Query 002480
Match_columns 917
No_of_seqs 380 out of 1756
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 00:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 6E-284 1E-288 2471.6 67.5 910 1-914 1-917 (1094)
2 PLN02400 cellulose synthase 100.0 1E-282 2E-287 2470.3 67.6 891 1-914 1-906 (1085)
3 PLN02638 cellulose synthase A 100.0 1E-268 2E-273 2349.4 67.6 877 22-914 3-901 (1079)
4 PLN02189 cellulose synthase 100.0 3E-260 5E-265 2272.5 67.5 854 1-914 1-863 (1040)
5 PLN02915 cellulose synthase A 100.0 3E-259 6E-264 2264.4 62.5 826 30-914 9-865 (1044)
6 PLN02195 cellulose synthase A 100.0 2E-239 5E-244 2084.8 62.7 791 33-914 3-798 (977)
7 PLN02248 cellulose synthase-li 100.0 3E-211 6E-216 1856.8 58.3 786 4-912 89-956 (1135)
8 PF03552 Cellulose_synt: Cellu 100.0 2E-173 3E-178 1497.7 33.0 542 368-914 1-547 (720)
9 PLN02190 cellulose synthase-li 100.0 2E-167 5E-172 1449.1 47.9 559 269-900 6-568 (756)
10 PLN02893 Cellulose synthase-li 100.0 2E-160 3E-165 1398.0 49.1 553 269-913 9-568 (734)
11 TIGR03030 CelA cellulose synth 100.0 3.3E-56 7.2E-61 531.5 37.0 377 289-911 57-446 (713)
12 PRK11498 bcsA cellulose syntha 100.0 4.9E-56 1.1E-60 532.8 35.0 358 291-912 189-558 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 4E-46 8.6E-51 324.6 4.4 80 28-107 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 7.3E-36 1.6E-40 354.4 34.3 354 287-880 40-411 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 2.3E-34 5E-39 305.9 22.3 182 533-840 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 1.5E-31 3.2E-36 297.7 26.9 233 365-844 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 2.1E-29 4.5E-34 286.2 29.9 232 363-845 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 2.8E-28 6.1E-33 276.9 28.5 297 362-910 45-355 (439)
19 PRK11204 N-glycosyltransferase 100.0 1.9E-27 4E-32 266.3 28.5 230 363-845 51-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 5.2E-26 1.1E-30 262.6 28.3 265 364-870 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 4.6E-26 1E-30 231.0 19.8 229 366-842 1-234 (234)
22 cd06437 CESA_CaSu_A2 Cellulose 99.9 1.6E-25 3.4E-30 229.8 21.4 228 366-838 1-232 (232)
23 PRK11234 nfrB bacteriophage N4 99.9 6.3E-25 1.4E-29 262.7 27.9 241 363-843 60-334 (727)
24 cd06427 CESA_like_2 CESA_like_ 99.9 2.9E-24 6.3E-29 222.7 20.8 232 366-844 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 6.8E-24 1.5E-28 217.1 22.7 174 535-846 58-235 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 3.8E-24 8.3E-29 217.4 8.0 224 366-837 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.9 4.4E-20 9.5E-25 219.7 25.9 172 548-843 139-342 (703)
28 cd04190 Chitin_synth_C C-termi 99.9 1.4E-21 3E-26 204.8 11.5 166 565-840 71-243 (244)
29 TIGR03472 HpnI hopanoid biosyn 99.8 2.7E-19 5.8E-24 199.4 26.2 230 363-839 38-273 (373)
30 cd04192 GT_2_like_e Subfamily 99.8 4.6E-20 1E-24 185.8 17.4 226 370-837 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 1E-19 2.2E-24 183.2 16.9 194 366-836 1-194 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 1.9E-18 4.1E-23 176.2 18.2 168 548-840 62-234 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.8 8.7E-18 1.9E-22 173.6 19.2 127 362-614 25-151 (251)
34 TIGR03469 HonB hopene-associat 99.7 1.4E-16 3E-21 178.5 24.5 133 362-608 36-169 (384)
35 cd02525 Succinoglycan_BP_ExoA 99.7 3.6E-16 7.8E-21 159.5 19.8 54 789-844 180-233 (249)
36 COG2943 MdoH Membrane glycosyl 99.7 5E-15 1.1E-19 167.5 29.5 278 363-876 141-427 (736)
37 PF13632 Glyco_trans_2_3: Glyc 99.7 3.6E-16 7.8E-21 156.4 15.5 138 570-838 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.6 1.8E-14 3.9E-19 145.3 13.9 115 534-655 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.5 2.1E-13 4.5E-18 135.9 12.4 102 548-655 61-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 3.5E-12 7.7E-17 127.0 16.4 121 366-610 1-122 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.4 2.2E-11 4.8E-16 121.5 17.1 64 535-612 57-121 (201)
42 PF13506 Glyco_transf_21: Glyc 99.3 1.8E-11 3.9E-16 124.2 12.1 60 548-615 15-74 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 1.8E-10 3.8E-15 113.1 15.4 55 549-612 61-116 (202)
44 cd02510 pp-GalNAc-T pp-GalNAc- 99.2 2E-10 4.3E-15 123.8 16.9 109 370-595 2-110 (299)
45 cd02522 GT_2_like_a GT_2_like_ 99.2 3.7E-10 8E-15 114.1 17.6 40 368-413 1-40 (221)
46 cd04196 GT_2_like_d Subfamily 99.2 1.8E-10 4E-15 115.0 13.6 56 548-612 64-120 (214)
47 cd06420 GT2_Chondriotin_Pol_N 99.2 9.4E-10 2E-14 107.9 16.7 42 549-596 65-106 (182)
48 cd04186 GT_2_like_c Subfamily 99.1 9.3E-10 2E-14 104.9 15.1 52 548-608 59-111 (166)
49 PLN02726 dolichyl-phosphate be 99.1 3.6E-09 7.9E-14 110.6 18.0 60 535-608 70-129 (243)
50 cd06913 beta3GnTL1_like Beta 1 99.1 2.6E-09 5.6E-14 109.1 16.5 42 370-416 1-42 (219)
51 PF03142 Chitin_synth_2: Chiti 99.1 1.9E-08 4.2E-13 117.6 25.0 54 788-843 324-379 (527)
52 cd06442 DPM1_like DPM1_like re 99.0 6E-09 1.3E-13 105.6 16.4 60 535-608 55-114 (224)
53 cd02526 GT2_RfbF_like RfbF is 99.0 2.2E-09 4.8E-14 109.9 13.0 50 534-590 48-97 (237)
54 cd06423 CESA_like CESA_like is 99.0 3E-09 6.5E-14 100.0 12.8 62 535-610 55-117 (180)
55 cd04185 GT_2_like_b Subfamily 99.0 7.5E-09 1.6E-13 103.9 16.1 60 535-605 53-112 (202)
56 PF14570 zf-RING_4: RING/Ubox 99.0 1.7E-10 3.7E-15 94.3 2.9 48 39-89 1-48 (48)
57 PF00535 Glycos_transf_2: Glyc 99.0 4E-10 8.7E-15 106.4 5.5 111 534-656 54-166 (169)
58 PRK10073 putative glycosyl tra 98.8 7.7E-08 1.7E-12 106.6 15.9 110 364-596 4-113 (328)
59 cd04188 DPG_synthase DPG_synth 98.8 9E-08 1.9E-12 97.3 14.9 52 550-610 69-120 (211)
60 PRK10018 putative glycosyl tra 98.7 3.5E-07 7.6E-12 99.6 18.0 52 534-595 61-112 (279)
61 cd04179 DPM_DPG-synthase_like 98.7 8.7E-08 1.9E-12 94.1 11.1 65 535-613 56-120 (185)
62 TIGR01556 rhamnosyltran L-rham 98.7 4.6E-07 9.9E-12 96.8 15.6 64 534-606 46-109 (281)
63 PRK10063 putative glycosyl tra 98.6 1E-06 2.2E-11 94.0 16.8 48 366-417 1-49 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.5 1.4E-06 3E-11 80.0 13.4 52 548-608 62-114 (156)
65 PF10111 Glyco_tranf_2_2: Glyc 98.5 2.7E-06 5.9E-11 92.1 16.6 63 549-617 74-136 (281)
66 cd04187 DPM1_like_bac Bacteria 98.5 8.7E-07 1.9E-11 87.7 10.8 105 534-656 56-160 (181)
67 KOG2571 Chitin synthase/hyalur 98.5 1.4E-06 3.1E-11 105.9 14.4 48 788-837 549-596 (862)
68 PTZ00260 dolichyl-phosphate be 98.4 5.6E-06 1.2E-10 92.3 16.6 42 549-595 148-189 (333)
69 COG1216 Predicted glycosyltran 98.4 1.5E-05 3.3E-10 87.1 19.2 67 534-612 57-125 (305)
70 PRK13915 putative glucosyl-3-p 98.2 6.9E-06 1.5E-10 90.6 11.7 51 549-607 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.7 0.0003 6.5E-09 78.3 12.1 41 549-594 76-116 (325)
72 COG0463 WcaA Glycosyltransfera 97.4 0.0012 2.5E-08 61.3 10.1 45 365-415 2-46 (291)
73 cd02511 Beta4Glucosyltransfera 97.3 0.0016 3.5E-08 68.0 11.1 43 549-596 57-99 (229)
74 KOG2547 Ceramide glucosyltrans 97.3 0.0042 9.1E-08 70.2 14.8 159 548-836 155-314 (431)
75 COG5175 MOT2 Transcriptional r 96.8 0.00059 1.3E-08 75.4 2.1 48 38-88 16-63 (480)
76 PF14446 Prok-RING_1: Prokaryo 95.8 0.0068 1.5E-07 51.4 2.5 45 36-88 5-51 (54)
77 cd02514 GT13_GLCNAC-TI GT13_GL 95.7 0.13 2.8E-06 58.3 12.9 41 369-413 3-43 (334)
78 TIGR00570 cdk7 CDK-activating 95.5 0.014 3.1E-07 64.9 4.6 56 35-92 2-57 (309)
79 cd00162 RING RING-finger (Real 89.0 0.43 9.4E-06 36.4 3.1 44 38-87 1-44 (45)
80 PF05290 Baculo_IE-1: Baculovi 88.1 0.32 6.9E-06 48.4 2.3 53 36-92 80-135 (140)
81 KOG2978 Dolichol-phosphate man 87.2 4.4 9.4E-05 43.1 9.9 52 534-595 64-115 (238)
82 smart00504 Ubox Modified RING 83.2 1.3 2.9E-05 37.2 3.4 44 38-89 3-46 (63)
83 KOG2977 Glycosyltransferase [G 82.8 9.9 0.00021 42.7 10.6 41 550-594 144-186 (323)
84 PF02364 Glucan_synthase: 1,3- 80.7 4.6 0.0001 50.7 8.1 73 788-866 409-482 (817)
85 PHA02929 N1R/p28-like protein; 77.1 2.9 6.3E-05 45.6 4.3 55 34-89 172-227 (238)
86 PRK14559 putative protein seri 76.9 1.1 2.5E-05 54.9 1.4 24 66-90 30-53 (645)
87 KOG0823 Predicted E3 ubiquitin 74.4 3 6.6E-05 45.1 3.5 47 35-89 46-95 (230)
88 PF13639 zf-RING_2: Ring finge 74.3 2.5 5.4E-05 33.6 2.2 43 38-85 2-44 (44)
