.-+|..|.++..+..-+..
T Consensus 326 --~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-------------------~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 326 --ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-------------------DLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred --HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc-------------------CCceehhHHHHHHHHhhhHHH
Confidence 123777788877765544 77777888888765430 123578888888888777889
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 002477 534 TRAVYERILDLRIATPQIIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFE 612 (917)
Q Consensus 534 A~~~y~~al~~~p~~~~~~~~~a~~~~-~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe 612 (917)
||.+|.++-+..-....+++.-|.++. ..++.+-|+++|+-|++. ++++...-..|++.+. ..++-..||.+|+
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~---~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLS---HLNDDNNARALFE 459 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHH---HhCcchhHHHHHH
Confidence 999999988865444477777776664 468899999999999995 6777777777877555 3456788999999
Q ss_pred HHHHh-CCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 613 NAVET-APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 613 ~al~~-~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
+++.. .|.+.++.+|-.+..+|...|+...++++=+|-....|.
T Consensus 460 r~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 460 RVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 99987 455457889999999999999999999998888887773
No 22
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.91 E-value=1.5e-20 Score=201.41 Aligned_cols=467 Identities=18% Similarity=0.283 Sum_probs=305.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHH
Q 002477 50 ERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129 (917)
Q Consensus 50 eral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL 129 (917)
++-++.+|.+...|...++... ...+++++.+||+.+..+|.+|+.|..|++-++..++++....+|.|||
T Consensus 10 ~~rie~nP~di~sw~~lire~q---------t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ---------TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc---------cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6778999999999999999873 3378999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCC
Q 002477 130 CALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKT 209 (917)
Q Consensus 130 ~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~ 209 (917)
...= +..+|.+|+.++.+....+...+...-++ |.=+++.- .....
T Consensus 81 vkvL---nlDLW~lYl~YVR~~~~~~~~~r~~m~qA---------------------------y~f~l~ki----g~di~ 126 (656)
T KOG1914|consen 81 VKVL---NLDLWKLYLSYVRETKGKLFGYREKMVQA---------------------------YDFALEKI----GMDIK 126 (656)
T ss_pred HHHh---hHhHHHHHHHHHHHHccCcchHHHHHHHH---------------------------HHHHHHHh----ccCcc
Confidence 8655 68899999999987654322321111111 11111110 01234
Q ss_pred chHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHH
Q 002477 210 KHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (917)
Q Consensus 210 ~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~ 289 (917)
++.+|.+|+.++..-+. ++.+ ..+.+++..|.+|.+|+.+. ......+|
T Consensus 127 s~siW~eYi~FL~~vea----------------------------~gk~-ee~QRI~~vRriYqral~tP--m~nlEkLW 175 (656)
T KOG1914|consen 127 SYSIWDEYINFLEGVEA----------------------------VGKY-EENQRITAVRRIYQRALVTP--MHNLEKLW 175 (656)
T ss_pred cchhHHHHHHHHHcccc----------------------------cccH-HHHHHHHHHHHHHHHHhcCc--cccHHHHH
Confidence 56789999999874331 1222 34448999999999999854 34567899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhc
Q 002477 290 DSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRR 369 (917)
Q Consensus 290 ~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~ 369 (917)
.-|..||+.+....-+.+ +.++-
T Consensus 176 ~DY~~fE~~IN~~tarK~---------------------------------------------------------i~e~s 198 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKF---------------------------------------------------------IGERS 198 (656)
T ss_pred HHHHHHHHHHHHHHHHHH---------------------------------------------------------HHhhC
Confidence 999999976422210000 00111
Q ss_pred hhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002477 370 PELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449 (917)
Q Consensus 370 ~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~a 449 (917)
|... .|..+|++....+.. |... +
T Consensus 199 ~~Ym---------------------------~AR~~~qel~~lt~G----------L~r~-------------------~ 222 (656)
T KOG1914|consen 199 PEYM---------------------------NARRVYQELQNLTRG----------LNRN-------------------A 222 (656)
T ss_pred HHHH---------------------------HHHHHHHHHHHHHhh----------hccc-------------------C
Confidence 1111 122222221100000 0000 0
Q ss_pred HhccCCChhhh---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHH
Q 002477 450 VQVNYKTVDHL---ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526 (917)
Q Consensus 450 l~~~~~~~~~l---~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~ 526 (917)
..++|....+- .++|..|+..+..++--..
T Consensus 223 ~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~----------------------------------------------- 255 (656)
T KOG1914|consen 223 PAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL----------------------------------------------- 255 (656)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc-----------------------------------------------
Confidence 00222221100 1556666655543321000
Q ss_pred HcCC--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHhhccCCCChHHHHHH
Q 002477 527 SLGN--LESTRAVYERILDLRIATPQIIINYALLLEEHKY--------------FEDAFRVYERGVKIFKYPHVKDIWVT 590 (917)
Q Consensus 527 ~~g~--~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~--------------~e~A~~~~eral~~f~~P~~~~lw~~ 590 (917)
.|+ -....-+|++++..-+-+|++|+.++.++...++ .+++.++||+++... .-.+..++..
T Consensus 256 -~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly~~ 333 (656)
T KOG1914|consen 256 -DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKENKLLYFA 333 (656)
T ss_pred -cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 000 1223345667776667777777777777776666 678888888888752 1223334444
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 002477 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARA 670 (917)
Q Consensus 591 yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~ 670 (917)
|...-..+++.++.+..-..+++.+.....+ -.-+|..|.++-.+..-.+.|+.+|.+|-+..-....+.+...++++
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy- 411 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY- 411 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH-
Confidence 4433333444445777777888777653332 23578888888777777888888888887654333345566666664
Q ss_pred HHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCH
Q 002477 671 AEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNE 749 (917)
Q Consensus 671 ~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~-~~P~~~~~~w~~~~~fe~~~G~~ 749 (917)
.-.++..-|-.+|+-.++. .++.. .+.+.|..++..+|+-..||.+|++++.. .+|+....+|+.|++||..-|+.
T Consensus 412 ~cskD~~~AfrIFeLGLkk-f~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YCSKDKETAFRIFELGLKK-FGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HhcCChhHHHHHHHHHHHh-cCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 3457777888899988888 77765 67889999999999999999999999987 46777889999999999999999
Q ss_pred HHHHHHHH
Q 002477 750 DTFREMLR 757 (917)
Q Consensus 750 ~~a~~~lr 757 (917)
..+.++-+
T Consensus 489 ~si~~lek 496 (656)
T KOG1914|consen 489 NSILKLEK 496 (656)
T ss_pred HHHHHHHH
Confidence 99998885
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.7e-20 Score=222.83 Aligned_cols=407 Identities=12% Similarity=0.074 Sum_probs=311.6
Q ss_pred CchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHH
Q 002477 209 TKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVI 288 (917)
Q Consensus 209 ~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i 288 (917)
.+.+-|..+|-+...+++.+... .++ ..-....+.-..+.|++++|..+++..+...|...+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~ 81 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDS-------------AGN-EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR 81 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhh-------------ccc-ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH
Confidence 34567999999999888765311 111 1112233455678999999999999999999887654221
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhh
Q 002477 289 FDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNR 368 (917)
Q Consensus 289 ~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~ 368 (917)
.- ... -..++.+.++..+++
T Consensus 82 l~----------~~~----------------------------------------------l~~g~~~~A~~~l~~---- 101 (656)
T PRK15174 82 WV----------ISP----------------------------------------------LASSQPDAVLQVVNK---- 101 (656)
T ss_pred Hh----------hhH----------------------------------------------hhcCCHHHHHHHHHH----
Confidence 10 000 012234555566665
Q ss_pred chhhhhhhHHhhCCCCHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002477 369 RPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446 (917)
Q Consensus 369 ~~~~~~~~~L~~nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~ 446 (917)
++..+|++...|...+.++ .++.++|+..|++++. ++| .+..+|..++..+...|++++|...+
T Consensus 102 --------~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~-l~P-----~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 102 --------LLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL-AFS-----GNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred --------HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC-----CcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 6678999999999988876 4788999999999995 466 67899999999999999999999999
Q ss_pred HHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHH
Q 002477 447 DKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526 (917)
Q Consensus 447 e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~ 526 (917)
++++...|.++ ..+...+. +.+.|++++|...+++++...|. .....+...+.++.
T Consensus 168 ~~~~~~~P~~~----~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~-------------------~~~~~~~~l~~~l~ 223 (656)
T PRK15174 168 RTQAQEVPPRG----DMIATCLS-FLNKSRLPEDHDLARALLPFFAL-------------------ERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHhCCCCH----HHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCC-------------------cchhHHHHHHHHHH
Confidence 99999998887 66655543 67899999999999999876330 12334455567788
Q ss_pred HcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCC
Q 002477 527 SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFED----AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKT 602 (917)
Q Consensus 527 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~----A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~ 602 (917)
..|++++|...|++++...|.++.++.++|.++...|++++ |...|++++.+ +|++..+|..++..+. ..|
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~---~~g 298 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALI---RTG 298 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH---HCC
Confidence 99999999999999999999999999999999999999986 89999999997 8999999988876555 567
Q ss_pred ChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHH
Q 002477 603 KLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREI 682 (917)
Q Consensus 603 ~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ 682 (917)
++++|...|++++...|. +..++..++.++.+.|++++|+..|++++...|.+....+..+. .....|+.++|+..
T Consensus 299 ~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~--al~~~G~~deA~~~ 374 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA--ALLQAGKTSEAESV 374 (656)
T ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH--HHHHCCCHHHHHHH
Confidence 899999999999999999 78899999999999999999999999999999986543333222 23578999999999
Q ss_pred HHHHHHhCCCCch---HHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHH
Q 002477 683 YEQAIESGLPDKD---VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR 738 (917)
Q Consensus 683 ye~al~~~~p~~~---~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~ 738 (917)
|+++++. .|+.. ..++...|.......+...+...+....+-. +.+.+...|..
T Consensus 375 l~~al~~-~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~ 431 (656)
T PRK15174 375 FEHYIQA-RASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGR-QSGIERDEWER 431 (656)
T ss_pred HHHHHHh-ChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcc-cccCChHHHHH
Confidence 9999998 77643 2234455666666666665554454444332 33445667766
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=5.2e-19 Score=216.26 Aligned_cols=201 Identities=11% Similarity=-0.035 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhc
Q 002477 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (917)
Q Consensus 434 ~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (917)
...|++++|+..|+++++.++..+ +.+..| ++.+++..|++++|+.+|++++..+|.. ...
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P-~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~----------------~~~ 308 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIP-PWAQRW--VASAYLKLHQPEKAQSILTELFYHPETI----------------ADL 308 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCC-HHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCC----------------CCC
Confidence 455788888888888877654322 112444 4667778888888888888877665410 001
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---------------PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
....+..++..+...|++++|..++++++...|.. ..++..++.++...|++++|..++++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12344455555677788888888888888776521 345667777788888888888888888775
Q ss_pred cCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 579 FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 579 f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
.|.+..+|...+..+. ..|++++|...+++++...|+ +..+++..|......|++++|..+++++++..|+++
T Consensus 389 --~P~n~~l~~~lA~l~~---~~g~~~~A~~~l~~al~l~Pd--~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 389 --APGNQGLRIDYASVLQ---ARGWPRAAENELKKAEVLEPR--NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred --CCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 6777777776554333 456688888888888888887 667777777777778888888888888888888766
Q ss_pred hH
Q 002477 659 KL 660 (917)
Q Consensus 659 ~~ 660 (917)
.+
T Consensus 462 ~~ 463 (765)
T PRK10049 462 GV 463 (765)
T ss_pred HH
Confidence 44
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=6.5e-19 Score=215.39 Aligned_cols=228 Identities=13% Similarity=0.119 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhccCCChhh---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHH
Q 002477 440 ANARVIFDKAVQVNYKTVDH---LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR 516 (917)
Q Consensus 440 ~~A~~i~e~al~~~~~~~~~---l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (917)
+.|...|+++++..|.+++. ....++.........+++++|+..|++++..++. .|....
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~-----------------~P~~a~ 275 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI-----------------IPPWAQ 275 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----------------CCHHHH
Confidence 78999999999765544422 2233333222335678999999999999876420 123445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC----------
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDLRIAT----PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP---------- 582 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P---------- 582 (917)
.| ++.++...|++++|+.+|++++...|.+ ......++..+.+.|++++|...+++++.. .|
T Consensus 276 ~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~ 351 (765)
T PRK10049 276 RW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPT 351 (765)
T ss_pred HH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCC
Confidence 55 4888999999999999999999988765 356777888889999999999999999986 34
Q ss_pred ---Ch--HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 583 ---HV--KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 583 ---~~--~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
+. ..++..+...+. ..+++++|+.+|++++...|. +..+++.+|.++...|++++|+..|++++...|++
T Consensus 352 ~~p~~~~~~a~~~~a~~l~---~~g~~~eA~~~l~~al~~~P~--n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAK---YSNDLPQAEMRARELAYNAPG--NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred CCCCchHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 22 223333332222 457899999999999999999 68999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchH
Q 002477 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV 696 (917)
Q Consensus 658 ~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~ 696 (917)
..+.+..+++. ...++++.|..+++++++. .|++..
T Consensus 427 ~~l~~~~a~~a--l~~~~~~~A~~~~~~ll~~-~Pd~~~ 462 (765)
T PRK10049 427 INLEVEQAWTA--LDLQEWRQMDVLTDDVVAR-EPQDPG 462 (765)
T ss_pred hHHHHHHHHHH--HHhCCHHHHHHHHHHHHHh-CCCCHH
Confidence 88777776654 6788999999999999999 898863
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.2e-19 Score=212.59 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=260.8
Q ss_pred hhhhHHhhCCCCHHHHHHHHHH--HcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002477 373 ANSVLLRQNPHNVEQWHRRVKI--FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV 450 (917)
Q Consensus 373 ~~~~~L~~nP~~~~~w~~~~~l--~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al 450 (917)
+-..++..+|.+...+..++.. ..++.++|+..|++++. ++| .+...|..+|..+...|+++.|+..|++++
T Consensus 64 l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P-----~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 64 LLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA-VNV-----CQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred HhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3355788899999888777543 46889999999999995 477 678899999999999999999999999999
Q ss_pred hccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCC
Q 002477 451 QVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530 (917)
Q Consensus 451 ~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~ 530 (917)
+.+|.++ .+|..++.++...|++++|+..+++++...| .+...+...+ .+...|+
T Consensus 138 ~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--------------------~~~~a~~~~~-~l~~~g~ 192 (656)
T PRK15174 138 LAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVP--------------------PRGDMIATCL-SFLNKSR 192 (656)
T ss_pred HhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--------------------CCHHHHHHHH-HHHHcCC
Confidence 9999988 9999999999999999999999998876644 2455554443 3677899
Q ss_pred HHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHH---
Q 002477 531 LESTRAVYERILDLRIAT-PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER--- 606 (917)
Q Consensus 531 ~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~--- 606 (917)
+++|..+|++++...|.. ...+...+..+...|++++|...|++++.. .|++..++..++..+. ..|+++.
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~---~~G~~~eA~~ 267 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYY---QSGRSREAKL 267 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH---HcCCchhhHH
Confidence 999999999999987643 444556688889999999999999999997 7888888877654444 3456764
Q ss_pred -HHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHH
Q 002477 607 -ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQ 685 (917)
Q Consensus 607 -Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~ 685 (917)
|...|+++++..|+ +..++..+|.++...|++++|+..|+++++..|+++......+. .+...|++++|+..|++
T Consensus 268 ~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~--~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 268 QAAEHWRHALQFNSD--NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR--ALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHCCCHHHHHHHHHH
Confidence 89999999999998 78999999999999999999999999999999997765544333 33678999999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCC
Q 002477 686 AIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731 (917)
Q Consensus 686 al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~ 731 (917)
+++. .|+.. ......+.++...|+.++|+..|.++++. +|+.
T Consensus 344 al~~-~P~~~--~~~~~~a~al~~~G~~deA~~~l~~al~~-~P~~ 385 (656)
T PRK15174 344 LARE-KGVTS--KWNRYAAAALLQAGKTSEAESVFEHYIQA-RASH 385 (656)
T ss_pred HHHh-Cccch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Chhh
Confidence 9998 78764 34555678888999999999999999988 7763
No 27
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=5.4e-17 Score=199.91 Aligned_cols=517 Identities=12% Similarity=0.071 Sum_probs=277.3
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHH
Q 002477 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162 (917)
Q Consensus 83 ~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~ 162 (917)
+-..+..++.+.+...++.+..-..|.. +.+.|++..|+++|+...+........-++..++..+...|.. ..|..+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~-l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf 429 (1060)
T PLN03218 352 EEENSLAAYNGGVSGKRKSPEYIDAYNR-LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFA 429 (1060)
T ss_pred hhhhhHHHhccccCCCCCchHHHHHHHH-HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHH
Confidence 3455667777777766665555555544 4478999999999999887654433444555666777777776 8899988
Q ss_pred HHHHccCCCC--HHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhh
Q 002477 163 RRYLKYDPSH--IEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240 (917)
Q Consensus 163 ~r~l~~~P~~--~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (917)
+.... |+. +..++..+...|++++|..++..+.... -..+...|..++..+.+.+... .+..++.++
T Consensus 430 ~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd---~A~~vf~eM 498 (1060)
T PLN03218 430 KLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVD---AMFEVFHEM 498 (1060)
T ss_pred HHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHH---HHHHHHHHH
Confidence 87765 543 4566677888999999999888777531 1122333444444333333211 122223222
Q ss_pred hhc--ccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 002477 241 IRK--FTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (917)
Q Consensus 241 i~~--~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~ 318 (917)
... .|+ ...|..+...|.+.|++++|..+|+++....
T Consensus 499 ~~~Gv~Pd--vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--------------------------------------- 537 (1060)
T PLN03218 499 VNAGVEAN--VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--------------------------------------- 537 (1060)
T ss_pred HHcCCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---------------------------------------
Confidence 221 112 2344444444444444444444444443321
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHH--c
Q 002477 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--E 396 (917)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~--~ 396 (917)
..| |...|...+..+ .
T Consensus 538 -------------------------------------------------------------v~P-D~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 538 -------------------------------------------------------------VKP-DRVVFNALISACGQS 555 (1060)
T ss_pred -------------------------------------------------------------CCC-CHHHHHHHHHHHHHC
Confidence 011 233344444433 2
Q ss_pred CCchHHHHHHHHHHhc---cCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCChhhhHHHHHHHHHHHH
Q 002477 397 GNPTKQILTYTEAVRT---VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMEL 472 (917)
Q Consensus 397 ~~~~~a~~~y~~Ai~~---i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~-~~~~~~l~~~w~~~a~~e~ 472 (917)
++.++|.++|.+.... +.| +...|..+...|.+.|+++.|..+|+.+.+.+ +.++ .+|..++..+.
T Consensus 556 G~~deA~~lf~eM~~~~~gi~P------D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~----~tynsLI~ay~ 625 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDP------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP----EVYTIAVNSCS 625 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHH
Confidence 4455555566555431 222 34555666666666666666666666665543 2233 55666666666
Q ss_pred hcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCHHH
Q 002477 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI-ATPQI 551 (917)
Q Consensus 473 ~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p-~~~~~ 551 (917)
+.|++++|..+|+++.... +.++...|..+++.+.+.|++++|..+|+.+.+... .+..+
T Consensus 626 k~G~~deAl~lf~eM~~~G-------------------v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKG-------------------VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcC-------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 6666666666666655321 011345555666666666666666666666665432 24455
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCcCCcHHHHHHH
Q 002477 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET-APADAVKPLYLQY 630 (917)
Q Consensus 552 ~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~-~p~~~~~~l~~~~ 630 (917)
|..++..|.+.|++++|.++|++....-..|+ ...|+..+..+. ..|++++|..+|+++... ..+ +...|..+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~---k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sL 760 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALC---EGNQLPKALEVLSEMKRLGLCP--NTITYSIL 760 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 66666666666666666666666554311232 334555554443 345566666666665543 112 24455555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH----HH-------------------hcCcchHHHHHHHHH
Q 002477 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARA----AE-------------------IFGVPKTREIYEQAI 687 (917)
Q Consensus 631 a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~----~~-------------------~~~~~~ar~~ye~al 687 (917)
...+.+.|+++.|..++.++++..... ...++...+... .+ ......|..+|++++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~p-d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKP-NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 555556666666666666665543221 122222222110 00 011246888999999
Q ss_pred HhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 002477 688 ESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN-EDTFREMLR 757 (917)
Q Consensus 688 ~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~-~~~a~~~lr 757 (917)
+.|...+.. .+........+.+....+..+++.......+. +...+...++- .|+ .++|..++.
T Consensus 840 ~~Gi~Pd~~--T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~-~~~~y~~Li~g---~~~~~~~A~~l~~ 904 (1060)
T PLN03218 840 SAGTLPTME--VLSQVLGCLQLPHDATLRNRLIENLGISADSQ-KQSNLSTLVDG---FGEYDPRAFSLLE 904 (1060)
T ss_pred HCCCCCCHH--HHHHHHHHhcccccHHHHHHHHHHhccCCCCc-chhhhHHHHHh---hccChHHHHHHHH
Confidence 886543332 23333333456677888888887654332222 44566666653 343 346777764
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=2.8e-18 Score=209.04 Aligned_cols=464 Identities=13% Similarity=0.054 Sum_probs=329.1
Q ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchH
Q 002477 62 LWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM--HKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139 (917)
Q Consensus 62 lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~--p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~ 139 (917)
.|...+.-.. ..+.+..|..+|+...... +-++..+...+..+...+++..++.++...++.--. -+..
T Consensus 89 ~~~~~i~~l~--------~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~ 159 (697)
T PLN03081 89 SLCSQIEKLV--------ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQY 159 (697)
T ss_pred eHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchH
Confidence 5666665542 5667899999999887643 335677888888888899999999999988774322 2567
Q ss_pred HHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHH
Q 002477 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCD 219 (917)
Q Consensus 140 iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~ 219 (917)
++...+.++.+.|.. +.|.++|++..+.+...+..++..+.+.|++++|..+|.+++.... .
T Consensus 160 ~~n~Li~~y~k~g~~-~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------~----------- 221 (697)
T PLN03081 160 MMNRVLLMHVKCGML-IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS------D----------- 221 (697)
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------C-----------
Confidence 888888988888887 9999999998775555688899999999999999999998875310 0
Q ss_pred HHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHH
Q 002477 220 LLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIM 299 (917)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~ 299 (917)
|+ ...+..+...+.+.|..+.++.++..++..-... +
T Consensus 222 -------------------------p~--~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~-d--------------- 258 (697)
T PLN03081 222 -------------------------AE--PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-D--------------- 258 (697)
T ss_pred -------------------------CC--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc-c---------------
Confidence 11 1233444444555666666666665544421100 0
Q ss_pred HHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHh
Q 002477 300 VSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379 (917)
Q Consensus 300 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~ 379 (917)
T Consensus 259 -------------------------------------------------------------------------------- 258 (697)
T PLN03081 259 -------------------------------------------------------------------------------- 258 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCCHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCC
Q 002477 380 QNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-YKT 456 (917)
Q Consensus 380 ~nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~-~~~ 456 (917)
+..+...+..| .|+.++|..+|.+.. + .+...|..+...|.+.|++++|..+|+++.+.. ..+
T Consensus 259 -----~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 259 -----TFVSCALIDMYSKCGDIEDARCVFDGMP----E-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred -----ceeHHHHHHHHHHCCCHHHHHHHHHhCC----C-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 00001111111 133445555554421 1 245667888888888888888888888876532 122
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHH
Q 002477 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (917)
Q Consensus 457 ~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~ 536 (917)
. ..+..+...+.+.|.+++|.+++..+++.. ++.+..++..+++++.+.|+++.|..
T Consensus 325 ~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------------------~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 325 Q----FTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------------------FPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred H----HHHHHHHHHHHhccchHHHHHHHHHHHHhC-------------------CCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 3 567777777778888888888888877542 11256677788888888888888888
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 537 ~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
+|+++.+ | +...|..++..|.++|+.++|+++|++.+..--.|+... ++..+..+. ..|.+++|..+|+...+
T Consensus 382 vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~---~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 382 VFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT-FLAVLSACR---YSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHh---cCCcHHHHHHHHHHHHH
Confidence 8888765 2 456788888888888899999999988887533465433 554454443 56789999999999987
Q ss_pred hCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchH
Q 002477 617 TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV 696 (917)
Q Consensus 617 ~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~ 696 (917)
..+-..+...|..+...+.+.|+.++|.++++++ |..+...+|...+......|+++.++.+++++++. .|++.
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-~p~~~- 528 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM-GPEKL- 528 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-CCCCC-
Confidence 5332224667888999999999999999988753 55556677888888778889999999999999888 77654
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 697 KAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 697 ~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
..+..+++++.+.|++++|..+++...+.
T Consensus 529 -~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 529 -NNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -cchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34777788899999999999999988766
No 29
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=3.8e-18 Score=207.89 Aligned_cols=460 Identities=13% Similarity=0.116 Sum_probs=346.2
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHcc--CCCC--HHHHHHH
Q 002477 104 IWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSH--IEDFIEF 179 (917)
Q Consensus 104 lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~--~P~~--~~~~i~~ 179 (917)
-|...+.-+...+....|..+|+......|..-+...|..++..+...+.. ..+..++....+. .|+. ...++..
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 577777777788888888888888776544323456677777776666666 7777777776653 3432 3556667
Q ss_pred HHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHH
Q 002477 180 LVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYY 259 (917)
Q Consensus 180 l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y 259 (917)
+.+.|++++|.++|.++.. |+ ...|+.+...|
T Consensus 168 y~k~g~~~~A~~lf~~m~~----------------------------------------------~~--~~t~n~li~~~ 199 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----------------------------------------------RN--LASWGTIIGGL 199 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----------------------------------------------CC--eeeHHHHHHHH
Confidence 7778888888777654431 11 23578888888
Q ss_pred HHhCcHHHHHHHHHHhhhcccc--hhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHH
Q 002477 260 IRRELFEKARDIFEEGMMTVVT--VRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMA 337 (917)
Q Consensus 260 ~~~g~~e~A~~~~e~al~~~~~--~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (917)
.+.|++++|..+|++++..... ...+..+..++.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~-------------------------------------------- 235 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA-------------------------------------------- 235 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh--------------------------------------------
Confidence 8888899998888888764321 111111111111
Q ss_pred HHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCc
Q 002477 338 EFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMK 417 (917)
Q Consensus 338 ~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~ 417 (917)
-.+....+.+++..+++.-
T Consensus 236 ---------------------------------------------------------~~~~~~~~~~l~~~~~~~g---- 254 (697)
T PLN03081 236 ---------------------------------------------------------GLGSARAGQQLHCCVLKTG---- 254 (697)
T ss_pred ---------------------------------------------------------cCCcHHHHHHHHHHHHHhC----
Confidence 0122233444444444431
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHH
Q 002477 418 AVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRR 497 (917)
Q Consensus 418 ~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~ 497 (917)
...+..++..+...|.+.|+++.|+.+|++.. +.++ ..|..++..+.++|++++|..+|+++....
T Consensus 255 -~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~----vt~n~li~~y~~~g~~~eA~~lf~~M~~~g------ 320 (697)
T PLN03081 255 -VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSG------ 320 (697)
T ss_pred -CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCCh----hHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------
Confidence 11255778999999999999999999999874 4456 889999999999999999999999987531
Q ss_pred hhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 002477 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (917)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~g~~e~A~~~~eral 576 (917)
+..+...+...+..+...|.++.|..++..+++.. +.+..++..+..+|.+.|++++|.++|++..
T Consensus 321 -------------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 321 -------------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred -------------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 11256788888999999999999999999999986 4466789999999999999999999999876
Q ss_pred hccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002477 577 KIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (917)
Q Consensus 577 ~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~-p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p 655 (917)
. |+ ...|+..+..+. ..|+.++|.++|++.++.. .+ +...|..+.......|..++|..+|+.+.+..+
T Consensus 388 ~----~d-~~t~n~lI~~y~---~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 388 R----KN-LISWNALIAGYG---NHGRGTKAVEMFERMIAEGVAP--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred C----CC-eeeHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 5 33 345888776665 4678999999999998752 22 467788888889999999999999999998766
Q ss_pred CCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHH
Q 002477 656 NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEF 735 (917)
Q Consensus 656 ~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~ 735 (917)
-.+....|...+....+.|.+++|..+++++- . .|+. .+|..+.......|+++.|+.++++.++. .|. +...
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-~p~~---~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-~p~-~~~~ 530 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP-F-KPTV---NMWAALLTACRIHKNLELGRLAAEKLYGM-GPE-KLNN 530 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-C-CCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHhCC-CCC-CCcc
Confidence 66677788888888889999999999987642 2 3332 56999999999999999999999999988 776 5677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhH
Q 002477 736 WNRWHEFEVNHGNEDTFREMLRIKRS 761 (917)
Q Consensus 736 w~~~~~fe~~~G~~~~a~~~lr~~r~ 761 (917)
+..+...+.+.|+.++|.++++.-+.
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88999999999999999999864443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=5.7e-16 Score=176.33 Aligned_cols=604 Identities=16% Similarity=0.140 Sum_probs=345.3
Q ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHH
Q 002477 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFIT 119 (917)
Q Consensus 40 ~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~ 119 (917)
+.+..+..++...+++.|.....|........ ..|+.+++....=.|-...|+++..|...+....+++++.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE--------qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE--------QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--------HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 45566677777777777777777776666553 4456677776666666667777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC-H-------HHHHHHHHhcccHHHHHH
Q 002477 120 KARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH-I-------EDFIEFLVKSKLWQEAAE 191 (917)
Q Consensus 120 ~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~-~-------~~~i~~l~~~~~~~~A~~ 191 (917)
+|+-.|.|||+..|. +.+....+..++.+.|.. ..|...|.+.+.++|.. + ...+.++...+.-+.|++
T Consensus 225 qA~~cy~rAI~~~p~--n~~~~~ers~L~~~~G~~-~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS--NWELIYERSSLYQKTGDL-KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhcCCc--chHHHHHHHHHHHHhChH-HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777774 233333445556666766 67777777777777732 1 111223333444444444
Q ss_pred HHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHH
Q 002477 192 RLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDI 271 (917)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~ 271 (917)
.+...+. .+...+. ..-...++..|++...+++|...
T Consensus 302 ~le~~~s------------------------~~~~~~~-------------------~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 302 ALEGALS------------------------KEKDEAS-------------------LEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHh------------------------hcccccc-------------------ccHHHHHHHHHHHhHHHHHhhHH
Confidence 4443332 1111110 11234556666777777776655
Q ss_pred HHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCc
Q 002477 272 FEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHD 351 (917)
Q Consensus 272 ~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 351 (917)
.........+..+- =|+.+. . +..+.+.. +-.+.
T Consensus 339 i~~~~~r~~e~d~~--e~~~~~---~----------~~~~~~~~-------------------------------~~~~~ 372 (895)
T KOG2076|consen 339 IVDDRNRESEKDDS--EWDTDE---R----------RREEPNAL-------------------------------CEVGK 372 (895)
T ss_pred HHHHhccccCCChh--hhhhhh---h----------cccccccc-------------------------------ccCCC
Confidence 55444422211110 000000 0 00000000 00000
Q ss_pred cchHHHH---H-HHHHHhhhhc-hhhhhhhHHhhC--CC-CHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCccCCC
Q 002477 352 VKDVDLR---L-ARLEHLMNRR-PELANSVLLRQN--PH-NVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGK 421 (917)
Q Consensus 352 ~~~~~~~---l-~~~e~l~~~~-~~~~~~~~L~~n--P~-~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~~~~ 421 (917)
...++++ + ..+-++-+.. ++.+...+...| |. +++.....+..+. +++..|+..|..++.. .+ -.
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~----~~ 447 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EG----YQ 447 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-cc----cc
Confidence 0011111 1 1111111111 123333344445 33 4566666777774 6788999999998854 22 23
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhH------
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV------ 495 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~------ 495 (917)
+..+|...|.+|...|.++.|...|+++|...|.+. ++.+.++.++.+.|+.++|...+.+.....+...
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 567999999999999999999999999999999999 9999999999999999999999998663221100
Q ss_pred -HHh-----hh---hcCCch---------h----hhh--hh---------------------------------------
Q 002477 496 -RRR-----VA---ADGNEP---------V----QMK--LH--------------------------------------- 512 (917)
Q Consensus 496 -~~~-----~~---~~~~~~---------~----~~~--~~--------------------------------------- 512 (917)
.++ .. ..|... + ..+ +|
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 111 11 011110 0 000 00
Q ss_pred ----------------ccHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhccC--CCHHHHHH--H--HHHHHHccCHH
Q 002477 513 ----------------KSLRLWT----FYVDLEESLGNLESTRAVYERILDLRI--ATPQIIIN--Y--ALLLEEHKYFE 566 (917)
Q Consensus 513 ----------------~~~~~w~----~~~~l~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~--~--a~~~~~~g~~e 566 (917)
-+.+-|. ..+..+.+.+.+++|..+...++.... ..+...-. + ...-...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 0112222 222234455666666666666665432 12221111 1 11223456777
Q ss_pred HHHHHHHHHhhccC---CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHH
Q 002477 567 DAFRVYERGVKIFK---YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRA 643 (917)
Q Consensus 567 ~A~~~~eral~~f~---~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A 643 (917)
.|+....-.+..|. +|....+|+.++..+... ++-..-...+.+++...|. .++.+.+.+|++....|.+..|
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~---~q~v~~~R~~~~~~~~~~~-~~~~l~~i~gh~~~~~~s~~~A 759 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKY---GQRVCYLRLIMRLLVKNKD-DTPPLALIYGHNLFVNASFKHA 759 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCcc-CCcceeeeechhHhhccchHHH
Confidence 77777766666432 344456777555544432 1122333344444444444 3588899999999999999999
Q ss_pred HHHHHHHHhhCCCCChHH--HHHHHHHHHHHh------cCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhH
Q 002477 644 MKVYDQATKAVPNHEKLG--MYEIYIARAAEI------FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR 715 (917)
Q Consensus 644 ~~~y~~al~~~p~~~~~~--l~~~~i~~~~~~------~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~ 715 (917)
+.+|-++...+|++|-.. +-..++..+.+. ..+-+......+--+. --.....++..++|+++...|=.--
T Consensus 760 l~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l-R~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 760 LQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL-RRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHcccHHH
Confidence 999999999999988653 333344332211 1123333444443333 1111233789999999999999999
Q ss_pred HHHHHHHHHccCCCCC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 716 ARGIYVFASQFADPRS-----D-----TEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 716 Ar~i~~~a~~~~~P~~-----~-----~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
|..+|++++...+|.. + ...--.+.-++...||..-|+.++.
T Consensus 839 A~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 839 AVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 9999999999842211 1 1222234555777888888887773
No 31
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.85 E-value=4.1e-17 Score=174.37 Aligned_cols=474 Identities=20% Similarity=0.232 Sum_probs=268.0
Q ss_pred hHHHHHHhhCCCChHHHHHHHHHHHhC---------------------ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 002477 14 LLYEEELLRNPFSLKLWWRYLVAKREA---------------------PFKKRFVIYERALKALPGSYKLWHAYLIERLS 72 (917)
Q Consensus 14 ~~~E~~l~~~P~~~~~W~~yi~~~~~~---------------------~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~ 72 (917)
--||..|++--.+....++||+++..- ...++..+|.+|+..+|++.++|..|+.++.
T Consensus 38 r~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~k- 116 (568)
T KOG2396|consen 38 RDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCK- 116 (568)
T ss_pred HHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-
Confidence 468999999888999999999875311 2345688999999999999999999999995
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHc
Q 002477 73 IVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE 151 (917)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~-~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~ 151 (917)
..+.+.++.++|..+|..+|++|.+|+..|.++++-+ +++.||.+|.|+|+.+| .++.+|..|+++....
T Consensus 117 -------k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np--dsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 117 -------KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP--DSPKLWKEYFRMELMY 187 (568)
T ss_pred -------HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHH
Confidence 4445889999999999999999999999999999877 49999999999999999 6899999999997643
Q ss_pred CCChHhHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHH--HHHHHHHHhccccccc
Q 002477 152 GIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRL--WLELCDLLTTHATEIS 229 (917)
Q Consensus 152 ~~~~~~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~l--w~~~~~~~~~~~~~~~ 229 (917)
- +-...-++.+..+.++...=+ .+.+.+-..+..-++. ..+..+..- -.+..+++..-+
T Consensus 188 ~----~Kl~~rr~~~g~~~~~~~~ei------e~ge~~~~~~~~s~~~-----~~~~~k~~e~~~~~~~d~~kel~---- 248 (568)
T KOG2396|consen 188 A----EKLRNRREELGLDSSDKDEEI------ERGELAWINYANSVDI-----IKGAVKSVELSVAEKFDFLKELQ---- 248 (568)
T ss_pred H----HHHHHHHHHhccccchhHHHH------HHHHHHHHhhccchhh-----hhcchhhcchHHHHHHHHHHHHH----
Confidence 2 223333444554444321000 0111111111100100 000000000 000000000000
Q ss_pred cccHHHHHHhhhhcccchhhHHHHHHHHHHHH-------------------hCcHHHHHHHHHHhhhcccchhchHHHHH
Q 002477 230 GLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR-------------------RELFEKARDIFEEGMMTVVTVRDFSVIFD 290 (917)
Q Consensus 230 ~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~-------------------~g~~e~A~~~~e~al~~~~~~~d~~~i~~ 290 (917)
..++......+|++ +-+|..+|+-... --.-+....+|++++.+++|.. +|.
T Consensus 249 ----k~i~d~~~~~~~~n-p~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~s----m~e 319 (568)
T KOG2396|consen 249 ----KNIIDDLQSKAPDN-PLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTES----MWE 319 (568)
T ss_pred ----HHHHHHHhccCCCC-CccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHH----HHH
Confidence 01111111123332 2233333322211 1123445689999999988764 445
Q ss_pred HHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccc-hHHHHHHHHHHhhhhc
Q 002477 291 SYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK-DVDLRLARLEHLMNRR 369 (917)
Q Consensus 291 ~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~e~l~~~~ 369 (917)
-|..|-......... . .-+..-++ +.+.+.-+.+.+... .+......+..+-+ +
T Consensus 320 ~YI~~~lE~~~~~r~--------~-------------~I~h~~~~---~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~-~ 374 (568)
T KOG2396|consen 320 CYITFCLERFTFLRG--------K-------------RILHTMCV---FRKAHELKLLSECLYKQYSVLLLCLNTLNE-A 374 (568)
T ss_pred HHHHHHHHHHHhhhh--------h-------------HHHHHHHH---HHHHHHhcccccchHHHHHHHHHHHhccch-H
Confidence 555443222211000 0 00000011 111111111111100 00000011111100 0
Q ss_pred hhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHH---HHhccCCCccCCCcHHHHHHHHHHHHhcCC-HH--HHH
Q 002477 370 PELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTE---AVRTVDPMKAVGKPHTLWVAFAKLYETYKD-IA--NAR 443 (917)
Q Consensus 370 ~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~---Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~-~~--~A~ 443 (917)
-+........+..+++..|+.++...........-.|.+ .++.. + .......|.... .++ +. .=.
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~-~---~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ-V---CSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-h---cchhHHHHHHHh-----hccchhHHHHH
Confidence 111112223567778888888887765221111111221 22110 1 012334444433 222 22 223
Q ss_pred HHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHH
Q 002477 444 VIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (917)
Q Consensus 444 ~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 523 (917)
.++..++++...+.. .+-..|.++..+.+.+..|+.+|.+....|| .|..++..++.
T Consensus 446 ~Ii~a~~s~~~~~~~---tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp--------------------~sl~l~r~miq 502 (568)
T KOG2396|consen 446 LIISALLSVIGADSV---TLKSKYLDWAYESGGYKKARKVYKSLQELPP--------------------FSLDLFRKMIQ 502 (568)
T ss_pred HHHHHHHHhcCCcee---ehhHHHHHHHHHhcchHHHHHHHHHHHhCCC--------------------ccHHHHHHHHH
Confidence 345555554433332 4555566666888899999999999888877 47788888888
Q ss_pred HHHHc--CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC
Q 002477 524 LEESL--GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (917)
Q Consensus 524 l~~~~--g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~ 583 (917)
++..+ -+...++.+|++++...-.+|.+|.+|-.++..+|..+.+-.+|.||++.. .|.
T Consensus 503 ~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl-~~~ 563 (568)
T KOG2396|consen 503 FEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTL-QGE 563 (568)
T ss_pred HHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhh-Chh
Confidence 87544 347888999999998877889999999999999999999999999998753 344
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.9e-17 Score=172.14 Aligned_cols=228 Identities=16% Similarity=0.295 Sum_probs=193.4
Q ss_pred HHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHh
Q 002477 394 IFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473 (917)
Q Consensus 394 l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~ 473 (917)
++.|+...+...|..+|. ++| .+..+++.+|..|...++.+.-...|.+|..++|.++ .+|...+.|..-
T Consensus 337 fL~g~~~~a~~d~~~~I~-l~~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~fl 406 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIK-LDP-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFL 406 (606)
T ss_pred hhcCCchhhhhhHHHHHh-cCc-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHH
Confidence 445777888899999995 466 5778899999999999999999999999999999999 999999999999
Q ss_pred cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHH
Q 002477 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 474 ~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
.+++++|..-|++++++.| .+.-.+...+-++.+++.++++...|+.++...|..|.++.
T Consensus 407 L~q~e~A~aDF~Kai~L~p--------------------e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~ 466 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDP--------------------ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN 466 (606)
T ss_pred HHHHHHHHHHHHHHhhcCh--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999976 34455555666667788999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHH---HHHHH--HHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHH
Q 002477 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV---TYLSK--FVKRYGKTKLERARELFENAVETAPADAVKPLYL 628 (917)
Q Consensus 554 ~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~---~yl~~--~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~ 628 (917)
.+|.++-.+++|++|.+.|..++.+ .|....+.. -++.+ ++.+ -.+++.+|..++.+|++.+|. |...+.
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk--ce~A~~ 541 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK--CEQAYE 541 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch--HHHHHH
Confidence 9999999999999999999999998 555111000 01111 1111 236899999999999999999 899999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 629 QYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 629 ~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
.+|+++.++|+.++|+.+|++++..--.
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999877544
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=9.2e-16 Score=189.14 Aligned_cols=323 Identities=12% Similarity=0.089 Sum_probs=255.8
Q ss_pred HHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CChhhhH
Q 002477 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY-KTVDHLA 461 (917)
Q Consensus 385 ~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~-~~~~~l~ 461 (917)
+..|...+..+ .++.+.|..+|.++...- +..+...|..+...|.+.|++++|..+|+.+..... .+.
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-----v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~---- 542 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-----VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR---- 542 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH----
Confidence 33444444444 356788999999988641 113678999999999999999999999999976532 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~ 540 (917)
.+|..++..+.+.|++++|.++|+++... .+ +.++...|..++..+.+.|++++|..+|++
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------------------i~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHP------------------IDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78999999999999999999999998742 11 112578899999999999999999999999
Q ss_pred HHhcc-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-
Q 002477 541 ILDLR-IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA- 618 (917)
Q Consensus 541 al~~~-p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~- 618 (917)
+.+.. +.++.+|..+...+.+.|++++|..+|++....--.|+ ...|+..+..+. ..+++++|..+|+.+++..
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~---k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG---HAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCC
Confidence 99986 35678999999999999999999999999988522455 345766665544 5678999999999999863
Q ss_pred CcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHH
Q 002477 619 PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698 (917)
Q Consensus 619 p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~ 698 (917)
++ +...|..++..+.+.|+.++|..+|+.+..... .+....|+..|..+.+.|.+++|..+|+++...|...+. .
T Consensus 681 ~p--d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~--~ 755 (1060)
T PLN03218 681 KL--GTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT--I 755 (1060)
T ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH--H
Confidence 33 578999999999999999999999999876432 245677999999888999999999999999876443333 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 002477 699 MCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV 744 (917)
Q Consensus 699 ~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~ 744 (917)
.|..+...+.+.|+++.|..+|..+.+. ....+...+...+.+..
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 4666677888999999999999999987 23335677777776644
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4.2e-17 Score=185.38 Aligned_cols=300 Identities=15% Similarity=0.137 Sum_probs=239.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCc
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 505 (917)
++..|..+...|+++.|...|.++++.+|.++ .+|..++.++.+.|++++|+.++++++..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----------- 102 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT----------- 102 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-----------
Confidence 44456677888999999999999999999888 899999999999999999999999998765410
Q ss_pred hhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 506 ~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
.......|..++.++...|+++.|..+|+++++..|.+..++..++.++...|++++|...|++++.. .|...
T Consensus 103 -----~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 175 (389)
T PRK11788 103 -----REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL--GGDSL 175 (389)
T ss_pred -----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh--cCCcc
Confidence 00123578888999999999999999999999998988999999999999999999999999999986 44331
Q ss_pred --HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHH
Q 002477 586 --DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (917)
Q Consensus 586 --~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~ 663 (917)
.+...|..........+++++|...|+++++..|. ....++.+|.++.+.|++++|+.+|++++...|.+. ...+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~ 252 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ--CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-SEVL 252 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-HHHH
Confidence 12222222222222568899999999999999988 678999999999999999999999999999887642 2333
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 002477 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFE 743 (917)
Q Consensus 664 ~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe 743 (917)
...+..+...|++++|...++++++. .|+.. .+..++.++.+.|+++.|..+|+++++. .|+ +. .+..+....
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~---~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~-~~-~~~~l~~~~ 325 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE-YPGAD---LLLALAQLLEEQEGPEAAQALLREQLRR-HPS-LR-GFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCch---HHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcC-HH-HHHHHHHHh
Confidence 44444456789999999999999998 88764 3588899999999999999999999988 786 44 444445444
Q ss_pred HH---cCCHHHHHHHHH
Q 002477 744 VN---HGNEDTFREMLR 757 (917)
Q Consensus 744 ~~---~G~~~~a~~~lr 757 (917)
.. +|+.+.+.++++
T Consensus 326 ~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 326 LAEAEEGRAKESLLLLR 342 (389)
T ss_pred hhccCCccchhHHHHHH
Confidence 42 456666665553
No 35
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.82 E-value=2.7e-16 Score=165.11 Aligned_cols=462 Identities=19% Similarity=0.295 Sum_probs=295.9
Q ss_pred CCCcchHHHHHHhhCCCChHHHHHHHHHHH-hCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 002477 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETL 87 (917)
Q Consensus 9 ~~~~~~~~E~~l~~~P~~~~~W~~yi~~~~-~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a 87 (917)
+..+.+..-+.|+-||.|+..|..+|++.. +....+.+..||....-+|--...|..|+.-+. ...+|..+
T Consensus 24 i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~EL--------A~~df~sv 95 (660)
T COG5107 24 IHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGEL--------ARKDFRSV 95 (660)
T ss_pred CCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchh--------hhhhHHHH
Confidence 334667889999999999999999999764 557788889999999999999999999998764 66789999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhccc-H-----HHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHcCCC----
Q 002477 88 NNTFERALVTMHKMPRIWIMYLETLTSQKF-I-----TKARRTFDRALC---ALPVTQHDRIWEIYLRFVEQEGIP---- 154 (917)
Q Consensus 88 ~~~~eraL~~~p~~~~lw~~y~~~~~~~~~-~-----~~ar~~~~rAL~---~~P~~~~~~iw~~y~~~~~~~~~~---- 154 (917)
..+|.|||+.-- +.++|..|+.+..+-++ + ..+..+|+-.+. ..| ++..+|..|+.|.......
T Consensus 96 E~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~--~s~~~W~ey~~fle~~~~~~kwE 172 (660)
T COG5107 96 ESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEP--QSENYWDEYGLFLEYIEELGKWE 172 (660)
T ss_pred HHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccc--cccchHHHHHHHHHhccccccHH
Confidence 999999998643 59999999998865431 1 123344444444 555 7899999999997643211
Q ss_pred ----hHhHHHHHHHHHccCCCC----HHHHHHHHHhc-------------ccHHHHHHHHHHHhcCCc--------cccc
Q 002477 155 ----IETSLRVYRRYLKYDPSH----IEDFIEFLVKS-------------KLWQEAAERLASVLNDDQ--------FYSI 205 (917)
Q Consensus 155 ----~~~a~~~~~r~l~~~P~~----~~~~i~~l~~~-------------~~~~~A~~~l~~~l~~~~--------~~~~ 205 (917)
++..++.|.|+|+.--.+ |..|-.+.... --|-.|...|+++.+... +...
T Consensus 173 eQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 173 EQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 356899999999964444 44444333221 125567777777764311 1110
Q ss_pred ---cCCCchHHHHHHHHHHhcccccccccc----HHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhc
Q 002477 206 ---KGKTKHRLWLELCDLLTTHATEISGLN----VDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT 278 (917)
Q Consensus 206 ---~~~~~~~lw~~~~~~~~~~~~~~~~~~----~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~ 278 (917)
...+...-|+.++.+...++-...+-. +.-+..+++.-|+-. .++|+....|.+..++-++|..+.++++.-
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~-~evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYA-EEVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 111334447777766665554332111 111222333322221 233443333333333333333333333332
Q ss_pred ccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHH
Q 002477 279 VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLR 358 (917)
Q Consensus 279 ~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 358 (917)
.|
T Consensus 332 sp------------------------------------------------------------------------------ 333 (660)
T COG5107 332 SP------------------------------------------------------------------------------ 333 (660)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred HHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCC
Q 002477 359 LARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD 438 (917)
Q Consensus 359 l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~ 438 (917)
.+.+.++.+|+-.++
T Consensus 334 -----------------------------------------------------------------sL~~~lse~yel~nd 348 (660)
T COG5107 334 -----------------------------------------------------------------SLTMFLSEYYELVND 348 (660)
T ss_pred -----------------------------------------------------------------chheeHHHHHhhccc
Confidence 344555555555555
Q ss_pred HHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhc
Q 002477 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (917)
Q Consensus 439 ~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~-----~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (917)
-+.....|++++. .+-..|...+.. -||++...+++-+-. .+
T Consensus 349 ~e~v~~~fdk~~q----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~-----------------------~k 395 (660)
T COG5107 349 EEAVYGCFDKCTQ----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI-----------------------NK 395 (660)
T ss_pred HHHHhhhHHHHHH----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH-----------------------hh
Confidence 5555555555443 111111111100 112221111111111 11
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE-EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~-~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
-.-+|..+.+...+..-++.|+++|-++-+.....+.+++.-|.++. ..|++..|.++|+-|+.. +|++...-..|+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34567777777666667888888888888877777888777776664 468999999999999996 677766666777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHH
Q 002477 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~ 663 (917)
..++ ..++-+.||.+|+.++........+.+|-.+..+|...|+...+..+=+|....+|......+|
T Consensus 474 ~fLi---~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF 541 (660)
T COG5107 474 LFLI---RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVF 541 (660)
T ss_pred HHHH---HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHH
Confidence 6555 3467899999999999887664568999999999999999999999999999999985544443
No 36
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.82 E-value=7.3e-16 Score=169.87 Aligned_cols=449 Identities=17% Similarity=0.256 Sum_probs=299.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhcC---C--CCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHH
Q 002477 49 YERALKALPGSYKLWHAYLIERLSIVKN---L--PITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARR 123 (917)
Q Consensus 49 yeral~~~P~s~~lW~~yl~~~~~~~~~---~--~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~ 123 (917)
....+...|++.+.|............. + .-.......++.+|...|...|.+...|..|+.+..+.|....+.+
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~ 100 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVK 100 (577)
T ss_pred cchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456666777777775444332211111 0 0123345889999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHc-CCChHhHHHHHHHHHccCCCC------HHHHHHHHHhcccHHHHHHHHHHH
Q 002477 124 TFDRALCALPVTQHDRIWEIYLRFVEQE-GIPIETSLRVYRRYLKYDPSH------IEDFIEFLVKSKLWQEAAERLASV 196 (917)
Q Consensus 124 ~~~rAL~~~P~~~~~~iw~~y~~~~~~~-~~~~~~a~~~~~r~l~~~P~~------~~~~i~~l~~~~~~~~A~~~l~~~ 196 (917)
+|+|+++..| .+..+|..|+.|+... +.+ ++.++.|++++.....+ |+.||++...++++.....+|.++
T Consensus 101 Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~-~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRi 177 (577)
T KOG1258|consen 101 VFERGVQAIP--LSVDLWLSYLAFLKNNNGDP-ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERI 177 (577)
T ss_pred HHHHHHHhhh--hHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999999 6899999999998764 455 88999999999988764 899999999999999999999999
Q ss_pred hcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhh
Q 002477 197 LNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGM 276 (917)
Q Consensus 197 l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al 276 (917)
+..|.+.. -..+..+.+++.+++..+. +..+.++ ++-...+.- ...+....-.+..+..+
T Consensus 178 leiP~~~~------~~~f~~f~~~l~~~~~~~l-~~~d~~~------------~l~~~~~~~-~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 178 LEIPLHQL------NRHFDRFKQLLNQNEEKIL-LSIDELI------------QLRSDVAER-SKITHSQEPLEELEIGV 237 (577)
T ss_pred HhhhhhHh------HHHHHHHHHHHhcCChhhh-cCHHHHH------------HHhhhHHhh-hhcccccChhHHHHHHH
Confidence 98753211 1134455555555443221 1111111 111000000 00000000000000000
Q ss_pred hcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHH
Q 002477 277 MTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVD 356 (917)
Q Consensus 277 ~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 356 (917)
..+ +.... .++
T Consensus 238 ~~~------------------------~~~s~---------------------------------------------~l~ 248 (577)
T KOG1258|consen 238 KDS------------------------TDPSK---------------------------------------------SLT 248 (577)
T ss_pred hhc------------------------cCccc---------------------------------------------hhh
Confidence 000 00000 000
Q ss_pred HHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccC----CCcHHHHHHHHHH
Q 002477 357 LRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAV----GKPHTLWVAFAKL 432 (917)
Q Consensus 357 ~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~----~~~~~lw~~~a~~ 432 (917)
.....+.+.. .+ +..+--........+..|+..|+. |...+ ......|..|..+
T Consensus 249 ~~~~~l~~~~----------~~----------~~~~~~~s~~~~~kr~~fE~~Ikr--pYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 249 EEKTILKRIV----------SI----------HEKVYQKSEEEEEKRWGFEEGIKR--PYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred HHHHHHHHHH----------HH----------HHHHHHhhHhHHHHHHhhhhhccc--cccccCcccHHHHHHHHHHhhh
Confidence 0000000000 00 000000111223455667776654 32211 1245779999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhh
Q 002477 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (917)
Q Consensus 433 ~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (917)
.+..|+++.....|++++-...... .+|..|+......|..+-|..++.+++.+. .+
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~----efWiky~~~m~~~~~~~~~~~~~~~~~~i~-------------------~k 363 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYD----EFWIKYARWMESSGDVSLANNVLARACKIH-------------------VK 363 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhH----HHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------------------CC
Confidence 9999999999999999998777777 999999999999999999999999998762 23
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHhhccCCCChHHH-H
Q 002477 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFR---VYERGVKIFKYPHVKDI-W 588 (917)
Q Consensus 513 ~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~---~~eral~~f~~P~~~~l-w 588 (917)
..+.+..+++.+++..|+++.|+.+|+++.+-.|....+-+..+.++.+.|+.+.+.. .+...+.--..+..... .
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 4788899999999999999999999999999889999999999999999999999994 33333332112222221 1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhC
Q 002477 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (917)
Q Consensus 589 ~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g 638 (917)
..|. .+... -.++.+.|+.++.++++..|+ +..+|..+..++..++
T Consensus 444 ~~~~-r~~~~-i~~d~~~a~~~l~~~~~~~~~--~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFA-RLRYK-IREDADLARIILLEANDILPD--CKVLYLELIRFELIQP 489 (577)
T ss_pred HHHH-HHHHH-HhcCHHHHHHHHHHhhhcCCc--cHHHHHHHHHHHHhCC
Confidence 1121 12111 235789999999999999999 8999999999988765
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3e-16 Score=166.87 Aligned_cols=238 Identities=13% Similarity=0.200 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCc
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 505 (917)
.+.-|.|+.-.|+.-.|..-|+++++.+|..+ .+|+..+.+++..++.++..+.|.+|..++|
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp------------- 391 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADENQSEKMWKDFNKAEDLDP------------- 391 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-------------
Confidence 44455666667777777777777777777776 6677777777776666666666666666644
Q ss_pred hhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 506 ~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
.++.+++..+.+..-+++++.|.+-|++++.++|.+.-.++.++..+.+.+.++++...|+.++.. +|+..
T Consensus 392 -------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~ 462 (606)
T KOG0547|consen 392 -------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCP 462 (606)
T ss_pred -------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCc
Confidence 355555566666555566666666666666666666555555555555555555555555555553 45555
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHH
Q 002477 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665 (917)
Q Consensus 586 ~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~ 665 (917)
+.++.|...+. .+++++.|...|+.|+++.|.. ..+++ +....+...
T Consensus 463 Evy~~fAeiLt---DqqqFd~A~k~YD~ai~LE~~~--~~~~v----------------------------~~~plV~Ka 509 (606)
T KOG0547|consen 463 EVYNLFAEILT---DQQQFDKAVKQYDKAIELEPRE--HLIIV----------------------------NAAPLVHKA 509 (606)
T ss_pred hHHHHHHHHHh---hHHhHHHHHHHHHHHHhhcccc--ccccc----------------------------cchhhhhhh
Confidence 55555544444 3344555555555555555541 00111 222222222
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 666 YIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 666 ~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
.+...++ +++..|..++++|++. .|... ..+..+|.++.+.|++++|..+|++++.+
T Consensus 510 ~l~~qwk-~d~~~a~~Ll~KA~e~-Dpkce--~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 510 LLVLQWK-EDINQAENLLRKAIEL-DPKCE--QAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred Hhhhchh-hhHHHHHHHHHHHHcc-CchHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2221111 4556666666666666 55444 34566666666666666666666666665
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=6.6e-17 Score=183.78 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=238.0
Q ss_pred HHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHH
Q 002477 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (917)
Q Consensus 392 ~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e 471 (917)
..+..++.++|+..|.+++.. +| .+..+|..+|.++...|+++.|..++++++..++........++..++..+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV-DP-----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc-Cc-----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 334467889999999999964 66 567899999999999999999999999999865433323346788999999
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHH-
Q 002477 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ- 550 (917)
Q Consensus 472 ~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~- 550 (917)
...|++++|+.+|++++...| .+...+..++.++...|++++|...|++++...|.++.
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGD--------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCc--------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 999999999999999998654 35678889999999999999999999999998876532
Q ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHH
Q 002477 551 ----IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPL 626 (917)
Q Consensus 551 ----~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l 626 (917)
.+..+|..+...|++++|...|+++++. .|.....+..++..+. ..|++++|...|+++++..|.. ...+
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~-~~~~ 251 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLAL---AQGDYAAAIEALERVEEQDPEY-LSEV 251 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHChhh-HHHH
Confidence 5677899999999999999999999997 6877777766544333 4678999999999999988862 2567
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 002477 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAEL 706 (917)
Q Consensus 627 ~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~l 706 (917)
+..++..+...|+.++|+..++++++..|+.... ...+......|++++|..+|+++++. .|+... +..+...
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~---~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~---~~~l~~~ 324 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLL---LALAQLLEEQEGPEAAQALLREQLRR-HPSLRG---FHRLLDY 324 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHH---HHHHHHH
Confidence 7888999999999999999999999999875432 33444456789999999999999999 887653 3222222
Q ss_pred HH---HcCChhHHHHHHHHHHc
Q 002477 707 EK---SLGEIDRARGIYVFASQ 725 (917)
Q Consensus 707 e~---~~g~~~~Ar~i~~~a~~ 725 (917)
.. ..|+.++|..++++.++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 22 25688888888887765
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.9e-15 Score=158.64 Aligned_cols=201 Identities=19% Similarity=0.206 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhc
Q 002477 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (917)
Q Consensus 423 ~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~ 502 (917)
+...+-.|.+|.-.++.+.|..+|++||+.+|+.. .+|...+-=++..+|...|+..|++|+.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~----~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p---------- 395 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL----SAWTLMGHEYVEMKNTHAAIESYRRAVDINP---------- 395 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh----HHHHHhhHHHHHhcccHHHHHHHHHHHhcCc----------
Confidence 35667889999999999999999999999999998 9999999989999999999999999999977
Q ss_pred CCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC
Q 002477 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (917)
Q Consensus 503 ~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P 582 (917)
.+.+.|+.+++.++.++...-|.-.|++++.++|+++.+|..+|.+|++.++.++|++.|.+++.. .+-
T Consensus 396 ----------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~dt 464 (559)
T KOG1155|consen 396 ----------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GDT 464 (559)
T ss_pred ----------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-ccc
Confidence 588999999999999999999999999999999999999999999999999999999999999996 232
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-------CcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002477 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA-------PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654 (917)
Q Consensus 583 ~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~-------p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~ 654 (917)
...++. ++.++.+++ ++.++|...|+++++.. |. ...+.+-++.++.+.+++++|-....+++...
T Consensus 465 -e~~~l~-~LakLye~l--~d~~eAa~~yek~v~~~~~eg~~~~~--t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 465 -EGSALV-RLAKLYEEL--KDLNEAAQYYEKYVEVSELEGEIDDE--TIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred -chHHHH-HHHHHHHHH--HhHHHHHHHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 333443 456777755 57999999999999842 32 34556668999999999999988887777653
No 40
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.79 E-value=1.5e-15 Score=159.49 Aligned_cols=449 Identities=17% Similarity=0.245 Sum_probs=265.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHH
Q 002477 50 ERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRAL 129 (917)
Q Consensus 50 eral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL 129 (917)
..-++.+|.+.-.|..++++.. +++.+++.+.+|++.+.-+|-++.+|..|+.-.+..+++.....+|.|||
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~--------tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLE--------TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHh--------hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 3447899999999999999984 78889999999999999999999999999999888899999999999999
Q ss_pred HhCCCCCchHHHHHHHHHHHHcCCChH-hHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCC
Q 002477 130 CALPVTQHDRIWEIYLRFVEQEGIPIE-TSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGK 208 (917)
Q Consensus 130 ~~~P~~~~~~iw~~y~~~~~~~~~~~~-~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~ 208 (917)
...- +..+|.+|+.+..+.+..++ .++...-++ |+-+++-..| .+
T Consensus 104 ~k~l---~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a---------------------------yefv~~~~~~----e~ 149 (660)
T COG5107 104 KKSL---NLDLWMLYLEYIRRVNNLITGQKRFKIYEA---------------------------YEFVLGCAIF----EP 149 (660)
T ss_pred hhhc---cHhHHHHHHHHHHhhCcccccchhhhhHHH---------------------------HHHHHhcccc----cc
Confidence 8654 58899999999987764311 111111111 1111110001 12
Q ss_pred CchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHH
Q 002477 209 TKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVI 288 (917)
Q Consensus 209 ~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i 288 (917)
.....|.++..+++.-+. ++.+ ..+.++++.|..|.+++.+. ......+
T Consensus 150 ~s~~~W~ey~~fle~~~~----------------------------~~kw-EeQqrid~iR~~Y~ral~tP--~~nlekl 198 (660)
T COG5107 150 QSENYWDEYGLFLEYIEE----------------------------LGKW-EEQQRIDKIRNGYMRALQTP--MGNLEKL 198 (660)
T ss_pred cccchHHHHHHHHHhccc----------------------------cccH-HHHHHHHHHHHHHHHHHcCc--cccHHHH
Confidence 223369999888874332 1222 25678899999999999854 3345789
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhh
Q 002477 289 FDSYSQFEEIMVSAKMAK-PDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMN 367 (917)
Q Consensus 289 ~~~y~~fe~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~ 367 (917)
|.-|.+||..+....-.. ++ +.......+.+++.++..
T Consensus 199 W~dy~~fE~e~N~~TarKfvg-----------------------------------------e~sp~ym~ar~~yqe~~n 237 (660)
T COG5107 199 WKDYENFELELNKITARKFVG-----------------------------------------ETSPIYMSARQRYQEIQN 237 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------------------------------------ccCHHHHHHHHHHHHHHH
Confidence 999999998754432111 11 000011111122221100
Q ss_pred hchhhhhhhHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcC-----C-H-H
Q 002477 368 RRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-----D-I-A 440 (917)
Q Consensus 368 ~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g-----~-~-~ 440 (917)
+.+. +-..+|.+ ..++.++-++ +-.-|+.+.++....| + . .
T Consensus 238 ----lt~G-l~v~~~~~------------------~Rt~nK~~r~---------s~S~WlNwIkwE~en~l~L~~~~~~q 285 (660)
T COG5107 238 ----LTRG-LSVKNPIN------------------LRTANKAART---------SDSNWLNWIKWEMENGLKLGGRPHEQ 285 (660)
T ss_pred ----Hhcc-ccccCchh------------------hhhhcccccc---------ccchhhhHhhHhhcCCcccCCCcHHH
Confidence 0000 00112222 1233332221 2234888888877543 2 2 2
Q ss_pred HHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHH
Q 002477 441 NARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (917)
Q Consensus 441 ~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 520 (917)
.---+|++++.--|-.+ .+|+.+....+..++-++|+...++++...| .+...
T Consensus 286 Ri~y~~~q~~~y~~~~~----evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----------------------sL~~~ 338 (660)
T COG5107 286 RIHYIHNQILDYFYYAE----EVWFDYSEYLIGISDKQKALKTVERGIEMSP-----------------------SLTMF 338 (660)
T ss_pred HHHHHHHHHHHHhhhhH----HHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----------------------chhee
Confidence 33446788887777777 9999999999999999999999999887755 46667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002477 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE-----HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (917)
Q Consensus 521 ~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~-----~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~ 595 (917)
|...++...+-+....+|++++.- ..-.|.+...+ .|+++...+..-+-+. ...-+|=.++...
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~-----k~t~v~C~~~N~v 407 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQD------LKRKYSMGESESASKVDNNFEYSKELLLKRIN-----KLTFVFCVHLNYV 407 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHH------HHHHHhhhhhhhhccccCCccccHHHHHHHHh-----hhhhHHHHHHHHH
Confidence 888888888888888888887752 11222221111 1233222222211111 1223454454433
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhc
Q 002477 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED-YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIF 674 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~-~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~ 674 (917)
.. . .-++.||.+|-+|-+.--- ...+|+..|.+|.. +|+..-|-.+|+-++..+|+++.. -..|+.+....+
T Consensus 408 ~r-~--~Gl~aaR~~F~k~rk~~~~--~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y--~~kyl~fLi~in 480 (660)
T COG5107 408 LR-K--RGLEAARKLFIKLRKEGIV--GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLY--KEKYLLFLIRIN 480 (660)
T ss_pred HH-H--hhHHHHHHHHHHHhccCCC--CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHH--HHHHHHHHHHhC
Confidence 32 1 2277888888887544212 23455555555443 667777777777777766664321 112222223334
Q ss_pred CcchHHHHHHHHHHh
Q 002477 675 GVPKTREIYEQAIES 689 (917)
Q Consensus 675 ~~~~ar~~ye~al~~ 689 (917)
+-+.||.+|+.+++.
T Consensus 481 de~naraLFetsv~r 495 (660)
T COG5107 481 DEENARALFETSVER 495 (660)
T ss_pred cHHHHHHHHHHhHHH
Confidence 444444444444443
No 41
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.77 E-value=1.4e-14 Score=159.91 Aligned_cols=452 Identities=16% Similarity=0.225 Sum_probs=284.8
Q ss_pred hHHHHHHhhCCCChHHHHHHHHHH-HhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 002477 14 LLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (917)
Q Consensus 14 ~~~E~~l~~~P~~~~~W~~yi~~~-~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~e 92 (917)
..|-+.+..+--+...|...|..- .......++.+|..+|..+|..+..|..|+.++. ..+..+.+..+|+
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~--------klg~~~~s~~Vfe 103 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY--------KLGNAENSVKVFE 103 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH--------HhhhHHHHHHHHH
Confidence 333444444444444443333321 1223366788999999999999999999999984 6678899999999
Q ss_pred HHHHhcCCChHHHHHHHHHHhhc-ccHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCC
Q 002477 93 RALVTMHKMPRIWIMYLETLTSQ-KFITKARRTFDRALCALPVT-QHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDP 170 (917)
Q Consensus 93 raL~~~p~~~~lw~~y~~~~~~~-~~~~~ar~~~~rAL~~~P~~-~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P 170 (917)
|++...|.+..+|+.|+.|+... ++-+..|+.|++|+...+.+ .++++|..|++|...++.. .....+|+|.|. .|
T Consensus 104 rgv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~-k~v~~iyeRile-iP 181 (577)
T KOG1258|consen 104 RGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW-KRVANIYERILE-IP 181 (577)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH-HHHHHHHHHHHh-hh
Confidence 99999999999999999999863 46778999999999999965 5789999999999888877 889999999999 46
Q ss_pred CCH-HHHH----HHHHh-----cccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhh
Q 002477 171 SHI-EDFI----EFLVK-----SKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240 (917)
Q Consensus 171 ~~~-~~~i----~~l~~-----~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (917)
.+. ..|. +++-. .-..+++..+-..+.+.. ..+....+.+-|...+....
T Consensus 182 ~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~--~~~~~~~~~e~~~~~v~~~~------------------ 241 (577)
T KOG1258|consen 182 LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS--KITHSQEPLEELEIGVKDST------------------ 241 (577)
T ss_pred hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh--hcccccChhHHHHHHHhhcc------------------
Confidence 642 1111 11111 111222221111111100 00000001111111111000
Q ss_pred hhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccc
Q 002477 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (917)
Q Consensus 241 i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~ 320 (917)
+ ..+.++.+.....+.+..- -.+|..+.+.++..
T Consensus 242 -----~--------------~s~~l~~~~~~l~~~~~~~------~~~~~~s~~~~~kr--------------------- 275 (577)
T KOG1258|consen 242 -----D--------------PSKSLTEEKTILKRIVSIH------EKVYQKSEEEEEKR--------------------- 275 (577)
T ss_pred -----C--------------ccchhhHHHHHHHHHHHHH------HHHHHhhHhHHHHH---------------------
Confidence 0 0111222222222221110 11222222222111
Q ss_pred CCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc--CC
Q 002477 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GN 398 (917)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~--~~ 398 (917)
..+|..+ +||-.--+ -.++.+...|..++.... |+
T Consensus 276 ---------------------------------------~~fE~~I-krpYfhvk---pl~~aql~nw~~yLdf~i~~g~ 312 (577)
T KOG1258|consen 276 ---------------------------------------WGFEEGI-KRPYFHVK---PLDQAQLKNWRYYLDFEITLGD 312 (577)
T ss_pred ---------------------------------------Hhhhhhc-cccccccC---cccHHHHHHHHHHhhhhhhccc
Confidence 0111111 11110000 012233456777776664 67
Q ss_pred chHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCChhhhHHHHHHHHHHHHhcCCH
Q 002477 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNF 477 (917)
Q Consensus 399 ~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~-~~~~~~l~~~w~~~a~~e~~~~~~ 477 (917)
...+.-.|++++-+ +..+...|..|+.+.+..|+.+-|..++.++.+.. +..+ .+.+.++.++..+||+
T Consensus 313 ~~~~~~l~ercli~------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~----~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 313 FSRVFILFERCLIP------CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP----IIHLLEARFEESNGNF 382 (577)
T ss_pred HHHHHHHHHHHHhH------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc----HHHHHHHHHHHhhccH
Confidence 78888899998854 44678999999999999999999999999999865 5556 8999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhccCC---CHHH
Q 002477 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR---AVYERILDLRIA---TPQI 551 (917)
Q Consensus 478 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~---~~y~~al~~~p~---~~~~ 551 (917)
..|+.+|++..+.-| ....+-..++.++...|..+.+. .+|....+-.-+ .+..
