Query 002477
Match_columns 917
No_of_seqs 431 out of 3715
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 17:01:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002477.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1196-1200//hhsearch_pdb/002477hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 1.0 1 1 351.8 44.7 518 8-694 47-603 (679)
2 4e6h_A MRNA 3'-END-processing 1.0 1 1 313.8 49.7 469 43-764 49-572 (679)
3 2ooe_A Cleavage stimulation fa 1.0 1 1 307.5 44.4 461 48-763 1-493 (530)
4 2ooe_A Cleavage stimulation fa 1.0 1 1 296.8 46.7 442 15-656 1-495 (530)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 256.4 47.3 500 100-742 82-593 (597)
6 2xpi_A Anaphase-promoting comp 1.0 1 1 254.9 42.9 499 137-776 83-593 (597)
7 2uy1_A Cleavage stimulation fa 1.0 1 1 248.7 36.1 376 40-761 28-412 (493)
8 2uy1_A Cleavage stimulation fa 1.0 1 1 240.3 38.2 231 515-796 172-410 (493)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 236.9 45.5 327 377-747 59-387 (388)
10 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 231.1 45.8 354 381-778 29-384 (388)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=351.79 Aligned_cols=518 Identities=13% Similarity=0.205 Sum_probs=364.3
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHH---
Q ss_conf 9998451779999629999288999999998-099568999999999977999899999999999720079999435---
Q 002477 8 YPSEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE--- 83 (917)
Q Consensus 8 ~~~~~~~~yE~~l~~~P~~~~~W~~yi~~~~-~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~--- 83 (917)
++++.-..||..|.+||.|+..|++||++.. .+....++.+|||++..||.++++|..|+.++. ..+.
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~--------~~~~~~~ 118 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF--------DKMEELD 118 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------TC--CCC
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HHCCCCH
T ss_conf 97789999999999786889999999999986182999999999999988998799999999998--------6378505
Q ss_pred HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHHC
Q ss_conf 7899999999999527--9969999999999403547--------8999999999972999-9-8337799999999970
Q 002477 84 YETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFI--------TKARRTFDRALCALPV-T-QHDRIWEIYLRFVEQE 151 (917)
Q Consensus 84 ~~~a~~~~eraL~~~p--~~~~lW~~y~~~~~~~~~~--------~~ar~~~~raL~~~P~-~-~~~~iw~~~l~~~~~~ 151 (917)
+..+..+|+|||..+| .++.+|..|+.|....+.+ +.+|.+|++||..++. + .+..+|..|+.|+...
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999999875477898999999999999855434565013899999999999981966556539999999999863
Q ss_pred CCC--------HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999--------576999999987039998899999999443499999999997338755444577816999999999820
Q 002477 152 GIP--------IETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTT 223 (917)
Q Consensus 152 ~~~--------~~~a~~~~~r~l~~~p~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 223 (917)
... .+.++.+|+|+|. .|.. ...++|..|..+..+
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~-iP~~------------------------------------~~~~~w~~Y~~fe~~ 241 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLC-QPMD------------------------------------CLESMWQRYTQWEQD 241 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTT-SCCS------------------------------------SHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-CCCH------------------------------------HHHHHHHHHHHHHHH
T ss_conf 545767787689999999999982-8637------------------------------------799999999999973
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12324556399999823411462246899999999998175789999999862112422206999999999999999987
Q 002477 224 HATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAK 303 (917)
Q Consensus 224 ~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~v~e~~l~~~~t~~d~~~i~~~y~~fe~~~~~~~ 303 (917)
... .....++. .....|+.|+.+|.+.-.....
T Consensus 242 ~~~----~~a~~~~~---------------------e~~~~y~~Ar~~~~e~~~~~~~---------------------- 274 (679)
T 4e6h_A 242 VNQ----LTARRHIG---------------------ELSAQYMNARSLYQDWLNITKG---------------------- 274 (679)
T ss_dssp HCT----TTHHHHHH---------------------HHHHHHHHHHHHHHHHHHHTTT----------------------
T ss_pred CCC----CHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_conf 583----11889998---------------------7337778899999999999986----------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 24999886532210015886213567655566789998771456567602098899999976212644566667851899
Q 002477 304 MAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPH 383 (917)
Q Consensus 304 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~v~L~~nP~ 383 (917)
++.. ..... .... +...|.. .. ....
T Consensus 275 l~r~--~p~~~-----------------------------------~~~~------------~~~~p~~-~~----~~~~ 300 (679)
T 4e6h_A 275 LKRN--LPITL-----------------------------------NQAT------------ESNLPKP-NE----YDVQ 300 (679)
T ss_dssp CCCC--CCSSS-----------------------------------TTCC------------TTTSCCT-TC----CCHH
T ss_pred HHHC--CCCCC-----------------------------------CCCH------------HCCCCCC-CH----HHHH
T ss_conf 7511--66543-----------------------------------2000------------0258998-66----4899
Q ss_pred CHHHHHHHHHHHCCCC---------HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHCC
Q ss_conf 9787999999871890---------47999999998614988668883899999999999629998999-9999988255
Q 002477 384 NVEQWHRRVKIFEGNP---------TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANAR-VIFDKAVQVN 453 (917)
Q Consensus 384 ~~~~w~~~~~l~~~~~---------~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~Ar-~i~ekal~~~ 453 (917)
.+..|..++.+.+.++ ..+..+|++|+.. .| .+..+|+.||.+++..|+.+.|+ .+|++|+...
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p-----~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC-----FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT-----TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999999984876664101689999999999987-69-----9779999999999862867899999999999868
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHC-CCCH-HHHHHHCCHHHHHHHHHHHHHCCCH
Q ss_conf 8890006999999999999517998999999998759974577765204-9812-4665223189999999999983998
Q 002477 454 YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD-GNEP-VQMKLHKSLRLWTFYVDLEESLGNL 531 (917)
Q Consensus 454 ~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~~~-~~~~-~~~~~~~s~~lw~~y~~l~~~~g~~ 531 (917)
|.+. .+|+.|+.++.+.++++.|+.+|++++...+.......... .+.. .+...+....+|..|++++...|..
T Consensus 375 P~s~----~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 375 PNSA----VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCH
T ss_conf 9877----999999999998488999999999999887877666641167412455541133699999999999870888
Q ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8999999999960-47989999999999998158-999999999986215998909999999999999969998589999
Q 002477 532 ESTRAVYERILDL-RIATPQIIINYALLLEEHKY-FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609 (917)
Q Consensus 532 ~~A~~~ye~al~~-~p~~~~~~~~~a~~~~~~~~-~e~A~~~~erai~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~ 609 (917)
+.|+.+|.++++. .+.++.+|+.+|.++...+. .+.|+++|++|++. +|+...+|..|+.. +.. .++.++||.