89 smart00659 RPOLCX RNA polymera 72.0 2.4 5.3E-05 34.7 1.7 27 37-65 3-29 (44)
90 PLN03208 E3 ubiquitin-protein 71.8 3.9 8.5E-05 43.3 3.6 54 29-89 11-79 (193)
91 PF14447 Prok-RING_4: Prokaryo 71.0 1.8 4E-05 37.1 0.8 47 35-91 6-52 (55)
92 PHA02862 5L protein; Provision 70.8 2.5 5.5E-05 42.8 1.9 49 36-90 2-54 (156)
93 PF03604 DNA_RNApol_7kD: DNA d 70.5 3.1 6.8E-05 32.0 1.9 26 38-65 2-27 (32)
94 PF03966 Trm112p: Trm112p-like 68.1 1.1 2.4E-05 39.4 -1.2 25 67-91 42-66 (68)
95 KOG3800 Predicted E3 ubiquitin 66.5 4.6 9.9E-05 45.1 2.9 53 37-91 1-53 (300)
96 PHA02825 LAP/PHD finger-like p 66.3 4.9 0.00011 41.4 2.9 51 35-91 7-61 (162)
97 smart00184 RING Ring finger. E 65.9 6.1 0.00013 28.8 2.6 39 39-84 1-39 (39)
98 KOG2068 MOT2 transcription fac 65.4 4.7 0.0001 45.7 2.8 52 36-91 249-300 (327)
99 PF02318 FYVE_2: FYVE-type zin 62.8 1.3 2.8E-05 43.0 -1.9 48 34-84 52-100 (118)
100 KOG2932 E3 ubiquitin ligase in 59.7 5 0.00011 45.1 1.7 45 49-93 84-138 (389)
101 PF14471 DUF4428: Domain of un 59.1 5.3 0.00011 33.7 1.3 28 38-71 1-28 (51)
102 PF13712 Glyco_tranf_2_5: Glyc 58.3 13 0.00029 39.6 4.5 49 549-605 40-89 (217)
103 COG5114 Histone acetyltransfer 57.6 3.7 8E-05 46.2 0.3 36 38-77 7-43 (432)
104 PF00097 zf-C3HC4: Zinc finger 56.5 8.9 0.00019 29.7 2.2 40 39-84 1-41 (41)
105 smart00249 PHD PHD zinc finger 56.4 6.8 0.00015 30.2 1.5 43 38-84 1-47 (47)
106 PF13920 zf-C3HC4_3: Zinc fing 56.0 11 0.00024 30.8 2.8 45 38-90 4-49 (50)
107 KOG0006 E3 ubiquitin-protein l 56.0 9.2 0.0002 43.2 2.9 63 31-94 310-413 (446)
108 PF13923 zf-C3HC4_2: Zinc fing 55.4 11 0.00025 29.2 2.6 39 39-84 1-39 (39)
109 PRK00420 hypothetical protein; 55.3 5 0.00011 39.2 0.7 29 56-90 24-52 (112)
110 PF07282 OrfB_Zn_ribbon: Putat 53.6 9.3 0.0002 33.2 2.1 33 35-68 27-59 (69)
111 PRK15103 paraquat-inducible me 52.3 11 0.00023 44.4 2.9 30 53-91 219-248 (419)
112 smart00291 ZnF_ZZ Zinc-binding 52.2 12 0.00026 30.2 2.4 37 36-77 4-41 (44)
113 PF13704 Glyco_tranf_2_4: Glyc 51.0 51 0.0011 29.8 6.6 29 383-415 5-33 (97)
114 PRK12495 hypothetical protein; 50.7 8 0.00017 41.7 1.4 29 55-90 42-70 (226)
115 PHA02926 zinc finger-like prot 49.5 19 0.00041 39.2 3.9 61 34-94 168-235 (242)
116 TIGR00155 pqiA_fam integral me 48.1 11 0.00023 44.2 2.0 30 54-91 214-243 (403)
117 PRK04023 DNA polymerase II lar 48.0 12 0.00025 48.1 2.4 45 34-89 624-674 (1121)
118 PRK00398 rpoP DNA-directed RNA 47.7 12 0.00027 30.4 1.7 28 37-65 4-31 (46)
119 KOG3737 Predicted polypeptide 46.5 75 0.0016 37.4 8.2 48 362-412 151-198 (603)
120 PRK07220 DNA topoisomerase I; 45.4 11 0.00023 47.5 1.5 48 37-86 590-643 (740)
121 COG0551 TopA Zn-finger domain 43.5 15 0.00033 36.3 2.1 49 34-86 15-68 (140)
122 cd02249 ZZ Zinc finger, ZZ typ 43.4 19 0.00041 29.3 2.2 31 38-73 2-33 (46)
123 KOG0311 Predicted E3 ubiquitin 42.5 4.2 9E-05 46.5 -2.3 50 33-88 39-89 (381)
124 KOG0457 Histone acetyltransfer 42.2 11 0.00024 44.2 0.9 50 36-92 14-64 (438)
125 cd02335 ZZ_ADA2 Zinc finger, Z 41.8 22 0.00047 29.5 2.3 30 38-71 2-32 (49)
126 KOG2068 MOT2 transcription fac 40.4 11 0.00025 42.7 0.7 30 62-91 1-32 (327)
127 cd00350 rubredoxin_like Rubred 40.3 9.4 0.0002 29.2 0.0 19 71-89 10-28 (33)
128 PF07649 C1_3: C1-like domain; 40.2 17 0.00037 27.0 1.4 28 38-69 2-29 (30)
129 KOG1941 Acetylcholine receptor 39.4 9.9 0.00021 44.0 0.0 69 35-106 364-438 (518)
130 PF11077 DUF2616: Protein of u 39.0 10 0.00022 39.7 0.0 26 39-68 55-81 (173)
131 PRK14503 mannosyl-3-phosphogly 38.8 69 0.0015 37.3 6.4 40 548-590 142-181 (393)
132 PF14634 zf-RING_5: zinc-RING 38.7 32 0.0007 27.5 2.8 43 39-86 2-44 (44)
133 PF06906 DUF1272: Protein of u 38.6 34 0.00074 29.8 3.1 47 38-90 7-53 (57)
134 TIGR02443 conserved hypothetic 38.5 20 0.00044 31.4 1.7 31 34-64 7-40 (59)
135 PRK11827 hypothetical protein; 38.4 21 0.00045 31.4 1.8 32 64-95 12-43 (60)
136 PF09484 Cas_TM1802: CRISPR-as 38.2 17 0.00037 44.4 1.7 41 33-73 195-251 (593)
137 PRK12380 hydrogenase nickel in 38.2 10 0.00023 36.7 -0.0 27 55-88 70-96 (113)
138 PF00628 PHD: PHD-finger; Int 38.2 24 0.00053 28.6 2.1 45 38-86 1-50 (51)
139 PRK04296 thymidine kinase; Pro 37.7 16 0.00034 37.9 1.2 35 37-71 141-186 (190)
140 TIGR02460 osmo_MPGsynth mannos 37.2 90 0.0019 36.3 7.0 39 548-589 141-179 (381)
141 PRK14973 DNA topoisomerase I; 35.5 23 0.00051 45.7 2.4 48 37-87 589-644 (936)
142 COG1996 RPC10 DNA-directed RNA 35.4 20 0.00043 30.4 1.2 29 36-65 6-34 (49)
143 TIGR00599 rad18 DNA repair pro 35.4 29 0.00063 40.7 2.9 53 29-89 18-71 (397)
144 PF01155 HypA: Hydrogenase exp 34.5 7.6 0.00016 37.5 -1.6 30 55-91 70-99 (113)
145 PF13896 Glyco_transf_49: Glyc 34.0 44 0.00096 37.8 4.1 40 565-605 125-164 (317)
146 PF11238 DUF3039: Protein of u 34.0 13 0.00028 32.4 -0.1 12 79-90 45-56 (58)
147 KOG3736 Polypeptide N-acetylga 33.7 55 0.0012 40.2 5.0 49 362-413 138-186 (578)
148 PF00265 TK: Thymidine kinase; 33.4 14 0.0003 38.4 -0.1 34 37-70 138-176 (176)
149 PRK07219 DNA topoisomerase I; 33.3 23 0.0005 45.0 1.9 53 36-91 688-746 (822)
150 PRK00564 hypA hydrogenase nick 33.2 15 0.00033 35.8 0.2 30 55-91 71-101 (117)
151 COG4739 Uncharacterized protei 32.7 25 0.00053 36.1 1.5 45 45-89 77-121 (182)
152 COG2191 Formylmethanofuran deh 32.0 25 0.00054 37.7 1.5 26 36-71 172-201 (206)
153 PF03452 Anp1: Anp1; InterPro 31.5 5E+02 0.011 29.2 11.5 55 363-421 22-78 (269)
154 cd00730 rubredoxin Rubredoxin; 31.3 14 0.00029 31.3 -0.4 7 80-86 36-42 (50)
155 PF03884 DUF329: Domain of unk 31.3 29 0.00062 30.2 1.5 33 75-107 15-53 (57)
156 PF08274 PhnA_Zn_Ribbon: PhnA 30.7 20 0.00044 27.3 0.5 24 38-63 4-27 (30)
157 PRK11595 DNA utilization prote 30.7 32 0.00069 36.9 2.1 39 36-87 5-43 (227)
158 TIGR00155 pqiA_fam integral me 30.1 34 0.00075 40.1 2.4 35 54-92 12-47 (403)
159 PTZ00293 thymidine kinase; Pro 30.1 24 0.00052 38.0 1.1 35 37-71 138-177 (211)
160 TIGR00100 hypA hydrogenase nic 29.9 20 0.00043 34.8 0.4 29 56-91 71-99 (115)
161 PF11781 RRN7: RNA polymerase 29.4 29 0.00062 27.4 1.1 23 39-63 11-33 (36)
162 cd02336 ZZ_RSC8 Zinc finger, Z 29.4 39 0.00083 28.0 1.9 35 38-77 2-37 (45)
163 PRK03681 hypA hydrogenase nick 29.3 18 0.0004 35.1 0.1 28 56-90 71-99 (114)
164 PF14446 Prok-RING_1: Prokaryo 29.2 21 0.00045 30.8 0.3 16 75-90 18-33 (54)
165 cd00899 b4GalT Beta-4-Galactos 29.1 46 0.001 36.1 3.0 79 734-842 112-200 (219)
166 PRK14873 primosome assembly pr 28.0 40 0.00086 42.1 2.6 11 78-88 422-432 (665)
167 KOG2824 Glutaredoxin-related p 27.5 35 0.00076 38.2 1.8 22 33-62 226-247 (281)
168 COG4391 Uncharacterized protei 27.2 24 0.00051 31.2 0.3 17 74-90 44-60 (62)
169 COG1813 Predicted transcriptio 27.1 36 0.00077 35.5 1.7 37 39-79 6-42 (165)
170 KOG3738 Predicted polypeptide 26.8 82 0.0018 37.2 4.6 49 363-414 121-169 (559)
171 TIGR01206 lysW lysine biosynth 26.6 45 0.00097 28.7 1.9 13 38-50 4-16 (54)
172 PF04641 Rtf2: Rtf2 RING-finge 26.5 54 0.0012 36.0 3.0 50 35-90 112-162 (260)
173 PRK14890 putative Zn-ribbon RN 26.4 77 0.0017 27.9 3.3 50 35-86 6-56 (59)
174 COG0068 HypF Hydrogenase matur 26.2 51 0.0011 41.3 3.0 60 34-93 99-190 (750)
175 KOG2177 Predicted E3 ubiquitin 26.2 34 0.00074 35.5 1.4 43 35-85 12-54 (386)
176 TIGR02556 cas_TM1802 CRISPR-as 26.2 40 0.00087 41.2 2.1 41 36-77 170-222 (555)
177 PRK06319 DNA topoisomerase I/S 26.1 39 0.00084 43.4 2.1 56 35-93 591-660 (860)
178 TIGR00595 priA primosomal prot 25.7 31 0.00068 41.4 1.1 50 48-97 205-259 (505)
179 PRK14502 bifunctional mannosyl 25.5 1.7E+02 0.0037 36.9 7.2 38 548-588 146-183 (694)
180 PF09526 DUF2387: Probable met 25.2 45 0.00097 30.2 1.7 31 34-64 6-39 (71)
181 PF13248 zf-ribbon_3: zinc-rib 25.1 19 0.00042 26.1 -0.5 14 74-87 12-25 (26)
182 smart00744 RINGv The RING-vari 24.9 92 0.002 25.9 3.4 45 38-85 1-49 (49)
183 PF13719 zinc_ribbon_5: zinc-r 24.9 30 0.00066 27.1 0.6 11 80-90 4-14 (37)
184 PF07754 DUF1610: Domain of un 24.9 57 0.0012 23.8 1.9 24 39-63 1-24 (24)
185 KOG0916 1,3-beta-glucan syntha 24.8 1.1E+02 0.0024 41.1 5.6 73 788-866 1173-1246(1679)
186 PRK08359 transcription factor; 24.7 25 0.00054 36.9 0.1 34 37-74 7-42 (176)
187 KOG3507 DNA-directed RNA polym 24.6 34 0.00073 30.1 0.8 28 36-65 20-47 (62)
188 PF13240 zinc_ribbon_2: zinc-r 24.4 19 0.00042 25.7 -0.6 12 75-86 10-21 (23)