T Consensus 383 ~~A~~~lq~i~~e~p--------------------g~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 383 DDAKVILQRIESEYP--------------------GLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred HHHHHHHHHHHhhCC--------------------chhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 999999999985434 24566677888999999999988 455544443222 2456
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 552 IINYALLLE-EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 552 ~~~~a~~~~-~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
+.+++.+.. -.++.+.|..++..++.. .|.+..+|..++.....+-+..+.+-.-.++..++.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~ 506 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPSGREYDLLEPIDWKELK 506 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHh
Confidence 777887664 468999999999999997 899988898887644432223334444444444443
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.7e-18 Score=187.14 Aligned_cols=261 Identities=19% Similarity=0.259 Sum_probs=112.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCC-ChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002477 464 WCEWAEMELRHKNFKGALELMRRATAEP-SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (917)
Q Consensus 464 w~~~a~~e~~~~~~~~A~~~l~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al 542 (917)
.+.+|.++.+.|++++|++++++.+... + |.+..+|..++++....|+++.|+.+|++++
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~-------------------~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~ 71 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAP-------------------PDDPEYWRLLADLAWSLGDYDEAIEAYEKLL 71 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc-------------------ccccccccccccccccccccccccccccccc
Confidence 3477999999999999999997765432 1 2578999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCC
Q 002477 543 DLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA 622 (917)
Q Consensus 543 ~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~ 622 (917)
..++.++..+..++.+ ...+++++|..+++++.+.++ +...|..++..+. ..++++++.++++++....+...
T Consensus 72 ~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 72 ASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSALQLYY---RLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp --------------------------------------------------H-HH---HTT-HHHHHHHHHHHHH-T---T
T ss_pred cccccccccccccccc-ccccccccccccccccccccc---ccchhhHHHHHHH---HHhHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999 789999999999999988533 3445665655443 45789999999999886553333
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHH
Q 002477 623 VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK 702 (917)
Q Consensus 623 ~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~ 702 (917)
++.+|..+|.++.+.|+.++|+.+|+++++..|+++.+....+++. ...|+..+++.+++...+. .|.+. .+|..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l--i~~~~~~~~~~~l~~~~~~-~~~~~--~~~~~ 219 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL--IDMGDYDEAREALKRLLKA-APDDP--DLWDA 219 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH--HTSC--CHCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHCCChHHHHHHHHHHHHH-CcCHH--HHHHH
Confidence 7899999999999999999999999999999999777655444443 5778888899999998888 66665 57999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 703 YAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 703 ~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
+|..+..+|+.++|..+|++++.. +|. ++.+...+.+...+.|..+.|..+.+
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~-~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKL-NPD-DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHH-STT--HHHHHHHHHHHT-------------
T ss_pred HHHHhccccccccccccccccccc-ccc-cccccccccccccccccccccccccc
Confidence 999999999999999999999998 887 89999999999999999999998884
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1e-12 Score=150.13 Aligned_cols=599 Identities=14% Similarity=0.144 Sum_probs=340.0
Q ss_pred chHHHHHHhhCCCChHHHHHHHH-HHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 002477 13 DLLYEEELLRNPFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTF 91 (917)
Q Consensus 13 ~~~~E~~l~~~P~~~~~W~~yi~-~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~ 91 (917)
--.+.+.|.++|.+..+|.-... +++.++..+.....--|--.+|.+.++|........ ..+.+..|+-+|
T Consensus 159 ~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~--------~~~~i~qA~~cy 230 (895)
T KOG2076|consen 159 EEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE--------QLGNINQARYCY 230 (895)
T ss_pred HHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--------hcccHHHHHHHH
Confidence 34678899999999999999977 566667777766666777889999999999988874 677899999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC----chHHHHHHHHHHHHcCCChHhHHHHHHHHHc
Q 002477 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ----HDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167 (917)
Q Consensus 92 eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~----~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~ 167 (917)
.||++..|.+..+-..+..++.++|+...|..+|.+.++.+|... +..||...-.| ...+.. +.|...+..+++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~-~~~~~~-e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF-ITHNER-ERAAKALEGALS 308 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH-HHhhHH-HHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999221 23344433333 334444 788999999988
Q ss_pred cCCC-----CHHHHHHHHHhcccHHHHHHHHHHHhcCC----c---------------cccccCCCc--hHH-HHHHHHH
Q 002477 168 YDPS-----HIEDFIEFLVKSKLWQEAAERLASVLNDD----Q---------------FYSIKGKTK--HRL-WLELCDL 220 (917)
Q Consensus 168 ~~P~-----~~~~~i~~l~~~~~~~~A~~~l~~~l~~~----~---------------~~~~~~~~~--~~l-w~~~~~~ 220 (917)
.+.+ +.+.+++.++....++.|........+.. . +.......+ ..+ .+.+|-+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 4432 35667788999999999988877666510 0 000000111 111 1111111
Q ss_pred HhccccccccccHHHHHHhhhhcc--cchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHH
Q 002477 221 LTTHATEISGLNVDAIIRGGIRKF--TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEI 298 (917)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~i~~~--~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~ 298 (917)
-. +.. ..++.++.-.+..- |...+.+++.+++.|+..|++..|..+|-.++...+... .-+|--.+.....
T Consensus 389 ~L---~~~--e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 389 HL---KER--ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYME 461 (895)
T ss_pred cc---ccc--chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHH
Confidence 11 110 11233333333322 555678999999999999999999999999888654433 2233333322221
Q ss_pred HHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHH
Q 002477 299 MVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLL 378 (917)
Q Consensus 299 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L 378 (917)
+ +..+.++..++. +|
T Consensus 462 l-----------------------------------------------------~e~e~A~e~y~k------------vl 476 (895)
T KOG2076|consen 462 L-----------------------------------------------------GEYEEAIEFYEK------------VL 476 (895)
T ss_pred H-----------------------------------------------------hhHHHHHHHHHH------------HH
Confidence 1 013334445554 56
Q ss_pred hhCCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCC----ccCCCcHHHHHHHHHHHHhcCCHHHH----HHHHHH
Q 002477 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM----KAVGKPHTLWVAFAKLYETYKDIANA----RVIFDK 448 (917)
Q Consensus 379 ~~nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~----~~~~~~~~lw~~~a~~~~~~g~~~~A----~~i~e~ 448 (917)
..+|.+.+.-..++.++. |++++|.++.++.+ ..|+. .+......+-..++..+.+.|+.++= ......
T Consensus 477 ~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~-~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 477 ILAPDNLDARITLASLYQQLGNHEKALETLEQII-NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc-CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 668888888888888775 67778888777654 22321 12223344556666666666665432 221111
Q ss_pred HHhccCC----------------------------------------------------------ChhhhHHHHHHHHHH
Q 002477 449 AVQVNYK----------------------------------------------------------TVDHLASIWCEWAEM 470 (917)
Q Consensus 449 al~~~~~----------------------------------------------------------~~~~l~~~w~~~a~~ 470 (917)
.+++-.. +.++.-.+...++..
T Consensus 556 ~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~ 635 (895)
T KOG2076|consen 556 FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILS 635 (895)
T ss_pred HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 1111000 001111233344445
Q ss_pred HHhcCCHHHHHHHHHHHHcCCC----hhHHHhhh--------hcCCc--------hhhh-----hhhccHHHHHHHHHHH
Q 002477 471 ELRHKNFKGALELMRRATAEPS----VEVRRRVA--------ADGNE--------PVQM-----KLHKSLRLWTFYVDLE 525 (917)
Q Consensus 471 e~~~~~~~~A~~~l~~al~~~~----~~~~~~~~--------~~~~~--------~~~~-----~~~~~~~~w~~~~~l~ 525 (917)
..+.+.+++|..+...|+..+. ..+..... ..+.. .+-+ ..+....+|+.+.++.
T Consensus 636 L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~ 715 (895)
T KOG2076|consen 636 LAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYF 715 (895)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 5677788888888888776532 01000000 00000 0000 1223344555444444
Q ss_pred HHcCCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCCh
Q 002477 526 ESLGNLESTRAVYERILDLRIAT-PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKL 604 (917)
Q Consensus 526 ~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~ 604 (917)
.+.|+-..-...+.+++..+|.+ |...+-+|.+...++.+..|+..|-++... .|+++-+=...+..|..+..+...
T Consensus 716 ~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v 793 (895)
T KOG2076|consen 716 SKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRV 793 (895)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44444333444444444444444 555566666666666666666666666664 455432222111112211111111
Q ss_pred H-------HHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcc
Q 002477 605 E-------RARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP 677 (917)
Q Consensus 605 e-------~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~ 677 (917)
. ++.....+-.+.-......+++++.|+.+...|...-|...|++++...|.+.....
T Consensus 794 ~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~--------------- 858 (895)
T KOG2076|consen 794 SNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPK--------------- 858 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccccccc---------------
Confidence 1 111111111111111113456666666666666666666666666665554211000
Q ss_pred hHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 002477 678 KTREIYEQAIESGLPDKD-VKAMCLKYAELEKSLGEIDRARGIYVFAS 724 (917)
Q Consensus 678 ~ar~~ye~al~~~~p~~~-~~~~~l~~a~le~~~g~~~~Ar~i~~~a~ 724 (917)
.++.+ -..+..++.-++.+.|+..-|+.++++=+
T Consensus 859 -------------~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 859 -------------EDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred -------------CCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 01111 12445666677889999999999987643
No 44
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.74 E-value=3.8e-16 Score=183.06 Aligned_cols=250 Identities=21% Similarity=0.408 Sum_probs=205.4
Q ss_pred HHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CChhHHHhhhhcCCchhhhhhhccHHHHHH
Q 002477 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (917)
Q Consensus 442 A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 520 (917)
...-|++.+..+|++. -+|+.|..+.++.+..++|+++.++|+.. +. |. -..-..+|..
T Consensus 1443 saeDferlvrssPNSS----i~WI~YMaf~LelsEiekAR~iaerAL~tIN~-----RE-----------eeEKLNiWiA 1502 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSS----ILWIRYMAFHLELSEIEKARKIAERALKTINF-----RE-----------EEEKLNIWIA 1502 (1710)
T ss_pred CHHHHHHHHhcCCCcc----hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc-----ch-----------hHHHHHHHHH
Confidence 3556888888899988 99999999999999999999999999954 33 10 0124789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhC
Q 002477 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600 (917)
Q Consensus 521 ~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~ 600 (917)
|.+++...|+-+...++|+||.+.+ +.-.++..+..+|...+.+++|.++|++.++.|+ +...+|..|++.++ .
T Consensus 1503 ~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl---~ 1576 (1710)
T KOG1070|consen 1503 YLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLL---R 1576 (1710)
T ss_pred HHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHh---c
Confidence 9999999999999999999999863 2346889999999999999999999999999875 67789999998777 4
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHH
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTR 680 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar 680 (917)
+++-+.|+.++.+|++..|...+..+...+|+++.++|+.++++.+|+-.+...|. +.
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK--Rt-------------------- 1634 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK--RT-------------------- 1634 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc--ch--------------------
Confidence 56679999999999999999778899999999999999999999888877766665 22
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA-DPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (917)
Q Consensus 681 ~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~-~P~~~~~~w~~~~~fe~~~G~~~~a~~~l 756 (917)
++|+-|++++.++|+.+-+|.+|+|++.+. .|..-..|++.|.+||..||+.+++..+=
T Consensus 1635 -----------------DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1635 -----------------DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred -----------------hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 556666677777777777777888777763 44434578888888888888888776654
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.2e-17 Score=180.45 Aligned_cols=259 Identities=17% Similarity=0.233 Sum_probs=91.3
Q ss_pred HHHHHH--cCCchHHHHHHHHHHhcc-CCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHH
Q 002477 390 RRVKIF--EGNPTKQILTYTEAVRTV-DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCE 466 (917)
Q Consensus 390 ~~~~l~--~~~~~~a~~~y~~Ai~~i-~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~ 466 (917)
.++.++ .+++++|.+++.+++..+ +| .+...|..+|.+.+..++++.|+..|++++..++.++ ..+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~-----~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----~~~~~ 83 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPP-----DDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP----QDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc----ccccc
Confidence 334444 466777877776666554 33 4667788888888888888888888888887777766 66666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-
Q 002477 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR- 545 (917)
Q Consensus 467 ~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~- 545 (917)
++.+ ...+++++|..+++++...++ ++..|..++.++...|+++++..+++++....
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~---------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDG---------------------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred cccc-ccccccccccccccccccccc---------------------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 6666 677778888887777765443 45667777777777788888888887766554
Q ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcH
Q 002477 546 -IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVK 624 (917)
Q Consensus 546 -p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~ 624 (917)
+.++.+|..+|.++.+.|++++|...|++++++ +|++..++..++..++ ..|+.++++.+++......|. ++
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li---~~~~~~~~~~~l~~~~~~~~~--~~ 214 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI---DMGDYDEAREALKRLLKAAPD--DP 214 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH-HT--SC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHHHCcC--HH
Confidence 456777778888888888888888888888876 7777777776655444 556677777777777776666 45
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 002477 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (917)
Q Consensus 625 ~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~ 688 (917)
.+|..+|..+...|+.++|+.+|+++++.+|+++...+ .|.......|..++|..++.++++
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~--~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL--AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH--HHHHHHT-----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 57777777777777777777777777777776443322 233333455566666666665554
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.4e-13 Score=163.56 Aligned_cols=472 Identities=11% Similarity=0.047 Sum_probs=283.0
Q ss_pred CCCChHH-HHHHHHHHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCC
Q 002477 23 NPFSLKL-WWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKM 101 (917)
Q Consensus 23 ~P~~~~~-W~~yi~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~ 101 (917)
+|..+.. ...-|...+.+.+..+...|+++++..|.+......++.... ..++.+.|...+++++...|..
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~--------~~G~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG--------WAGRDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH--------HcCCcHHHHHHHHHhccCCCCC
Confidence 4555542 333344556778888999999999999998543336666553 4477889999999999444555
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHH--HH
Q 002477 102 PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI--EF 179 (917)
Q Consensus 102 ~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i--~~ 179 (917)
...-...+..+..+++++.|..+|+++++..|. ++.++...+......+.+ +.|+..++++++.+|.+..... ..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRG-GVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCH-HHHHHHHHHhcccCcchHHHHHHHHH
Confidence 555555577888889999999999999999994 577777666666667777 8999999999999998643322 22
Q ss_pred HHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHHH--HH
Q 002477 180 LVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSL--AD 257 (917)
Q Consensus 180 l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~l--a~ 257 (917)
+...++..+|+..|++++.. .+.+.+++.++...+...+-.. .+...++.-..-|.+. ...|+.. +.
T Consensus 179 ~~~~~~~~~AL~~~ekll~~-------~P~n~e~~~~~~~~l~~~~~~~---~a~~l~~~~p~~f~~~-~~~~l~~~~~a 247 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRL-------APTSEEVLKNHLEILQRNRIVE---PALRLAKENPNLVSAE-HYRQLERDAAA 247 (822)
T ss_pred HHhcchHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCcH---HHHHHHHhCccccCHH-HHHHHHHHHHH
Confidence 33456776799999999965 3566677788887777655321 2334444434334332 2233222 11
Q ss_pred HHHHhCcHHHHHHHHHHhhhcccc-hhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhH
Q 002477 258 YYIRRELFEKARDIFEEGMMTVVT-VRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSM 336 (917)
Q Consensus 258 ~y~~~g~~e~A~~~~e~al~~~~~-~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (917)
..++.+ .....+ ..-|..+=.+++.++.- +.... ..+
T Consensus 248 ~~vr~a------------~~~~~~~~~r~~~~d~ala~~~~l-----~~~~~---~~p---------------------- 285 (822)
T PRK14574 248 EQVRMA------------VLPTRSETERFDIADKALADYQNL-----LTRWG---KDP---------------------- 285 (822)
T ss_pred HHHhhc------------ccccccchhhHHHHHHHHHHHHHH-----Hhhcc---CCC----------------------
Confidence 122221 111000 00111111122222110 00000 000
Q ss_pred HHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHH-HcCCchHHHHHHHHHHhccCC
Q 002477 337 AEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKI-FEGNPTKQILTYTEAVRTVDP 415 (917)
Q Consensus 337 ~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l-~~~~~~~a~~~y~~Ai~~i~p 415 (917)
+......+ .++..+ +.+ ..+...+++..|+..-..-.|
T Consensus 286 --------------~~~~~~~~-~~~Drl--------------------------~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 286 --------------EAQADYQR-ARIDRL--------------------------GALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred --------------ccchHHHH-HHHHHH--------------------------HHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 00000000 111110 001 123455677777665433222
Q ss_pred CccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---ChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 416 MKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK---TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 416 ~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~---~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
-+.-+-...|..|...++.++|..+|..++...+. +++++ .....+.--++..+++++|..++++....+|
T Consensus 325 -----~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~-~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 325 -----MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL-LDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred -----CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 13345555677777777888888888877775421 11122 1112222223456678888888877775322
Q ss_pred h------hHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHH
Q 002477 493 V------EVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE 566 (917)
Q Consensus 493 ~------~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e 566 (917)
. ...+. ..|+-.......+..+...|++.+|.+.+++++..-|.++.+++.+|.++...|.+.
T Consensus 399 ~~~~~~~~~~~~-----------pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 399 YQVGVYGLPGKE-----------PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPR 467 (822)
T ss_pred cEEeccCCCCCC-----------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 0 00000 022334555666777778889999999999998888999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC
Q 002477 567 DAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (917)
Q Consensus 567 ~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~ 621 (917)
+|...++++..+ +|.+..+....+.... ..+++.+|..+....++..|.+
T Consensus 468 ~A~~~~k~a~~l--~P~~~~~~~~~~~~al---~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 468 KAEQELKAVESL--APRSLILERAQAETAM---ALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHhhh--CCccHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhCCCc
Confidence 999999888876 7777555444333333 5678899999999999988884
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-13 Score=144.37 Aligned_cols=307 Identities=15% Similarity=0.141 Sum_probs=226.9
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHH-HhcCC
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME-LRHKN 476 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e-~~~~~ 476 (917)
+.++++.-++..+...-| .+.-+-...|.+...+.|+++|..+|+..++.+|-..+++ ++ |.+.. .++.
T Consensus 242 q~~e~~~k~e~l~~~gf~-----~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dm-dl---ySN~LYv~~~- 311 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFP-----NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDM-DL---YSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHhccCC-----ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhH-HH---HhHHHHHHhh-
Confidence 445666666665543233 4556667777788889999999999999999999877554 22 33332 2222
Q ss_pred HHHHHHHH-HHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHH
Q 002477 477 FKGALELM-RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (917)
Q Consensus 477 ~~~A~~~l-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~ 555 (917)
- ..+..+ +.+..+.. -.+....--++.+.-.++.++|...|+++++++|....+|.-+
T Consensus 312 ~-skLs~LA~~v~~idK--------------------yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 312 K-SKLSYLAQNVSNIDK--------------------YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred h-HHHHHHHHHHHHhcc--------------------CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh
Confidence 1 222222 33333322 1233444456666777889999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHH
Q 002477 556 ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635 (917)
Q Consensus 556 a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~ 635 (917)
|.=+.+.++...|+..|.+||.+ +|.+...|...+..+. -.+...=|.-.|.+|+..-|. +..+|..+|++++
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYe---im~Mh~YaLyYfqkA~~~kPn--DsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYE---IMKMHFYALYYFQKALELKPN--DSRLWVALGECYE 443 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHH---HhcchHHHHHHHHHHHhcCCC--chHHHHHHHHHHH
Confidence 99999999999999999999998 9999999987665433 234578899999999999999 7899999999999
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh----CCCCchHHHHHHHHHHHHHHcC
Q 002477 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES----GLPDKDVKAMCLKYAELEKSLG 711 (917)
Q Consensus 636 ~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~----~~p~~~~~~~~l~~a~le~~~g 711 (917)
+.++.++|++.|.+++.....+...... ....+.+.++.++|-..|+++|+. |.-++.....++-+|..+.+.+
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~--LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~ 521 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVR--LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK 521 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Confidence 9999999999999999876554333222 333346789999999999999985 2234444567777899999999
Q ss_pred ChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhh
Q 002477 712 EIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVS 763 (917)
Q Consensus 712 ~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~ 763 (917)
++++|-.+-..++.. ++ ..++++.++|-.|..+
T Consensus 522 ~~~~As~Ya~~~~~~-~~------------------e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 522 DFDEASYYATLVLKG-ET------------------ECEEAKALLREIRKIQ 554 (559)
T ss_pred chHHHHHHHHHHhcC-Cc------------------hHHHHHHHHHHHHHhc
Confidence 999999888888754 33 2367777777555444
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.9e-16 Score=171.01 Aligned_cols=289 Identities=15% Similarity=0.198 Sum_probs=234.6
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCH
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~ 477 (917)
+..+|+..|.+ +....+ +.+-+...+|+.|...+++++|+.+|+.+-+..|-.+++. +++. ...... +-
T Consensus 334 ~~~~A~~~~~k-lp~h~~-----nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m-eiyS---T~LWHL-q~ 402 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHY-----NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM-EIYS---TTLWHL-QD 402 (638)
T ss_pred HHHHHHHHHHh-hHHhcC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch-hHHH---HHHHHH-Hh
Confidence 34567777777 433222 2334446788889999999999999999988888766443 2221 111111 22
Q ss_pred HHHHHHHHHH-HcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 002477 478 KGALELMRRA-TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (917)
Q Consensus 478 ~~A~~~l~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a 556 (917)
+-++..+-+- +...| .++..|...++++.-+++.+.|++.|+|++.++|...-+|..+|
T Consensus 403 ~v~Ls~Laq~Li~~~~--------------------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlG 462 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDP--------------------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLG 462 (638)
T ss_pred hHHHHHHHHHHHhhCC--------------------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcC
Confidence 3444444443 34433 68999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHH
Q 002477 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (917)
Q Consensus 557 ~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~ 636 (917)
.=+..+..++.|...|..|+.. +|.++.+|...+..+. ++++++.|.--|++|++.+|. +..+...+|.++.+
T Consensus 463 hE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~---Kqek~e~Ae~~fqkA~~INP~--nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 463 HESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYL---KQEKLEFAEFHFQKAVEINPS--NSVILCHIGRIQHQ 535 (638)
T ss_pred ChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhhee---ccchhhHHHHHHHhhhcCCcc--chhHHhhhhHHHHH
Confidence 9888899999999999999997 9999999976554333 678999999999999999999 78899999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHH
Q 002477 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRA 716 (917)
Q Consensus 637 ~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~A 716 (917)
.|..++|+.+|++|+..+|.++--....+-+. ...+++++|...+|+.-+. -|+.. .++...|.++.++|..+.|
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il--~~~~~~~eal~~LEeLk~~-vP~es--~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASIL--FSLGRYVEALQELEELKEL-VPQES--SVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH--HhhcchHHHHHHHHHHHHh-CcchH--HHHHHHHHHHHHHccchHH
Confidence 99999999999999999999876666666655 4678999999999999998 89887 5688899999999999999
Q ss_pred HHHHHHHHccCCCC
Q 002477 717 RGIYVFASQFADPR 730 (917)
Q Consensus 717 r~i~~~a~~~~~P~ 730 (917)
..-|.=|..+ ||.
T Consensus 611 l~~f~~A~~l-dpk 623 (638)
T KOG1126|consen 611 LLHFSWALDL-DPK 623 (638)
T ss_pred HHhhHHHhcC-CCc
Confidence 9999999998 776
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=3.5e-13 Score=162.15 Aligned_cols=459 Identities=12% Similarity=0.045 Sum_probs=295.8
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~ 159 (917)
..+++..|...|+++|...|+++.....++.++...|+.+.|+..+++++ .|.+.+...-...+......|.+ +.|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdy-d~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRW-DQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCH-HHHH
Confidence 67889999999999999999995333399998889999999999999999 55333444444446677778888 9999
Q ss_pred HHHHHHHccCCCCHHHHH---HHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHH
Q 002477 160 RVYRRYLKYDPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAI 236 (917)
Q Consensus 160 ~~~~r~l~~~P~~~~~~i---~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~ 236 (917)
.+|+++++.+|++.+.+. ..+...++.++|...+.+++..+ + ... ..+.+..+....... ..+...
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p---~~~-~~l~layL~~~~~~~---~~AL~~ 191 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD----P---TVQ-NYMTLSYLNRATDRN---YDALQA 191 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----c---chH-HHHHHHHHHHhcchH---HHHHHH
Confidence 999999999999965554 35577899999999999998642 1 111 122233333221111 135677
Q ss_pred HHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 002477 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEED 316 (917)
Q Consensus 237 l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~ 316 (917)
+++.+..+|++ .+++..+.....+.|-...|.+...+--.-. +..+. ..+|...+...+..... ...
T Consensus 192 ~ekll~~~P~n-~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~-------~~l~~~~~a~~vr~a~~--~~~-- 258 (822)
T PRK14574 192 SSEAVRLAPTS-EEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHY-------RQLERDAAAEQVRMAVL--PTR-- 258 (822)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHH-------HHHHHHHHHHHHhhccc--ccc--
Confidence 88888988887 5778888888888888888876655533211 11111 11222211111110000 000
Q ss_pred ccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc
Q 002477 317 DEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE 396 (917)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~ 396 (917)
.+. +....++..++.++.++.+-+ ..|...
T Consensus 259 --------~~~----------------------~r~~~~d~ala~~~~l~~~~~---------~~p~~~----------- 288 (822)
T PRK14574 259 --------SET----------------------ERFDIADKALADYQNLLTRWG---------KDPEAQ----------- 288 (822)
T ss_pred --------cch----------------------hhHHHHHHHHHHHHHHHhhcc---------CCCccc-----------
Confidence 000 111235556666665432111 122211
Q ss_pred CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCC
Q 002477 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (917)
Q Consensus 397 ~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~ 476 (917)
..|.++ .....-.....|++.+++..|+........-|. -+-...|..++..++
T Consensus 289 -------~~~~~~----------------~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~---y~~~a~adayl~~~~ 342 (822)
T PRK14574 289 -------ADYQRA----------------RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD---YARRWAASAYIDRRL 342 (822)
T ss_pred -------hHHHHH----------------HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH---HHHHHHHHHHHhcCC
Confidence 112221 122223445678999999999998854422210 445557888999999
Q ss_pred HHHHHHHHHHHHcCCC------hhH---HHhhh--hc-CCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh
Q 002477 477 FKGALELMRRATAEPS------VEV---RRRVA--AD-GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI-LD 543 (917)
Q Consensus 477 ~~~A~~~l~~al~~~~------~~~---~~~~~--~~-~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a-l~ 543 (917)
+++|..+|++++...+ ..+ ....+ .+ +... ..-....++.... . --+..|..- -.
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~---------~A~~~l~~~~~~~--p-~~~~~~~~~~~~ 410 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD---------KAYQFAVNYSEQT--P-YQVGVYGLPGKE 410 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH---------HHHHHHHHHHhcC--C-cEEeccCCCCCC
Confidence 9999999999986431 111 11222 11 1111 0000011111100 0 000011100 11
Q ss_pred ccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc
Q 002477 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV 623 (917)
Q Consensus 544 ~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~ 623 (917)
-+|+..+.....+..+.-.|+..+|.+.++..+.. .|.+..++..+..... ..|.+.+|+..++.++...|. +
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~---~Rg~p~~A~~~~k~a~~l~P~--~ 483 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYL---ARDLPRKAEQELKAVESLAPR--S 483 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhhCCc--c
Confidence 24555678888999999999999999999999986 8999999998776544 567899999999999999999 7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 624 ~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
..+....+......|++.+|..+.+..++..|++...
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8999999999999999999999999999999998754
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.6e-15 Score=163.86 Aligned_cols=220 Identities=15% Similarity=0.245 Sum_probs=191.7
Q ss_pred HHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHH
Q 002477 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (917)
Q Consensus 403 ~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~ 482 (917)
...+.+-+-..+| ..+..|+.+|.+|.-+++.+.|++.|++|++++|... -.|..++-=......+|.|..
T Consensus 406 Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 406 LSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhhHHHHhHHH
Confidence 3444444445567 6889999999999999999999999999999999877 777777766677788999999
Q ss_pred HHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHc
Q 002477 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH 562 (917)
Q Consensus 483 ~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~ 562 (917)
.|+.|+.+.| ....+|+.++-++.++++++.|.--|++|++.+|.+..+...++.++.+.
T Consensus 477 ~fr~Al~~~~--------------------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 477 SFRKALGVDP--------------------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred HHHhhhcCCc--------------------hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 9999999976 57899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhhccCCCChHH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHH
Q 002477 563 KYFEDAFRVYERGVKIFKYPHVKD-IWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641 (917)
Q Consensus 563 g~~e~A~~~~eral~~f~~P~~~~-lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~ 641 (917)
|+.++|+.+|++|+.+ +|.+.- .+.. +..+ +..+++++|...+|..-+..|+ ...++..+|+.+.+.|..+
T Consensus 537 k~~d~AL~~~~~A~~l--d~kn~l~~~~~-~~il---~~~~~~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHL--DPKNPLCKYHR-ASIL---FSLGRYVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhhhHHHHHHHHHHhc--CCCCchhHHHH-HHHH---HhhcchHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccch
Confidence 9999999999999998 787742 2222 2222 2567899999999999999999 6889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCh
Q 002477 642 RAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 642 ~A~~~y~~al~~~p~~~~ 659 (917)
.|+.-|-=|...+|....
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 999999999999998544
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=7.1e-14 Score=159.04 Aligned_cols=294 Identities=11% Similarity=0.002 Sum_probs=232.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhh
Q 002477 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (917)
Q Consensus 430 a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 509 (917)
|......|+++.|+..+.++.+..|... ..+...|+...+.|+++.|...|.++++..|
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p----------------- 149 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQRGDEARANQHLEEAAELAG----------------- 149 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------
Confidence 3455668999999999999998877655 6677788999999999999999999987644
Q ss_pred hhhcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc-CCCChHHH
Q 002477 510 KLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF-KYPHVKDI 587 (917)
Q Consensus 510 ~~~~~-~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f-~~P~~~~l 587 (917)
.+ ..+...++.+....|+++.|...++++++..|.++.++..++.++...|+++.|.+.+++..+.- ..|.....
T Consensus 150 ---~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 150 ---NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred ---cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 12 24566678999999999999999999999999999999999999999999999999999999751 12222211
Q ss_pred H--HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHH--
Q 002477 588 W--VTYLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG-- 661 (917)
Q Consensus 588 w--~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~--~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~-- 661 (917)
. ..+...+ ..+..+.+.+.+.++.+..|.. .+..++..++..+...|+.++|..+++++++..|++....
T Consensus 227 l~~~a~~~~l----~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 227 LEQKAEIGLL----DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHH----HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 1 1111111 1122344566888888888843 3689999999999999999999999999999999987543
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHH--HHccCCCCCCHHHHHHH
Q 002477 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVF--ASQFADPRSDTEFWNRW 739 (917)
Q Consensus 662 l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~--a~~~~~P~~~~~~w~~~ 739 (917)
....++. ...++...++..++++++. .|++....+...+|.++.+.|++++|+..|++ +++. +|+ + ..+..+
T Consensus 303 ~l~~~~~--l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~-~-~~~~~L 376 (409)
T TIGR00540 303 LCLPIPR--LKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLD-A-NDLAMA 376 (409)
T ss_pred HHHHhhh--cCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCC-H-HHHHHH
Confidence 3333333 2346778899999999999 88876324577899999999999999999994 6655 675 3 345699
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 002477 740 HEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 740 ~~fe~~~G~~~~a~~~lr 757 (917)
.....+.|+.++|+++++
T Consensus 377 a~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 999999999999999996
No 52
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.67 E-value=2.1e-14 Score=168.72 Aligned_cols=251 Identities=17% Similarity=0.262 Sum_probs=195.5
Q ss_pred HHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccCCChhhhHHHHHHHHHHHHhcCCHHHHHH
Q 002477 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (917)
Q Consensus 404 ~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~-~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~ 482 (917)
+-|++.+.. +| ++.-+|+.|..+..+.++++.||+++++||. ++|+--++...+|..|.+++...|.-+...+
T Consensus 1445 eDferlvrs-sP-----NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1445 EDFERLVRS-SP-----NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred HHHHHHHhc-CC-----CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 456666654 55 6778899999999999999999999999987 5677667777899999999988888888899
Q ss_pred HHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHc
Q 002477 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH 562 (917)
Q Consensus 483 ~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~ 562 (917)
+|+||++... ...++..+..+|...+.++.|.++|+.+++..-+.+.+|+.|+.++.++
T Consensus 1519 VFeRAcqycd---------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1519 VFERACQYCD---------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHHhcc---------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 9999987643 4678888888999999999999999999988778888999999999999
Q ss_pred cCHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH
Q 002477 563 KYFEDAFRVYERGVKIFKYPH--VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (917)
Q Consensus 563 g~~e~A~~~~eral~~f~~P~--~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~ 640 (917)
+.-+.|..++.||+.. -|. +.++...++. + .+..|+.+|+|.+|+-.+...|. -..+|.-|+..+.++|+.
T Consensus 1578 ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq-L--EFk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKS--LPKQEHVEFISKFAQ-L--EFKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred cHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH-H--HhhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCH
Confidence 9999999999999986 454 4454444432 2 23567889999999999999988 578999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 002477 641 KRAMKVYDQATKAVPNHEK-LGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (917)
Q Consensus 641 ~~A~~~y~~al~~~p~~~~-~~l~~~~i~~~~~~~~~~~ar~~ye~al~ 688 (917)
+.++.+|+|++.+.-.-.+ -.+|..|+.+..+.|+-..+..+=.+|++
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999999886533222 24666777765555555444444444444
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=7.2e-13 Score=150.05 Aligned_cols=223 Identities=11% Similarity=0.067 Sum_probs=100.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCC-CChHH-HH-HHHHHHHHHH
Q 002477 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY-PHVKD-IW-VTYLSKFVKR 598 (917)
Q Consensus 522 ~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~-P~~~~-lw-~~yl~~~~~~ 598 (917)
+.++...|+++.|...++++.+..|++|.+...++.++...|++++|..++.+..+.... |.... +- ..|...+...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555543111 11000 00 1121111111
Q ss_pred hCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcch
Q 002477 599 YGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK 678 (917)
Q Consensus 599 ~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ 678 (917)
....+.+....+.++.-...|+ ++.+...|+..+...|+.++|..+++++++..| ++.+.+ .|.. ...++.++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~--~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~--l~~~--l~~~~~~~ 312 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRH--QVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVL--LIPR--LKTNNPEQ 312 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHH--HHhh--ccCCChHH
Confidence 0111112222222222122222 345555555555555555555555555555322 222211 1111 12245555
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 679 ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
+....++.++. .|++. .+.+.+|.+....|++++|+..|+++++. .|+ ...+..+...+.+.|+.+.+.++++
T Consensus 313 al~~~e~~lk~-~P~~~--~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~--~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 313 LEKVLRQQIKQ-HGDTP--LLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPD--AYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHhh-CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555 55444 44555555555555555555555555554 443 2233445555555555555555553
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=8.8e-13 Score=150.09 Aligned_cols=296 Identities=11% Similarity=0.075 Sum_probs=227.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHH
Q 002477 389 HRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA 468 (917)
Q Consensus 389 ~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a 468 (917)
.....+.+|++..|.+...++.+. .| .+...+...|..+...|+++.|..+|.++++..|.+. ..+...++
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~-~~-----~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a 160 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADH-AA-----EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIART 160 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhc-CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHH
Confidence 345566678999999999888754 34 3556677788999999999999999999998877652 14666779
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 002477 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (917)
Q Consensus 469 ~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~ 548 (917)
.+.+..|+++.|+..+++.....| +++.++..++.++...|+++.|...+.+..+..+.+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P--------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAP--------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998755 578899999999999999999999999999886666
Q ss_pred HHHHHH----HHHHHHHccCHHHHHHHHHHHhhccCCC----ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 549 PQIIIN----YALLLEEHKYFEDAFRVYERGVKIFKYP----HVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 549 ~~~~~~----~a~~~~~~g~~e~A~~~~eral~~f~~P----~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
+..+.. ...-+...+..+.+...+.++... .| ++..++..++..+. ..|+.++|..+++++++..|+
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~~a~~l~---~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIALAEHLI---DCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHhhCCC
Confidence 554321 111112333444455577777764 45 57788888876555 567899999999999999998
Q ss_pred CCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHHHhcCcchHHHHHH--HHHHhCCCCc
Q 002477 621 DAVK--PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE--KLGMYEIYIARAAEIFGVPKTREIYE--QAIESGLPDK 694 (917)
Q Consensus 621 ~~~~--~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~--~~~l~~~~i~~~~~~~~~~~ar~~ye--~al~~~~p~~ 694 (917)
+... ..+..++.+ ..++...++..++++++..|+++ .+....+.+. ...+++++|+..|+ .+++. .|++
T Consensus 296 ~~~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~--~~~~~~~~A~~~le~a~a~~~-~p~~ 370 (409)
T TIGR00540 296 DRAISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL--MKHGEFIEAADAFKNVAACKE-QLDA 370 (409)
T ss_pred cccchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHcccHHHHHHHHHHhHHhhc-CCCH
Confidence 4221 133333333 35788999999999999999988 5544555555 57899999999999 57777 7766
Q ss_pred hHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 695 ~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
. .+..++.++.++|+.++|+.+|.+++..
T Consensus 371 ~---~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 371 N---DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred H---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 3669999999999999999999998765
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=1.6e-13 Score=162.09 Aligned_cols=261 Identities=14% Similarity=0.037 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchh
Q 002477 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR---------HKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (917)
Q Consensus 437 g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~---------~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 507 (917)
++++.|+..|+++++.+|.+. ..|..++.++.. .+++++|...+++++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--------------- 335 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--------------- 335 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC---------------
Confidence 457899999999999999988 788777776542 2348999999999999866
Q ss_pred hhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHH
Q 002477 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587 (917)
Q Consensus 508 ~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~l 587 (917)
.+..+|..++.++...|++++|...|+++++++|+++.++..+|.++...|++++|+..|++++.+ +|.+...
T Consensus 336 -----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 336 -----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred -----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 578999999999999999999999999999999999999999999999999999999999999998 7876544
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 002477 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (917)
Q Consensus 588 w~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i 667 (917)
+...+..+. ..+++++|...|++++...|+. .+..+..+|.++...|+.++|+..+.+.....|.+.... ...+
T Consensus 409 ~~~~~~~~~---~~g~~eeA~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~-~~l~- 482 (553)
T PRK12370 409 GITKLWITY---YHTGIDDAIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV-NLLY- 482 (553)
T ss_pred HHHHHHHHH---hccCHHHHHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH-HHHH-
Confidence 332222222 3467999999999999886432 577889999999999999999999999877777633222 1111
Q ss_pred HHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 002477 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHE 741 (917)
Q Consensus 668 ~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~ 741 (917)
..+...+ ++++..+++.++. .-.... ....++.++.-.|+-+.|.-+ .++.+. ...|..|..
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~-~~~~~~--~~~~~~~~~~~~g~~~~~~~~-~~~~~~------~~~~~~~~~ 544 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLES-EQRIDN--NPGLLPLVLVAHGEAIAEKMW-NKFKNE------DNIWFKRWK 544 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHH-hhHhhc--CchHHHHHHHHHhhhHHHHHH-HHhhcc------chHhhhhhh
Confidence 1112333 4788877776664 111111 011266677788888888877 666543 245655543
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.61 E-value=1.7e-13 Score=133.83 Aligned_cols=209 Identities=16% Similarity=0.168 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (917)
Q Consensus 459 ~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y 538 (917)
.-+.+.+.++--+++.|++..|...+++|++..| ++...|..++.++.+.|..+.|.+.|
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP--------------------s~~~a~~~~A~~Yq~~Ge~~~A~e~Y 92 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDP--------------------SYYLAHLVRAHYYQKLGENDLADESY 92 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHcCChhhHHHHH
Confidence 3457888888889999999999999999998866 58899999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 002477 539 ERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (917)
Q Consensus 539 ~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~ 618 (917)
++++.+.|++..+.+|||-|++.+|.+++|...|++++.....|.....|.+.+-... ..|+++.|+..|+++|+..
T Consensus 93 rkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal---~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 93 RKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL---KAGQFDQAEEYLKRALELD 169 (250)
T ss_pred HHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh---hcCCchhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999995334444566666543333 5688999999999999999
Q ss_pred CcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCch
Q 002477 619 PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (917)
Q Consensus 619 p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~ 695 (917)
|+ .+.....++..+...|++-.|+..+++-....+....... .-|..+...|+.+.+- -|+.-++...|.+.
T Consensus 170 p~--~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~--L~iriak~~gd~~~a~-~Y~~qL~r~fP~s~ 241 (250)
T COG3063 170 PQ--FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL--LGIRIAKRLGDRAAAQ-RYQAQLQRLFPYSE 241 (250)
T ss_pred cC--CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH--HHHHHHHHhccHHHHH-HHHHHHHHhCCCcH
Confidence 99 6788999999999999999999999998887774332222 2333334555554444 45555544267654
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.1e-12 Score=131.57 Aligned_cols=291 Identities=15% Similarity=0.159 Sum_probs=234.0
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccH
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (917)
.++.++|...|-..++.+|.+. ++.+.++.++.+.|..++|+++-+..+..|..... ...
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~----e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~----------------qr~ 107 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETF----EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE----------------QRL 107 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhh----HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH----------------HHH
Confidence 4577899999999999999988 99999999999999999999999988887762211 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~ 595 (917)
.+...++.=+...|-+|.|..+|...++..---+.+.-.+..+|....++++|+.+-++.+++-+.+...+|-..|....
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 34455666678889999999999999986444467888899999999999999999999999865666677777776655
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcC
Q 002477 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG 675 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~ 675 (917)
.......++++|+.++.+|++.+|. +...-+.+|+++...|++..|++.++++++.+|.--.. +.......+..+|+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~--cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e-vl~~L~~~Y~~lg~ 264 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKK--CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE-VLEMLYECYAQLGK 264 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCcc--ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCC
Confidence 5555667899999999999999999 89999999999999999999999999999999974332 33333344578899
Q ss_pred cchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002477 676 VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREM 755 (917)
Q Consensus 676 ~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~ 755 (917)
....+....++++. .++.. +-+.++.+.....-++.|..+..+-+.. .| +......++++.+..+++..+++-
T Consensus 265 ~~~~~~fL~~~~~~-~~g~~---~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~P--t~~gf~rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 265 PAEGLNFLRRAMET-NTGAD---AELMLADLIELQEGIDAAQAYLTRQLRR-KP--TMRGFHRLMDYHLADAEEGRAKES 337 (389)
T ss_pred HHHHHHHHHHHHHc-cCCcc---HHHHHHHHHHHhhChHHHHHHHHHHHhh-CC--cHHHHHHHHHhhhccccccchhhh
Confidence 99999999999998 77765 3566666666666688888888888877 77 456777888888877776555544
Q ss_pred H
Q 002477 756 L 756 (917)
Q Consensus 756 l 756 (917)
|
T Consensus 338 L 338 (389)
T COG2956 338 L 338 (389)
T ss_pred H
Confidence 4
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=4.5e-12 Score=133.31 Aligned_cols=441 Identities=14% Similarity=0.116 Sum_probs=285.1
Q ss_pred CchhHHHHHHHHHHHHH--hcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCC-CchHHHHH--HHHHHHHcCCC
Q 002477 80 THPEYETLNNTFERALV--TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVT-QHDRIWEI--YLRFVEQEGIP 154 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~--~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~-~~~~iw~~--y~~~~~~~~~~ 154 (917)
...-+.++.++|+-.+. .+|+...+-.......++++.+++|.+.|.-||...|.- ..-+|-.+ ..--..+.|.+
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 34457888889988775 468888888888888999999999999999999999942 22222111 00001234666
Q ss_pred hHhHHHHHHHHHccCCCCHHHHHH--HHHhcccHHHHHHHHHHHhcCCcc------ccccCCCchHHHHHHHH--HHhcc
Q 002477 155 IETSLRVYRRYLKYDPSHIEDFIE--FLVKSKLWQEAAERLASVLNDDQF------YSIKGKTKHRLWLELCD--LLTTH 224 (917)
Q Consensus 155 ~~~a~~~~~r~l~~~P~~~~~~i~--~l~~~~~~~~A~~~l~~~l~~~~~------~~~~~~~~~~lw~~~~~--~~~~~ 224 (917)
+.|+..|...++..|+....+-- .....|+-++..+.+.+++..+.+ .++.+...--+..+.+. .+.+.
T Consensus 293 -~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 293 -DDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred -hhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 89999999999999987544322 233567888888888888865433 33322222222222221 11110
Q ss_pred ccccccccHHHHHHhhhhcc-----cch-hhHHHH------------------HHHHHHHHhCcHHHHHHHHHHhhhccc
Q 002477 225 ATEISGLNVDAIIRGGIRKF-----TDE-VGRLWT------------------SLADYYIRRELFEKARDIFEEGMMTVV 280 (917)
Q Consensus 225 ~~~~~~~~~~~~l~~~i~~~-----~~~-~~~lw~------------------~la~~y~~~g~~e~A~~~~e~al~~~~ 280 (917)
.. -....+++.|-.+.+.. |+- .|--|| .-|.-|.++|+++.|..+++-.-....
T Consensus 372 ek-~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 372 EK-ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HH-hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 00 00111232222111100 110 011232 223344555666655554432111110
Q ss_pred chhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHH
Q 002477 281 TVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLA 360 (917)
Q Consensus 281 ~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 360 (917)
.....
T Consensus 451 k~~sa--------------------------------------------------------------------------- 455 (840)
T KOG2003|consen 451 KTASA--------------------------------------------------------------------------- 455 (840)
T ss_pred hhhHH---------------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCC
Q 002477 361 RLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD 438 (917)
Q Consensus 361 ~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~ 438 (917)
-.+| +....+.. .++..|...-..|+ .++- .+......-+..-..+|+
T Consensus 456 --------------------aa~n----l~~l~flqggk~~~~aqqyad~al-n~dr-----yn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 456 --------------------AANN----LCALRFLQGGKDFADAQQYADIAL-NIDR-----YNAAALTNKGNIAFANGD 505 (840)
T ss_pred --------------------Hhhh----hHHHHHHhcccchhHHHHHHHHHh-cccc-----cCHHHhhcCCceeeecCc
Confidence 0000 00011111 13334444444444 2222 233444445556667899
Q ss_pred HHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHH
Q 002477 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (917)
Q Consensus 439 ~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 518 (917)
++.|...|..+|.-+...+ ...+..+......|+.++|+..|-+...+ +-++..+.
T Consensus 506 ~dka~~~ykeal~ndasc~----ealfniglt~e~~~~ldeald~f~klh~i--------------------l~nn~evl 561 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCT----EALFNIGLTAEALGNLDEALDCFLKLHAI--------------------LLNNAEVL 561 (840)
T ss_pred HHHHHHHHHHHHcCchHHH----HHHHHhcccHHHhcCHHHHHHHHHHHHHH--------------------HHhhHHHH
Confidence 9999999999998877777 78888888888999999999999886554 22478889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH--HHHHHHHHHH
Q 002477 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD--IWVTYLSKFV 596 (917)
Q Consensus 519 ~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~--lw~~yl~~~~ 596 (917)
...+++++.+.+...|+++|-++..+-|++|.+...+|.+|.+.|+-..||+.+-..-+.| |.+.+ -|.. ..++
T Consensus 562 ~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf--p~nie~iewl~--ayyi 637 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLA--AYYI 637 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--CcchHHHHHHH--HHHH
Confidence 9999999999999999999999999999999999999999999999999999988888864 55533 3542 3333
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 597 KRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 597 ~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
...-.+++...|+++--..|+ ...-.++.+.+..+.|++.+|..+|+..-+.+|.+-.-
T Consensus 638 ---dtqf~ekai~y~ekaaliqp~--~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc 696 (840)
T KOG2003|consen 638 ---DTQFSEKAINYFEKAALIQPN--QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC 696 (840)
T ss_pred ---hhHHHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence 223379999999999888888 56666778888999999999999999999999985443
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=2.2e-12 Score=146.11 Aligned_cols=295 Identities=11% Similarity=0.034 Sum_probs=230.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHH
Q 002477 389 HRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLW-VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (917)
Q Consensus 389 ~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw-~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~ 467 (917)
.....+.+|++.+|.+...++-.. .+.+.+. ...+......|+++.|...|.++.+.+|++. .......
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~-------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~~~~l~~ 159 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADH-------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ---LPVEITR 159 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---HHHHHHH
Confidence 455556678999888777665432 1234444 4446666899999999999999999888763 1333455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 002477 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (917)
Q Consensus 468 a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~ 547 (917)
+++.+..|+++.|+..+++.....| +++.+....+.++...|+++.|..++.++.+..+.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P--------------------~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAP--------------------RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--------------------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998865 58899999999999999999999999999998877
Q ss_pred CHHHHH--------HHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 002477 548 TPQIII--------NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (917)
Q Consensus 548 ~~~~~~--------~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p 619 (917)
++.... .+..-.......+...++.+.... ..|++..++..|...+. ..|+.++|..+++++++. |
T Consensus 220 ~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~---~~g~~~~A~~~L~~~l~~-~ 293 (398)
T PRK10747 220 DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLI---ECDDHDTAQQIILDGLKR-Q 293 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhc-C
Confidence 665332 222222233344444555555444 26788999999887666 568899999999999995 4
Q ss_pred cCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHH
Q 002477 620 ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699 (917)
Q Consensus 620 ~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~ 699 (917)
+ +..+...|+.+. .|+.+++++..++.++..|+++.+.+..+.+. ...+++++|+..|+++++. .|++. .
T Consensus 294 ~--~~~l~~l~~~l~--~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~--~~~~~~~~A~~~le~al~~-~P~~~---~ 363 (398)
T PRK10747 294 Y--DERLVLLIPRLK--TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL--MKHGEWQEASLAFRAALKQ-RPDAY---D 363 (398)
T ss_pred C--CHHHHHHHhhcc--CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhc-CCCHH---H
Confidence 4 467777777764 49999999999999999999887666555555 6889999999999999999 88764 4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 002477 700 CLKYAELEKSLGEIDRARGIYVFASQFADP 729 (917)
Q Consensus 700 ~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P 729 (917)
|..++.++.+.|+.++|..+|.+++.++++
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 789999999999999999999999987544
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=7.2e-13 Score=156.50 Aligned_cols=237 Identities=14% Similarity=0.063 Sum_probs=189.7
Q ss_pred hCCCCHHHHHHHHH----HHc---CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhc---------CCHHHHH
Q 002477 380 QNPHNVEQWHRRVK----IFE---GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY---------KDIANAR 443 (917)
Q Consensus 380 ~nP~~~~~w~~~~~----l~~---~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~---------g~~~~A~ 443 (917)
.+|.+.+.|..+.. +.. +...+|+..|++|+. ++| .+...|..+|.+|... ++++.|.
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~-ldP-----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~ 324 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN-MSP-----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAK 324 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh-cCC-----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHH
Confidence 46667765544322 222 234689999999995 578 5778888888876532 4589999
Q ss_pred HHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHH
Q 002477 444 VIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (917)
Q Consensus 444 ~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 523 (917)
..++++++.+|.++ .+|..++.++...|++++|...|++++...| ++...|..++.
T Consensus 325 ~~~~~Al~ldP~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--------------------~~~~a~~~lg~ 380 (553)
T PRK12370 325 EHAIKATELDHNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLSP--------------------ISADIKYYYGW 380 (553)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHH
Confidence 99999999999998 9999999999999999999999999999866 57889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCC
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~ 603 (917)
++...|++++|...|++++.++|.++..+..++..+...|++++|...+++++.. ..|+....+..... +.. ..|+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~-~l~--~~G~ 456 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVM-FLS--LKGK 456 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHH-HHH--hCCC
Confidence 9999999999999999999999999887777776677789999999999999975 23666665554433 332 4688
Q ss_pred hHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002477 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654 (917)
Q Consensus 604 ~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~ 654 (917)
+++|+..+.+.+...|. ....+..++..+...| ++|...+++.++..
T Consensus 457 ~~eA~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 457 HELARKLTKEISTQEIT--GLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHHHhhhccch--hHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 99999999998888777 6677777777777777 47777777766543
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-10 Score=130.64 Aligned_cols=293 Identities=18% Similarity=0.149 Sum_probs=203.7
Q ss_pred hHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHH
Q 002477 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479 (917)
Q Consensus 400 ~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~ 479 (917)
.++++.+++|++ ++| .++.+-+.++..|..+++++.|..+..+++++++.+. +..|..+|-+..-++++..
T Consensus 461 ~kslqale~av~-~d~-----~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~---~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 461 KKSLQALEEAVQ-FDP-----TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS---AKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHh-cCC-----CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhhhhhhHH
Confidence 467889999995 577 5677888888899999999999999999999965433 3999999999999999999
Q ss_pred HHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHH--
Q 002477 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL-- 557 (917)
Q Consensus 480 A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~-- 557 (917)
|+.+.+-++..-+ .+..+-..-+.++...++.+++.......+.+.-.-+.+-..+++
T Consensus 532 Al~vvd~al~E~~--------------------~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 532 ALDVVDAALEEFG--------------------DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred HHHHHHHHHHHhh--------------------hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 9999999996533 233333334444455566666655555555442211111111110
Q ss_pred -------HHHHccCHHHHHHHHHHHhhc----------------c---CCCCh-----HHHHHHHHHHHHHHhCCCChHH
Q 002477 558 -------LLEEHKYFEDAFRVYERGVKI----------------F---KYPHV-----KDIWVTYLSKFVKRYGKTKLER 606 (917)
Q Consensus 558 -------~~~~~g~~e~A~~~~eral~~----------------f---~~P~~-----~~lw~~yl~~~~~~~~~~~~e~ 606 (917)
+.....+..+|.+.+.++..+ + +.|.. ..+|......+. ..+..+.
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~---~~~~~~~ 668 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFL---LSGNDDE 668 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHH---hcCCchH
Confidence 000111222222222222211 0 12322 256665544444 3466899
Q ss_pred HHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 002477 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQA 686 (917)
Q Consensus 607 Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~a 686 (917)
|+-....+-..+|- +..+|+..|.+....|...+|...|.-|+..+|++...-.-.+-+........+...|.+...+
T Consensus 669 a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 669 ARSCLLEASKIDPL--SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred HHHHHHHHHhcchh--hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 99899999899998 8999999999999999999999999999999999876543333332212233455566699999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 687 l~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
++. .|.+. +.|..+|.+..+.|+.++|-.+|..|+++ .+.
T Consensus 747 lr~-dp~n~--eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL-e~S 786 (799)
T KOG4162|consen 747 LRL-DPLNH--EAWYYLGEVFKKLGDSKQAAECFQAALQL-EES 786 (799)
T ss_pred Hhh-CCCCH--HHHHHHHHHHHHccchHHHHHHHHHHHhh-ccC
Confidence 999 88877 78999999999999999999999999999 443
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=1.5e-12 Score=135.75 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=143.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhh
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~ 501 (917)
....+..+|..+...|+++.|...|+++++.+|.+. ..|..++.++...|++++|+..+++++...|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------- 96 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTLNP--------- 96 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------
Confidence 456777888888888888888888888888777776 7777778888888888888888888876644
Q ss_pred cCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR--IATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 502 ~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~--p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
.....|..++.++...|++++|...|++++... +..+..+.++|.++...|++++|...|++++..
T Consensus 97 -----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 164 (234)
T TIGR02521 97 -----------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI- 164 (234)
T ss_pred -----------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 345677777777777777888888887777643 344566777777777777777777777777775
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002477 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654 (917)
Q Consensus 580 ~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~ 654 (917)
.|.....|..++..+. ..+++++|...|++++...|. ....+...+.++...|+.+.|..+.+.+....
T Consensus 165 -~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 165 -DPQRPESLLELAELYY---LRGQYKDARAYLERYQQTYNQ--TAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred -CcCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 5665555554433222 346677777777777777555 45666666777777777777777766655443
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.6e-11 Score=125.99 Aligned_cols=291 Identities=13% Similarity=0.074 Sum_probs=207.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhh
Q 002477 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (917)
Q Consensus 429 ~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 508 (917)
+|.++........+...|-.-...-|.|+ .+....|.++...|+.++|+-.|+++..++|.
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~Nv----hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy--------------- 264 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNE----HLMMALGKCLYYNGDYFQAEDIFSSTLCANPD--------------- 264 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccH----HHHHHHhhhhhhhcCchHHHHHHHHHhhCChh---------------
Confidence 44444434444455555555556667777 77888888888888888888888888777662
Q ss_pred hhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHH
Q 002477 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588 (917)
Q Consensus 509 ~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw 588 (917)
..+..-.|+-++...|+++...++-.+.+.....+..-|+--+..+...++++.|+..-+++|.+ +|.+...+
T Consensus 265 -----~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~al 337 (564)
T KOG1174|consen 265 -----NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEAL 337 (564)
T ss_pred -----hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHH
Confidence 34455567777777788888877777777776667777777777777778888888888888886 77776665
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHH-HHHHHH
Q 002477 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG-MYEIYI 667 (917)
Q Consensus 589 ~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~-l~~~~i 667 (917)
..-+..+. ..+..+.|.-.|..|+...|- ....|--+.+.|..+|.+++|+..-..+++..|.+.+.. ++..-+
T Consensus 338 ilKG~lL~---~~~R~~~A~IaFR~Aq~Lap~--rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 338 ILKGRLLI---ALERHTQAVIAFRTAQMLAPY--RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV 412 (564)
T ss_pred HhccHHHH---hccchHHHHHHHHHHHhcchh--hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee
Confidence 55444444 456788888888888888877 577788888888888888888888888888888766532 221111
Q ss_pred HHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcC
Q 002477 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHG 747 (917)
Q Consensus 668 ~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G 747 (917)
.. ..-.+-++|..+|+++++. .|+.- ...+..|.+....|....+.+++++++.. -| +..+...+++|.....
T Consensus 413 ~~-~dp~~rEKAKkf~ek~L~~-~P~Y~--~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~--D~~LH~~Lgd~~~A~N 485 (564)
T KOG1174|consen 413 LF-PDPRMREKAKKFAEKSLKI-NPIYT--PAVNLIAELCQVEGPTKDIIKLLEKHLII-FP--DVNLHNHLGDIMRAQN 485 (564)
T ss_pred ec-cCchhHHHHHHHHHhhhcc-CCccH--HHHHHHHHHHHhhCccchHHHHHHHHHhh-cc--ccHHHHHHHHHHHHhh
Confidence 11 1223457788888888888 88775 56788888888888888888888888876 45 4467777888877777
Q ss_pred CHHHHHHHHH
Q 002477 748 NEDTFREMLR 757 (917)
Q Consensus 748 ~~~~a~~~lr 757 (917)
....+.+-+.
T Consensus 486 e~Q~am~~y~ 495 (564)
T KOG1174|consen 486 EPQKAMEYYY 495 (564)
T ss_pred hHHHHHHHHH
Confidence 6666665553
No 64
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2.2e-10 Score=123.42 Aligned_cols=131 Identities=15% Similarity=0.297 Sum_probs=103.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHh----------hc-CCC-CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhc
Q 002477 48 IYERALKALPGSYKLWHAYLIERLSI----------VK-NLP-ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ 115 (917)
Q Consensus 48 ~yeral~~~P~s~~lW~~yl~~~~~~----------~~-~~~-~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~ 115 (917)
-||--++.-..+..=...|+.++... .+ +.. .+.....++..+|.+|+..++.++++|.+|+.|..+.
T Consensus 39 ~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~ 118 (568)
T KOG2396|consen 39 DFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKK 118 (568)
T ss_pred HHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 34555544445667778888774311 11 111 1233467788999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHHHHHHH
Q 002477 116 KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL 180 (917)
Q Consensus 116 ~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~~i~~l 180 (917)
+.+.....+|..+|+.+| .++.+|...+.++...+..++.|+.+|.|+|.++|++..-+.+|+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp--~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHP--NNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred cchhHHHHHHHHHHHhCC--CCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 989999999999999999 689999999999988887568999999999999999866555554
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.55 E-value=2.5e-12 Score=139.49 Aligned_cols=241 Identities=13% Similarity=0.085 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHH
Q 002477 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517 (917)
Q Consensus 438 ~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (917)
..+.++..+.+++...+.+++..+..|...|.++.+.|+++.|+..|++++...| +++.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--------------------~~~~a 100 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--------------------DMADA 100 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------------------CCHHH
Confidence 3455566666666555544444456666666666666666666666666666544 35566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH--HHHHHHHHHH
Q 002477 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK--DIWVTYLSKF 595 (917)
Q Consensus 518 w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~--~lw~~yl~~~ 595 (917)
|..++.++...|+++.|...|+++++++|+++.+|.++|.++...|++++|++.|++++.+ +|++. .+|.. +
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~----l 174 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLY----L 174 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH----H
Confidence 6666666666666666666666666666666666666666666666666666666666665 55543 22221 1
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcC
Q 002477 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG 675 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~ 675 (917)
.. ..+++++|...|++++...++. .|. ++......|+...+ ..++.+.+....
T Consensus 175 ~~--~~~~~~~A~~~l~~~~~~~~~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~------------------- 227 (296)
T PRK11189 175 AE--SKLDPKQAKENLKQRYEKLDKE----QWG-WNIVEFYLGKISEE-TLMERLKAGATD------------------- 227 (296)
T ss_pred HH--ccCCHHHHHHHHHHHHhhCCcc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCC-------------------
Confidence 11 2245666666665555443321 111 12222223333222 122222211111
Q ss_pred cchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHH
Q 002477 676 VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVN 745 (917)
Q Consensus 676 ~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~ 745 (917)
.++. .|.. .+.|+.+|.++.+.|++++|+..|++|++. +|....+.--...+.+..
T Consensus 228 ----------~~~l-~~~~--~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~-~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 228 ----------NTEL-AERL--CETYFYLAKYYLSLGDLDEAAALFKLALAN-NVYNFVEHRYALLELALL 283 (296)
T ss_pred ----------cHHH-HHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHH
Confidence 1111 2222 256888888888888888888888888887 442134433333333333
No 66
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.55 E-value=1.8e-10 Score=132.45 Aligned_cols=637 Identities=14% Similarity=0.065 Sum_probs=307.9
Q ss_pred HHHHhhCCCChHHHHHHHHHHH-hCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 002477 17 EEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERAL 95 (917)
Q Consensus 17 E~~l~~~P~~~~~W~~yi~~~~-~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL 95 (917)
=+++..+|+-...|--.-...+ -.+..++...|.+|...+|.++..|........ ..++++.|..+.-++-
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya--------e~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA--------EESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh--------ccccHHHHHHHHHHHh
Confidence 3444445544444433322111 114444555555555555555555555554442 3444555554433333
Q ss_pred HhcCC--ChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCH
Q 002477 96 VTMHK--MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (917)
Q Consensus 96 ~~~p~--~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~ 173 (917)
+..|. +..-|...+-++.+.++...+..-|+.||+..| ...+.|......+.+.|.. ..|.++|.|+..+.|.++
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry-~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRY-SHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCce-ehHHHhhhhhHhcCcHhH
Confidence 33321 122355544455555666778888999999999 5688999999988888888 899999999999999885
Q ss_pred HH--HHH-HHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhH
Q 002477 174 ED--FIE-FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGR 250 (917)
Q Consensus 174 ~~--~i~-~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 250 (917)
-. ++. .....|.|.+|...+..++..-....+....-. +
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa--------------------------------------E 672 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA--------------------------------------E 672 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH--------------------------------------H
Confidence 22 222 446678888888888877732100000001111 1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhhhcccc--------hhc-hHHHHHHHH---HHHH--------HHHHHHhcCCCCC
Q 002477 251 LWTSLADYYIRRELFEKARDIFEEGMMTVVT--------VRD-FSVIFDSYS---QFEE--------IMVSAKMAKPDLS 310 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~al~~~~~--------~~d-~~~i~~~y~---~fe~--------~~~~~~~e~~~~~ 310 (917)
.....+.-+..+|-..+|.+++++++..+.. ++- |...-++-. +.|- .++...++.....
T Consensus 673 ~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l 752 (1238)
T KOG1127|consen 673 SVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGAL 752 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccC
Confidence 1122222222233333344444443332110 000 000000000 0000 0000111111111
Q ss_pred ccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhh--hhHHhhCCCCHHHH
Q 002477 311 VEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELAN--SVLLRQNPHNVEQW 388 (917)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~--~~~L~~nP~~~~~w 388 (917)
.++ +-.-+.+.|+..++...+....|.+--...-.....+.+-+.+.-..++ ...++...++...|
T Consensus 753 ~~~------------d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~W 820 (1238)
T KOG1127|consen 753 KKN------------DLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLW 820 (1238)
T ss_pred cch------------hHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHH
Confidence 111 1122333444444444443333321100000000000000111100111 11345566677777
Q ss_pred HHHHHHHc-CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHH
Q 002477 389 HRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (917)
Q Consensus 389 ~~~~~l~~-~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~ 467 (917)
..++-+-. ++..-+.-.|-+++.. .| ..+..|.+++.++..+.+++.|...|.++...+|.+. .-|...
T Consensus 821 naLGVlsg~gnva~aQHCfIks~~s-ep-----~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl----~~WlG~ 890 (1238)
T KOG1127|consen 821 NALGVLSGIGNVACAQHCFIKSRFS-EP-----TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL----VQWLGE 890 (1238)
T ss_pred HHHHHhhccchhhhhhhhhhhhhhc-cc-----cchhheeccceeEEecccHHHhhHHHHhhhhcCchhh----HHHHHH
Confidence 76655522 3444444456555532 33 5667777777777777777777777777777777776 777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC--CChhHHHhhh-------------------hcCCchh--------hhhhhccHHHH
Q 002477 468 AEMELRHKNFKGALELMRRATAE--PSVEVRRRVA-------------------ADGNEPV--------QMKLHKSLRLW 518 (917)
Q Consensus 468 a~~e~~~~~~~~A~~~l~~al~~--~~~~~~~~~~-------------------~~~~~~~--------~~~~~~~~~~w 518 (917)
+.+-...|+.-++..+|.-.... .......+.+ ..+..+. ..+.|.+...+
T Consensus 891 Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy 970 (1238)
T KOG1127|consen 891 ALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAY 970 (1238)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHH
Confidence 77777777666666666653221 1100000000 0011110 11233444455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 519 TFYVDLEESLGNLESTRAVYERILDL------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 519 ~~~~~l~~~~g~~~~A~~~y~~al~~------~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
..-+.+.+.++.+..|...+.|.+.+ ...++.+--++|+++...|.|+.|...+..-- -....++...-+
T Consensus 971 ~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~----~evdEdi~gt~l 1046 (1238)
T KOG1127|consen 971 AANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW----MEVDEDIRGTDL 1046 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc----hhHHHHHhhhhH
Confidence 55555666666666677666666554 12223355566777777777665443321100 011122222223
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHH--HHHHHHH
Q 002477 593 SKFVKRYGKTKLERARELFENAVETAPADAVK-PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM--YEIYIAR 669 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~-~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l--~~~~i~~ 669 (917)
+.|. .++++++.+.|++++.....+.+. .+....+......|..+.|...+-.++...|......+ --++|..
T Consensus 1047 ~lFf----kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1047 TLFF----KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHH----HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHh
Confidence 3333 256888888888888776554332 23333444455566777777777777766665432221 1122211
Q ss_pred HHHhcCcchHHHHHHHHHHhCCCCchH--HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHH
Q 002477 670 AAEIFGVPKTREIYEQAIESGLPDKDV--KAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWH 740 (917)
Q Consensus 670 ~~~~~~~~~ar~~ye~al~~~~p~~~~--~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~ 740 (917)
...-+...+.+-+++. |.... -+-++..-.++..+|+-+......+|++-. .|. ++.+|..+-
T Consensus 1123 -~da~~ssaileel~kl-----~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~-~P~-~~~~WslL~ 1187 (1238)
T KOG1127|consen 1123 -ADAHGSSAILEELEKL-----LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHS-NPG-DPALWSLLS 1187 (1238)
T ss_pred -hhhhhhHHHHHHHHHh-----hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhc-CCC-ChHHHHHHH
Confidence 1111222222222222 22110 011223334566778888888888888866 787 788887653
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.54 E-value=4.6e-13 Score=145.26 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHhcc--CCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCH
Q 002477 400 TKQILTYTEAVRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (917)
Q Consensus 400 ~~a~~~y~~Ai~~i--~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~ 477 (917)
+.++..+.++|... +| ......|...|..|...|+.+.|+..|+++++.+|+++ .+|..+|.++...|++
T Consensus 43 e~~i~~~~~~l~~~~~~~----~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 43 EVILARLNQILASRDLTD----EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQAGNF 114 (296)
T ss_pred HHHHHHHHHHHccccCCc----HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCH
Confidence 45777888888542 22 24567899999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002477 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (917)
Q Consensus 478 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~ 557 (917)
+.|+..|++++...| .....|...+.++...|++++|...|++++..+|.++.. ..+..
T Consensus 115 ~~A~~~~~~Al~l~P--------------------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~ 173 (296)
T PRK11189 115 DAAYEAFDSVLELDP--------------------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLY 173 (296)
T ss_pred HHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHH
Confidence 999999999999866 477899999999999999999999999999999999842 22233
Q ss_pred HHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HhCCcCCcHHHHHHH
Q 002477 558 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV-------ETAPADAVKPLYLQY 630 (917)
Q Consensus 558 ~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al-------~~~p~~~~~~l~~~~ 630 (917)
+....+++++|...|++++... .|.. |...+..+. .++...+ ..|+.++ +..|. ....|+.+
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~-~~~~---~~~~~~~~~----lg~~~~~-~~~~~~~~~~~~~~~l~~~--~~ea~~~L 242 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKL-DKEQ---WGWNIVEFY----LGKISEE-TLMERLKAGATDNTELAER--LCETYFYL 242 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhC-Cccc---cHHHHHHHH----ccCCCHH-HHHHHHHhcCCCcHHHHHH--HHHHHHHH
Confidence 4556789999999998877642 3332 332221121 2333333 2444443 33444 46789999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 631 AKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 631 a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
|.++.+.|++++|+..|+++++.+|.+
T Consensus 243 g~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 243 AKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 999999999999999999999999853
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-11 Score=134.92 Aligned_cols=286 Identities=12% Similarity=0.090 Sum_probs=232.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
.+..+....|.-+...+++.....+++..++.+|-+. ..+....-.+...|+..+-..+=.+.+...|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~----~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-------- 309 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL----PCLPLHIACLYELGKSNKLFLLSHKLVDLYP-------- 309 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc----chHHHHHHHHHHhcccchHHHHHHHHHHhCC--------
Confidence 4678889999999999999999999999999999887 5444444455667777776666677776543
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
+++--|+..+-.+...|.+.+||..|.++..++|....+|+.+|..+.-.|.-++|+..|-+|-++|+
T Consensus 310 ------------~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 310 ------------SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred ------------CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 58889999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---
Q 002477 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH--- 657 (917)
Q Consensus 581 ~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~--- 657 (917)
..+-+.+ |++.-. ...++++.|...|.+|+..+|. ++-+....|.+....+.+.+|...|+.++...+..
T Consensus 378 G~hlP~L---Ylgmey--~~t~n~kLAe~Ff~~A~ai~P~--Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 378 GCHLPSL---YLGMEY--MRTNNLKLAEKFFKQALAIAPS--DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred CCcchHH---HHHHHH--HHhccHHHHHHHHHHHHhcCCC--cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 4444443 333222 2457899999999999999999 78899999999999999999999999999544331
Q ss_pred ChHH--HHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCC--H
Q 002477 658 EKLG--MYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD--T 733 (917)
Q Consensus 658 ~~~~--l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~--~ 733 (917)
..+| ++......+.+++.+..|+..|+++|.. .|.+. ..+-..|-++..+|+++.|...|.+|+.+ +|+.. .