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~f-e~~--~~~~~~AR~ 525 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDF-LIY--VNEESQVKS 525 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHH-HHH--HTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH-HHH--CCCHHHHHH
T ss_conf 9999999999973689886999999999999689889999999999987--89953999999999-980--897789999
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999971993-78499999999999981778999999999984199977379999999999984395069999999998
Q 002477 610 LFENAVETAPA-DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (917)
Q Consensus 610 lfe~al~~~p~-~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~iye~al~ 688 (917)
+|++++..+|+ +....+|..|..||...|+.+.+..+++++.+.+|+++.+.++ ...+++...+.|++..|.
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f-------~~ry~~~~~~~i~~~~l~ 598 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF-------TNKYKVLDVNYLQRLELD 598 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH-------HHHTCBTTBCHHHHHTCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH-------HHHHCCCCCHHHHHHHHH
T ss_conf 9999987168878999999999999998699999999999999868997389999-------998467761269998850
Q ss_pred HCCCCC
Q ss_conf 079981
Q 002477 689 SGLPDK 694 (917)
Q Consensus 689 ~~~p~~ 694 (917)
. .+.+
T Consensus 599 ~-~~~~ 603 (679)
T 4e6h_A 599 Y-MVRD 603 (679)
T ss_dssp T-C---
T ss_pred H-CCCC
T ss_conf 1-1345
No 2
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=313.79 Aligned_cols=469 Identities=11% Similarity=0.157 Sum_probs=281.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---HH
Q ss_conf 689999999999779998999999999997200799994357899999999999527996999999999940354---78
Q 002477 43 KKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF---IT 119 (917)
Q Consensus 43 ~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lW~~y~~~~~~~~~---~~ 119 (917)
......||++|..+|.+++.|..|+.++. ..+.+..++.+|+++|..+|.++.+|..|+.+++..++ ++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~--------~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHV--------SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 78999999999978688999999999998--------6182999999999999988998799999999998637850599
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999972999983377999999999709995-------7699999998703999889999999944349999999
Q 002477 120 KARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPI-------ETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAER 192 (917)
Q Consensus 120 ~ar~~~~raL~~~P~~~~~~iw~~~l~~~~~~~~~~-------~~a~~~~~r~l~~~p~~~~~~i~~l~~~~~~~~A~~~ 192 (917)
.++.+|+|||..+|.+.+..+|..|+.|....+... +..+.+|++++...+..
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~-------------------- 180 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIF-------------------- 180 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTT--------------------
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC--------------------
T ss_conf 999999999875477898999999999999855434565013899999999999981966--------------------
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99973387554445778169999999998201232455639999982341146224689999999999817578999999
Q 002477 193 LASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIF 272 (917)
Q Consensus 193 l~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~v~ 272 (917)
......+|..|++++...+... -| ..++.++.+|.+|
T Consensus 181 --------------d~~s~~iW~~Yi~f~~~~~~~~----------------------~~-------eeq~~~~~~R~iy 217 (679)
T 4e6h_A 181 --------------EPKSIQFWNEYLHFLEHWKPVN----------------------KF-------EEQQRVQYIRKLY 217 (679)
T ss_dssp --------------CSSCHHHHHHHHHHHHTCCCCS----------------------HH-------HHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHHCCCCC----------------------CH-------HHHHHHHHHHHHH
T ss_conf --------------5565399999999998635457----------------------67-------7876899999999
Q ss_pred HHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98621124222069999999999999999872499988653221001588621356765556678999877145656760
Q 002477 273 EEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDV 352 (917)
Q Consensus 273 e~~l~~~~t~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 352 (917)
++++. +|.. +...+|..|..||..+ ....
T Consensus 218 ~raL~-iP~~-~~~~~w~~Y~~fe~~~-----~~~~-------------------------------------------- 246 (679)
T 4e6h_A 218 KTLLC-QPMD-CLESMWQRYTQWEQDV-----NQLT-------------------------------------------- 246 (679)
T ss_dssp HHHTT-SCCS-SHHHHHHHHHHHHHHH-----CTTT--------------------------------------------
T ss_pred HHHHH-CCCH-HHHHHHHHHHHHHHHC-----CCCH--------------------------------------------
T ss_conf 99982-8637-7999999999999735-----8311--------------------------------------------
Q ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHC-------------C
Q ss_conf 20988999999762126445666678518999787999999871890479999999------9861-------------4
Q 002477 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTE------AVRT-------------V 413 (917)
Q Consensus 353 ~~~~~~l~~~e~l~~~~~~~~~~v~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~------Ai~~-------------i 413 (917)
.. ..++. ..+.. ..+...|.+ .+.. +
T Consensus 247 --a~---~~~~e---~~~~y---------------------------~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 247 --AR---RHIGE---LSAQY---------------------------MNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp --HH---HHHHH---HHHHH---------------------------HHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred --HH---HHHHH---HHHHH---------------------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
T ss_conf --88---99987---33777---------------------------889999999999998675116654320000258
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 9886-688838999999999996299-98999999998825588900069999999999995179989999999987599
Q 002477 414 DPMK-AVGKPHTLWVAFAKLYETYKD-IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (917)
Q Consensus 414 ~p~~-~~~~~~~lw~~~a~~~~~~g~-~~~Ar~i~ekal~~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~ 491 (917)
++.. .......+|..|+.|+...+. ++..
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~------------------------------------------------- 322 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDD------------------------------------------------- 322 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH-------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH-------------------------------------------------
T ss_conf 9986648999999999999998487666410-------------------------------------------------
Q ss_pred CHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH-H
Q ss_conf 745777652049812466522318999999999998399889999999999604798999999999999815899999-9
Q 002477 492 SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF-R 570 (917)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~s~~lw~~y~~l~~~~g~~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~-~ 570 (917)
.....++.+|++++...|.++.+|+.|+.++...|..++|+ .
T Consensus 323 -------------------------------------~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 323 -------------------------------------LHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf -------------------------------------1689999999999987699779999999999862867899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CC---------CCCHHHHHHH
Q ss_conf 999986215998909999999999999969998589999999999719-----------93---------7849999999
Q 002477 571 VYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA-----------PA---------DAVKPLYLQY 630 (917)
Q Consensus 571 ~~erai~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~-----------p~---------~~~~~l~~~~ 630 (917)
+|++|+.. +|.+..+|..|+. ++.+ .+++++||.+|++++... |. .....+|+.|
T Consensus 366 il~rAi~~--~P~s~~Lwl~~a~-~ee~--~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 366 YLKLGQQC--IPNSAVLAFSLSE-QYEL--NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHH-HHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHH-HHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 99999986--8987799999999-9998--48899999999999988787766664116741245554113369999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999981778999999999984199-9773799999999999843-9506999999999807998128999999999999
Q 002477 631 AKLEEDYGLAKRAMKVYDQATKAVP-NHEKLGMYEIYIARAAEIF-GVPKTREIYEQAIESGLPDKDVKAMCLKYAELEK 708 (917)
Q Consensus 631 a~~e~~~g~~~~A~~iy~~al~~~p-~~~~~~l~~~~i~~~~~~~-~~~~ar~iye~al~~~~p~~~~~~~~l~~a~le~ 708 (917)
+.++.+.|..+.|+.+|.+|++..| ....+++..+.+. ...+ +.+.||.+|+++++. .|++. .+|+.|++++.