189 PF03107 C1_2: C1 domain; Int 24.3 50 0.0011 24.7 1.6 28 38-69 2-29 (30)
190 PF12773 DZR: Double zinc ribb 24.2 49 0.0011 26.9 1.7 12 36-47 12-23 (50)
191 COG4707 Uncharacterized protei 24.1 32 0.0007 32.9 0.7 44 470-524 20-70 (107)
192 PF13717 zinc_ribbon_4: zinc-r 23.8 33 0.00072 26.9 0.6 10 80-89 4-13 (36)
193 cd00065 FYVE FYVE domain; Zinc 23.7 35 0.00076 28.3 0.8 38 36-76 2-39 (57)
194 PF00643 zf-B_box: B-box zinc 23.5 51 0.0011 25.8 1.6 31 36-73 3-33 (42)
195 PRK06393 rpoE DNA-directed RNA 23.3 37 0.00079 30.3 0.8 23 54-87 4-26 (64)
196 PF14354 Lar_restr_allev: Rest 23.2 51 0.0011 27.9 1.6 26 38-63 5-37 (61)
197 COG2888 Predicted Zn-ribbon RN 23.0 76 0.0017 28.0 2.6 48 36-85 9-57 (61)
198 PF09623 Cas_NE0113: CRISPR-as 22.8 6.4E+02 0.014 27.6 10.2 60 370-438 4-63 (224)
199 PF02411 MerT: MerT mercuric t 22.4 1.7E+02 0.0038 28.8 5.3 53 285-337 47-115 (116)
200 KOG2857 Predicted MYND Zn-fing 22.2 45 0.00098 34.0 1.3 45 36-92 5-50 (157)
201 COG0551 TopA Zn-finger domain 21.9 35 0.00077 33.8 0.5 52 34-89 58-112 (140)
202 TIGR03830 CxxCG_CxxCG_HTH puta 21.9 36 0.00077 32.5 0.5 40 39-88 1-41 (127)
203 PRK13751 putative mercuric tra 21.2 1.8E+02 0.0038 28.9 5.0 51 285-335 47-113 (116)
204 PRK14714 DNA polymerase II lar 21.0 47 0.001 44.0 1.4 48 37-91 668-722 (1337)
205 COG1326 Uncharacterized archae 20.9 50 0.0011 35.3 1.4 26 38-63 8-38 (201)
206 PRK10220 hypothetical protein; 20.6 71 0.0015 31.3 2.2 25 64-89 7-31 (111)
207 TIGR00686 phnA alkylphosphonat 20.5 62 0.0013 31.7 1.8 25 64-89 6-30 (109)
208 COG1645 Uncharacterized Zn-fin 20.5 42 0.00092 33.8 0.7 27 56-89 29-55 (131)
209 PF13901 DUF4206: Domain of un 20.3 86 0.0019 33.3 3.0 51 33-89 149-200 (202)
210 PRK15103 paraquat-inducible me 20.2 47 0.001 39.2 1.1 32 56-91 11-43 (419)
211 cd03031 GRX_GRX_like Glutaredo 20.1 45 0.00098 33.9 0.8 43 35-86 98-141 (147)
212 PRK05582 DNA topoisomerase I; 20.1 60 0.0013 40.3 2.0 51 36-90 571-623 (650)
213 KOG1734 Predicted RING-contain 20.0 41 0.00088 37.6 0.5 53 29-88 217-280 (328)
214 PRK09382 ispDF bifunctional 2- 20.0 2.1E+02 0.0046 33.3 6.3 55 554-612 86-159 (378)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=6.4e-284 Score=2471.55 Aligned_cols=910 Identities=85% Similarity=1.409 Sum_probs=843.3
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 002480 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (917)
Q Consensus 1 me~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~ 80 (917)
||+++|||||||||||||+|++|++.++||++++++||||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999777789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCccccccccccCC-CCCchhhHHHhhhhccccCCCCCccccCccCCCccccccccC
Q 002480 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDIND-RKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (917)
Q Consensus 81 CPqCktrYkr~kGsprv~gd~ee~~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (917)
|||||||||||||||||+||||||++||+||||+|.+ +++.++++|+|+||+|++|++.+.....+..+.+. ....+
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDS--APPGS 158 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCcccccccccccccccc--CCCcC
Confidence 9999999999999999999999999999999999873 23347889999999999998876221100011111 01125
Q ss_pred CCcccccCC--CCCCCCCcccccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhh
Q 002480 160 EIPLLTYGN--EDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN 237 (917)
Q Consensus 160 ~~~~l~~~~--~~~~~~~~~h~~~~~~~~g~g~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~ 237 (917)
++|+|++++ +|++ +++|++++++.+|.||||||+||+|+++++++|.+||+||+++||||||+||||||+||+||+
T Consensus 159 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~ 236 (1094)
T PLN02436 159 QIPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN 236 (1094)
T ss_pred CCcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence 789999986 6655 677887788888889999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCcCCccCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCchhhH
Q 002480 238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL 317 (917)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a~~l 317 (917)
+|++++.+..+..+|++++.+.+++|++++|++++||+||+++++++|+|||++++++|+++++||+||+++++.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~ 316 (1094)
T PLN02436 237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL 316 (1094)
T ss_pred hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 55555544322212344432334678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCC
Q 002480 318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDY 397 (917)
Q Consensus 318 wl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dY 397 (917)
|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+||||||||+||
T Consensus 317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 396 (1094)
T PLN02436 317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDY 396 (1094)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHH
Q 002480 398 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFK 477 (917)
Q Consensus 398 P~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~k 477 (917)
|+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|++++|++|+|++|||+|||||||||
T Consensus 397 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K 476 (1094)
T PLN02436 397 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFK 476 (1094)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHH
Q 002480 478 VRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNA 557 (917)
Q Consensus 478 vri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNa 557 (917)
+|||+|+++++++|+++|+|+|||+|||++++|||+||||||+++|+.|.+|++||+|||||||||||++||+||||||+
T Consensus 477 ~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNa 556 (1094)
T PLN02436 477 VKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNS 556 (1094)
T ss_pred HHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhh
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhcccccc
Q 002480 558 LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 637 (917)
Q Consensus 558 llrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg 637 (917)
|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||
T Consensus 557 LlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDG 636 (1094)
T PLN02436 557 LIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 636 (1094)
T ss_pred hhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCC----ccCCcchhhhhhhhhhhhc
Q 002480 638 IQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSN----KKNKDTSKQIYALENIEEG 713 (917)
Q Consensus 638 ~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 713 (917)
+|||+||||||+|||+||||++||...+.+...++||++|||+||+++++++++++. .++.....+++++++++++
T Consensus 637 lqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1094)
T PLN02436 637 IQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEG 716 (1094)
T ss_pred CCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999877766678889999999999988764432221 1233455678889999999
Q ss_pred ccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchH
Q 002480 714 IEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDI 793 (917)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~ 793 (917)
++++++|.+..++++.++++||+|++|++|++++.||.+...+++++++||+|||||+||++|+||+||||+|+|+|||+
T Consensus 717 ~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv 796 (1094)
T PLN02436 717 IEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDI 796 (1094)
T ss_pred cccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhh
Q 002480 794 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPI 873 (917)
Q Consensus 794 ~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl 873 (917)
.||++||++|||++|++|+++||.|+||+|+.+++.||+|||+|++||++++++|+|+++.++|+|+|||+|+++++||+
T Consensus 797 ~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l 876 (1094)
T PLN02436 797 LTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPW 876 (1094)
T ss_pred HHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999999988778999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHhh