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~--~~~asig~iy~llgnld~Aid~fhKaL~l-~p~n~~~~ 526 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDA--STHASIGYIYHLLGNLDKAIDHFHKALAL-KPDNIFIS 526 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCch--hHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCccHHHH
Confidence 1122 3455555567889999999999999999 88776 56777888889999999999999999998 78721 2
Q ss_pred HHHHHHHH
Q 002477 734 EFWNRWHE 741 (917)
Q Consensus 734 ~~w~~~~~ 741 (917)
.+....++
T Consensus 527 ~lL~~aie 534 (611)
T KOG1173|consen 527 ELLKLAIE 534 (611)
T ss_pred HHHHHHHH
Confidence 44444443
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=2.9e-12 Score=133.52 Aligned_cols=202 Identities=17% Similarity=0.158 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (917)
Q Consensus 461 ~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~ 540 (917)
+..+..++..+...|++++|+..+++++...| .+...|..++.++...|+++.|...|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 90 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP--------------------DDYLAYLALALYYQQLGELEKAEDSFRR 90 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47788888888888999999999998887644 3567888888888888999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 541 al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
++...|.++.++.+++.++...|++++|...|++++.....|.....|..++..+. ..+++++|...|++++...|.
T Consensus 91 al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL---KAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcC
Confidence 99888888888888898888889999999999998875333444455554433222 456788888888888888887
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh
Q 002477 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 621 ~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~ 689 (917)
....+..++.++...|++++|...++++++..|.++.... .........|+.+.|+.+.+.+...
T Consensus 168 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 168 --RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW--LGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5777888888888888888888888888887665433322 2223334556677777766665543
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.54 E-value=2.6e-12 Score=125.68 Aligned_cols=206 Identities=17% Similarity=0.106 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhc
Q 002477 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (917)
Q Consensus 423 ~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~ 502 (917)
....+.+|.-|..+|++..|+.-+++||+.+|++. ..|...|.++.+.|..+.|.+.|++|+++.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---------- 100 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKLGENDLADESYRKALSLAP---------- 100 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----------
Confidence 35677888888899999999999999999999888 8899999999999999999999999998865
Q ss_pred CCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 503 ~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
++..+.+.|+-++..+|.+++|...|++++.. |.. +..|.|.+.+-.+.|+++.|...|+|++.+
T Consensus 101 ----------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~- 168 (250)
T COG3063 101 ----------NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL- 168 (250)
T ss_pred ----------CccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-
Confidence 57888888999999999999999999999874 443 467888888888999999999999999986
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCCh
Q 002477 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 580 ~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~ 659 (917)
+|+....... ++-..++.+++-.|+..|++-....+. .......-+++....|+...+-..=.+.-+..|.++.
T Consensus 169 -dp~~~~~~l~---~a~~~~~~~~y~~Ar~~~~~~~~~~~~--~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 169 -DPQFPPALLE---LARLHYKAGDYAPARLYLERYQQRGGA--QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred -CcCCChHHHH---HHHHHHhcccchHHHHHHHHHHhcccc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 7776544333 233334667888999999988887775 4555555678888889888887777777777887654
Q ss_pred H
Q 002477 660 L 660 (917)
Q Consensus 660 ~ 660 (917)
.
T Consensus 243 ~ 243 (250)
T COG3063 243 Y 243 (250)
T ss_pred H
Confidence 4
No 71
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.3e-11 Score=137.92 Aligned_cols=433 Identities=19% Similarity=0.275 Sum_probs=273.6
Q ss_pred hHHHHHHhhCCCChHHHHHHHH-HHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 002477 14 LLYEEELLRNPFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (917)
Q Consensus 14 ~~~E~~l~~~P~~~~~W~~yi~-~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~e 92 (917)
.-+|+.+..||+++.+...||. .++.+.+.+....-..+...+|.+..+|..|+.-+.... ....-..+...|+
T Consensus 100 ~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt-----~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT-----QSEERKEVEELFE 174 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----cCcchhHHHHHHH
Confidence 4588999999999988888877 456778888888888899999999999999998874321 2367788999999
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcc-------cHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHcCCC--hHhHHHH
Q 002477 93 RALVTMHKMPRIWIMYLETLTSQK-------FITKARRTFDRALCALP--VTQHDRIWEIYLRFVEQEGIP--IETSLRV 161 (917)
Q Consensus 93 raL~~~p~~~~lw~~y~~~~~~~~-------~~~~ar~~~~rAL~~~P--~~~~~~iw~~y~~~~~~~~~~--~~~a~~~ 161 (917)
+||. +.+++.+|..|+.|+...+ .+...|.+|.|||+.+. .+....+|.+|..|+...-+. .+.....
T Consensus 175 kal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9996 6789999999999998755 46789999999999998 345678999999997653322 1346778
Q ss_pred HHHHHccCCCCHH----HHH------HHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccc
Q 002477 162 YRRYLKYDPSHIE----DFI------EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGL 231 (917)
Q Consensus 162 ~~r~l~~~P~~~~----~~i------~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~ 231 (917)
+.+.|.. |.+.+ +|- -+.....+++.+.+.+.+++-...-.-.......+.|+.|++++...+..+.
T Consensus 254 ~~~el~~-~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r-- 330 (881)
T KOG0128|consen 254 FVRELKQ-PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR-- 330 (881)
T ss_pred HHHHHhc-cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH--
Confidence 8888884 54311 111 1345566777777777777632111111235678899999999988776542
Q ss_pred cHHHHHHhhhhcccchhhHHHHHHHHHHHH-hCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002477 232 NVDAIIRGGIRKFTDEVGRLWTSLADYYIR-RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310 (917)
Q Consensus 232 ~~~~~l~~~i~~~~~~~~~lw~~la~~y~~-~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~ 310 (917)
+..+..+++..++.. ..+|+.++.|.-. .+-...+..++-+++..+|-.-+ +|.-|. ++ ++...
T Consensus 331 -i~l~~eR~~~E~~~~-~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd---L~~ral-lA-------leR~r-- 395 (881)
T KOG0128|consen 331 -IQLIEERAVAEMVLD-RALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD---LWKRAL-LA-------LERNR-- 395 (881)
T ss_pred -HHHHHHHHHHhcccc-HHHHhhhhhhcccccccccccccccchhhcCCchHHH---HHHHHH-HH-------HHhcC--
Confidence 445566666666665 5789988776432 34555667777788887765433 232222 11 11111
Q ss_pred ccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHH--hhCCCCHHHH
Q 002477 311 VEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLL--RQNPHNVEQW 388 (917)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L--~~nP~~~~~w 388 (917)
+.++++ ...++.-+...-.+.++.++ +.+-+-.+
T Consensus 396 ---------------e~~~vI---------------------------~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~-- 431 (881)
T KOG0128|consen 396 ---------------EEITVI---------------------------VQNLEKDLSMTVELHNDYLAYRRRCTNIID-- 431 (881)
T ss_pred ---------------cchhhH---------------------------HHHHHHHHHHHHHHHHHHHHHHHhhcccch--
Confidence 001111 12222211111111111110 00100000
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhccCCCc--cCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCChhhhHHHHH
Q 002477 389 HRRVKIFEGNPTKQILTYTEAVRTVDPMK--AVGKPHTLWVAFAKLYET-YKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (917)
Q Consensus 389 ~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~--~~~~~~~lw~~~a~~~~~-~g~~~~A~~i~e~al~~~~~~~~~l~~~w~ 465 (917)
..+.+...+.|+.|...+.+.- .......+...+|.++.. .++.+.||.+++..+.....+. +..|+
T Consensus 432 -------s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i---ag~Wl 501 (881)
T KOG0128|consen 432 -------SQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI---AGKWL 501 (881)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH---HHHHH
Confidence 0112222333333332211100 001123445556667665 6899999999999888766555 35999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002477 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK-SLRLWTFYVDLEESLGNLESTRAVYERIL 542 (917)
Q Consensus 466 ~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~l~~~~g~~~~A~~~y~~al 542 (917)
.++.++...|+...++.++++|...+. .+. ...+...|..++...|+++.....-++.+
T Consensus 502 e~~~lE~~~g~~~~~R~~~R~ay~~~~------------------~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 502 EAINLEREYGDGPSARKVLRKAYSQVV------------------DPEDALEVLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHhHHHHhCCchhHHHHHHHHHhcCc------------------CchhHHHHHHHHHHHHhccccHHHHhhhHHhhc
Confidence 999999999999999999998875432 111 34667777888888888877665554433
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.2e-12 Score=138.33 Aligned_cols=276 Identities=14% Similarity=0.124 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhh
Q 002477 383 HNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL 460 (917)
Q Consensus 383 ~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l 460 (917)
++++....+++.+ ...+.+..+.++..+. ++|. ...-+-..+|.++ ..|+...--.+=-+.+...|+++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle-~dpf----h~~~~~~~ia~l~-el~~~n~Lf~lsh~LV~~yP~~a--- 312 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLE-KDPF----HLPCLPLHIACLY-ELGKSNKLFLLSHKLVDLYPSKA--- 312 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHh-hCCC----CcchHHHHHHHHH-HhcccchHHHHHHHHHHhCCCCC---
Confidence 4444554444433 2455566666666664 3551 2333344555333 33333222222233445566666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (917)
Q Consensus 461 ~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~ 540 (917)
..|+..|-++.-.|++.+|++.|.+++.+.| .-...|..|+..+.-.|..|+|..+|-.
T Consensus 313 -~sW~aVg~YYl~i~k~seARry~SKat~lD~--------------------~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 313 -LSWFAVGCYYLMIGKYSEARRYFSKATTLDP--------------------TFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred -cchhhHHHHHHHhcCcHHHHHHHHHHhhcCc--------------------cccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 7777777777777777777777777777755 2456777777777777777777777777
Q ss_pred HHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 541 al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
|-.+.|.+..-.+-+|.=+.+.++++-|-+.|.+|+.+ .|.++-+.+. ++... +..+.+.+|...|..++...+.
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~E-lgvva--y~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHE-LGVVA--YTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhh-hhhee--ehHhhhHHHHHHHHHHHHHhhh
Confidence 77777776555555566666677777777777777776 5666554443 22211 1234577777777777744322
Q ss_pred C-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCch
Q 002477 621 D-----AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (917)
Q Consensus 621 ~-----~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~ 695 (917)
. ...+++.++|+.+.++|.+++|+..|++++...|.+.....-.+|+. .-+|+++.|...|.+++-. .|++.
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy--~llgnld~Aid~fhKaL~l-~p~n~ 523 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY--HLLGNLDKAIDHFHKALAL-KPDNI 523 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH--HHhcChHHHHHHHHHHHhc-CCccH
Confidence 1 13456777777777777777777777777777777666666666665 4667777777777777777 67664
Q ss_pred H
Q 002477 696 V 696 (917)
Q Consensus 696 ~ 696 (917)
.
T Consensus 524 ~ 524 (611)
T KOG1173|consen 524 F 524 (611)
T ss_pred H
Confidence 4
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.51 E-value=4.7e-10 Score=129.05 Aligned_cols=484 Identities=11% Similarity=0.026 Sum_probs=301.4
Q ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHH
Q 002477 41 PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITK 120 (917)
Q Consensus 41 ~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ 120 (917)
....+...|=|+++.+|.-...|.....+.+ .-.+..+|..+|.+|...++.....|...++.+.+..+.+.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYr--------d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYR--------DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 3566777889999999999999998888875 33377889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC---HHHHHHHHHhcccHHHHHHHHHHHh
Q 002477 121 ARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH---IEDFIEFLVKSKLWQEAAERLASVL 197 (917)
Q Consensus 121 ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~---~~~~i~~l~~~~~~~~A~~~l~~~l 197 (917)
|..+.-++-+..|.-.-..-|....-+....+.. ..++.-|+.+|..+|.+ |..+.+.+...|++..|.+.+.++.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~-h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL-HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccch-hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 9888777777777322233455544444444554 68999999999999987 4555568889999999999986654
Q ss_pred cCCccccccCCCchHHHHHHHHHHh--ccccccccccHHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHh
Q 002477 198 NDDQFYSIKGKTKHRLWLELCDLLT--THATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEG 275 (917)
Q Consensus 198 ~~~~~~~~~~~~~~~lw~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~a 275 (917)
.-. ..+. +..+..... ..++- ..+..++...+..+.+. .....+|+..+++...---++.++.++
T Consensus 624 ~Lr------P~s~---y~~fk~A~~ecd~GkY---keald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 624 LLR------PLSK---YGRFKEAVMECDNGKY---KEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred hcC------cHhH---HHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 210 0111 111111111 01110 01222233333333333 224456666666554433333333333
Q ss_pred hhcccchhchHHHHHHHHHHHHHHH---HHHhcCCCCCccccccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCcc
Q 002477 276 MMTVVTVRDFSVIFDSYSQFEEIMV---SAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDV 352 (917)
Q Consensus 276 l~~~~~~~d~~~i~~~y~~fe~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 352 (917)
+... |.++. -...+..- ++
T Consensus 691 vd~~----------------eksie~f~~~l~h~~~---~~--------------------------------------- 712 (1238)
T KOG1127|consen 691 VDFF----------------EKSIESFIVSLIHSLQ---SD--------------------------------------- 712 (1238)
T ss_pred hHHH----------------HHHHHHHHHHHHHhhh---hh---------------------------------------
Confidence 3211 11110 00000000 00
Q ss_pred chHHHHHHHHHHhhhhchhhhhhhH---HhhCCCCHHHHHHH--H-HHHc---C-Cch---HHHHHHHHHHhccCCCccC
Q 002477 353 KDVDLRLARLEHLMNRRPELANSVL---LRQNPHNVEQWHRR--V-KIFE---G-NPT---KQILTYTEAVRTVDPMKAV 419 (917)
Q Consensus 353 ~~~~~~l~~~e~l~~~~~~~~~~~~---L~~nP~~~~~w~~~--~-~l~~---~-~~~---~a~~~y~~Ai~~i~p~~~~ 419 (917)
.-.+. .+.+++ ...-|+-+.....- . ++.. . +.+ -+.+.|...++.+.
T Consensus 713 ~~~Wi--------------~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~----- 773 (1238)
T KOG1127|consen 713 RLQWI--------------VASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI----- 773 (1238)
T ss_pred HHHHH--------------HHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-----
Confidence 00000 000000 00112211111100 0 0110 0 101 12333444443321
Q ss_pred CCcHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 002477 420 GKPHTLWVAFAKLYET--------YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (917)
Q Consensus 420 ~~~~~lw~~~a~~~~~--------~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~ 491 (917)
.+..|+.++.-|.+ ..+...|...+.++++...++. ..|..++-+ ...|++.-|...|-+++...
T Consensus 774 --~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~----~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 774 --HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE----GLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred --ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH----HHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 23668888776665 2344589999999999998888 999999987 55688999999999988775
Q ss_pred ChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHH
Q 002477 492 SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRV 571 (917)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~ 571 (917)
| .+.-.|..++-+.....+++.|..+|.++..++|.+...|+..|.+.+..|+.-++..+
T Consensus 847 p--------------------~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 847 P--------------------TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred c--------------------cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 5 57899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHhhcc-CCCC--hHHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH
Q 002477 572 YERGVKIF-KYPH--VKDIWVTYLSKFVKRY--------GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (917)
Q Consensus 572 ~eral~~f-~~P~--~~~lw~~yl~~~~~~~--------~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~ 640 (917)
|...-.+- +... .+..|..- +...... ..++...|--..++-+...|+ ....|...|...+..+.+
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~-te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~--~~fAy~~~gstlEhL~ey 983 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCA-TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ--LCFAYAANGSTLEHLEEY 983 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHH-HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc--hhHHHHHHHhHHHHHHHH
Confidence 87733321 1111 12334321 1111111 112344455566677777888 678888889999999999
Q ss_pred HHHHHHHHHHHhh
Q 002477 641 KRAMKVYDQATKA 653 (917)
Q Consensus 641 ~~A~~~y~~al~~ 653 (917)
+.|...+.|.+..
T Consensus 984 ~~a~ela~Rligl 996 (1238)
T KOG1127|consen 984 RAALELATRLIGL 996 (1238)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887753
No 74
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5e-11 Score=125.57 Aligned_cols=282 Identities=17% Similarity=0.129 Sum_probs=202.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHH-H-hcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCc
Q 002477 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME-L-RHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (917)
Q Consensus 428 ~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e-~-~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 505 (917)
.-|.-+.++|+++.|.+++.-.-+.+.+... ..-..+.-+. + --+++..|.+.-+.++.+..
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~s---aaa~nl~~l~flqggk~~~~aqqyad~aln~dr------------- 487 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTAS---AAANNLCALRFLQGGKDFADAQQYADIALNIDR------------- 487 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhH---HHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-------------
Confidence 3344556677777777766544433332211 1111111111 2 22356667777777766533
Q ss_pred hhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 506 ~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
-++.....-+++....|++++|...|..++..+..+.++.++.+..++..|+.++|+..|-+.-.+. -++.
T Consensus 488 -------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il--~nn~ 558 (840)
T KOG2003|consen 488 -------YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--LNNA 558 (840)
T ss_pred -------cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--HhhH
Confidence 1344455555666677999999999999999888889999999999999999999999998877763 3344
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH--HHH
Q 002477 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL--GMY 663 (917)
Q Consensus 586 ~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~--~l~ 663 (917)
++...... +++ ...+...|.+++-|+....|+ ++.+...++.++.+.|+...|.+.+-...+.+|-+-.. |+-
T Consensus 559 evl~qian-iye--~led~aqaie~~~q~~slip~--dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLVQIAN-IYE--LLEDPAQAIELLMQANSLIPN--DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHHHHH-HHH--HhhCHHHHHHHHHHhcccCCC--CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 54444332 333 235689999999999999999 79999999999999999999999999999999987665 444
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 002477 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFE 743 (917)
Q Consensus 664 ~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe 743 (917)
..||. ..=.++++..|++|--. .|+.. .--+..+...++.|++.+|..+|...-.. -|. +.+..+.+..+.
T Consensus 634 ayyid----tqf~ekai~y~ekaali-qp~~~--kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpe-dldclkflvri~ 704 (840)
T KOG2003|consen 634 AYYID----TQFSEKAINYFEKAALI-QPNQS--KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPE-DLDCLKFLVRIA 704 (840)
T ss_pred HHHHh----hHHHHHHHHHHHHHHhc-CccHH--HHHHHHHHHHHhcccHHHHHHHHHHHHHh-Ccc-chHHHHHHHHHh
Confidence 44443 34568899999999877 67643 23466778889999999999999998777 676 667777666665
Q ss_pred HHcCC
Q 002477 744 VNHGN 748 (917)
Q Consensus 744 ~~~G~ 748 (917)
...|-
T Consensus 705 ~dlgl 709 (840)
T KOG2003|consen 705 GDLGL 709 (840)
T ss_pred ccccc
Confidence 55553
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-10 Score=120.51 Aligned_cols=295 Identities=15% Similarity=0.116 Sum_probs=236.5
Q ss_pred HHHHcCCchHHHHH--HHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHH
Q 002477 392 VKIFEGNPTKQILT--YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (917)
Q Consensus 392 ~~l~~~~~~~a~~~--y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~ 469 (917)
+..+.++...+..+ +-+-..+ .+.+..+...+|++|...|+..+|...|+++...+|.++ .....||-
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~------lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Ya~ 274 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTT------LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLYAV 274 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhcc------CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHHHH
Confidence 34444544444444 3333322 246889999999999999999999999999999999998 88888999
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCH
Q 002477 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (917)
Q Consensus 470 ~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~ 549 (917)
+..+.|+++.--++..+.+.... ....-|+--+.+....+++..|...-+++|+.+|.+.
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~~--------------------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKVK--------------------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhhh--------------------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 99999999999999999887643 1345677777777778899999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHH
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~ 629 (917)
++++.-|.++...|+.++|.=.|..++.+ -|...+.+...+..+. ..+++.+|.-+-.-++...|. +......
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYL---A~~~~kEA~~~An~~~~~~~~--sA~~LtL 407 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYL---AQKRFKEANALANWTIRLFQN--SARSLTL 407 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHhhc--chhhhhh
Confidence 99999999999999999999999999998 7877776665544433 668899999999999999998 5555555
Q ss_pred HH-HH-HHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 002477 630 YA-KL-EEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELE 707 (917)
Q Consensus 630 ~a-~~-e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le 707 (917)
+| .+ ...--.-++|...|+++++..|..-..-+. ..+.....|....+..+.++.+.. .|+. .+...+|++.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~--~AEL~~~Eg~~~D~i~LLe~~L~~-~~D~---~LH~~Lgd~~ 481 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL--IAELCQVEGPTKDIIKLLEKHLII-FPDV---NLHNHLGDIM 481 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH--HHHHHHhhCccchHHHHHHHHHhh-cccc---HHHHHHHHHH
Confidence 54 22 222344589999999999999984333222 222224568899999999999998 8876 4688999999
Q ss_pred HHcCChhHHHHHHHHHHccCCCC
Q 002477 708 KSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 708 ~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
...+++.+|...|..|+.. ||.
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~-dP~ 503 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQ-DPK 503 (564)
T ss_pred HHhhhHHHHHHHHHHHHhc-Ccc
Confidence 9999999999999999998 897
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=4.1e-10 Score=127.19 Aligned_cols=447 Identities=16% Similarity=0.144 Sum_probs=278.7
Q ss_pred cCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccC--CCCHHH
Q 002477 98 MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD--PSHIED 175 (917)
Q Consensus 98 ~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~--P~~~~~ 175 (917)
+.+.+.||-...-++..-|+++.+.+.|++++...= .....|..+.--+...|.. ..|+.+.+..+... |++...
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~-s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSD-SKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccc-hHHHHHHHhhcccccCCCcchH
Confidence 357889999999999999999999999999987766 3567788888777777776 79999999999998 776555
Q ss_pred HHH----HHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHH
Q 002477 176 FIE----FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRL 251 (917)
Q Consensus 176 ~i~----~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l 251 (917)
++. .+-+.+.+.++...-.+++++-.-....-+...++....+- . -..+- ..+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y--~-----------------~~A~~----a~~ 452 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAY--G-----------------FQARQ----ANL 452 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH--H-----------------hHhhc----CCC
Confidence 442 33455777788777777775310000000011111111100 0 00000 001
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccCCcchhhhHhh
Q 002477 252 WTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLD 331 (917)
Q Consensus 252 w~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (917)
|. .|-....++...++++++..++..+. ..|.++-.-+..-
T Consensus 453 ~s------eR~~~h~kslqale~av~~d~~dp~~-if~lalq~A~~R~-------------------------------- 493 (799)
T KOG4162|consen 453 KS------ERDALHKKSLQALEEAVQFDPTDPLV-IFYLALQYAEQRQ-------------------------------- 493 (799)
T ss_pred hH------HHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHh--------------------------------
Confidence 11 11223467888999999988876642 2223333222221
Q ss_pred hhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhC-CCCHHHHHHHHHHHc--CCchHHHHHHHH
Q 002477 332 VNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQN-PHNVEQWHRRVKIFE--GNPTKQILTYTE 408 (917)
Q Consensus 332 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~n-P~~~~~w~~~~~l~~--~~~~~a~~~y~~ 408 (917)
+..++....+ .|..| -.+...|+..+-++. +++..|+.+-.-
T Consensus 494 -----------------------l~sAl~~~~e------------aL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 494 -----------------------LTSALDYARE------------ALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred -----------------------HHHHHHHHHH------------HHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222222222 23332 334566776666653 455666666666
Q ss_pred HHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh---hhh--HHHHHHHHHHHHhcCCHHHHHHH
Q 002477 409 AVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV---DHL--ASIWCEWAEMELRHKNFKGALEL 483 (917)
Q Consensus 409 Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~---~~l--~~~w~~~a~~e~~~~~~~~A~~~ 483 (917)
++.. +|.++.+-..-+.+....|+.++|.......|.+--.-. ..+ ...--.-+.+.+...+...|.+.
T Consensus 539 al~E------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 539 ALEE------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHH------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 6544 234444444444444455666666655555443211000 000 00111111122222344444444
Q ss_pred HHHHHcCCChhHHHhhhhcC---Cchhhhh-------hhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHH
Q 002477 484 MRRATAEPSVEVRRRVAADG---NEPVQMK-------LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 484 l~~al~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
.+++...-. .+....+ ..|.... .....++|...+++....++.+.|..+...+-...|-.+.+|.
T Consensus 613 sr~ls~l~a----~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 613 SRYLSSLVA----SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred hHHHHHHHH----hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 444332100 0000001 1121111 2234688999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHH
Q 002477 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633 (917)
Q Consensus 554 ~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~ 633 (917)
..|..+...|.+++|...|--|+.+ +|+++.+....+ ......|.......+.+...+++..|. +.+.|+.+|.+
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala-~~lle~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v 763 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALA-ELLLELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEV 763 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHH-HHHHHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Confidence 9999999999999999999999998 999988888754 444445666788888899999999999 89999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCCh
Q 002477 634 EEDYGLAKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 634 e~~~g~~~~A~~~y~~al~~~p~~~~ 659 (917)
..+.|+.++|...|.-|++..+.+|.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999888764
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=5.3e-11 Score=121.86 Aligned_cols=324 Identities=13% Similarity=0.111 Sum_probs=250.3
Q ss_pred CCCCHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 002477 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (917)
Q Consensus 381 nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~ 458 (917)
+|.++...+..+.-+ .++...|+..|-.||. .+| ++....+.-|..|...|.-.-|..-+.+.|+..|...
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve-~dp-----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~- 106 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVE-GDP-----NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM- 106 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-CCc-----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-
Confidence 455555555555543 4677889999999995 577 5677788899999999999999999999999988766
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHH--HcCCHHHHHH
Q 002477 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE--SLGNLESTRA 536 (917)
Q Consensus 459 ~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~--~~g~~~~A~~ 536 (917)
...+..+.+.+++|.+++|..-|+..+...|.. .....+|.++-....-|...-.+.. ..|+...|+.
T Consensus 107 ---~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-------~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 107 ---AARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-------GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred ---HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-------chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 889999999999999999999999999876511 0112345555556666665544433 3589999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 537 ~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
...++++..|.+...+...+.+|...|.+..|+.-+..+-++ ..++.+.+... +.+. |..|+.+.+......||+
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~yki-s~L~--Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKI-SQLL--YTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHH-HHHH--HhhhhHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998 34444444332 2333 256789999999999999
Q ss_pred hCCcC-CcHHHHHHHHHHH---------HHhCCHHHHHHHHHHHHhhCCCCCh--HHHHHHHHHHHHHhcCcchHHHHHH
Q 002477 617 TAPAD-AVKPLYLQYAKLE---------EDYGLAKRAMKVYDQATKAVPNHEK--LGMYEIYIARAAEIFGVPKTREIYE 684 (917)
Q Consensus 617 ~~p~~-~~~~l~~~~a~~e---------~~~g~~~~A~~~y~~al~~~p~~~~--~~l~~~~i~~~~~~~~~~~ar~~ye 684 (917)
.+|++ .|.+.|-.+-++. .+.+.+.++++.++..++..|.... +..+........+-+.+.+|++.+.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 99985 2334444433322 2367888999999999999998543 3344444444556788999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 685 ~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
++++. .|++. .++..-|..+.-..++|.|..-|++|.+. +|+
T Consensus 332 evL~~-d~~dv--~~l~dRAeA~l~dE~YD~AI~dye~A~e~-n~s 373 (504)
T KOG0624|consen 332 EVLDI-DPDDV--QVLCDRAEAYLGDEMYDDAIHDYEKALEL-NES 373 (504)
T ss_pred HHHhc-CchHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhc-Ccc
Confidence 99998 77655 56777788887788899999999999988 665
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.8e-12 Score=129.37 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=191.4
Q ss_pred cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcC
Q 002477 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (917)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~ 475 (917)
.+-+.+|...++.++++. ..++.+.-+++.|-+.++...|..+|..++...|.++ ...+..|.++...+
T Consensus 236 Lgm~r~AekqlqssL~q~-------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQF-------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAME 304 (478)
T ss_pred hcChhhhHHHHHHHhhcC-------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHHH
Confidence 477888999999998763 3578899999999999999999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHH
Q 002477 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (917)
Q Consensus 476 ~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~ 555 (917)
+.+.|.++|+.+++..|..+ +..-..+.-+.--++++-|...|.|++.....+|+.+.|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nv--------------------EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINV--------------------EAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred hHHHHHHHHHHHHhcCCccc--------------------eeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 99999999999998765222 1111111122334789999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHhhccCCCCh-HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHH
Q 002477 556 ALLLEEHKYFEDAFRVYERGVKIFKYPHV-KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE 634 (917)
Q Consensus 556 a~~~~~~g~~e~A~~~~eral~~f~~P~~-~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e 634 (917)
|.+..-.++++-++..|+|++..-..|.. .++|.......+ +.|++.-|...|.-|+..+|+ +.+.+.++|-+.
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV---~iGD~nlA~rcfrlaL~~d~~--h~ealnNLavL~ 439 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV---TIGDFNLAKRCFRLALTSDAQ--HGEALNNLAVLA 439 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE---eccchHHHHHHHHHHhccCcc--hHHHHHhHHHHH
Confidence 99999999999999999999997655654 789987654444 678999999999999999998 788999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhCCC
Q 002477 635 EDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 635 ~~~g~~~~A~~~y~~al~~~p~ 656 (917)
.+.|+...|+.+|..|....|.
T Consensus 440 ~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hhcCchHHHHHHHHHhhhhCcc
Confidence 9999999999999999999887
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.2e-11 Score=122.70 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 002477 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (917)
Q Consensus 466 ~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~ 545 (917)
.++..+++.|.+.+|.+.++.++...| .+..+..+..++.+..++..|..+|...++..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~---------------------~~dTfllLskvY~ridQP~~AL~~~~~gld~f 286 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP---------------------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSF 286 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC---------------------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcC
Confidence 577888888999999998888886644 46777788888888889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcH
Q 002477 546 IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL-SKFVKRYGKTKLERARELFENAVETAPADAVK 624 (917)
Q Consensus 546 p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl-~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~ 624 (917)
|.+.......|.+++..++.++|.++|.+++++ +|.+.+...... ..| -.+++|-|...|.+.++.--. ++
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yf----Y~~~PE~AlryYRRiLqmG~~--sp 358 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYF----YDNNPEMALRYYRRILQMGAQ--SP 358 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccc----cCCChHHHHHHHHHHHHhcCC--Ch
Confidence 988888888999999999999999999999986 777755322111 112 246788899999998888666 68
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHH
Q 002477 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN-HEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKY 703 (917)
Q Consensus 625 ~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~-~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~ 703 (917)
++|.+.|-+..-.+.++-++..|+||+...-. ....++|-.....+...|++.-|...|.-|+.. .|++. +.+.++
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~h~--ealnNL 435 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQHG--EALNNL 435 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-CcchH--HHHHhH
Confidence 88888888887788888888888888876543 233455544443345678888888888888877 66665 668888
Q ss_pred HHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 704 AELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 704 a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
|-+..+.|+++.||.+|..|... .|.
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~-~P~ 461 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSV-MPD 461 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhh-Ccc
Confidence 88888888888888888888776 664
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=4.8e-12 Score=138.68 Aligned_cols=230 Identities=13% Similarity=0.176 Sum_probs=186.6
Q ss_pred cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcC
Q 002477 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (917)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~ 475 (917)
.|+..+|+-.|+.||+. +| .....|..+|.....+++=..|+..+.+|++++|.+. .+...+|-.+...|
T Consensus 298 nG~L~~A~LafEAAVkq-dP-----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytNeg 367 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQ-DP-----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTNEG 367 (579)
T ss_pred cCCchHHHHHHHHHHhh-Ch-----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhhhh
Confidence 46788999999999976 77 6789999999999999999999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHHHHcC-CChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCHHHH
Q 002477 476 NFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI--ATPQII 552 (917)
Q Consensus 476 ~~~~A~~~l~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p--~~~~~~ 552 (917)
.-..|+..+++=+.. |+..-.+.....+.-.....+. +. ..+....+.|-.+....| .+|.+.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~-~~-------------~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL-DS-------------SHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC-CH-------------HHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 999999999998755 3310000000000000000000 00 123445566777777777 689999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHH
Q 002477 553 INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (917)
Q Consensus 553 ~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~ 632 (917)
..+|.+|.-.|.|++|+..|+.|+.. .|++..+|+.++..+. .+.+.++|...|.+|+++-|. ...+++++|-
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLA---N~~~s~EAIsAY~rALqLqP~--yVR~RyNlgI 506 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLA---NGNRSEEAISAYNRALQLQPG--YVRVRYNLGI 506 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhc---CCcccHHHHHHHHHHHhcCCC--eeeeehhhhh
Confidence 99999999999999999999999996 8999999999987776 566799999999999999999 7899999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 633 LEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 633 ~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
.+...|.+++|.+.|-.||...+.
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999988766
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=2.5e-08 Score=110.95 Aligned_cols=494 Identities=15% Similarity=0.196 Sum_probs=281.6
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~ 159 (917)
...+|.+-.++.+..|..+|.++.-.-+-+-.+-..|+.+.|.....++++.+| .++--|..++-+.+....+ ..|+
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y-~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKY-DEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhH-HHHH
Confidence 455778888888899999999998888888888888999999999999999888 5677899999888888887 8999
Q ss_pred HHHHHHHccCCCCHHHHHH---HHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHH
Q 002477 160 RVYRRYLKYDPSHIEDFIE---FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAI 236 (917)
Q Consensus 160 ~~~~r~l~~~P~~~~~~i~---~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~ 236 (917)
+.|+.+|.++|++...+-. .....++++-... .|..++++
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~---------------------tr~~LLql---------------- 138 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE---------------------TRNQLLQL---------------- 138 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH---------------------HHHHHHHh----------------
Confidence 9999999999998543322 2233333333221 23333222
Q ss_pred HHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhccc---chhchHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 002477 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVV---TVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEE 313 (917)
Q Consensus 237 l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~---~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~ 313 (917)
.|.+ -..|.++|..+.-.|++..|..+.++...+.. ...++. ..
T Consensus 139 -------~~~~-ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e----------~s--------------- 185 (700)
T KOG1156|consen 139 -------RPSQ-RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE----------HS--------------- 185 (700)
T ss_pred -------hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH----------HH---------------
Confidence 2222 24799999999999999999999888877653 222211 00
Q ss_pred cccccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHH
Q 002477 314 EEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVK 393 (917)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~ 393 (917)
+-++. -|.++.+
T Consensus 186 -------------------------------------------------e~~Ly-----~n~i~~E-------------- 197 (700)
T KOG1156|consen 186 -------------------------------------------------ELLLY-----QNQILIE-------------- 197 (700)
T ss_pred -------------------------------------------------HHHHH-----HHHHHHH--------------
Confidence 00000 0000000
Q ss_pred HHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHh
Q 002477 394 IFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473 (917)
Q Consensus 394 l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~ 473 (917)
.+...++.+-... ..|. +-.....-..-|.++.+.+++++|..+|...+..+|++. .-+..+-.....
T Consensus 198 --~g~~q~ale~L~~----~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~----~Yy~~l~~~lgk 265 (700)
T KOG1156|consen 198 --AGSLQKALEHLLD----NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL----DYYEGLEKALGK 265 (700)
T ss_pred --cccHHHHHHHHHh----hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH----HHHHHHHHHHHH
Confidence 0001111111000 0000 000112223446778888999999999999999999887 433333333321
Q ss_pred cCCHHHHH-HHHHHHHcCCChhH-HHhhhhcCCchhhhhh-hccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHH
Q 002477 474 HKNFKGAL-ELMRRATAEPSVEV-RRRVAADGNEPVQMKL-HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (917)
Q Consensus 474 ~~~~~~A~-~~l~~al~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~ 550 (917)
-.+--+++ .+|...-..+|... .+|. |..-.. .+-......|..-..+.| -|.
T Consensus 266 ~~d~~~~lk~ly~~ls~~y~r~e~p~Rl------plsvl~~eel~~~vdkyL~~~l~Kg------------------~p~ 321 (700)
T KOG1156|consen 266 IKDMLEALKALYAILSEKYPRHECPRRL------PLSVLNGEELKEIVDKYLRPLLSKG------------------VPS 321 (700)
T ss_pred HhhhHHHHHHHHHHHhhcCcccccchhc------cHHHhCcchhHHHHHHHHHHHhhcC------------------CCc
Confidence 22222333 56666555444100 0000 000000 001111222222222222 122
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHhhc---cC-------CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 002477 551 IIINYALLLEEHK---YFEDAFRVYERGVKI---FK-------YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (917)
Q Consensus 551 ~~~~~a~~~~~~g---~~e~A~~~~eral~~---f~-------~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~ 617 (917)
++.++-.++..-. -.++-..-|...+.- |. .|...-+|..|.. .......|+++.|....+.||..
T Consensus 322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l-aqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL-AQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH-HHHHHHcccHHHHHHHHHHHhcc
Confidence 3333332222111 001111111111111 10 2556778988753 22333567899999999999999
Q ss_pred CCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchH-
Q 002477 618 APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV- 696 (917)
Q Consensus 618 ~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~- 696 (917)
+|. -.++|+.-|++....|+++.|...++.+-+.+-. ...+-..+..+......+++|.++...-...|. +.+
T Consensus 401 TPT--liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a--DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 401 TPT--LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA--DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred Cch--HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch--hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 999 8999999999999999999999999999887654 223333444555566788888888776655421 111
Q ss_pred -----HHHHHHH--HHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHhHhh
Q 002477 697 -----KAMCLKY--AELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR----WHEFEVNHGNEDTFREMLRIKRSVS 763 (917)
Q Consensus 697 -----~~~~l~~--a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~----~~~fe~~~G~~~~a~~~lr~~r~~~ 763 (917)
--||+.. |..+.++|.+-.|..-|...-+. -.-|.. +..+..+-|+..+..+|++..-.+.
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~------~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~ 546 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH------YKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLR 546 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH------HHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhc
Confidence 1245443 33444555554444333322111 111221 4567888999999999997555544
No 82
>PLN02789 farnesyltranstransferase
Probab=99.41 E-value=1.1e-10 Score=126.47 Aligned_cols=234 Identities=14% Similarity=0.091 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccCCCHHHHH
Q 002477 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG-NLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g-~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
+..++|+.++.+++.++| .+..+|...+.++..+| .++++...+++++..+|.+.++|.
T Consensus 51 e~serAL~lt~~aI~lnP--------------------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 51 ERSPRALDLTADVIRLNP--------------------GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred CCCHHHHHHHHHHHHHCc--------------------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 445677778888887765 46778888888877777 568888888888888888888888
Q ss_pred HHHHHHHHccCH--HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHH
Q 002477 554 NYALLLEEHKYF--EDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631 (917)
Q Consensus 554 ~~a~~~~~~g~~--e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a 631 (917)
..+.++...|.. ++++..+++++.. +|.+..+|.... .++.. .++++++.+.++++|+.+|. +..+|...+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~-w~l~~--l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~ 183 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQ-WVLRT--LGGWEDELEYCHQLLEEDVR--NNSAWNQRY 183 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHH-HHHHH--hhhHHHHHHHHHHHHHHCCC--chhHHHHHH
Confidence 887777777653 6678888888886 788888887543 33333 34588888888888888887 567777777
Q ss_pred HHHHHh---CC----HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH--HhcCcchHHHHHHHHHHhCCCCchHHHHHHH
Q 002477 632 KLEEDY---GL----AKRAMKVYDQATKAVPNHEKLGMYEIYIARAA--EIFGVPKTREIYEQAIESGLPDKDVKAMCLK 702 (917)
Q Consensus 632 ~~e~~~---g~----~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~--~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~ 702 (917)
.+.... |. .++++....+++..+|++...|.|...+.... .++...++...+.++++. .|.+.. +.-.
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~--al~~ 260 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVF--ALSD 260 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHH--HHHH
Confidence 666544 22 24677777888888888888887776665321 123345688888888876 665542 2333
Q ss_pred HHHHHHHcC------------------ChhHHHHHHHHHHccCCCCCCHHHHHHHH
Q 002477 703 YAELEKSLG------------------EIDRARGIYVFASQFADPRSDTEFWNRWH 740 (917)
Q Consensus 703 ~a~le~~~g------------------~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~ 740 (917)
+++++.... ..++|..+++... ..||- ...+|..-+
T Consensus 261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~d~i-r~~yw~~~~ 314 (320)
T PLN02789 261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE-VADPM-RRNYWAWRK 314 (320)
T ss_pred HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH-hhCcH-HHHHHHHHH
Confidence 344443211 3477888888885 44886 678887543
No 83
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=5.1e-09 Score=119.25 Aligned_cols=232 Identities=19% Similarity=0.272 Sum_probs=161.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL-EEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
-...|..|++++...|..-.....+++++...+.++..|+.|+... ...+-...+..++-|++.. +|....+|..|+
T Consensus 311 ~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~--cp~tgdL~~ral 388 (881)
T KOG0128|consen 311 KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS--CPWTGDLWKRAL 388 (881)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC--CchHHHHHHHHH
Confidence 4577888888888888888888888888888888888888888766 3456777788888888885 888888998887
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhhCC------CCChH
Q 002477 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA------KRAMKVYDQATKAVP------NHEKL 660 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~------~~A~~~y~~al~~~p------~~~~~ 660 (917)
- ...| ...........+++++.. ...+++.|..+...+++. +.-++.|.+|....- .+...
T Consensus 389 l-AleR-~re~~~vI~~~l~~~ls~-----~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~ 461 (881)
T KOG0128|consen 389 L-ALER-NREEITVIVQNLEKDLSM-----TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRT 461 (881)
T ss_pred H-HHHh-cCcchhhHHHHHHHHHHH-----HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 3 3333 334456666666666654 233555555555555533 233444444443211 11122
Q ss_pred HHHHHHHHH-HHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc-CCCCCCHHHHHH
Q 002477 661 GMYEIYIAR-AAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF-ADPRSDTEFWNR 738 (917)
Q Consensus 661 ~l~~~~i~~-~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~-~~P~~~~~~w~~ 738 (917)
.+...+... +.-+++.+.+|.++...+.. +...++.+|+.+++++...|+...||.++.+|... .+|...-.+...
T Consensus 462 ~~~q~wA~~E~sl~~nmd~~R~iWn~imty--~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~ 539 (881)
T KOG0128|consen 462 EVLQLWAQVEASLLKNMDKAREIWNFIMTY--GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEF 539 (881)
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhccccC--CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHH
Confidence 221112111 13467899999999998875 45555569999999999999999999999999765 244323488899
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 002477 739 WHEFEVNHGNEDTFREML 756 (917)
Q Consensus 739 ~~~fe~~~G~~~~a~~~l 756 (917)
|..||..+|+.+.+-...
T Consensus 540 ~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 540 FRRFEREYGTLESFDLCP 557 (881)
T ss_pred HHHHHhccccHHHHhhhH
Confidence 999999999999887655
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.4e-09 Score=109.57 Aligned_cols=264 Identities=12% Similarity=0.122 Sum_probs=211.8
Q ss_pred HcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhc
Q 002477 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (917)
Q Consensus 395 ~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~ 474 (917)
..+++++|+..|-+.++ .+| ....+-..+|++|.+.|..+.|+.+-...+..+.-....-..+...++.=++..
T Consensus 47 Ls~Q~dKAvdlF~e~l~-~d~-----~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ-EDP-----ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hhcCcchHHHHHHHHHh-cCc-----hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Confidence 35678899999999885 466 567889999999999999999999998888764433333446777888889999
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-----H
Q 002477 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT-----P 549 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~-----~ 549 (917)
|-++.|..+|...+..+. --......+..+|....+.++|+++-++...+.+.+ .
T Consensus 121 Gl~DRAE~~f~~L~de~e--------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA 180 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE--------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA 180 (389)
T ss_pred hhhhHHHHHHHHHhcchh--------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence 999999999999887654 134566678888999999999999999999988765 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHH
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~ 629 (917)
+.+..+|.-+....+++.|+..+.+|+.. +|++...=...+.... ..|+++.|.+.++.+++.+|.- -..+.-.
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~---~~g~y~~AV~~~e~v~eQn~~y-l~evl~~ 254 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVEL---AKGDYQKAVEALERVLEQNPEY-LSEVLEM 254 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHH---hccchHHHHHHHHHHHHhChHH-HHHHHHH
Confidence 56778888888889999999999999996 8887654444343333 5688999999999999999973 4567778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCc
Q 002477 630 YAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 630 ~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~ 694 (917)
+...|.+.|........+.++.+..+......+..-++ ....|.+.|.....+-+.. .|.-
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~li---e~~~G~~~Aq~~l~~Ql~r-~Pt~ 315 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLI---ELQEGIDAAQAYLTRQLRR-KPTM 315 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHH---HHhhChHHHHHHHHHHHhh-CCcH
Confidence 88899999999999999999999998865554444444 3567888888888888887 6743
No 85
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.36 E-value=7.1e-12 Score=134.28 Aligned_cols=141 Identities=26% Similarity=0.507 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE-HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~-~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~ 594 (917)
-+|..|..+..+.+..+.||.+|.++++..+.+..+|..+|.++.. .++.+.|.++||+|++. +|.+..+|..|+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 4799999999999999999999999997777789999999999888 56667799999999997 78899999999987
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCcCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHH
Q 002477 595 FVKRYGKTKLERARELFENAVETAPADA-VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (917)
Q Consensus 595 ~~~~~~~~~~e~Ar~lfe~al~~~p~~~-~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~ 661 (917)
+. ..++.+.||.+|++++...|.+. ...+|..|..||.+.|+.+...++++|+.+..|....+.
T Consensus 80 l~---~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 80 LI---KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HH---HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HH---HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 76 35789999999999999999876 678999999999999999999999999999999866554
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.3e-09 Score=114.94 Aligned_cols=234 Identities=19% Similarity=0.151 Sum_probs=136.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCc
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 505 (917)
...+|....+..+++.|.+-|.+++..+ ... ......+-.+...|.+...+..-..++...... +..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~i----t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~--rad------ 293 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDI----TYLNNIAAVYLERGKYAECIELCEKAVEVGREL--RAD------ 293 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhh----HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH--HHH------
Confidence 3566777777888999999999999988 666 666777777777787777777777766542200 000
Q ss_pred hhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 506 ~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
...-.......+..+...++++.|+..|.+++...- +| ..+-+.+..+++.+..++..-+ .|...
T Consensus 294 -----~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R-t~-------~~ls~lk~~Ek~~k~~e~~a~~--~pe~A 358 (539)
T KOG0548|consen 294 -----YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR-TP-------DLLSKLKEAEKALKEAERKAYI--NPEKA 358 (539)
T ss_pred -----HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-CH-------HHHHHHHHHHHHHHHHHHHHhh--ChhHH
Confidence 000011111123344445667777777777665432 22 2333334445555555554443 44432
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHH
Q 002477 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665 (917)
Q Consensus 586 ~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~ 665 (917)
.--..-+ ...+..+++..|...|.+||...|+ +..+|.+.|-++.+.|.+.+|++-.+.+++++|+..+.++..+
T Consensus 359 ~e~r~kG---ne~Fk~gdy~~Av~~YteAIkr~P~--Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 359 EEEREKG---NEAFKKGDYPEAVKHYTEAIKRDPE--DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred HHHHHHH---HHHHhccCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 2221111 1222446677777777777777777 6677777777777777777777777777777776555555554
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhCCCCch
Q 002477 666 YIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (917)
Q Consensus 666 ~i~~~~~~~~~~~ar~~ye~al~~~~p~~~ 695 (917)
.+.. .+.++++|...|+++++. .|.+.
T Consensus 434 ~al~--~mk~ydkAleay~eale~-dp~~~ 460 (539)
T KOG0548|consen 434 AALR--AMKEYDKALEAYQEALEL-DPSNA 460 (539)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhc-CchhH
Confidence 4442 345666677777777766 55443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=2.3e-09 Score=120.20 Aligned_cols=310 Identities=14% Similarity=0.021 Sum_probs=181.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
++...|...|.++...|+.+.|...+.++.+..+.+.+ ........+......|++++|..++++++...|
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-------- 74 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-ERERAHVEALSAWIAGDLPKALALLEQLLDDYP-------- 74 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------
Confidence 45666777777777777777777777777776665542 223444556666677777777777777776544
Q ss_pred hcCCchhhhhhhccHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 501 ADGNEPVQMKLHKSLRLWTF---YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~---~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
.+...|.. +.......+..+.+..++.......|..+..+..+|.++...|++++|...+++++.
T Consensus 75 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 75 ------------RDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred ------------CcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23344442 222222234445555555543344555556666777778888888888888888888
Q ss_pred ccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002477 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA--VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (917)
Q Consensus 578 ~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~--~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p 655 (917)
+ .|++..++..+...+. ..|++++|+..|++++...|... ....|..++.++...|++++|+.+|++++...|
T Consensus 143 ~--~p~~~~~~~~la~i~~---~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 143 L--NPDDAWAVHAVAHVLE---MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred h--CCCCcHHHHHHHHHHH---HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 6 6766555554443333 45678888888888887766321 124566788888888888888888888876555
Q ss_pred CCChH-HHHHH-HHHHHHH-hcCcchHHHHHHHHHHh---CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 002477 656 NHEKL-GMYEI-YIARAAE-IFGVPKTREIYEQAIES---GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADP 729 (917)
Q Consensus 656 ~~~~~-~l~~~-~i~~~~~-~~~~~~ar~~ye~al~~---~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P 729 (917)
..... .+... .+..... .+....+..+ +.+... ..|.....-.....+......|+.+.|..+++........
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 218 ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 32221 22111 1111112 2323333332 222221 0122111122345677778889999999999888765322
Q ss_pred ---CC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 730 ---RS----DTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 730 ---~~----~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
.. ...+.....-.....|+.++|.+.|.
T Consensus 297 ~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 297 ADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred cCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 10 11222223334557899999988884
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.4e-10 Score=127.42 Aligned_cols=255 Identities=13% Similarity=0.133 Sum_probs=206.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 002477 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (917)
Q Consensus 467 ~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p 546 (917)
-+...+++|.+.+|.-.|+.|+...| .....|..++-.....++-..|+.+++++++++|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP--------------------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP 350 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDP--------------------QHAEAWQKLGITQAENENEQNAISALRRCLELDP 350 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhCh--------------------HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence 35556899999999999999998765 4789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHhCC
Q 002477 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR-------YGKTKLERARELFENAVETAP 619 (917)
Q Consensus 547 ~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~-------~~~~~~e~Ar~lfe~al~~~p 619 (917)
.+-.+...+|..|...|.-..|++.+..-|.. .|.. .|+.... -... .+...+.+...+|-.+....|
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~--~p~y--~~l~~a~-~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRN--KPKY--VHLVSAG-ENEDFENTKSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--Cccc--hhccccC-ccccccCCcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985 4432 1221100 0000 011246788889999998999
Q ss_pred cCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHH
Q 002477 620 ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699 (917)
Q Consensus 620 ~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~ 699 (917)
...++++...+|-++.-.|++++|+..|+.||+..|++ ..+|+.+..........++|+..|.+|++. .|... .+
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yV--R~ 500 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYV--RV 500 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCee--ee
Confidence 66589999999999999999999999999999999994 456777776656667789999999999999 89876 66
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHccCCC----C----CCHHHHHHHHHHHHHcCCHHH
Q 002477 700 CLKYAELEKSLGEIDRARGIYVFASQFADP----R----SDTEFWNRWHEFEVNHGNEDT 751 (917)
Q Consensus 700 ~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P----~----~~~~~w~~~~~fe~~~G~~~~ 751 (917)
+..+|--+..+|.+.+|...|-.|+.+..- . .+..+|.++..+.+..+..|-
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 888888889999999999999999988311 1 123688877777666666654
No 89
>PLN02789 farnesyltranstransferase
Probab=99.34 E-value=3.3e-10 Score=122.73 Aligned_cols=209 Identities=13% Similarity=0.107 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCChhHHHhhhh
Q 002477 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAA 501 (917)
Q Consensus 423 ~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~-~~~~A~~~l~~al~~~~~~~~~~~~~ 501 (917)
..+|--+-.++...+..++|...+.++++.+|.+. .+|...+.+....+ .+++++..+++++..+|
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--------- 103 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEALDADLEEELDFAEDVAEDNP--------- 103 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---------
Confidence 34444444455566777888888888888888887 88888887777776 57888888888887755
Q ss_pred cCCchhhhhhhccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNL--ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 502 ~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~--~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
++..+|...+.+....|.. +.+...++++++.+|.+..+|...+.++...|.+++++..++++|+.
T Consensus 104 -----------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~- 171 (320)
T PLN02789 104 -----------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE- 171 (320)
T ss_pred -----------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-
Confidence 5777888887777777753 67788888888888888888888888888888888888888888886
Q ss_pred CCCChHHHHHHHHHHHHHHhC-CC----ChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHH
Q 002477 580 KYPHVKDIWVTYLSKFVKRYG-KT----KLERARELFENAVETAPADAVKPLYLQYAKLEEDY----GLAKRAMKVYDQA 650 (917)
Q Consensus 580 ~~P~~~~lw~~yl~~~~~~~~-~~----~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~----g~~~~A~~~y~~a 650 (917)
+|.+..+|+... ......+ .+ ..+++.+...++|...|. +..+|..++.++... +...+|...+.++
T Consensus 172 -d~~N~sAW~~R~-~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~--N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 172 -DVRNNSAWNQRY-FVITRSPLLGGLEAMRDSELKYTIDAILANPR--NESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred -CCCchhHHHHHH-HHHHhccccccccccHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 788888887543 2222210 01 135677777788888888 567888887777762 3446688888888
Q ss_pred HhhCCCCChH
Q 002477 651 TKAVPNHEKL 660 (917)
Q Consensus 651 l~~~p~~~~~ 660 (917)
++..|.+...
T Consensus 248 ~~~~~~s~~a 257 (320)
T PLN02789 248 LSKDSNHVFA 257 (320)
T ss_pred hcccCCcHHH
Confidence 8777765543
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.3e-09 Score=115.81 Aligned_cols=451 Identities=15% Similarity=0.110 Sum_probs=234.5
Q ss_pred CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhH
Q 002477 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (917)
Q Consensus 79 ~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a 158 (917)
...++|+.+..+|-.|+.+.|.+.-++..-...+..+++++.|..--.++++.+| +-+..|...+.-..-.|.. ++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p--~w~kgy~r~Gaa~~~lg~~-~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP--DWAKGYSRKGAALFGLGDY-EEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC--chhhHHHHhHHHHHhcccH-HHH
Confidence 4778999999999999999999999998888888999999999999999999999 4566666666666667888 999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHH
Q 002477 159 LRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (917)
Q Consensus 159 ~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~ 238 (917)
+..|...|+.+|++...+ .-+......+.+. .+.... ..+|..+...-..... +....+.. +-
T Consensus 90 ~~ay~~GL~~d~~n~~L~-~gl~~a~~~~~~~---~~~~~~-----------p~~~~~l~~~p~t~~~-~~~~~~~~-~l 152 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLK-TGLAQAYLEDYAA---DQLFTK-----------PYFHEKLANLPLTNYS-LSDPAYVK-IL 152 (539)
T ss_pred HHHHHHHhhcCCchHHHH-HhHHHhhhHHHHh---hhhccC-----------cHHHHHhhcChhhhhh-hccHHHHH-HH
Confidence 999999999999985322 1121111111111 111111 1233333211110000 00000111 11
Q ss_pred hhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCcccccccc
Q 002477 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (917)
Q Consensus 239 ~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~ 318 (917)
..+++.|.+. .++ ..-..+.+|.-++...-.. .|. ...........+...+
T Consensus 153 ~~~~~~p~~l-~~~-------l~d~r~m~a~~~l~~~~~~---------------~~~----~~~~~~~~~~~~p~~~-- 203 (539)
T KOG0548|consen 153 EIIQKNPTSL-KLY-------LNDPRLMKADGQLKGVDEL---------------LFY----ASGIEILASMAEPCKQ-- 203 (539)
T ss_pred HHhhcCcHhh-hcc-------cccHHHHHHHHHHhcCccc---------------ccc----ccccccCCCCCCcccc--
Confidence 2222222221 011 0111112221111110000 000 0000000000000000
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHHcCC
Q 002477 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGN 398 (917)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~~~~ 398 (917)
+.. ++-... .....+. ..... ....-+..+..-+.+
T Consensus 204 ~~~------------------------~~~~~~-d~~ee~~----~k~~a---------------~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 204 EHN------------------------GFPIIE-DNTEERR----VKEKA---------------HKEKELGNAAYKKKD 239 (539)
T ss_pred cCC------------------------CCCccc-hhHHHHH----HHHhh---------------hHHHHHHHHHHHhhh
Confidence 000 000000 0000000 00000 000112222223456
Q ss_pred chHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhh---HHHHHHHHHHHHhcC
Q 002477 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL---ASIWCEWAEMELRHK 475 (917)
Q Consensus 399 ~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l---~~~w~~~a~~e~~~~ 475 (917)
+..+++-|..++.. + .........|..|...|.+...+...++++++......+. +......+..+...+
T Consensus 240 f~~a~q~y~~a~el-~------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 240 FETAIQHYAKALEL-A------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HHHHHHHHHHHHhH-h------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77788889888864 2 3567788889999999999999999999888765433221 122222333555667
Q ss_pred CHHHHHHHHHHHHcCCC--hhHHHhhhhcCCchhh----hhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCH
Q 002477 476 NFKGALELMRRATAEPS--VEVRRRVAADGNEPVQ----MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (917)
Q Consensus 476 ~~~~A~~~l~~al~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~ 549 (917)
+++.|+..|.+++.... ..++.....+...+.+ ...|.-..--..-++-..+.|++..|...|.++|..+|+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 89999999999886422 1111111111111100 00111111222224445566777777777777777777777
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHH
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~ 629 (917)
..|.|.|.++...|.+..|++-.+.++++ +|+....|..-+..+. ...+++.|.+.|..+++.+|. +..+.-.
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~---~mk~ydkAleay~eale~dp~--~~e~~~~ 465 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALR---AMKEYDKALEAYQEALELDPS--NAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCch--hHHHHHH
Confidence 77777777777777777777777777775 6666555444322211 334566777777777776666 4555555
Q ss_pred HHHHHHH
Q 002477 630 YAKLEED 636 (917)
Q Consensus 630 ~a~~e~~ 636 (917)
|.++...
T Consensus 466 ~~rc~~a 472 (539)
T KOG0548|consen 466 YRRCVEA 472 (539)
T ss_pred HHHHHHH
Confidence 5554443
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.6e-09 Score=122.36 Aligned_cols=248 Identities=20% Similarity=0.262 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
.+...++.++...|+++.|..++++|+..-. ...|.. .+.-......++.++...+.+++|..+|+++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~-------k~~G~~-----hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILE-------KTSGLK-----HLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-------HccCcc-----CHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6666799999999999999999999986510 011100 0111223335889999999999999999999
Q ss_pred Hhcc-----CCCH---HHHHHHHHHHHHccCHHHHHHHHHHHhhccCC---CChHHHHHHH--HHHHHHHhCCCChHHHH
Q 002477 542 LDLR-----IATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFKY---PHVKDIWVTY--LSKFVKRYGKTKLERAR 608 (917)
Q Consensus 542 l~~~-----p~~~---~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~---P~~~~lw~~y--l~~~~~~~~~~~~e~Ar 608 (917)
+... +.+| .+++++|.+|...|+|++|...+++|+.++.. ....++-..+ +..... ..++++.|.
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--~~~~~Eea~ 345 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--SMNEYEEAK 345 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--HhcchhHHH
Confidence 9873 3344 57899999999999999999999999998532 2222222222 222222 356799999
Q ss_pred HHHHHHHHhC---CcCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-----C--hHHHHHHHHHHHHHhcC
Q 002477 609 ELFENAVETA---PADA---VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-----E--KLGMYEIYIARAAEIFG 675 (917)
Q Consensus 609 ~lfe~al~~~---p~~~---~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~-----~--~~~l~~~~i~~~~~~~~ 675 (917)
.++.++++.. |... -..++.++|.++...|.+.+|..+|++|++..-.. . ..-+|..-..+ .+.+.
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~ 424 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKK 424 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcc
Confidence 9999998762 2221 35689999999999999999999999999876221 1 12344433333 56778
Q ss_pred cchHHHHHHHHHHhC---CCCc-hHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 002477 676 VPKTREIYEQAIESG---LPDK-DVKAMCLKYAELEKSLGEIDRARGIYVFAS 724 (917)
Q Consensus 676 ~~~ar~~ye~al~~~---~p~~-~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~ 724 (917)
+..|-.+|.+++... -|++ .+...+..++.++...|+++.|..+-++++
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 888888888877650 1332 445678889999999999999999888887
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=2.8e-08 Score=102.20 Aligned_cols=288 Identities=13% Similarity=0.100 Sum_probs=220.0
Q ss_pred HHhhCCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 002477 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (917)
Q Consensus 377 ~L~~nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~ 454 (917)
.+..+|++..+...|+..|. |...-++.-+.+.+.. .| .+....+.-|.+..++|.++.|..-|...|+.+|
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-Kp-----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~ 137 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KP-----DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP 137 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-Cc-----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence 56789999999999999885 6666788888888854 55 5777888899999999999999999999999998
Q ss_pred CChhhh------H---HHHHH--HHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHH
Q 002477 455 KTVDHL------A---SIWCE--WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (917)
Q Consensus 455 ~~~~~l------~---~~w~~--~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 523 (917)
++-..+ + ..|.. .+.-..-.|+...|+......+.+.| =...++...+.
T Consensus 138 s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~--------------------Wda~l~~~Rak 197 (504)
T KOG0624|consen 138 SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP--------------------WDASLRQARAK 197 (504)
T ss_pred CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc--------------------chhHHHHHHHH
Confidence 653211 0 11111 11123456788888888888888765 25678888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHH--HHHHHH----
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY--LSKFVK---- 597 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~y--l~~~~~---- 597 (917)
++...|.+..|+.-+..+-.+..++...++..+.++...|+.+.++.....++++ +|+...-+-.| +.+.+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 78764433333 122221
Q ss_pred ---HhCCCChHHHHHHHHHHHHhCCcCCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 002477 598 ---RYGKTKLERARELFENAVETAPADAV--KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE 672 (917)
Q Consensus 598 ---~~~~~~~e~Ar~lfe~al~~~p~~~~--~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~ 672 (917)
....+.+-.+.+..++.++..|.... ...+-.+..++..-|.+.+|++...+++...|++... +.-....+..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~--l~dRAeA~l~ 353 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQV--LCDRAEAYLG 353 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHH--HHHHHHHHhh
Confidence 22456788888899999999887311 2234445666777899999999999999999985433 2222232234
Q ss_pred hcCcchHHHHHHHHHHhCCCCch
Q 002477 673 IFGVPKTREIYEQAIESGLPDKD 695 (917)
Q Consensus 673 ~~~~~~ar~~ye~al~~~~p~~~ 695 (917)
.-.++.|+.-|++|.+. .+++.
T Consensus 354 dE~YD~AI~dye~A~e~-n~sn~ 375 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALEL-NESNT 375 (504)
T ss_pred hHHHHHHHHHHHHHHhc-CcccH
Confidence 45688999999999999 77665
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=7.5e-09 Score=116.10 Aligned_cols=313 Identities=11% Similarity=-0.009 Sum_probs=202.7
Q ss_pred CCCCHHHHHHHHHHHc--CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChh
Q 002477 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (917)
Q Consensus 381 nP~~~~~w~~~~~l~~--~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~ 458 (917)
+|+.+..|..++.++. +++..+...|.++.+.. |.. ..........+..+...|+++.|...+++++..+|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AAR--ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-
Confidence 6888888877777664 66777778888877553 322 13445666778888899999999999999999999887
Q ss_pred hhHHHHHHHHHHHH----hcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHH
Q 002477 459 HLASIWCEWAEMEL----RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (917)
Q Consensus 459 ~l~~~w~~~a~~e~----~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A 534 (917)
.++.. +.... ..+....+...+...... .|.....+..++.++...|+++.|
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~a~~~~~~G~~~~A 133 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE--------------------NPDYWYLLGMLAFGLEEAGQYDRA 133 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhccCcC--------------------CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 55542 22222 234455555555442222 224556666778899999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH----HHHHHHHHHHHHHhCCCChHHHHHH
Q 002477 535 RAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK----DIWVTYLSKFVKRYGKTKLERAREL 610 (917)
Q Consensus 535 ~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~----~lw~~yl~~~~~~~~~~~~e~Ar~l 610 (917)
...|++++++.|.++.++..+|.++.+.|++++|...+++++.. .|... ..|........ ..|++++|..+
T Consensus 134 ~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~--~~~~~~~~~~~~~~la~~~~---~~G~~~~A~~~ 208 (355)
T cd05804 134 EEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT--WDCSSMLRGHNWWHLALFYL---ERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc--cCCCcchhHHHHHHHHHHHH---HCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999997 43221 22322222222 56899999999
Q ss_pred HHHHHHhCCcCCcHHHHHHH---HHHHHHhCCHHHHHHH---HHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHH
Q 002477 611 FENAVETAPADAVKPLYLQY---AKLEEDYGLAKRAMKV---YDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYE 684 (917)
Q Consensus 611 fe~al~~~p~~~~~~l~~~~---a~~e~~~g~~~~A~~~---y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye 684 (917)
|++++...|........+.. .......|....+... ........|..................++.+.|..+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998766621122111122 1122224432222222 22222221221111111122223345677888999998
Q ss_pred HHHHhCCC---Cch---HHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 685 QAIESGLP---DKD---VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 685 ~al~~~~p---~~~---~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
.+...... ... ...+.+..+..+...|+.+.|...+..++..
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88764111 111 1234455666778999999999999999876
No 94
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.26 E-value=3.2e-11 Score=129.27 Aligned_cols=137 Identities=25% Similarity=0.463 Sum_probs=117.5
Q ss_pred HHHHHHHHHH-HhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHH
Q 002477 28 KLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWI 106 (917)
Q Consensus 28 ~~W~~yi~~~-~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~ 106 (917)
-.|+.|+++. +....+.++.+|++|++..+..+.+|..++.++.. ..++.+.|..+||++|+.+|.++.+|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-------~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-------CNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-------TCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3799999864 45568889999999997777789999999988742 345677899999999999999999999
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC
Q 002477 107 MYLETLTSQKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (917)
Q Consensus 107 ~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~-~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~ 172 (917)
.|+.|++..++++.||.+|+|++..+|... ...||..|+.|+...|+. +.+..+++|+.+..|+.
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-ESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-HHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999655 568999999999999987 99999999999999885
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=4.3e-08 Score=109.12 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=55.3
Q ss_pred HHHHHH--HHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhH
Q 002477 698 AMCLKY--AELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPE 775 (917)
Q Consensus 698 ~~~l~~--a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~ 775 (917)
-+|..| +.-.-..|+++.|..+.+.|+.. -|. -.+++..-..+....|+.++|-..+.-.|+++.+-.-++..-|.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-Cch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 445433 44456789999999999999988 464 56777777788888899999999998777777653233333344
Q ss_pred H
Q 002477 776 Y 776 (917)
Q Consensus 776 ~ 776 (917)
+
T Consensus 448 Y 448 (700)
T KOG1156|consen 448 Y 448 (700)
T ss_pred H
Confidence 3
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=4.9e-09 Score=118.60 Aligned_cols=256 Identities=17% Similarity=0.205 Sum_probs=186.0
Q ss_pred CCCCHHHHHHHHHHH--cCCchHHHHHHHHHHhccCCCcc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--
Q 002477 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKA--VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY-- 454 (917)
Q Consensus 381 nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~--~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~-- 454 (917)
.|.-.......+..| .+++++|+..|+.|++.+--.+. .......-..+|.+|...+++.+|..+|++||.+.-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 455444555556655 47899999999999976311000 012233445699999999999999999999998532
Q ss_pred --CChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHH
Q 002477 455 --KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLE 532 (917)
Q Consensus 455 --~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~ 532 (917)
...+..+.++..++.++...|.+.+|...+++|+.+-.. ..+. ..+.-.......+.++...+.++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-------~~~~-----~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-------LLGA-----SHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-------hhcc-----ChHHHHHHHHHHHHHHHHhcchh
Confidence 222455688999999999999999999999999865220 0000 01223455666777888899999
Q ss_pred HHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC------CCC-hHHHHHHHHHHHHH
Q 002477 533 STRAVYERILDLR--------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK------YPH-VKDIWVTYLSKFVK 597 (917)
Q Consensus 533 ~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~------~P~-~~~lw~~yl~~~~~ 597 (917)
.|..+|.+++++- |..+.++.++|.++...|++++|...|+++|.... ++. ...+|+.-. ..
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~--~~- 419 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE--AY- 419 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH--HH-
Confidence 9999999998862 23456899999999999999999999999999741 222 235665422 22
Q ss_pred HhCCCChHHHHHHHHHHHHhC----CcC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002477 598 RYGKTKLERARELFENAVETA----PAD-AVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (917)
Q Consensus 598 ~~~~~~~e~Ar~lfe~al~~~----p~~-~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~ 652 (917)
+..+++.+|-.+|..++... |.. .....|.+++.+|..+|+++.|..+.++++.
T Consensus 420 -~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 420 -EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 24567888999999988652 222 1467899999999999999999999998874
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=3.5e-09 Score=126.23 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=186.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChh-----H
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE-----V 495 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~-----~ 495 (917)
.+...|..++..|...|++++|..+.+.+++.+|..+ .+|...|-++.+.++++.+.-+ +++...+.. +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 5778899999888888999999999999998888888 8888888888888888888777 665543210 0
Q ss_pred HHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 002477 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575 (917)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~era 575 (917)
..... .....+.+..+...++.++.+.|..++|..+|+++++++|.++.+..+||.++... ++++|...+.+|
T Consensus 103 e~~~~------~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 103 EHICD------KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHH------HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 00000 11123445568889999999999999999999999999999999999999999999 999999999999
Q ss_pred hhccC---CCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002477 576 VKIFK---YPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT 651 (917)
Q Consensus 576 l~~f~---~P~-~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al 651 (917)
+..+- .+. ..++|..|+.. ...+.+.-..+.++.+...-......++.-+-..+...+++++++.+++.++
T Consensus 176 V~~~i~~kq~~~~~e~W~k~~~~-----~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 176 IYRFIKKKQYVGIEEIWSKLVHY-----NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred HHHHHhhhcchHHHHHHHHHHhc-----CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 98742 122 24677766532 2233444444444444433322234556666666777889999999999999
Q ss_pred hhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 652 KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 652 ~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
...|.+... ....+..+. +.+.. ...++.+++. ..+...-..+..|...|++-+.+ +|.
T Consensus 251 ~~~~~n~~a--~~~l~~~y~--~kY~~-~~~~ee~l~~--------------s~l~~~~~~~~~~i~~fek~i~f-~~G 309 (906)
T PRK14720 251 EHDNKNNKA--REELIRFYK--EKYKD-HSLLEDYLKM--------------SDIGNNRKPVKDCIADFEKNIVF-DTG 309 (906)
T ss_pred hcCCcchhh--HHHHHHHHH--HHccC-cchHHHHHHH--------------hccccCCccHHHHHHHHHHHeee-cCC
Confidence 999985432 222332222 11111 4455555554 22222223456777777777776 554
No 98
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.14 E-value=7.8e-10 Score=120.80 Aligned_cols=116 Identities=25% Similarity=0.380 Sum_probs=99.3
Q ss_pred CcchHHHHHHhhCCCChHHHHHHHHHHHhCC-------------hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCC
Q 002477 11 EDDLLYEEELLRNPFSLKLWWRYLVAKREAP-------------FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNL 77 (917)
Q Consensus 11 ~~~~~~E~~l~~~P~~~~~W~~yi~~~~~~~-------------~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~ 77 (917)
.+...|++.|..||.|+++|++|+++..... .+....+|||||+.+|++.+||..|+....+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----- 77 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----- 77 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Confidence 3567899999999999999999999864321 2456789999999999999999999999752
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhCCC
Q 002477 78 PITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ---KFITKARRTFDRALCALPV 134 (917)
Q Consensus 78 ~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~---~~~~~ar~~~~rAL~~~P~ 134 (917)
.-+-+.+.+.++++|..+|+++.+|..|+.|.... ..++..+.+|.+||+.+..