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~--~~w~~y~~fe~ 515 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDG--EYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCH--HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHH-CCCCH--HHHHHHHHHHH
T ss_conf 999987088899999999999736898869999999999--99689889999999999987-89953--99999999998
Q ss_pred HCCCHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 82995689999999873699-999789999999999980998999999997757652
Q 002477 709 SLGEIDRARGIYVFASQFAD-PRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSA 764 (917)
Q Consensus 709 ~~g~~~~Ar~i~~~a~~~~~-P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~v~~ 764 (917)
..|+.++||.+|++|+..++ +.....+|..|..||..+|+.+.++.+.+......+
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 089778999999999871688789999999999999986999999999999998689
No 3
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=307.52 Aligned_cols=461 Identities=18% Similarity=0.314 Sum_probs=286.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999997799989999999999972007999943578999999999995279969999999999403547899999999
Q 002477 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDR 127 (917)
Q Consensus 48 ~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~p~~~~lW~~y~~~~~~~~~~~~ar~~~~r 127 (917)
+||++++.+|.+..+|..++... ..+++..++.+|++++..+|.++.+|..|+.+++..++++.|+.+|+|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~---------~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~r 71 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREA---------QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQR 71 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHH---------HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHHHHHH---------HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 93668653977799999999999---------848799999999999987899799999999999866988999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH-CCCCHHHHHH----HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99729999833779999999997-0999576999----999987039998899999999443499999999997338755
Q 002477 128 ALCALPVTQHDRIWEIYLRFVEQ-EGIPIETSLR----VYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202 (917)
Q Consensus 128 aL~~~P~~~~~~iw~~~l~~~~~-~~~~~~~a~~----~~~r~l~~~p~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~ 202 (917)
||..+| +..+|..|+.+... .+.. ..|+. +|++++...+.+
T Consensus 72 al~~~p---~~~lw~~~~~~~~~~~~~~-~~a~~~~~~~~~~al~~~g~~------------------------------ 117 (530)
T 2ooe_A 72 CLMKVL---HIDLWKCYLSYVRETKGKL-PSYKEKMAQAYDFALDKIGME------------------------------ 117 (530)
T ss_dssp HTTTCC---CHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHHHTTTS------------------------------
T ss_pred HHHCCC---CHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCC------------------------------
T ss_conf 872289---8489999999999974650-468999999999999977888------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
Q ss_conf 44457781699999999982012324556399999823411462246899999999998175789999999862112422
Q 002477 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (917)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~v~e~~l~~~~t~ 282 (917)
..+..+|..++.++...+.. + . +...|++++|+.+|++++. .|..
T Consensus 118 -----~~~~~~w~~~~~~~~~~~~~---------------------~-~-------~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 118 -----IMSYQIWVDYINFLKGVEAV---------------------G-S-------YAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp -----TTCHHHHHHHHHHHHHSCCC---------------------S-S-------TTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred -----CCCHHHHHHHHHHHHCCCCC---------------------C-C-------HHHHHHHHHHHHHHHHHHH-CHHH
T ss_conf -----66079999999999607776---------------------5-3-------7877379999999999996-6663
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 20699999999999999998724999886532210015886213567655566789998771456567602098899999
Q 002477 283 RDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARL 362 (917)
Q Consensus 283 ~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 362 (917)
....+|..|..|++.+... ..
T Consensus 163 -~~~~~~~~~~~~e~~~~~~----------------------------------------------------------~~ 183 (530)
T 2ooe_A 163 -NIEQLWRDYNKYEEGINIH----------------------------------------------------------LA 183 (530)
T ss_dssp -THHHHHHHHHHHHHHHCHH----------------------------------------------------------HH
T ss_pred -HHHHHHHHHHHHHHHHCHH----------------------------------------------------------HH
T ss_conf -5999999999999721666----------------------------------------------------------79
Q ss_pred HHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 97621264456666785189997879999998718904799999999861498866888389999999999962999899
Q 002477 363 EHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANA 442 (917)
Q Consensus 363 e~l~~~~~~~~~~v~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~A 442 (917)
+. + +.. ..+++..|
T Consensus 184 ~~------------~--------------------------------l~~----------------------~~~~~~~A 197 (530)
T 2ooe_A 184 KK------------M--------------------------------IED----------------------RSRDYMNA 197 (530)
T ss_dssp HH------------H--------------------------------HHT----------------------THHHHHHH
T ss_pred HH------------H--------------------------------HHH----------------------HHHHHHHH
T ss_conf 99------------9--------------------------------998----------------------52888879
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHH
Q ss_conf 99999988255889000699999999999951799899999999875-99745777652049812466522318999999
Q 002477 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (917)
Q Consensus 443 r~i~ekal~~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~-~~~~~~~~~~~~~~~~~~~~~~~~s~~lw~~y 521 (917)
+.+|...- .....+++++. .||.. .........+|..|
T Consensus 198 ~~~~~~~~----------------------------~~~~~l~~~~~~~~p~~-------------~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 198 RRVAKEYE----------------------------TVMKGLDRNAPSVPPQN-------------TPQEAQQVDMWKKY 236 (530)
T ss_dssp HHHHHHHH----------------------------HHHHHCCSSSCCCCCC---------------CCHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHHHHHCCCCCCCCCCC-------------CHHHHHHHHHHHHH
T ss_conf 99999999----------------------------99997420345589999-------------86579999999999
Q ss_pred HHHHHHC----CC----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHH-C
Q ss_conf 9999983----99----8899999999996047989999999999998-------15899-------99999999862-1
Q 002477 522 VDLEESL----GN----LESTRAVYERILDLRIATPQIIINYALLLEE-------HKYFE-------DAFRVYERGVK-I 578 (917)
Q Consensus 522 ~~l~~~~----g~----~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~-------~~~~e-------~A~~~~erai~-~ 578 (917)
+.++... ++ ...+..+|++++...|.++.+|++++.++.. .|+++ +|+.+|++|+. +
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987097557751268899999999999857897799999999999835465532651221211499999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 599890999999999999996999858999999999971993784-9999999999998177899999999998419997
Q 002477 579 FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (917)
Q Consensus 579 f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~-~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~ 657 (917)
.|++..+|..|+.... ..+++++|+.+|+++++..|. + ..+|..|+.++.+.|..+.|+.+|++|++..|..