Q 002480 874 TSIPLIAYCTLPAICLLTGKFIVPEVISDCISFSISDCISF 914 (917)
Q Consensus 874 ~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~i~~~~~~ 914 (917)
++++.++|+++|++|||+|++|||+++..++.+|+.+++++
T Consensus 877 ~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~ 917 (1094)
T PLN02436 877 TSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISI 917 (1094)
T ss_pred HHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888887777654
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=9.9e-283 Score=2470.26 Aligned_cols=891 Identities=66% Similarity=1.165 Sum_probs=816.1
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 002480 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (917)
Q Consensus 1 me~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~ 80 (917)
||+++|||||||||||||+|++|++.++||++++++||||||||+||+|+|||+|||||||||||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCccccccccccCCCCCchhhHHHhhhhccccCCCCCccccCccCCCccccccc-cC
Q 002480 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSV-AQ 159 (917)
Q Consensus 81 CPqCktrYkr~kGsprv~gd~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (917)
|||||||||||||||||+|||||||+||+||||+|..++++.. +++. |++.+.. .|+++ .+
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~-------~~~~-~~~~~~~----------~~~~~~~~ 142 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKAR-------HQWQ-GEDIELS----------SSSRHESQ 142 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhcccccccccc-------cccc-ccCcccc----------CcccccCC
Confidence 9999999999999999999999999999999999964322110 1122 4443311 11122 25
Q ss_pred CCcccccCC---CCCCCCCcccccccCCCC---CCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHH
Q 002480 160 EIPLLTYGN---EDVGISSDKHALIIPPFM---GRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWK 233 (917)
Q Consensus 160 ~~~~l~~~~---~~~~~~~~~h~~~~~~~~---g~g~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk 233 (917)
++|+||++| ||+++++++|++++++.+ |.||||||+||+||.+|+++|.|||+||+++||||||+||||||+||
T Consensus 143 ~~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk 222 (1085)
T PLN02400 143 PIPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWK 222 (1085)
T ss_pred CCccccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHH
Confidence 789999986 899988777766666543 45799999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhcccCCC-CCCCCCCCCCCCCCCCcCCccCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccC
Q 002480 234 KKQNEKLQVVKHQGG-NGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVN 312 (917)
Q Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~ 312 (917)
+||+|++.++.+... ..||+.++++.+++|+++||++++||+||++|++++|+|||++++++|+++++||+||++|++.
T Consensus 223 ~~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~ 302 (1085)
T PLN02400 223 LKQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVK 302 (1085)
T ss_pred hhhhhhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 999877655544321 1122444333446789999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHH
Q 002480 313 DAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (917)
Q Consensus 313 ~a~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~ 392 (917)
+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+||||||
T Consensus 303 ~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSi 382 (1085)
T PLN02400 303 DAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSI 382 (1085)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHH
Q 002480 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (917)
Q Consensus 393 la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kre 472 (917)
||+|||++||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+||||
T Consensus 383 LA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~e 462 (1085)
T PLN02400 383 LAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKRE 462 (1085)
T ss_pred HhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCch
Q 002480 473 YEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKA 552 (917)
Q Consensus 473 Yee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KA 552 (917)
|||||+|||+|+++++++|+++|+|+|||+|||+++||||+|||||++++|+.|.+|++||+|||||||||||++||+||
T Consensus 463 YEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KA 542 (1085)
T PLN02400 463 YEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKA 542 (1085)
T ss_pred HHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhc
Q 002480 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM 632 (917)
Q Consensus 553 GALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~ 632 (917)
||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|
T Consensus 543 GAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~ 622 (1085)
T PLN02400 543 GAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINL 622 (1085)
T ss_pred hhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCC-------ccCCcchhhhh
Q 002480 633 KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSN-------KKNKDTSKQIY 705 (917)
Q Consensus 633 ~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-------~~~~~~~~~~~ 705 (917)
+|+||+|||+||||||+|||+||||++||..++.....+. |++||++++++|+.+.. .+..+.+.+++
T Consensus 623 ~GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1085)
T PLN02400 623 KGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII-----VKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIF 697 (1085)
T ss_pred cccccCCCccccccCcceeeeeeccCCCcccccccccccc-----ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999876543222111 24567766554322111 12344567899
Q ss_pred hhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCee
Q 002480 706 ALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWI 785 (917)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~ 785 (917)
++++++++++++++|.+.++++++++++||+|++|++|++++.||.+...+++++++||+|||||+||++|+||+||||+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwi 777 (1085)
T PLN02400 698 NMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWI 777 (1085)
T ss_pred cccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCee
Confidence 99999999999999999899999999999999999999999999999989999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHh
Q 002480 786 YGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSY 865 (917)
Q Consensus 786 y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Y 865 (917)
|+|+|||+.||++||++|||++|++|++++|.|+||+|+.+++.||+|||+|++||++++++|+|+++.++|+++|||+|
T Consensus 778 YGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Y 857 (1085)
T PLN02400 778 YGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAY 857 (1085)
T ss_pred ccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999877789999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHhh
Q 002480 866 INSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFSISDCISF 914 (917)
Q Consensus 866 l~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~i~~~~~~ 914 (917)
+++++||++++++++|+++|++|||+|++|||.++..++.||+.+++++
T Consensus 858 l~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~ 906 (1085)
T PLN02400 858 INTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISI 906 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888877554
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.1e-268 Score=2349.40 Aligned_cols=877 Identities=67% Similarity=1.178 Sum_probs=792.8
Q ss_pred cccccccccccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCC
Q 002480 22 ADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDE 101 (917)
Q Consensus 22 ~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~kGsprv~gd~ 101 (917)
.|++.++||++++++|+||||||+||+|+|||+|||||||||||||||||||||||||+|||||||||||||||||+|||
T Consensus 3 ~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDe 82 (1079)
T PLN02638 3 SEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDE 82 (1079)
T ss_pred CCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccc
Confidence 36677789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-ccccccccccCCC--CCchhhHHHhhhhccccCCCCCccccCccCCCccccccccCCCcccccCC---CCCCCCC