T Consensus 78 ---~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 78 ---VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred ---hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 23567888999999999999999999999998763 3689999999999999884
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=4.2e-09 Score=106.63 Aligned_cols=128 Identities=7% Similarity=0.071 Sum_probs=114.0
Q ss_pred cCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHH
Q 002477 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607 (917)
Q Consensus 528 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~A 607 (917)
.++.+++...+++++..+|+++..|..+|..+...|++++|...|++++.+ .|++..++..|...+....+....++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 466789999999999999999999999999999999999999999999998 899999999887644332222236999
Q ss_pred HHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCCh
Q 002477 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 608 r~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~ 659 (917)
+.+|+++++..|. +..++..+|..+.+.|++++|+..|+++++..|.+..
T Consensus 130 ~~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999 7899999999999999999999999999999987543
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.8e-05 Score=86.37 Aligned_cols=446 Identities=14% Similarity=0.130 Sum_probs=246.1
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCC--CchH-HHHHHHHHHHHcCCChH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVT--QHDR-IWEIYLRFVEQEGIPIE 156 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~--~~~~-iw~~y~~~~~~~~~~~~ 156 (917)
..++|++|..+..+.|...|+.+.....-+-.+++...+++|..+.+ ..+.. .+.- +-..|+.| +.+.+ +
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik----k~~~~~~~~~~~fEKAYc~Y--rlnk~-D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK----KNGALLVINSFFFEKAYCEY--RLNKL-D 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH----hcchhhhcchhhHHHHHHHH--HcccH-H
Confidence 78899999999999999999999997777777888888888875543 34421 1111 23455555 45665 8
Q ss_pred hHHHHHHHHHccCCC-CHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhccccccccccHHH
Q 002477 157 TSLRVYRRYLKYDPS-HIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDA 235 (917)
Q Consensus 157 ~a~~~~~r~l~~~P~-~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~ 235 (917)
.|...+. .+...+. -.+-..+++.+.|+|++|..+|+.++.+.. .....++-..+..... .+.+.
T Consensus 97 ealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-----dd~d~~~r~nl~a~~a-------~l~~~- 162 (652)
T KOG2376|consen 97 EALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-----DDQDEERRANLLAVAA-------ALQVQ- 162 (652)
T ss_pred HHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHH-------hhhHH-
Confidence 9999888 3333333 245566799999999999999999985421 1111122222221111 01111
Q ss_pred HHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 002477 236 IIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEE 315 (917)
Q Consensus 236 ~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~ 315 (917)
..+.+...|+..-++.+..|-.++..|+|.+|..+++.++..+... +. +++
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~------------------------l~---~~d- 213 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK------------------------LE---DED- 213 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh------------------------hc---ccc-
Confidence 2222333344445677888889999999999999999988754221 00 000
Q ss_pred cccccCCcchhhhHhhhhhhHHHHHHHHhcccccCccchHHHHHHHHHHhhhhchhhhhhhHHhhCCCCHHHHHHHHHHH
Q 002477 316 DDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF 395 (917)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~~~L~~nP~~~~~w~~~~~l~ 395 (917)
. + +.++
T Consensus 214 ------~---------------------------~-eEei---------------------------------------- 219 (652)
T KOG2376|consen 214 ------T---------------------------N-EEEI---------------------------------------- 219 (652)
T ss_pred ------c---------------------------c-hhhH----------------------------------------
Confidence 0 0 0000
Q ss_pred cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcC
Q 002477 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (917)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~ 475 (917)
+. .++ .+-..+|-++...|+-++|..+|...++.+|.+...++.+-..+..+-..+.
T Consensus 220 -----------e~---el~---------~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 220 -----------EE---ELN---------PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred -----------HH---HHH---------HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccc
Confidence 00 011 2334555567778999999999999999888775333333322322211111
Q ss_pred CHH-HHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHH
Q 002477 476 NFK-GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (917)
Q Consensus 476 ~~~-~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~ 554 (917)
-++ .++..++..... ....|... ... ..-..++.|
T Consensus 277 ~~d~~~l~~k~~~~~~-----------------------l~~~~l~~-------------------Ls~--~qk~~i~~N 312 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFK-----------------------LAEFLLSK-------------------LSK--KQKQAIYRN 312 (652)
T ss_pred cCchHHHHHHHHHHHH-----------------------hHHHHHHH-------------------HHH--HHHHHHHHH
Confidence 111 111111111110 11111110 000 011235566
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhccCCCCh-HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHH
Q 002477 555 YALLLEEHKYFEDAFRVYERGVKIFKYPHV-KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633 (917)
Q Consensus 555 ~a~~~~~~g~~e~A~~~~eral~~f~~P~~-~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~ 633 (917)
.+.+..-.|..+.+.+...+.-.. .|.. ..+...-..+.. . ....+|..++.++-+..|.+ +..+.+..+++
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~---~-~~~~ka~e~L~~~~~~~p~~-s~~v~L~~aQl 385 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASLPGM--SPESLFPILLQEATKVR---E-KKHKKAIELLLQFADGHPEK-SKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHH---H-HHHhhhHHHHHHHhccCCch-hHHHHHHHHHH
Confidence 666666666666666655554432 4544 233222222111 1 25788999999999999985 57888999999
Q ss_pred HHHhCCHHHHHHHHHHHH--------hhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh---CCCCc-hHHHHHH
Q 002477 634 EEDYGLAKRAMKVYDQAT--------KAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES---GLPDK-DVKAMCL 701 (917)
Q Consensus 634 e~~~g~~~~A~~~y~~al--------~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~---~~p~~-~~~~~~l 701 (917)
...+|+++.|+.++...+ ...- .| .+-........+.++.+.|..++..||.. ..+.+ ....++-
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAKH-LP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-Ch--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 999999999999998333 1110 01 11111122223344444455555555543 11111 1112334
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 702 KYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 702 ~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
..+.++.+.|..+.|...++..++.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh
Confidence 4455555556666666666666655
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.07 E-value=4.2e-09 Score=101.01 Aligned_cols=124 Identities=12% Similarity=-0.037 Sum_probs=85.7
Q ss_pred HHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHH
Q 002477 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (917)
Q Consensus 404 ~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~ 483 (917)
..|+++++ ++| ..|..+|..+...|++++|...|.+++..+|.+. .+|..+|.+..+.|++++|+..
T Consensus 14 ~~~~~al~-~~p--------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 14 DILKQLLS-VDP--------ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHH-cCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHH
Confidence 45666663 344 2355667777777777777777777777777776 7777777777777777777777
Q ss_pred HHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 002477 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (917)
Q Consensus 484 l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~ 560 (917)
|++++...| .++..|..++.++...|++++|+..|++++.+.|.++..|.+.+....
T Consensus 81 y~~Al~l~p--------------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 81 YGHALMLDA--------------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHhcCC--------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 777776644 366677777777777777777777777777777777777766665543
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=1.3e-08 Score=106.99 Aligned_cols=195 Identities=12% Similarity=-0.008 Sum_probs=118.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
.....++..|..+...|+++.|...|++++...|.++ .....|+..+..+...|++++|+..|++++...|.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------- 102 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN------- 102 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------
Confidence 4667788888888888888888888888888777653 12246677777777778888888888887765430
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESL--------GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~--------g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~ 572 (917)
.+.....|...+.++... |+++.|...|++++..+|.++..+..+..+....+.
T Consensus 103 ----------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-------- 164 (235)
T TIGR03302 103 ----------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-------- 164 (235)
T ss_pred ----------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH--------
Confidence 111222455556655543 556667777777777666665554333222111000
Q ss_pred HHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002477 573 ERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD-AVKPLYLQYAKLEEDYGLAKRAMKVYDQAT 651 (917)
Q Consensus 573 eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~-~~~~l~~~~a~~e~~~g~~~~A~~~y~~al 651 (917)
+. .. .. .+..+. +..|++.+|...|+++++..|+. ....++..++..+...|++++|..+++...
T Consensus 165 ---~~------~~--~~-~~a~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 165 ---LA------GK--EL-YVARFY--LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred ---HH------HH--HH-HHHHHH--HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 00 00 011111 13456777777777777776653 235677777777777777777777776666
Q ss_pred hhCC
Q 002477 652 KAVP 655 (917)
Q Consensus 652 ~~~p 655 (917)
..+|
T Consensus 231 ~~~~ 234 (235)
T TIGR03302 231 ANYP 234 (235)
T ss_pred hhCC
Confidence 5554
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.06 E-value=5.2e-09 Score=100.41 Aligned_cols=120 Identities=12% Similarity=0.016 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHH
Q 002477 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV 522 (917)
Q Consensus 443 ~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 522 (917)
...|+++++.+|.+ +..++......|++++|...|++++...| .+..+|..++
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------~~~~a~~~lg 65 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMAQP--------------------WSWRAHIALA 65 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------CcHHHHHHHH
Confidence 45688888887743 44567777888888888888888888755 4778888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHH
Q 002477 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY 591 (917)
Q Consensus 523 ~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~y 591 (917)
.++...|++++|...|++++.++|.++.+++++|..+...|++++|+..|++++.+ .|++...|...
T Consensus 66 ~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~ 132 (144)
T PRK15359 66 GTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIR 132 (144)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888886 78877766543
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.04 E-value=5.5e-08 Score=116.21 Aligned_cols=158 Identities=11% Similarity=0.017 Sum_probs=124.1
Q ss_pred ccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCH
Q 002477 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL 531 (917)
Q Consensus 452 ~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~ 531 (917)
.+|.+. ..|..++..+...+++++|..+.+.++..+| ++..+|+..+.++.+.+++
T Consensus 26 ~~p~n~----~a~~~Li~~~~~~~~~deai~i~~~~l~~~P--------------------~~i~~yy~~G~l~~q~~~~ 81 (906)
T PRK14720 26 YSLSKF----KELDDLIDAYKSENLTDEAKDICEEHLKEHK--------------------KSISALYISGILSLSRRPL 81 (906)
T ss_pred CCcchH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------cceehHHHHHHHHHhhcch
Confidence 456666 9999999999999999999999999998876 4667777777777777766
Q ss_pred HHHHHHHHHHHhccCCCH-------------------HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 532 ESTRAVYERILDLRIATP-------------------QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 532 ~~A~~~y~~al~~~p~~~-------------------~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
+.+.-+ ++++..+.+. .++..+|.+|.+.|..++|+.+|+++++. +|++..+.+.|+
T Consensus 82 ~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~A 157 (906)
T PRK14720 82 NDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLA 157 (906)
T ss_pred hhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHH
Confidence 666555 5555555544 78889999999999999999999999997 899999999887
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
..+..+ ++++|+.++.+|+... ...+.+..+..+.++.+..+|.+
T Consensus 158 Y~~ae~----dL~KA~~m~~KAV~~~----------------i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 158 TSYEEE----DKEKAITYLKKAIYRF----------------IKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHHh----hHHHHHHHHHHHHHHH----------------HhhhcchHHHHHHHHHHhcCccc
Confidence 655532 7999999999998762 22346666777777777777764
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=7.2e-07 Score=102.45 Aligned_cols=324 Identities=15% Similarity=0.157 Sum_probs=214.6
Q ss_pred cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHh--
Q 002477 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-- 473 (917)
Q Consensus 396 ~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~-- 473 (917)
.|++++|++.+++....|- ....+.-..|.++.+.|++++|..+|...++.+|.+. ..+..+.....-
T Consensus 17 ~g~~~~AL~~L~~~~~~I~------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQIL------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----DYYRGLEEALGLQL 86 (517)
T ss_pred CCCHHHHHHHHHhhhhhCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHhhhc
Confidence 4677888888877665542 3456667788888899999999999999999998887 666555555421
Q ss_pred ---cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcC-CHH-HHHHHHHHHHhccCCC
Q 002477 474 ---HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG-NLE-STRAVYERILDLRIAT 548 (917)
Q Consensus 474 ---~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g-~~~-~A~~~y~~al~~~p~~ 548 (917)
..+.+....+|+......| ++..+- ..-+....| .+. .+.......+.. .-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp--------------------~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~K--gv 142 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYP--------------------RSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRK--GV 142 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCc--------------------cccchh--HhhcccCCHHHHHHHHHHHHHHHHhc--CC
Confidence 2245666666766554433 232221 111111122 222 333444555543 46
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhcc-------------CCCChHHHHHHHH-HHHHHHhCCCChHHHHHHHHHH
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKIF-------------KYPHVKDIWVTYL-SKFVKRYGKTKLERARELFENA 614 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~f-------------~~P~~~~lw~~yl-~~~~~~~~~~~~e~Ar~lfe~a 614 (917)
|.++.++-.+|.......-...+++..+... ..|...-+|..|+ +.... ..|++++|....++|
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd--~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD--YLGDYEKALEYIDKA 220 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH--HhCCHHHHHHHHHHH
Confidence 7788888777765444444444444433221 1233456787664 33333 357899999999999
Q ss_pred HHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhC-CCC
Q 002477 615 VETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESG-LPD 693 (917)
Q Consensus 615 l~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~-~p~ 693 (917)
|+..|. .+++|+.-|+++...|++.+|...++.|...++.+. .+-...+....+.|.+++|..+...-...+ .|.
T Consensus 221 I~htPt--~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 221 IEHTPT--LVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HhcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 999999 899999999999999999999999999999988743 334445555568899999999998877652 232
Q ss_pred chHH---HHHH--HHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHhHhhh
Q 002477 694 KDVK---AMCL--KYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWN---RWHEFEVNHGNEDTFREMLRIKRSVSA 764 (917)
Q Consensus 694 ~~~~---~~~l--~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~---~~~~fe~~~G~~~~a~~~lr~~r~~~~ 764 (917)
.+.. -+|+ ..|..+.+.|++..|...|....+..+ ++.. -+..+..+-|+.....+|||..-.+-.
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~-----~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~ 370 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD-----DFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRS 370 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHhcccccHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 3222 2454 456778899999999999988876521 1111 155667888999999999975444443
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=7.3e-09 Score=116.62 Aligned_cols=222 Identities=15% Similarity=0.201 Sum_probs=179.5
Q ss_pred CCCCHHHHHHHHHH---Hc--CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 381 NPHNVEQWHRRVKI---FE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 381 nP~~~~~w~~~~~l---~~--~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
-|+-...|.....+ +. |....|+..|++ ...|...+.+|...|+...|..+..+-++ .|+
T Consensus 391 a~~lpp~Wq~q~~laell~slGitksAl~I~Er--------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~ 455 (777)
T KOG1128|consen 391 APHLPPIWQLQRLLAELLLSLGITKSALVIFER--------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDP 455 (777)
T ss_pred cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHh--------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCC
Confidence 45556666554433 32 455667777764 36799999999999999999999999998 555
Q ss_pred ChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHH
Q 002477 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (917)
Q Consensus 456 ~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~ 535 (917)
++ .+||.++++.....-+++|..+.... +.++-..++....+.+++.++.
T Consensus 456 d~----~lyc~LGDv~~d~s~yEkawElsn~~--------------------------sarA~r~~~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 456 DP----RLYCLLGDVLHDPSLYEKAWELSNYI--------------------------SARAQRSLALLILSNKDFSEAD 505 (777)
T ss_pred cc----hhHHHhhhhccChHHHHHHHHHhhhh--------------------------hHHHHHhhccccccchhHHHHH
Confidence 55 89999998877666666776666542 3333344455555678999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 002477 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (917)
Q Consensus 536 ~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al 615 (917)
+.+++.++++|-.+.+|+++|.+..+.+++..|.+.|.+++.+ .|++.+.|+++....+ ..++..+|+..+..|+
T Consensus 506 ~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi---~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 506 KHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYI---RLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHH---HHhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 9999999999765444 3356899999999999
Q ss_pred HhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002477 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654 (917)
Q Consensus 616 ~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~ 654 (917)
+-+-. +..+|.+|..+..+.|.++.|+..|.+.+...
T Consensus 581 Kcn~~--~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 581 KCNYQ--HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hcCCC--CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 98744 67899999999999999999999999998754
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=4.7e-08 Score=102.67 Aligned_cols=191 Identities=12% Similarity=0.040 Sum_probs=116.0
Q ss_pred hccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH--
Q 002477 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-- 586 (917)
Q Consensus 512 ~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~-- 586 (917)
+.....++..+..+...|+++.|...|++++...|.++ .+++.+|..+...|++++|+..|+++++. +|++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34566777777777888888888888888888887765 56788888888888888888888888886 555543
Q ss_pred -HHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 587 -IWVTYLSKFVKRY-----GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 587 -lw~~yl~~~~~~~-----~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
.|...+....... ..++++.|...|++++...|. +...+..+..+....+.. .. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~----~~-------------~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRL----AG-------------K 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHH----HH-------------H
Confidence 2332222111100 014566777777777777776 333332222211110000 00 0
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 661 GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 661 ~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~-~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
.. .....+...|++.+|...|+++++. .|+. .....+...+..+.++|++++|..+++.....
T Consensus 169 ~~--~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 EL--YVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HH--HHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 0111224567777788888888777 6653 23466777777788888888888877766554
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=3.1e-08 Score=117.67 Aligned_cols=140 Identities=14% Similarity=0.030 Sum_probs=118.5
Q ss_pred hccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHH
Q 002477 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY 591 (917)
Q Consensus 512 ~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~y 591 (917)
+........++.+..+.|.+++|..++++++++.|++..++++++..+.+.+.+++|...+++++.. .|++.......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3467888888999999999999999999999999999999999999999999999999999999986 88888777766
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 592 LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 592 l~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
...+. ..|.+++|..+|++++...|+ ...+++.+|..+...|+.++|...|+++++...+..
T Consensus 161 a~~l~---~~g~~~~A~~~y~~~~~~~p~--~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 161 AKSWD---EIGQSEQADACFERLSRQHPE--FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHH---HhcchHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 54444 457899999999999987777 688899999999999999999999999988876543
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=1.6e-06 Score=92.16 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=216.2
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhc
Q 002477 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (917)
Q Consensus 434 ~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (917)
...|++..|.....++-+..+... ..++.-++.--+.|+++.|-.++.++.+.++. .
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~----l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-------------------~ 151 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPV----LAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-------------------D 151 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchH----HHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-------------------c
Confidence 346899999999988776655444 66777788888899999999999999987541 1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--cCCCChH----HH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI--FKYPHVK----DI 587 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~--f~~P~~~----~l 587 (917)
........+.+....|++..|+.-..++++..|.+|.+..-..+.|...|.+.....+.....+. +.++... ..
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 34555667778888899999999999999999999999999999999999999999988887764 1222221 22
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHH
Q 002477 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665 (917)
Q Consensus 588 w~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~--~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~ 665 (917)
|...+.... ..+..+. +.+..+..|.+ .++.+-..|+.-+.++|+.+.|.++.+.+++..-+.. +. .
T Consensus 232 ~~glL~q~~---~~~~~~g----L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~ 300 (400)
T COG3071 232 WEGLLQQAR---DDNGSEG----LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-R 300 (400)
T ss_pred HHHHHHHHh---ccccchH----HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-H
Confidence 333222211 2122222 44455555543 3578999999999999999999999999999876533 22 2
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHH
Q 002477 666 YIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVN 745 (917)
Q Consensus 666 ~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~ 745 (917)
++.. ...++...-.+..++.++. .|++. .+++.+|.++.+.+.+.+|...|+.|++. .| +..-|........+
T Consensus 301 ~~~~-l~~~d~~~l~k~~e~~l~~-h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~--s~~~~~~la~~~~~ 373 (400)
T COG3071 301 LIPR-LRPGDPEPLIKAAEKWLKQ-HPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL-RP--SASDYAELADALDQ 373 (400)
T ss_pred HHhh-cCCCCchHHHHHHHHHHHh-CCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC--ChhhHHHHHHHHHH
Confidence 2222 4668888899999999998 88887 67999999999999999999999999988 55 45677888888889
Q ss_pred cCCHHHHHHHHH
Q 002477 746 HGNEDTFREMLR 757 (917)
Q Consensus 746 ~G~~~~a~~~lr 757 (917)
.|....+.++.+
T Consensus 374 ~g~~~~A~~~r~ 385 (400)
T COG3071 374 LGEPEEAEQVRR 385 (400)
T ss_pred cCChHHHHHHHH
Confidence 999999888874
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.8e-07 Score=93.18 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHh
Q 002477 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY---ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR 473 (917)
Q Consensus 397 ~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~---~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~ 473 (917)
.+++++++.+.+.+.. .+..+.| .+.|.-|=++. ...|..+-|...+.+.....|.+. .+-...|-++..
T Consensus 26 rnseevv~l~~~~~~~-~k~~~~g--~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~----RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNY-SKSGALG--DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK----RVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHH-hhhcccC--chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Confidence 3566777777766643 2222222 35565554443 457899999999999888788888 888888888888
Q ss_pred cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHH
Q 002477 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 474 ~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
.|++++|+++|++.+.-.|. +.-++..-+-+...+|..-.|++-...-++.+++++.+|.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt--------------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~ 158 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT--------------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH 158 (289)
T ss_pred hhchhhHHHHHHHHhccCcc--------------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999987662 3344444555667788888999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 554 ~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
.++.+|...|.|++|.=.||..+-+ .|.++-.+..|.....-.-+..+++-||..|+++++.+|.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999999999999999999986 8988887777776555443456788999999999999985
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=1.5e-08 Score=102.68 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccH
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (917)
.++.+++...++++++.+|.++ ..|..++.++...|+++.|+..|++++...| ++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--------------------~~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLRG--------------------ENA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCH
Confidence 4555667777777777777777 7777777777777777777777777776644 466
Q ss_pred HHHHHHHHHH-HHcCC--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 516 RLWTFYVDLE-ESLGN--LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 516 ~~w~~~~~l~-~~~g~--~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.+|..++.++ ...|+ .++|+.++++++..+|+++.++.++|..+.+.|++++|+..|++++++
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777753 55565 477777777777777777777777777777777777777777777776
No 112
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.91 E-value=3e-06 Score=90.06 Aligned_cols=290 Identities=15% Similarity=0.133 Sum_probs=143.0
Q ss_pred HHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHH
Q 002477 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (917)
Q Consensus 392 ~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e 471 (917)
..+++|++.+|.....++-.. . +.+.-.++.-|..--..|+.+.|-.++.++.+..++.. ..+.+..+++.
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~-~-----e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarll 163 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEH-G-----EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLL 163 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhc-C-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHH
Confidence 445566666666655554322 1 12333444445555566777777777777776633321 15566666677
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHH
Q 002477 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (917)
Q Consensus 472 ~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~ 551 (917)
+..+++..|+.-.+++....| ..+.+......++...|.+.....+..++-+...-+..-
T Consensus 164 l~~~d~~aA~~~v~~ll~~~p--------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTP--------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCc--------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 777777777777777766544 234444455555555555555555555555443322211
Q ss_pred HHH-----HHHHHHHccCHHHHHH---HHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc
Q 002477 552 IIN-----YALLLEEHKYFEDAFR---VYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV 623 (917)
Q Consensus 552 ~~~-----~a~~~~~~g~~e~A~~---~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~ 623 (917)
+.. +--++.+.++-+.+.. ..+..-.. --+++++-..|+..+. ..+..+.|..+.+++++..-+
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li---~l~~~~~A~~~i~~~Lk~~~D--- 295 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLI---RLGDHDEAQEIIEDALKRQWD--- 295 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHH---HcCChHHHHHHHHHHHHhccC---
Confidence 111 1111111222111111 11111110 0112233344444444 334555566666555554333
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHH
Q 002477 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKY 703 (917)
Q Consensus 624 ~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~ 703 (917)
..+...++.+ +-|+...-++..++.++.+|+++.+.+..+++. .+.+.+.+|...++.+++. -|.. ..|...
T Consensus 296 ~~L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~--~k~~~w~kA~~~leaAl~~-~~s~---~~~~~l 367 (400)
T COG3071 296 PRLCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA--LKNKLWGKASEALEAALKL-RPSA---SDYAEL 367 (400)
T ss_pred hhHHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH--HHhhHHHHHHHHHHHHHhc-CCCh---hhHHHH
Confidence 2232222222 245555555555666666665554444444444 3555556666666666655 3322 235666
Q ss_pred HHHHHHcCChhHHHHHHHHHHcc
Q 002477 704 AELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 704 a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
|..+.++|+..+|-.+++.++-.
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 66666666666666666666544
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=1.1e-07 Score=95.73 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=142.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
....+ ..++..+...|+-+.+..+..+++..+|.+. .+...++....+.|++..|...++++....|
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~----~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-------- 131 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR----ELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-------- 131 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH----HHHHHHHHHHHHhcchHHHHHHHHHHhccCC--------
Confidence 45677 8899999999999999999999988888887 7777799999999999999999999998855
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
++.++|+..+-.+.+.|+++.|+..|.+++++.|+.|.+..|++..+.-.|+++.|..++.++...
T Consensus 132 ------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-- 197 (257)
T COG5010 132 ------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-- 197 (257)
T ss_pred ------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 589999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 581 ~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
-+.+..+-... ..... ..+++..|+++-.+-+.
T Consensus 198 ~~ad~~v~~NL-Al~~~--~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 198 PAADSRVRQNL-ALVVG--LQGDFREAEDIAVQELL 230 (257)
T ss_pred CCCchHHHHHH-HHHHh--hcCChHHHHhhcccccc
Confidence 33344444433 22222 56889999998877543
No 114
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1e-07 Score=100.96 Aligned_cols=276 Identities=13% Similarity=0.107 Sum_probs=160.3
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCH
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~ 477 (917)
.+..++..|+.||.. .| .+...|..-|..+...|+++.|..-.+..++..+..+ ......+......+..
T Consensus 64 ~Y~nal~~yt~Ai~~-~p-----d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDM-CP-----DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----KGQLREGQCHLALSDL 133 (486)
T ss_pred hHHHHHHHHHHHHHh-Cc-----cchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----ccccchhhhhhhhHHH
Confidence 456788999999975 45 5678888888889999999999999989888887765 4444444444444444
Q ss_pred HHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002477 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (917)
Q Consensus 478 ~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~ 557 (917)
.+|...|+..- +....+.+...+...++..+-|...+.-..-+.++.-+|++++|...=-.++.+++.+..+..--+.
T Consensus 134 i~A~~~~~~~~--~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 134 IEAEEKLKSKQ--AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHhhhhh--hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 45544443110 0000000000000011111112223333444567777899999999999999999999998888888
Q ss_pred HHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH--HHHH-------HHhCCCChHHHHHHHHHHHHhCCcC--CcHHH
Q 002477 558 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL--SKFV-------KRYGKTKLERARELFENAVETAPAD--AVKPL 626 (917)
Q Consensus 558 ~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl--~~~~-------~~~~~~~~e~Ar~lfe~al~~~p~~--~~~~l 626 (917)
++.-+.+.+.|...|++++.+ +|...+.-..+. .++. .-+..|++..|-+.|..+|...|.+ ....+
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 888899999999999999997 777643322221 0000 0113445555555555555555553 12334
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh
Q 002477 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 627 ~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~ 689 (917)
|.+.+.+..+.|..++|+...+.++.++|.--.. +.........++.++.|.+.|++|++.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syika--ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKA--LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555555555441111 111111122334455555555555554
No 115
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.7e-07 Score=99.24 Aligned_cols=272 Identities=15% Similarity=0.101 Sum_probs=191.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhh
Q 002477 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (917)
Q Consensus 430 a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 509 (917)
+..+.+..++..|...|..|++..|.++ ..|..-+..++..++++.|..-.++.+.+.+. +. ..+.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a----~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~----~~------k~~~ 121 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNA----SYYSNRAATLMMLGRFEEALGDARQSVRLKDG----FS------KGQL 121 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccch----hhhchhHHHHHHHHhHhhcccchhhheecCCC----cc------cccc
Confidence 3345667789999999999999999987 89999999999999999999999888877551 11 0111
Q ss_pred hhhccHHHHHHHHH---HHHHcC-----CHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 510 KLHKSLRLWTFYVD---LEESLG-----NLESTRAVYERILDLRIATP---QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 510 ~~~~~~~~w~~~~~---l~~~~g-----~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
+. .+.....++ .++... ....+..-+++.+..+...| ..-+.-+.++.-.|+++.|.++--+.+++
T Consensus 122 r~---~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 122 RE---GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred ch---hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 11 111111111 111111 12233333444443332223 33445578888999999999999999997
Q ss_pred cCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc-H---------HHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 579 FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-K---------PLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 579 f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~-~---------~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
++.+.+... +.-...++ ..+.+.|..-|+++|...|++.. . ..|-.-|.-..+.|.+..|-+.|.
T Consensus 199 --d~~n~~al~--vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 199 --DATNAEALY--VRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred --ccchhHHHH--hccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 787765443 22222222 46799999999999999998522 2 244455556667999999999999
Q ss_pred HHHhhCCCCChH--HHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 649 QATKAVPNHEKL--GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 649 ~al~~~p~~~~~--~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
.||..+|++... .+|.........+|...+|..-++.++++ .| .....++.-|..+..+++++.|...|++|++.
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~--syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DS--SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999997543 34444444446789999999999999998 44 44467888899999999999999999999998
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.4e-05 Score=86.88 Aligned_cols=356 Identities=16% Similarity=0.152 Sum_probs=209.0
Q ss_pred HHhhCCCCHHHHHHHH-HHH-cCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 002477 377 LLRQNPHNVEQWHRRV-KIF-EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (917)
Q Consensus 377 ~L~~nP~~~~~w~~~~-~l~-~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~ 454 (917)
+|...|++.......+ .+. .+.+++|... |+. .+ +........+.-|-++.+.+..++|...++ .+ ++
T Consensus 38 il~~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk-~~--~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~--~~ 107 (652)
T KOG2376|consen 38 ILSIVPDDEDAIRCKVVALIQLDKYEDALKL----IKK-NG--ALLVINSFFFEKAYCEYRLNKLDEALKTLK-GL--DR 107 (652)
T ss_pred HHhcCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHh-cc--hhhhcchhhHHHHHHHHHcccHHHHHHHHh-cc--cc
Confidence 5667788887765543 332 2344444422 111 11 001112222455556678999999999998 33 33
Q ss_pred CChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCh--hHHHhhhhc---CCchh--hhh---hh-ccHHHHHHHHH
Q 002477 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV--EVRRRVAAD---GNEPV--QMK---LH-KSLRLWTFYVD 523 (917)
Q Consensus 455 ~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~--~~~~~~~~~---~~~~~--~~~---~~-~~~~~w~~~~~ 523 (917)
.++ .+..-.|.+..+.++|++|..+|+..+..... ...++.... ...++ ... ++ .+..+.+.-+-
T Consensus 108 ~~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac 183 (652)
T KOG2376|consen 108 LDD----KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTAC 183 (652)
T ss_pred cch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHH
Confidence 334 56677889999999999999999999865331 122222211 11111 111 22 25667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc--------CCC--H-----HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH--
Q 002477 524 LEESLGNLESTRAVYERILDLR--------IAT--P-----QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-- 586 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~--------p~~--~-----~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~-- 586 (917)
.+...|++..|++++++++.++ .+. + .+...++.++...|+.++|..+|...++. +|.+..
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~ 261 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSL 261 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHH
Confidence 8889999999999999995431 111 1 25677899999999999999999999986 332210
Q ss_pred --HHHHHHH-----------------------------HHHH-------------HhCCCChHHHHHHHHHHHHhCCcCC
Q 002477 587 --IWVTYLS-----------------------------KFVK-------------RYGKTKLERARELFENAVETAPADA 622 (917)
Q Consensus 587 --lw~~yl~-----------------------------~~~~-------------~~~~~~~e~Ar~lfe~al~~~p~~~ 622 (917)
+-|.... .+.. .+-.++.+.+|++..+.-...|...
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~ 341 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESL 341 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHH
Confidence 0111000 0000 0011222333332222211222211
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHH--------HHHHh-CCCC
Q 002477 623 VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYE--------QAIES-GLPD 693 (917)
Q Consensus 623 ~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye--------~al~~-~~p~ 693 (917)
.++.+.-+ ...+.....+|..++....+.+|.+.. .+....+......|++..|..++. ...+. ..|
T Consensus 342 -~~~ll~~~-t~~~~~~~~ka~e~L~~~~~~~p~~s~-~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P- 417 (652)
T KOG2376|consen 342 -FPILLQEA-TKVREKKHKKAIELLLQFADGHPEKSK-VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP- 417 (652)
T ss_pred -HHHHHHHH-HHHHHHHHhhhHHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh-
Confidence 11111111 112223678899999999999998633 233334444467899999999999 33333 122
Q ss_pred chHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 694 KDVKAMCLKYAELEKSLGEIDRARGIYVFASQF------ADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 694 ~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~------~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
.+.-....++.+.++.+-|.+++..|+.- +.+. ....|.....|+.++|+.+++...|+
T Consensus 418 ----~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~-l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 418 ----GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA-LLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred ----hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH-HHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 22333344566777777777777777654 1221 34778889999999999999998884
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=6.1e-08 Score=115.24 Aligned_cols=148 Identities=13% Similarity=0.047 Sum_probs=133.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
..+.....+|....+.|.+++|...+++++...|.+. ..+..++....+.+.+++|+..+++++...|
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~----~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------- 151 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS----EAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------- 151 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------
Confidence 4578889999999999999999999999999999998 9999999999999999999999999998865
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
.+....+.++.++...|.+++|..+|++++..+|+++.+++++|..+...|+.++|...|+++++.+
T Consensus 152 ------------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~- 218 (694)
T PRK15179 152 ------------SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI- 218 (694)
T ss_pred ------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-
Confidence 5889999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCChHHHHHHHHHH
Q 002477 581 YPHVKDIWVTYLSK 594 (917)
Q Consensus 581 ~P~~~~lw~~yl~~ 594 (917)
.|.. .-++.|+..
T Consensus 219 ~~~~-~~~~~~~~~ 231 (694)
T PRK15179 219 GDGA-RKLTRRLVD 231 (694)
T ss_pred Ccch-HHHHHHHHH
Confidence 4544 344555543
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=5.3e-08 Score=109.87 Aligned_cols=214 Identities=20% Similarity=0.240 Sum_probs=159.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCch
Q 002477 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (917)
Q Consensus 427 ~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 506 (917)
..+|..+.+.|-..+|..+|++. .+|...+.++...|+..+|..+..+-+..+|
T Consensus 402 ~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-------------- 455 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-------------- 455 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC--------------
Confidence 56777888888888888888875 7788888888888888888888888777554
Q ss_pred hhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI-ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 507 ~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p-~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
.+.+|..++|+.... .+|+++.++.- .+..+...+|....++++|+++.+.+++.+++ +|-..
T Consensus 456 -------d~~lyc~LGDv~~d~-------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~ 519 (777)
T KOG1128|consen 456 -------DPRLYCLLGDVLHDP-------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--NPLQL 519 (777)
T ss_pred -------cchhHHHhhhhccCh-------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--Cccch
Confidence 566776666654433 45555555422 12345556666666778888888888888887 78888
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHH
Q 002477 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI 665 (917)
Q Consensus 586 ~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~ 665 (917)
..|..++.... ..++.+.|...|..|+...|+ ....|.+++..+.+.|...+|...+.+|++-+-.+ -.+|..
T Consensus 520 ~~wf~~G~~AL---qlek~q~av~aF~rcvtL~Pd--~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~iWEN 592 (777)
T KOG1128|consen 520 GTWFGLGCAAL---QLEKEQAAVKAFHRCVTLEPD--NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQIWEN 592 (777)
T ss_pred hHHHhccHHHH---HHhhhHHHHHHHHHHhhcCCC--chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--Ceeeec
Confidence 88887765544 345688888888888888888 67888888888888888888888888888877443 345666
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHh
Q 002477 666 YIARAAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 666 ~i~~~~~~~~~~~ar~~ye~al~~ 689 (917)
|...+.+.|.++.|...|.+.+..
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHh
Confidence 666667888888888888888775
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=6.1e-08 Score=92.08 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=105.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 002477 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (917)
Q Consensus 536 ~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al 615 (917)
..|++++...|.++.+.+.+|..+...|++++|...|++++.. +|.+..+|...+..+. ..+++++|...|++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQ---MLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999996 7888888877654443 3467999999999999
Q ss_pred HhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHH
Q 002477 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYE 664 (917)
Q Consensus 616 ~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~ 664 (917)
...|. +..+++.+|.++...|++++|+..|+++++..|++..+..+.
T Consensus 79 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 79 ALDPD--DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred hcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 99998 788999999999999999999999999999999876654433
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.84 E-value=6e-08 Score=92.17 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=87.1
Q ss_pred HHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHH
Q 002477 445 IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL 524 (917)
Q Consensus 445 i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l 524 (917)
.|++++..+|.+. .....++..+...|++++|...+++++...| .+..+|..++.+
T Consensus 5 ~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------~~~~~~~~la~~ 60 (135)
T TIGR02552 5 TLKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------YNSRYWLGLAAC 60 (135)
T ss_pred hHHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------CcHHHHHHHHHH
Confidence 5677777777766 6666777777777777777777777776544 366777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHH
Q 002477 525 EESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587 (917)
Q Consensus 525 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~l 587 (917)
+...|+++.|..+|++++...|.++..+..+|.++...|+++.|...|++++.+ +|.....
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 777777788888888877777777888888888888888888888888888876 5665443
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.3e-06 Score=87.30 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=138.1
Q ss_pred HHHHHHHHHHH---HHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHH
Q 002477 515 LRLWTFYVDLE---ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY 591 (917)
Q Consensus 515 ~~~w~~~~~l~---~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~y 591 (917)
...|..|-.+. ...|+.+-|..++.+.-+..|.++.+-...|.+++..|.+++|.++|++.+. .+|.+..+...-
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRK 126 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRK 126 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHH
Confidence 46777766543 4568999999999999999999999999999999999999999999999999 489998777765
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 002477 592 LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA 671 (917)
Q Consensus 592 l~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~ 671 (917)
+..+- .+|+.-.|......-++..|. +.++|..++.++...|++++|.-.|+..+-..|.++.. +..+.....
T Consensus 127 lAilk---a~GK~l~aIk~ln~YL~~F~~--D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~--f~rlae~~Y 199 (289)
T KOG3060|consen 127 LAILK---AQGKNLEAIKELNEYLDKFMN--DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY--FQRLAEVLY 199 (289)
T ss_pred HHHHH---HcCCcHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHH
Confidence 54332 456677999999999999999 79999999999999999999999999999999986643 233333222
Q ss_pred HhcC---cchHHHHHHHHHHhCCCCc
Q 002477 672 EIFG---VPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 672 ~~~~---~~~ar~~ye~al~~~~p~~ 694 (917)
-+|+ +.-+|..|+++++. .|.+
T Consensus 200 t~gg~eN~~~arkyy~~alkl-~~~~ 224 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKL-NPKN 224 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-ChHh
Confidence 3333 55689999999988 7744
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.80 E-value=3.5e-06 Score=96.88 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 002477 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELE 707 (917)
Q Consensus 628 ~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le 707 (917)
+.+|+.+...|++++|+.+.++||...|....+.+..+-|. ...|++.+|-...+.|.+. .+.+- -+-...+...
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil--Kh~G~~~~Aa~~~~~Ar~L-D~~DR--yiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL--KHAGDLKEAAEAMDEAREL-DLADR--YINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhC-ChhhH--HHHHHHHHHH
Confidence 44477777778888888888888887777666666665555 3667777788877777776 33222 2334455566
Q ss_pred HHcCChhHHHHHHHHHHcc
Q 002477 708 KSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 708 ~~~g~~~~Ar~i~~~a~~~ 726 (917)
.+.|+++.|..+...-...
T Consensus 273 LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHCCCHHHHHHHHHhhcCC
Confidence 6777888877777766554
No 123
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.80 E-value=6.6e-09 Score=105.40 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=110.3
Q ss_pred chHHHHHHhhCCCChHHHHHHHHHHHhC-----------------------ChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 002477 13 DLLYEEELLRNPFSLKLWWRYLVAKREA-----------------------PFKKRFVIYERALKALPGSYKLWHAYLIE 69 (917)
Q Consensus 13 ~~~~E~~l~~~P~~~~~W~~yi~~~~~~-----------------------~~~~~~~~yeral~~~P~s~~lW~~yl~~ 69 (917)
--.||..|++--.+...+++||+++..- ..++..++|.|+...+|++.++|..|+.+
T Consensus 37 Rr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y 116 (435)
T COG5191 37 RRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAY 116 (435)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHHHHHH
Confidence 3469999999999999999999865210 11244567899999999999999999999
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHh-hcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 002477 70 RLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLT-SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFV 148 (917)
Q Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~-~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~ 148 (917)
.. ..+.|..+-++|..||+.+|.+.++|+--|.+.+ ..+++..+|.+|.++|+.+| .+++||..|.+++
T Consensus 117 ~~--------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~--~~p~iw~eyfr~E 186 (435)
T COG5191 117 VI--------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS--RSPRIWIEYFRME 186 (435)
T ss_pred HH--------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC--CCchHHHHHHHHH
Confidence 85 5568999999999999999999999999999876 46799999999999999999 6899999999997
Q ss_pred HH
Q 002477 149 EQ 150 (917)
Q Consensus 149 ~~ 150 (917)
..
T Consensus 187 l~ 188 (435)
T COG5191 187 LM 188 (435)
T ss_pred HH
Confidence 53
No 124
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.7e-05 Score=82.41 Aligned_cols=325 Identities=14% Similarity=0.137 Sum_probs=192.3
Q ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHH
Q 002477 384 NVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (917)
Q Consensus 384 ~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~ 463 (917)
++..|+....+..+++++|.++|+-+...-+| +..+|..+|.++.-.|.+.+|..+-+++-+. |-.. .+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~------~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~----RL 126 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA------PAELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCI----RL 126 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCC------CcccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHH----HH
Confidence 35567777777777777888887776654333 5677777777777777788887777776432 1111 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002477 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (917)
Q Consensus 464 w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~ 543 (917)
.+.++ .+.++-++-.. |...+. .+..--..++.+....-.+++|+.+|.+++.
T Consensus 127 lfhla---hklndEk~~~~-fh~~Lq-----------------------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 127 LFHLA---HKLNDEKRILT-FHSSLQ-----------------------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHH---HHhCcHHHHHH-HHHHHh-----------------------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 23333322222 222211 1112222344444444568899999999998
Q ss_pred ccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH---------------hCCCChHHHH
Q 002477 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR---------------YGKTKLERAR 608 (917)
Q Consensus 544 ~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~---------------~~~~~~e~Ar 608 (917)
-+|....+-..+|.++.+..+++-+..++.--+.. .|++.-.-+..+.....- .+...++.+.
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 77766667778899999999999999998888885 566654444322221111 1122344444
Q ss_pred HHHHH----------HHHhCCcC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh-cC
Q 002477 609 ELFEN----------AVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI-FG 675 (917)
Q Consensus 609 ~lfe~----------al~~~p~~--~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~-~~ 675 (917)
.+... |++..|+- .-++..++++-++.++|+..+|..+.+ ...|..|.-.+..+.+..+..+ -+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcC
Confidence 44432 34444541 235678888889999999999988876 4577766655555554422111 01
Q ss_pred cch----HHHHH-----------------------------------HHHHHhCCCCchHHHHHHHHHHHHHHcCChhHH
Q 002477 676 VPK----TREIY-----------------------------------EQAIESGLPDKDVKAMCLKYAELEKSLGEIDRA 716 (917)
Q Consensus 676 ~~~----ar~~y-----------------------------------e~al~~~~p~~~~~~~~l~~a~le~~~g~~~~A 716 (917)
..+ |.+.| -..|+....+++ ..-+.||......|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD--~Fn~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD--DFNLNLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhhHHHHHHHHhcChHHH
Confidence 111 11111 112222112222 3456788888899999999
Q ss_pred HHHHHHHHccCCCC-CCHHHHHH-HHHHHHHcCCHHHHHHHH
Q 002477 717 RGIYVFASQFADPR-SDTEFWNR-WHEFEVNHGNEDTFREML 756 (917)
Q Consensus 717 r~i~~~a~~~~~P~-~~~~~w~~-~~~fe~~~G~~~~a~~~l 756 (917)
.++|-+.+ +|. .+.-++.. +..-+++.|...-|-+|+
T Consensus 413 Eelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 413 EELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99998875 454 34444444 456678888888888887
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=0.00018 Score=91.36 Aligned_cols=321 Identities=13% Similarity=0.058 Sum_probs=204.4
Q ss_pred HHHcCCchHHHHHHHHHHhccCCCccC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh-hhhHHHHHHHH
Q 002477 393 KIFEGNPTKQILTYTEAVRTVDPMKAV---GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV-DHLASIWCEWA 468 (917)
Q Consensus 393 ~l~~~~~~~a~~~y~~Ai~~i~p~~~~---~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~-~~l~~~w~~~a 468 (917)
....+++.++...+.++.......... .....+-...+..+...|+++.|...+++++...+... ......+..++
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 345678888888888776543221000 00123334456677789999999999999998544322 11224456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--
Q 002477 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI-- 546 (917)
Q Consensus 469 ~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p-- 546 (917)
......|+++.|+..+++++..... .+. .+.....+..++.++...|+++.|...+++++....
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~--------~g~------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQ--------HDV------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhh--------hcc------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999854220 000 001123445567788889999999999999998622
Q ss_pred ---CC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCC--CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 002477 547 ---AT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKY--PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (917)
Q Consensus 547 ---~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~--P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~ 618 (917)
.. ..++..+|.++...|++++|...+++++.+... |.....+...+..+. ...|+++.|...+++++...
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~--~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS--LARGDLDNARRYLNRLENLL 642 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHH
Confidence 11 224556788888999999999999999886321 221111111122222 25678999999999998753
Q ss_pred CcCCcHHHH---HH--HHHHHHHhCCHHHHHHHHHHHHhhCCCCChH--HHHHHHHHHHHHhcCcchHHHHHHHHHHhCC
Q 002477 619 PADAVKPLY---LQ--YAKLEEDYGLAKRAMKVYDQATKAVPNHEKL--GMYEIYIARAAEIFGVPKTREIYEQAIESGL 691 (917)
Q Consensus 619 p~~~~~~l~---~~--~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~--~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~ 691 (917)
+.......+ .. ........|..+.|...+.+.....+..... ..+..........|+.++|...+++++.. .
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~-~ 721 (903)
T PRK04841 643 GNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN-A 721 (903)
T ss_pred hcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H
Confidence 321111111 11 1233344789999999987766533222211 01122222235678899999999999875 2
Q ss_pred CC----chHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 692 PD----KDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 692 p~----~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
.. .......+.+|..+...|+.++|+..+.+|++...+.
T Consensus 722 ~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 722 RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 11 1223467778899999999999999999999986554
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1.1e-06 Score=95.66 Aligned_cols=134 Identities=13% Similarity=-0.034 Sum_probs=120.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
.....|+..|..+...|+++.|+..+...++..|+|+ -+|...+++++..|+.++|.+.+++++...|
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P-------- 371 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEANKAKEAIERLKKALALDP-------- 371 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------
Confidence 4568899999999999999999999999999999998 8999999999999999999999999998855
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.+.-+|..|++.+.+.|++.+|+..+.+.+..+|.+|..|..+|+.|...|+..++...+-.+..+
T Consensus 372 ------------~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 372 ------------NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred ------------CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999988888776666553
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=1.7e-06 Score=87.27 Aligned_cols=175 Identities=17% Similarity=0.120 Sum_probs=113.2
Q ss_pred HHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHH
Q 002477 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (917)
Q Consensus 442 A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 521 (917)
+...+-+....+|.+. .+ ..++.-+...|.-+.+..++.++...++ ++..+...+
T Consensus 52 a~~al~~~~~~~p~d~----~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--------------------~d~~ll~~~ 106 (257)
T COG5010 52 AAAALGAAVLRNPEDL----SI-AKLATALYLRGDADSSLAVLQKSAIAYP--------------------KDRELLAAQ 106 (257)
T ss_pred HHHHHHHHHhcCcchH----HH-HHHHHHHHhcccccchHHHHhhhhccCc--------------------ccHHHHHHH
Confidence 4444445555566655 66 6666666666666666666666554433 244555557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCC
Q 002477 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (917)
Q Consensus 522 ~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~ 601 (917)
+......|++..|...+.++..+.|.++.+|..+|-.|.+.|+++.|...|.+++++ .|+...+.++.+-.++ -.
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~---L~ 181 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLL---LR 181 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHH---Hc
Confidence 777777777777777777777777777777777777777777777777777777776 4555555555432222 34
Q ss_pred CChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 602 ~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
|+++.|+.++..+...-+. +..+--+++.+...+|+++.|..+-.
T Consensus 182 gd~~~A~~lll~a~l~~~a--d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA--DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC--chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5677777777777666554 45666677777777777777766654
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.9e-05 Score=87.49 Aligned_cols=180 Identities=13% Similarity=0.138 Sum_probs=110.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhh
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~ 501 (917)
...+|.-+|.+.++.|+++.|..+|..| .=|+....+.+-+|+.++|-++-+..-
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A------------~D~fs~VrI~C~qGk~~kAa~iA~esg------------- 965 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSA------------KDYFSMVRIKCIQGKTDKAARIAEESG------------- 965 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHh------------hhhhhheeeEeeccCchHHHHHHHhcc-------------
Confidence 3488999999999999999999999877 335556666677888888877665531
Q ss_pred cCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--------------------CHHHHHHHHHHHHH
Q 002477 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--------------------TPQIIINYALLLEE 561 (917)
Q Consensus 502 ~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~--------------------~~~~~~~~a~~~~~ 561 (917)
+....+.++..|+..|++.+|...|.|+-.+... .+.-...-|..|++
T Consensus 966 ------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 966 ------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred ------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 3456667788888888888888888776543110 01112233444444
Q ss_pred cc-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH
Q 002477 562 HK-YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (917)
Q Consensus 562 ~g-~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~ 640 (917)
.| ++..|..+|-+|=-+ .. -+.... ... --.|.++.-+= +.|.. ++.+....+.|.+...++
T Consensus 1034 ~g~~~~~AVmLYHkAGm~------~k----ALelAF---~tq-Qf~aL~lIa~D--Ld~~s-Dp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMI------GK----ALELAF---RTQ-QFSALDLIAKD--LDAGS-DPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred cchhhhHHHHHHHhhcch------HH----HHHHHH---hhc-ccHHHHHHHHh--cCCCC-CHHHHHHHHHHHHhHHHH
Confidence 44 556666555554321 00 011111 111 12233333322 23443 688889999999988889
Q ss_pred HHHHHH------HHHHHhhCC
Q 002477 641 KRAMKV------YDQATKAVP 655 (917)
Q Consensus 641 ~~A~~~------y~~al~~~p 655 (917)
++|..+ |++|++++.
T Consensus 1097 ekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1097 EKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 988776 566666553
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.9e-05 Score=88.53 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=188.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchh
Q 002477 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (917)
Q Consensus 428 ~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 507 (917)
..|-+....|-+++|..+|.++-.. + .+-.++...|.+++|.++-+.--.+-
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~---------D---LlNKlyQs~g~w~eA~eiAE~~DRiH---------------- 856 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY---------D---LLNKLYQSQGMWSEAFEIAETKDRIH---------------- 856 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH---------H---HHHHHHHhcccHHHHHHHHhhcccee----------------
Confidence 3344445556666666666665332 1 12334455566666655543311110
Q ss_pred hhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------hccC----------CCHHHHHHHHHHHHHccCHHH
Q 002477 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL----------DLRI----------ATPQIIINYALLLEEHKYFED 567 (917)
Q Consensus 508 ~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al----------~~~p----------~~~~~~~~~a~~~~~~g~~e~ 567 (917)
--..++.|+..++..++++.|.+.|+++- .-+| .++..|.=||+.++..|..+.
T Consensus 857 ------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 857 ------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 12345556666666666666666666531 1111 245566777888888888888
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 002477 568 AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVY 647 (917)
Q Consensus 568 A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y 647 (917)
|+.+|+.|-.-| ....... -+|+.++|-.+-++. . +....+.+|+.|+..|+..+|+..|
T Consensus 931 Al~~Y~~A~D~f----------s~VrI~C---~qGk~~kAa~iA~es-----g--d~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 931 ALSFYSSAKDYF----------SMVRIKC---IQGKTDKAARIAEES-----G--DKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHHHHhhhhh----------hheeeEe---eccCchHHHHHHHhc-----c--cHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888876632 1110011 246777777766654 3 5667889999999999999999988
Q ss_pred HHHHh------hCCCCC-hHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHH
Q 002477 648 DQATK------AVPNHE-KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720 (917)
Q Consensus 648 ~~al~------~~p~~~-~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~ 720 (917)
.||-. ++..++ +-.+|+..+. ....+...|-..|++ +|.+. -+-..++.+.|.+-+|.++-
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~--s~~~d~v~aArYyEe-----~g~~~-----~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALM--SGGSDLVSAARYYEE-----LGGYA-----HKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhh--cCchhHHHHHHHHHH-----cchhh-----hHHHHHHHhhcchHHHHHHH
Confidence 77643 333332 1234443332 233344455666665 33221 11223556777777777643
Q ss_pred H---------HHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcc----c-c--hhh-------------
Q 002477 721 V---------FASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY----S-Q--THF------------- 771 (917)
Q Consensus 721 ~---------~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~----~-~--~~~------------- 771 (917)
- -..+..||.+++.+...-.+|-..+.++++|.++|-..|..+..- + . |.-
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCC
Confidence 2 222224888899999999999999999999999997666644321 0 0 111
Q ss_pred -----------hhhHHHHhhhhhhchhHhhhHhhhcCCcccHHHHHHHhhcccccCCCCCCCCCcccceecCC
Q 002477 772 -----------ILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQLAPAANNGNAKDSSRKVGFVSAGV 833 (917)
Q Consensus 772 -----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (917)
-.+.++. ++|++-.|.+.+.|||..-.+|..|=. .+ +..+|.|.++.+
T Consensus 1139 ~~e~~R~~vLeqvae~c~---qQG~Yh~AtKKfTQAGdKl~AMraLLK---SG--------dt~KI~FFAn~s 1197 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCL---QQGAYHAATKKFTQAGDKLSAMRALLK---SG--------DTQKIRFFANTS 1197 (1416)
T ss_pred ccHHHHHHHHHHHHHHHH---hccchHHHHHHHhhhhhHHHHHHHHHh---cC--------CcceEEEEeecc
Confidence 1122222 237777777888888766666666532 11 124577776654
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1e-06 Score=91.24 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHH
Q 002477 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609 (917)
Q Consensus 530 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~ 609 (917)
+.+....-.+.-+..+|+++..|..+|..|..+|++..|...|.+++++ .|++.++|..|...++..-++....+++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4677778888899999999999999999999999999999999999998 89999999999988877667778899999
Q ss_pred HHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
+|.+++..+|. +......+|.-+.+.|++.+|...++..++..|.+.
T Consensus 215 ll~~al~~D~~--~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALALDPA--NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999 788888888888999999999999999999988764
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00044 Score=72.26 Aligned_cols=308 Identities=12% Similarity=0.084 Sum_probs=173.5
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHH-HHH-HhcC
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWA-EME-LRHK 475 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a-~~e-~~~~ 475 (917)
.+.+|+.+|++.+.. +| ....+-..+|.+|.+..-++-+.+++.--|...|+++ -.-...+ ..+ +-+|
T Consensus 166 HYQeAIdvYkrvL~d-n~-----ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt----iA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQD-NP-----EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST----IAKNLKACNLFRLING 235 (557)
T ss_pred HHHHHHHHHHHHHhc-Ch-----hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH----HHHHHHHHHHhhhhcc
Confidence 457899999999865 44 4556667778889999999999999999898888876 2222111 111 1122
Q ss_pred C--HHHHHHHHHHHHcCCChhHHHhh--------hhcCCchhhh-hhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002477 476 N--FKGALELMRRATAEPSVEVRRRV--------AADGNEPVQM-KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (917)
Q Consensus 476 ~--~~~A~~~l~~al~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~ 544 (917)
. -++-.++.+.+.+.-|. +.... ..+|...+-. .+..-+..-..++-.+..++++.+|..+.+ ++
T Consensus 236 r~ae~E~k~ladN~~~~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl 311 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEYPF-IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DL 311 (557)
T ss_pred chhHHHHHHHHhcccccchh-HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hc
Confidence 2 22223333333322220 00000 0112111110 112234555566666788899888877654 67
Q ss_pred cCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc-----------CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 002477 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF-----------KYPHVKDIWVTYLSKFVKRYGKTKLERARELFEN 613 (917)
Q Consensus 545 ~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f-----------~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~ 613 (917)
+|.+|.-++--|......|+--.+.....-|-..| .-|..-. ...|+ |.. .+++.....+..
T Consensus 312 ~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs-mAs~f--FL~----~qFddVl~YlnS 384 (557)
T KOG3785|consen 312 DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS-MASYF--FLS----FQFDDVLTYLNS 384 (557)
T ss_pred CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH-HHHHH--HHH----HHHHHHHHHHHH
Confidence 89999988887877777775443333332222211 1132211 11121 111 136677666665
Q ss_pred HHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH-HHhcCcchHHHHHHHHHHhCCC
Q 002477 614 AVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARA-AEIFGVPKTREIYEQAIESGLP 692 (917)
Q Consensus 614 al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~-~~~~~~~~ar~~ye~al~~~~p 692 (917)
.-...-+ +-.+-+++|+.....|++.+|.+.|-+.-. |+-..-.+|..++.+. ...+...- .|+-.|+. ..
T Consensus 385 i~sYF~N--dD~Fn~N~AQAk~atgny~eaEelf~~is~--~~ikn~~~Y~s~LArCyi~nkkP~l---AW~~~lk~-~t 456 (557)
T KOG3785|consen 385 IESYFTN--DDDFNLNLAQAKLATGNYVEAEELFIRISG--PEIKNKILYKSMLARCYIRNKKPQL---AWDMMLKT-NT 456 (557)
T ss_pred HHHHhcC--cchhhhHHHHHHHHhcChHHHHHHHhhhcC--hhhhhhHHHHHHHHHHHHhcCCchH---HHHHHHhc-CC
Confidence 5555555 456889999999999999999999986632 3212234444444432 23344444 45566666 33
Q ss_pred CchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHH
Q 002477 693 DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWN 737 (917)
Q Consensus 693 ~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~ 737 (917)
+.....+.-..|+-..+.|++=-|-+.|...-. .||. ++.|.
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~--pEnWe 498 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPT--PENWE 498 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCC--ccccC
Confidence 333334445566677777877666666655433 3884 56664
No 132
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=7.7e-07 Score=91.42 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=91.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCC
Q 002477 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (917)
Q Consensus 522 ~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~ 601 (917)
++=+.+.++|.+|+..|.++|++.|.++..|.+.|..|.+.|.++.|++-++.+|.+ +|+....|...+..+ +.+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~---~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAY---LAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHH---Hcc
Confidence 334456789999999999999999999999999999999999999999999999998 999877777654333 378
Q ss_pred CChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhC
Q 002477 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (917)
Q Consensus 602 ~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g 638 (917)
|++++|.+.|.++|+..|. +...+..+...+.+.+
T Consensus 163 gk~~~A~~aykKaLeldP~--Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPD--NESYKSNLKIAEQKLN 197 (304)
T ss_pred CcHHHHHHHHHhhhccCCC--cHHHHHHHHHHHHHhc
Confidence 9999999999999999999 5555555554444433
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=3.5e-05 Score=84.27 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=126.4
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHH
Q 002477 454 YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (917)
Q Consensus 454 ~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~ 533 (917)
|... ..|+.+|.-..+.|+++.|+..++..+..-| +++-+|...++++...++..+
T Consensus 303 ~~~~----aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--------------------~N~~~~~~~~~i~~~~nk~~~ 358 (484)
T COG4783 303 RGGL----AAQYGRALQTYLAGQYDEALKLLQPLIAAQP--------------------DNPYYLELAGDILLEANKAKE 358 (484)
T ss_pred ccch----HHHHHHHHHHHHhcccchHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCChHH
Confidence 4555 8888888888899999999999999886533 588889999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 002477 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEN 613 (917)
Q Consensus 534 A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~ 613 (917)
|.+.+++++.++|..+-++++||..+...|++.+|+.++.+.+.. +|++...|.. +...+.. .|+
T Consensus 359 A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~-LAqay~~--~g~---------- 423 (484)
T COG4783 359 AIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--DPEDPNGWDL-LAQAYAE--LGN---------- 423 (484)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchHHHH-HHHHHHH--hCc----------
Confidence 999999999999999999999999999999999999999999884 8988888884 4444432 222
Q ss_pred HHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 614 AVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 614 al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
.......++..+...|.++.|+..+.++-+....
T Consensus 424 ---------~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 424 ---------RAEALLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred ---------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 3445566777777788899999999988887743
No 134
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=6.8e-06 Score=88.22 Aligned_cols=260 Identities=13% Similarity=0.057 Sum_probs=164.1
Q ss_pred HHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHH
Q 002477 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (917)
Q Consensus 390 ~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~ 469 (917)
-+-.+|.|++..+++-+. +...+| ........-.++.|...|+++.+..-.. ...+... .....++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~--~~~~~~----~~~~e~~~~~~Rs~iAlg~~~~vl~ei~---~~~~~~l----~av~~la~ 74 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS--LKSFSP----ENKLERDFYQYRSYIALGQYDSVLSEIK---KSSSPEL----QAVRLLAE 74 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH--CHTSTC----HHHHHHHHHHHHHHHHTT-HHHHHHHS----TTSSCCC----HHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh--ccCCCc----hhHHHHHHHHHHHHHHcCChhHHHHHhc---cCCChhH----HHHHHHHH
Confidence 344566788777766555 223233 1234556677788888898765443332 2222222 45566777
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCH
Q 002477 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (917)
Q Consensus 470 ~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~ 549 (917)
+....++.+.++.-++..+..+. ...++-+-..-+.++...|+++.|..++.+. .+.
T Consensus 75 y~~~~~~~e~~l~~l~~~~~~~~------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l 131 (290)
T PF04733_consen 75 YLSSPSDKESALEELKELLADQA------------------GESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSL 131 (290)
T ss_dssp HHCTSTTHHCHHHHHHHCCCTS---------------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH
T ss_pred HHhCccchHHHHHHHHHHHHhcc------------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc
Confidence 66554556666666655543321 0012223333344556678888888877664 467
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh--HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHH
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV--KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~--~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~ 627 (917)
....-...++...++++.|.+.++.+.+. +.+. ..+...|+.... |+.++..|.-+|+...+.+|. ++.+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~---g~e~~~~A~y~f~El~~~~~~--t~~~l 204 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLAT---GGEKYQDAFYIFEELSDKFGS--TPKLL 204 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHH---TTTCCCHHHHHHHHHHCCS----SHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhccCC--CHHHH
Confidence 77777888999999999999999998875 4443 233333333222 667899999999998877777 68888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCc-chHHHHHHHHHHhCCCCch
Q 002477 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV-PKTREIYEQAIESGLPDKD 695 (917)
Q Consensus 628 ~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~-~~ar~~ye~al~~~~p~~~ 695 (917)
...+.+....|++++|..+++.++..+|.++....-.+.+. ...|+. +.+.+...+.... .|++.
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~--~~~gk~~~~~~~~l~qL~~~-~p~h~ 270 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS--LHLGKPTEAAERYLSQLKQS-NPNHP 270 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH--HHTT-TCHHHHHHHHHCHHH-TTTSH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH--HHhCCChhHHHHHHHHHHHh-CCCCh
Confidence 88999999999999999999999999998766544333332 455665 5677777777777 78765
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=1.6e-06 Score=89.12 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=94.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhh
Q 002477 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMK 510 (917)
Q Consensus 431 ~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~ 510 (917)
.=..+.++|.+|...|.+|++++|.++ ..||..|..+.+.|.++.|++-.+.|+.+.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------------------ 146 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSIDP------------------ 146 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------------------
Confidence 344567889999999999999999998 8999999999999999999999999998876
Q ss_pred hhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHH
Q 002477 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE 566 (917)
Q Consensus 511 ~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e 566 (917)
...+.|..++..+..+|++++|...|+++|+++|.++..+.++.......+...
T Consensus 147 --~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 147 --HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 467888888888889999999999999999999999888877776666555444
No 136
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.47 E-value=3.8e-06 Score=91.97 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCC----CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHH
Q 002477 44 KRFVIYERALKALPGSYKLWHAYLIERLSIVKNLP----ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFIT 119 (917)
Q Consensus 44 ~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~----~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~ 119 (917)
+...-|++.++.+|++.++|..|+.+..+...... ....-.+.-..+|++||..+|.++++|+.|+....+.-..+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 34556899999999999999999999765443211 12233567789999999999999999999999998888888
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcC--CChHhHHHHHHHHHccCCC-------------C-HHHHH------
Q 002477 120 KARRTFDRALCALPVTQHDRIWEIYLRFVEQEG--IPIETSLRVYRRYLKYDPS-------------H-IEDFI------ 177 (917)
Q Consensus 120 ~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~--~~~~~a~~~~~r~l~~~P~-------------~-~~~~i------ 177 (917)
...+-++++|..+| .+..+|..|+.|..... ...+..+.+|.+.|..-.. . ...++
T Consensus 83 ~l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~ 160 (321)
T PF08424_consen 83 KLAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRL 160 (321)
T ss_pred HHHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999999999 68999999999987632 1236788888888754321 1 11111
Q ss_pred -HHHHhcccHHHHHHHHHHHhcC
Q 002477 178 -EFLVKSKLWQEAAERLASVLND 199 (917)
Q Consensus 178 -~~l~~~~~~~~A~~~l~~~l~~ 199 (917)
.++...|..+.|..+++.+++-
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHH
Confidence 3667899999999998888853
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.45 E-value=0.0054 Score=69.66 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHcC-CHHHHHHHH
Q 002477 698 AMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR-----WHEFEVNHG-NEDTFREML 756 (917)
Q Consensus 698 ~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~-----~~~fe~~~G-~~~~a~~~l 756 (917)
++.++++.++...|.++.|..-|-.|+++ +.- + -.|.. +..--++.| ..+.|.+|+
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaikl-nty-n-itwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKL-NTY-N-ITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhc-ccc-c-chhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 56888999999999999999999999988 332 1 23433 222234567 478888888
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=6e-06 Score=78.10 Aligned_cols=103 Identities=9% Similarity=0.039 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 513 ~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
......+.|+..+...|+++.|..+|+-++..+|.++..|+++|.++...|++++|+..|.+++.+ +|+++......+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag 110 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 456677788888889999999999999999999999999999999999999999999999999998 788766554333
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 593 SKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
..+. ..|+.+.|+..|+.+|..|-.
T Consensus 111 ~c~L---~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 111 ECYL---ACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHH---HcCCHHHHHHHHHHHHHHhcc
Confidence 3333 568899999999999998843
No 139
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=0.00015 Score=92.17 Aligned_cols=315 Identities=12% Similarity=0.056 Sum_probs=207.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-----ChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhh
Q 002477 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYK-----TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (917)
Q Consensus 425 lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~-----~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~ 499 (917)
+-...+..+...|++++|...+..+...... ...-...+....+.+....|+++.|...+++++...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~------ 484 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL------ 484 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------
Confidence 4455566667889999999999988764221 11112234444566778899999999999999874220
Q ss_pred hhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--C----HHHHHHHHHHHHHccCHHHHHHHHH
Q 002477 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--T----PQIIINYALLLEEHKYFEDAFRVYE 573 (917)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~--~----~~~~~~~a~~~~~~g~~e~A~~~~e 573 (917)
+. .+.....+...+.++...|+++.|...|++++..... . ..+..+++..+...|+++.|...++
T Consensus 485 ---~~------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 485 ---TW------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQE 555 (903)
T ss_pred ---cc------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00 0001223455667778899999999999999976332 1 2355678999999999999999999
Q ss_pred HHhhccCC---CC---hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC---CcHHHHHHHHHHHHHhCCHHHHH
Q 002477 574 RGVKIFKY---PH---VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD---AVKPLYLQYAKLEEDYGLAKRAM 644 (917)
Q Consensus 574 ral~~f~~---P~---~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~---~~~~l~~~~a~~e~~~g~~~~A~ 644 (917)
+++.+... +. ...++. .+.... +..|++++|+..+.+++...... .....+...+.+....|+++.|.
T Consensus 556 ~al~~~~~~~~~~~~~~~~~~~-~la~~~--~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 556 KAFQLIEEQHLEQLPMHEFLLR-IRAQLL--WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred HHHHHHHHhccccccHHHHHHH-HHHHHH--HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99986321 11 111121 111122 24578999999999998763321 12445666888888999999999
Q ss_pred HHHHHHHhhCCCCChH--HHH---HHHHHHHHHhcCcchHHHHHHHHHHhCCCCch--HHHHHHHHHHHHHHcCChhHHH
Q 002477 645 KVYDQATKAVPNHEKL--GMY---EIYIARAAEIFGVPKTREIYEQAIESGLPDKD--VKAMCLKYAELEKSLGEIDRAR 717 (917)
Q Consensus 645 ~~y~~al~~~p~~~~~--~l~---~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~--~~~~~l~~a~le~~~g~~~~Ar 717 (917)
..++++....+..... +.. ...+......|+.+.|..+....... .+... ....+...+.++...|+.++|.
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998764432111 111 11112223467788888887765543 22111 1123467788889999999999
Q ss_pred HHHHHHHccCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 718 GIYVFASQFADPR----SDTEFWNRWHEFEVNHGNEDTFREMLRI 758 (917)
Q Consensus 718 ~i~~~a~~~~~P~----~~~~~w~~~~~fe~~~G~~~~a~~~lr~ 758 (917)
.+|++++...... ........+.......|+.+.|...++.
T Consensus 712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998763221 1224555677778899999999999953
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.39 E-value=5.2e-06 Score=92.33 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 002477 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (917)
Q Consensus 466 ~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~ 545 (917)
.-|......|+++.|+..|++++...| .+..+|..++.++...|+++.|...+++++.++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P--------------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP--------------------NNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345555666777777777777776644 356677777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHH
Q 002477 546 IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588 (917)
Q Consensus 546 p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw 588 (917)
|.++.+|+++|.++...|++++|...|++++.+ +|++..+.
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~ 107 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFT 107 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 777777777777777777777777777777776 56655443
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=7.2e-06 Score=77.58 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
+...|+.++-++...|++.+|+..|.+++.++|++|..+.+.|..+...|+.+.|++.|+.+|..
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555566666666666666666666666666666666666666666666666664
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.31 E-value=1.2e-05 Score=89.58 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=55.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCC
Q 002477 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (917)
Q Consensus 522 ~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~ 601 (917)
+......|+++.|+..|++++.++|.++.+|.++|.++...|++++|+..+++++.+ +|.+...|...+..+. ..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~---~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACM---KL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHH---Hh
Confidence 333445566666666666666666666666666666666666666666666666665 5555555544332222 33
Q ss_pred CChHHHHHHHHHHHHhCCc
Q 002477 602 TKLERARELFENAVETAPA 620 (917)
Q Consensus 602 ~~~e~Ar~lfe~al~~~p~ 620 (917)
|+++.|...|+++++..|.