T Consensus 317 --~p~~~~l~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 317 --LKKNMLLYFAYADYEE---SRMKYEKVHSIYNRLLAIEDI--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp --CSSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHSSSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred --CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf --8665799999999998---638899999999998576456--830999999999998068899999999997355775
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--CCCCCHHH
Q ss_conf 7379999999999984395069999999998079981289999999999998299568999999987369--99997899
Q 002477 658 EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA--DPRSDTEF 735 (917)
Q Consensus 658 ~~~~l~~~~i~~~~~~~~~~~ar~iye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~--~P~~~~~~ 735 (917)
...++..+++.. ...++.+.|+.+|+++++. .|++. .+|+.|+.++.+.|+.++||.+|+++++.+ +|.....+
T Consensus 390 ~~~~~~~a~~~~-~~~~~~~~A~~~~e~al~~-~p~~~--~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 390 HHVYVTAALMEY-YCSKDKSVAFKIFELGLKK-YGDIP--EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp THHHHHHHHHHH-HHTCCHHHHHHHHHHHHHH-HTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHH-CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 089999999999-8807835999999999987-89978--9999999999867988669999999984157987889999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999998099899999999775765
Q 002477 736 WNRWHEFEVNHGNEDTFREMLRIKRSVS 763 (917)
Q Consensus 736 w~~~~~fe~~~G~~~~a~~~lr~~r~v~ 763 (917)
|..|+.||..+|+.+++..+.+.....-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999998299999999999999877
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=1.00 E-value=1 Score=296.84 Aligned_cols=442 Identities=19% Similarity=0.347 Sum_probs=287.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77999962999928899999999809956899999999997799989999999999972007999943578999999999
Q 002477 15 LYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERA 94 (917)
Q Consensus 15 ~yE~~l~~~P~~~~~W~~yi~~~~~~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~era 94 (917)
.||..|..||.++..|..|++..+.+.+..+..+|+++++.+|.+..+|..|+.++. ..++++.+..+|+||
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~--------~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI--------KAKNYDKVEKLFQRC 72 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHH
T ss_conf 936686539777999999999998487999999999999878997999999999998--------669889999999998
Q ss_pred HHHCCCCHHHHHHHHHHHHHC-CCHHH----HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHC---------CCCHHHHH
Q ss_conf 995279969999999999403-54789----999999999729999-8337799999999970---------99957699
Q 002477 95 LVTMHKMPRIWIMYLETLTSQ-KFITK----ARRTFDRALCALPVT-QHDRIWEIYLRFVEQE---------GIPIETSL 159 (917)
Q Consensus 95 L~~~p~~~~lW~~y~~~~~~~-~~~~~----ar~~~~raL~~~P~~-~~~~iw~~~l~~~~~~---------~~~~~~a~ 159 (917)
+..+| ++.+|..|+.+.... +++.. ++++|++++..++.+ .+..+|..|+.|+... +.. +.|+
T Consensus 73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~a~ 150 (530)
T 2ooe_A 73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI-TAVR 150 (530)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH-HHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHH
T ss_conf 72289-848999999999997465046899999999999997788866079999999999607776537877379-9999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99999870399988999999994434999999999973387554445778169999999998201232455639999982
Q 002477 160 RVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRG 239 (917)
Q Consensus 160 ~~~~r~l~~~p~~~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~ 239 (917)
.+|+++++ .|.+ ....+|..+..+....+... ...++
T Consensus 151 ~~y~~al~-~P~~------------------------------------~~~~~~~~~~~~e~~~~~~~----~~~~l-- 187 (530)
T 2ooe_A 151 RVYQRGCV-NPMI------------------------------------NIEQLWRDYNKYEEGINIHL----AKKMI-- 187 (530)
T ss_dssp HHHHHHTT-SCCT------------------------------------THHHHHHHHHHHHHHHCHHH----HHHHH--
T ss_pred HHHHHHHH-CHHH------------------------------------HHHHHHHHHHHHHHHHCHHH----HHHHH--
T ss_conf 99999996-6663------------------------------------59999999999997216667----99999--
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH------HHHC----CC-CH----HCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34114622468999999999981757899999998------6211----24-22----2069999999999999999872
Q 002477 240 GIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEE------GMMT----VV-TV----RDFSVIFDSYSQFEEIMVSAKM 304 (917)
Q Consensus 240 ~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~v~e~------~l~~----~~-t~----~d~~~i~~~y~~fe~~~~~~~~ 304 (917)
..+.+.++.|+.+|.+ ++.. ++ +. .....+|..|..||..
T Consensus 188 -------------------~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~------ 242 (530)
T 2ooe_A 188 -------------------EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS------ 242 (530)
T ss_dssp -------------------HTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH------
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC------
T ss_conf -------------------9852888879999999999999742034558999986579999999999999870------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 49998865322100158862135676555667899987714565676020988999999762126445666678518999
Q 002477 305 AKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHN 384 (917)
Q Consensus 305 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~~v~L~~nP~~ 384 (917)
+|..
T Consensus 243 ----------------------------------------------------------------------------~~~~ 246 (530)
T 2ooe_A 243 ----------------------------------------------------------------------------NPLR 246 (530)
T ss_dssp ----------------------------------------------------------------------------CSSC
T ss_pred ----------------------------------------------------------------------------CCCC
T ss_conf ----------------------------------------------------------------------------9755
Q ss_pred HHHHHHHHHHHCCC----CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-------CCCHH-------HHHHHH
Q ss_conf 78799999987189----0479999999986149886688838999999999996-------29998-------999999
Q 002477 385 VEQWHRRVKIFEGN----PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-------YKDIA-------NARVIF 446 (917)
Q Consensus 385 ~~~w~~~~~l~~~~----~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~-------~g~~~-------~Ar~i~ 446 (917)
. ++ ...++..|++++.. .| .++.+|..++.++.. .|+++ .|+.+|
T Consensus 247 ~-----------~~~~~~~~~a~~~y~~al~~-~p-----~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 247 T-----------EDQTLITKRVMFAYEQCLLV-LG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp C-----------SCSHHHHHHHHHHHHHHHHH-HT-----TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred C-----------CCCHHHHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 7-----------75126889999999999985-78-----9779999999999983546553265122121149999999
Q ss_pred HHHHH-CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCH-HHHHHHHHH
Q ss_conf 99882-5588900069999999999995179989999999987599745777652049812466522318-999999999
Q 002477 447 DKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL-RLWTFYVDL 524 (917)
Q Consensus 447 ekal~-~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~~~~~~~~~~~~~~s~-~lw~~y~~l 524 (917)
+++++ ..|.+. .+|..++.++.+.|++++|+.+|++++..+| .+. .+|..|+.+
T Consensus 310 ~~Al~~~~p~~~----~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~~~~~~ 365 (530)
T 2ooe_A 310 ERAISTLLKKNM----LLYFAYADYEESRMKYEKVHSIYNRLLAIED--------------------IDPTLVYIQYMKF 365 (530)
T ss_dssp HHHTTTTCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--------------------SCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--------------------CCCHHHHHHHHHH
T ss_conf 999998686657----9999999999863889999999999857645--------------------6830999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99839988999999999960479899999999999-98158999999999986215998909999999999999969998
Q 002477 525 EESLGNLESTRAVYERILDLRIATPQIIINYALLL-EEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (917)
Q Consensus 525 ~~~~g~~~~A~~~ye~al~~~p~~~~~~~~~a~~~-~~~~~~e~A~~~~erai~~f~~P~~~~lw~~yl~~~~~~~~~~~ 603 (917)
+...|+++.|+.+|++++...|.++.++...+.++ ...|+++.|+.+|+++++. +|+...+|..|+.... ..++
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~---~~g~ 440 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLS---HLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHT---TTTC
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH---HCCC
T ss_conf 9980688999999999973557750899999999998807835999999999987--8997899999999998---6798
Q ss_pred HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 589999999999719937--84999999999999817789999999999841999
Q 002477 604 LERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (917)
Q Consensus 604 ~e~Ar~lfe~al~~~p~~--~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~ 656 (917)
.++||.+|++++..+|.. ....+|..|+.|+...|+.+.+..++.++++.+|.