Q 002480 102 EEDD-TDDLENEFDINDR--KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGN---EDVGISS 175 (917)
Q Consensus 102 ee~~-~dd~e~ef~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~ 175 (917)
|||+ +||+||||+|.++ +..++++|+|+||+|++|++.|...+ +.+...+.+++|+||+|| +|+++++
T Consensus 83 eed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 156 (1079)
T PLN02638 83 EEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAP------NYDKEVSHNHIPLLTNGQSVSGELSAAS 156 (1079)
T ss_pred cccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccc------cccccCCCCCCcccccCccccCccCCCC
Confidence 8886 8999999998632 23377899999999999998662210 011011125789999976 8888766
Q ss_pred cccccccCCCCCCCcccccCCCCCCC-CCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCC----CCC
Q 002480 176 DKHALIIPPFMGRGKRIHPMSFPDGF-MTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQG----GNG 250 (917)
Q Consensus 176 ~~h~~~~~~~~g~g~~v~~~~~~d~~-~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~----~~~ 250 (917)
++|++++++.+ .|||| ||+|+. +|+++|+|||+||+++|||||++||||||+||+||+||+.++.+.. +.+
T Consensus 157 ~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~ 232 (1079)
T PLN02638 157 PERLSMASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRG 232 (1079)
T ss_pred CccccccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccC
Confidence 56555555543 57998 999965 7899999999999999999999999999999999987765444422 222
Q ss_pred CCCCCC-CCCCCCCCcCCccCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCchhhHHHHHHHHHHHHH
Q 002480 251 GGNNDG-DGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFA 329 (917)
Q Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a~~lwl~~~i~Ei~~a 329 (917)
|+++++ ++.+++|+++++++++||+||++|++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFa 312 (1079)
T PLN02638 233 GGDIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFA 312 (1079)
T ss_pred cCCCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 234432 2334689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccchhhhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecC
Q 002480 330 VSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDD 409 (917)
Q Consensus 330 ~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDD 409 (917)
|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+||||||||+|||++||+||||||
T Consensus 313 f~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDD 392 (1079)
T PLN02638 313 LSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDD 392 (1079)
T ss_pred HHHHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecC
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002480 410 GAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQK 489 (917)
Q Consensus 410 G~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~k 489 (917)
|+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||++++++++
T Consensus 393 GgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~ 472 (1079)
T PLN02638 393 GAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQK 472 (1079)
T ss_pred CchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCC
Q 002480 490 VPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAP 569 (917)
Q Consensus 490 vp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp 569 (917)
+|+++|+|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+||||||+|||||
T Consensus 473 ~p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP 552 (1079)
T PLN02638 473 VPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP 552 (1079)
T ss_pred cCCccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcc
Q 002480 570 YLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCV 649 (917)
Q Consensus 570 ~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv 649 (917)
||||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+
T Consensus 553 fILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~ 632 (1079)
T PLN02638 553 FLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCV 632 (1079)
T ss_pred eEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccc-cccC-----C--ccCCcchhhhhhhhhhhhcccc--ccc
Q 002480 650 FRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSK-KGKS-----N--KKNKDTSKQIYALENIEEGIEG--IDN 719 (917)
Q Consensus 650 ~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~--~~~ 719 (917)
|||+||||++||...+.. .+..+++||++.++++ +.++ + .++.....+++++++++++.++ +++
T Consensus 633 fRR~ALYG~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1079)
T PLN02638 633 FNRTALYGYEPPIKPKHK------KPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDD 706 (1079)
T ss_pred eeehhhcCcCCccccccc------ccccccccccccccccccccchhhccccccccccccccccccccccccccccccch
Confidence 999999999998653221 1111224565533221 1111 0 1223344567788888887775 566
Q ss_pred ccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHH
Q 002480 720 EKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKM 799 (917)
Q Consensus 720 ~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rL 799 (917)
+++.++++..++++||+|++|++|++++.+|.+...+++++++||++||||+||++|+||+||||+|+|+|||+.||++|
T Consensus 707 ~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rL 786 (1079)
T PLN02638 707 EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKM 786 (1079)
T ss_pred hhhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHH
Confidence 77889999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHH
Q 002480 800 HCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLI 879 (917)
Q Consensus 800 h~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~l 879 (917)
|++|||++|++|+++||.|+||+|+.+++.||+|||+|++||++++++|+|++++++|+++|||+|+++++||+++++++
T Consensus 787 H~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~l 866 (1079)
T PLN02638 787 HARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLL 866 (1079)
T ss_pred HcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999988778999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHhh
Q 002480 880 AYCTLPAICLLTGKFIVPEVISDCISFSISDCISF 914 (917)
Q Consensus 880 iy~llP~l~LltG~~iip~~s~~~~~~~i~~~~~~ 914 (917)
+|+++|++|||+|++|+|+++..++.+|+.+++++
T Consensus 867 iY~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~ 901 (1079)
T PLN02638 867 LYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSI 901 (1079)
T ss_pred HHHHHHHHHHHcCCccCCCccchHHHHHHHHHHHH
Confidence 99999999999999999999998888877776655
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=2.5e-260 Score=2272.49 Aligned_cols=854 Identities=68% Similarity=1.200 Sum_probs=776.6
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCC
Q 002480 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (917)
Q Consensus 1 me~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~ 80 (917)
||+++|||||||||||||++++| + +.||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~-~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-E-EPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-c-CCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999987 4 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCccccccccccCCC-CCchhhHHHhhhhccccCCCCCccccCccCCCccccccccC
Q 002480 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDR-KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (917)
Q Consensus 81 CPqCktrYkr~kGsprv~gd~ee~~~dd~e~ef~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (917)
|||||||||||||||||+||||||++||+||||+|.+. ++.++++|+|+||+|++|++.+... +.+
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 145 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDE-------------NNQ 145 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCC-------------CcC
Confidence 99999999999999999999999999999999999643 3347889999999999998865221 125
Q ss_pred CCcccccCC-----CCCCCCC--cccccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHH
Q 002480 160 EIPLLTYGN-----EDVGISS--DKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEW 232 (917)
Q Consensus 160 ~~~~l~~~~-----~~~~~~~--~~h~~~~~~~~g~g~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w 232 (917)
++|+|++++ +|++..+ .+|++++++. .||||||+||+|. ++|+|||+||++ ||||||+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~--------wk~rv~~w 211 (1040)