T Consensus 84 g~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPG 102 (356)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5566666666666666665
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=8.4e-06 Score=70.67 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
|..+|..+...|+++.|...|+++++..|.+. .+|..++.++...+++++|...+++++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444455555555555555555555444443 44444555554445555555555544443
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.28 E-value=5.9e-05 Score=87.46 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=109.5
Q ss_pred hccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHhhc
Q 002477 512 HKSLRLWTFYVDLEESL-----GNLESTRAVYERILDLRIATPQIIINYALLLEEH--------KYFEDAFRVYERGVKI 578 (917)
Q Consensus 512 ~~~~~~w~~~~~l~~~~-----g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~--------g~~e~A~~~~eral~~ 578 (917)
+.++..|-.|....... +....|+.+|+++++++|+++.+|-.++..+... .....+....++++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 35778887777654332 3478999999999999999998887766655432 2345667777777765
Q ss_pred cCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 579 FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 579 f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
-.+|....++..+..... ..+++++|...|++|++..|. ...|..+|+++...|+.++|...|++|+..+|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~---~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQAL---VKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 335555555655432222 457899999999999999985 57899999999999999999999999999999987
Q ss_pred hHH
Q 002477 659 KLG 661 (917)
Q Consensus 659 ~~~ 661 (917)
...
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 543
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.28 E-value=3e-06 Score=69.90 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhccCCC
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK-YFEDAFRVYERGVKIFKYP 582 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g-~~e~A~~~~eral~~f~~P 582 (917)
++..|..++..+...|++++|+..|+++++++|.++.+|.++|.++...| ++++|++.|++++++ +|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l--~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL--DP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc--Cc
Confidence 46788899999999999999999999999999999999999999999998 799999999999987 55
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=1.1e-05 Score=69.79 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002477 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (917)
Q Consensus 464 w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~ 543 (917)
|...+..+...|++++|+.++++++...| .+..+|..++.++...|+++.|...|++++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--------------------DNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555554432 1334555555555555555555555555555
Q ss_pred ccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 544 ~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
..|.++.++..++.++...|+++.|...+++++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 55555555555555555555555555555555543
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=1.8e-05 Score=72.84 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~ 503 (917)
..++..|..+...|+++.|...|++++..+|.++. ...++..++.++.+.|+++.|+..|++++...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------- 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------- 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----------
Confidence 44566666666666666666666666665554421 1245555666666666666666666666654320
Q ss_pred CchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHH
Q 002477 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (917)
Q Consensus 504 ~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~ 550 (917)
.+....+|...+.++...|+.+.|...|+++++..|.++.
T Consensus 72 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 72 -------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred -------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 0112345555556666666666666666666666665544
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.24 E-value=0.0068 Score=64.61 Aligned_cols=297 Identities=20% Similarity=0.174 Sum_probs=213.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhh
Q 002477 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (917)
Q Consensus 432 ~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~ 511 (917)
+-...||-..||..-.++-+.-..+.. .-+.+.-++.-+-.|+++.|++-|+-++..|..
T Consensus 93 iAagAGda~lARkmt~~~~~llssDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt------------------ 152 (531)
T COG3898 93 IAAGAGDASLARKMTARASKLLSSDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDDPET------------------ 152 (531)
T ss_pred hhhccCchHHHHHHHHHHHhhhhccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH------------------
Confidence 344568889999988887654333322 245555566667789999999999999887652
Q ss_pred hccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc-CCCChHHH-HH
Q 002477 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF-KYPHVKDI-WV 589 (917)
Q Consensus 512 ~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f-~~P~~~~l-w~ 589 (917)
....+-..|+.. ...|..+.|+..-+++-.+-|.-+-++...-.-....|+++.|+++........ -.++..+- --
T Consensus 153 -RllGLRgLyleA-qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rA 230 (531)
T COG3898 153 -RLLGLRGLYLEA-QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRA 230 (531)
T ss_pred -HHHhHHHHHHHH-HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHH
Confidence 112333344432 457999999999999999988888788777777788999999999987766531 12332211 11
Q ss_pred HHH-HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 002477 590 TYL-SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (917)
Q Consensus 590 ~yl-~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~ 668 (917)
.++ .+.... -..+...|++.-.+++++.|+ -.+.-+.-+..+.+.|+..++-.+++.+.+..|.. .++..|+.
T Consensus 231 vLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pd--lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~ia~lY~~ 304 (531)
T COG3898 231 VLLTAKAMSL-LDADPASARDDALEANKLAPD--LVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DIALLYVR 304 (531)
T ss_pred HHHHHHHHHH-hcCChHHHHHHHHHHhhcCCc--cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HHHHHHHH
Confidence 111 122222 235789999999999999998 67888888999999999999999999999999863 36667766
Q ss_pred HHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc-C
Q 002477 669 RAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH-G 747 (917)
Q Consensus 669 ~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~-G 747 (917)
.+.|+....|--=-+.++.-.|++. +..+..+..-..-|++..||.--+.+... .|+ ..++-.+.++|... |
T Consensus 305 --ar~gdta~dRlkRa~~L~slk~nna--es~~~va~aAlda~e~~~ARa~Aeaa~r~-~pr--es~~lLlAdIeeAetG 377 (531)
T COG3898 305 --ARSGDTALDRLKRAKKLESLKPNNA--ESSLAVAEAALDAGEFSAARAKAEAAARE-APR--ESAYLLLADIEEAETG 377 (531)
T ss_pred --hcCCCcHHHHHHHHHHHHhcCccch--HHHHHHHHHHHhccchHHHHHHHHHHhhh-Cch--hhHHHHHHHHHhhccC
Confidence 4556665555444444544145554 55677777777889999999999999877 775 56788888887776 9
Q ss_pred CHHHHHHHHHHHhHhhhc
Q 002477 748 NEDTFREMLRIKRSVSAS 765 (917)
Q Consensus 748 ~~~~a~~~lr~~r~~~~~ 765 (917)
+..++|..+ .+.|.+.
T Consensus 378 Dqg~vR~wl--Aqav~AP 393 (531)
T COG3898 378 DQGKVRQWL--AQAVKAP 393 (531)
T ss_pred chHHHHHHH--HHHhcCC
Confidence 999999988 5666554
No 149
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.23 E-value=7.8e-05 Score=80.10 Aligned_cols=247 Identities=13% Similarity=0.056 Sum_probs=166.2
Q ss_pred hcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHH
Q 002477 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552 (917)
Q Consensus 473 ~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~ 552 (917)
-.|+|..+++-.+ ....++. ............+..+|+++.+..-. -.-.+....++
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~-------------------~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~~~~~l~av 69 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPE-------------------NKLERDFYQYRSYIALGQYDSVLSEI---KKSSSPELQAV 69 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCH-------------------HHHHHHHHHHHHHHHTT-HHHHHHHS----TTSSCCCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCch-------------------hHHHHHHHHHHHHHHcCChhHHHHHh---ccCCChhHHHH
Confidence 4688888887666 2233220 13445555666677788876544322 22222234677
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHH
Q 002477 553 INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (917)
Q Consensus 553 ~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~ 632 (917)
..|+.++...+.-+.++..++..+.- ..+....++........ ...|+++.|..++.++ . +.+......+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~-~~~~~~~~~~~~~A~i~--~~~~~~~~AL~~l~~~-----~--~lE~~al~Vq 139 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLAD-QAGESNEIVQLLAATIL--FHEGDYEEALKLLHKG-----G--SLELLALAVQ 139 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCT-S---CHHHHHHHHHHHH--CCCCHHHHHHCCCTTT-----T--CHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHh-ccccccHHHHHHHHHHH--HHcCCHHHHHHHHHcc-----C--cccHHHHHHH
Confidence 78888887666677777776666542 12222344443332222 3567788777777654 2 5677778888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC
Q 002477 633 LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE 712 (917)
Q Consensus 633 ~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~ 712 (917)
++.+.|+.+.|.+.++.+-+...++.-..+...|+..+.....+..|.-+|++..+. .|... .+....|.....+|+
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~--~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTP--KLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SH--HHHHHHHHHHHHCT-
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCH--HHHHHHHHHHHHhCC
Confidence 999999999999999999888777666778888888755555699999999997665 55443 567788889999999
Q ss_pred hhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 002477 713 IDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNE-DTFREMLR 757 (917)
Q Consensus 713 ~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~-~~a~~~lr 757 (917)
+++|..++..|++. +|. +++++...+......|+. +.+.+.+.
T Consensus 217 ~~eAe~~L~~al~~-~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 217 YEEAEELLEEALEK-DPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHHHHHHHHHCCC--CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 99999999999987 898 889999999988888887 55665554
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=3.9e-05 Score=70.65 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh---HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCC-cH
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV---KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-VK 624 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~---~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~-~~ 624 (917)
+.+++..|..+.+.|++++|...|++++.. +|.+ ...+..++..+. ..++++.|...|++++...|... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYY---AQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHCCCCCccc
Confidence 356677777777777777777777777775 3433 233433333333 45667777777777777776631 24
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 625 ~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
.++..+|.++...|+.+.|...|+++++..|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 5677777777777888888888888887777754
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=0.0001 Score=73.14 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
.....+..+|..+...|++++|...|+++++..|... +...+|..+|.++.+.|++++|+..+++++...|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------- 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNP-------- 103 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------
Confidence 4566789999999999999999999999998766532 2247899999999999999999999999998755
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
.....+..++.++...|....+..-+++++. .+++|.+++++++..
T Consensus 104 ------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~-- 149 (172)
T PRK02603 104 ------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRL-- 149 (172)
T ss_pred ------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhh--
Confidence 3567788888888888887776666666553 257788888888886
Q ss_pred CCCh
Q 002477 581 YPHV 584 (917)
Q Consensus 581 ~P~~ 584 (917)
+|++
T Consensus 150 ~p~~ 153 (172)
T PRK02603 150 APNN 153 (172)
T ss_pred Cchh
Confidence 6765
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=7.7e-05 Score=71.73 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=89.2
Q ss_pred HcCCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCC
Q 002477 527 SLGNLESTRAVYERILDLRIATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (917)
Q Consensus 527 ~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~ 603 (917)
..++...+...+++++...|.++ .+.+.+|..+...|++++|...|+.++...++|....+-...+..+. ...++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~--~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL--LQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH--HHcCC
Confidence 46888899999999999999883 56778899999999999999999999985322322222221222222 25678
Q ss_pred hHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002477 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT 651 (917)
Q Consensus 604 ~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al 651 (917)
+++|...++.. ...+ .....+...|.++...|++++|+..|++|+
T Consensus 101 ~d~Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999663 2222 256788889999999999999999999875
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=0.00016 Score=77.90 Aligned_cols=214 Identities=16% Similarity=0.164 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcC
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~--~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~ 503 (917)
+..-|..|...|++++|...|.++.... ..+...-+..+...+.++.+. ++++|+..|++|+.+-. ..|
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~--------~~G 108 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR--------EAG 108 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH--------HCT
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH--------hcC
Confidence 3334556677788888888888876543 334444556777777776555 99999999999986411 001
Q ss_pred CchhhhhhhccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 002477 504 NEPVQMKLHKSLRLWTFYVDLEESL-GNLESTRAVYERILDLRI--AT----PQIIINYALLLEEHKYFEDAFRVYERGV 576 (917)
Q Consensus 504 ~~~~~~~~~~~~~~w~~~~~l~~~~-g~~~~A~~~y~~al~~~p--~~----~~~~~~~a~~~~~~g~~e~A~~~~eral 576 (917)
+ ...........+.+++.. |+++.|+..|++++++.- .. ...+.+.|.++.+.|++++|+.+|++..
T Consensus 109 ~------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 109 R------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp -------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred c------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 112456778888899888 999999999999999832 22 2467889999999999999999999998
Q ss_pred hccC-CCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCC-cHH--HHHHHHHHHHH--hCCHHHHHHHHHH
Q 002477 577 KIFK-YPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-VKP--LYLQYAKLEED--YGLAKRAMKVYDQ 649 (917)
Q Consensus 577 ~~f~-~P~-~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~-~~~--l~~~~a~~e~~--~g~~~~A~~~y~~ 649 (917)
.... .|. ...+-..|+...+-+...+++..|+..|++....+|.-. +.+ +...+...... ...+..|+.-|.+
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 7531 121 122333334334444456789999999999988887531 222 33333333332 3455666666665
Q ss_pred HHhhC
Q 002477 650 ATKAV 654 (917)
Q Consensus 650 al~~~ 654 (917)
..+++
T Consensus 263 ~~~ld 267 (282)
T PF14938_consen 263 ISRLD 267 (282)
T ss_dssp SS---
T ss_pred cCccH
Confidence 54443
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.6e-05 Score=77.61 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc---cHH
Q 002477 43 KKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK---FIT 119 (917)
Q Consensus 43 ~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~---~~~ 119 (917)
.....-.|.-|.++|++.+-|..+....+ ..+++..|...|.+|++..|++|.+|..|++.++.+. ...
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym--------~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYM--------ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHH--------HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccH
Confidence 34445567888888888888888887775 6677888888888888888888888888888776544 345
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC
Q 002477 120 KARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH 172 (917)
Q Consensus 120 ~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~ 172 (917)
+++.+|+++|+.+| .+.+.-.+++.-+...|++ ..|...|+..|+..|.+
T Consensus 211 ~a~~ll~~al~~D~--~~iral~lLA~~afe~g~~-~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 211 KARALLRQALALDP--ANIRALSLLAFAAFEQGDY-AEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCC
Confidence 78888888888888 4555545555555566776 78888888888887765
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.09 E-value=8.1e-06 Score=67.29 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCC
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPS 492 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~-~~~~A~~~l~~al~~~~ 492 (917)
+...|..+|..+...|++++|...|+++++.+|.++ .+|+.+|.++...| ++++|+..+++++++.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357899999999999999999999999999999998 99999999999999 79999999999997654
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.08 E-value=1.4e-05 Score=65.06 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh
Q 002477 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (917)
Q Consensus 520 ~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~ 584 (917)
..+..+...|++++|+..|++++...|.++.+|..+|.++...|++++|...|+++++. +|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 35666777888888888888888888888888888888888888888888888888886 6664
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.08 E-value=0.00011 Score=85.35 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred CcHHHHHHHHH--HHHhc---CCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 002477 421 KPHTLWVAFAK--LYETY---KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH--------KNFKGALELMRRA 487 (917)
Q Consensus 421 ~~~~lw~~~a~--~~~~~---g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~--------~~~~~A~~~l~~a 487 (917)
.+...|-.|.. .|... +++..|+..|++|++.+|.+. ..|..++..+... .....+....+++
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a----~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT----YAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45566654443 33333 347899999999999999987 5554443332221 1245566666666
Q ss_pred HcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHH
Q 002477 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFED 567 (917)
Q Consensus 488 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~ 567 (917)
+..+. .+..+.++..++-.....|+++.|...|++++.++| +..+|+.+|.++...|++++
T Consensus 411 ~al~~------------------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 411 VALPE------------------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred hhccc------------------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHH
Confidence 65432 223567788888888888999999999999999999 57899999999999999999
Q ss_pred HHHHHHHHhhccCCCChHH
Q 002477 568 AFRVYERGVKIFKYPHVKD 586 (917)
Q Consensus 568 A~~~~eral~~f~~P~~~~ 586 (917)
|...|++|+.+ +|....
T Consensus 472 A~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 472 AADAYSTAFNL--RPGENT 488 (517)
T ss_pred HHHHHHHHHhc--CCCCch
Confidence 99999999998 776643
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.05 E-value=0.0011 Score=69.43 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc-HHH
Q 002477 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPL 626 (917)
Q Consensus 548 ~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~-~~l 626 (917)
++..++..|.-....|++++|+..|++.+.. +|.....-...+......+..++++.|...|++.++..|++.. ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4555556666666666666666666666665 4443221111111112223456666677777776666666422 334
Q ss_pred HHHHHHHHHH------------------hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 002477 627 YLQYAKLEED------------------YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (917)
Q Consensus 627 ~~~~a~~e~~------------------~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~ 688 (917)
++..|..... +.....|+..|++.++..|+++-...-...+. .+-.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~----------------~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLV----------------FLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------------HHHH
Confidence 4444443221 12245677888888888888653322111111 1111
Q ss_pred hCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 689 SGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS--DTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 689 ~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~--~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
....--+..|.++.+.|.+..|..-|+.+++. -|++ ..+..-....-....|..+.+...++
T Consensus 173 ------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 173 ------RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred ------HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 11122345677777788888888888888776 4542 23555566666667777777776663
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.03 E-value=0.00016 Score=71.54 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHH
Q 002477 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (917)
Q Consensus 439 ~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 518 (917)
+..++..+.+.++.... +..+..|+.++......|++++|...|++++...+. .+....+|
T Consensus 15 ~~~~~~~l~~~~~~~~~--~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----------------~~~~~~~~ 75 (168)
T CHL00033 15 FTIVADILLRILPTTSG--EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-----------------PYDRSYIL 75 (168)
T ss_pred cccchhhhhHhccCCch--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-----------------chhhHHHH
Confidence 33444444444433222 223466677777777777777777777777655320 00123466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 002477 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (917)
Q Consensus 519 ~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~ 560 (917)
..++.++...|++++|+..|++++.+.|..+..+.+++.++.
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777776666
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00012 Score=81.16 Aligned_cols=128 Identities=14% Similarity=0.072 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhc
Q 002477 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (917)
Q Consensus 423 ~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~ 502 (917)
..+--.+..+....+.++.|+.+|++..+.+| .++..+|.+++..++-.+|++++.+++..+|
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p---------- 231 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDP-------EVAVLLARVYLLMNEEVEAIRLLNEALKENP---------- 231 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------
Confidence 34555666777778999999999999988775 4556688888889999999999999997755
Q ss_pred CCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 503 ~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
.+..++...++++.+.++++.|..+.++++.+.|.+-..|..+|..|...|+++.|+..+..+--
T Consensus 232 ----------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 232 ----------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 47889999999999999999999999999999999999999999999999999999988875544
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.00032 Score=75.62 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002477 522 VDLEESLGNLESTRAVYERILDLRI--AT----PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (917)
Q Consensus 522 ~~l~~~~g~~~~A~~~y~~al~~~p--~~----~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~ 595 (917)
+..+...|++++|...|.++.+..- .+ ...+...+.++.+. ++++|+..|++++.++.....+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~-------- 112 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ-------- 112 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH--------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH--------
Confidence 3344556677777777777665421 11 12344444444433 666666666666655322222111
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCCCCh----HHHHHHHHHHH
Q 002477 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY-GLAKRAMKVYDQATKAVPNHEK----LGMYEIYIARA 670 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~-g~~~~A~~~y~~al~~~p~~~~----~~l~~~~i~~~ 670 (917)
....+..+|.+++.. |++++|+..|++|+.....+.. ..++.......
T Consensus 113 ---------------------------aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 113 ---------------------------AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp ---------------------------HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 123344444444444 4455555555555444322211 11222222223
Q ss_pred HHhcCcchHHHHHHHHHHhC----CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 671 AEIFGVPKTREIYEQAIESG----LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 671 ~~~~~~~~ar~~ye~al~~~----~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
...+++++|..+|++.+... +....+...++.-+-+....|+...|+..|++..+. +|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ-DPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-STT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Confidence 34455555555555554430 111223344555555566678888888888888766 564
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.02 E-value=2.8e-05 Score=63.24 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 002477 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (917)
Q Consensus 466 ~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~ 545 (917)
..|..+.+.|++++|+..|++++...| .+..+|..++.++...|++++|+.+|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P--------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP--------------------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST--------------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888999999999999999998866 589999999999999999999999999999999
Q ss_pred CCCH
Q 002477 546 IATP 549 (917)
Q Consensus 546 p~~~ 549 (917)
|++|
T Consensus 62 P~~p 65 (65)
T PF13432_consen 62 PDNP 65 (65)
T ss_dssp TT-H
T ss_pred cCCC
Confidence 9886
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00026 Score=68.09 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccH
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (917)
.++...+...++...+..|.++- -...++.+|.+....|++++|...|+.++...+.. .-..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~y-a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-----------------~l~~ 85 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPY-AALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-----------------ELKP 85 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-----------------HHHH
Confidence 45555555566666655555421 11344445555556666666666666665432200 0012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral 576 (917)
.++..++.++...|++++|...++.+ .-.+-.+.++...|.++...|++++|+..|++++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 33444555555566666666665442 2223334455555666666666666666666553
No 164
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=0.00062 Score=66.67 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH-HHHHHHHH
Q 002477 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK-DIWVTYLS 593 (917)
Q Consensus 515 ~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~-~lw~~yl~ 593 (917)
..+.+..+.++.+.|-..-||.-|.+++.++|+.|.+++-+|..+...|+|+.|...|...+++ +|... ...|.-+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~ 142 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhcccee
Confidence 4556666777788888899999999999999999999999999999999999999999999998 88763 33332221
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 002477 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM-KVYDQATKAVPNHEKLGMYEIYIARAAE 672 (917)
Q Consensus 594 ~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~-~~y~~al~~~p~~~~~~l~~~~i~~~~~ 672 (917)
+. -+|+++-|.+-|.+--+.+|.+.-..+|+.+.. +.-+..+|. .+.+|+-... ...|=|.+.-. -
T Consensus 143 -~Y---Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d---~e~WG~~iV~~---y 209 (297)
T COG4785 143 -LY---YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSD---KEQWGWNIVEF---Y 209 (297)
T ss_pred -ee---ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhcc---HhhhhHHHHHH---H
Confidence 21 247899999999999999998766677776543 344566665 4455554432 24444433322 1
Q ss_pred hcCcchHHHHHHHHHHhCCCCch-----HHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 673 IFGVPKTREIYEQAIESGLPDKD-----VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 673 ~~~~~~ar~~ye~al~~~~p~~~-----~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
+|.+ ....+++++..- ..++. .++.++.+|..+...|+++.|..+|+-|+..
T Consensus 210 Lgki-S~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 210 LGKI-SEETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred Hhhc-cHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2222 234456666654 33332 2467888999999999999999999999865
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.00021 Score=70.94 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHH
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~-~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~ 627 (917)
...+.++|..+...|++++|+..|++++...++|. ...+|..++..+. ..|++++|+..|++++...|. ....+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~--~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---SNGEHDKALEYYHQALELNPK--QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcc--cHHHH
Confidence 44566677777777777777777777776522221 1233443332222 446677777777777777776 56666
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 002477 628 LQYAKLEEDYGLAKRAMKVYDQA 650 (917)
Q Consensus 628 ~~~a~~e~~~g~~~~A~~~y~~a 650 (917)
..+|.++...|....+..-++.+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH
Confidence 66777776666655554444433
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=0.00061 Score=69.55 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
..++..+......|++..|+..|++++...|.+ +.+.+.+|..+...|+++.|...|++.+..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555666666666666666665554 345566666666666666666666666664
No 167
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.94 E-value=1.8e-05 Score=80.98 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=87.4
Q ss_pred CcchHHHHHHhhCCCChHHHHHHHHHH-HhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 002477 11 EDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (917)
Q Consensus 11 ~~~~~~E~~l~~~P~~~~~W~~yi~~~-~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~ 89 (917)
..-..|-+.-.+.|++++.|..|+.+. +.+.+..+..+|-.+|+..|.++++|..-..++.. ...+++.+++
T Consensus 91 k~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~-------~~ani~s~Ra 163 (435)
T COG5191 91 KKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF-------EIANIESSRA 163 (435)
T ss_pred eeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh-------hhccHHHHHH
Confidence 344557778888999999999999965 45578888899999999999999999976666542 4567899999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHH
Q 002477 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALC 130 (917)
Q Consensus 90 ~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~ 130 (917)
+|.++|..+|.+|++|..|..+++. -.-+++.|.++
T Consensus 164 ~f~~glR~N~~~p~iw~eyfr~El~-----yiTKL~~R~~K 199 (435)
T COG5191 164 MFLKGLRMNSRSPRIWIEYFRMELM-----YITKLINRREK 199 (435)
T ss_pred HHHhhhccCCCCchHHHHHHHHHHH-----HHHHHHhhHHH
Confidence 9999999999999999999998742 33455555543
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00029 Score=69.58 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~ 590 (917)
....|...+.++...|+++.|...|++++.+.|++ +.+|.++|.++...|++++|+..|++++.+ .|.....|..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence 46788888888899999999999999999887653 458899999999999999999999999997 6777666654
Q ss_pred H
Q 002477 591 Y 591 (917)
Q Consensus 591 y 591 (917)
.
T Consensus 112 l 112 (168)
T CHL00033 112 M 112 (168)
T ss_pred H
Confidence 3
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.92 E-value=0.0046 Score=62.99 Aligned_cols=203 Identities=20% Similarity=0.242 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 423 HTLWVAFAKLYETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 423 ~~lw~~~a~~~~~~g~~~~A~~i~e~al~--~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
.......+..+...+.+..+...+..++. ..+... ..+...+......+++..+...+..++...+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 126 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLA----EALLNLGLLLEALGKYEEALELLEKALALDP-------- 126 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--------
Confidence 45667777778888888888888888886 444444 7788888888888888889998888887644
Q ss_pred hcCCchhhhhhhccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVD-LEESLGNLESTRAVYERILDLRI---ATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~-l~~~~g~~~~A~~~y~~al~~~p---~~~~~~~~~a~~~~~~g~~e~A~~~~eral 576 (917)
.....+..... ++...|+++.|...|++++...| .........+..+...+.++.+...+.+++
T Consensus 127 ------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 127 ------------DPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred ------------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 11233333333 67778888888888888877655 234555666666777788888888888888
Q ss_pred hccCCCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002477 577 KIFKYPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (917)
Q Consensus 577 ~~f~~P~-~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p 655 (917)
.. .|. ....+......+. ..++++.|...+..++...|. ....+...+..+...|....+...+.+++...|
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYL---KLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hh--CcccchHHHHHhhHHHH---HcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 86 444 3333433322222 234678888888888888776 344455555554466778888888888887777
Q ss_pred C
Q 002477 656 N 656 (917)
Q Consensus 656 ~ 656 (917)
.
T Consensus 268 ~ 268 (291)
T COG0457 268 D 268 (291)
T ss_pred c
Confidence 5
No 170
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.87 E-value=0.00087 Score=71.44 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=158.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh-hcCCchhhhh
Q 002477 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA-ADGNEPVQMK 510 (917)
Q Consensus 432 ~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~-~~~~~~~~~~ 510 (917)
-.++.|+.......|+.|+++.-.+...+..+|+++++.+.-.++|++|++.-.-=+.+.. ... -.|
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar-----~lgdklG------- 93 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR-----LLGDKLG------- 93 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH-----Hhcchhc-------
Confidence 3456789999999999999998777777888999999988888889998886543222100 000 001
Q ss_pred hhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHccC-------------HHHHHHH
Q 002477 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR------IATPQIIINYALLLEEHKY-------------FEDAFRV 571 (917)
Q Consensus 511 ~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~------p~~~~~~~~~a~~~~~~g~-------------~e~A~~~ 571 (917)
..+.--.+++.+...|.+++|.-+..+-+++- .....+++|+|.+|...|. .+++...
T Consensus 94 ---EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 94 ---EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred ---cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 12333356667777888999888888777652 2235689999999987763 3556666
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHH----------HhCCCChHHHHHHHHHHHHhCC---cC-CcHHHHHHHHHHHHHh
Q 002477 572 YERGVKIFKYPHVKDIWVTYLSKFVK----------RYGKTKLERARELFENAVETAP---AD-AVKPLYLQYAKLEEDY 637 (917)
Q Consensus 572 ~eral~~f~~P~~~~lw~~yl~~~~~----------~~~~~~~e~Ar~lfe~al~~~p---~~-~~~~l~~~~a~~e~~~ 637 (917)
++++++.| -.+.++.....+.+.. +|-.|+++.|...-++-+.... +. .....+.++|..+.-.
T Consensus 171 l~~Av~fy--~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 171 LENAVKFY--MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHH--HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 66666642 2222222221111110 1113566666666655554321 10 1134566666666667
Q ss_pred CCHHHHHHHHHHHHhhCC--CCChHHHHHHHH--HHHHHhcCcchHHHHHHHHHHh--CCCCc-hHHHHHHHHHHHHHHc
Q 002477 638 GLAKRAMKVYDQATKAVP--NHEKLGMYEIYI--ARAAEIFGVPKTREIYEQAIES--GLPDK-DVKAMCLKYAELEKSL 710 (917)
Q Consensus 638 g~~~~A~~~y~~al~~~p--~~~~~~l~~~~i--~~~~~~~~~~~ar~~ye~al~~--~~p~~-~~~~~~l~~a~le~~~ 710 (917)
|+++.|.+.|++++.+.- .+........|. ..+.-...+.+|+..+.+-+.. .+.+. --...|..++..+..+
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777777776654321 111222222221 1112234556666666654443 01000 0013456666666667
Q ss_pred CChhHHHHHHHHHHcc
Q 002477 711 GEIDRARGIYVFASQF 726 (917)
Q Consensus 711 g~~~~Ar~i~~~a~~~ 726 (917)
|+.++|....+..++.
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7777777776666665
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.86 E-value=0.029 Score=60.04 Aligned_cols=260 Identities=17% Similarity=0.132 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhccCCChhhhH
Q 002477 385 VEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY---ETYKDIANARVIFDKAVQVNYKTVDHLA 461 (917)
Q Consensus 385 ~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~---~~~g~~~~A~~i~e~al~~~~~~~~~l~ 461 (917)
++..-....+.+|+.+.+.+-|+-.+. +|. .--..+=.+| .+.|+.+.|+.+-+++-.+-|.-+
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~--dPE-------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~---- 188 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD--DPE-------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP---- 188 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc--ChH-------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc----
Confidence 334445567778999999999998773 451 1112222223 257999999999999999888766
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC---CChhHHHhhhhcCCchhhhhhhccHHHHHHHHHH-HHHcCCHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAE---PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL-EESLGNLESTRAV 537 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l-~~~~g~~~~A~~~ 537 (917)
-.|....+-.+..|+++.|+++.+..... .+...+ ..+.-..-+.. ..-..+...|+..
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae-----------------R~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE-----------------RSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH-----------------HHHHHHHHHHHHHHhcCChHHHHHH
Confidence 55555555557889999999999876543 111111 11111112222 2223468899999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 002477 538 YERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE- 616 (917)
Q Consensus 538 y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~- 616 (917)
-..++++.|+....-.--+..+.+.|+..++-+++|.+=+. .|+ ++||..|... ..|+ .+.+-++++-.
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePH-P~ia~lY~~a-----r~gd--ta~dRlkRa~~L 321 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPH-PDIALLYVRA-----RSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCC-hHHHHHHHHh-----cCCC--cHHHHHHHHHHH
Confidence 99999999999888888899999999999999999999997 443 4678887531 2332 33333333322
Q ss_pred --hCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCc
Q 002477 617 --TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 617 --~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~ 694 (917)
.-|+ +.+..+..+..-. .-+++..||.--+.++.. .|..
T Consensus 322 ~slk~n--naes~~~va~aAl------------------------------------da~e~~~ARa~Aeaa~r~-~pre 362 (531)
T COG3898 322 ESLKPN--NAESSLAVAEAAL------------------------------------DAGEFSAARAKAEAAARE-APRE 362 (531)
T ss_pred HhcCcc--chHHHHHHHHHHH------------------------------------hccchHHHHHHHHHHhhh-Cchh
Confidence 2333 3333333333322 334555566666666665 5554
Q ss_pred hHHHHHHHHHHHHHHc-CChhHHHHHHHHHHcc
Q 002477 695 DVKAMCLKYAELEKSL-GEIDRARGIYVFASQF 726 (917)
Q Consensus 695 ~~~~~~l~~a~le~~~-g~~~~Ar~i~~~a~~~ 726 (917)
. .++.+++++... |+-.++|.++.+++.-
T Consensus 363 s---~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 S---AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h---HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 466677776654 8888888888888765
No 172
>PRK11906 transcriptional regulator; Provisional
Probab=97.84 E-value=0.0011 Score=73.41 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002477 530 NLESTRAVYERIL---DLRIATPQIIINYALLLEEH---------KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK 597 (917)
Q Consensus 530 ~~~~A~~~y~~al---~~~p~~~~~~~~~a~~~~~~---------g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~ 597 (917)
..+.|..+|.+++ +++|....++..+|.++... ....+|.+.-++|+++ +|.+.......+ ....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g-~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMG-LITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHH-HHHH
Confidence 4578888999999 88998887766655544432 2456888999999998 787754333222 2111
Q ss_pred HhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcc
Q 002477 598 RYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP 677 (917)
Q Consensus 598 ~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~ 677 (917)
-.++++.|..+|++|+..+|+ ...+|+.+|.+..-.|+.++|+...++|++..|.-....+...++..+ -...++
T Consensus 350 --~~~~~~~a~~~f~rA~~L~Pn--~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~-~~~~~~ 424 (458)
T PRK11906 350 --LSGQAKVSHILFEQAKIHSTD--IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY-VPNPLK 424 (458)
T ss_pred --hhcchhhHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH-cCCchh
Confidence 124599999999999999999 899999999999999999999999999999999865556666666322 235667
Q ss_pred hHHHHHHHHHHh
Q 002477 678 KTREIYEQAIES 689 (917)
Q Consensus 678 ~ar~~ye~al~~ 689 (917)
.+..+|-+-.+.
T Consensus 425 ~~~~~~~~~~~~ 436 (458)
T PRK11906 425 NNIKLYYKETES 436 (458)
T ss_pred hhHHHHhhcccc
Confidence 777777665554
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=4.6e-05 Score=65.56 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHH
Q 002477 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 474 ~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
+|+++.|+.++++++...|. .+ +...|..++.++...|++++|..++++ ...+|.++....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 45667777777776655330 00 345566667777777777777777777 666666666666
Q ss_pred HHHHHHHHccCHHHHHHHHHHH
Q 002477 554 NYALLLEEHKYFEDAFRVYERG 575 (917)
Q Consensus 554 ~~a~~~~~~g~~e~A~~~~era 575 (917)
.+|..+...|++++|+++|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 6677777777777777776654
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00042 Score=76.99 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~ 596 (917)
+-..+..+....++++.|+.+|++..+.+ |.+..-+|.++...++-.+|++++.+++.. .|.+.+++......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 33344556666789999999999999866 467778899999999999999999999985 8999988887766555
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 597 KRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 597 ~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
..++++.|..+.+++++..|. ....|..++.+|...|+++.|+..+.
T Consensus 246 ---~k~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 246 ---SKKKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred ---hcCCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 567899999999999999999 78999999999999999999998777
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=6.7e-05 Score=64.57 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccH
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (917)
+|+++.|..+|+++++..|.++ -...|..+|.++.+.|++++|+.++++ ....+ .+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------------------~~~ 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------------------SNP 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------------------CHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------------------CCH
Confidence 5788888888888888877542 126677788888888888888888887 43322 345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
.....++.++..+|++++|+.+|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 66667788888888888888888764
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=6.5e-05 Score=61.61 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=58.2
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLR 146 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~ 146 (917)
..++++.|...|++++..+|+++.+|..++.+++++|+++.|+.++++++...| .++.+|.+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP--DNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT--THHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CHHHHHHHHhc
Confidence 357899999999999999999999999999999999999999999999999999 45777776654
No 177
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.002 Score=66.06 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=159.0
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHH
Q 002477 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (917)
Q Consensus 472 ~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~ 551 (917)
++...++.|++++..-....| ++....+.++.++-...++..|-.+|++.-.+.|...+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p--------------------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP--------------------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 566778899998887776544 466777788888888899999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH--HHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHH
Q 002477 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL--SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (917)
Q Consensus 552 ~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl--~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~ 629 (917)
.+-+|+.+...+.+.+|+.+...... .|. +.+.-+ ...+ .+..+++..+|.+.+|. |.........+
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D---~~~---L~~~~lqLqaAI-kYse~Dl~g~rsLveQl----p~en~Ad~~in 149 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLD---NPA---LHSRVLQLQAAI-KYSEGDLPGSRSLVEQL----PSENEADGQIN 149 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcC---CHH---HHHHHHHHHHHH-hcccccCcchHHHHHhc----cCCCccchhcc
Confidence 99999999999999999999877655 233 233222 1222 24667899999988875 54335678889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhC---CCCch-----------
Q 002477 630 YAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESG---LPDKD----------- 695 (917)
Q Consensus 630 ~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~---~p~~~----------- 695 (917)
.|.+..+.|+++.|++-|+.|++...-++ ...|++-+.. .+.+++..|.....+.|+.| .|.-.
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence 99999999999999999999998765543 3455555554 34467777766655555542 34321
Q ss_pred ------------HHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002477 696 ------------VKAMCLKYAELEKSLGEIDRARGIYVF 722 (917)
Q Consensus 696 ------------~~~~~l~~a~le~~~g~~~~Ar~i~~~ 722 (917)
..+....-+.++.+.|+++.|++.+..
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 112333345678899999999986653
No 178
>PRK11906 transcriptional regulator; Provisional
Probab=97.80 E-value=0.0006 Score=75.36 Aligned_cols=168 Identities=14% Similarity=0.084 Sum_probs=123.0
Q ss_pred CCChH---HHH--HHHHHHHHH--HhCCCChHHHHHHHHHHH---HhCCcCCcHHHHHHHHHHHHH---------hCCHH
Q 002477 581 YPHVK---DIW--VTYLSKFVK--RYGKTKLERARELFENAV---ETAPADAVKPLYLQYAKLEED---------YGLAK 641 (917)
Q Consensus 581 ~P~~~---~lw--~~yl~~~~~--~~~~~~~e~Ar~lfe~al---~~~p~~~~~~l~~~~a~~e~~---------~g~~~ 641 (917)
-|.+. +.| ..|+..... +......++|..+|.+|+ +..|. ....|-.++..+.. .....
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 35555 667 555533222 112235788999999999 88888 45555555544433 23456
Q ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHH
Q 002477 642 RAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYV 721 (917)
Q Consensus 642 ~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~ 721 (917)
.|...-++|++.+|.++......+.+. .-.++++.+...|++|+.. .|+.. ..|...|.+..-.|+.++|+..++
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~--~~~~~~~~a~~~f~rA~~L-~Pn~A--~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLIT--GLSGQAKVSHILFEQAKIH-STDIA--SLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH--HhhcchhhHHHHHHHHhhc-CCccH--HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 789999999999999887766666665 3456799999999999999 89876 678999999999999999999999
Q ss_pred HHHccCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 722 FASQFADPRS-DTEFWNRWHEFEVNHGNEDTFREML 756 (917)
Q Consensus 722 ~a~~~~~P~~-~~~~w~~~~~fe~~~G~~~~a~~~l 756 (917)
+|+++ +|.. ...+.+.|++.+..++-.+..+-.+
T Consensus 397 ~alrL-sP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQL-EPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHhcc-CchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 99999 7763 3477788887777776544444333
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.78 E-value=0.0025 Score=65.05 Aligned_cols=167 Identities=17% Similarity=0.183 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc-HH
Q 002477 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KP 625 (917)
Q Consensus 548 ~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~-~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~-~~ 625 (917)
++..++..|..+...|++.+|+..|++.+..++... ....+...+.. .+..++++.|+..|++-++..|.+.. ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a---~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYA---YYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH---HHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 567888899999999999999999999999744322 23333332222 23568999999999999999998633 34
Q ss_pred HHHHHHHH-----------HHHhCCHHHHHHHHHHHHhhCCCCChHH--------------HHHHH-HHHHHHhcCcchH
Q 002477 626 LYLQYAKL-----------EEDYGLAKRAMKVYDQATKAVPNHEKLG--------------MYEIY-IARAAEIFGVPKT 679 (917)
Q Consensus 626 l~~~~a~~-----------e~~~g~~~~A~~~y~~al~~~p~~~~~~--------------l~~~~-i~~~~~~~~~~~a 679 (917)
+++..|.. ....+...+|+..|+..++..|+++... -...+ ..++.+.+.+..|
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 55555544 3346788899999999999999976432 11222 2345678999999
Q ss_pred HHHHHHHHHhCCCCchHH-HHHHHHHHHHHHcCChhHHHH
Q 002477 680 REIYEQAIESGLPDKDVK-AMCLKYAELEKSLGEIDRARG 718 (917)
Q Consensus 680 r~~ye~al~~~~p~~~~~-~~~l~~a~le~~~g~~~~Ar~ 718 (917)
..-|+.+|+. .|+.... .....++..+.++|..+.|..
T Consensus 161 ~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 161 IIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999 8987653 567778889999999886654
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.77 E-value=0.00059 Score=72.02 Aligned_cols=110 Identities=11% Similarity=-0.001 Sum_probs=72.5
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhh
Q 002477 423 HTLWVAFAKLY-ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (917)
Q Consensus 423 ~~lw~~~a~~~-~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~ 501 (917)
...++..|..+ ...|++++|...|++.++..|.+. --..++..+|.++...|+++.|+..|++++...|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------
Confidence 45566666554 456788888888888888777652 11156666777777777777777777777755331
Q ss_pred cCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHH
Q 002477 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (917)
Q Consensus 502 ~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~ 550 (917)
.+..+.+|...+.++...|+.+.|+.+|+++++..|++..
T Consensus 213 ---------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 213 ---------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ---------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 2234566666666666777777777777777777666653
No 181
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00067 Score=73.16 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002477 463 IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (917)
Q Consensus 463 ~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al 542 (917)
....-+..+.+.|++..|...|++|+..... . ........+...---...+...+-++.+++.+..|+....++|
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~----~-~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEY----R-RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhc----c-ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344566777888888999999888865220 0 0000000111111123455566677777888888888888888
Q ss_pred hccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 543 DLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 543 ~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
.++|.++.+.+.-|+.+...|.++.|+..|++++++ .|.+..+-..++. +..+.. ...++.+.+|..++...+.
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~-l~~k~~-~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK-LKQKIR-EYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHhhcccc
Confidence 888888888888888888888888888888888886 7877766665543 222221 1245667777777766553
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.75 E-value=0.00011 Score=60.31 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=55.7
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHH
Q 002477 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (917)
Q Consensus 526 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~ 590 (917)
...|++++|...|++++...|.++.+++.+|.++.+.|++++|..++++++.. +|++..+|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999996 7887665543
No 183
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.75 E-value=0.058 Score=54.67 Aligned_cols=205 Identities=24% Similarity=0.298 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILD--LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~--~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~ 593 (917)
.............+.+..+...+...+. ..+.....+...+..+...+.+..+...+..++.....+.....+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG- 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH-
Confidence 4555556666677777777777777776 5566667777777777777778888888888877522221112111110
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCc-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHH
Q 002477 594 KFVKRYGKTKLERARELFENAVETAPA-DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIARAA 671 (917)
Q Consensus 594 ~~~~~~~~~~~e~Ar~lfe~al~~~p~-~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~-~~~~l~~~~i~~~~ 671 (917)
.+ ...++++.|...|++++...|. ......+...+......|....|+..+.+++...|.. ..... .......
T Consensus 139 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 213 (291)
T COG0457 139 AL---YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL--NLGLLYL 213 (291)
T ss_pred HH---HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH--HhhHHHH
Confidence 11 1456788888888888775552 1234555555665666788888888888888877762 22222 1222223
Q ss_pred HhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 672 ~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
..+.+..+...+..++.. .|... ..+...+......|..+.|...+.+++.. +|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALEL-DPDNA--EALYNLALLLLELGRYEEALEALEKALEL-DPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhh-CcccH--HHHhhHHHHHHHcCCHHHHHHHHHHHHHh-Ccc
Confidence 445677888888888887 66522 33444554444667788888888888877 553
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.0061 Score=63.87 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHH-HH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI---IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI-WV 589 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~l-w~ 589 (917)
++..++.-+.-....|+++.|+..|++++...|.++.+ .+.+|..+.+.++++.|...|++.++. +|++..+ +.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHH
Confidence 45556666666777899999999999999999988754 488999999999999999999999997 5554221 22
Q ss_pred HHHHHHHH---------Hh-----CCCC---hHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002477 590 TYLSKFVK---------RY-----GKTK---LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (917)
Q Consensus 590 ~yl~~~~~---------~~-----~~~~---~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~ 652 (917)
.|...... .+ ...+ ...|...|++.++..|+.. |..-++.. +...+.-+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~----ya~~A~~r---------l~~l~~~la 175 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ----YTTDATKR---------LVFLKDRLA 175 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----hHHHHHHH---------HHHHHHHHH
Confidence 22211110 00 0112 3467789999999999842 11111110 001111110
Q ss_pred hCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002477 653 AVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV-KAMCLKYAELEKSLGEIDRARGIYVFA 723 (917)
Q Consensus 653 ~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~-~~~~l~~a~le~~~g~~~~Ar~i~~~a 723 (917)
. ..+.+- .++.+.+.+..|..-++.+|+. .|+... .+.....+..+..+|..+.|..+....
T Consensus 176 ~----~e~~ia----~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 K----YELSVA----EYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred H----HHHHHH----HHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 011111 1234567778888888888887 776543 355666677888889988888876544
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.71 E-value=0.0099 Score=60.83 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=113.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH-HHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IWV 589 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~-lw~ 589 (917)
++..|+.-+.-....|++++|...|+.+....|.+ +++.+.++..+.+.++++.|+...+|-+.+ +|.+.. -|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHH
Confidence 56778788888889999999999999999998876 478999999999999999999999999998 555432 255
Q ss_pred HHHHHHHHHhC----CCC---hHHHHHHHHHHHHhCCcCCcHH---------------HHHHHHHHHHHhCCHHHHHHHH
Q 002477 590 TYLSKFVKRYG----KTK---LERARELFENAVETAPADAVKP---------------LYLQYAKLEEDYGLAKRAMKVY 647 (917)
Q Consensus 590 ~yl~~~~~~~~----~~~---~e~Ar~lfe~al~~~p~~~~~~---------------l~~~~a~~e~~~g~~~~A~~~y 647 (917)
.|+..+..... ..+ ...|..-|...|...|+..-.. -=+..|+++.+.|.+-.|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 56644432211 123 3456667777888899852111 1122445555666666666666
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCc
Q 002477 648 DQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 648 ~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~ 694 (917)
++.++..|+.....--..++..+-...|+....+-..+.|..+.|++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 66666655533322111222211222344444444555555534444
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00093 Score=72.10 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC----CCH-----------HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh
Q 002477 520 FYVDLEESLGNLESTRAVYERILDLRI----ATP-----------QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (917)
Q Consensus 520 ~~~~l~~~~g~~~~A~~~y~~al~~~p----~~~-----------~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~ 584 (917)
..++.+.+.|++..|...|++++..-. .++ .+++|+|.++...+.+..|+...++++.+ +|++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N 290 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNN 290 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCc
Confidence 456677888999999999999988633 121 25788888888888888888888888887 7777
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhhCCC
Q 002477 585 KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA-KRAMKVYDQATKAVPN 656 (917)
Q Consensus 585 ~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~-~~A~~~y~~al~~~p~ 656 (917)
......-+..+. ..++++.||..|.++++..|. ++.+-..++.+-.+...+ ++..++|.+++...+.
T Consensus 291 ~KALyRrG~A~l---~~~e~~~A~~df~ka~k~~P~--Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 291 VKALYRRGQALL---ALGEYDLARDDFQKALKLEPS--NKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hhHHHHHHHHHH---hhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 655544444333 557788888888888888888 677777777776664444 4457888888776654
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.0038 Score=59.92 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhc
Q 002477 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (917)
Q Consensus 423 ~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~ 502 (917)
..-.+.+|......|++.+|+..|++++.-.+-+. ..+.+.+++-....+.+..|...+++....||
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---------- 155 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---------- 155 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----------
Confidence 45567888888889999999999999998655432 27788888888888899999999999988877
Q ss_pred CCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 002477 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572 (917)
Q Consensus 503 ~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~ 572 (917)
-..++.....|+..+...|.+..|+..|+.++...| .|+..+.|+.++..+|...++..-|
T Consensus 156 --------a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 156 --------AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred --------ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345667777888888999999999999999998776 6788889999999988776665444
No 188
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.64 E-value=0.0048 Score=60.68 Aligned_cols=194 Identities=16% Similarity=0.094 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~ 503 (917)
.+...-|.+|-+.|-..-||--|.++|.+.|+-+ .++.-++-.+...|+++.|.+.|+..+...|.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---------- 131 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---------- 131 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhcccchHHHHHhhhHhccCCc----------
Confidence 3444455566667777888999999999999888 89988898889999999999999999988661
Q ss_pred CchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHHccCHHHHH-HHHHHHhhccC
Q 002477 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ--IIINYALLLEEHKYFEDAF-RVYERGVKIFK 580 (917)
Q Consensus 504 ~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~--~~~~~a~~~~~~g~~e~A~-~~~eral~~f~ 580 (917)
..-.....+-..---|++.-|..-+.+--.-+|++|- .|+-+. +..-++.+|. .+.+|+...
T Consensus 132 ----------y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~-- 196 (297)
T COG4785 132 ----------YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS-- 196 (297)
T ss_pred ----------chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc--
Confidence 1111111111112247888888888888888898884 454433 2233455554 455676664
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 002477 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD-----AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV 654 (917)
Q Consensus 581 ~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~-----~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~ 654 (917)
+.+-|-.++-.++. | ++ ....+|+++.....++ .-.+.|+.+|+.+...|+.++|..+|+-++..+
T Consensus 197 ---d~e~WG~~iV~~yL--g--ki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 197 ---DKEQWGWNIVEFYL--G--KI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred ---cHhhhhHHHHHHHH--h--hc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33456655543331 2 11 2345667766554332 124578888999888999999999999888653
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.64 E-value=0.0012 Score=69.74 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 527 SLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 527 ~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
..|++++|+..|++.+...|++ |.+++.+|.++...|++++|+..|++++..
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555555554 345555555555555555555555555553
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.60 E-value=0.0053 Score=58.92 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDL-RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~-~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~ 594 (917)
.-...++......|++.+|+..|++++.- .-.++.+.+.+++.....+++..|...++...+..+.-.+++-...|...
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 33445677778899999999999999863 55679999999999999999999999999998852111112223334443
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 595 ~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
+. .+|+++.|+..|+.+++..|. +..-..|+.++.++|..++|..-|.
T Consensus 170 la---a~g~~a~Aesafe~a~~~ypg---~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 170 LA---AQGKYADAESAFEVAISYYPG---PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HH---hcCCchhHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 43 568899999999999999987 6778889999999998777655444
No 191
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.031 Score=65.85 Aligned_cols=226 Identities=14% Similarity=0.140 Sum_probs=129.0
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhcc
Q 002477 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (917)
Q Consensus 435 ~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (917)
..+++..|..-..+.++..|+.. ..-.--|-...|.|..++|..+++..-..++ .+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--------------------~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG--------------------TD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC--------------------Cc
Confidence 34677778888888888777765 4444445556777888888866665433333 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCH----HHHHHHHHHHhhccCCCCh-HHHHH
Q 002477 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYF----EDAFRVYERGVKIFKYPHV-KDIWV 589 (917)
Q Consensus 515 ~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~----e~A~~~~eral~~f~~P~~-~~lw~ 589 (917)
......+-.++..+|..++|..+|++++...|. ......|=..+.+-+.+ ..|++.|. . .|.. +-+|.
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK----~--~pk~~yyfWs 149 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK----N--FPKRAYYFWS 149 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h--CCcccchHHH
Confidence 555566667777788888888888888888887 54444444444444444 34444444 2 3433 44676
Q ss_pred HHHHHHHH-HhCC------CChHHHHHHHHHHHHhC-CcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHH
Q 002477 590 TYLSKFVK-RYGK------TKLERARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (917)
Q Consensus 590 ~yl~~~~~-~~~~------~~~e~Ar~lfe~al~~~-p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~ 661 (917)
.. +.... ..+. -.+.-|...+++.++.. +-....++. .|-...+.+|.+++|..++..-+...-.+....
T Consensus 150 V~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~ 227 (932)
T KOG2053|consen 150 VI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLY 227 (932)
T ss_pred HH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence 53 22221 1111 12445677777777665 332234443 344555667888888888844433322222222
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCc
Q 002477 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 662 l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~ 694 (917)
+-+..+......+.+.+.-++-.+++.. .+++
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k-~~Dd 259 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLEK-GNDD 259 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHh-CCcc
Confidence 3233334445566666666677777766 4543
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0015 Score=59.79 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC---hHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH---VKDIWV 589 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~---~~~lw~ 589 (917)
.+++..+.++...|+.++|+..|++++...+.. ..+++.+|..+...|++++|..+++.++..| |+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHH
Confidence 456777888888999999999999999876555 3578899999999999999999999999864 44 444444
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 590 TYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 590 ~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
.+.-.+. ..|+.++|...+-.++.
T Consensus 80 f~Al~L~---~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALY---NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHH---HCCCHHHHHHHHHHHHH
Confidence 3332222 45778888888877764
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.60 E-value=0.00024 Score=59.16 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=53.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH
Q 002477 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD 586 (917)
Q Consensus 523 ~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~ 586 (917)
.++...++++.|..++++++.++|.++..|..+|.++...|++.+|...|+++++. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 45677889999999999999999999999999999999999999999999999986 676654
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.57 E-value=0.0012 Score=62.89 Aligned_cols=100 Identities=15% Similarity=0.083 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~ 503 (917)
.--+.+|.-+...|++++|..+|.-....+|.++ ..|..+|.++...+++++|+..|..+..+.+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----------- 102 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK----------- 102 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----------
Confidence 4456666667788999999999999888888888 8899999988888888888888888876533
Q ss_pred CchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 002477 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (917)
Q Consensus 504 ~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~ 548 (917)
+++...+..+.++...|+.+.|+..|+.+++ +|.+
T Consensus 103 ---------~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 103 ---------NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ---------CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 3455566677788888888888888888887 3443
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.55 E-value=0.00038 Score=57.92 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 002477 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (917)
Q Consensus 468 a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~ 547 (917)
..++.+++++++|+.++++++...| .++.+|..++.++...|+++.|...|+++++..|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p--------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP--------------------DDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc--------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999866 58899999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 002477 548 TPQIIINYAL 557 (917)
Q Consensus 548 ~~~~~~~~a~ 557 (917)
++.+....+.
T Consensus 62 ~~~~~~~~a~ 71 (73)
T PF13371_consen 62 DPDARALRAM 71 (73)
T ss_pred cHHHHHHHHh
Confidence 8887655543
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00031 Score=51.97 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~ 557 (917)
.+|..++.++...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456677777777777777777777777777777777776664
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.064 Score=54.87 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=74.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh--HHHHHHHHHHHHHHhC
Q 002477 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV--KDIWVTYLSKFVKRYG 600 (917)
Q Consensus 523 ~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~--~~lw~~yl~~~~~~~~ 600 (917)
-++..-|+++.|.....+.. +-.+...-..++.+...++-|.+..+++..+ +.+. ..+-..|+..+. |
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~la~---g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVKLAT---G 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHHHhc---c
Confidence 34555666666666655522 2233333334444555666666666666664 2111 112223332222 5
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHH
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM 662 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l 662 (917)
++++..|--+|+..-+.+|+ .+.+..-.+.+...+|++++|..+++.++...++++....
T Consensus 186 gek~qdAfyifeE~s~k~~~--T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPP--TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred chhhhhHHHHHHHHhcccCC--ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 56677777777777776666 4666666777777778888888888888877777655443
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.0042 Score=56.98 Aligned_cols=99 Identities=18% Similarity=0.063 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
.+++..|.++-..|+.++|+.+|++++..... -+.....+..++..+..+|++++|..++++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-----------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS-----------------GADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777788888888888888764210 0012457777888888888888888888888
Q ss_pred HhccCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 542 LDLRIA---TPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 542 l~~~p~---~~~~~~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
+...|. +..+...++..+...|+.++|+..+-.++.
T Consensus 65 ~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 65 LEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888777 667777788888888888888888777765
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00036 Score=51.60 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHH
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~ 469 (917)
.+|..+|..|...|++++|+.+|+++++.+|.++ .+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH----HHHHHhhh
Confidence 6899999999999999999999999999999999 99998875
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.30 E-value=0.0028 Score=60.48 Aligned_cols=98 Identities=7% Similarity=-0.109 Sum_probs=79.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 002477 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (917)
Q Consensus 466 ~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~ 545 (917)
.+|--...+|++++|..+|+-.+...+ .+.+.|..++-++...|++++|...|..+..+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~--------------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF--------------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345445678888888888888776644 367888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH
Q 002477 546 IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD 586 (917)
Q Consensus 546 p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~ 586 (917)
+++|...+..|.++...|+.+.|...|+.++. .|....
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~---~~~~~~ 139 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE---RTEDES 139 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh---CcchHH
Confidence 88888888888888888888888888888888 465433
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.1 Score=53.40 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=116.8
Q ss_pred cHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 422 PHTLW-VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 422 ~~~lw-~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
+..+| ..-|.+|...|++++|.....+.... ++...-..+.++...++-|.+.++++.......+
T Consensus 106 sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t----- 171 (299)
T KOG3081|consen 106 SNLIDLLLAAIIYMHDGDFDEALKALHLGENL---------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT----- 171 (299)
T ss_pred hhHHHHHHhhHHhhcCCChHHHHHHHhccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-----
Confidence 33344 44456788899999998887763322 3333344556777788999999999887754111
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
-..+-..|+.+-.--+.+..|--+|+.+-+..|-+|.+.+..|.+....|++++|..+++.++..
T Consensus 172 -------------LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-- 236 (299)
T KOG3081|consen 172 -------------LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-- 236 (299)
T ss_pred -------------HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 01122223333333456889999999999988889999999999999999999999999999994
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 581 ~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
+++.++.....+..... -+.+.+-..+...|.....|.
T Consensus 237 d~~dpetL~Nliv~a~~--~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALH--LGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred cCCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHhcCCc
Confidence 88887766655543331 334556667777777777777
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.22 E-value=0.15 Score=54.13 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhh--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhh
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL--ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l--~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~ 501 (917)
.....++..+...+.++++.+.|++|+++...+.|.+ ..+++.++.++.+..++++|.-...+|..+... ..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s------~~ 196 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS------YG 196 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh------cC
Confidence 4445577777888899999999999999765544332 268899999999999999999998888765220 00
Q ss_pred cCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 002477 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR------IATPQIIINYALLLEEHKYFEDAFRVYERG 575 (917)
Q Consensus 502 ~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~------p~~~~~~~~~a~~~~~~g~~e~A~~~~era 575 (917)
.++... ....-..+.++-.+...|..-.|.+..+.+.++- +-......-+|.+|...|+.+.|+.-||.+
T Consensus 197 l~d~~~----kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 197 LKDWSL----KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred cCchhH----HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 000000 0001222334445677899999999999988873 222345677999999999999999999999
Q ss_pred hhccCCCCh----HHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCc---C-CcHHHHHHHHHHHHHhCCHHHHHH
Q 002477 576 VKIFKYPHV----KDIWVTYLSKFVKRYGK--TKLERARELFENAVETAPA---D-AVKPLYLQYAKLEEDYGLAKRAMK 645 (917)
Q Consensus 576 l~~f~~P~~----~~lw~~yl~~~~~~~~~--~~~e~Ar~lfe~al~~~p~---~-~~~~l~~~~a~~e~~~g~~~~A~~ 645 (917)
......-.+ .++.......+...... +--=+|.+.-+++++.... + ....+...++.+|...|+-++-..
T Consensus 273 m~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 273 MGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRA 352 (518)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 886322111 11111111111111000 0113466666666654221 1 123467778888888888877777
Q ss_pred HHHHHHhh
Q 002477 646 VYDQATKA 653 (917)
Q Consensus 646 ~y~~al~~ 653 (917)
.+.++-+.
T Consensus 353 h~~ra~~~ 360 (518)
T KOG1941|consen 353 HVVRAHEC 360 (518)
T ss_pred HHHHHHHH
Confidence 77765444
No 203
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.21 E-value=0.00055 Score=71.24 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=85.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhC
Q 002477 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600 (917)
Q Consensus 521 ~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~ 600 (917)
-++-+.++|.+++|+.+|.+.+.+.|.+|..+.|.|..|.+.+.|..|..-++.++.+ +-.....+. .....|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYS---RR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYS---RRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHH---HHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999997 333233333 33334446
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHH
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKL 633 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~ 633 (917)
.|+.++|..-++.+|++.|. +.++--.++.+
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~--~~ELkK~~a~i 208 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPK--NIELKKSLARI 208 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcc--cHHHHHHHHHh
Confidence 67899999999999999998 55555555543
No 204
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.13 Score=53.09 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
++......+|.+|....++..|-..|++.-...|... ...+-+|....+.+-+..|+.+.......
T Consensus 42 ~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~----qYrlY~AQSLY~A~i~ADALrV~~~~~D~---------- 107 (459)
T KOG4340|consen 42 RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE----QYRLYQAQSLYKACIYADALRVAFLLLDN---------- 107 (459)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH----HHHHHHHHHHHHhcccHHHHHHHHHhcCC----------
Confidence 4555566777777777778888888877776666544 55566677667777777777776655432
Q ss_pred hcCCchhhhhhhccHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVD----LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~----l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral 576 (917)
..+...... +.-+.+++-.++.+.++.-. -++..+.++.|-++.+.|+++.|.+-|+.++
T Consensus 108 --------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 108 --------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred --------------HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHH
Confidence 222222222 23345677777766655331 1467788888888888888888888888888
Q ss_pred hccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHH----HHHHHhCCc
Q 002477 577 KIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF----ENAVETAPA 620 (917)
Q Consensus 577 ~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lf----e~al~~~p~ 620 (917)
..- .-+..-.++.-+.. +..+++..|.+.. ++.++..|.
T Consensus 172 qvs-GyqpllAYniALaH----y~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 172 QVS-GYQPLLAYNLALAH----YSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred hhc-CCCchhHHHHHHHH----HhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 752 22223334433322 2345566666544 444444553
No 205
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.08 E-value=0.015 Score=54.10 Aligned_cols=116 Identities=21% Similarity=0.379 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCC-cCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCCChH----HHHHHHHHHHHHhcC
Q 002477 605 ERARELFENAVETAP-ADAVKPLYLQYAKLEEDY----GLAKRAMKVYDQATKAVPNHEKL----GMYEIYIARAAEIFG 675 (917)
Q Consensus 605 e~Ar~lfe~al~~~p-~~~~~~l~~~~a~~e~~~----g~~~~A~~~y~~al~~~p~~~~~----~l~~~~i~~~~~~~~ 675 (917)
+..|..|++.|.... .++-..+|..|....++. |.-..-..+++++++...+++.. .+..+++..+ . -
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya-~--~ 78 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA-D--L 78 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH-T--T
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH-H--H
Confidence 445666666666544 222356666666665542 44556666777777766554332 2333333321 1 2
Q ss_pred cchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 002477 676 VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFAS 724 (917)
Q Consensus 676 ~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~ 724 (917)
...++.+|+.+...+. ....+.+|..||.++...|++.+|.++|..++
T Consensus 79 ~~~~~~if~~l~~~~I-G~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGI-GTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTT-STTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3378888888887633 33444788888888888899999999888875
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.08 E-value=0.002 Score=71.21 Aligned_cols=69 Identities=14% Similarity=-0.053 Sum_probs=65.1
Q ss_pred hhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI---IINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 510 ~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
..|+....|+.++..+...|++++|...|+++++++|+++.+ |+|+|.+|...|++++|+..|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357789999999999999999999999999999999999854 999999999999999999999999996
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.0078 Score=54.33 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCC
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~ 603 (917)
.....|+.+.|.+.|.+++.+.|..+.+|+|.|+.+.-.|+.++|+.-+++++++ ..|.....-..|...-..+...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL-ag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL-AGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHHHHhCc
Confidence 3456789999999999999999999999999999999999999999999999998 345544444444433222123456
Q ss_pred hHHHHHHHHHHHHhC
Q 002477 604 LERARELFENAVETA 618 (917)
Q Consensus 604 ~e~Ar~lfe~al~~~ 618 (917)
.+.||.-|+.+-+.-
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777888787776654
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.06 E-value=0.011 Score=55.28 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
..+..-|.-.++.|+++.|++.|+.....-|. -+-....-..++..+...|+++.|+..|++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-----------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF-----------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55566666677788888888888877654330 0113344445566667788888888888888
Q ss_pred HhccCCCHH
Q 002477 542 LDLRIATPQ 550 (917)
Q Consensus 542 l~~~p~~~~ 550 (917)
|+++|.+|.
T Consensus 74 irLhP~hp~ 82 (142)
T PF13512_consen 74 IRLHPTHPN 82 (142)
T ss_pred HHhCCCCCC
Confidence 888888775
No 209
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.05 E-value=0.99 Score=52.17 Aligned_cols=100 Identities=22% Similarity=0.297 Sum_probs=62.7
Q ss_pred cCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHH-----HHHHHHHHhCCCChHHHHHHHHH------
Q 002477 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT-----YLSKFVKRYGKTKLERARELFEN------ 613 (917)
Q Consensus 545 ~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~-----yl~~~~~~~~~~~~e~Ar~lfe~------ 613 (917)
+...+.+++.||.+++..|.+++|-+.|-.+|++..+ + -.|-. +-..++ | .+++++.|...|-+
T Consensus 991 k~k~~~vhlk~a~~ledegk~edaskhyveaiklnty--n-itwcqavpsrfd~e~i-r-~gnkpe~av~mfi~dndwa~ 1065 (1636)
T KOG3616|consen 991 KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY--N-ITWCQAVPSRFDAEFI-R-AGNKPEEAVEMFIHDNDWAA 1065 (1636)
T ss_pred hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccc--c-chhhhcccchhhHHHH-H-cCCChHHHHHHhhhcccHHH
Confidence 3457889999999999999999999999999997321 1 11211 111122 1 34578888888843
Q ss_pred ---HH-HhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002477 614 ---AV-ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (917)
Q Consensus 614 ---al-~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~a 650 (917)
.- ..||+. -+.++.--++--...|++-+|...+-||
T Consensus 1066 aervae~h~~~~-l~dv~tgqar~aiee~d~~kae~fllra 1105 (1636)
T KOG3616|consen 1066 AERVAEAHCEDL-LADVLTGQARGAIEEGDFLKAEGFLLRA 1105 (1636)
T ss_pred HHHHHHhhChhh-hHHHHhhhhhccccccchhhhhhheeec
Confidence 11 234442 2445554444444467777777666555
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.03 E-value=0.00062 Score=47.03 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHccCHHHHH
Q 002477 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAF 569 (917)
Q Consensus 537 ~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~ 569 (917)
+|+++|+++|+++.+|.++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 489999999999999999999999999999986
No 211
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.03 E-value=0.019 Score=53.33 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccC---CCHHHHHHHHHHHHHc----cCHHHHHHHHHHHhhccCC-------CChHHHHHHHHHHHHH
Q 002477 532 ESTRAVYERILDLRI---ATPQIIINYALLLEEH----KYFEDAFRVYERGVKIFKY-------PHVKDIWVTYLSKFVK 597 (917)
Q Consensus 532 ~~A~~~y~~al~~~p---~~~~~~~~~a~~~~~~----g~~e~A~~~~eral~~f~~-------P~~~~lw~~yl~~~~~ 597 (917)
+..+..|+..|.... +.-..|..|.....++ +.-..-..++++++..|.+ |....+|..|+.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~---- 77 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD---- 77 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----
Confidence 455677877777644 2346899999888765 4557778899999998743 223466776653
Q ss_pred HhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002477 598 RYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT 651 (917)
Q Consensus 598 ~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al 651 (917)
. ...++++|.......-......+|..+|.+++..|++.+|.+||+.|+
T Consensus 78 ---~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 ---L--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---T--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---H--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 1 348999999999876655589999999999999999999999999886
No 212
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.038 Score=55.27 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHhhc
Q 002477 529 GNLESTRAVYERILDLRIAT------PQIIINYALLLEEH-KYFEDAFRVYERGVKI 578 (917)
Q Consensus 529 g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~-g~~e~A~~~~eral~~ 578 (917)
+++++|..++++++++.-.- ...++.+|.+|+.. .++++|+..||.+-.-
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35666666666666543211 11233445544433 5555555555555553
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.0018 Score=54.58 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLR----IAT---PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~----p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
-..++..++.++...|++++|+..|++++++. +.+ ..++.++|.++...|++++|.+.|++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677778888888888888888888888762 122 345778888888888888888888888875
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.11 Score=52.88 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCC
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~-~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~ 504 (917)
-+.++.+....|.+.-....+.+.++.+ |..+ .+...++.+.++-|+.+.|...|++.-+.... .. .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p----~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k----L~----~ 247 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP----QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK----LD----G 247 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----hh----c
Confidence 3567777788889998999999998877 4455 77888999999999999999999976533210 00 0
Q ss_pred chhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC
Q 002477 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (917)
Q Consensus 505 ~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~ 583 (917)
......+....+-++.-.+++..|...|.+++..+|.+|.+.++-|.++.-.|+..+|++..+.++.. .|.
T Consensus 248 ------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~ 318 (366)
T KOG2796|consen 248 ------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPR 318 (366)
T ss_pred ------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCc
Confidence 00112233344455566778999999999999999999999999999999999999999999999997 554
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.018 Score=59.51 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCc
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~ 505 (917)
-+.-|.-+...|++..|...|..-++.-|+++ -....++.+++....+|+++.|..+|.++.+..|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 34445556677889999999999999877753 12255566899999999999999999999865441
Q ss_pred hhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHH
Q 002477 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (917)
Q Consensus 506 ~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~ 554 (917)
.++.+...+.++.+...+|+.+.|+..|+++++..|.++.+...
T Consensus 211 -----s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 211 -----SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred -----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45677888888888889999999999999999998988766544
No 216
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.23 Score=54.77 Aligned_cols=314 Identities=15% Similarity=0.156 Sum_probs=177.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCChhHHHhhhhcCCchhhh
Q 002477 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT-AEPSVEVRRRVAADGNEPVQM 509 (917)
Q Consensus 431 ~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al-~~~~~~~~~~~~~~~~~~~~~ 509 (917)
.+|....++..+..-..-+......++ .....-+.++.-+||+.+|.+++-+.- ..-+. |..+.
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~----~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g---------~~~T~-- 278 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSS----MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAG---------GTITP-- 278 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCc----HHHHHHHHHHHHhcchHHHHHHHHhcccccccC---------ccccc--
Confidence 344555555555544444444433444 566667888889999999998876532 21110 00000
Q ss_pred hhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------ccCC---------CHHHHHHHHHHHHHccCHHHHHHH
Q 002477 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILD---------LRIA---------TPQIIINYALLLEEHKYFEDAFRV 571 (917)
Q Consensus 510 ~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~---------~~p~---------~~~~~~~~a~~~~~~g~~e~A~~~ 571 (917)
--.+--+|+.++-+....|.+.-+..+|.+++. +.|. .-.+.+|.|..+...|++-.|++.
T Consensus 279 -q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 279 -QLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred -hhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 001234566666666777777777778887775 1222 124677888888888888888888
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHhCCC----------------------------------------------ChH
Q 002477 572 YERGVKIFKYPHVKDIWVTYLSKFVKRYGKT----------------------------------------------KLE 605 (917)
Q Consensus 572 ~eral~~f~~P~~~~lw~~yl~~~~~~~~~~----------------------------------------------~~e 605 (917)
|..++..| -.++.+|.......+.....+ .++
T Consensus 358 f~~av~vf--h~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~sle 435 (696)
T KOG2471|consen 358 FQKAVHVF--HRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLE 435 (696)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccH
Confidence 88888875 344567877654332211100 345
Q ss_pred HHHHHHHHHHHhCCcCC-------------------------------------------------------cHHHHHHH
Q 002477 606 RARELFENAVETAPADA-------------------------------------------------------VKPLYLQY 630 (917)
Q Consensus 606 ~Ar~lfe~al~~~p~~~-------------------------------------------------------~~~l~~~~ 630 (917)
-|+-.+..+|-..|.+. -..+|-..