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
T ss_conf 8669999999984157987889999999999999829999999999999987731
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=256.39 Aligned_cols=500 Identities=10% Similarity=-0.007 Sum_probs=374.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC--HHHHH
Q ss_conf 9969999999999403547899999999997299998337799999999970999576999999987039998--89999
Q 002477 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH--IEDFI 177 (917)
Q Consensus 100 ~~~~lW~~y~~~~~~~~~~~~ar~~~~raL~~~P~~~~~~iw~~~l~~~~~~~~~~~~a~~~~~r~l~~~p~~--~~~~i 177 (917)
..+..|...+..+...++++.|..+|++++...| +...|...+......|.+ +.|+.+|++.+...++. +..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDY-ARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCH-HHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8999999999999874583479999999996089---935799999999974769-999999998733545650899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99994434999999999973387554445778169999999998201232455639999982341146224689999999
Q 002477 178 EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLAD 257 (917)
Q Consensus 178 ~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~ 257 (917)
..+...|++++|...+.+..... ..+.. . + .. .... ...+. ....|..++.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~----~--~-~~----~~~~-------------~~~~~-~~~~~~~l~~ 208 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFR----KDEKN----A--N-KL----LMQD-------------GGIKL-EASMCYLRGQ 208 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC-------------------------CCC-------------SSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC----CCCCC----C--C-CC----CCCC-------------CCCCH-HHHHHHHHHH
T ss_conf 99998866999999984248863----22323----4--3-34----3211-------------23512-5899999889
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99981757899999998621124222069999999999999999872499988653221001588621356765556678
Q 002477 258 YYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMA 337 (917)
Q Consensus 258 ~y~~~g~~e~A~~v~e~~l~~~~t~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (917)
.|.+.|++++|+.+|++++...|...+. +...+... ... .
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~---------~~~-----~----------------------- 248 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDAKCYEA---FDQLVSNH---------LLT-----A----------------------- 248 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHH---HHHHHHTT---------CSC-----H-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCHHHHH---HHHHHHHH---------CCC-----C-----------------------
T ss_conf 9998399899999999999729325699---99999850---------346-----1-----------------------
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHC
Q ss_conf 999877145656760209889999---9976212644566667851899978799999987--18904799999999861
Q 002477 338 EFVKKVLNGFWLHDVKDVDLRLAR---LEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRT 412 (917)
Q Consensus 338 ~~~~~i~~~~~~~~~~~~~~~l~~---~e~l~~~~~~~~~~v~L~~nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~ 412 (917)
........ +.......+... ...|...+..+ .++.++++..|.+++..
T Consensus 249 ----------------~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 249 ----------------DEEWDLVLKLNYSTYSKEDAAFL-----------RSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp ----------------HHHHHHHHHSCTHHHHGGGHHHH-----------HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred ----------------HHHHHHHHHCCCCCCCCCHHHHH-----------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf ----------------56789998657742344308899-----------999999999980731399999999876438
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 49886688838999999999996299989999999988255889000699999999999951799899999999875997
Q 002477 413 VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (917)
Q Consensus 413 i~p~~~~~~~~~lw~~~a~~~~~~g~~~~Ar~i~ekal~~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~ 492 (917)
| .+...|..++..|...|+++.|..+|++++...|.++ .+|..++..+...|++++|+.++++++...|
T Consensus 302 --~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 370 (597)
T 2xpi_A 302 --E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL----DVYPLHLASLHESGEKNKLYLISNDLVDRHP 370 (597)
T ss_dssp --G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC----TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred --C-----CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf --8-----3099999999999984689999999999997295537----9999999999982777799999999985183
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 45777652049812466522318999999999998399889999999999604798999999999999815899999999
Q 002477 493 VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572 (917)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~s~~lw~~y~~l~~~~g~~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~ 572 (917)
.+...|..++.++...|++++|..+|+++++..|.++..|..++..+...|++++|...|
T Consensus 371 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 371 --------------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp --------------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf --------------------547999999999998356999999999998729777899999999999757779999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99862159989099999999999999699985899999999997199378499999999999981778999999999984
Q 002477 573 ERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (917)
Q Consensus 573 erai~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~ 652 (917)
++++.. .|.....|...+..+. ..+++++|...|+++++..|. +...|..++..+.+.|++++|..+|+++++
T Consensus 431 ~~~~~~--~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 431 TTAARL--FQGTHLPYLFLGMQHM---QLGNILLANEYLQSSYALFQY--DPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHT--TTTCSHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999986--8134389999999999---857999999999999984888--767999999999981899999999999998
Q ss_pred HCCC---CCH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 1999---773--79999999999984395069999999998079981289999999999998299568999999987369
Q 002477 653 AVPN---HEK--LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727 (917)
Q Consensus 653 ~~p~---~~~--~~l~~~~i~~~~~~~~~~~ar~iye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~ 727 (917)
..|. ++. ...|...+..+...++++.|...|+++++. .|++. ..|..++.++...|+.++|...|+++++.
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 579 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-STNDA--NVHTAIALVYLHKKIPGLAITHLHESLAI- 579 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHC-
T ss_conf 532345453549999999999999804799999999999973-89973--89999999999817899999999999720-
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 999978999999999
Q 002477 728 DPRSDTEFWNRWHEF 742 (917)
Q Consensus 728 ~P~~~~~~w~~~~~f 742 (917)
+|+ +...|......
T Consensus 580 ~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 580 SPN-EIMASDLLKRA 593 (597)
T ss_dssp CTT-CHHHHHHHHHT
T ss_pred CCC-CHHHHHHHHHH
T ss_conf 888-74899999998
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=254.90 Aligned_cols=499 Identities=9% Similarity=0.014 Sum_probs=362.6
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 337799999999970999576999999987039998--899999999443499999999997338755444577816999
Q 002477 137 HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH--IEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLW 214 (917)
Q Consensus 137 ~~~iw~~~l~~~~~~~~~~~~a~~~~~r~l~~~p~~--~~~~i~~l~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~~l~ 214 (917)
....|...+......|.+ +.|..+|++.+...|+. +..++..+...|++++|...+.+++..