T PLN02189 146 FPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSEP----GSAKWDEKKEGG--------WKERMDDW 211 (1040)
T ss_pred CCcccccCccccccCCcCccccccccccccCCc--ccCccCcccccCC----CcccCCcccccc--------HHHHHHHH
Confidence 688999865 6665211 1344455554 5899999999985 458999999975 99999999
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCCccCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccC
Q 002480 233 KKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVN 312 (917)
Q Consensus 233 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~ 312 (917)
|+||+ ..++ ++ +.+++|+++++++++||+||+++++++|+|||++++++|+++++||+||++|++.
T Consensus 212 k~~~~-------~~~~------~~-~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~ 277 (1040)
T PLN02189 212 KMQQG-------NLGP------DP-DDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVH 277 (1040)
T ss_pred Hhhcc-------cCCC------CC-CCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence 99995 1110 11 2235677888999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHH
Q 002480 313 DAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (917)
Q Consensus 313 ~a~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~ 392 (917)
+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+||||||
T Consensus 278 ~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSi 357 (1040)
T PLN02189 278 DAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSI 357 (1040)
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHH
Q 002480 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (917)
Q Consensus 393 la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kre 472 (917)
||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+||||
T Consensus 358 LA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~e 437 (1040)
T PLN02189 358 LAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKRE 437 (1040)
T ss_pred HhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCch
Q 002480 473 YEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKA 552 (917)
Q Consensus 473 Yee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KA 552 (917)
|||||+|||+++++++++|+++|.|+||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||
T Consensus 438 YEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KA 517 (1040)
T PLN02189 438 YEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKA 517 (1040)
T ss_pred HHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhc
Q 002480 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM 632 (917)
Q Consensus 553 GALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~ 632 (917)
||||+||||||+|||||||||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|+|+|++++|||++|
T Consensus 518 GAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~ 597 (1040)
T PLN02189 518 GAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINM 597 (1040)
T ss_pred hhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhh
Q 002480 633 KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEE 712 (917)
Q Consensus 633 ~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (917)
+|+||+|||+||||||+|||+||||++||...+.+..++ .+++||+.++++++.+ ...+. ..+
T Consensus 598 ~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~-----------~~~ 660 (1040)
T PLN02189 598 KGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT-----CDCCPCFGRRKKKHAK-NGLNG-----------EVA 660 (1040)
T ss_pred cccccCCCccccccCceeeeeeeeccCcccccccccccc-----cchhhhcccccccccc-ccccc-----------ccc
Confidence 999999999999999999999999999886544433322 1233454443221111 00000 012
Q ss_pred cccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccch
Q 002480 713 GIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTED 792 (917)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED 792 (917)
++++++++.+.++++++++++||+|.+|++|++.+.+|.+..++++++++||++|+||+||++|+|||||||+|+|+|||
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED 740 (1040)
T PLN02189 661 ALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITED 740 (1040)
T ss_pred cccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccH
Confidence 34455666677888999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccC-CCCChhHHHHhhhhhhh
Q 002480 793 ILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYG-CGLKPLERFSYINSVVY 871 (917)
Q Consensus 793 ~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~~PL~~g~~-~~Lt~~QRL~Yl~~~ly 871 (917)
+.||++||++|||++|++|++++|.|+||+|+.+++.||+|||+|++||+++++||+++++. ++|+++|||+|+++++|
T Consensus 741 ~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly 820 (1040)
T PLN02189 741 ILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIY 820 (1040)
T ss_pred HHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999998763 67999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHhh
Q 002480 872 PITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFSISDCISF 914 (917)
Q Consensus 872 pl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~i~~~~~~ 914 (917)
|+++++.++|+++|++|||+|++|||.++..++.||+.+++++
T Consensus 821 ~~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~ 863 (1040)
T PLN02189 821 PFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSI 863 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888876654
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=2.6e-259 Score=2264.43 Aligned_cols=826 Identities=67% Similarity=1.243 Sum_probs=760.9
Q ss_pred cccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCC-CCCCCccc
Q 002480 30 SVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGD-EEEDDTDD 108 (917)
Q Consensus 30 ~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~kGsprv~gd-~ee~~~dd 108 (917)
+-+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||
T Consensus 9 ~~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd 88 (1044)
T PLN02915 9 TRQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDD 88 (1044)
T ss_pred cccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchh
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999 66788999
Q ss_pred cccccccCCCCCchhhHHHhhhhccccCCCCCccccCccCCCccccccccCCCcccccCCCCCCCCCcccccccCCCCCC
Q 002480 109 LENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGR 188 (917)
Q Consensus 109 ~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~h~~~~~~~~g~ 188 (917)
+||||+|...++. +.|+|++|++|++.+... ..+.+++|++++ ++|++
T Consensus 89 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~---------------- 136 (1044)
T PLN02915 89 FEDEFQIKSPQDH----EPVHQNVFAGSENGDYNA-----------QQWRPGGPAFSS-TGSVA---------------- 136 (1044)
T ss_pred hhhhhcccccccc----chhhhhhccCCCCccccc-----------cccCCCCccccC-CCCcC----------------
Confidence 9999998643321 238999999988765211 112245677776 33432
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCCc
Q 002480 189 GKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMD 268 (917)
Q Consensus 189 g~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (917)
-+.+||+|| ||||++||||||+||+||+ |++.+.+..+ +.++ ..+++|+++++
T Consensus 137 -----------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~~~----~~~~-~~~~~~~~~~~ 189 (1044)
T PLN02915 137 -----------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKDDS----DDGD-DKGDEEEYLLA 189 (1044)
T ss_pred -----------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccccc----CCCC-CCCCccccccc
Confidence 125899997 9999999999999999996 4444444321 1111 12357889999
Q ss_pred cCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 002480 269 EGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETY 348 (917)
Q Consensus 269 ~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~ 348 (917)
++++||+||++|++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||
T Consensus 190 ~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~ 269 (1044)
T PLN02915 190 EARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETY 269 (1044)
T ss_pred ccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhh
Q 002480 349 LDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARK 428 (917)
Q Consensus 349 ~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~ 428 (917)