T Consensus 436 fA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ 515 (696)
T KOG2471|consen 436 FARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANM 515 (696)
T ss_pred HHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHH
Confidence 55655655553322110 00156666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH---hcCcchHHH-------------------HHHH---
Q 002477 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE---IFGVPKTRE-------------------IYEQ--- 685 (917)
Q Consensus 631 a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~---~~~~~~ar~-------------------~ye~--- 685 (917)
+-++.+.|+.-.|+..-++.++. |+-.....+.+.+..+.. +....+|+. -|+.
T Consensus 516 ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~ 594 (696)
T KOG2471|consen 516 AYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWK 594 (696)
T ss_pred HHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhc
Confidence 67777889988888888887764 332333334433332221 122222222 1221
Q ss_pred ---HHHh---C-------CCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002477 686 ---AIES---G-------LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTF 752 (917)
Q Consensus 686 ---al~~---~-------~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a 752 (917)
+++. . .|+..-..+...+|..+.-.|+.|+|++++.+|..+.+...++..-..-.-++.+.|+...+
T Consensus 595 ~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~a 674 (696)
T KOG2471|consen 595 HTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDA 674 (696)
T ss_pred cccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcch
Confidence 1100 0 11111224677888888999999999999999988854323343333334456688998887
Q ss_pred HHHHHHHhHhhhc
Q 002477 753 REMLRIKRSVSAS 765 (917)
Q Consensus 753 ~~~lr~~r~~~~~ 765 (917)
...+ ||+.-.+
T Consensus 675 l~~l--k~~~~~~ 685 (696)
T KOG2471|consen 675 LARL--KQCTHVS 685 (696)
T ss_pred HHHH--Hhccccc
Confidence 7666 5554433
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.88 E-value=0.023 Score=53.10 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.-++.-+.-....|+++.|++.|+.+....|.. +++-+.++..+...++++.|+..+++-|++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333333444444455555555555555544432 344455555555555555555555555554
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.86 E-value=0.29 Score=52.11 Aligned_cols=175 Identities=18% Similarity=0.134 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc----H
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFK-YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV----K 624 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~-~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~----~ 624 (917)
.++.+++..++..-+|.+++.+-.-.+.+.. +|.... ....+.......+.+.++++.+.|+.|+.......+ .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~-gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG-GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc-chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 5788999999999999999998888877521 221100 011111112223556799999999999986433222 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC---------hHHHHHHHHHHHHHhcCcchHHHHHHHHHHhC--CCC
Q 002477 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE---------KLGMYEIYIARAAEIFGVPKTREIYEQAIESG--LPD 693 (917)
Q Consensus 625 ~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~---------~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~--~p~ 693 (917)
.++..++.+.-+..++++|.-...+|..++..-. .+.+|..-+.. ..+|.+..|.+..+++.+.. ..+
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal-R~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL-RLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHhCC
Confidence 5889999999999999999999988888764321 11233333332 45688899999999888761 112
Q ss_pred chH-HHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 694 KDV-KAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 694 ~~~-~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
... +.-..-+|++++..|+.++|..-|+.|...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 221 123456899999999999999999999866
No 219
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.017 Score=56.22 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=69.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHH-----HHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQ-----IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR 598 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~-----~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~ 598 (917)
-+...|++++|..-|..+|+..|.++. .|.|.|......+.++.|+.-+.++|.+ +|........... ++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAe-aye- 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAE-AYE- 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHH-HHH-
Confidence 345678999999999999999988763 5677888888888888888888888887 7776444433221 222
Q ss_pred hCCCChHHHHHHHHHHHHhCCc
Q 002477 599 YGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 599 ~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
...+++.|..-|.+.++..|.
T Consensus 180 -k~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 -KMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred -hhhhHHHHHHHHHHHHHhCcc
Confidence 335688888888888888887
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.85 E-value=0.013 Score=56.64 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHH
Q 002477 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (917)
Q Consensus 439 ~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 518 (917)
|+.|++.++.....+|.++ +.+..|+..++...++....
T Consensus 7 FE~ark~aea~y~~nP~Da----dnL~~WG~ALLELAqfk~g~------------------------------------- 45 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA----DNLTNWGGALLELAQFKQGP------------------------------------- 45 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHHS-HH-------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhH----HHHHHHHHHHHHHHhccCcc-------------------------------------
Confidence 5778889999888899888 77777876654432221100
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhhccCCCCh
Q 002477 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK-----------YFEDAFRVYERGVKIFKYPHV 584 (917)
Q Consensus 519 ~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g-----------~~e~A~~~~eral~~f~~P~~ 584 (917)
++...+++|+.-|+.+|.++|+...++.++|..+..++ .|++|...|++++.. +|.+
T Consensus 46 -------es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~n 113 (186)
T PF06552_consen 46 -------ESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNN 113 (186)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-
T ss_pred -------hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCc
Confidence 11123567788899999999999999999998887654 244444555555543 4544
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.015 Score=60.18 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=61.5
Q ss_pred HHHccCHHHHHHHHHHHhhccCCCChH-----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC-CcHHHHHHHHH
Q 002477 559 LEEHKYFEDAFRVYERGVKIFKYPHVK-----DIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD-AVKPLYLQYAK 632 (917)
Q Consensus 559 ~~~~g~~e~A~~~~eral~~f~~P~~~-----~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~-~~~~l~~~~a~ 632 (917)
+...|++..|...|...|.. +|++. ..|. +..+ +.+++++.|..+|..+++..|.. ..++.++.+|.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWL--Ge~~---y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWL--GESL---YAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHH--HHHH---HhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44556677777777777764 45432 2332 2222 35667777777777777776654 34677777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCCh
Q 002477 633 LEEDYGLAKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 633 ~e~~~g~~~~A~~~y~~al~~~p~~~~ 659 (917)
...+.|+.+.|..+|+..++..|..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 777777777777777777777777543
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.78 E-value=0.0029 Score=53.31 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=57.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVN---YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~---~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
...++..+|.+|...|++++|+..|++++.+. +......+.++..+|.++...|++++|++.+++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999762 2222345788999999999999999999999999864
No 223
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.75 E-value=0.68 Score=51.51 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCChhHHHhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA-EPSVEVRRRV 499 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~-~~~~~~~~~~ 499 (917)
.....|+.+++...+.|.++.|...+.++...++........+.+.++.+....|+..+|+..++..+. .....+....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 456889999999999999999999999999866433222338888999999999999999999999887 2221100000
Q ss_pred ---hhcC---------Cch-hhhhhhccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 002477 500 ---AADG---------NEP-VQMKLHKSLRLWTFYVDLEESL------GNLESTRAVYERILDLRIATPQIIINYALLLE 560 (917)
Q Consensus 500 ---~~~~---------~~~-~~~~~~~~~~~w~~~~~l~~~~------g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~ 560 (917)
...+ ... .........+++..++.+.... +..+.+...|..++..+|....+|..+|.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 000 1111223457778888887777 78899999999999999988889999998765
Q ss_pred H
Q 002477 561 E 561 (917)
Q Consensus 561 ~ 561 (917)
.
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 4
No 224
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.75 E-value=0.0024 Score=43.44 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHHh
Q 002477 83 EYETLNNTFERALVTMHKMPRIWIMYLETLT 113 (917)
Q Consensus 83 ~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~ 113 (917)
+++.++.+|++++..+|.++.+|+.|+.|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4577888888888888888888888888764
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.70 E-value=0.023 Score=63.08 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 420 ~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
+.....|+.+|..|...|++++|...|+++++.+|++. +-...|+..|..+...|++++|+..|++|+..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-eA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-EAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999876 00124999999999999999999999999986
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.018 Score=51.99 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=58.3
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH----HHHHHHHHHHHHhcC
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL----GMYEIYIARAAEIFG 675 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~----~l~~~~i~~~~~~~~ 675 (917)
..++++.|.+.|.|+|..+|. .+..|.+.++.+.-+|+.++|+.-+++|++...+..+. .+..+.+. ...|+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly--Rl~g~ 130 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY--RLLGN 130 (175)
T ss_pred hccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--HHhCc
Confidence 357788999999999999888 67888888888888888888888888888775542221 12222222 23455
Q ss_pred cchHHHHHHHHHHh
Q 002477 676 VPKTREIYEQAIES 689 (917)
Q Consensus 676 ~~~ar~~ye~al~~ 689 (917)
.+.||.-|+.+-+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 55555555555544
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.18 Score=51.35 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC--CCChHHHHHHHHH
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK--YPHVKDIWVTYLS 593 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~--~P~~~~lw~~yl~ 593 (917)
+-+.|+.++.-.|.+.-...+|.+.++.+ |..|.....++.+..+-|+.+.|...|++.-+.-. +.....+... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~-~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL-MN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH-hh
Confidence 33567777888889999999999999988 67899999999999999999999999996654310 1111111110 01
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 594 ~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
+.....+.+++..|-..|.+++..+|. ++..-.+-|-+..-.|+...|+++.+.+++..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~--~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR--NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC--chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 111223778999999999999999888 55555566666666899999999999999999984
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.73 Score=46.75 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHHcCChhHHHHHHHHHHccC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 706 LEKSLGEIDRARGIYVFASQFA---DPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 706 le~~~g~~~~Ar~i~~~a~~~~---~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
++.-..++..|..+|..+++.. .|. +......+..++ ..|+.+.+..|+.
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 3444568999999999998872 222 334444444443 3589999988883
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.51 E-value=0.24 Score=54.53 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHhhccCCCChHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDL----RIATPQIIINYALLLEE---HKYFEDAFRVYERGVKIFKYPHVKDIW 588 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~~a~~~~~---~g~~e~A~~~~eral~~f~~P~~~~lw 588 (917)
.+-..+.-.+....+++.-+++.+.+-.+ -+.++.+...||..+-+ .|+.++|..++..++.. ..+...+.+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 33334444456667778888887777666 45567777888888887 78888888888886654 234444544
Q ss_pred HHHHH----HHHHH--hCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCC
Q 002477 589 VTYLS----KFVKR--YGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639 (917)
Q Consensus 589 ~~yl~----~~~~~--~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~ 639 (917)
-..+. .+... -+...+++|...|.++.+..|+.. .=++++-++...|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y---~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY---SGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc---chHHHHHHHHHcCC
Confidence 33222 22221 012346777777777777765522 23444445544443
No 230
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.62 Score=47.73 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHH
Q 002477 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517 (917)
Q Consensus 438 ~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (917)
+|.++..+|...+..+-.+ .+|+++-..++..+| -+..+
T Consensus 41 ~fr~~m~YfRAI~~~~E~S---------------------~RAl~LT~d~i~lNp--------------------AnYTV 79 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKS---------------------PRALQLTEDAIRLNP--------------------ANYTV 79 (318)
T ss_pred hHHHHHHHHHHHHhccccC---------------------HHHHHHHHHHHHhCc--------------------ccchH
Confidence 5666677776666555444 477888888888866 37789
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002477 518 WTFYVDLEESLG-NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE-DAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (917)
Q Consensus 518 w~~~~~l~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e-~A~~~~eral~~f~~P~~~~lw~~yl~~~ 595 (917)
|...-.++..++ ++.+-...++.+++-+|.+-++|...-.+.+-.|++. .-+...+.++.. +..+..+|..- .-.
T Consensus 80 W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~--DaKNYHaWshR-qW~ 156 (318)
T KOG0530|consen 80 WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD--DAKNYHAWSHR-QWV 156 (318)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc--cccchhhhHHH-HHH
Confidence 988888777664 6788888999999999999999999988888888887 778888888885 77888888742 222
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHH--HHHHHHhC-----CHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 002477 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQY--AKLEEDYG-----LAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~--a~~e~~~g-----~~~~A~~~y~~al~~~p~~~~~~l~~~~i~ 668 (917)
+..+ +.++.-...-.+.|+..-.+ -.+|... ..... .| ..++-+......|..+|++...|-|..-+.
T Consensus 157 ~r~F--~~~~~EL~y~~~Lle~Di~N--NSAWN~Ryfvi~~~-~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 157 LRFF--KDYEDELAYADELLEEDIRN--NSAWNQRYFVITNT-KGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHH--hhHHHHHHHHHHHHHHhhhc--cchhheeeEEEEec-cCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 2222 33676666667776654331 1233321 11110 22 234556778888999999999998776655
Q ss_pred HH-HHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHH------HHHcCChh---HHHHHHHHHHccCCCCCCHHHHHH
Q 002477 669 RA-AEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAEL------EKSLGEID---RARGIYVFASQFADPRSDTEFWNR 738 (917)
Q Consensus 669 ~~-~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~l------e~~~g~~~---~Ar~i~~~a~~~~~P~~~~~~w~~ 738 (917)
.. ......++.....+..+.. .|... +.+.--+..+ ..+.+.-+ +|..+|+......||- ...+|..
T Consensus 232 ~~d~gl~s~s~vv~f~~~l~~~-~~~~s-P~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~Dpi-R~nyW~~ 308 (318)
T KOG0530|consen 232 ELDSGLSSDSKVVSFVENLYLQ-LPKRS-PFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPI-RKNYWRH 308 (318)
T ss_pred HhccCCcCCchHHHHHHHHhhc-cCCCC-hhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcH-HHHHHHH
Confidence 32 1112245566666655532 33332 1111112222 23445555 5666777665344775 6788876
Q ss_pred H
Q 002477 739 W 739 (917)
Q Consensus 739 ~ 739 (917)
.
T Consensus 309 ~ 309 (318)
T KOG0530|consen 309 K 309 (318)
T ss_pred H
Confidence 5
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.50 E-value=0.54 Score=48.41 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHH
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYL 628 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~ 628 (917)
+..|.+-|.-..+.|++++|.+.|+..... +|...-.=...+......+..++++.|+...++-+...|.+.+. -|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 455666666677777777777777777764 44332111111112222335567777777777777777765332 122
Q ss_pred HHHHHHHH----------hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHH
Q 002477 629 QYAKLEED----------YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698 (917)
Q Consensus 629 ~~a~~e~~----------~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~ 698 (917)
.|...+.. +.-...|..-|+..++..|++.-..--...+.. + .+....
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~-------------~---------~d~LA~ 168 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK-------------L---------NDALAG 168 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH-------------H---------HHHHHH
Confidence 23222221 222344555556666666654321110000000 0 001112
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 699 MCLKYAELEKSLGEIDRARGIYVFASQFADPRSD--TEFWNRWHEFEVNHGNEDTFREML 756 (917)
Q Consensus 699 ~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~--~~~w~~~~~fe~~~G~~~~a~~~l 756 (917)
.=+..|+++.+.|....|..-++..++. .|... .+..-.|.+.....|-.+.|...-
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 2345677888888888888888888887 55532 355666677777788877776655
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.91 Score=48.01 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=119.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CChhHHHhhhhcCCchhhhh
Q 002477 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMK 510 (917)
Q Consensus 432 ~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~-~~~~~~~~~~~~~~~~~~~~ 510 (917)
..+.+|++-+|...+++.|+-.|.+. -.|..--..+.-+|+...-+..+++.+-. ++.
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d----------------- 170 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD----------------- 170 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccCCC-----------------
Confidence 44567899999999999999888776 55555555666788888888888888744 220
Q ss_pred hhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC---hHHH
Q 002477 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH---VKDI 587 (917)
Q Consensus 511 ~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~---~~~l 587 (917)
+|-..-+.-+|+-.++..|-++.|.+.-++++++++.+.=+....+.+++-+|++.++.+.+++--...++.. +...
T Consensus 171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 2334566677888888999999999999999999998888888999999999999999998887655422111 1123
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 002477 588 WVTYLSKFVKRYGKTKLERARELFENAVET 617 (917)
Q Consensus 588 w~~yl~~~~~~~~~~~~e~Ar~lfe~al~~ 617 (917)
|..-+- .+ ..+.++.|.++|++-+-.
T Consensus 251 WH~Al~-~i---E~aeye~aleIyD~ei~k 276 (491)
T KOG2610|consen 251 WHTALF-HI---EGAEYEKALEIYDREIWK 276 (491)
T ss_pred HHHHHh-hh---cccchhHHHHHHHHHHHH
Confidence 443221 12 347899999999987754
No 233
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.032 Score=54.33 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=75.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHhhccCCCChH-HHH-HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHH
Q 002477 555 YALLLEEHKYFEDAFRVYERGVKIFKYPHVK-DIW-VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (917)
Q Consensus 555 ~a~~~~~~g~~e~A~~~~eral~~f~~P~~~-~lw-~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~ 632 (917)
-|.-+..+|.+++|..-|.+|+.+ +|... ... ..|......+.+.++.+.|..-..++|++.|. ........|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHH
Confidence 355566789999999999999997 56542 211 12333333334667889999999999999998 6677778888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 633 LEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 633 ~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
++++...++.|+.-|.+.+...|..
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcch
Confidence 8988899999999999999998873
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.35 Score=53.23 Aligned_cols=178 Identities=14% Similarity=0.090 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc--CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcH
Q 002477 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIF--KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVK 624 (917)
Q Consensus 547 ~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f--~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~ 624 (917)
-++.+.+++-..|....+++.-+++.+..-.+. +.+....+-..|+-.+..|...|+.++|++++..++...... ++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~ 217 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DP 217 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-Ch
Confidence 356788888888999999999999999887761 123344555556555555666889999999999977665443 67
Q ss_pred HHHHHHHHHHHH---------hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHh--cCcchHHHHH----HHHHHh
Q 002477 625 PLYLQYAKLEED---------YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI--FGVPKTREIY----EQAIES 689 (917)
Q Consensus 625 ~l~~~~a~~e~~---------~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~--~~~~~ar~~y----e~al~~ 689 (917)
+++-.+|..+.. ....++|+..|.+|.+..|+.-.-.-+ ..+...... ..-.+.+++- ....+.
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~-AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINA-ATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHH-HHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 889988888764 224688999999999998763221111 111111110 1112233333 111122
Q ss_pred CCCCchHHHHHH--HHHHHHHHcCChhHHHHHHHHHHccC
Q 002477 690 GLPDKDVKAMCL--KYAELEKSLGEIDRARGIYVFASQFA 727 (917)
Q Consensus 690 ~~p~~~~~~~~l--~~a~le~~~g~~~~Ar~i~~~a~~~~ 727 (917)
+.-+. ...+|. .++.+..-.|+.++|...++++....
T Consensus 297 g~~~~-~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 297 GSLEK-MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccc-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 11111 124454 34555566789999999999988873
No 235
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.33 E-value=0.017 Score=60.46 Aligned_cols=230 Identities=14% Similarity=0.065 Sum_probs=121.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhh
Q 002477 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (917)
Q Consensus 429 ~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 508 (917)
-|.-|.++|.|++|+..|.+++.+.|.++ ..+...|..|++.+.+..|..--..|+.+..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---------------- 162 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNP----VYHINRALAYLKQKSFAQAEEDCEAAIALDK---------------- 162 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCc----cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH----------------
Confidence 35566777777777777777777777776 6666666666666666666665555555533
Q ss_pred hhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHH
Q 002477 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588 (917)
Q Consensus 509 ~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw 588 (917)
...+.|...+..-..+|...+|.+-|++++.+.|.+-.+--.++.+-. ..|+-|..
T Consensus 163 ----~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----------l~E~~I~~---------- 218 (536)
T KOG4648|consen 163 ----LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----------LRERKIAT---------- 218 (536)
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----------hHhhhHHh----------
Confidence 123445555555555666666666666666666655443333332211 00000000
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 002477 589 VTYLSKFVKRYGKTKLERARELFENAVET-APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (917)
Q Consensus 589 ~~yl~~~~~~~~~~~~e~Ar~lfe~al~~-~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i 667 (917)
....| +-.|+.--.|+|.. .|. ......|.++.++..|-+.+.....+..+.+-..-
T Consensus 219 ---------KsT~G-~~~A~Q~~~Q~l~~K~~G-----------~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~- 276 (536)
T KOG4648|consen 219 ---------KSTPG-FTPARQGMIQILPIKKPG-----------YKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDED- 276 (536)
T ss_pred ---------hcCCC-CCccccchhhhccccCcc-----------hhhhhhhccccceeEeeccccccCccccCcccHHH-
Confidence 00001 22334333444421 222 22234577778888888877766655443322111
Q ss_pred HHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 668 ~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
+.+.++++.+..-.-+++-. .|... .....-+..+.-+|...+|..-++.++.. .|.
T Consensus 277 --~~KI~~~~~~~~~~~~~~~~-~~s~~--~~~s~~~~A~T~~~~~~E~K~~~~T~~~~-~P~ 333 (536)
T KOG4648|consen 277 --IDKIFNSNCGIIEEVKKTNP-KPTPM--PDTSGPPKAETIAKTSKEVKPTKQTAVKV-APA 333 (536)
T ss_pred --HHHHhhcchhHHHHHHhcCC-CCCcC--cccCCCchhHHHHhhhhhcCcchhheeee-ccc
Confidence 13445666666655555543 22221 12223333445556677777777777766 554
No 236
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.30 E-value=0.056 Score=49.68 Aligned_cols=109 Identities=27% Similarity=0.441 Sum_probs=79.5
Q ss_pred HHHHHHHHHH-hc-cCCCH-HHHHHHHHHHHHc----cCHHHHHHHHHHHhhccC-------CCChHHHHHHHHHHHHHH
Q 002477 533 STRAVYERIL-DL-RIATP-QIIINYALLLEEH----KYFEDAFRVYERGVKIFK-------YPHVKDIWVTYLSKFVKR 598 (917)
Q Consensus 533 ~A~~~y~~al-~~-~p~~~-~~~~~~a~~~~~~----g~~e~A~~~~eral~~f~-------~P~~~~lw~~yl~~~~~~ 598 (917)
..+..|+..| .. ..++| ++|..|..+.+.+ +.-..-..+++|+++.|. +|....+|..|+..
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~---- 78 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN---- 78 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh----
Confidence 3456677666 32 22344 6898888887753 234556788899998863 45556888888753
Q ss_pred hCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002477 599 YGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (917)
Q Consensus 599 ~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~a 650 (917)
.+..+++|.......-......+|..+|.+++..|++.+|.+||+.+
T Consensus 79 -----~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 79 -----CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred -----cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 23478899998887666557889999999999999999999999853
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.25 E-value=1.7 Score=46.68 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=96.4
Q ss_pred HHhcCCHHHHHHHHHHHHhc----cCCChhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCChhHHHhhhhcCCchh
Q 002477 433 YETYKDIANARVIFDKAVQV----NYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (917)
Q Consensus 433 ~~~~g~~~~A~~i~e~al~~----~~~~~~~l~~~w~~~a~~e~~~~-~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~ 507 (917)
.++.|+++.|...|.|+-.. +|.....++.+.+..|.-....+ +++.|..+++++...-... .......+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----~~~~~~~~- 77 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----GKMDKLSP- 77 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----hhccccCC-
Confidence 46789999999999997543 45555667888889998888899 9999999999998662100 00000000
Q ss_pred hhhhhccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 508 QMKLHKSLRLWTFYVDLEESLGNL---ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 508 ~~~~~~~~~~w~~~~~l~~~~g~~---~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
....-...+...++..+...+.. ++|..+.+-+-...|+.|.++.-.-.++...++.+.+..++.++|..+.
T Consensus 78 -~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 78 -DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred -cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 00011235556677777666654 4566666666666787777776666666668888888888888888643
No 238
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.24 E-value=0.041 Score=50.54 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=70.3
Q ss_pred HHHHHHHH-H--HCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhc---------CCChHHHHHHHHHHh
Q 002477 46 FVIYERAL-K--ALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM---------HKMPRIWIMYLETLT 113 (917)
Q Consensus 46 ~~~yeral-~--~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~---------p~~~~lw~~y~~~~~ 113 (917)
...||..+ . ...+-..+|..|+.|....-. ..+.-.....+++||+..+ |...++|+.|+.+.
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p----~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~- 79 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYP----QGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC- 79 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCC----CCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-
Confidence 44567777 2 223346889999999753221 1123345778888888775 34457899999875
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHH
Q 002477 114 SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (917)
Q Consensus 114 ~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r 164 (917)
...+.+|.......=.+++...|..++.++...|.. ..|..+|++
T Consensus 80 -----~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~-~~A~~iy~~ 124 (125)
T smart00777 80 -----DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRY-KKADEVYQL 124 (125)
T ss_pred -----CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCH-HHHHHHHHc
Confidence 234666766655444456777777778777777776 777777764
No 239
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.23 E-value=0.0059 Score=40.68 Aligned_cols=30 Identities=37% Similarity=0.661 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 002477 712 EIDRARGIYVFASQFADPRSDTEFWNRWHEFEV 744 (917)
Q Consensus 712 ~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~ 744 (917)
++++||.||++.+.. +| ++..|..|..||-
T Consensus 2 E~dRAR~IyeR~v~~-hp--~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLV-HP--EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHh-CC--CchHHHHHHHhhc
Confidence 689999999999876 77 5789999999974
No 240
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=8 Score=51.46 Aligned_cols=292 Identities=14% Similarity=0.185 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHHhcc--CCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhh
Q 002477 385 VEQWHRRVKIFEGNP--TKQILTYTEAVRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL 460 (917)
Q Consensus 385 ~~~w~~~~~l~~~~~--~~a~~~y~~Ai~~i--~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l 460 (917)
.+.|..|.+.-...+ .+-+-.+.+++... +| .........|..+|++....|.++.|....-.|.+..+ +
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~-~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~--- 1702 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRS-NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--P--- 1702 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccc-cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--c---
Confidence 367888877765433 33444455555443 32 11235679999999999999999999999988887663 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchh--hhhhhccHHHHHHHHHHHHHcCCH--HHHHH
Q 002477 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV--QMKLHKSLRLWTFYVDLEESLGNL--ESTRA 536 (917)
Q Consensus 461 ~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~l~~~~g~~--~~A~~ 536 (917)
.+....|.+....|+-..|+.+++..+...-.. ....-...|. -..+++ ++-..++.+.+..|++ +...+
T Consensus 1703 -~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~---~~~~~~~~p~~~n~~i~~--~~~L~~~~~~~es~n~~s~~ilk 1776 (2382)
T KOG0890|consen 1703 -EIVLERAKLLWQTGDELNALSVLQEILSKNFPD---LHTPYTDTPQSVNLLIFK--KAKLKITKYLEESGNFESKDILK 1776 (2382)
T ss_pred -hHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc---ccCCccccchhhhhhhhh--hHHHHHHHHHHHhcchhHHHHHH
Confidence 889999999999999999999999998542100 0000001111 111222 3444555555655554 56788
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHH------------HccCHHH---HHHHHHHHhhcc------CCCChHHHHHHHHHHH
Q 002477 537 VYERILDLRIATPQIIINYALLLE------------EHKYFED---AFRVYERGVKIF------KYPHVKDIWVTYLSKF 595 (917)
Q Consensus 537 ~y~~al~~~p~~~~~~~~~a~~~~------------~~g~~e~---A~~~~eral~~f------~~P~~~~lw~~yl~~~ 595 (917)
.|..+.+..|.....++.+|.+|. .+|.+.. +.-.|.+++.-- .-|....+|.-|.+..
T Consensus 1777 ~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~ 1856 (2382)
T KOG0890|consen 1777 YYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHI 1856 (2382)
T ss_pred HHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchh
Confidence 999999999866555555443332 3345555 444445666531 0255567787765443
Q ss_pred HH--HhC-----CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHh----hCCCCChHHHH
Q 002477 596 VK--RYG-----KTKLERARELFENAVETAPADAVKPLYLQYAKLEED-YGLAKRAMKVYDQATK----AVPNHEKLGMY 663 (917)
Q Consensus 596 ~~--~~~-----~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~-~g~~~~A~~~y~~al~----~~p~~~~~~l~ 663 (917)
.. ..+ .++.+..-...+.++..+|+ ..+|..|.++..+ +...++...+....+. ..|. ..+|+-
T Consensus 1857 ~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~---Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPq-q~lW~~ 1932 (2382)
T KOG0890|consen 1857 SSVEKAPRGEIVSKNLKLINSLIEEALEHLPT---YQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQ-QTLWQS 1932 (2382)
T ss_pred cccccCChhhhhhhhHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCch-HHHHHH
Confidence 32 011 11345556667778888998 6788889999888 4555555555555554 4454 234433
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhCCCCc
Q 002477 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 664 ~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~ 694 (917)
...+. ........++..|.++++.. .++.
T Consensus 1933 ~a~~k-S~~p~R~~R~keIL~k~~~~-~~~~ 1961 (2382)
T KOG0890|consen 1933 AALSK-SNVPSRVERCKEILTKSRRQ-KPDY 1961 (2382)
T ss_pred HHHHh-cccHHHHHHHHHHHHHHHhc-CccH
Confidence 32222 11223345555666666655 4543
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.13 E-value=0.36 Score=54.02 Aligned_cols=149 Identities=14% Similarity=0.088 Sum_probs=97.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhh--hhcCCc-hh
Q 002477 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV--AADGNE-PV 507 (917)
Q Consensus 431 ~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~--~~~~~~-~~ 507 (917)
.-.++..+...-.+.-.+||+++|... ..|+.+|+= ......+|..+|+++++.....+.+.. .+.|.. ..
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCA----dAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCA----DAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhh----HHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 344566677777777788999998877 888777743 344688999999999876432221111 111110 00
Q ss_pred hhhhhcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC
Q 002477 508 QMKLHKS--LRLWTFYVDLEESLGNLESTRAVYERILDLRIA--TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (917)
Q Consensus 508 ~~~~~~~--~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~ 583 (917)
..+-... ..+-..++.+..+.|..++|++.|..+++..|. +-.+..++...+.+.+.+.++..++.+-=.+ .-|.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpk 328 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPK 328 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCc
Confidence 0000001 122234667778899999999999999988775 3457889999999999999999998886433 2355
Q ss_pred hHH
Q 002477 584 VKD 586 (917)
Q Consensus 584 ~~~ 586 (917)
+..
T Consensus 329 SAt 331 (539)
T PF04184_consen 329 SAT 331 (539)
T ss_pred hHH
Confidence 543
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.13 E-value=2.3 Score=45.64 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=134.5
Q ss_pred HHcCCHHHHHHHHHHHHhcc-CCCHH-------HHHHHHHHHHHcc-CHHHHHHHHHHHhhccCC--------CChHHHH
Q 002477 526 ESLGNLESTRAVYERILDLR-IATPQ-------IIINYALLLEEHK-YFEDAFRVYERGVKIFKY--------PHVKDIW 588 (917)
Q Consensus 526 ~~~g~~~~A~~~y~~al~~~-p~~~~-------~~~~~a~~~~~~g-~~e~A~~~~eral~~f~~--------P~~~~lw 588 (917)
...|+++.|..+|.|+-... ..+|. ++++.|.-....+ +++.|...++++..++.. |+..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35799999999999998876 44443 5677888888888 999999999999987422 2222222
Q ss_pred HHHHHHHHH-HhCC---CChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CCChHHHH
Q 002477 589 VTYLSKFVK-RYGK---TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP-NHEKLGMY 663 (917)
Q Consensus 589 ~~yl~~~~~-~~~~---~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p-~~~~~~l~ 663 (917)
..-+..+.. .... ...++|..+.+.+-...|+ .+.++....++..+.++.+.+.+++.+++...+ .+..+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 211111111 1122 2356777788778777887 567777777777778999999999999999887 44455544
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHh-CCCCch-HHHH-HHHHHHHHHHcCC------hhHHHHHHHHHHccC-CCCC--
Q 002477 664 EIYIARAAEIFGVPKTREIYEQAIES-GLPDKD-VKAM-CLKYAELEKSLGE------IDRARGIYVFASQFA-DPRS-- 731 (917)
Q Consensus 664 ~~~i~~~~~~~~~~~ar~~ye~al~~-~~p~~~-~~~~-~l~~a~le~~~g~------~~~Ar~i~~~a~~~~-~P~~-- 731 (917)
...+..... .....+...+...|.. -.|..+ .... .+....+....++ ++....+++...+.. .|-.
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444433233 3344555655555543 123332 1111 1122222222211 333434444322221 2211
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 732 -----DTEFWNRWHEFEVNHGNEDTFREMLRI 758 (917)
Q Consensus 732 -----~~~~w~~~~~fe~~~G~~~~a~~~lr~ 758 (917)
..-+|+.- .-..+.+++++|.+.+++
T Consensus 241 ~~~a~~~LLW~~~-~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 241 AASAIHTLLWNKG-KKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHH-HHHHhhcCHHHHHHHHHH
Confidence 13667763 334567899999988863
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.13 E-value=0.27 Score=54.89 Aligned_cols=178 Identities=18% Similarity=0.211 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHH-HHHHHhCCCChHHHHH
Q 002477 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS-KFVKRYGKTKLERARE 609 (917)
Q Consensus 531 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~-~~~~~~~~~~~e~Ar~ 609 (917)
...-+++=.+|++++|+++.+|+-+|. +......+|..+|++|++. .... |.. .+.. ..+.
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkA--gE~~------lg~s~~~~--~~g~------ 245 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKA--GEAS------LGKSQFLQ--HHGH------ 245 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHH--HHHh------hchhhhhh--cccc------
Confidence 444556667889999999999988874 4456678899999999885 1111 110 0110 0010
Q ss_pred HHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh
Q 002477 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~ 689 (917)
+-..+..-+.....-+-..+|.+..+.|..++|++.|+..++.+|....+.+....+......+.+.++..+..+-=..
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1011111111111334456788888999999999999999999998777777778888778888998888888774333
Q ss_pred CCCCchHHHHHHHHHHHHHH-cCC---------------hhHHHHHHHHHHccCCCC
Q 002477 690 GLPDKDVKAMCLKYAELEKS-LGE---------------IDRARGIYVFASQFADPR 730 (917)
Q Consensus 690 ~~p~~~~~~~~l~~a~le~~-~g~---------------~~~Ar~i~~~a~~~~~P~ 730 (917)
.+|.+. .+|..-|-+..+ .|+ ...|.+...+|++. +|.
T Consensus 325 ~lpkSA--ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef-NPH 378 (539)
T PF04184_consen 325 SLPKSA--TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF-NPH 378 (539)
T ss_pred cCCchH--HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh-CCC
Confidence 345544 333332322211 222 23467788888888 776
No 244
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.11 E-value=0.07 Score=51.67 Aligned_cols=92 Identities=20% Similarity=0.088 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCC--CCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccc--
Q 002477 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLP--ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF-- 117 (917)
Q Consensus 42 ~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~--~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~-- 117 (917)
|+.++..||.....+|.+.+.+.++..-..+...-.. -...-++.|..-|+.||.++|+.++.....+..++.++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5677888999999999999999888776544322111 122458999999999999999999888788887776553
Q ss_pred ---------HHHHHHHHHHHHHhCC
Q 002477 118 ---------ITKARRTFDRALCALP 133 (917)
Q Consensus 118 ---------~~~ar~~~~rAL~~~P 133 (917)
+++|...|++|+...|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555666666666
No 245
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=95.98 E-value=0.0086 Score=39.90 Aligned_cols=30 Identities=37% Similarity=0.672 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHH
Q 002477 603 KLERARELFENAVETAPADAVKPLYLQYAKLEE 635 (917)
Q Consensus 603 ~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~ 635 (917)
.+++||.+|++.+...|. +..|+.||.||+
T Consensus 2 E~dRAR~IyeR~v~~hp~---~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE---VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC---chHHHHHHHhhc
Confidence 478999999999998876 788999999986
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.86 E-value=0.009 Score=41.22 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=29.3
Q ss_pred HHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHH
Q 002477 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~ 644 (917)
.|++||+..|+ +...|.++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 37899999999 7899999999999999998886
No 247
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.73 E-value=0.021 Score=38.63 Aligned_cols=30 Identities=37% Similarity=0.590 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 002477 41 PFKKRFVIYERALKALPGSYKLWHAYLIER 70 (917)
Q Consensus 41 ~~~~~~~~yeral~~~P~s~~lW~~yl~~~ 70 (917)
..+.+..+|+++++.+|.+..+|..|+.+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 356778899999999999999999999886
No 248
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=2.3 Score=43.73 Aligned_cols=151 Identities=14% Similarity=0.215 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHH
Q 002477 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK-GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR 516 (917)
Q Consensus 438 ~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~-~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (917)
++.+-...++....-+|++- .+|..--.+....|++. .-+...+.++.... ++..
T Consensus 93 dL~~El~~l~eI~e~npKNY----QvWHHRr~ive~l~d~s~rELef~~~~l~~Da--------------------KNYH 148 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNY----QVWHHRRVIVELLGDPSFRELEFTKLMLDDDA--------------------KNYH 148 (318)
T ss_pred HHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHhcCcccchHHHHHHHHhccc--------------------cchh
Confidence 44555566666666677776 77766555555555555 55555566665433 4667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-cc-----CHHHHHHHHHHHhhccCCCChHHHHHH
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE-HK-----YFEDAFRVYERGVKIFKYPHVKDIWVT 590 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~-~g-----~~e~A~~~~eral~~f~~P~~~~lw~~ 590 (917)
+|...--+....+.++.-...-.++++.+.-+-.+|...--+... .| ..+.-++.....|.+ .|++...|+
T Consensus 149 aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~--vP~NeSaWn- 225 (318)
T KOG0530|consen 149 AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL--VPNNESAWN- 225 (318)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh--CCCCccHHH-
Confidence 777777777777777777777777777766555555431100000 11 123334444555554 677777888
Q ss_pred HHHHHHHH-hCCCChHHHHHHHHHHH
Q 002477 591 YLSKFVKR-YGKTKLERARELFENAV 615 (917)
Q Consensus 591 yl~~~~~~-~~~~~~e~Ar~lfe~al 615 (917)
|+..+... .|........+..+..+
T Consensus 226 YL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 226 YLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHHHHhccCCcCCchHHHHHHHHh
Confidence 55545432 22223344444444443
No 249
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.076 Score=53.37 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHH
Q 002477 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 474 ~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
.+.+..|+..|.+++..+| .....|...+.++.+..+++.+..-..+++++.|+.....+
T Consensus 23 ~k~y~~ai~~y~raI~~nP--------------------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINP--------------------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred hhhhchHHHHHHHHHhcCC--------------------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 3468899999999998877 35688999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHhhccC---CCChHHHHHHHH
Q 002477 554 NYALLLEEHKYFEDAFRVYERGVKIFK---YPHVKDIWVTYL 592 (917)
Q Consensus 554 ~~a~~~~~~g~~e~A~~~~eral~~f~---~P~~~~lw~~yl 592 (917)
.++........++.|+.++.++..+.+ .|.-.++|..+.
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~ 124 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALR 124 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 999999999999999999999977632 233357887654
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.65 E-value=0.024 Score=38.83 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~ 456 (917)
..|..+|.++...|++++|+..|+++++.+|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578899999999999999999999999988864
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.45 E-value=0.89 Score=43.36 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.+...++..+...|+++.|...+++++..+|.+..+|..+...+...|+...|.++|++....
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 455566777788899999999999999999999999999999999999999999999998774
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.44 E-value=3.8 Score=45.44 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCC-------
Q 002477 623 VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE--KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD------- 693 (917)
Q Consensus 623 ~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~--~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~------- 693 (917)
....|+.++++..+.|.++.|...+.++....+... ...+...+.......|+...|....+..++.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 456777788887778888888877777776553221 12223333333455666677777766666610110
Q ss_pred ------------------------chHHHHHHHHHHHHHHc------CChhHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 002477 694 ------------------------KDVKAMCLKYAELEKSL------GEIDRARGIYVFASQFADPRSDTEFWNRWHEFE 743 (917)
Q Consensus 694 ------------------------~~~~~~~l~~a~le~~~------g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe 743 (917)
.....+++.+|.+.... +..+.+...|..|++. +|. ....|..|..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~-~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPS-WEKAWHSWALFN 302 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-Chh-HHHHHHHHHHHH
Confidence 11235677788877777 8899999999999998 776 667999998886
Q ss_pred HHc
Q 002477 744 VNH 746 (917)
Q Consensus 744 ~~~ 746 (917)
...
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 553
No 253
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.43 E-value=0.38 Score=52.07 Aligned_cols=276 Identities=11% Similarity=0.010 Sum_probs=144.3
Q ss_pred CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CCChhhhHHHHHHHHHHHHhc
Q 002477 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMELRH 474 (917)
Q Consensus 397 ~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~--~~~~~~l~~~w~~~a~~e~~~ 474 (917)
++....+..|+.||+.- . ......+.+|..++..|.-.+++++|.++-..-+.+. -.+--.-+..--.+++...-.
T Consensus 31 gdcraGv~ff~aA~qvG-T-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVG-T-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhc-c-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 56677888899988531 1 0112245678888888888888777776543222110 000000012222345555667
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHH
Q 002477 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN-------------LESTRAVYERI 541 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~-------------~~~A~~~y~~a 541 (917)
|.+++|+-.-.|-+.... .+..++ .....++.++++|...|. .+++...++.+
T Consensus 109 G~fdeA~~cc~rhLd~ar-eLgDrv-------------~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFAR-ELGDRV-------------LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred cccchHHHHHHHHhHHHH-HHhHHH-------------hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 788888877666554311 000010 023444555555544331 13444444444
Q ss_pred HhccCCC-------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHhCCCChHHH
Q 002477 542 LDLRIAT-------------PQIIINYALLLEEHKYFEDAFRVYERGVKIFK-YPHVKDIWVTYLSKFVKRYGKTKLERA 607 (917)
Q Consensus 542 l~~~p~~-------------~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~-~P~~~~lw~~yl~~~~~~~~~~~~e~A 607 (917)
++..-.+ -.++-+++..|.-.|+|+.|+..-+.-+.+-+ +-+.......+...--.+.-.++++-|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 4332111 13566777888888999999887766665411 011111111110000000013578999
Q ss_pred HHHHHHHHHh----CCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CCh---H-HHHHHHHHHHHHhcCcch
Q 002477 608 RELFENAVET----APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN-HEK---L-GMYEIYIARAAEIFGVPK 678 (917)
Q Consensus 608 r~lfe~al~~----~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~-~~~---~-~l~~~~i~~~~~~~~~~~ 678 (917)
.+.|.+.+.+ -.........+.+|..+.-...+.+|+.++.|-+.+... ++. . ..|..-. ....+|+..+
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgn-a~~alg~h~k 333 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGN-AFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHhhhhHHH
Confidence 9999887654 222112445667778888888899999999887765322 111 1 1222222 2245677777
Q ss_pred HHHHHHHHHHh
Q 002477 679 TREIYEQAIES 689 (917)
Q Consensus 679 ar~~ye~al~~ 689 (917)
|....+..++.
T Consensus 334 Al~fae~hl~~ 344 (639)
T KOG1130|consen 334 ALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 254
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.097 Score=52.66 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=74.0
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCH
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~ 477 (917)
.+..|+..|.+|| .++| .....|.+-|.++.+.++++.+..-..++++..|+.+ .....++...+...++
T Consensus 25 ~y~~ai~~y~raI-~~nP-----~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v----k~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 25 RYDDAIDCYSRAI-CINP-----TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV----KAHYFLGQWLLQSKGY 94 (284)
T ss_pred hhchHHHHHHHHH-hcCC-----CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH----HHHHHHHHHHHhhccc
Confidence 4567889999999 5677 5668899999999999999999999999999999988 8888899999999999
Q ss_pred HHHHHHHHHHHcC
Q 002477 478 KGALELMRRATAE 490 (917)
Q Consensus 478 ~~A~~~l~~al~~ 490 (917)
+.|+..+++|.+.
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999643
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=2.5 Score=43.04 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH-HHHHHHHH--
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK-DIWVTYLS-- 593 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~-~lw~~yl~-- 593 (917)
++..-..+|...|+.+.|-..++++-+ ..++.++++|+++|+|++.++...+.. ..+-.|..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 333334455667777777777776655 345677899999999999886433321 11221211
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH------hCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002477 594 KFVKRYGKTKLERARELFENAVE------TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (917)
Q Consensus 594 ~~~~~~~~~~~e~Ar~lfe~al~------~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~ 652 (917)
.... ...++++|-..|.+-.. ..|. .-..++....++.-..++..|..+|+...+
T Consensus 158 r~lV--rl~kf~Eaa~a~lKe~~~~~~~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 158 RVLV--RLEKFTEAATAFLKEGVAADKCDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hHhh--hhHHhhHHHHHHHHhhhHHHHHhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 1111 23445555555544321 1222 233444444444445566666666665544
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.23 E-value=0.03 Score=38.46 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
.+|+..|..|...|+++.|...|+++++.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999998885
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.22 E-value=0.048 Score=37.26 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 625 ~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
.+|..+|.++...|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999998874
No 258
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.21 E-value=0.95 Score=50.34 Aligned_cols=165 Identities=14% Similarity=0.119 Sum_probs=104.8
Q ss_pred HhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHH-Hhh----h-hcCCchhhhhhhccHHHH---HH
Q 002477 450 VQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVR-RRV----A-ADGNEPVQMKLHKSLRLW---TF 520 (917)
Q Consensus 450 l~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~-~~~----~-~~~~~~~~~~~~~~~~~w---~~ 520 (917)
+..+|-++ +..+..+++..++|+...|..+++||+-.-..... .+. . ..|....--..+.+-.+| ..
T Consensus 33 l~~~PyHi----dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 33 LQKNPYHI----DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 56678888 88888999999999999999999988743211110 110 0 111111111123344444 45
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC-CHHHHHHHHHHH-HHccCHHHHHHHHHHHhhc------cCCCChHHHHHHHH
Q 002477 521 YVDLEESLGNLESTRAVYERILDLRIA-TPQIIINYALLL-EEHKYFEDAFRVYERGVKI------FKYPHVKDIWVTYL 592 (917)
Q Consensus 521 ~~~l~~~~g~~~~A~~~y~~al~~~p~-~~~~~~~~a~~~-~~~g~~e~A~~~~eral~~------f~~P~~~~lw~~yl 592 (917)
|+....+.|.+..|.++.+=++.++|. +|-....+..++ .+.++++--+..++..... -.-|+. .+..-+
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~--a~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF--AFSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH--HHHHHH
Confidence 677788899999999999999999998 898777777666 4667777777777765541 012332 122222
Q ss_pred HHHHHHh-----------CCCChHHHHHHHHHHHHhCCc
Q 002477 593 SKFVKRY-----------GKTKLERARELFENAVETAPA 620 (917)
Q Consensus 593 ~~~~~~~-----------~~~~~e~Ar~lfe~al~~~p~ 620 (917)
..+.... +....+.|+..+.+|+...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 2222100 011248999999999999887
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.98 E-value=0.054 Score=37.16 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.+|.+.|..+...|++++|+..|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45555555555555555555555555554
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=4.5 Score=53.67 Aligned_cols=231 Identities=15% Similarity=0.187 Sum_probs=137.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-cCC--------CCh
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI-FKY--------PHV 584 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~-f~~--------P~~ 584 (917)
..+.|..++.+....|.++.|....-.|.+.+ -|.+++..|.++...|+-..|+.+++..+.. |++ |..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 56899999999999999999999999999876 6889999999999999999999999999965 222 222
Q ss_pred --HHHHH--H-HHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--
Q 002477 585 --KDIWV--T-YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-- 657 (917)
Q Consensus 585 --~~lw~--~-yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~-- 657 (917)
..+.. . ..+.+....++.........|.++++..|. ...-++.+|+++.+ .+...+.+
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e--we~~hy~l~~yy~k-------------ll~~~~~~~~ 1811 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE--WEDKHYHLGKYYDK-------------LLEDYKSNKM 1811 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc--ccCceeeHHHHHHH-------------Hhhhhhcccc
Confidence 12222 0 112233333444567788888888888885 22234444433321 11111000
Q ss_pred ChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhC-------CCCchHHHHHHHHHHHHH---HcCC-------hhHHHHHH
Q 002477 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESG-------LPDKDVKAMCLKYAELEK---SLGE-------IDRARGIY 720 (917)
Q Consensus 658 ~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~-------~p~~~~~~~~l~~a~le~---~~g~-------~~~Ar~i~ 720 (917)
.+-..+..|+. +.-.|.+++..| .|. ...+|+.++.... +.|+ ...--...
T Consensus 1812 E~~g~~~~~l~----------~~~~~~~sl~yg~~~iyqsmPR--llTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i 1879 (2382)
T KOG0890|consen 1812 EKSGRVLSLLK----------AIYFFGRALYYGNQHLYQSMPR--LLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLI 1879 (2382)
T ss_pred cccccHHHHHH----------HHHHHHHHHHhcchhHHHhhhH--HHHHHHhhcchhcccccCChhhhhhhhHHHHHHHH
Confidence 00000000111 111222333321 221 2256777643222 2333 33334456
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhHhhhcccc--hhhhhhHH
Q 002477 721 VFASQFADPRSDTEFWNRWHEFEVN--HGNEDTFREMLRIKRSVSASYSQ--THFILPEY 776 (917)
Q Consensus 721 ~~a~~~~~P~~~~~~w~~~~~fe~~--~G~~~~a~~~lr~~r~~~~~~~~--~~~~~~~~ 776 (917)
+.+++.++|. .++..+.+.-.+ |-+.+.++-+-+|.-+|...|++ .|++.+.+
T Consensus 1880 ~~~~~~lp~Y---~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~ 1936 (2382)
T KOG0890|consen 1880 EEALEHLPTY---QFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALS 1936 (2382)
T ss_pred HHHHHhCcch---HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6677776665 556666666444 78888888888899999999974 66666554
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.54 E-value=1.4 Score=51.07 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=120.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH---HH---HHHHHHHHHHHh-CCCChHHHHH
Q 002477 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK---DI---WVTYLSKFVKRY-GKTKLERARE 609 (917)
Q Consensus 537 ~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~---~l---w~~yl~~~~~~~-~~~~~e~Ar~ 609 (917)
+|.=++.+-| ..+..+..+.--.|+-+.+++.+.++.+. .+-... -+ |...+..+..-. .....+.|..
T Consensus 179 ~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 4455555544 45555555555678889999999998873 222211 11 111122222110 2456899999
Q ss_pred HHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCCh---HHHHHHHHHHHHHhcCcchHHHHHHHH
Q 002477 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK---LGMYEIYIARAAEIFGVPKTREIYEQA 686 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~---~~l~~~~i~~~~~~~~~~~ar~~ye~a 686 (917)
+++......|+ +.-+.+.-|+++...|+.++|+..|++++.....-++ +-+|...... .-+.++++|...|.+.
T Consensus 255 lL~~~~~~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~-~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 255 LLEEMLKRYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH-MFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH-HHHchHHHHHHHHHHH
Confidence 99999999999 7788888899999999999999999999853322222 2344433332 4568999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHcc
Q 002477 687 IESGLPDKDVKAMCLKYAELEKSLGEI-------DRARGIYVFASQF 726 (917)
Q Consensus 687 l~~~~p~~~~~~~~l~~a~le~~~g~~-------~~Ar~i~~~a~~~ 726 (917)
++. ...+.+ -+.+..|-.+..+|+. ++|..+|.++-..
T Consensus 332 ~~~-s~WSka-~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 332 LKE-SKWSKA-FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred Hhc-cccHHH-HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 987 555543 2333445567778887 8888888877655
No 262
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.47 E-value=0.068 Score=36.60 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
.+|..+|.+|...|+++.|...|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998874
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=2.6 Score=44.41 Aligned_cols=148 Identities=17% Similarity=0.134 Sum_probs=101.7
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHH---HHHHHHHhcCc
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI---YIARAAEIFGV 676 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~---~i~~~~~~~~~ 676 (917)
..+++..|..+|..++...|. ...+-+.|+..+...|..+.|..++. ..|.+..-.-+.. .|.........
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~----~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILA----ALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHH----hCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456788888889998888888 56778888888888898888888887 4444433322222 34443444444
Q ss_pred chHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 677 PKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (917)
Q Consensus 677 ~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~l 756 (917)
+..-.+ ++.+.. .|++. ..-+.+|..+...|+.+.|.+.+-..+...--..+...-+.+.++..-.|+.+..---+
T Consensus 220 ~~~~~l-~~~~aa-dPdd~--~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDL-QRRLAA-DPDDV--EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHH-HHHHHh-CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 444433 344444 78776 67899999999999999999988877766222235567778888877888766654444
Q ss_pred H
Q 002477 757 R 757 (917)
Q Consensus 757 r 757 (917)
|
T Consensus 296 R 296 (304)
T COG3118 296 R 296 (304)
T ss_pred H
Confidence 3
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.41 E-value=0.79 Score=43.73 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT 651 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al 651 (917)
.|++++|..++.+++...|. +..+|..+...+...|+...|+.+|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~--~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPY--DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34555555555555555555 45555555555555555555555555443
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.35 E-value=13 Score=43.27 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCC---------CHHH--HHHHHHhcccHHHHHHHHHHH
Q 002477 128 ALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS---------HIED--FIEFLVKSKLWQEAAERLASV 196 (917)
Q Consensus 128 AL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~---------~~~~--~i~~l~~~~~~~~A~~~l~~~ 196 (917)
|.+..-.+-|+++|.+.+..+...-.. ++|...|-|.=....- +.++ -.+.-...|++++|.+.|..+
T Consensus 682 A~qfiEdnPHprLWrllAe~Al~Kl~l-~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 682 AIQFIEDNPHPRLWRLLAEYALFKLAL-DTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhh-hhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 333333333889999888877655554 6776666554222111 0011 112223458899999887654
Q ss_pred hcCCccccccCCCchHHHHHHHHHHhccccccccccHHHHHHhhhhcccch-hhHHHHHHHHHHHHhCcHHHHHHHHHHh
Q 002477 197 LNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE-VGRLWTSLADYYIRRELFEKARDIFEEG 275 (917)
Q Consensus 197 l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~lw~~la~~y~~~g~~e~A~~~~e~a 275 (917)
=..+ ....+...++++.. +-.++|.|-..-.|+ ....|..++.++..+..++.|++.|...
T Consensus 761 drrD--------LAielr~klgDwfr----------V~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 761 DRRD--------LAIELRKKLGDWFR----------VYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chhh--------hhHHHHHhhhhHHH----------HHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3221 22334444444432 334444433222222 2457888899998888999999888764
Q ss_pred h
Q 002477 276 M 276 (917)
Q Consensus 276 l 276 (917)
-
T Consensus 823 ~ 823 (1189)
T KOG2041|consen 823 G 823 (1189)
T ss_pred c
Confidence 4
No 266
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.27 E-value=16 Score=43.98 Aligned_cols=312 Identities=12% Similarity=0.132 Sum_probs=177.6
Q ss_pred hCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccCCC-h
Q 002477 380 QNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVNYKT-V 457 (917)
Q Consensus 380 ~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~-~~g~~~~A~~i~e~al~~~~~~-~ 457 (917)
.++..+..+.+.+.. ++..++-+++...+. ......+.+.+|.++. ...+++.|+..+++++.....+ .
T Consensus 25 ~~~~~l~~Y~kLI~~-------ai~CL~~~~~~~~l~--p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~ 95 (608)
T PF10345_consen 25 KSEEQLKQYYKLIAT-------AIKCLEAVLKQFKLS--PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL 95 (608)
T ss_pred CChhhHHHHHHHHHH-------HHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 466667666666544 566665555432221 1123567899999887 5899999999999998765431 1
Q ss_pred hhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHH-----HHHHcCCH
Q 002477 458 DHL-ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD-----LEESLGNL 531 (917)
Q Consensus 458 ~~l-~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----l~~~~g~~ 531 (917)
.++ -..-+.++.++.+.+... |.+.++++++.... .....|..... +....+++
T Consensus 96 ~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-------------------~~~~~w~~~frll~~~l~~~~~d~ 155 (608)
T PF10345_consen 96 TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-------------------YGHSAWYYAFRLLKIQLALQHKDY 155 (608)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-------------------cCchhHHHHHHHHHHHHHHhcccH
Confidence 111 122334566666665555 99999998865220 01223333222 23334799
Q ss_pred HHHHHHHHHHHhcc--CCCHHHHHH----HHHHHHHccCHHHHHHHHHHHhhccCC--------CChHHHHHHHHHHHHH
Q 002477 532 ESTRAVYERILDLR--IATPQIIIN----YALLLEEHKYFEDAFRVYERGVKIFKY--------PHVKDIWVTYLSKFVK 597 (917)
Q Consensus 532 ~~A~~~y~~al~~~--p~~~~~~~~----~a~~~~~~g~~e~A~~~~eral~~f~~--------P~~~~lw~~yl~~~~~ 597 (917)
..|...++.+.... ..++.+... -+.+....+..+++.+...+++..... +....+|...+.....
T Consensus 156 ~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 156 NAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999875 456654332 245556678788898888888654321 2234566655544332
Q ss_pred HhCCCChHHHHHH---HHHHHHh---CC---c---CC----------------------------cHHHHHHHHHHHHHh
Q 002477 598 RYGKTKLERAREL---FENAVET---AP---A---DA----------------------------VKPLYLQYAKLEEDY 637 (917)
Q Consensus 598 ~~~~~~~e~Ar~l---fe~al~~---~p---~---~~----------------------------~~~l~~~~a~~e~~~ 637 (917)
...+++..+... +.+.++. .| . +. ..-+|+.-+-.....
T Consensus 236 -l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~ 314 (608)
T PF10345_consen 236 -LQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYK 314 (608)
T ss_pred -HHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhc
Confidence 233444444443 3333332 11 0 00 001233333334446
Q ss_pred CCHHHHHHHHHHHHhhCCC-------CCh--H------HHHHHH----HHH-----HHHhcCcchHHHHHHHHHHh--CC
Q 002477 638 GLAKRAMKVYDQATKAVPN-------HEK--L------GMYEIY----IAR-----AAEIFGVPKTREIYEQAIES--GL 691 (917)
Q Consensus 638 g~~~~A~~~y~~al~~~p~-------~~~--~------~l~~~~----i~~-----~~~~~~~~~ar~~ye~al~~--~~ 691 (917)
|..++|.+.+++|++..-. .+. + ..|..+ +.. ..-.+++..+.+..+.+.+. ..
T Consensus 315 ~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 394 (608)
T PF10345_consen 315 GSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRS 394 (608)
T ss_pred cCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcC
Confidence 6666888888888764221 110 0 111111 111 12357777888888876654 12
Q ss_pred CC----chHHHHHHHHHHHHHHcCChhHHHHHHH
Q 002477 692 PD----KDVKAMCLKYAELEKSLGEIDRARGIYV 721 (917)
Q Consensus 692 p~----~~~~~~~l~~a~le~~~g~~~~Ar~i~~ 721 (917)
|. ...+.+++..|-.....|+.+.|...|.
T Consensus 395 ~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 395 PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 32 1223456667777788899999999998
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=7.2 Score=39.61 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHc-CCHHHHHH
Q 002477 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL-GNLESTRA 536 (917)
Q Consensus 458 ~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~-g~~~~A~~ 536 (917)
+|.+..|...+..+ +..++.+|.+++++++.+... .| ++..-.+.....+.++++- .++++|+.
T Consensus 71 hDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~--------~G------rf~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 71 HDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTD--------MG------RFTMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred hhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHh--------hh------HHHHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 44456666666665 445899999999998875220 01 1112344555677777765 89999999
Q ss_pred HHHHHHhccCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHH---HHHHHHHhCCCChHHH
Q 002477 537 VYERILDLRIAT------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY---LSKFVKRYGKTKLERA 607 (917)
Q Consensus 537 ~y~~al~~~p~~------~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~y---l~~~~~~~~~~~~e~A 607 (917)
.|+++-+..... -..++..|.+-...+++.+|+.+|++....- -.++.--|..- +...+-++-..+.-.+
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgLChl~~~D~v~a 214 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGLCHLCKADEVNA 214 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHHHhHhcccHHHH
Confidence 999998875433 2357778888888999999999999988741 12222223221 1111112233566677
Q ss_pred HHHHHHHHHhCCcC
Q 002477 608 RELFENAVETAPAD 621 (917)
Q Consensus 608 r~lfe~al~~~p~~ 621 (917)
...+++-.+..|.-
T Consensus 215 ~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 215 QRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHhcCCcc
Confidence 77888888888874
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.15 E-value=0.15 Score=52.92 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=56.2
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHH
Q 002477 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588 (917)
Q Consensus 526 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw 588 (917)
...|..++|..+|+.++.+.|.+|++.+.+|.|.+.+++.-+|-++|-+++.+ .|.+.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--sP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI--SPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--CCCchHHH
Confidence 45799999999999999999999999999999999999999999999999998 78776543
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=6 Score=41.74 Aligned_cols=128 Identities=16% Similarity=0.035 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCch
Q 002477 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (917)
Q Consensus 427 ~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 506 (917)
+.-+.-....|++..|...|..++...|.+. .+-..+++.++..|..+.|..++...-.....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~------------- 200 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAALPLQAQD------------- 200 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhCcccchh-------------
Confidence 3444455678999999999999999999987 89999999999999999999998874321110
Q ss_pred hhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 507 ~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
+........+.+.......... ..+++.+..+|+++++-+.+|..+...|+.+.|+..+-..++.
T Consensus 201 ------~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 201 ------KAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ------hHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0011111233444443332222 2456677789999999999999999999999999887777664
No 270
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.77 E-value=0.068 Score=56.60 Aligned_cols=119 Identities=23% Similarity=0.209 Sum_probs=92.3
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchH
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKT 679 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~a 679 (917)
..|.++.|.+.|..+|.+.|+ ...+|..-+.+..+.+....|+.-|..|+.++|+...-+.|..|... -+|.++++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r--llg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER--LLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH--HhhchHHH
Confidence 567899999999999999999 78899999999999999999999999999999998888888888874 66899999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 680 REIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 680 r~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
...+..+.+. .-+..+ ..|+. .+.-..+.+..=|..|+++.+.
T Consensus 202 a~dl~~a~kl-d~dE~~-~a~lK--eV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKL-DYDEAN-SATLK--EVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhc-cccHHH-HHHHH--HhccchhhhhhchhHHHHHHHH
Confidence 9999999887 322221 33443 2333445555555566666544
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.76 E-value=3.4 Score=47.92 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc-CCCCh--HHHHHHHHHHHHHHhCCCCh
Q 002477 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF-KYPHV--KDIWVTYLSKFVKRYGKTKL 604 (917)
Q Consensus 528 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f-~~P~~--~~lw~~yl~~~~~~~~~~~~ 604 (917)
....+.|..+++.+....|+.+-..+.-|+++...|+.++|+..|++++..- ..|.. .-.|..-...+ -..++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~----~~~~w 321 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM----FQHDW 321 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH----HHchH
Confidence 3467889999999999999988888889999999999999999999988631 12222 12233221111 23579
Q ss_pred HHHHHHHHHHHHhCCcCCcHHHH-HHHHHHHHHhCCH-------HHHHHHHHHHHh
Q 002477 605 ERARELFENAVETAPADAVKPLY-LQYAKLEEDYGLA-------KRAMKVYDQATK 652 (917)
Q Consensus 605 e~Ar~lfe~al~~~p~~~~~~l~-~~~a~~e~~~g~~-------~~A~~~y~~al~ 652 (917)
++|...|.+.++.... ++.+| +..|.++...|.. ++|...|.++-.
T Consensus 322 ~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 322 EEAAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999987666 43333 3344556667777 666666665543
No 272
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.74 E-value=21 Score=43.22 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=88.6
Q ss_pred CchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHH-HHHHcCCChHhH
Q 002477 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLR-FVEQEGIPIETS 158 (917)
Q Consensus 80 ~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~-~~~~~~~~~~~a 158 (917)
..+++.+|....++.|..+|+.+-.-..-+-.+.++|..+.|. .+-.++...|.+ +..=...+. ++...+.. +.|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~-d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGT--DDLTLQFLQNVYRDLGKL-DEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCC--chHHHHHHHHHHHHHhhh-hHH
Confidence 5678999999999999999999877777777778889998888 555677777754 333333343 44455665 999
Q ss_pred HHHHHHHHccCCCCHHHHHH---HHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHH
Q 002477 159 LRVYRRYLKYDPSHIEDFIE---FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLL 221 (917)
Q Consensus 159 ~~~~~r~l~~~P~~~~~~i~---~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~ 221 (917)
..+|+|+++..|+ .+-+.. -+++.+.|.+-.+.-.++..+ .++.++-+|.-.--++
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~------~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN------FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCcccchHHHHHHHHH
Confidence 9999999999999 333332 335555555433333333322 2567788887654433
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=0.88 Score=44.77 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCch
Q 002477 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (917)
Q Consensus 427 ~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~ 506 (917)
+.+|+.+...|+++.|...+..++.... +..=.+-+-..++.+....|.+++|+.+++......=
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-------------- 157 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-------------- 157 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--------------
Confidence 5566777778888888888888886432 1111123445677888888888888888776443210
Q ss_pred hhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 002477 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (917)
Q Consensus 507 ~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~ 547 (917)
....-...++++...|+-+.|+..|++++...+.
T Consensus 158 -------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 -------AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred -------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 1223345677788888888888888888877543
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=3.7 Score=40.54 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=63.3
Q ss_pred HHHHHHHhccCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 002477 536 AVYERILDLRIATPQ---IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFE 612 (917)
Q Consensus 536 ~~y~~al~~~p~~~~---~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe 612 (917)
...++....++.+.. +-+.+|..+.+.|++++|...++.++...++.+...+-..-+.... ...++++.|..+++
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq--~q~~k~D~AL~~L~ 150 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQ--LQQKKADAALKTLD 150 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHh
Confidence 334444444444432 3455677777777777777777777763222222222222222222 13455666666665
Q ss_pred HHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 613 NAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 613 ~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
...... ........-|.++...|+..+|+.-|++++...+++.
T Consensus 151 t~~~~~---w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 151 TIKEES---WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred cccccc---HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 542211 1233445566777777777777777777777765433
No 275
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.24 E-value=0.3 Score=50.79 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
..|+.++|..+|+.|+...|. .+.+.+.||.|.+..++.-+|-.+|-+|+...|.+...
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456788888888888888887 67788888888777777788888888888887776544
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.16 E-value=17 Score=43.20 Aligned_cols=280 Identities=18% Similarity=0.156 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHh-------ccCCChhhhHHHHHHH
Q 002477 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-----YKDIANARVIFDKAVQ-------VNYKTVDHLASIWCEW 467 (917)
Q Consensus 400 ~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~-----~g~~~~A~~i~e~al~-------~~~~~~~~l~~~w~~~ 467 (917)
..+...|+.+... .+...-..++.+|.. ..|.+.|..+|+.+.+ .. ++ .....+
T Consensus 229 ~~a~~~~~~~a~~--------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----~a~~~l 294 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----PAQYGL 294 (552)
T ss_pred hHHHHHHHHHHhh--------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----ccccHH
Confidence 4566777777654 233444555555554 3689999999999877 22 22 344556
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 002477 468 AEMELRHK-----NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL---GNLESTRAVYE 539 (917)
Q Consensus 468 a~~e~~~~-----~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~---g~~~~A~~~y~ 539 (917)
+.++.+.. +...|..+|.++..... +..-+..+.++..- .++..|..+|.
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----------------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAELGN----------------------PDAQYLLGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhcCC----------------------chHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 77776643 67889999999887632 23334445544433 35678999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 002477 540 RILDLRIATPQIIINYALLLEEH----KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (917)
Q Consensus 540 ~al~~~p~~~~~~~~~a~~~~~~----g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al 615 (917)
.+-.. .++.+.+.++.++... .+...|+..|.++...- .|.. .|.. ..+.. ++.+..+.+.-.+..+.
T Consensus 353 ~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A--~~~~--~~~~~-~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 353 LAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSA--AYLL--GAFYE-YGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-Chhh--HHHH--HHHHH-HccccccHHHHHHHHHH
Confidence 98875 5788888888888754 37889999999999862 2321 1211 11111 12234444444444433
Q ss_pred HhCCcCC-cHHHHHHHHHH-HHH----hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHh
Q 002477 616 ETAPADA-VKPLYLQYAKL-EED----YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 616 ~~~p~~~-~~~l~~~~a~~-e~~----~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~ 689 (917)
+.--... ....++....- ... .....++...|.++...-.......+-..|-.-..-..+++.+-..|.++...
T Consensus 425 ~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 3211100 11111111110 000 12445666666666543332222222111111000123467788888888776
Q ss_pred CCCCchHHHHHHHHHHHHHH-cC--ChhHHHHHHHHHHccCCCC
Q 002477 690 GLPDKDVKAMCLKYAELEKS-LG--EIDRARGIYVFASQFADPR 730 (917)
Q Consensus 690 ~~p~~~~~~~~l~~a~le~~-~g--~~~~Ar~i~~~a~~~~~P~ 730 (917)
. ....+..+.++.. .| .+..|..+|.++.+. +.+
T Consensus 505 -~-----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~-~~~ 541 (552)
T KOG1550|consen 505 -G-----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE-DSR 541 (552)
T ss_pred -h-----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc-Cch
Confidence 2 2445666665542 22 157888888888765 443
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.08 E-value=0.2 Score=34.21 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p 546 (917)
.+|...+.++...|++++|...|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666777777777777666665
No 278
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.97 Score=47.94 Aligned_cols=96 Identities=23% Similarity=0.215 Sum_probs=62.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhh
Q 002477 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (917)
Q Consensus 429 ~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 508 (917)
-|..|.+.++|..|+..|.++|+....+++=.+.+|..-|....-
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----------------------------------- 131 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----------------------------------- 131 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-----------------------------------
Confidence 356778888888899999998888776664444555444444433
Q ss_pred hhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 509 ~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
+|++-.|+.-..+++.++|.+..+++.-|.++.+.+++..|...++.++.+
T Consensus 132 -------------------l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 132 -------------------LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred -------------------HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555555566666666666666666666666666666666666654
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.76 E-value=4.5 Score=41.69 Aligned_cols=196 Identities=14% Similarity=0.200 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHhhccCC----CChHHHHHHHHHHHHHHhC
Q 002477 529 GNLESTRAVYERILDLRIATP----QIIINYALLLEEHKYFEDAFRVYERGVKIFKY----PHVKDIWVTYLSKFVKRYG 600 (917)
Q Consensus 529 g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~----P~~~~lw~~yl~~~~~~~~ 600 (917)
..++.|..-|++++++.+.-. .+.-....+..+.|++++....|.+.+...+. ..+..--+..++... .
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS---t 117 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS---T 117 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh---h
Confidence 478999999999999976543 35666778888899999988888877763211 111111222222221 2
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHH----HHHHHHHHhCCHHHHHHHHHHHHhhCCCCC----------hHHHHHHH
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYL----QYAKLEEDYGLAKRAMKVYDQATKAVPNHE----------KLGMYEIY 666 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~----~~a~~e~~~g~~~~A~~~y~~al~~~p~~~----------~~~l~~~~ 666 (917)
.++.+-....|+..++...+..+..+|+ .+|.++...|.+.+--+++++.-+.+..++ -+.+|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 2345556666666665543322344554 478888887877777777666555543321 24566666
Q ss_pred HHHHHHhcCcchHHHHHHHHHHh--CCCCchHHHHHH-HHHHHHHHcCChhHHHHHHHHHHccC
Q 002477 667 IARAAEIFGVPKTREIYEQAIES--GLPDKDVKAMCL-KYAELEKSLGEIDRARGIYVFASQFA 727 (917)
Q Consensus 667 i~~~~~~~~~~~ar~~ye~al~~--~~p~~~~~~~~l-~~a~le~~~g~~~~Ar~i~~~a~~~~ 727 (917)
|..+..+.+..+...+|++++.. ..|..-+..+.- .-|.+..+.|++++|..-|-.|.+.-
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 66677788888999999999875 245433211111 12456778889999988888887663
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=12 Score=39.86 Aligned_cols=119 Identities=8% Similarity=-0.068 Sum_probs=52.9
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCCh-HHHHHHHHHHHHHhcCcc
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA-VPNHEK-LGMYEIYIARAAEIFGVP 677 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~-~p~~~~-~~l~~~~i~~~~~~~~~~ 677 (917)
+.|++.+|-...++.++..|. +...+..--....-.|+....+..+++.+-. +|+-|- .++-.+|.-...+.|-+.