T Consensus 83 ~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------- 146 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQY-KCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--------------- 146 (597)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---------------
T ss_pred HHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC---------------
T ss_conf 999999999999874583-4799999999960899357999999999747699999999987335---------------
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHH
Q ss_conf 99999982012324556399999823411462246899999999998175789999999862112422206999999999
Q 002477 215 LELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQ 294 (917)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~v~e~~l~~~~t~~d~~~i~~~y~~ 294 (917)
+.. ...|..++..|.+.|++++|+.+|++.......... +
T Consensus 147 ------------------------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~-- 186 (597)
T 2xpi_A 147 ------------------------------NRS-SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN-------A-- 186 (597)
T ss_dssp ------------------------------GTC-HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------
T ss_pred ------------------------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------C--
T ss_conf ------------------------------456-508999999999886699999998424886322323-------4--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 99999998724999886532210015886213567655566789998771456567602098899999976212644566
Q 002477 295 FEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELAN 374 (917)
Q Consensus 295 fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~e~l~~~~~~~~~ 374 (917)
+. +.... ... ..+.. .. ...+......++.+.++..|++
T Consensus 187 ~~-------~~~~~---~~~----------~~~~~--------~~---~~l~~~~~~~g~~~~A~~~~~~---------- 225 (597)
T 2xpi_A 187 NK-------LLMQD---GGI----------KLEAS--------MC---YLRGQVYTNLSNFDRAKECYKE---------- 225 (597)
T ss_dssp -----------CCC---SSC----------CHHHH--------HH---HHHHHHHHHTTCHHHHHHHHHH----------
T ss_pred CC-------CCCCC---CCC----------CHHHH--------HH---HHHHHHHHHCCCHHHHHHHHHH----------
T ss_conf 33-------43211---235----------12589--------99---9988999983998999999999----------
Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH-----HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6678518999787999999871890479999-----99998614988668883899999999999629998999999998
Q 002477 375 SVLLRQNPHNVEQWHRRVKIFEGNPTKQILT-----YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449 (917)
Q Consensus 375 ~v~L~~nP~~~~~w~~~~~l~~~~~~~a~~~-----y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~Ar~i~eka 449 (917)
+++.+|.+...|..++.++.......... +.+.... ++ .....+|..++..|...|+++.|+.+|+++
T Consensus 226 --~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 226 --ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE-DA----AFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp --HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG-GH----HHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred --HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC-HH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf --99729325699999998503461567899986577423443-08----899999999999980731399999999876
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 82558890006999999999999517998999999998759974577765204981246652231899999999999839
Q 002477 450 VQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (917)
Q Consensus 450 l~~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~~~~~~~~~~~~~~s~~lw~~y~~l~~~~g 529 (917)
+.. +.++ .+|..++.++.+.|++++|+.+|++++...| .+...|..++.++...|
T Consensus 299 ~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 299 NGL-EKSS----DLLLCKADTLFVRSRFIDVLAITTKILEIDP--------------------YNLDVYPLHLASLHESG 353 (597)
T ss_dssp TTG-GGCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCCTTHHHHHHHHHHHT
T ss_pred HCC-CCHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--------------------CCHHHHHHHHHHHHHHC
T ss_conf 438-8309----9999999999984689999999999997295--------------------53799999999999827
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98899999999996047989999999999998158999999999986215998909999999999999969998589999
Q 002477 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609 (917)
Q Consensus 530 ~~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~erai~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~ 609 (917)
+++.|..+|++++...|.++.+|..++.++...|++++|..+|++++.. .|.....|+..+..+. ..+++++|..
T Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~---~~g~~~~A~~ 428 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFA---IEGEHDQAIS 428 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH---HCCCHHHHHH
T ss_conf 7779999999998518354799999999999835699999999999872--9777899999999999---7577799999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999971993784999999999999817789999999999841999773799999999999843950699999999980
Q 002477 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (917)
Q Consensus 610 lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~iye~al~~ 689 (917)
+|+++++..|. +...|..++..+...|++++|..+|+++++..|.+.. .|...+......+.+++|..+|+++++.
T Consensus 429 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 429 AYTTAARLFQG--THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL--LLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTTTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999986813--4389999999999857999999999999984888767--9999999999818999999999999985
Q ss_pred C-----CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 7-----99812899999999999982995689999999873699999789999999999980998999999997757652
Q 002477 690 G-----LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSA 764 (917)
Q Consensus 690 ~-----~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~v~~ 764 (917)
. .|+. ....|..++.++...|+++.|..+|+++++. +|. +...|......+...|+.+.+.++++......+
T Consensus 505 ~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 505 VKKTQSNEKP-WAATWANLGHAYRKLKMYDAAIDALNQGLLL-STN-DANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHSCCCSGG-GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHCCCCCHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 3234545354-9999999999999804799999999999973-899-738999999999981789999999999972088
Q ss_pred CCCCHHHHHHHH
Q ss_conf 331012234688
Q 002477 765 SYSQTHFILPEY 776 (917)
Q Consensus 765 ~~~~~~~~~~~~ 776 (917)
..+..+...+..
T Consensus 582 ~~~~~~~~l~~~ 593 (597)
T 2xpi_A 582 NEIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
T ss_conf 874899999998
No 7
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=248.73 Aligned_cols=376 Identities=12% Similarity=0.136 Sum_probs=211.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH---
Q ss_conf 99568999999999977999899999999999720079999435789999999999952---799699999999994---
Q 002477 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM---HKMPRIWIMYLETLT--- 113 (917)
Q Consensus 40 ~~~~~~~~~yeral~~~P~s~~lW~~yl~~~~~~~~~~~~~~~~~~~a~~~~eraL~~~---p~~~~lW~~y~~~~~--- 113 (917)
+.+..+..+|+|||..+| |+++|..|+.+..... ...+.++.+|++|+... +.++.+|..|+.|+.