+|||++|||+++++++||+|||||+|+||.||||++|+||||||||+|||++||+|||||||+++||||||.|||+|||+
T Consensus 270 ~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~ 349 (1044)
T PLN02915 270 LDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARR 349 (1044)
T ss_pred HHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHh
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCC
Q 002480 429 WVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNV 508 (917)
Q Consensus 429 WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~ 508 (917)
||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+|||+|||+++
T Consensus 350 WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~ 429 (1044)
T PLN02915 350 WVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNT 429 (1044)
T ss_pred hcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHH
Q 002480 509 RDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALRE 588 (917)
Q Consensus 509 rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~ 588 (917)
||||+||||||+++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++|+
T Consensus 430 ~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~ 509 (1044)
T PLN02915 430 RDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVRE 509 (1044)
T ss_pred CCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCC
Q 002480 589 AMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPR 668 (917)
Q Consensus 589 amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~ 668 (917)
||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||..++.+.
T Consensus 510 AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~ 589 (1044)
T PLN02915 510 AMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPK 589 (1044)
T ss_pred hceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CcCCCCCCccccccccccccccccCC-----------------------------ccCCcchhhhhhhhhhhhccccccc
Q 002480 669 KTCNCLPKWCCCCCRSRKKSKKGKSN-----------------------------KKNKDTSKQIYALENIEEGIEGIDN 719 (917)
Q Consensus 669 ~~~~~~~~~~~~c~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (917)
.++++|+.||++||+.++++++...+ +...+++.+++++++|++++|++++
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1044)
T PLN02915 590 MTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDE 669 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999899887664332110 0012234567899999999999888
Q ss_pred -ccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHH
Q 002480 720 -EKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFK 798 (917)
Q Consensus 720 -~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~r 798 (917)
|++++++++.++++||+|++|++|++++.+|.+.+.+++++++||+|||||+||++|+||+||||.|+|+|||+.||++
T Consensus 670 ~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~r 749 (1044)
T PLN02915 670 LEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFK 749 (1044)
T ss_pred hhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHH
Q 002480 799 MHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPL 878 (917)
Q Consensus 799 Lh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~ 878 (917)
||++|||++|++|++++|.|++|+|+.++++||+|||+|++||++++++|+|+++.++|+++|||+|+++++||++++++
T Consensus 750 LH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp~ 829 (1044)
T PLN02915 750 MHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPL 829 (1044)
T ss_pred HHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999998777899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHhh
Q 002480 879 IAYCTLPAICLLTGKFIVPEVISDCISFSISDCISF 914 (917)
Q Consensus 879 liy~llP~l~LltG~~iip~~s~~~~~~~i~~~~~~ 914 (917)
++|+++|++|||+|++|||+++..+++||+.+++++
T Consensus 830 liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~ 865 (1044)
T PLN02915 830 LAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSI 865 (1044)
T ss_pred HHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHH
Confidence 999999999999999999999888877877766554
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=2.5e-239 Score=2084.80 Aligned_cols=791 Identities=65% Similarity=1.190 Sum_probs=705.3
Q ss_pred ccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCCCCCCccccccc
Q 002480 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENE 112 (917)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~kGsprv~gd~ee~~~dd~e~e 112 (917)
+.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| ||+++||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 568999999999999999999999999999999999999999999999999999998 57778999999
Q ss_pred cccCCCCCchhhHHHhhhhccccCCCCCccccCccCCCccccccccCCCcccccCCCCCCCCCcccccccCCCCCCCccc
Q 002480 113 FDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRI 192 (917)
Q Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~h~~~~~~~~g~g~~v 192 (917)
|+-+ .++++ ++|++|++.+ . +.+++|++++.++|++
T Consensus 71 ~~~~----~~~~~-----~~~~~~~~~~---~------------~~~~~~~~~~~~~~~~-------------------- 106 (977)
T PLN02195 71 HSRN----QSTMA-----SHLNDTQDVG---I------------HARHISSVSTVDSELN-------------------- 106 (977)
T ss_pred hccc----hhhhh-----hhcccCcCCC---C------------CCccccccccCCCccc--------------------
Confidence 9421 13322 6777765522 0 1133455544222211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCCCCcCCccCCC
Q 002480 193 HPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQ 272 (917)
Q Consensus 193 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (917)
| +|||++||||||+||.||+||+.++.+.+.. .++.++ +.+++|+++ ||.++
T Consensus 107 ---------------------~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~ 158 (977)
T PLN02195 107 ---------------------D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEAH-KAQIPP-EQQMEEKPS-ADAYE 158 (977)
T ss_pred ---------------------C----ccCCHHHHHHHHHHHHhhhhhcccccccccc-ccCCCC-ccCCccccc-ccccC
Confidence 1 3999999999999999998776655543321 122322 334677886 99999
Q ss_pred CcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHh
Q 002480 273 PLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRL 352 (917)
Q Consensus 273 pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL 352 (917)
||+||++|++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||
T Consensus 159 pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL 238 (977)
T PLN02195 159 PLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRL 238 (977)
T ss_pred CceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhH
Q 002480 353 SLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPF 432 (917)
Q Consensus 353 ~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPf 432 (917)
++||++++++++||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+||||
T Consensus 239 ~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPF 318 (977)
T PLN02195 239 SARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPF 318 (977)
T ss_pred HHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhccc
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCc
Q 002480 433 CKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHP 512 (917)
Q Consensus 433 Ckk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp 512 (917)
||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+|||+|||+++||||
T Consensus 319 CkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp 398 (977)
T PLN02195 319 CKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHP 398 (977)
T ss_pred ccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHh
Q 002480 513 GMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF 592 (917)
Q Consensus 513 ~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcf 592 (917)
+|||||++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||++||+||||
T Consensus 399 ~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf 478 (977)
T PLN02195 399 GMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCF 478 (977)
T ss_pred chhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCC
Q 002480 593 MMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (917)
Q Consensus 593 f~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~ 672 (917)
|+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++||..++.+..++.