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 445555555556666655555 2222222222222345555555555555544 333221 122222222233455555
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002477 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFA 723 (917)
Q Consensus 678 ~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a 723 (917)
.|.+.-.++++. +|.+.- ..-..+.+....|++.++.+...+-
T Consensus 193 dAEk~A~ralqi-N~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQI-NRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccC-CCcchH--HHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555555555 443320 1122344444555555555554443
No 281
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.19 E-value=0.31 Score=32.79 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 626 l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
.++.+|.++.+.|++++|+.+|++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46778888888999999999999999988874
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.13 E-value=0.15 Score=35.62 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=17.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 552 IINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 552 ~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
|.++|.++...|++++|+.+|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777777777775543
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.68 E-value=6.2 Score=45.45 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=28.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHh
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral 576 (917)
++...++..+|-.+-++.-+. -+.+++.||+++.++.+|++|.+.|-+|=
T Consensus 782 lHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred heeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 334445555555544443332 23567777777777777777776665553
No 284
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.31 E-value=0.39 Score=53.45 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=53.6
Q ss_pred HHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCC
Q 002477 560 EEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639 (917)
Q Consensus 560 ~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~ 639 (917)
..-+.|+.|+..|.++|.+ +|++..+|..-.. .....+++..|..-+.+||+..|. ....|+.-|......+.
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~---a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRAL---AHLKVESFGGALHDALKAIELDPT--YIKAYVRRGTAVMALGE 87 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhh---hheeechhhhHHHHHHhhhhcCch--hhheeeeccHHHHhHHH
Confidence 3445566666666666665 6666555543321 111344566666666666666665 45556666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCCh
Q 002477 640 AKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 640 ~~~A~~~y~~al~~~p~~~~ 659 (917)
+.+|...|+.+....|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 66666666666666666443
No 285
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.29 E-value=1.6 Score=46.39 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCC
Q 002477 526 ESLGNLESTRAVYERILDLRIATP----QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (917)
Q Consensus 526 ~~~g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~ 601 (917)
.+.+++..|+..|.+.|..+..+| ..|.|.|......|++..|+.-..+|+.+ +|.+...+..=...+. ..
T Consensus 92 fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Akc~~---eL 166 (390)
T KOG0551|consen 92 FKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAKCLL---EL 166 (390)
T ss_pred HHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhHHHH---HH
Confidence 333444444555555554444443 46788888888899999999999999997 8887554332222222 22
Q ss_pred CChHHHHHHHHHHHHhCCc
Q 002477 602 TKLERARELFENAVETAPA 620 (917)
Q Consensus 602 ~~~e~Ar~lfe~al~~~p~ 620 (917)
..+..|....+..+...-.
T Consensus 167 e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHhhhhhhhHH
Confidence 3467777777777666544
No 286
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.05 E-value=0.39 Score=53.43 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhh
Q 002477 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (917)
Q Consensus 430 a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~ 509 (917)
|.-...-+.++.|...|-+|++.+|+++ .+|-.-+..+++.+++..|+.-..+|++..|
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca----~~~anRa~a~lK~e~~~~Al~Da~kaie~dP----------------- 69 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCA----IYFANRALAHLKVESFGGALHDALKAIELDP----------------- 69 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcce----eeechhhhhheeechhhhHHHHHHhhhhcCc-----------------
Confidence 3444556778888888888888888877 7777777777788888888888888887755
Q ss_pred hhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 002477 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (917)
Q Consensus 510 ~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~ 558 (917)
...+.+..-+......+.+-+|...|++...+.|+.+.+-..+...
T Consensus 70 ---~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 70 ---TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred ---hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 2445566666677777888888888888888888888776555443
No 287
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=6.4 Score=40.15 Aligned_cols=130 Identities=11% Similarity=-0.047 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002477 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (917)
Q Consensus 465 ~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~ 544 (917)
..-++-..+.|++.+|...|+.|+.+......+. --|...-+..-.....+...|+.++...|++-++.+-...++..
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkE--kP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKE--KPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhcc--CCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3344444566777777777777764421000000 00111101111123356667777777777777777777777877
Q ss_pred cCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH
Q 002477 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR 598 (917)
Q Consensus 545 ~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~ 598 (917)
.|.+..+++..|......=+..+|..-|..++++ +|.....-..=+..+..|
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--dpslasvVsrElr~le~r 311 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPSLASVVSRELRLLENR 311 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--ChhhHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777776 665544333333333333
No 288
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=8.3 Score=39.39 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------cCCCHH----------HHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDL--------RIATPQ----------IIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~--------~p~~~~----------~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
+...-++=+...|++.+|...|..++-. .|..|+ .++||++++...|++-+++......+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3344455556778888888888877643 566653 5788999999999999999999888885
Q ss_pred cCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 579 FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 579 f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
+|.+...+..-.. . +.+.=+..+|+.-|.++++..|.
T Consensus 260 --~~~nvKA~frRak-A--haa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 --HPGNVKAYFRRAK-A--HAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred --CCchHHHHHHHHH-H--HHhhcCHHHHHHHHHHHHhcChh
Confidence 7888665543321 1 12334678899999999999887
No 289
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=51 Score=40.64 Aligned_cols=235 Identities=14% Similarity=0.171 Sum_probs=124.3
Q ss_pred HHHHHHH--HHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CChhhhH
Q 002477 385 VEQWHRR--VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY-KTVDHLA 461 (917)
Q Consensus 385 ~~~w~~~--~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~-~~~~~l~ 461 (917)
...|... +++-.+-..+|++.|-+| -|| ..+........+.|.+++-..++.-|-+.-. ..++ .
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika---dDp--------s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA---DDP--------SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--S 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc---CCc--------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--H
Confidence 3445444 444456667777777553 234 6677777777788888887777766654321 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCh----hHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSV----EVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~ 537 (917)
.+.+.||.. ++..+ ++..+.-|.. .+..+...++...+...+..+..-|..++..+..+|.+..|...
T Consensus 1171 eLi~AyAkt----~rl~e----lE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1171 ELIFAYAKT----NRLTE----LEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHHHHHh----chHHH----HHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444445433 22222 1222222221 11122223333444555666667777777766666666555544
Q ss_pred HHHHHhc---------cCC----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 538 YERILDL---------RIA----------------TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 538 y~~al~~---------~p~----------------~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
-+++-.. +.+ +.+-.-.+..+|+..|+|++-+.++|.|+.+ .--...++...
T Consensus 1243 aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL--ERAHMgmfTEL- 1319 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL--ERAHMGMFTEL- 1319 (1666)
T ss_pred hhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch--hHHHHHHHHHH-
Confidence 3333211 111 2233456788999999999999999999987 22233334332
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHh--CCc----CCcHHHHHHHHHHHHHhCCHHHHHHH
Q 002477 593 SKFVKRYGKTKLERARELFENAVET--APA----DAVKPLYLQYAKLEEDYGLAKRAMKV 646 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~--~p~----~~~~~l~~~~a~~e~~~g~~~~A~~~ 646 (917)
..++.++ ++++.++-++---.. .|. .....+|..+.-++.+...++.|.-.
T Consensus 1320 aiLYsky---kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1320 AILYSKY---KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHhc---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3344444 355555544432211 110 01244677777777666667766433
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.61 E-value=7.6 Score=43.24 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=103.3
Q ss_pred HHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 541 al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
.+...|-+..+.+.++.++..+|+.+.|....|||+-.|.. .|..-...+......| .+|=-|. .+.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~-----~~~~~F~~~~~~~~~g---~~rL~~~-----~~e 98 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER-----AFHPSFSPFRSNLTSG---NCRLDYR-----RPE 98 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----HHHHHhhhhhcccccC---ccccCCc-----ccc
Confidence 35668999999999999999999999999999999976421 1211111100000110 1111111 112
Q ss_pred CCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHH--------h
Q 002477 621 DAVKPL---YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE--------S 689 (917)
Q Consensus 621 ~~~~~l---~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~--------~ 689 (917)
+..+ ...|+....+.|-++.|.++.+-.+..+|.++.+.+....=..+.+.+.++--..+++.... .
T Consensus 99 --NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 99 --NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred --chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 3444 44577788889999999999999999999955543222111222445566656666665443 2
Q ss_pred CCCCchHHHHHHHHHHHHHHcCCh---------------hHHHHHHHHHHccCCCC
Q 002477 690 GLPDKDVKAMCLKYAELEKSLGEI---------------DRARGIYVFASQFADPR 730 (917)
Q Consensus 690 ~~p~~~~~~~~l~~a~le~~~g~~---------------~~Ar~i~~~a~~~~~P~ 730 (917)
+|+ +.+..|-....+++. +.|+..+.+|+.. -|.
T Consensus 177 -lPn-----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~-fP~ 225 (360)
T PF04910_consen 177 -LPN-----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR-FPW 225 (360)
T ss_pred -Ccc-----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH-hHH
Confidence 443 233333334445555 8999999999987 564
No 291
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.39 E-value=0.32 Score=51.72 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
.|.+++|+..|.++++.+|.+. .++...+..++..+....|++-+..++.+++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a----~l~~kr~sv~lkl~kp~~airD~d~A~ein~ 179 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLA----ILYAKRASVFLKLKKPNAAIRDCDFAIEINP 179 (377)
T ss_pred CcchhhhhcccccccccCCchh----hhcccccceeeeccCCchhhhhhhhhhccCc
Confidence 4556666666666666655554 5555555555555555555555555555544
No 292
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.17 E-value=3.5 Score=35.68 Aligned_cols=79 Identities=16% Similarity=0.055 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHc
Q 002477 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167 (917)
Q Consensus 88 ~~~~eraL~~~p~~~~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~ 167 (917)
...+++++..+|+++.....++..++..|+++.|...+-..++..|.......-..++.+....|.. +..+.-|||-|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~RRkL~ 86 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999655677778888888877765 556666776553
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.05 E-value=0.51 Score=32.88 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQV 452 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~~ 452 (917)
|..+|.+|.+.|++++|..+|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678899999999999999999996643
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.86 E-value=0.51 Score=31.72 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 002477 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (917)
Q Consensus 425 lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~ 456 (917)
.++.+|.++...|++++|+.+|++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677888888899999999999998887754
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=37 Score=40.62 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHH------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD------IWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~------lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
.+.-.+|.+|...+++.+|+..|-.+.. +...+ ++..+..+...- -.-+.++|.+++-+-....|+
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~----~~vf~lI~k~nL~d~i~~~Iv~L-mll~skka~~lLldn~d~ip~ 577 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQD----KDVFDLIKKHNLFDQIKDQIVLL-MLLDSKKAIDLLLDNRDSISP 577 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccC----hHHHHHHHHHhhHHHHHHHHHHH-HccchhhHHHHHhhccccCCH
Confidence 3444489999999999999999987754 33332 233333222211 123456676666655544444
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.35 E-value=52 Score=38.78 Aligned_cols=181 Identities=17% Similarity=0.131 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-ChhhhHHH---HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHH
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK-TVDHLASI---WCEWAEMELRHKNFKGALELMRRATAEPSVEVRR 497 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~-~~~~l~~~---w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~ 497 (917)
.+.+|..+|......-.++.|...|-++-.-..- -+.-+..+ -..-|++-.--|.+++|.++|-.+-...
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD------ 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD------ 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh------
Confidence 5678888888777777777887777665321110 00000000 1122333333456666666664432110
Q ss_pred hhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 002477 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA---TPQIIINYALLLEEHKYFEDAFRVYER 574 (917)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~---~~~~~~~~a~~~~~~g~~e~A~~~~er 574 (917)
.-+.+..+.|++-....+++..-. +.+ -.++|.+.|........+++|.+.|..
T Consensus 765 ----------------------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ----------------------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ----------------------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112233344444444443332111 111 136888899988888899999999988
Q ss_pred HhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002477 575 GVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (917)
Q Consensus 575 al~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~a 650 (917)
+-.. .+ ++..++. ...++ -+|.+....|. +.++.-.+|++....|.-++|...|-|.
T Consensus 822 ~~~~---e~-------~~ecly~---le~f~----~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 822 CGDT---EN-------QIECLYR---LELFG----ELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred ccch---Hh-------HHHHHHH---HHhhh----hHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 7542 11 2222221 11122 24555566787 5677888899999999999999888654
No 297
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.34 E-value=0.6 Score=30.31 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
..|..+|.++...|+++.|...|.++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46778888888888888888888888887664
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.06 E-value=29 Score=36.00 Aligned_cols=189 Identities=14% Similarity=0.191 Sum_probs=96.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHH---
Q 002477 520 FYVDLEESLGNLESTRAVYERILDLR------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT--- 590 (917)
Q Consensus 520 ~~~~l~~~~g~~~~A~~~y~~al~~~------p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~--- 590 (917)
..+.+...+|++++....|.+++..- ..+...+.+.-.+-....+.+--...|+.-+...++..+..+|..
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 34445556677777777777666431 111222333333333344444445556665555445545555532
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCcC----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 591 YLSKFVKRYGKTKLERARELFENAVETAPAD----------AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 591 yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~----------~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
-+.++. +..+.+-+...++.+.-..|..+ .-.++|-.=.+++..+.+-..-..+|++++..-..-|-.
T Consensus 150 KLgkl~--fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 150 KLGKLY--FDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred hHhhhh--eeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 111111 12233444444555544444321 113466666778888888899999999998754322211
Q ss_pred HHHHHHHH-----HHHHhcCcchHHHHHHHHHHh-CCCCchHHHHHHH---HHHHHHHcC
Q 002477 661 GMYEIYIA-----RAAEIFGVPKTREIYEQAIES-GLPDKDVKAMCLK---YAELEKSLG 711 (917)
Q Consensus 661 ~l~~~~i~-----~~~~~~~~~~ar~~ye~al~~-~~p~~~~~~~~l~---~a~le~~~g 711 (917)
.+ .+.|. .....|.+++|..-|-+|.+. ....+.....|+. +|++..+.|
T Consensus 228 lI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 228 LI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 11 12221 112346678888777777765 1122233345655 466666655
No 299
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.00 E-value=9.3 Score=34.21 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC
Q 002477 533 STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (917)
Q Consensus 533 ~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P 582 (917)
.+.+.|.++..+.|..+...+.+|.-+.....++++....++++.+ ..|
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv-~~p 110 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV-TNP 110 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-cCC
Confidence 4567899999999999999999999888888999999999999986 345
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.75 E-value=47 Score=39.53 Aligned_cols=255 Identities=15% Similarity=0.087 Sum_probs=148.2
Q ss_pred CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHH
Q 002477 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-----DIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (917)
Q Consensus 397 ~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g-----~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e 471 (917)
.+.+.++..|+.+.......... ..+..-..+|.+|.+.. +...|..+|.++-.....+ .-..++.++
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~-~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~------a~~~lg~~~ 335 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATK-GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD------AQYLLGVLY 335 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh-cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch------HHHHHHHHH
Confidence 36678888888887610000000 12345677888888753 6788999999998876543 334455554
Q ss_pred Hhc---CCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 002477 472 LRH---KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDL 544 (917)
Q Consensus 472 ~~~---~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~----~g~~~~A~~~y~~al~~ 544 (917)
... .++..|.++|..|..... ......++.++.. ..+...|..+|.++-+.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~----------------------~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH----------------------ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC----------------------hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 332 467899999999986532 2333344444433 24789999999999998
Q ss_pred cCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHH--HHhCCCChHHHHHHHHHHHHhCCc
Q 002477 545 RIATPQIIINYALLLEEH-KYFEDAFRVYERGVKIF-KYPHVKDIWVTYLSKFV--KRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 545 ~p~~~~~~~~~a~~~~~~-g~~e~A~~~~eral~~f-~~P~~~~lw~~yl~~~~--~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
. .|.+...++.+++-. +.++.+...+.....+- ..+.....+........ ...-....+++..++.++...-.
T Consensus 394 g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~- 470 (552)
T KOG1550|consen 394 G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGN- 470 (552)
T ss_pred c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccC-
Confidence 6 455444444444322 66666666665554431 12222222222211000 00012357788888888765433
Q ss_pred CCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHH-HHHhcCcchHHHHHHHHHHh
Q 002477 621 DAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR-AAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 621 ~~~~~l~~~~a~~e~~----~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~-~~~~~~~~~ar~~ye~al~~ 689 (917)
....+.++..+.. ..+++.|...|.++.... .....-.+|+.. -.....+..|...|.++.+.
T Consensus 471 ---~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 471 ---ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ---HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 3456666666653 236889999999998876 222222233321 01111257788899988876
No 301
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.40 E-value=0.62 Score=46.74 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=53.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCCh
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~ 584 (917)
+....++.+.+.++|.+++++-|.....|..++...+..|.++.|.+.|++.+++ +|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l--dp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL--DPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC--Cccc
Confidence 3456688999999999999999999999999999999999999999999999998 7765
No 302
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=19 Score=41.39 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=102.9
Q ss_pred cCCHHHHHHHHHHHHhcc-CCChhh-------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh-hcCCch
Q 002477 436 YKDIANARVIFDKAVQVN-YKTVDH-------LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA-ADGNEP 506 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~-~~~~~~-------l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~-~~~~~~ 506 (917)
...+++|...|.-+..+. |+++.- -....+..+.+...+|+.+-|..+.+|++-.-......... ..|.-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456788888888877643 222200 01667788999999999888888887776221100000000 011100
Q ss_pred hhhhhhccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CHHHHHHHHHHH-HHccCHHHHHHHHHHHh---hc
Q 002477 507 VQMKLHKSLR---LWTFYVDLEESLGNLESTRAVYERILDLRIA-TPQIIINYALLL-EEHKYFEDAFRVYERGV---KI 578 (917)
Q Consensus 507 ~~~~~~~~~~---~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~-~~~~~~~~a~~~-~~~g~~e~A~~~~eral---~~ 578 (917)
.--..|.+-. +...|...+.+.|=+..|.++.+-++.++|. +|-....+...| .+..+|.=-+..++..- .+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 0001122222 2234555667789999999999999999998 888877776655 34455554444444431 11
Q ss_pred cCCCChHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCc
Q 002477 579 FKYPHVKDIWVTYLSKFVKRYGKT--KLERARELFENAVETAPA 620 (917)
Q Consensus 579 f~~P~~~~lw~~yl~~~~~~~~~~--~~e~Ar~lfe~al~~~p~ 620 (917)
...|+.. +..-+..|..+ +.. ..+.|+.++.+|+...|.
T Consensus 411 ~~~PN~~--yS~AlA~f~l~-~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFG--YSLALARFFLR-KNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCch--HHHHHHHHHHh-cCChhhHHHHHHHHHHHHHhCcH
Confidence 1245431 22222222222 222 367889999999998886
No 303
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.23 E-value=12 Score=42.81 Aligned_cols=124 Identities=13% Similarity=-0.002 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHH
Q 002477 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIY 683 (917)
Q Consensus 604 ~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~y 683 (917)
.+-.+.+...+++..|. +..+..+-+-+...+|+..+|...|.+|+-..|+..+-...........+.|-...|--|.
T Consensus 195 ~~~~~~~~~~glq~~~~--sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iIL 272 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNTS--SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVIL 272 (886)
T ss_pred HHHHHHHHHHhhhcCch--hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhhee
Confidence 57788888889999888 5555555555555699999999999999999888655433333333335667788888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCH
Q 002477 684 EQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT 733 (917)
Q Consensus 684 e~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~ 733 (917)
..|+.. .|.-. .-....+.++..+|++.+..-.|.++.+. +|....
T Consensus 273 hAA~~d-A~~~t--~n~y~l~~i~aml~~~N~S~~~ydha~k~-~p~f~q 318 (886)
T KOG4507|consen 273 HAALDD-ADFFT--SNYYTLGNIYAMLGEYNHSVLCYDHALQA-RPGFEQ 318 (886)
T ss_pred ehhccC-Ccccc--ccceeHHHHHHHHhhhhhhhhhhhhhhcc-CcchhH
Confidence 888876 55332 33666788888999999999999999988 776444
No 304
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.91 E-value=1.2 Score=44.87 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
..++.+.|.++|.|+++..|. ...-|+.++.+.++.|+.+.|.+.|+..++++|++.
T Consensus 7 ~~~D~~aaaely~qal~lap~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999998 788999999999999999999999999999999854
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.62 E-value=5.6 Score=40.73 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=66.2
Q ss_pred CchHHHHHHHHHHhccCCCcc-CCCcHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhccC--CChhhhHHHHHHH
Q 002477 398 NPTKQILTYTEAVRTVDPMKA-VGKPHTLWVAFAKLYETYKDI-------ANARVIFDKAVQVNY--KTVDHLASIWCEW 467 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~-~~~~~~lw~~~a~~~~~~g~~-------~~A~~i~e~al~~~~--~~~~~l~~~w~~~ 467 (917)
..++|++.|.-|+-...-.+. ...-..+++.+|-+|...|+- ..|...|++++.... ...-+-..+....
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 456788888777754211100 012357899999999888884 457777777776432 2222334677789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 468 AEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 468 a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
|++..+.|++++|.+.|.+++..+.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998754
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.17 E-value=8.8 Score=43.00 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC------C--hHHHHHHH
Q 002477 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP------H--VKDIWVTY 591 (917)
Q Consensus 520 ~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P------~--~~~lw~~y 591 (917)
.-+.++....+...+..--+.++..-.+++....--++++.-+|++.+|.+.+-+.=-. ..| . ..-+|+..
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCc
Confidence 33444455555666665566666665677788888899999999999999887543211 122 2 22356665
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHh---------CCc-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 002477 592 LSKFVKRYGKTKLERARELFENAVET---------APA-------DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (917)
Q Consensus 592 l~~~~~~~~~~~~e~Ar~lfe~al~~---------~p~-------~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p 655 (917)
+..+. ..+.+.-+.-+|.+|+.. .|. +....+.++.|-.+...|..-.|.+.|..+.+..-
T Consensus 290 GcIh~---~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 290 GCIHY---QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred ceEee---ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 43222 456788888888888851 111 12457889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHH
Q 002477 656 NHEKLGMYEIYIAR 669 (917)
Q Consensus 656 ~~~~~~l~~~~i~~ 669 (917)
.+|++|+...-...
T Consensus 367 ~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 367 RNPRLWLRLAECCI 380 (696)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999876654443
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.75 E-value=18 Score=41.46 Aligned_cols=106 Identities=19% Similarity=0.137 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~ 503 (917)
......+.++.++|-.+.|..+- .++ ..-+.+| ++.|+++.|.++.+. .
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~--------~D~----~~rFeLA---l~lg~L~~A~~~a~~---~------------- 344 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFV--------TDP----DHRFELA---LQLGNLDIALEIAKE---L------------- 344 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS--------S-H----HHHHHHH---HHCT-HHHHHHHCCC---C-------------
T ss_pred hHHHHHHHHHHHCCCHHHHHhhc--------CCh----HHHhHHH---HhcCCHHHHHHHHHh---c-------------
Confidence 55667777777777766665432 112 3333333 677777777654322 1
Q ss_pred CchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 504 ~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
+++..|..+++.....|+++-|..+|+++-+ +-.+..+|...|+.+.-.++-+.+..
T Consensus 345 ---------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 345 ---------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp ---------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred ---------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 2467888888888888888888888877654 33455556667777666666666655
No 308
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.20 E-value=2.1 Score=27.49 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 626 l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
.|..+|.++...|+++.|...|+++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5778888888888888888888888887765
No 309
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.16 E-value=14 Score=31.96 Aligned_cols=49 Identities=12% Similarity=-0.005 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 002477 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 607 Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~ 657 (917)
....+++.++.+|+ +....+.+|..+...|+++.|++.+-..++.++..
T Consensus 7 ~~~al~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 35667888899999 78999999999999999999999999999988774
No 310
>PF13041 PPR_2: PPR repeat family
Probab=83.86 E-value=3.3 Score=31.15 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhhhcc--cchhchHHHHHHH
Q 002477 250 RLWTSLADYYIRRELFEKARDIFEEGMMTV--VTVRDFSVIFDSY 292 (917)
Q Consensus 250 ~lw~~la~~y~~~g~~e~A~~~~e~al~~~--~~~~d~~~i~~~y 292 (917)
..|+.+...|.+.|++++|.++|++..+.- |+...+..+..++
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999999999863 5566666655554
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.41 E-value=8.3 Score=38.20 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~ 491 (917)
..|..+|.+|.+.|+++.|...|.++... ..++....++++.++.+.+-.+++..+...+.++-..+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 66889999999999999999999998764 33445556899999999999999999999999987654
No 312
>PRK10941 hypothetical protein; Provisional
Probab=82.82 E-value=7 Score=41.44 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 520 ~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
..-..+.+.++++.|..+.++++.+.|++|.-|-..|.++.+.|.+..|..-++..++. +|+..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp 249 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDP 249 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCch
Confidence 34455677788888888888888888888888888888888888888888888888885 66654
No 313
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.07 E-value=6 Score=45.14 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCCHHH-----HHHHHHhcccHHHHHHH
Q 002477 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED-----FIEFLVKSKLWQEAAER 192 (917)
Q Consensus 118 ~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~~~~-----~i~~l~~~~~~~~A~~~ 192 (917)
++.+++..-.+++.+|. +..+..+..-+-+..|.+ ..|..++.+++-+.|.+.+. +...|-+.|...+|.-+
T Consensus 195 ~~~~~~~~~~glq~~~~--sw~lH~~as~YWR~~G~~-~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iI 271 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNTS--SWVLHNMASFYWRIKGEP-YQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVI 271 (886)
T ss_pred HHHHHHHHHHhhhcCch--hHHHHHHHHHHHHHcCCh-hhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhhe
Confidence 45677777778877772 333333334444567777 78888888888887775332 22467788888888877
Q ss_pred HHHHhcCCcc
Q 002477 193 LASVLNDDQF 202 (917)
Q Consensus 193 l~~~l~~~~~ 202 (917)
+-.++.+..+
T Consensus 272 LhAA~~dA~~ 281 (886)
T KOG4507|consen 272 LHAALDDADF 281 (886)
T ss_pred eehhccCCcc
Confidence 7777765433
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.48 E-value=19 Score=35.55 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCC--chHHH-
Q 002477 623 VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD--KDVKA- 698 (917)
Q Consensus 623 ~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~-~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~--~~~~~- 698 (917)
....+..+|.++.+.|+.+.|++.|.++...+... ..+.++...|......+++..+.....++-.. ... +....
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~n 113 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHH
Confidence 35688899999999999999999999988876442 34667777777667778888888887777664 211 11101
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHH
Q 002477 699 -MCLKYAELEKSLGEIDRARGIYVFAS 724 (917)
Q Consensus 699 -~~l~~a~le~~~g~~~~Ar~i~~~a~ 724 (917)
+-..-|-.....|++..|-..|-.+.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 11111223345567777777766553
No 315
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.52 E-value=1.5e+02 Score=36.35 Aligned_cols=250 Identities=13% Similarity=0.025 Sum_probs=140.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--C---hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhH
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--T---VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV 495 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~--~---~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~ 495 (917)
..+.+-+.+|-......++.+|..+..++...-+. . -+-++..---.+.+.+..++++.|..+-+.++..-|..
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~- 491 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA- 491 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-
Confidence 34566666666667788899988888876543221 1 11122333334556678899999999999998653310
Q ss_pred HHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cCCCHHHHHHH--HHHHHHccCH--HH
Q 002477 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL----RIATPQIIINY--ALLLEEHKYF--ED 567 (917)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~~--a~~~~~~g~~--e~ 567 (917)
............+.+..-.|++++|+.+..++.+. +.-.-.+|..+ +.++..+|.. ++
T Consensus 492 --------------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 492 --------------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred --------------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00112233444555666779999999998888876 33334556554 6777888832 22
Q ss_pred HHHHHHHHhhc--cCCCChHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCcCCcH-HHHHHHHHHHHHhCCHHHH
Q 002477 568 AFRVYERGVKI--FKYPHVKDIWVTYLSKFVKRYG-KTKLERARELFENAVETAPADAVK-PLYLQYAKLEEDYGLAKRA 643 (917)
Q Consensus 568 A~~~~eral~~--f~~P~~~~lw~~yl~~~~~~~~-~~~~e~Ar~lfe~al~~~p~~~~~-~l~~~~a~~e~~~g~~~~A 643 (917)
....|.+.-.. +..|.+.-....++..+..++. .....+++.-++-.....|..... -.+++++.++...|++++|
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHH
Confidence 23333222221 1234332222222222221111 123456666666666665653221 2335788899999999999
Q ss_pred HHHHHHHHhhCCCC--ChHHHHHHHHH---HHHHhcCcchHHHHHHH
Q 002477 644 MKVYDQATKAVPNH--EKLGMYEIYIA---RAAEIFGVPKTREIYEQ 685 (917)
Q Consensus 644 ~~~y~~al~~~p~~--~~~~l~~~~i~---~~~~~~~~~~ar~~ye~ 685 (917)
.....+.......+ ...+.-.++.. .....|+...++....+
T Consensus 638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99998887765443 23333333221 11234666666655554
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.59 E-value=17 Score=38.65 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~ 595 (917)
.+...++..+...|+++.+...+++.+..+|.+..+|..+...|...|+...|+..|+++-..+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~---------------- 217 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL---------------- 217 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh----------------
Confidence 5556677788888999999999999999999999999999999999999999999999986631
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 596 VKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 596 ~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
.+-.+-..-.+++.+|++++...|.
T Consensus 218 ~edlgi~P~~~~~~~y~~~~~~~~~ 242 (280)
T COG3629 218 AEELGIDPAPELRALYEEILRQDPL 242 (280)
T ss_pred hhhcCCCccHHHHHHHHHHhccccc
Confidence 1111334455666666666554443
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.59 E-value=19 Score=36.84 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHhc---cCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhh
Q 002477 436 YKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~---~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (917)
.-.++.|...|.-|+-. -...+...+.+++..|-++...++.+.....+++|+..-.. .......+.. --
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~-----a~~~e~~~~~--~~ 162 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE-----AYENEDFPIE--GM 162 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH-----HHHhCcCCCC--Cc
Confidence 34667777777776642 12222345788889998888888755555555554432110 0000000000 00
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 002477 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT-PQIIINYAL 557 (917)
Q Consensus 513 ~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~ 557 (917)
....+.+..+.+....|++++|...|.+++...-.+ +..+.+.|+
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 134566677778888888888888888888753322 234554443
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.19 E-value=12 Score=28.79 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 002477 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (917)
Q Consensus 628 ~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~ 668 (917)
+.+|--..+.|++++|+...+.+++..|++.........|.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 33444556778888888888888888888766654444444
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.38 E-value=4.1 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
..++.++|.++...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788899999999999999999998885
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.46 E-value=1.7e+02 Score=35.29 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHH
Q 002477 173 IEDFIEFLVKSKLWQEAAERLA 194 (917)
Q Consensus 173 ~~~~i~~l~~~~~~~~A~~~l~ 194 (917)
.++.|.++++.+.|++|...-+
T Consensus 359 ~~Dhi~Wll~~k~yeeAl~~~k 380 (846)
T KOG2066|consen 359 QEDHIDWLLEKKKYEEALDAAK 380 (846)
T ss_pred cchhHHHHHHhhHHHHHHHHHH
Confidence 5778899999999999987654
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.41 E-value=82 Score=31.64 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=62.3
Q ss_pred HHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC--CCHHHHHHHHHHHHHcCC
Q 002477 671 AEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR--SDTEFWNRWHEFEVNHGN 748 (917)
Q Consensus 671 ~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~--~~~~~w~~~~~fe~~~G~ 748 (917)
+...+-+.|+..|-++=. .|.-..+++.+.+|.++.+ -+.++|+.+|-++++..+|+ .++++...++....+.|+
T Consensus 117 Wsr~~d~~A~~~fL~~E~--~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEG--TPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCcHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 455677888888876544 3444445888888988875 58999999999999996554 578999999999999999
Q ss_pred HHHH
Q 002477 749 EDTF 752 (917)
Q Consensus 749 ~~~a 752 (917)
.+.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 8775
No 322
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.33 E-value=1.7e+02 Score=34.52 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=35.0
Q ss_pred cchhhhhhHHHHhhhhhhchhHhhhHhhhcCCcccHHHHHHHh
Q 002477 767 SQTHFILPEYLMQKDQRLSIDDAKDKLKQAGVHEDEMAALERQ 809 (917)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 809 (917)
.+|++-+++.|+.. ..+++|-+.+-+||...++|..||+=
T Consensus 804 ~dVy~pyaqwLAE~---DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAEN---DRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ccccchHHHHhhhh---hhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 57999999999986 56889999999999999999999874
No 323
>PRK10941 hypothetical protein; Provisional
Probab=76.07 E-value=34 Score=36.37 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i 667 (917)
.+++++|...-+..+...|+ ++.-+...|-++.+.|.+..|+.-++.-++.+|+++...+-...+
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~--dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 194 EKQMELALRASEALLQFDPE--DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34566666666666666666 455555566666666666666666666666666655554443333
No 324
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.54 E-value=45 Score=37.03 Aligned_cols=133 Identities=13% Similarity=0.161 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCC---Ch
Q 002477 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHK--YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKT---KL 604 (917)
Q Consensus 530 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g--~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~---~~ 604 (917)
.++.-..+...++..+|.+--+|......+.+++ ++..-+++.+++++. +|.++..|. |- .|+...... ..
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~--D~RNfh~W~-YR-RfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ--DPRNFHAWH-YR-RFVVEQAERSRNLE 165 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CcccccchH-HH-HHHHHHHhcccccc
Confidence 4556666777888888988889999888888776 368888999999996 899988887 43 333322111 24
Q ss_pred HHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHH------hCC------HHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 002477 605 ERARELFENAVETAPADAVKPLYLQYAKLEED------YGL------AKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (917)
Q Consensus 605 e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~------~g~------~~~A~~~y~~al~~~p~~~~~~l~~~~i~ 668 (917)
..=.+.-.++|..++. +...|-.-..+... .|. ...-...-..|+-.+|++...|.|..++.
T Consensus 166 ~~El~ftt~~I~~nfS--NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFS--NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred hhHHHHHHHHHhccch--hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 4556677888888777 56677777766653 341 12233444556667888888888866664
No 325
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.13 E-value=1.2e+02 Score=35.26 Aligned_cols=166 Identities=15% Similarity=0.072 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHcC-CChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cCC-
Q 002477 475 KNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-----RIA- 547 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~-----~p~- 547 (917)
+.|++|...|.-++.. +|..+... -.-.|-...-....+++...+|+.+.|..+.+|+|-. .|.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~l---------L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F 322 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLIL---------LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNF 322 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeee---------eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccc
Confidence 3477777777777644 33211000 0001334455566777777888877777766666532 111
Q ss_pred ---------------CHH---HHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHhCCCChHHHH
Q 002477 548 ---------------TPQ---IIINYALLLEEHKYFEDAFRVYERGVKIFKYPH-VKDIWVTYLSKFVKRYGKTKLERAR 608 (917)
Q Consensus 548 ---------------~~~---~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~-~~~lw~~yl~~~~~~~~~~~~e~Ar 608 (917)
+-. ++..|...+.+.|.+..|+..+.-.+.+ +|. ++-....+++.+..+ ..+++=.+
T Consensus 323 ~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--dp~eDPl~~l~~ID~~ALr--areYqwiI 398 (665)
T KOG2422|consen 323 IPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--DPSEDPLGILYLIDIYALR--AREYQWII 398 (665)
T ss_pred ccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCcCCchhHHHHHHHHHHH--HHhHHHHH
Confidence 222 3456788889999999999999999998 666 332233344444332 24577788
Q ss_pred HHHHHH-----HHhCCcCCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCC
Q 002477 609 ELFENA-----VETAPADAVKPLYLQYAKLEEDYGL---AKRAMKVYDQATKAVPN 656 (917)
Q Consensus 609 ~lfe~a-----l~~~p~~~~~~l~~~~a~~e~~~g~---~~~A~~~y~~al~~~p~ 656 (917)
++|+.. +...|+ -..-+.+|.|+..... ...|...+.+|++..|.
T Consensus 399 ~~~~~~e~~n~l~~~PN---~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPN---FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHhhccHhhcCC---chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 888766 455665 3455667777776554 56788899999999885
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.03 E-value=5.6 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhhhcc
Q 002477 251 LWTSLADYYIRRELFEKARDIFEEGMMTV 279 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~al~~~ 279 (917)
.+..||.+|..+|++++|..++++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 56789999999999999999999999853
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.95 E-value=5.1 Score=29.42 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhhhc
Q 002477 253 TSLADYYIRRELFEKARDIFEEGMMT 278 (917)
Q Consensus 253 ~~la~~y~~~g~~e~A~~~~e~al~~ 278 (917)
+.||..|+..|+.+.|+.++++.+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46899999999999999999999963
No 328
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.56 E-value=20 Score=38.09 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~ 489 (917)
.......++..+...|+++.+...+++.+..+|.+. .+|..+...+.+.|+...|+..|++.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 346678888999999999999999999999999988 9999999999999999999999998754
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.13 E-value=2.3e+02 Score=34.21 Aligned_cols=204 Identities=18% Similarity=0.220 Sum_probs=112.3
Q ss_pred hcCCHHHHHHHHHHHHhccCCChhhhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhh
Q 002477 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEW--AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (917)
Q Consensus 435 ~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~--a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (917)
..+++..|...++.+....-...+.-..+.+.+ +.+.++.+..+.++..++++...... ....++ . .+
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~-----~q~~~~----~-~~ 220 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS-----LQLDPS----V-HI 220 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh-----cccCCC----C-Cc
Confidence 348999999999998876532222222333333 33445677788888888887532110 000000 0 22
Q ss_pred ccHHHHHHHHHHHH--HcCCHHHHHHHH---HHHHhccCCC--------------------------HH-----------
Q 002477 513 KSLRLWTFYVDLEE--SLGNLESTRAVY---ERILDLRIAT--------------------------PQ----------- 550 (917)
Q Consensus 513 ~~~~~w~~~~~l~~--~~g~~~~A~~~y---~~al~~~p~~--------------------------~~----------- 550 (917)
+...+|....++.. ..|++..+.... ++.++..-.. +.
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~ 300 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY 300 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence 46778888888654 346655554443 3333221111 10
Q ss_pred --HHHHHHHHHHHccCHHHHHHHHHHHhhccCC-----C---C-h------HHHHHHHHHHHH------HHhCCCChHHH
Q 002477 551 --IIINYALLLEEHKYFEDAFRVYERGVKIFKY-----P---H-V------KDIWVTYLSKFV------KRYGKTKLERA 607 (917)
Q Consensus 551 --~~~~~a~~~~~~g~~e~A~~~~eral~~f~~-----P---~-~------~~lw~~yl~~~~------~~~~~~~~e~A 607 (917)
++.-=+......|..++|.+.+++|++.... | . + ...|..++.... .....+++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 0111122333445555777777777765211 1 1 0 123443332211 12245678888
Q ss_pred HHHHHHHHHhC---Cc----CCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002477 608 RELFENAVETA---PA----DAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (917)
Q Consensus 608 r~lfe~al~~~---p~----~~~~~l~~~~a~~e~~~g~~~~A~~~y~ 648 (917)
....+.+...+ |. ...+.+++..|.+....|+.+.|...|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 88888777653 22 1236678888888888999999999998
No 330
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.93 E-value=98 Score=34.48 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=94.6
Q ss_pred hHHhhCCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 376 VLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 376 ~~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
-++..||.-+..|.-+-..+......+ ..+| .+++.-++.-..+.+.+++++|+
T Consensus 54 ~ll~~npe~~t~wN~Rr~~~~~r~~~~---------~~~~-----------------~ek~~~ld~eL~~~~~~L~~npk 107 (421)
T KOG0529|consen 54 ELLEKNPEFYTVWNYRRLIIEERLTRA---------QLEP-----------------LEKQALLDEELKYVESALKVNPK 107 (421)
T ss_pred HHHhhCchhhhhhhhHHHHHHHhhhhh---------cCCH-----------------HHHHHhhHHHHHHHHHHHHhCch
Confidence 367789999999977644443221100 1122 11111344455666777788887
Q ss_pred ChhhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcC----
Q 002477 456 TVDHLASIWCEWAEMELRHK--NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG---- 529 (917)
Q Consensus 456 ~~~~l~~~w~~~a~~e~~~~--~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g---- 529 (917)
+. .+|........+++ ++..=+++..++++..+ ++-..|...--+.....
T Consensus 108 sY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~--------------------RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 108 SY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDP--------------------RNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred hH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCc--------------------ccccchHHHHHHHHHHhcccc
Confidence 77 77777777766554 35667777777777655 35566643322222221
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH------ccC---HHHHHHHHHHHhhc-cCCCChHHHHHHH
Q 002477 530 NLESTRAVYERILDLRIATPQIIINYALLLEE------HKY---FEDAFRVYERGVKI-FKYPHVKDIWVTY 591 (917)
Q Consensus 530 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~------~g~---~e~A~~~~eral~~-f~~P~~~~lw~~y 591 (917)
...+=.....++|.-++.+-.+|.....++.. .|. .+.-.+-++..... |.+|.+...|..+
T Consensus 164 ~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 12334456677777777777788777666652 231 22333334444433 5788888888744
No 331
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.38 E-value=38 Score=28.12 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=29.6
Q ss_pred HHHccCHHHHHHHHHHHhhcc----CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 559 LEEHKYFEDAFRVYERGVKIF----KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 559 ~~~~g~~e~A~~~~eral~~f----~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
....|++++|+..|..||..| +...+...-..+-.++..+ +++|..++..-+.
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eY-----l~RAE~i~~~~l~ 72 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEY-----LKRAEEILRLHLS 72 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-----HHHHHHHHHHhcc
Confidence 345588889999998888864 1222322222222222221 5677777665543
No 332
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.17 E-value=1.1e+02 Score=29.63 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 428 ~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
.....-...++.+++..++...--..|..+ .+-..-+.+.++.|++.+|+.+|+.+....+
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~----e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFP----ELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 333444556788888888888777888887 7777778888888999999999988776544
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.84 E-value=1.3e+02 Score=30.33 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
.++..|. +. +-+.|++.|-++-..|. -..+.+-..++.++. ..+.++|+.+|-++
T Consensus 112 llYy~Ws----r~-~d~~A~~~fL~~E~~~~-------------------l~t~elq~aLAtyY~-krD~~Kt~~ll~~~ 166 (203)
T PF11207_consen 112 LLYYHWS----RF-GDQEALRRFLQLEGTPE-------------------LETAELQYALATYYT-KRDPEKTIQLLLRA 166 (203)
T ss_pred HHHHHhh----cc-CcHHHHHHHHHHcCCCC-------------------CCCHHHHHHHHHHHH-ccCHHHHHHHHHHH
Confidence 4555553 22 34667766666554433 135677777777765 45788888888888
Q ss_pred HhccCC----CHHHHHHHHHHHHHccCHHHHH
Q 002477 542 LDLRIA----TPQIIINYALLLEEHKYFEDAF 569 (917)
Q Consensus 542 l~~~p~----~~~~~~~~a~~~~~~g~~e~A~ 569 (917)
+++... +|.++..+|.++...|+++.|.
T Consensus 167 L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 167 LELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 887433 4788888888888888887764
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.79 E-value=26 Score=32.56 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHH-hCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 002477 602 TKLERARELFENAVE-TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669 (917)
Q Consensus 602 ~~~e~Ar~lfe~al~-~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~ 669 (917)
.+..+...+++..++ ..|.. ..+-.+.++--..+.|++++++.+.+..++..|++++......+|..
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~-rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPER-RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred HHHHHhHHHHHHHhhhcCccc-chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 456667777777776 33432 22333333444556788888888888888888887766555555543
No 335
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.13 E-value=2.3e+02 Score=32.90 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
+.....+..|..+...|+.+.|...++.++...-+.+.. -.+...+-...-..++.+|-..+......+.
T Consensus 265 ~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~--l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 265 KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKS--LMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 444445677888888888888888888887632222211 1222223233334467777777777766543
No 336
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=69.12 E-value=6.7 Score=25.54 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhhh
Q 002477 251 LWTSLADYYIRRELFEKARDIFEEGMM 277 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~al~ 277 (917)
.|+.+.+.|.+.|++++|..+|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 478889999999999999999999875
No 337
>PF12854 PPR_1: PPR repeat
Probab=69.01 E-value=11 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDK 448 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~ 448 (917)
+...|..+...|.+.|++++|..+|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556777777888888888888888775
No 338
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.95 E-value=40 Score=28.02 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 531 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
+++|+.+..++++ .-..|++++|+.+|..++..|
T Consensus 3 l~kai~Lv~~A~~---------------eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFD---------------EDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHH---------------hhHhhhHHHHHHHHHHHHHHH
Confidence 4556666666655 345788999999999999876
No 339
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.30 E-value=1.8e+02 Score=31.07 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=9.0
Q ss_pred ChHHHHHHHHHHHHhC
Q 002477 603 KLERARELFENAVETA 618 (917)
Q Consensus 603 ~~e~Ar~lfe~al~~~ 618 (917)
++++|...|.++-+..
T Consensus 206 d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 206 DLKKAFRWYKKAAEQG 221 (292)
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4556666666665543
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.84 E-value=1.5e+02 Score=34.03 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=92.0
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhc
Q 002477 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (917)
Q Consensus 434 ~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (917)
.-+|+++.+..+.+..--+ |.-+ .......+.+..++|.++.|+++-..
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D--------------------------- 320 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIP---KDQGQSIARFLEKKGYPELALQFVTD--------------------------- 320 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------------------------
T ss_pred HHcCChhhhhhhhhhhhhc-ccCC---hhHHHHHHHHHHHCCCHHHHHhhcCC---------------------------
Confidence 3478888877777522211 2111 15577788888999999988875432
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~ 593 (917)
+. ...++..++|+++.|.++-+ ..+++..|..+|.....+|+++-|...|+++-.. ..+...|.
T Consensus 321 -~~---~rFeLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~------~~L~lLy~- 384 (443)
T PF04053_consen 321 -PD---HRFELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF------SGLLLLYS- 384 (443)
T ss_dssp -HH---HHHHHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H------HHHHHHHH-
T ss_pred -hH---HHhHHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc------cccHHHHH-
Confidence 11 23455678899888876533 2457899999999999999999999999997542 22222222
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002477 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (917)
Q Consensus 594 ~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~a 650 (917)
..|+.+..+.+-+.|....-. .+-+. . ..-.|+.++..+++.++
T Consensus 385 ------~~g~~~~L~kl~~~a~~~~~~----n~af~--~-~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 385 ------STGDREKLSKLAKIAEERGDI----NIAFQ--A-ALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HCT-HHHHHHHHHHHHHTT-H----HHHHH--H-HHHHT-HHHHHHHHHHT
T ss_pred ------HhCCHHHHHHHHHHHHHccCH----HHHHH--H-HHHcCCHHHHHHHHHHc
Confidence 246678888888877654322 11111 1 12357777777777643
No 341
>PF12854 PPR_1: PPR repeat
Probab=66.73 E-value=10 Score=25.97 Aligned_cols=28 Identities=7% Similarity=0.234 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
+.-.|..+++.+.+.|++++|.++|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5667777777777777777777777654
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=74 Score=33.50 Aligned_cols=211 Identities=13% Similarity=0.108 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----cCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhc
Q 002477 427 VAFAKLYETYKDIANARVIFDKAVQV----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (917)
Q Consensus 427 ~~~a~~~~~~g~~~~A~~i~e~al~~----~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~ 502 (917)
..+|.-..+.+++++|...|.+.|.. +-....+-......+..++.+.|.+..-.+........-.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~---------- 76 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAME---------- 76 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHH----------
Confidence 44555556677888888888887754 2222222335566677777777776655544433221000
Q ss_pred CCchhhhhhhccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhccCCCHH------HHHHHHHHHHHccCHHHHHHHHHHH
Q 002477 503 GNEPVQMKLHKSLRLWTFYVDL-EESLGNLESTRAVYERILDLRIATPQ------IIINYALLLEEHKYFEDAFRVYERG 575 (917)
Q Consensus 503 ~~~~~~~~~~~~~~~w~~~~~l-~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~g~~e~A~~~~era 575 (917)
+-.-|+..++...+++. ......++..+.+....++.-...-. .-..++.++...|.+.+|+....-.
T Consensus 77 -----~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 77 -----DFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred -----HhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 00011233333333332 22234566667777776665332222 2345677888999999999888777
Q ss_pred hhccCC----CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----hCCcCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 002477 576 VKIFKY----PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE-----TAPADAVKPLYLQYAKLEEDYGLAKRAMKV 646 (917)
Q Consensus 576 l~~f~~----P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~-----~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~ 646 (917)
+.-++. |.-.++.. |-++... ...+..+++.-+..|-. .||+.....+=+.-|-+...-.++.-|-.+
T Consensus 152 l~ElKk~DDK~~Li~vhl-lESKvyh--~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SY 228 (421)
T COG5159 152 LHELKKYDDKINLITVHL-LESKVYH--EIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSY 228 (421)
T ss_pred HHHHHhhcCccceeehhh-hhHHHHH--HHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHH
Confidence 654421 22222221 1122221 12234555555544432 377743334444445555556688888888
Q ss_pred HHHHHhhCC
Q 002477 647 YDQATKAVP 655 (917)
Q Consensus 647 y~~al~~~p 655 (917)
|-.+++-..
T Consensus 229 F~Ea~Egft 237 (421)
T COG5159 229 FIEALEGFT 237 (421)
T ss_pred HHHHHhccc
Confidence 888887543
No 343
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.35 E-value=31 Score=29.98 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHHHHhCCcCC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 600 GKTKLERARELFENAVETAPADA-------VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~-------~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
..+++..|.+.+.+.++...... .....+.+|.+....|..++|+..++.|++....
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45678888777777776544321 1345667788888889999999999988876543
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.99 E-value=7.6 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYE 573 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~e 573 (917)
.+.+.+|..+...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355667777777777777776665
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.95 E-value=2e+02 Score=31.04 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=103.8
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhh--hhcCCc-hhhh
Q 002477 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV--AADGNE-PVQM 509 (917)
Q Consensus 433 ~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~--~~~~~~-~~~~ 509 (917)
.++..+...-++.-..||+++|... ..+..+|+-+. ..+.+|.+++++|++.......+-. .+.+.. ..+-
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA----~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECA----TAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhh----hHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 3444444444555566788887776 77777776553 3478888999988865331111000 111111 1111
Q ss_pred hhhccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 510 KLHKSLRLWT--FYVDLEESLGNLESTRAVYERILDLRIATP--QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 510 ~~~~~~~~w~--~~~~l~~~~g~~~~A~~~y~~al~~~p~~~--~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
+-..+..++. .++-+-.++|+..+|.+.|....+-.|-.. .+.-|+...+.+..-+.+...++-+-=.+ .-|.+.
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA 346 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSA 346 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchH
Confidence 1112233332 234456778888888888888887666332 34556666666665555555555444333 245554
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 586 ~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
.+- |-..+. ++|.+-++- .|+ ...-.-+...+ -.|++...||++.+|.-++.
T Consensus 347 ~ic--YTaALL---------K~RAVa~kF---spd---~asrRGLS~AE------~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 347 AIC--YTAALL---------KTRAVSEKF---SPE---TASRRGLSTAE------INAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHH--HHHHHH---------HHHHHHhhc---Cch---hhhhccccHHH------HHHHHHHHHHhhcCCCCcHH
Confidence 332 222222 233333322 232 11111111222 25788889999999986654
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.87 E-value=30 Score=40.32 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=74.2
Q ss_pred HHHHHHHHHHc-CCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHH
Q 002477 386 EQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIW 464 (917)
Q Consensus 386 ~~w~~~~~l~~-~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w 464 (917)
-.|......++ .++..+++.|...++.+........+..+.-.++-+|....+++.|.++++.|=+++|.++ -.-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~----l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP----LCQ 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH----HHH
Confidence 46777777775 6788899999998876544222234567778889999999999999999999999999887 322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 465 CEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 465 ~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
..........++-++|+.+.......
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 22333345567888888888776543
No 347
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.16 E-value=37 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHH
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIII 553 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 553 (917)
.+.+.|++++|+...+.+++..|++.++..
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345667777777777777777776666543
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.16 E-value=9.4 Score=24.23 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHH
Q 002477 251 LWTSLADYYIRRELFEKARDIFEE 274 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~ 274 (917)
....||..+..+|++++|+.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 467789999999999999998864
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.73 E-value=59 Score=36.55 Aligned_cols=133 Identities=12% Similarity=0.114 Sum_probs=87.9
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhc
Q 002477 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (917)
Q Consensus 434 ~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (917)
+..|++-.|-.-...+|...|..| ..-...+.+....|.|+.+...+..+-.... .
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p----~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--------------------s 355 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDP----VLIQLRSVIFSHLGYYEQAYQDISDVEKIIG--------------------T 355 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhhhHHHHHHHhhchhhhhc--------------------C
Confidence 346888888777777888777777 6666677788888999999888755433211 0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
..+.-.....-...+|+.+.|...-+-++.-.+.+|.+..--|---...|.+++|.-...+.+.+ .|....-|..++
T Consensus 356 ~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~--~~~~~~g~v~~~ 432 (831)
T PRK15180 356 TDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL--NPETQSGWVNFL 432 (831)
T ss_pred CchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc--CChhcccceeee
Confidence 11222223333445677888888878788777778877655555556677888888888888877 444333454444
No 350
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.40 E-value=2.2e+02 Score=30.99 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHH
Q 002477 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610 (917)
Q Consensus 531 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~l 610 (917)
-++++.+=.-...+.|..|.+.-..+.++........=+..=-..|-+ ..++..+|+.-+ ..++..+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL--~dQDr~lW~r~l-----------I~eg~al 278 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLL--EDQDRSLWDRAL-----------IDEGLAL 278 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeec--cccchhhhhHHH-----------HHHHHHH
Confidence 356666666777888999998777777665433221111100011111 234456787532 4667788
Q ss_pred HHHHHHhC-CcCCcHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHH
Q 002477 611 FENAVETA-PADAVKPLYLQYAKLEED-----YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYE 684 (917)
Q Consensus 611 fe~al~~~-p~~~~~~l~~~~a~~e~~-----~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye 684 (917)
..+++... |. -..+--..+-+.-. .-++.....+|.-.....|+ +.+.+...... ....|...+..+.+
T Consensus 279 l~rA~~~~~pG--PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAl--a~~~Gp~agLa~ve 353 (415)
T COG4941 279 LDRALASRRPG--PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVAL--AMREGPAAGLAMVE 353 (415)
T ss_pred HHHHHHcCCCC--hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHH--HHhhhHHhHHHHHH
Confidence 88887653 33 11222222222221 33566677777766666664 55555443332 34567778888877
Q ss_pred HHHHh-CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 685 QAIES-GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 685 ~al~~-~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
..... .+.++. .++-.-+.+..++|..++|++-|++|+.+
T Consensus 354 ~L~~~~~L~gy~--~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 354 ALLARPRLDGYH--LYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred Hhhccccccccc--ccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 76654 233333 56777789999999999999999999998
No 351
>PF13041 PPR_2: PPR repeat family
Probab=64.23 E-value=34 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 551 IIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 551 ~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.|..+...+.+.|++++|+++|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444445555555555555555555543
No 352
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.94 E-value=2.1e+02 Score=30.59 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHH---hC
Q 002477 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEE----HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR---YG 600 (917)
Q Consensus 528 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~---~~ 600 (917)
..+...|..+|..+.+ ...+....++|.++.. ..+..+|...|+++...- ++.....-......+..- .+
T Consensus 90 ~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-NVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHcChhhhc
Confidence 3468889999996665 4678899999999987 348999999999999962 333200011111111100 00
Q ss_pred -CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCC
Q 002477 601 -KTKLERARELFENAVETAPADAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVP 655 (917)
Q Consensus 601 -~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~----~g~~~~A~~~y~~al~~~p 655 (917)
..+...|+..|.++-... +......++.++.. ..+..+|...|.++.+...
T Consensus 167 ~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 012346777777776654 23455556655543 2266677777777766544
No 353
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.11 E-value=4.1e+02 Score=33.89 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCc--HHH
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV--KPL 626 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~--~~l 626 (917)
+.....+|..|...|..-+|+..|.+|..-|. . |+ .+..+....+...+.- .+. ..|.... ..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~g---e---~~-aL~~lv~~~~p~~~sv-----~dG--~t~s~e~t~lhY 985 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFG---E---GN-ALRKLVYFLLPKRFSV-----ADG--KTPSEELTALHY 985 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccc---c---HH-HHHHHHHHhcCCCCch-----hcC--CCCCchHHHHHH
Confidence 34455667778888899999999999988532 1 33 2333332211100000 000 0111101 234
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC-hH-HHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHH-H
Q 002477 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE-KL-GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLK-Y 703 (917)
Q Consensus 627 ~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~-~~-~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~-~ 703 (917)
|..-.++.+++|..+.+.++-..|++..|++. .. .++.........+|.+ -+.|+..+. .|+......|++ +
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~---~qAy~ai~~--npdserrrdcLRql 1060 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHW---FQAYKAILR--NPDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhH---HHHHHHHHc--CCcHHHHHHHHHHH
Confidence 56667788889999999999999999887653 33 2333333322233333 334444443 688776666664 4
Q ss_pred HHHHHHcCC------------hhHHHH-HHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 002477 704 AELEKSLGE------------IDRARG-IYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFR-EMLR 757 (917)
Q Consensus 704 a~le~~~g~------------~~~Ar~-i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~-~~lr 757 (917)
.-+....|+ .++--. +++.+... .|...+..++.+..|++.-+|...|- -|+.
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 444555554 334445 77777766 66657789999999999999976654 4443
No 354
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=62.90 E-value=1.3e+02 Score=28.65 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=68.5
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhH
Q 002477 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR 715 (917)
Q Consensus 636 ~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~ 715 (917)
..++...+..++...--..|+.+.+.++.+++. ...|.+.+|..++....+. .+.. -.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~-~~~~-------------------p~ 79 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSS-AGAP-------------------PY 79 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhcc-CCCc-------------------hH
Confidence 377888888888888888899888999999988 5778999999998887665 3322 23
Q ss_pred HHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002477 716 ARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (917)
Q Consensus 716 Ar~i~~~a~~~-~~P~~~~~~w~~~~~fe~~~G~~~~a~~~l 756 (917)
+++++..|+.. .|| -|+.+..--...|...+++.+.
T Consensus 80 ~kAL~A~CL~al~Dp-----~Wr~~A~~~le~~~~~~a~~Lv 116 (153)
T TIGR02561 80 GKALLALCLNAKGDA-----EWHVHADEVLARDADADAVALV 116 (153)
T ss_pred HHHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCHhHHHHH
Confidence 34455555544 255 4888888877777777766655
No 355
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=62.12 E-value=13 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhhhc
Q 002477 251 LWTSLADYYIRRELFEKARDIFEEGMMT 278 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~al~~ 278 (917)
.|+.+...|.+.|++++|..+|.+....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4788889999999999999999998764
No 356
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=61.44 E-value=1.4e+02 Score=27.80 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=32.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002477 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (917)
Q Consensus 432 ~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~ 485 (917)
.+...+.......+++.+++.++.++ .+...++.++.+. +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~----~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENP----ALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccch----hHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34455677777888888887766555 6777777777655 3445555555
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.61 E-value=24 Score=24.60 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhccCC
Q 002477 424 TLWVAFAKLYETYKDIANARVI--FDKAVQVNYK 455 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i--~e~al~~~~~ 455 (917)
+-|..+|-.+-.+|++++|+.+ |.-+...++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4578888888888999999988 4466555543
No 358
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=59.24 E-value=2.7e+02 Score=30.37 Aligned_cols=274 Identities=14% Similarity=0.106 Sum_probs=142.3
Q ss_pred hcCCHHHHHHHHHHHHhc--cCCC----hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhh
Q 002477 435 TYKDIANARVIFDKAVQV--NYKT----VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (917)
Q Consensus 435 ~~g~~~~A~~i~e~al~~--~~~~----~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~ 508 (917)
..++.+++..+|...+.. .+.+ +..-+..-..+++++.+.|+.+.-+.+.......-.. -+
T Consensus 16 ~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~--------v~----- 82 (411)
T KOG1463|consen 16 SVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSS--------VS----- 82 (411)
T ss_pred ccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--------hh-----
Confidence 344556677777776652 1111 1223456667777788888777777766554321000 00
Q ss_pred hhhhccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHhhccCC
Q 002477 509 MKLHKSLRLWTFYVDLEESL-GNLESTRAVYERILDLRIATPQ------IIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (917)
Q Consensus 509 ~~~~~~~~~w~~~~~l~~~~-g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~g~~e~A~~~~eral~~f~~ 581 (917)
-++..++-..+++..... +..+.-+.++..+++.-...-. .-..++.+|...+.|.+|+......++-++.
T Consensus 83 --KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK 160 (411)
T KOG1463|consen 83 --KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK 160 (411)
T ss_pred --hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 012234444444433222 3444555666666655322222 2245788899999999999888777765432
Q ss_pred CCh----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-----CCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002477 582 PHV----KDIWVTYLSKFVKRYGKTKLERARELFENAVET-----APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (917)
Q Consensus 582 P~~----~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~-----~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~ 652 (917)
-++ .++.. +=++.. +..+++.+|+..+..|-.. ||+.....+=+.-|-+...-.++.-|..+|-.|++
T Consensus 161 lDDK~lLvev~l-lESK~y--~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 161 LDDKILLVEVHL-LESKAY--HALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred cccccceeeehh-hhhHHH--HHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 211 11111 111211 2345688999988887654 67643344444555555555788999999998887
Q ss_pred hCCC---CChHHHHHHHHHHH-HHhcCcchHHHHHH--HHHHhCCCCchHHHHHHHHHHHH--HHcCChhHHHHHHHHHH
Q 002477 653 AVPN---HEKLGMYEIYIARA-AEIFGVPKTREIYE--QAIESGLPDKDVKAMCLKYAELE--KSLGEIDRARGIYVFAS 724 (917)
Q Consensus 653 ~~p~---~~~~~l~~~~i~~~-~~~~~~~~ar~~ye--~al~~~~p~~~~~~~~l~~a~le--~~~g~~~~Ar~i~~~a~ 724 (917)
-... +.+...-..|.... .-.+..++.-.+.. .+++. .+... .+....|... +++.+++.|..-|..-+
T Consensus 238 gf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--~g~~i-~AmkavAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 238 GFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--AGRDI-DAMKAVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--cCcch-HHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 6432 12222222222211 12233333333222 23332 11121 2334444433 24566888888888777
Q ss_pred ccCCCC
Q 002477 725 QFADPR 730 (917)
Q Consensus 725 ~~~~P~ 730 (917)
.. ||-
T Consensus 315 ~~-D~i 319 (411)
T KOG1463|consen 315 AE-DPI 319 (411)
T ss_pred hc-ChH
Confidence 66 663
No 359
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.21 E-value=27 Score=30.39 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=41.7
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCh-----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 434 ETYKDIANARVIFDKAVQVNYKTV-----DHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 434 ~~~g~~~~A~~i~e~al~~~~~~~-----~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
.+.|++..|...+.+.+.....+. ..+....+..|.+....|++++|+..++.++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888888766666654322221 133466777899999999999999999999975
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.10 E-value=4.7e+02 Score=32.77 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhHhhhcccchhhhhhHHH
Q 002477 698 AMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYL 777 (917)
Q Consensus 698 ~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~~~~~~~~~~~~~~~~~ 777 (917)
.+|..-+-+..++|+.+.|..+|-+-+. |+. -...+..+ .++-.-|+.+-+..+|++.-+-...|.-+-....+++
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~--d~~-~A~~Yc~~-~y~~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l 760 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELD--DID-AAESYCLP-QYESDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFL 760 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhc--chh-HHHHHHHH-hccCCCcccHHHHHHHHHHhcchhhccccchhhhhHH
Confidence 4677777788889999999999999986 343 11222221 1112234566666677544433333544444444454
Q ss_pred HhhhhhhchhHhhhHhhhc
Q 002477 778 MQKDQRLSIDDAKDKLKQA 796 (917)
Q Consensus 778 ~~~~~~~~~~~a~~~~~~~ 796 (917)
..-..+.|..++-+.+...
T Consensus 761 ~~h~~r~d~~~~~~~Lp~~ 779 (877)
T KOG2063|consen 761 QKHADRLDLAQVLKLLPDD 779 (877)
T ss_pred HhhhhhcCHHHHHHhCCcc
Confidence 4444445555555544433
No 361
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=56.40 E-value=46 Score=36.20 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHHHHhCCcC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 601 KTKLERARELFENAVETAPAD-AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~-~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
+-..++++.+++..|...|.. .....|+.+|+++...|.++..+.+|+.|+.....
T Consensus 116 Gcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 335678888888888888873 23568999999999999999999999999987665
No 362
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.85 E-value=18 Score=23.39 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002477 518 WTFYVDLEESLGNLESTRAVYERILDL 544 (917)
Q Consensus 518 w~~~~~l~~~~g~~~~A~~~y~~al~~ 544 (917)
|..+++.+.+.|++++|..+|+++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 555666666667777777777766653
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.53 E-value=17 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 701 LKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 701 l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
+.+|..+...|+.+.||.+++..+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56788899999999999999999854
No 364
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.08 E-value=4.8e+02 Score=32.03 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002477 515 LRLWTFYVDLEESLGNLESTRAVYERILDL 544 (917)
Q Consensus 515 ~~~w~~~~~l~~~~g~~~~A~~~y~~al~~ 544 (917)
..+...|++.+...|+++.|...|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 467788999999999999999999998864
No 365
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=54.50 E-value=40 Score=36.66 Aligned_cols=69 Identities=16% Similarity=0.391 Sum_probs=52.0
Q ss_pred cCCc-hHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHH
Q 002477 396 EGNP-TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (917)
Q Consensus 396 ~~~~-~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~ 470 (917)
+|.+ +++..++...|+.|.. ..+....|+.+|.++...|.++..+.+|++|+.....-++ .+....+++
T Consensus 115 eGcp~eei~~~L~~li~~IP~---A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPie---ElR~~l~di 184 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKNIPD---AKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIE---ELRHVLVDI 184 (353)
T ss_pred cCCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHH---HHHHHHHHH
Confidence 4555 4677889988887643 2467899999999999999999999999999987655443 444444444
No 366
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.91 E-value=2.1e+02 Score=27.39 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 436 ~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
.++++++..+++..--..|+.+ .+-..-+-+.+..|++.+|+.+|+....-.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~----e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLK----ELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCcc----ccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 7888999999988777788887 7777777788899999999999999876543
No 367
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.53 E-value=2.7e+02 Score=28.99 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 002477 427 VAFAKLYETYKDIANARVIFDKAVQVNY 454 (917)
Q Consensus 427 ~~~a~~~~~~g~~~~A~~i~e~al~~~~ 454 (917)
+.+|++..+.|.++++...+.+++..++
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3455566666666666666666665543
No 368
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.36 E-value=5.5e+02 Score=31.84 Aligned_cols=303 Identities=16% Similarity=0.064 Sum_probs=165.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhh
Q 002477 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (917)
Q Consensus 421 ~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~ 500 (917)
....+...-+.++..+|...+|+.. |+... ++.-.+++....+.-....++.. ++.+.+..-|..
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~h---AlaA~--d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~------ 409 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDH---ALAAG--DPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAE------ 409 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHH---HHhCC--CHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHH------
Confidence 3457777777888888888777654 33321 12112233333322222333322 222233222211
Q ss_pred hcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CH-----H-HHHH-HHHHHHHccCHHHHHHH
Q 002477 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--TP-----Q-IIIN-YALLLEEHKYFEDAFRV 571 (917)
Q Consensus 501 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~--~~-----~-~~~~-~a~~~~~~g~~e~A~~~ 571 (917)
.+-.++.+-..++-...+..++++|..+..++-..-+. .+ . -|.. .|.+....|+++.|.++
T Consensus 410 ---------~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 410 ---------LLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred ---------HHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 12246677778888888889999999998888766443 11 1 1222 46777788999999999
Q ss_pred HHHHhhccCCCChHH-----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcHHHHHHH--HHHHHHhCCHHH
Q 002477 572 YERGVKIFKYPHVKD-----IWVTYLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQY--AKLEEDYGLAKR 642 (917)
Q Consensus 572 ~eral~~f~~P~~~~-----lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~--~~~~l~~~~--a~~e~~~g~~~~ 642 (917)
.+.++.. -|.... .........+ -.|++++|+.+..++.+..-.. ....+|..+ +.+...+|....
T Consensus 481 ar~al~~--L~~~~~~~r~~~~sv~~~a~~---~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 481 ARLALVQ--LPEAAYRSRIVALSVLGEAAH---IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred HHHHHHh--cccccchhhhhhhhhhhHHHH---HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999986 343311 1111111122 3478999999999887763221 123445444 455667884444
Q ss_pred HHHH--HH----HHHhhCCCCChHHHHHHHHHHHH----HhcCcchHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHHcC
Q 002477 643 AMKV--YD----QATKAVPNHEKLGMYEIYIARAA----EIFGVPKTREIYEQAIESGLPDKDVKAM-CLKYAELEKSLG 711 (917)
Q Consensus 643 A~~~--y~----~al~~~p~~~~~~l~~~~i~~~~----~~~~~~~ar~~ye~al~~~~p~~~~~~~-~l~~a~le~~~g 711 (917)
|... |. +-+...|.+.. ...+++.... -.+...+++.-++-.... .|.....-+ ...+|.++.-.|
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~f--~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHEF--LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccchh--HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcC
Confidence 4332 22 22222333221 1222222111 123445566666665555 554442211 236788999999
Q ss_pred ChhHHHHHHHHHHccC-CCCCCHHHHHHHH---HH--HHHcCCHHHHHHHH
Q 002477 712 EIDRARGIYVFASQFA-DPRSDTEFWNRWH---EF--EVNHGNEDTFREML 756 (917)
Q Consensus 712 ~~~~Ar~i~~~a~~~~-~P~~~~~~w~~~~---~f--e~~~G~~~~a~~~l 756 (917)
+.++|........... .+. ...+|...+ .+ =...||.+.+.+.+
T Consensus 633 dl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 9999999888776552 222 223444322 22 23468888887777
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.09 E-value=46 Score=35.21 Aligned_cols=62 Identities=11% Similarity=-0.052 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~a 487 (917)
...+....+.+|...|.+.+|.++.+++++++|-+. ..|..+...+...|+--.|.+-|++.
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e----~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE----QDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh----HHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345667778899999999999999999999999988 89999999988888877777666664
No 370
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.74 E-value=4.5e+02 Score=30.62 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 002477 427 VAFAKLYETYKDIA--NARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (917)
Q Consensus 427 ~~~a~~~~~~g~~~--~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~ 489 (917)
..+..++...+..+ ...+.+....+..|++. ...+..+.++...|+.+.|+.+++.++.