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~-------~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVS-------QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-----------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCH
T ss_conf 999999999999856699-9799999999999847-------56999999999999876888661899999999997360
Q ss_pred -HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf -0354789999999999729999833779999999997099957699999998703999889999999944349999999
Q 002477 114 -SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAER 192 (917)
Q Consensus 114 -~~~~~~~ar~~~~raL~~~P~~~~~~iw~~~l~~~~~~~~~~~~a~~~~~r~l~~~p~~~~~~i~~l~~~~~~~~A~~~ 192 (917)
+++.++.+|++|+|||. .|..++.++|..|..|+...+. .++..+.++... .+
T Consensus 100 ~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~--~~~~~~~~~~~~-----------------~y------ 153 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNK--ITGKKIVGDTLP-----------------IF------ 153 (493)
T ss_dssp SHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCH--HHHHHHHHHHHH-----------------HH------
T ss_pred HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH-----------------HH------
T ss_conf 656799999999999982-7354699999999999987461--017889999817-----------------88------
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99973387554445778169999999998201232455639999982341146224689999999999817578999999
Q 002477 193 LASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIF 272 (917)
Q Consensus 193 l~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~~~~lw~~la~~y~~~g~~e~A~~v~ 272 (917)
..|+.+|
T Consensus 154 -------------------------------------------------------------------------~~ar~~y 160 (493)
T 2uy1_A 154 -------------------------------------------------------------------------QSSFQRY 160 (493)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
T ss_conf -------------------------------------------------------------------------9999999
Q ss_pred HHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98621124222069999999999999999872499988653221001588621356765556678999877145656760
Q 002477 273 EEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDV 352 (917)
Q Consensus 273 e~~l~~~~t~~d~~~i~~~y~~fe~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 352 (917)
+++....+.. -..+|..|+.||++ ...+ . .+
T Consensus 161 ~~~~~~~~~~--s~~~W~~y~~~E~~------~~~~-----~-----------------------------------~~- 191 (493)
T 2uy1_A 161 QQIQPLIRGW--SVKNAARLIDLEME------NGMK-----L-----------------------------------GG- 191 (493)
T ss_dssp HHHHHHHHTC--SHHHHHHHHHHHHT------CTTC-----C-----------------------------------CH-
T ss_pred HHHHHHHHHC--CHHHHHHHHHHHHC------CCCC-----C-----------------------------------CC-
T ss_conf 9999887434--29999999999862------9865-----7-----------------------------------62-
Q ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 20988999999762126445666678518999787999999871890479999999986149886688838999999999
Q 002477 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL 432 (917)
Q Consensus 353 ~~~~~~l~~~e~l~~~~~~~~~~v~L~~nP~~~~~w~~~~~l~~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~ 432 (917)
. +....+..+|++++.. .| ..+.+|+.|+.+
T Consensus 192 --~-----------------------------------------~~~~Rv~~~ye~al~~-~p-----~~~~lW~~ya~~ 222 (493)
T 2uy1_A 192 --R-----------------------------------------PHESRMHFIHNYILDS-FY-----YAEEVYFFYSEY 222 (493)
T ss_dssp --H-----------------------------------------HHHHHHHHHHHHHHHH-TT-----TCHHHHHHHHHH
T ss_pred --H-----------------------------------------HHHHHHHHHHHHHHHC-CC-----CCHHHHHHHHHH
T ss_conf --1-----------------------------------------2599999999999872-89-----989999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99629998999999998825588900069999999999995179989999999987599745777652049812466522
Q 002477 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (917)
Q Consensus 433 ~~~~g~~~~Ar~i~ekal~~~~~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~~~~~~~~~~~~~ 512 (917)
+...|+.+.|+.+|++|+.. |.+. .+|..|+.+... ++ ++++..
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~----~l~~~y~~~~e~----~~---~~~~l~------------------------ 266 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGM----FLSLYYGLVMDE----EA---VYGDLK------------------------ 266 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSS----HHHHHHHHHTTC----TH---HHHHHH------------------------
T ss_pred HHHCCCHHHHHHHHHHHHHC-CCCH----HHHHHHHHHCCH----HH---HHHHHH------------------------
T ss_conf 98759989999999998718-9969----999998765105----68---999999------------------------
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 31899999999999839988999999999960479899999999999981589999999999862159989099999999
Q 002477 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (917)
Q Consensus 513 ~s~~lw~~y~~l~~~~g~~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~erai~~f~~P~~~~lw~~yl 592 (917)
++.+. ... .+
T Consensus 267 --------------------------~~~~~-~~~---------------------------------~~---------- 276 (493)
T 2uy1_A 267 --------------------------RKYSM-GEA---------------------------------ES---------- 276 (493)
T ss_dssp --------------------------HHTC--------------------------------------------------
T ss_pred --------------------------HHHHH-HCC---------------------------------CH----------
T ss_conf --------------------------99986-111---------------------------------01----------
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
Q ss_conf 9999996999858999999999971993784999999999999817789999999999841999-773799999999999
Q 002477 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN-HEKLGMYEIYIARAA 671 (917)
Q Consensus 593 ~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~-~~~~~l~~~~i~~~~ 671 (917)
+. . .+......+|+.|+.++.+.|..++|+.+|++| + .|. ....+++...+. .
T Consensus 277 -------~~--~-------------~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE--~ 330 (493)
T 2uy1_A 277 -------AE--K-------------VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIE--Y 330 (493)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHH--H
T ss_pred -------HH--H-------------HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-H-CCCCCHHHHHHHHHHH--H
T ss_conf -------22--3-------------204561899999999998717889999999986-2-7788859999999999--9
Q ss_pred HHC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 843-9506999999999807998128999999999999829956899999998736999997899999999999809989
Q 002477 672 EIF-GVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNED 750 (917)
Q Consensus 672 ~~~-~~~~ar~iye~al~~~~p~~~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~ 750 (917)
..+ +.+.||.+|+.+++. .|+.. .+|+.|++++...|+.++||.+|+++. . ...+|..|.+||..+|+.+
T Consensus 331 ~~~~d~~~ar~ife~al~~-~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~-----k-~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLK-HPDST--LLKEEFFLFLLRIGDEENARALFKRLE-----K-TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHH-CTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC-----C-BHHHHHHHHHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHCCCHH
T ss_conf 8789968999999999987-89978--999999999987598777999999999-----8-9999999999999779999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999997757
Q 002477 751 TFREMLRIKRS 761 (917)
Q Consensus 751 ~a~~~lr~~r~ 761 (917)
+++.+++.+..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 8
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=240.35 Aligned_cols=231 Identities=16% Similarity=0.078 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHCC--C-----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 899999999999839--9-----889999999999604798999999999999815899999999998621599890999
Q 002477 515 LRLWTFYVDLEESLG--N-----LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587 (917)
Q Consensus 515 ~~lw~~y~~l~~~~g--~-----~~~A~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~erai~~f~~P~~~~l 587 (917)
..+|..|++++.+.+ . .+.+..+|++++...|.++.+|+.|+.++...|+.+.|+.+|++|+.. |.+..+
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCHHH
T ss_conf 99999999998629865762125999999999998728998999999999998759989999999998718---996999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999999699985899999999997199378499999999999981778999999999984199977379999999
Q 002477 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (917)
Q Consensus 588 w~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~~~~~l~~~~i 667 (917)
|..|+. +. . .++. |++..+..-. .+...|. ..+......+|..|+
T Consensus 249 ~~~y~~-~~---e---~~~~---~~~l~~~~~~------------~~~~~~~-------------~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 249 SLYYGL-VM---D---EEAV---YGDLKRKYSM------------GEAESAE-------------KVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHH-HT---T---CTHH---HHHHHHHTC-----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHH-HC---C---HHHH---HHHHHHHHHH------------HCCCHHH-------------HHCCCCCHHHHHHHH
T ss_conf 999876-51---0---5689---9999999986------------1110122-------------320456189999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99998439506999999999807998128999999999999829-95689999999873699999789999999999980
Q 002477 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLG-EIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (917)
Q Consensus 668 ~~~~~~~~~~~ar~iye~al~~~~p~~~~~~~~l~~a~le~~~g-~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~ 746 (917)
.+....++.+.||.+|++| + .|.. ...+|+.+|.+|...| +.++||.+|+.+++. .|+ .+.+|..|++||...
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~--~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~-~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-G--NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPD-STLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-T--TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH-H--CCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHC
T ss_conf 9998717889999999986-2--7788-85999999999998789968999999999987-899-789999999999875
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHC
Q ss_conf 99899999999775765233101223468877554322126865675421
Q 002477 747 GNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLSIDDAKDKLKQA 796 (917)
Q Consensus 747 G~~~~a~~~lr~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 796 (917)
|+.+++|.++... . ....+|..+.++.... |+.+.++..+.++
T Consensus 368 ~~~~~aR~l~er~--~--k~~~lw~~~~~fE~~~---G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 368 GDEENARALFKRL--E--KTSRMWDSMIEYEFMV---GSMELFRELVDQK 410 (493)
T ss_dssp TCHHHHHHHHHHS--C--CBHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--H--HHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_conf 9877799999999--9--8999999999999977---9999999999999
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=236.91 Aligned_cols=327 Identities=17% Similarity=0.216 Sum_probs=219.5
Q ss_pred HHHHCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 7851899978799999987--18904799999999861498866888389999999999962999899999999882558
Q 002477 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (917)
Q Consensus 377 ~L~~nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~Ar~i~ekal~~~~ 454 (917)
.++.+|.+...|..++..+ .++.++++..|.+++. ++| .....|..++..+...|+++.|...|+++++.+|
T Consensus 59 a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR-LKP-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCC-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9761978669999999999877999999999999987-496-----5399999999999985899999999999997598
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 89000699999999999951799899999999875997457776520498124665223189999999999983998899
Q 002477 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (917)
Q Consensus 455 ~~~~~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~~~~~~~~~~~~~~s~~lw~~y~~l~~~~g~~~~A 534 (917)
.+. .+|..++.++...|++++|...|++++...| .+...|..++.++...|+++.|
T Consensus 133 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 133 DLY----CVRSDLGNLLKALGRLEEAKACYLKAIETQP--------------------NFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp TCT----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHTTTCHHHH
T ss_pred CCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHCCCHHHH
T ss_conf 968----9999999999984689999999999987298--------------------9789999999999985999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999604798999999999999815899999999998621599890999999999999996999858999999999
Q 002477 535 RAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENA 614 (917)
Q Consensus 535 ~~~ye~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~erai~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~a 614 (917)
...|++++...|.++.++.+++..+...|.+++|...|++++.+ .|+...+|...+..+. ..+++++|...|+++
T Consensus 189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYY---EQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHH
T ss_conf 99999998559886799999999999857899999999999852--9687899999999999---868899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 97199378499999999999981778999999999984199977379999999999984395069999999998079981
Q 002477 615 VETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (917)
Q Consensus 615 l~~~p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~iye~al~~~~p~~ 694 (917)
++..|. ....|..++..+...|++++|+..|+++++..|.+...+ ..........+++++|...|+++++. .|+.
T Consensus 264 l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~ 338 (388)
T 1w3b_A 264 IELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL--NNLANIKREQGNIEEAVRLYRKALEV-FPEF 338 (388)
T ss_dssp HHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHTTTCHHHHHHHHHHHTTS-CTTC
T ss_pred HHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHC-CCCC
T ss_conf 864999--889999999999986997999999999986494449999--99999999848999999999999860-9873
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 28999999999999829956899999998736999997899999999999809
Q 002477 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHG 747 (917)
Q Consensus 695 ~~~~~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G 747 (917)
. ..+..++.++...|+++.|...|+++++. +|. ....|..........|
T Consensus 339 ~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 A--AAHSNLASVLQQQGKLQEALMHYKEAIRI-SPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp H--HHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTT-CHHHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHCC
T ss_conf 9--99977999999868889999999999861-999-7899985999998745
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=231.10 Aligned_cols=354 Identities=15% Similarity=0.168 Sum_probs=262.5
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 899978799999987--189047999999998614988668883899999999999629998999999998825588900
Q 002477 381 NPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (917)
Q Consensus 381 nP~~~~~w~~~~~l~--~~~~~~a~~~y~~Ai~~i~p~~~~~~~~~lw~~~a~~~~~~g~~~~Ar~i~ekal~~~~~~~~ 458 (917)
+|.+...+..++.++ .++.+++...++.++.. +| .....|..+|..+...|+++.|...|++++..+|.++
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~- 101 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NP-----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI- 101 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH-
T ss_conf 9788999999999999868999999999999761-97-----8669999999999877999999999999987496539-
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 06999999999999517998999999998759974577765204981246652231899999999999839988999999
Q 002477 459 HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (917)
Q Consensus 459 ~l~~~w~~~a~~~~~~~~~~~A~~~l~ral~~~~~~~~~~~~~~~~~~~~~~~~~s~~lw~~y~~l~~~~g~~~~A~~~y 538 (917)
..|..++..+...|++++|+..+++++...| .+...|..++.++...|++++|...|
T Consensus 102 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 102 ---DGYINLAAALVAAGDMEGAVQAYVSALQYNP--------------------DLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp ---HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT--------------------TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf ---9999999999985899999999999997598--------------------96899999999999846899999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 99996047989999999999998158999999999986215998909999999999999969998589999999999719
Q 002477 539 ERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (917)
Q Consensus 539 e~al~~~p~~~~~~~~~a~~~~~~~~~e~A~~~~erai~~f~~P~~~~lw~~yl~~~~~~~~~~~~e~Ar~lfe~al~~~ 618 (917)
++++...|.++.+|.+++.++...|++++|...|++++.+ .|.....|......+. ..+++++|...|++++...
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLK---EARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---TTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHC
T ss_conf 9998729897899999999999859999999999999855--9886799999999999---8578999999999998529
Q ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 93784999999999999817789999999999841999773799999999999843950699999999980799812899
Q 002477 619 PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698 (917)
Q Consensus 619 p~~~~~~l~~~~a~~e~~~g~~~~A~~iy~~al~~~p~~~~~~l~~~~i~~~~~~~~~~~ar~iye~al~~~~p~~~~~~ 698 (917)
|. ...++..++..+...|+++.|+..|+++++..|.++.. +..........+++++|...|+++++. .|++. .
T Consensus 234 p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~--~ 306 (388)
T 1w3b_A 234 PN--HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSVAEAEDCYNTALRL-CPTHA--D 306 (388)
T ss_dssp TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCH--H
T ss_pred CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCH--H
T ss_conf 68--78999999999998688999999999998649998899--999999999869979999999999864-94449--9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999998299568999999987369999978999999999998099899999999775765233101223468877
Q 002477 699 MCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLM 778 (917)
Q Consensus 699 ~~l~~a~le~~~g~~~~Ar~i~~~a~~~~~P~~~~~~w~~~~~fe~~~G~~~~a~~~lr~~r~v~~~~~~~~~~~~~~~~ 778 (917)
.+..++.++...|+++.|...|+++++. +|. ....|..........|+.+.+...++......+.+..+++..+..+.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEV-FPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999999848999999999999860-987-39999779999998688899999999998619997899985999998
Done!