T Consensus 235 ~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga----~wll~~ar~l~~~g~~eaa~~~~~~~v~ 295 (546)
T KOG3783|consen 235 YQFISFVLGTPNPDGEECEKALKKYRKRYPKGA----LWLLMEARILSIKGNSEAAIDMESLSIP 295 (546)
T ss_pred HHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCc----cHHHHHHHHHHHcccHHHHHHHHHhccc
Confidence 34444444444333 33344444445567665 6667788888888888888888887776
No 371
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=51.34 E-value=6.4e+02 Score=32.35 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHH
Q 002477 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (917)
Q Consensus 399 ~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~ 478 (917)
++.-+.-|+.|+..+.-. + ...|-..-++-.++|-+..|..+|.-..+. -..++..||+...+...++
T Consensus 889 ID~~L~ry~~AL~hLs~~---~--~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~-------~k~i~~~ya~hL~~~~~~~ 956 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSEC---G--ETYFPECKNYIKKHGLYDEALALYKPDSEK-------QKVIYEAYADHLREELMSD 956 (1265)
T ss_pred HHHHHHHHHHHHHHHHHc---C--ccccHHHHHHHHhcccchhhhheeccCHHH-------HHHHHHHHHHHHHHhcccc
Confidence 345566677777654321 1 234555555566777777777666443322 2277888888888888888
Q ss_pred HHHHHHHHHHcC
Q 002477 479 GALELMRRATAE 490 (917)
Q Consensus 479 ~A~~~l~~al~~ 490 (917)
+|.-.|+++-+.
T Consensus 957 ~Aal~Ye~~Gkl 968 (1265)
T KOG1920|consen 957 EAALMYERCGKL 968 (1265)
T ss_pred HHHHHHHHhccH
Confidence 888877776543
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.15 E-value=80 Score=35.61 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=82.1
Q ss_pred cCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHH
Q 002477 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607 (917)
Q Consensus 528 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~A 607 (917)
.|++-.|-.-...++...|..|......+.+.+..|+++.|.+...-+-.+....+.. ....+... .+.+....|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~--~~~~~r~~---~~l~r~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST--LRCRLRSL---HGLARWREA 376 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH--HHHHHHhh---hchhhHHHH
Confidence 4777777777777888889999999999999999999999988876554432222221 11111111 255566777
Q ss_pred HHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 608 r~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
..+-+-.+...-. .+++..--+---.+.|.+++|...+++.+..+|+.+
T Consensus 377 ~s~a~~~l~~eie--~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIE--DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccC--ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 7766666654333 344444444444567888888888888888887643
No 373
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=50.66 E-value=1.8e+02 Score=33.94 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHH--HHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHH
Q 002477 532 ESTRAVYERILDLRIATPQIIINY--ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609 (917)
Q Consensus 532 ~~A~~~y~~al~~~p~~~~~~~~~--a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~ 609 (917)
..+...+...+..++.+|.+.+.. ...+...+....++-....++.. +|........++..++ + .+..+.-+.+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~L~~ale-~-~~~~~~~~~~ 123 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV--NPENCPAVQNLAAALE-L-DGLQFLALAD 123 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc--CcccchHHHHHHHHHH-H-hhhHHHHHHH
Confidence 335555555666666677664443 55555566666677777777764 6666555555443332 2 2233444444
Q ss_pred HHHHHHHhCCcCCcHHH------HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCCh
Q 002477 610 LFENAVETAPADAVKPL------YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l------~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~ 659 (917)
.-+-+....|. +..+ ++..+++....|...++....+++....|.++.
T Consensus 124 ~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 124 ISEIAEWLSPD--NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHhcCcc--hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 44556666665 2222 222466666677777777777777777777543
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.55 E-value=4.5e+02 Score=30.36 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC-----ChHHHHH
Q 002477 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP-----HVKDIWV 589 (917)
Q Consensus 515 ~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P-----~~~~lw~ 589 (917)
-..+...+.++... ..+.--.+++|+++.+.++...--.++..|+. ++.+.+...|.+++-.| -| ...++|.
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWe 175 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWE 175 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHH
Confidence 34444555555555 44556667777777777776666777777776 77777778888877765 23 1245666
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 002477 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA-KLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (917)
Q Consensus 590 ~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a-~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~ 668 (917)
.... + -+.+.+....+..+.-....... ..+.+... ..|....++.+|+.+....++.+.. ..|...-.+.
T Consensus 176 KL~~-~----i~dD~D~fl~l~~kiqt~lg~~~-~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k--~~~ar~~~i~ 247 (711)
T COG1747 176 KLPE-L----IGDDKDFFLRLQKKIQTKLGEGR-GSVLMQDVYKKYSENENWTEAIRILKHILEHDEK--DVWARKEIIE 247 (711)
T ss_pred HHHH-h----ccccHHHHHHHHHHHHHhhccch-HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch--hhhHHHHHHH
Confidence 5432 1 13456666666665554444321 22333332 4455677889999999888887654 3444444443
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.22 E-value=3.4e+02 Score=28.82 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=118.4
Q ss_pred HHHcCCHHHHHHHHHHHHhccCC--------CHHHHHHHHHHHHHccCHHHHH---HHHHHHhhccCCCChHHHHHHHHH
Q 002477 525 EESLGNLESTRAVYERILDLRIA--------TPQIIINYALLLEEHKYFEDAF---RVYERGVKIFKYPHVKDIWVTYLS 593 (917)
Q Consensus 525 ~~~~g~~~~A~~~y~~al~~~p~--------~~~~~~~~a~~~~~~g~~e~A~---~~~eral~~f~~P~~~~lw~~yl~ 593 (917)
....+++++|+..|.+++..... ......++..+|...|++..-. .....+..-|..|....+....+.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 34567899999999999987321 1347889999999988765433 333444554566777777766666
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCcCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CChH---HHHHH
Q 002477 594 KFVKRYGKTKLERARELFENAVETAPADAV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN-HEKL---GMYEI 665 (917)
Q Consensus 594 ~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~----~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~-~~~~---~l~~~ 665 (917)
+|.. ....++.-..+.+.+++....+.- ..+-..++-++.+.|.+..|+......+..... +++. .++..
T Consensus 93 kf~~--~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 93 KFPY--SSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred hcCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 5542 345688888888888876443211 123344566777899999999887666543211 1121 11111
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHh----CCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 666 YIARAAEIFGVPKTREIYEQAIES----GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 666 ~i~~~~~~~~~~~ar~~ye~al~~----~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
--..+.+..++.+++.-...|-.. .+|..-...+=+.=|-+...-.++.-|-.+|-.|.+-
T Consensus 171 ESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 112224556666666655554433 2443332222222233334445677888888887765
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.31 E-value=59 Score=34.43 Aligned_cols=60 Identities=17% Similarity=0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 518 w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
...-+..+...|.+.+|..+.++++.++|-+.+.|..+...+...|+--.+.+.|++.-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 333445566677777777777777777777777777777777777776666666665443
No 377
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=49.20 E-value=1.7e+02 Score=28.86 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH-Hh-CCCChHHHHHHHHHHHHhCCcCCc
Q 002477 547 ATPQIIINYALLLEE-HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK-RY-GKTKLERARELFENAVETAPADAV 623 (917)
Q Consensus 547 ~~~~~~~~~a~~~~~-~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~-~~-~~~~~e~Ar~lfe~al~~~p~~~~ 623 (917)
..|..-..++..++- .++|+.|.++|..-..-..+|.+-- .|...... .- ..+++..|..-|+.+-+.+.+
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCy---KyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~--- 105 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCY---KYGMYMLAGKGGDDASLSKAIRPMKIACDANIP--- 105 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHH---HhhhhhhcccCCCccCHHHHHHHHHHHhccCCH---
Confidence 356777777766653 5678888888877766544455421 12221111 00 124678888888888765433
Q ss_pred HHHHHHHHHHHHH-----hC--CHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchH
Q 002477 624 KPLYLQYAKLEED-----YG--LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV 696 (917)
Q Consensus 624 ~~l~~~~a~~e~~-----~g--~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~ 696 (917)
......+.+... .+ +..+|+..+.|++...-...=+.+-..| +++.+++ ... .|....
T Consensus 106 -~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~------~~g~~k~-------~t~-ap~~g~ 170 (248)
T KOG4014|consen 106 -QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMY------MGGKEKF-------KTN-APGEGK 170 (248)
T ss_pred -HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHH------hccchhh-------ccc-CCCCCC
Confidence 233333333321 22 3678888888888776543323222222 3444331 111 231111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 002477 697 KAMCLKYAELEKSLGEIDRARGIYVFASQFADP 729 (917)
Q Consensus 697 ~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P 729 (917)
+ +.-+.+..-+.+.+.|...--+|+++..|
T Consensus 171 p---~~~~~~~~~~kDMdka~qfa~kACel~~~ 200 (248)
T KOG4014|consen 171 P---LDRAELGSLSKDMDKALQFAIKACELDIP 200 (248)
T ss_pred C---cchhhhhhhhHhHHHHHHHHHHHHhcCCh
Confidence 0 11122333456778888887788777444
No 378
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=48.99 E-value=30 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhhh
Q 002477 251 LWTSLADYYIRRELFEKARDIFEEGMM 277 (917)
Q Consensus 251 lw~~la~~y~~~g~~e~A~~~~e~al~ 277 (917)
.|..+.+.+.+.|+++.|..+|++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578888999999999999999998776
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.81 E-value=1.1e+02 Score=28.64 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCc
Q 002477 624 KPLYLQYAKLEEDY---GLAKRAMKVYDQATK-AVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 624 ~~l~~~~a~~e~~~---g~~~~A~~~y~~al~-~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~ 694 (917)
...-++||+.+.+. .+..+.+.+++..++ ..|...+-.+|-.-+.. .+.+.+++++.....+++. .|++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~-yRlkeY~~s~~yvd~ll~~-e~~n 104 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGH-YRLKEYSKSLRYVDALLET-EPNN 104 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHH-HHHhhHHHHHHHHHHHHhh-CCCc
Confidence 45566677666553 344556666666665 33433332232222222 2445555555555555554 4443
No 380
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=48.67 E-value=39 Score=24.46 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhcccH
Q 002477 90 TFERALVTMHKMPRIWIMYLETLTSQKFI 118 (917)
Q Consensus 90 ~~eraL~~~p~~~~lw~~y~~~~~~~~~~ 118 (917)
.|.+|+...|.....|+.|+.++-++|+.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp 32 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDP 32 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCH
Confidence 45566666666666666666666666654
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.88 E-value=1.4e+02 Score=33.25 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~ 492 (917)
.....++.+|...|+++.|...|-++-.-. .+......+|..+..+-+-.+|+-+......+|.+.|.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 345678889999999999999999954322 22233458899999999999999999999999887753
No 382
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=47.76 E-value=2.1e+02 Score=25.77 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002477 606 RARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (917)
Q Consensus 606 ~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~ 653 (917)
-+.+.|.++....|. +....+.+|+-....-.++++...-++++..
T Consensus 62 ~sve~~s~a~~Lsp~--~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPD--SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChh--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 356677777777777 5555666665544444556666666666543
No 383
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=47.07 E-value=2.8e+02 Score=26.89 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCC
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~ 658 (917)
..++.+.+..++.-.--.-|. .+.+-+.-|.+....|++.+|+.+++......|..+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~--~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE--FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 456788888888877777887 677777788888888888888888888766655543
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.02 E-value=2.9e+02 Score=27.16 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=90.2
Q ss_pred HHHHHHHHH-cCCchHHHHHHHHHHhccCCCccCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChhhhHH
Q 002477 387 QWHRRVKIF-EGNPTKQILTYTEAVRTVDPMKAVGKPH-TLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLAS 462 (917)
Q Consensus 387 ~w~~~~~l~-~~~~~~a~~~y~~Ai~~i~p~~~~~~~~-~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~--~~~~l~~ 462 (917)
.++...++- ++..+++...|...-++- .+.++ -.-+..|.+..+.|+-..|...|..+-+..+. -..|++.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg-----~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTG-----YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcC-----CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 334444443 356778888888766542 22333 34577778888899999999999998765432 1123333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC-CChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002477 463 IWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (917)
Q Consensus 463 ~w~~~a~~e~~~~~~~~A~~~l~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~a 541 (917)
+. -+-+...+|.|+......+....- +|. ....--.++-.-.+.|++..|++.|.++
T Consensus 136 lr--aa~lLvD~gsy~dV~srvepLa~d~n~m--------------------R~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 136 LR--AAYLLVDNGSYDDVSSRVEPLAGDGNPM--------------------RHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HH--HHHHHhccccHHHHHHHhhhccCCCChh--------------------HHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 33 344566788888877655543321 220 1112223334445779999999999998
Q ss_pred HhccCCCHHHHHHHHHHHH
Q 002477 542 LDLRIATPQIIINYALLLE 560 (917)
Q Consensus 542 l~~~p~~~~~~~~~a~~~~ 560 (917)
.. +...|....+.+++..
T Consensus 194 a~-Da~aprnirqRAq~ml 211 (221)
T COG4649 194 AN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred Hc-cccCcHHHHHHHHHHH
Confidence 87 5667777777766544
No 385
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.97 E-value=23 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
.++..+|++-+..++|++|..-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56778888888888899998888888764
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.69 E-value=67 Score=32.13 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 002477 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 604 ~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~ 656 (917)
.+..++..++.+...|. +.++..++.++...|+.++|.....++....|.
T Consensus 127 l~~~~~~a~~~l~~~P~---~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD---PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 55666777778888886 789999999999999999999999999999994
No 387
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=44.64 E-value=2.2e+02 Score=36.01 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH
Q 002477 603 KLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (917)
Q Consensus 603 ~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~ 660 (917)
.+++|..-|++.- ..|. ++-=|+--|.+|.+.|++++-++.|.-|++..|.+|.+
T Consensus 534 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVG--APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHhc-CCCC--CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 3556666666543 2344 45567777888888888888888888888888887754
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.33 E-value=81 Score=31.54 Aligned_cols=50 Identities=32% Similarity=0.363 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC
Q 002477 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (917)
Q Consensus 530 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P 582 (917)
..+...+..++.+...| +|.++.+++..+..+|+.++|....+++..+ +|
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l--yP 175 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL--YP 175 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 34556677788888777 8899999999999999999999999999998 56
No 389
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.17 E-value=41 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
+++..+|.+-..+++|+.|..-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888875
No 390
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=44.12 E-value=6.2e+02 Score=32.19 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhccC----CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCH
Q 002477 565 FEDAFRVYERGVKIFK----YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (917)
Q Consensus 565 ~e~A~~~~eral~~f~----~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~ 640 (917)
......+.++++..+. +++...+.+.|+..+.. ..+..++++|......--......+|..|+.++++.+.+
T Consensus 55 ~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~----e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~ 130 (974)
T KOG1166|consen 55 QSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELR----EELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYF 130 (974)
T ss_pred hhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHH----HHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Confidence 5566667777776542 23344434444332221 247899999999887643333678999999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 002477 641 KRAMKVYDQATKAVPN 656 (917)
Q Consensus 641 ~~A~~~y~~al~~~p~ 656 (917)
.+|..+|+.+++....
T Consensus 131 keA~~v~q~Giq~~ae 146 (974)
T KOG1166|consen 131 KEAKEVFQLGIQNKAE 146 (974)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999987654
No 391
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=43.43 E-value=51 Score=23.88 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHH
Q 002477 609 ELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRA 643 (917)
Q Consensus 609 ~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A 643 (917)
..|.++|-..|. +...++.||..+..+|+..+|
T Consensus 3 ~all~AI~~~P~--ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPD--DDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCC--CcchHHHHHHHHHHcCCHHHH
Confidence 457778888888 567788888888888887655
No 392
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=42.92 E-value=45 Score=21.89 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002477 426 WVAFAKLYETYKDIANARVIFDKAVQ 451 (917)
Q Consensus 426 w~~~a~~~~~~g~~~~A~~i~e~al~ 451 (917)
|..+...|.+.|++++|..+|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666677777777777777777655
No 393
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=42.59 E-value=8.6e+02 Score=31.31 Aligned_cols=175 Identities=16% Similarity=0.217 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhc-----CCChHHHHHHHHHHhh------cccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcC
Q 002477 84 YETLNNTFERALVTM-----HKMPRIWIMYLETLTS------QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG 152 (917)
Q Consensus 84 ~~~a~~~~eraL~~~-----p~~~~lw~~y~~~~~~------~~~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~ 152 (917)
|..|..+|+--|..+ .++|+=++-|++=+-+ +-+|+.-+.-|++||..+-.. ....|.....+..+++
T Consensus 844 fn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~-~~~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 844 FNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC-GETYFPECKNYIKKHG 922 (1265)
T ss_pred HHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-CccccHHHHHHHHhcc
Confidence 555555555433322 5778877777765542 225788888899999887743 3557888889988888
Q ss_pred CChHhHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCCccccccCCCchHHHHHHHHHHhcccccccccc
Q 002477 153 IPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLN 232 (917)
Q Consensus 153 ~~~~~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~ 232 (917)
.+ ..|..+|+--.+..-.-.+.|..+|...+.+++|.-.|...-+...-. . .-....-|.+.+.+..+-...
T Consensus 923 Ly-~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl-~-a~~~~~dWr~~l~~a~ql~~~----- 994 (1265)
T KOG1920|consen 923 LY-DEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKAL-K-AYKECGDWREALSLAAQLSEG----- 994 (1265)
T ss_pred cc-hhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH-H-HHHHhccHHHHHHHHHhhcCC-----
Confidence 77 666655532211111113556667777777777766665443210000 0 000001244444433311110
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcc
Q 002477 233 VDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTV 279 (917)
Q Consensus 233 ~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~ 279 (917)
.++...+-..|+.-...+++.-+|-++.++.+...
T Consensus 995 ------------~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 995 ------------KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred ------------HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 01111122456666677788888888888877744
No 394
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.86 E-value=83 Score=21.94 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHH--HHHHHhhCCC
Q 002477 626 LYLQYAKLEEDYGLAKRAMKV--YDQATKAVPN 656 (917)
Q Consensus 626 l~~~~a~~e~~~g~~~~A~~~--y~~al~~~p~ 656 (917)
.|..+|-....+|++++|+.+ |.-++...|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 355666666677777777777 4466555543
No 395
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=40.92 E-value=2.1e+02 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc
Q 002477 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 531 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f 579 (917)
+++|+.+..++++ ....|++++|+..|..|+..|
T Consensus 3 l~~Ai~lv~~Av~---------------~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 3 LEKAIALVVQAVK---------------KDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHH---------------HHHhccHHHHHHHHHHHHHHH
Confidence 4556666666655 345788899999999888864
No 396
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=40.78 E-value=99 Score=32.61 Aligned_cols=60 Identities=22% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChH
Q 002477 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (917)
Q Consensus 524 l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~ 585 (917)
.+...+..+.|..+-++.+.++|.+|.-+.--|.+|.+.|.+.-|++-++..+.. +|+..
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~~ 249 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDDP 249 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCch
Confidence 3455678999999999999999999999999999999999999999999998886 66653
No 397
>PF12457 TIP_N: Tuftelin interacting protein N terminal ; InterPro: IPR022159 This domain family is found in eukaryotes, and is typically between 99 and 114 amino acids in length. The family is found in association with PF01585 from PFAM. There are two completely conserved residues (G and F) that may be functionally important. TIP is involved in enamel assembly by interacting with one of the major proteins responsible for biomineralisation of enamel - tuftelin.
Probab=40.76 E-value=22 Score=31.97 Aligned_cols=14 Identities=50% Similarity=0.783 Sum_probs=11.1
Q ss_pred CCcccceecCCcCC
Q 002477 823 SRKVGFVSAGVESQ 836 (917)
Q Consensus 823 ~~~~~~~~~~~~~~ 836 (917)
..+|+||+++++..
T Consensus 69 skpv~FVS~G~~~~ 82 (109)
T PF12457_consen 69 SKPVNFVSGGVQQP 82 (109)
T ss_pred CCCCceeeCCcccC
Confidence 46899999998654
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.60 E-value=2e+02 Score=34.50 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=25.4
Q ss_pred HHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002477 716 ARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNEDTFREM 755 (917)
Q Consensus 716 Ar~i~~~a~~~-~~P~~~~~~w~~~~~fe~~~G~~~~a~~~ 755 (917)
-..+|.+..-. .+|.........|.+|.++.-+.++..-.
T Consensus 408 ni~l~~~fr~t~e~p~~e~q~~~FWmdF~leat~td~t~~~ 448 (1226)
T KOG4279|consen 408 NILLINRFRPTIEPPEKEKQQFLFWMDFFLEATETDTTISC 448 (1226)
T ss_pred HHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhcCccccccc
Confidence 34466665432 24555667888889998887776665443
No 399
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=6.8e+02 Score=29.53 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=66.0
Q ss_pred CcHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHH-HHHHHHHHHHcCCChhHHH
Q 002477 421 KPHTLWVAF--AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK-GALELMRRATAEPSVEVRR 497 (917)
Q Consensus 421 ~~~~lw~~~--a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~-~A~~~l~~al~~~~~~~~~ 497 (917)
..+.+..+. .-.+...++...+...+..++.++|.+. .....++......|..- .+..+-+.+....+
T Consensus 63 ~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~----- 133 (620)
T COG3914 63 VNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC----PAVQNLAAALELDGLQFLALADISEIAEWLSP----- 133 (620)
T ss_pred CCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc----hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-----
Confidence 344543333 3344456677777777888888888776 66666665444444433 34444444555433
Q ss_pred hhhhcCCchhhhhhhccHHHHHH------HHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 002477 498 RVAADGNEPVQMKLHKSLRLWTF------YVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (917)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~w~~------~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~ 557 (917)
.+...... .+++...+|+..++....+++.++.|.++.+.-.+.-
T Consensus 134 ---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 134 ---------------DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred ---------------chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 12332222 3555566677788888888888888877766555443
No 400
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.44 E-value=2.7e+02 Score=32.94 Aligned_cols=103 Identities=9% Similarity=0.075 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-hhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002477 462 SIWCEWAEMELRHKNFKGALELMRRATAEPS-VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (917)
Q Consensus 462 ~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~ 540 (917)
-+|...+... +..+|..+++.|...+..-+ .....+ -.++...+.-+|..+.+.|+|.++|+.
T Consensus 356 iLWn~A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~---------------FaK~qR~l~~CYL~L~QLD~A~E~~~E 419 (872)
T KOG4814|consen 356 LLWNTAKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDR---------------FAKIQRALQVCYLKLEQLDNAVEVYQE 419 (872)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHhccchhhhhH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566555543 56678888888888775433 111111 146666777778888899999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC
Q 002477 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (917)
Q Consensus 541 al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~ 580 (917)
+-+.+|.+|-.-...-......+.-++|+.+.......+.
T Consensus 420 AE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 420 AEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 9999998876554444444556777888888877776653
No 401
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.32 E-value=1.2e+02 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.708 Sum_probs=16.1
Q ss_pred HHHccCHHHHHHHHHHHhhcc
Q 002477 559 LEEHKYFEDAFRVYERGVKIF 579 (917)
Q Consensus 559 ~~~~g~~e~A~~~~eral~~f 579 (917)
+...|++++|+..|..||..|
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 456788888888888888764
No 402
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.96 E-value=6.3e+02 Score=31.29 Aligned_cols=177 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHhhcccHHHHHHHHHHHHHhCCCCC
Q 002477 61 KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMP----RIWIMYLETLTSQKFITKARRTFDRALCALPVTQ 136 (917)
Q Consensus 61 ~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~----~lw~~y~~~~~~~~~~~~ar~~~~rAL~~~P~~~ 136 (917)
.+|.-|++.- -|++||+....-| .+...++.|++..+.++.|-.+|-..+...-
T Consensus 363 ~vWk~yLd~g-------------------~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE--- 420 (911)
T KOG2034|consen 363 DVWKTYLDKG-------------------EFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE--- 420 (911)
T ss_pred HHHHHHHhcc-------------------hHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH---
Q ss_pred chHHHHHHHHHHHHcCCChHhHHHHHHHHHccCCCC---HHHHHHHHHhcccHHHHHHHHHHHh-cCCccccccCCCchH
Q 002477 137 HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH---IEDFIEFLVKSKLWQEAAERLASVL-NDDQFYSIKGKTKHR 212 (917)
Q Consensus 137 ~~~iw~~y~~~~~~~~~~~~~a~~~~~r~l~~~P~~---~~~~i~~l~~~~~~~~A~~~l~~~l-~~~~~~~~~~~~~~~ 212 (917)
...++|......- ....-+.++.=.+-|.+ ...+..++ .+--.+.+..+. .++.+...-.....+
T Consensus 421 -----EVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WL-----lel~L~~Ln~l~~~de~~~en~~~~~~~ 489 (911)
T KOG2034|consen 421 -----EVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWL-----LELYLEQLNDLDSTDEEALENWRLEYDE 489 (911)
T ss_pred -----HHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHH-----HHHHHHHHhcccccChhHHHHHHHHHHH
Q ss_pred HHHHHHHHHhccccccccccHHHHHHhhhhcccchhhHHHHH--------HHHHHHHhCcHHHHHHHHHH
Q 002477 213 LWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTS--------LADYYIRRELFEKARDIFEE 274 (917)
Q Consensus 213 lw~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~--------la~~y~~~g~~e~A~~~~e~ 274 (917)
.-.++..+..++.+.. ......+.+..+.+...-+... +..+++.++.|++|..++..
T Consensus 490 ~~re~~~~~~~~~~~~----nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 490 VQREFSKFLVLHKDEL----NRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHhhHHhh----hHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 403
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=37.96 E-value=79 Score=20.75 Aligned_cols=28 Identities=4% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERILDL 544 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~al~~ 544 (917)
.|...++.+.+.|+++.|..+|+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4666777777788888888888877764
No 404
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.82 E-value=1.1e+02 Score=36.90 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=13.8
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q 002477 52 ALKALPGSYKLWHAYLIER 70 (917)
Q Consensus 52 al~~~P~s~~lW~~yl~~~ 70 (917)
.+.++|.+...|..|+.+.
T Consensus 755 ~v~~fsrn~~~~e~wa~l~ 773 (913)
T KOG1972|consen 755 GVTLFSRNAFGWELWAELE 773 (913)
T ss_pred chhhccccchhHHHHHHHH
Confidence 4777788887777776664
No 405
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.27 E-value=3.1e+02 Score=33.09 Aligned_cols=177 Identities=13% Similarity=0.134 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--hhhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcCCChhHH
Q 002477 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV--DHLASIWCEWAEMEL---RHKNFKGALELMRRATAEPSVEVR 496 (917)
Q Consensus 422 ~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~--~~l~~~w~~~a~~e~---~~~~~~~A~~~l~~al~~~~~~~~ 496 (917)
.+++-..+...|....+++.-..+.+..-++ |+.. .+-..+-+.|+-..- +-|+.++|+.++-.+++...
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg---- 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG---- 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC----
Confidence 3466677777788888898888777765544 3211 111122333333222 23577888888777765422
Q ss_pred HhhhhcCCchhhhhhhccHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcc-CHH
Q 002477 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEE---------SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK-YFE 566 (917)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~---------~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g-~~e 566 (917)
. -.+.++...+.+|. ..+..+.|..+|.++++..|. ...-+|+|.++...| .|+
T Consensus 275 -------~--------vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 275 -------P--------VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred -------C--------CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHHhhhhcc
Confidence 1 12334433333332 235778999999999998873 345567777776554 677
Q ss_pred HHHHHHHHHhhcc---CCCC----hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Q 002477 567 DAFRVYERGVKIF---KYPH----VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (917)
Q Consensus 567 ~A~~~~eral~~f---~~P~----~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~ 620 (917)
..+++-.=|+.+- ..-. -.+.|.. +..|....-.+++.+|...-++..++.|+
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV-~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDV-ATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhH-HHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 7777766666651 0111 1244543 22333333457899999999999998887
No 406
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=37.25 E-value=5e+02 Score=31.62 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhc-----CCChHHHHHHHHHHhhcc------cHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcC
Q 002477 84 YETLNNTFERALVTM-----HKMPRIWIMYLETLTSQK------FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG 152 (917)
Q Consensus 84 ~~~a~~~~eraL~~~-----p~~~~lw~~y~~~~~~~~------~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~ 152 (917)
++.|..+|...|..+ .+.|+.++-++.-.-.+. .++.-...|++||..+.. ...+......|..++.
T Consensus 828 ~~~aLsLyd~slalliaq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E--~~n~~~Ev~~yi~~hd 905 (1243)
T COG5290 828 NEFALSLYDKSLALLIAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNE--DLNVIREVMKYICRHD 905 (1243)
T ss_pred HHHHhHHHHHHHHHHHHHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHh--HHHHHHHHHHHHHhcc
Confidence 566667776665543 567787666555332222 467778889999988873 3345566667766666
Q ss_pred CChHhHHHHHHHHHccCCCCHHHHHHHHHhcccHHHHHHHHH
Q 002477 153 IPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLA 194 (917)
Q Consensus 153 ~~~~~a~~~~~r~l~~~P~~~~~~i~~l~~~~~~~~A~~~l~ 194 (917)
.+ +.+..+|+-==+....-...|+.++...+.+.+|...|.
T Consensus 906 ly-~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye 946 (1243)
T COG5290 906 LY-DFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYE 946 (1243)
T ss_pred ch-HHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHH
Confidence 65 666665543222222334566667776666666665554
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.88 E-value=1.3e+02 Score=24.29 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=17.3
Q ss_pred HHHHHHccCHHHHHHHHHHHhhc
Q 002477 556 ALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 556 a~~~~~~g~~e~A~~~~eral~~ 578 (917)
|.-..+.|++++|+..|..|+..
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 33456688888888888888875
No 408
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.14 E-value=3.5e+02 Score=24.87 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=59.0
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhccCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHhhccC-
Q 002477 516 RLWTFYVDLEE--SLGNLESTRAVYERILDLRIATP------------QIIINYALLLEEHKYFEDAFRVYERGVKIFK- 580 (917)
Q Consensus 516 ~~w~~~~~l~~--~~g~~~~A~~~y~~al~~~p~~~------------~~~~~~a~~~~~~g~~e~A~~~~eral~~f~- 580 (917)
..+..+.+.+. .-|.++.|..-|.++++..-.-| -.+-.++..+...|.|++++..-++++..|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 33444444443 34889999999999998743322 2345577788889999998888888887652
Q ss_pred ----CCChHHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHH
Q 002477 581 ----YPHVKDIWVTYL-SKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 581 ----~P~~~~lw~~yl-~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
+.+...+|..-+ +....-.+.|..++|...|..+-+
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 233456665432 111111244566666666666543
No 409
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.98 E-value=54 Score=27.27 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=10.5
Q ss_pred hCCHHHHHHHHHHHHhh
Q 002477 637 YGLAKRAMKVYDQATKA 653 (917)
Q Consensus 637 ~g~~~~A~~~y~~al~~ 653 (917)
.|++++|+.+|..|++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46666666666666653
No 410
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=33.77 E-value=2.6e+02 Score=31.96 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=36.7
Q ss_pred cccchhhHHHHHHHHHHHHhCcHHHHHHHHHHhhhcccchhchHHHHHHHH
Q 002477 243 KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYS 293 (917)
Q Consensus 243 ~~~~~~~~lw~~la~~y~~~g~~e~A~~~~e~al~~~~~~~d~~~i~~~y~ 293 (917)
.|||+ -..+.|.+.+++.|+|..|..|..+.+.........+.+...|+
T Consensus 134 iF~D~--~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 134 IFPDN--FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred cCCCh--hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 68886 46788999999999999999999988875433333445555555
No 411
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.68 E-value=3e+02 Score=28.40 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=21.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCh
Q 002477 432 LYETYKDIANARVIFDKAVQVNYKTV 457 (917)
Q Consensus 432 ~~~~~g~~~~A~~i~e~al~~~~~~~ 457 (917)
|....|+++.|..+.+.|++.+-..|
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~P 117 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMP 117 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCC
Confidence 66788999999999999998764444
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.34 E-value=1e+03 Score=29.45 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 549 PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 549 ~~~~~~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
..+...||..+...|++++|...|-+.|..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 357888999999999999999999999985
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=2.9e+02 Score=32.46 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcC
Q 002477 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (917)
Q Consensus 424 ~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~ 503 (917)
......|.|.+++|-.++| |.+.+... -. -++.++.|+++.|.++..++
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~d-----~r---Felal~lgrl~iA~~la~e~---------------- 663 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDPD-----QR---FELALKLGRLDIAFDLAVEA---------------- 663 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCChh-----hh---hhhhhhcCcHHHHHHHHHhh----------------
Confidence 5567888888888865554 44433221 11 22336778888888776654
Q ss_pred CchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002477 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (917)
Q Consensus 504 ~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~ 544 (917)
.+..-|..++++..+.|++..|.++|.++.++
T Consensus 664 ---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 664 ---------NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred ---------cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 24677999999999999999999999998875
No 414
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=32.41 E-value=2.8e+02 Score=25.98 Aligned_cols=51 Identities=10% Similarity=0.200 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~ 653 (917)
.++.+.--+++......... .+++.+.+|..+.+.|+.++|-.++.+|++.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp TT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45667777777666643323 5889999999999999999999999999875
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.17 E-value=7.7e+02 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=14.1
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhC
Q 002477 595 FVKRYGKTKLERARELFENAVETA 618 (917)
Q Consensus 595 ~~~~~~~~~~e~Ar~lfe~al~~~ 618 (917)
...|...|+++.|.-.+=++++..
T Consensus 248 A~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 248 AERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344445566666666666666553
No 416
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.03 E-value=4e+02 Score=34.45 Aligned_cols=156 Identities=19% Similarity=0.122 Sum_probs=87.7
Q ss_pred HHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC----CChhhhHHHHHHHHHHHHhcCCHHHH
Q 002477 405 TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY----KTVDHLASIWCEWAEMELRHKNFKGA 480 (917)
Q Consensus 405 ~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~----~~~~~l~~~w~~~a~~e~~~~~~~~A 480 (917)
.++.......| .....+..+|..+...|+.++|...-.++.-+.- .+..+-..-+..++-++...++...|
T Consensus 960 l~~~v~~~~h~-----~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a 1034 (1236)
T KOG1839|consen 960 LLNNVMGVLHP-----EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGA 1034 (1236)
T ss_pred HHHHhhhhcch-----hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccch
Confidence 55544433344 4667789999999999999999988777654321 11122235555666667777888888
Q ss_pred HHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CC---CHHHH
Q 002477 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-----IA---TPQII 552 (917)
Q Consensus 481 ~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~-----p~---~~~~~ 552 (917)
...+.++...-. ... |. ..|.-..+......++...+.++.|..+.+.++... |. +...+
T Consensus 1035 l~~~~ra~~l~~-----Ls~--ge-----~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1035 LKSLNRALKLKL-----LSS--GE-----DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred hhhHHHHHHhhc-----ccc--CC-----CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 888888764311 000 00 011222333344444555667778888887777642 11 12234
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 553 INYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 553 ~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
..+++.....+.+..|.........
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 4445555555555554444443333
No 417
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=31.67 E-value=8.8e+02 Score=28.20 Aligned_cols=190 Identities=14% Similarity=0.129 Sum_probs=115.7
Q ss_pred HhhCCCCHHHHHHHHHHHcCCchHHH--HHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 002477 378 LRQNPHNVEQWHRRVKIFEGNPTKQI--LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 378 L~~nP~~~~~w~~~~~l~~~~~~~a~--~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~ 455 (917)
+...|.|-......+.++..+...++ .++++.+.- +.+--.+..++++|..+ ..++--.++++.++.+++
T Consensus 59 ~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn 130 (711)
T COG1747 59 LSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN 130 (711)
T ss_pred hhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch
Confidence 34556666667777888876654333 467777743 34566788899999887 557778899999999998
Q ss_pred ChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-CCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHH
Q 002477 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATA-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (917)
Q Consensus 456 ~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A 534 (917)
++ ..--.++..+.+ .+...+...|.+++. .-| ++. ...--.+|..+..+- -.+.+.-
T Consensus 131 Dv----v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~----~~q-----------~~~i~evWeKL~~~i--~dD~D~f 188 (711)
T COG1747 131 DV----VIGRELADKYEK-IKKSKAAEFFGKALYRFIP----RRQ-----------NAAIKEVWEKLPELI--GDDKDFF 188 (711)
T ss_pred hH----HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcc----hhh-----------hhhHHHHHHHHHHhc--cccHHHH
Confidence 87 777788888766 788999999999984 222 000 001224565544321 1234444
Q ss_pred HHHHHHHHhccC-CCHHHHHHHH-HHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHh
Q 002477 535 RAVYERILDLRI-ATPQIIINYA-LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY 599 (917)
Q Consensus 535 ~~~y~~al~~~p-~~~~~~~~~a-~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~ 599 (917)
..+..++-.... .-..+.+... .-|..+.++.+|+++....++. +..+.-.....+..+..+|
T Consensus 189 l~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 189 LRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH--DEKDVWARKEIIENLRDKY 253 (711)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHHHHHh
Confidence 433333332211 1123333333 4566778999999999988885 4444322333333333333
No 418
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=30.78 E-value=1.5e+02 Score=24.75 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHH
Q 002477 643 AMKVYDQATKAVPNHEKLGMYEIYI 667 (917)
Q Consensus 643 A~~~y~~al~~~p~~~~~~l~~~~i 667 (917)
|++++.+++...|+++...++..-+
T Consensus 32 aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 32 AIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3333344444556555444444333
No 419
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.67 E-value=3.4e+02 Score=32.15 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=58.6
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHH
Q 002477 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (917)
Q Consensus 472 ~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~ 551 (917)
.+....+.++.+.+.-+.... .+......-+.+....+..+.|-++|++.+..+|+ ..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 76 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEA--------------------LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EA 76 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccc--------------------hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--ch
Confidence 345566777766666543321 12233334455556678889999999999998887 78
Q ss_pred HHHHHHHHHHccCHHHHHHHHH
Q 002477 552 IINYALLLEEHKYFEDAFRVYE 573 (917)
Q Consensus 552 ~~~~a~~~~~~g~~e~A~~~~e 573 (917)
+..||+-+.+.|-..+|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 77 RYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHhhhhhhHHHHHHH
Confidence 9999999999999999999988
No 420
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.58 E-value=8.9e+02 Score=27.94 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=112.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 523 DLEESLGNLESTRAVYERILDLRIAT----------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 523 ~l~~~~g~~~~A~~~y~~al~~~p~~----------~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
-+..-.|++.+|..-...+.+..-.+ +++..-+|......|.++.|..-|..++++. +.-++|...-
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t---~~~dl~a~~n 407 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT---ESIDLQAFCN 407 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 33445688888888887777764333 3455566666677788888888888888852 2334443211
Q ss_pred H-HHHHHhCCCChHHHHHHHHHHHHhCCcCC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHH
Q 002477 593 S-KFVKRYGKTKLERARELFENAVETAPADA--------VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (917)
Q Consensus 593 ~-~~~~~~~~~~~e~Ar~lfe~al~~~p~~~--------~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~ 663 (917)
. ..+.+... -++.++|+-.=...|.+. -..+++.+|-+...+|++.+|...+.+.++..-..+...
T Consensus 408 lnlAi~YL~~---~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r-- 482 (629)
T KOG2300|consen 408 LNLAISYLRI---GDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR-- 482 (629)
T ss_pred HhHHHHHHHh---ccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH--
Confidence 1 11112222 233333332222234311 123556666666666666666666665555431100000
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccC--CCCCCHHHHHH--H
Q 002477 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA--DPRSDTEFWNR--W 739 (917)
Q Consensus 664 ~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~--~P~~~~~~w~~--~ 739 (917)
-..-....++.+....|+..+++.+..-+.+.. -|+....+|.. +
T Consensus 483 -------------------------------L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~ 531 (629)
T KOG2300|consen 483 -------------------------------LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSIL 531 (629)
T ss_pred -------------------------------HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHH
Confidence 001123445666778899999988877776652 56667889987 7
Q ss_pred HHHHHHcCC--HHHHHHHHH
Q 002477 740 HEFEVNHGN--EDTFREMLR 757 (917)
Q Consensus 740 ~~fe~~~G~--~~~a~~~lr 757 (917)
.++....|+ .+...++++
T Consensus 532 ~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 532 TDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHhCcchhhHHHHHHH
Confidence 778888888 555556663
No 421
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=29.89 E-value=7.5e+02 Score=26.85 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 002477 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII-INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 514 ~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~-~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl 592 (917)
...+...-.+++.+.+.+|-+...|...--- -.-|... -.-..+..+.+..++...-.-.++. +|+....
T Consensus 34 ~keLle~k~~ll~~TNMiDy~md~~k~l~~s-ed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le---~Pd~~~~----- 104 (432)
T KOG2758|consen 34 EKELLEAKLQLLNKTNMIDYVMDTYKNLHTS-EDMPNALVEKRTEVLAELKELEEEVAPIVKVLE---NPDLIAA----- 104 (432)
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHhccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHH-----
Confidence 3455555566666777788888888765321 1234433 3345555555555555544444444 5543211
Q ss_pred HHHHHHhCCCChHHHHHHHHHHH---HhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q 002477 593 SKFVKRYGKTKLERARELFENAV---ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al---~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~ 669 (917)
.. . +.++ +..++..- ...|. .....+.||+|...+|++..|-.++-.....+++.+.-.+-..|...
T Consensus 105 ---~~--~--~k~~-~~~l~~L~e~ynf~~e--~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKl 174 (432)
T KOG2758|consen 105 ---LR--S--DKDR-VQNLQHLQEHYNFTPE--RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKL 174 (432)
T ss_pred ---HH--h--hhhH-HHHHHHHHHhcCCCHH--HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 10 0 0111 22222222 22344 56778888888888888888877765555555554442332233332
Q ss_pred H--HHhcCcchHHHHHHHHHHh
Q 002477 670 A--AEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 670 ~--~~~~~~~~ar~~ye~al~~ 689 (917)
+ .-..+++.|++-..+.-+.
T Consensus 175 ASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 175 ASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 2 2245666777666655443
No 422
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=29.59 E-value=2.1e+02 Score=33.05 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHH
Q 002477 565 FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644 (917)
Q Consensus 565 ~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~ 644 (917)
...++..|.+++.. .|....++..++..+++|.=.++.--|..-...|++.+|. ....|+.++.++...+.+.+|+
T Consensus 390 ~~~~i~~~s~a~q~--~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s--~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 390 VSGAISHYSRAIQY--VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS--IQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHhhh--ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--HHHHHHHHHHHHHHHhhHHHhh
Confidence 45566667777763 5666566666666566554334455555555666666666 5667777777777777777777
Q ss_pred HHHHHHHhhCCC
Q 002477 645 KVYDQATKAVPN 656 (917)
Q Consensus 645 ~~y~~al~~~p~ 656 (917)
+...-+...+|.
T Consensus 466 ~~~~alq~~~Pt 477 (758)
T KOG1310|consen 466 SCHWALQMSFPT 477 (758)
T ss_pred hhHHHHhhcCch
Confidence 776666555664
No 423
>PRK12798 chemotaxis protein; Reviewed
Probab=29.50 E-value=8.7e+02 Score=27.48 Aligned_cols=198 Identities=14% Similarity=0.054 Sum_probs=123.7
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCCh
Q 002477 525 EESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKL 604 (917)
Q Consensus 525 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~ 604 (917)
..+-|++...+.+..+-.. + +.+.-+..+..-.-.|+..++.+.+...-... -|...-.....+.... +...+.
T Consensus 91 ~lSGGnP~vlr~L~~~d~~--~-~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l--~~~~dP 164 (421)
T PRK12798 91 LLSGGNPATLRKLLARDKL--G-NFDQRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNL--MVATDP 164 (421)
T ss_pred HhcCCCHHHHHHHHHcCCC--C-hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHH--hcccCH
Confidence 3556788766655554332 1 23333334444445788899988887665432 2332222222221111 145689
Q ss_pred HHHHHHHHHHHHhCCcCCcHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCCChHHHHHH-HHHHHHHhcCcchHHHH
Q 002477 605 ERARELFENAVETAPADAVKPLYLQYAKLE-EDYGLAKRAMKVYDQATKAVPNHEKLGMYEI-YIARAAEIFGVPKTREI 682 (917)
Q Consensus 605 e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e-~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~-~i~~~~~~~~~~~ar~~ 682 (917)
.+|..+|+++-=..|...-.+.-+...-+. .+.|+.++.+.+-.+-+..+..++...-|.- +.......++-. --..
T Consensus 165 ~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~ 243 (421)
T PRK12798 165 ATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDAR 243 (421)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHH
Confidence 999999999988899853344444444443 5789999999998888888888776543332 333223333222 2233
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 002477 683 YEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (917)
Q Consensus 683 ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~ 730 (917)
....+.. .+...-..+++..+.--.-.|+.+.|+-.-++|..+.++.
T Consensus 244 l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~ 290 (421)
T PRK12798 244 LVEILSF-MDPERQRELYLRIARAALIDGKTELARFASERALKLADPD 290 (421)
T ss_pred HHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCC
Confidence 5666665 4444445789999998888999999999999999987554
No 424
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=29.29 E-value=1.8e+02 Score=30.75 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCC
Q 002477 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (917)
Q Consensus 534 A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~ 583 (917)
|+..|.+|+.+.|.+...|+.+|.+....|+.=.|+=.|-|++.. +.|-
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-~~Pf 49 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-RIPF 49 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-SB--
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc-CCCc
Confidence 678999999999999999999999999999999999999999975 4565
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.18 E-value=7.7e+02 Score=26.77 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=93.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 002477 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (917)
Q Consensus 536 ~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al 615 (917)
+.-..+++++|....+++.+|. ++.--..+|.+++.++++. -... ++. +.....++. . .+-..
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka--~e~~---yr~--sqq~qh~~~--~------~da~~ 267 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKA--GETI---YRQ--SQQCQHQSP--Q------HEAQL 267 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHH--HHHH---Hhh--HHHHhhhcc--c------hhhhh
Confidence 3344577888888888887774 3445577888889888885 1111 111 111111111 1 11111
Q ss_pred HhCCcCCcHHHH--HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCC
Q 002477 616 ETAPADAVKPLY--LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (917)
Q Consensus 616 ~~~p~~~~~~l~--~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~ 693 (917)
..+- +..+| ..++.+-.+.|..++|.++++...+..|-...+.+....++...+...+.....+.-+-=...+|.
T Consensus 268 rRDt---nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPk 344 (556)
T KOG3807|consen 268 RRDT---NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPK 344 (556)
T ss_pred hccc---chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcc
Confidence 1111 23344 347788888999999999999998888854444455555554444444444433333322223555
Q ss_pred chHHHHHHHHHHHH-------------HHcCC---hhHHHHHHHHHHccCCCCC
Q 002477 694 KDVKAMCLKYAELE-------------KSLGE---IDRARGIYVFASQFADPRS 731 (917)
Q Consensus 694 ~~~~~~~l~~a~le-------------~~~g~---~~~Ar~i~~~a~~~~~P~~ 731 (917)
+. .+|..-|-+- .+.|- -..|.+...+|+++ +|..
T Consensus 345 SA--~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEF-NPHV 395 (556)
T KOG3807|consen 345 SA--AICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEF-NPHV 395 (556)
T ss_pred hH--HHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhc-CCCC
Confidence 44 3343322111 12221 22566777888887 7763
No 426
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.08 E-value=7e+02 Score=25.89 Aligned_cols=49 Identities=27% Similarity=0.336 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHh----CCcCC--cHHHHHHHHHHHHH-hCCHHHHHHHHHHHHh
Q 002477 604 LERARELFENAVET----APADA--VKPLYLQYAKLEED-YGLAKRAMKVYDQATK 652 (917)
Q Consensus 604 ~e~Ar~lfe~al~~----~p~~~--~~~l~~~~a~~e~~-~g~~~~A~~~y~~al~ 652 (917)
.++|...|++|++. .|+.. -..+.++|+-|+.. .|+.++|+.+.+.|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47788888888754 33321 12467778888755 8888888888777765
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.47 E-value=5.3e+02 Score=24.29 Aligned_cols=62 Identities=10% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Q 002477 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (917)
Q Consensus 516 ~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~ 577 (917)
+..-.-.+.....|.-|.--+++...+...-.+|.+.+.+|..|.+.|+..++-.++.+|.+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444455667789999988999988865556899999999999999999999999888876
No 428
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.46 E-value=1.9e+02 Score=35.02 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhh
Q 002477 90 TFERALVTMHKMPRIWIMYLETLTS 114 (917)
Q Consensus 90 ~~eraL~~~p~~~~lw~~y~~~~~~ 114 (917)
.|+.-+..+|.+...|..|+.++..
T Consensus 751 F~e~~v~~fsrn~~~~e~wa~l~s~ 775 (913)
T KOG1972|consen 751 FFEEGVTLFSRNAFGWELWAELESE 775 (913)
T ss_pred eeccchhhccccchhHHHHHHHHHH
Confidence 3333466778888888888877643
No 429
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.38 E-value=1.1e+03 Score=28.10 Aligned_cols=136 Identities=14% Similarity=0.055 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcHHHHHH
Q 002477 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (917)
Q Consensus 550 ~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~ 629 (917)
......+.|++.+|..++|+.+ -.+|+.. |......++++.|.++..++ + +..=|-.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~-------s~D~d~r---------Felal~lgrl~iA~~la~e~-----~--s~~Kw~~ 671 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL-------STDPDQR---------FELALKLGRLDIAFDLAVEA-----N--SEVKWRQ 671 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc-------CCChhhh---------hhhhhhcCcHHHHHHHHHhh-----c--chHHHHH
Confidence 4567789999999987766543 2355431 11111446788888876665 3 4566999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 002477 630 YAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709 (917)
Q Consensus 630 ~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~ 709 (917)
+|.+-...|++..|.+.|.+|-... ..+..+...|+-+....+-..+-+. -.++.+ .+. +..
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d~~----------~LlLl~t~~g~~~~l~~la~~~~~~-g~~N~A---F~~----~~l 733 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARDLG----------SLLLLYTSSGNAEGLAVLASLAKKQ-GKNNLA---FLA----YFL 733 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcchh----------hhhhhhhhcCChhHHHHHHHHHHhh-cccchH---HHH----HHH
Confidence 9999999999999999999885432 1111112223333222333333332 112211 221 235
Q ss_pred cCChhHHHHHHHHHHcc
Q 002477 710 LGEIDRARGIYVFASQF 726 (917)
Q Consensus 710 ~g~~~~Ar~i~~~a~~~ 726 (917)
.|+++++..++...-.+
T Consensus 734 ~g~~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 734 SGDYEECLELLISTQRL 750 (794)
T ss_pred cCCHHHHHHHHHhcCcC
Confidence 78999988888766443
No 430
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=27.31 E-value=2e+02 Score=33.10 Aligned_cols=85 Identities=16% Similarity=0.007 Sum_probs=67.2
Q ss_pred CchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHHhc
Q 002477 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY---KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (917)
Q Consensus 398 ~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~---g~~~~A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~ 474 (917)
....++..|.+++... | ....++..+|..+.+. |+.=.|..-.-.|+..+|... ..|..+++.....
T Consensus 389 ~~~~~i~~~s~a~q~~-~-----~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~----kah~~la~aL~el 458 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYV-P-----DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ----KAHFRLARALNEL 458 (758)
T ss_pred HHHHHHHHHHHHhhhc-c-----chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH----HHHHHHHHHHHHH
Confidence 3456788888888652 3 4677888888888775 466667777778888999888 9999999999999
Q ss_pred CCHHHHHHHHHHHHcCCC
Q 002477 475 KNFKGALELMRRATAEPS 492 (917)
Q Consensus 475 ~~~~~A~~~l~~al~~~~ 492 (917)
+.+.+|+.....+...+|
T Consensus 459 ~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFP 476 (758)
T ss_pred hhHHHhhhhHHHHhhcCc
Confidence 999999998888777766
No 431
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=26.79 E-value=3.9e+02 Score=22.55 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHH---HHHhCCHHHHHHH
Q 002477 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKL---EEDYGLAKRAMKV 646 (917)
Q Consensus 600 ~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~---e~~~g~~~~A~~~ 646 (917)
...+.+.|...+.++++..++ ...-|..+|.+ +...|.++.+++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888877666 44455554444 4445555554443
No 432
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=25.81 E-value=8.4e+02 Score=26.06 Aligned_cols=117 Identities=11% Similarity=0.003 Sum_probs=67.6
Q ss_pred HHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-hcCCCCCchhHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 002477 36 AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSI-VKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTS 114 (917)
Q Consensus 36 ~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~-~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lw~~y~~~~~~ 114 (917)
..+...|.+....|++..+....|..-...|....... +-................+.=+..+|+++-.|+..+.++.+
T Consensus 10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 10 LLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 45677888888888888877665444433344332110 00000011112245566666677789999999999998864
Q ss_pred cc----------------------cHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHcCCC
Q 002477 115 QK----------------------FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP 154 (917)
Q Consensus 115 ~~----------------------~~~~ar~~~~rAL~~~P~~~~~~iw~~y~~~~~~~~~~ 154 (917)
.. -.++|...+.+|+..+| +........+......|.|
T Consensus 90 ~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~p--r~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 90 RAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSP--RPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHhhcCCc
Confidence 22 01456666777777777 3344444555555555555
No 433
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=25.53 E-value=6.8e+02 Score=24.91 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHcCCchHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhccCC
Q 002477 381 NPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-----YKDIANARVIFDKAVQVNYK 455 (917)
Q Consensus 381 nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~-----~g~~~~A~~i~e~al~~~~~ 455 (917)
.|..-.....+.+-...++++|..+|+.-- +. ...+...+.|+.++.. .+++..|...|..+...+
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC---de----n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n-- 103 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNC---DE----NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN-- 103 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc----cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC--
Confidence 344333334444444567778888876532 22 1355677888887764 357889999999988743
Q ss_pred ChhhhHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHcCCC
Q 002477 456 TVDHLASIWCEWAEMELRHK--------NFKGALELMRRATAEPS 492 (917)
Q Consensus 456 ~~~~l~~~w~~~a~~e~~~~--------~~~~A~~~l~~al~~~~ 492 (917)
.+ . -|.+.-+..-+| +..+|++.+.|+.....
T Consensus 104 ~~----~-aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~ 143 (248)
T KOG4014|consen 104 IP----Q-ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED 143 (248)
T ss_pred CH----H-HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC
Confidence 22 2 222333322222 47899999999998754
No 434
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=24.92 E-value=1.5e+03 Score=28.80 Aligned_cols=300 Identities=12% Similarity=0.079 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChhhhHHHHHH--HHHHHHhcCCH
Q 002477 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCE--WAEMELRHKNF 477 (917)
Q Consensus 400 ~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~~~l~~~w~~--~a~~e~~~~~~ 477 (917)
++|+..|+..-.+ ...+-=|..-|.+|.+.|++++-.+.|.-|++.-|.+| .+..+--. +--.+.-..+.
T Consensus 536 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 607 (932)
T PRK13184 536 TQALSEFSYLHGG-------VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP-EISRLRDHLVYRLHESLYKHR 607 (932)
T ss_pred HHHHHHHHHhcCC-------CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHHHHHHHH
Confidence 3455555554433 12344577888899999999999999999999887776 11111111 11112223344
Q ss_pred HHHHHHHHHHHcCCChhH-----HHhhhh----cCCc--------hhhh---hhhccHHHHHHHHHHHHHcCCHHHHHHH
Q 002477 478 KGALELMRRATAEPSVEV-----RRRVAA----DGNE--------PVQM---KLHKSLRLWTFYVDLEESLGNLESTRAV 537 (917)
Q Consensus 478 ~~A~~~l~~al~~~~~~~-----~~~~~~----~~~~--------~~~~---~~~~~~~~w~~~~~l~~~~g~~~~A~~~ 537 (917)
..|...+--++...|..+ ++.... -... |.+. ++.--...|. |..----.+
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 678 (932)
T PRK13184 608 REALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWS---------GFTPFLPEL 678 (932)
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHh---------cCchhhHHH
Confidence 455555555555444221 111110 0111 1111 0111112232 333334467
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHH---HHHHhhccCCCChHH--HHHH---HHHHHHHHhCCCChHHHHH
Q 002477 538 YERILDLRIATPQIIINYALLLEEHKYFEDAFRV---YERGVKIFKYPHVKD--IWVT---YLSKFVKRYGKTKLERARE 609 (917)
Q Consensus 538 y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~---~eral~~f~~P~~~~--lw~~---yl~~~~~~~~~~~~e~Ar~ 609 (917)
|+++.++++- ++..+.-.+....|+++-+.+. +..-+.-+..|.+.. .|.. ++..+..- ...+..+.
T Consensus 679 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 753 (932)
T PRK13184 679 FQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEAL---SNKEDYEK 753 (932)
T ss_pred HHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHH---HccccHHH
Confidence 7888877553 4554544455667776644433 332223223444321 1221 11111111 12344455
Q ss_pred HHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCCh---HHHHHHHHHHHHHhcCcchHHHHHHHH
Q 002477 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK---LGMYEIYIARAAEIFGVPKTREIYEQA 686 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~---~~l~~~~i~~~~~~~~~~~ar~~ye~a 686 (917)
.|+ -+...|......++..++.--...++.+-.....+..-+..+.... +..+.+... .-..+..+|-.++.+-
T Consensus 754 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 830 (932)
T PRK13184 754 AFK-HLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAH--LWNRDLKKAYKLLNRY 830 (932)
T ss_pred HHh-hhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHH--HHhccHHHHHHHHHhC
Confidence 554 3344444111111111111111122222222222222222222222 222332222 3345677777766432
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 002477 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQ 725 (917)
Q Consensus 687 l~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~ 725 (917)
-.. .-......+.+.||..+.-.++.+-|..-|..|.+
T Consensus 831 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 831 PLD-LLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred Chh-hhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 211 11111226788889888888999999999998873
No 435
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=24.46 E-value=1.8e+02 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=36.6
Q ss_pred HcCChhHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002477 709 SLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (917)
Q Consensus 709 ~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr 757 (917)
...+.+.|..++.++++. .++ .++-|..++-....+.+.-.+++||.
T Consensus 18 ~~~~~~~Al~~W~~aL~k-~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK-ITD-REDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhh-cCC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999987 555 55788888777777777778888884
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.76 E-value=5.2e+02 Score=26.95 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=47.7
Q ss_pred HHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh---hhhHHHHHHHHHHHHhcCCHH
Q 002477 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV---DHLASIWCEWAEMELRHKNFK 478 (917)
Q Consensus 402 a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A~~i~e~al~~~~~~~---~~l~~~w~~~a~~e~~~~~~~ 478 (917)
.+.++++|+......+...-...+-..+|..|...|+++.|..+|+.++.. +... .=+..+...+.+...+.|+.+
T Consensus 157 iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~-yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 157 IIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS-YRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 444555555443221111123456678999999999999999999999653 2211 112344444555556666666
Q ss_pred HHHHHH
Q 002477 479 GALELM 484 (917)
Q Consensus 479 ~A~~~l 484 (917)
..+.+-
T Consensus 236 ~~l~~~ 241 (247)
T PF11817_consen 236 DYLTTS 241 (247)
T ss_pred HHHHHH
Confidence 655443
No 437
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=23.41 E-value=5.9e+02 Score=23.46 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHH
Q 002477 249 GRLWTSLADYYIR 261 (917)
Q Consensus 249 ~~lw~~la~~y~~ 261 (917)
.++|..++.+++.
T Consensus 125 ~~lw~~~~~~~l~ 137 (140)
T smart00299 125 PELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHHHHc
Confidence 4688888877764
No 438
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=23.20 E-value=6e+02 Score=23.46 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc-----------CC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHhhccCCC
Q 002477 519 TFYVDLEESLGNLESTRAVYERILDLR-----------IA-----TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (917)
Q Consensus 519 ~~~~~l~~~~g~~~~A~~~y~~al~~~-----------p~-----~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~~P 582 (917)
..........|+++....+.++.-..+ |. +..+....+..+..+|++..|+++.....+.++-|
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~ 85 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP 85 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC
Confidence 334444455677777777776654443 11 23577888888899999999999999999986666
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 002477 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (917)
Q Consensus 583 ~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~ 616 (917)
-...+|...+.-... ....+.+++...+.++-.
T Consensus 86 i~~~~W~~Ll~W~~v-~s~~~~~~~~~~~~~~~~ 118 (126)
T PF12921_consen 86 IPKEFWRRLLEWAYV-LSSKREDRAARYFLKCWN 118 (126)
T ss_pred CCHHHHHHHHHHHHH-hcCCcccccHHHHhhhhH
Confidence 668889887654332 233445666666666543
No 439
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=23.08 E-value=1.2e+03 Score=29.74 Aligned_cols=72 Identities=11% Similarity=0.237 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCH
Q 002477 675 GVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNE 749 (917)
Q Consensus 675 ~~~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~-~~P~~~~~~w~~~~~fe~~~G~~ 749 (917)
.+.+++.+|..+-..+. ......++-.|+.++...+.+.+|.++|.++++. +-| ...+-..+..|..+.|.-
T Consensus 93 ~~~d~~d~f~~m~~kgI-g~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP--~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGI-GTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP--LERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHhhHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHhhh
Confidence 44556666666655422 1222255667777777777788888888888776 333 235556666666665544
No 440
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=22.96 E-value=1e+03 Score=26.10 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCHH
Q 002477 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (917)
Q Consensus 513 ~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~~ 550 (917)
....+|...++++.++|..++|+..|++++.+-++.++
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 34567777888888889888999999998888665543
No 441
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=22.65 E-value=5.1e+02 Score=27.46 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCH
Q 002477 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (917)
Q Consensus 470 ~e~~~~~~~~A~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~~ 549 (917)
.+.+.++++.|..+.++.+...| .++.-|.--+-+|.++|-..-|++-++..++..|++|
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P--------------------~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNP--------------------EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCC--------------------CChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 34678899999999999998855 4677788889999999999999999999999999988
Q ss_pred HHHHH
Q 002477 550 QIIIN 554 (917)
Q Consensus 550 ~~~~~ 554 (917)
.+-.-
T Consensus 250 ~a~~i 254 (269)
T COG2912 250 IAEMI 254 (269)
T ss_pred HHHHH
Confidence 76443
No 442
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.28 E-value=7.7e+02 Score=24.40 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCChH-H---HHHHHHHHHHHhcCc
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL-G---MYEIYIARAAEIFGV 676 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~~y~~al~~~p~~~~~-~---l~~~~i~~~~~~~~~ 676 (917)
.++.++|...|...-+..-...-....+..+-+..+.|+...|+..|..+-.-.|-.... . +-..|+. ...|.+
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL--vD~gsy 148 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL--VDNGSY 148 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH--hccccH
Confidence 356778888877765554443223345556667777888888888888877655543222 2 2223332 344555
Q ss_pred chHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 002477 677 PKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (917)
Q Consensus 677 ~~ar~~ye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~ 726 (917)
+..-.-.+..-..+.|-... .--.++-.-.+.|++..|+.+|.....-
T Consensus 149 ~dV~srvepLa~d~n~mR~s--ArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHS--AREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHH--HHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55444333322111222221 1222333345889999999999988753
No 443
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=21.89 E-value=3.3e+02 Score=28.59 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccCCChhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 002477 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (917)
Q Consensus 442 A~~i~e~al~~~~~~~~~l~~~w~~~a~~e~~~~~~~~A~~~l~~al~~ 490 (917)
|+..|.+|..+.|.+- ..|.++|-+....|+.-.|+-.|-|++.+
T Consensus 1 A~~~Y~~A~~l~P~~G----~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG----NPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBS----HHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCC----CcccchhhhhccccchHHHHHHHHHHHhc
Confidence 5677888888888776 78888888887778888888778887755
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.70 E-value=6.4e+02 Score=23.24 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=58.7
Q ss_pred HHHHHHH--HHHHhcCCHHHHHHHHHHHHc----CCChhHHHhhhhcCCchhhhhhhccHHHHHHHHHHHHHcCCHH---
Q 002477 462 SIWCEWA--EMELRHKNFKGALELMRRATA----EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLE--- 532 (917)
Q Consensus 462 ~~w~~~a--~~e~~~~~~~~A~~~l~~al~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~g~~~--- 532 (917)
..|..++ +..++.|-+++|..-+++|+. +|+... .++.| -+.-.+..+......+|+++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa---FDh~G---------FDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA---FDHDG---------FDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS------HHH---------HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh---ccccc---------HHHHHHHHHHHHHHhhccHHHHH
Confidence 4444444 444667889999988888874 344110 00000 01111222333344556655
Q ss_pred ----HHHHHHHHHHhccCCCHHHHH----HHHHHHHHccCHHHHHHHHHHHhhc
Q 002477 533 ----STRAVYERILDLRIATPQIII----NYALLLEEHKYFEDAFRVYERGVKI 578 (917)
Q Consensus 533 ----~A~~~y~~al~~~p~~~~~~~----~~a~~~~~~g~~e~A~~~~eral~~ 578 (917)
.|...|.|-=+++.+.-..|+ +.|..+...|..++|++.|..+.+.
T Consensus 76 ~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 76 QSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455566666666666666664 5788999999999999999998774
No 445
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=21.40 E-value=9.5e+02 Score=25.11 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHh----CCcCCc--HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhh
Q 002477 604 LERARELFENAVET----APADAV--KPLYLQYAKLEED-YGLAKRAMKVYDQATKA 653 (917)
Q Consensus 604 ~e~Ar~lfe~al~~----~p~~~~--~~l~~~~a~~e~~-~g~~~~A~~~y~~al~~ 653 (917)
.++|.+.|++|++. .|+.+- ..+.++|+-|+.. .++.++|..+.++|+..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56888899988864 333211 2367777777665 68888888877776653
No 446
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=21.36 E-value=4.7e+02 Score=21.52 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhcc----CCCChHHHHHHHHHHHHHHhCCCChHH
Q 002477 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF----KYPHVKDIWVTYLSKFVKRYGKTKLER 606 (917)
Q Consensus 531 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f----~~P~~~~lw~~yl~~~~~~~~~~~~e~ 606 (917)
++.|..++.++++ ....|++++|+..|.+|+..| +...+...-..+-.+...+ +++
T Consensus 3 ~~~A~~l~~~Av~---------------~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~ey-----l~R 62 (75)
T cd02678 3 LQKAIELVKKAIE---------------EDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEY-----LDR 62 (75)
T ss_pred HHHHHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH-----HHH
Q ss_pred HHHHHHHH
Q 002477 607 ARELFENA 614 (917)
Q Consensus 607 Ar~lfe~a 614 (917)
|..+-+..
T Consensus 63 aE~LK~~l 70 (75)
T cd02678 63 AEKLKEYL 70 (75)
T ss_pred HHHHHHHH
No 447
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=3e+02 Score=29.14 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=52.7
Q ss_pred HHHHHhhCCCChHHHHHH---HHHHHhCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 002477 16 YEEELLRNPFSLKLWWRY---LVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (917)
Q Consensus 16 ~E~~l~~~P~~~~~W~~y---i~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~e 92 (917)
.++.+.-||.++..|.-- ++......+..-..+-+..+..+|+++-.|. |-.+....+..+ ..-..+......=.
T Consensus 97 ~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~-YR~~vl~~ie~~-~N~S~~k~e~eytt 174 (328)
T COG5536 97 LDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWS-YRRWVLRTIEDL-FNFSDLKHELEYTT 174 (328)
T ss_pred HHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceee-eEeeeeecchhh-ccchhHHHHHHhHH
Confidence 567777789888888433 3333333455555566888888899988887 323322111111 01122333333333
Q ss_pred HHHHhcCCChHHHHHHHH
Q 002477 93 RALVTMHKMPRIWIMYLE 110 (917)
Q Consensus 93 raL~~~p~~~~lw~~y~~ 110 (917)
.++..++.++..|.....
T Consensus 175 ~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 175 SLIETDIYNNSAWHHRYI 192 (328)
T ss_pred HHHhhCCCChHHHHHHHH
Confidence 455667888888877644
No 448
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=21.08 E-value=9.2e+02 Score=24.83 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 002477 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (917)
Q Consensus 515 ~~~w~~~~~l~~~~g~~~~A~~~y~~al~~~p~~ 548 (917)
...-.+|.+++.-.|++++|..-++-+-.+.|+.
T Consensus 35 a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 35 AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred ccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344455555555566666665555555555544
No 449
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=21.04 E-value=1.4e+03 Score=27.03 Aligned_cols=153 Identities=15% Similarity=0.067 Sum_probs=92.6
Q ss_pred CCChHHHHHHHHHHHHhCCcCCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHhcCcch
Q 002477 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG--LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK 678 (917)
Q Consensus 601 ~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g--~~~~A~~~y~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ 678 (917)
++++++|....++-. ....+......-+.+.+..| ....-..+|+++++.+|.....- ...+.. ... ...
T Consensus 322 ~~~l~eal~~~e~~c---~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~l--e~l~~~--~~~-~~~ 393 (547)
T PF14929_consen 322 GGRLKEALNELEKFC---ISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSL--ERLILL--HQK-DYS 393 (547)
T ss_pred cccHHHHHHHHHHhc---cCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHH--HHHHhh--hhh-HHH
Confidence 356777777777643 33334556666778888877 67788899999999999842211 111111 111 334
Q ss_pred HHHHHHHHHHh--C-CCCchHHHHHHHHHHHHHH-cCChhHHHHHHHHHH-------ccCCCCCCHHHHHHHHHHHHHcC
Q 002477 679 TREIYEQAIES--G-LPDKDVKAMCLKYAELEKS-LGEIDRARGIYVFAS-------QFADPRSDTEFWNRWHEFEVNHG 747 (917)
Q Consensus 679 ar~~ye~al~~--~-~p~~~~~~~~l~~a~le~~-~g~~~~Ar~i~~~a~-------~~~~P~~~~~~w~~~~~fe~~~G 747 (917)
+.++.+ +|.. . .|.. ++|+.|+....+ .++++.-.+-...|+ ....-+.+...|........+-.
T Consensus 394 ~~~Lle-~i~~~l~~~~s~---~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~ 469 (547)
T PF14929_consen 394 AEQLLE-MIALHLDLVPSH---PIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIF 469 (547)
T ss_pred HHHHHH-HHHHHhhcCCCc---hHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhh
Confidence 445555 3322 1 2322 689999998777 566654455555554 22222335688998887777666
Q ss_pred CHHHHHHHHHHHhHhhhc
Q 002477 748 NEDTFREMLRIKRSVSAS 765 (917)
Q Consensus 748 ~~~~a~~~lr~~r~~~~~ 765 (917)
..+-.++..+.+..=++.
T Consensus 470 ~~~~~~~~W~~R~~WWp~ 487 (547)
T PF14929_consen 470 DLDWVREEWRSRKDWWPT 487 (547)
T ss_pred hhhchHHHHHHHhhhhhh
Confidence 666666777766666654
No 450
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.38 E-value=5.4e+02 Score=33.31 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------Hhcc-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHhhccC------CC
Q 002477 517 LWTFYVDLEESLGNLESTRAVYERI-------LDLR-IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK------YP 582 (917)
Q Consensus 517 ~w~~~~~l~~~~g~~~~A~~~y~~a-------l~~~-p~~~~~~~~~a~~~~~~g~~e~A~~~~eral~~f~------~P 582 (917)
.+..++.++...|+.+.|...-.++ +..+ |++...+.+++.++...+....|...+.++..+.. .|
T Consensus 975 ~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP 1054 (1236)
T KOG1839|consen 975 KYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP 1054 (1236)
T ss_pred HHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCC
Confidence 3344455566667777666654443 3332 33445667777777777788888888877776521 23
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 002477 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (917)
Q Consensus 583 ~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~ 617 (917)
....+.... ..+. .+.++++.|....+.|+..
T Consensus 1055 ~~a~~~~nl-e~l~--~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1055 PTALSFINL-ELLL--LGVEEADTALRYLESALAK 1086 (1236)
T ss_pred chhhhhhHH-HHHH--hhHHHHHHHHHHHHHHHHH
Confidence 333333322 2221 1335677777777777763
No 451
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=20.24 E-value=4.8e+02 Score=21.64 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHh
Q 002477 605 ERARELFENAVET 617 (917)
Q Consensus 605 e~Ar~lfe~al~~ 617 (917)
++|..++.+|++.
T Consensus 4 ~~A~~l~~~Ave~ 16 (75)
T cd02677 4 EQAAELIRLALEK 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555543
Done!