T Consensus 479 ~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~ 558 (977)
T PLN02195 479 LMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSS 558 (977)
T ss_pred ccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876555444444
Q ss_pred CCCCccccccccccccccccC----CccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhh
Q 002480 673 CLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 748 (917)
Q Consensus 673 ~~~~~~~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 748 (917)
+| | |||+++++..+.++ ..++.+.+.++..++++++ ..++|++.++++++++++||+|++|++|++.+.
T Consensus 559 ~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~ 631 (977)
T PLN02195 559 SS---S-CCCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDN---YDEYERSMLISQMSFEKTFGLSSVFIESTLMEN 631 (977)
T ss_pred cc---c-ccccccccccccchhhccccccccccccccccccccc---cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHh
Confidence 44 3 35554433221110 1122222333444444332 123367778899999999999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHH
Q 002480 749 GGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRL 828 (917)
Q Consensus 749 GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~l 828 (917)
+|.+...+++++++||++|+||+||++|+||+||||+|+|+|||+.||++||++|||++|++|.+++|.|++|+|+.+++
T Consensus 632 ~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L 711 (977)
T PLN02195 632 GGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRL 711 (977)
T ss_pred cCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHhHhhhchhHHHHHhhccccccccC-CCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Q 002480 829 HQVLRWALGSVEILLSRHCPIWYGYG-CGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFS 907 (917)
Q Consensus 829 kQR~RWA~G~lQillsr~~PL~~g~~-~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~ 907 (917)
.||+|||+|++||++++++|+|+++. ++|+++|||+|+++++||++++++++|+++|++|||+|++|||+++..++.+|
T Consensus 712 ~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f 791 (977)
T PLN02195 712 HQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLF 791 (977)
T ss_pred HHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHH
Confidence 99999999999999999999998763 78999999999999999999999999999999999999999999999877777
Q ss_pred HHHHHhh
Q 002480 908 ISDCISF 914 (917)
Q Consensus 908 i~~~~~~ 914 (917)
+.+++++
T Consensus 792 ~~lfl~~ 798 (977)
T PLN02195 792 LGLFISI 798 (977)
T ss_pred HHHHHHH
Confidence 7776654
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=2.6e-211 Score=1856.83 Aligned_cols=786 Identities=50% Similarity=0.891 Sum_probs=669.9
Q ss_pred CCcccccccC---CceEEEeecccccccccccccCCccccc--cCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcC
Q 002480 4 NGRLVAGSHN---RNEFVLINADEVARVTSVKELSGQICQI--CGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN 78 (917)
Q Consensus 4 ~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Cqi--Cgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~ 78 (917)
++.||||+|| |+|+|.+..|++..|+++.+..+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 6789999999 9999999999999999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCCccccccccCCCCCCCCCCCCCccccccccccCCCCCchhhHHHhhhhccccCCCCCccccCccCCCcccccccc
Q 002480 79 QACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVA 158 (917)
Q Consensus 79 q~CPqCktrYkr~kGsprv~gd~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (917)
+.||+||++||.+ |+++++ +| ++ .+. .. ++. .. +.+.++-. ..+ .
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~----~~--~~~--~~----~~~--~~-~~~~~~~~------~~~-----~ 211 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PD----ES--SGA--LP----LPP--PG-GSKMDRRL------SLM-----K 211 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cc----cc--ccc--cc----CCC--CC-Cccccccc------ccc-----c
Confidence 7999999999865 332222 11 11 111 11 110 00 00000000 000 0
Q ss_pred CCCcccccCCCCCCCCCcccccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCcCccccchhhHHHHHhhhh
Q 002480 159 QEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNE 238 (917)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~~h~~~~~~~~g~g~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~ 238 (917)
++-.+..++.|||+ |+ ||++++| ++|||||+.|++...
T Consensus 212 ~~~~~~~~~~~~~~-----~~---------------------------~w~~~~~--~~~~~~~~~~~~~~~-------- 249 (1135)
T PLN02248 212 SNSLLMRSQTGDFD-----HN---------------------------RWLFETK--GTYGYGNAVWPKDDG-------- 249 (1135)
T ss_pred ccchhccCCCCCCC-----Cc---------------------------eeeeecc--cccccccccCccccc--------
Confidence 10011223447877 65 9999999 999999999998421
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCcCCccCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCchhhHH
Q 002480 239 KLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLW 318 (917)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a~~lw 318 (917)
.|+++ + +.. ...++|++|+||+||+++++++|+|||++++++|+++++||+||++|++.++.|+|
T Consensus 250 -------~~~~~----~--~~~--~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W 314 (1135)
T PLN02248 250 -------YGDDG----G--GGG--PGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLW 314 (1135)
T ss_pred -------cCCCC----C--ccc--cccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 12211 1 111 11478999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhhcCC-----CCCCCCceeEEEecCCCCCCCHHHHHHHHHHHH
Q 002480 319 LTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEG-----KPSDLADIDIFVSTVDPMKEPPLITANTVLSIL 393 (917)
Q Consensus 319 l~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~-----~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~l 393 (917)
+++++||+||+|+|+|+|++||+||+|.||++||++|||+|+ .+++||+|||||+|+||.||||++|+|||||||
T Consensus 315 ~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiL 394 (1135)
T PLN02248 315 GMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSIL 394 (1135)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHh
Confidence 999999999999999999999999999999999999998654 357899999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHH
Q 002480 394 AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREY 473 (917)
Q Consensus 394 a~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreY 473 (917)
|+|||++||+|||||||+++||||||.|||+||++||||||||+|||||||+||++|.|+++++++|+|++|||+|||||
T Consensus 395 A~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreY 474 (1135)
T PLN02248 395 AADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREY 474 (1135)
T ss_pred cccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---------------h---------------hccCCCCCcccCCCCCCCCCC--------CCCCchhh
Q 002480 474 EEFKVRINGLVA---------------M---------------AQKVPEDGWTMQDGTPWPGNN--------VRDHPGMI 515 (917)
Q Consensus 474 ee~kvri~~l~~---------------~---------------~~kvp~e~w~m~dgt~wpg~~--------~rdhp~~i 515 (917)
||||+|||+|++ + ++|+|+++| |+|||+|||+| ++|||+||
T Consensus 475 ee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~II 553 (1135)
T PLN02248 475 DEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGII 553 (1135)
T ss_pred HHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCccee
Confidence 999999999974 1 256899999 99999999995 46999999
Q ss_pred hhhhcCCC------------Ccccc--CCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 002480 516 QVFLGQNG------------VRDIE--GNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (917)
Q Consensus 516 qv~l~~~g------------~~d~~--~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip 581 (917)
||||++++ ..|.+ +.+||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|
T Consensus 554 qVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiN 633 (1135)
T PLN02248 554 QVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIY 633 (1135)
T ss_pred EEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccC
Confidence 99998653 12333 44899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCC
Q 002480 582 NSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 661 (917)
Q Consensus 582 ~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~ 661 (917)
||++||+||||||||+ |+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||
T Consensus 634 ns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp 712 (1135)
T PLN02248 634 NSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPP 712 (1135)
T ss_pred CchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCc
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHH
Q 002480 662 VKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFI 741 (917)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 741 (917)
...+.. +++++||+.+++++..+.. .+ ..+++++ .++ .++.+.+++|||+|..|+
T Consensus 713 ~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~-----~~~----~~~~~~~~~rfG~S~~fi 767 (1135)
T PLN02248 713 RAKEHS--------GCFGSCKFTKKKKKETSAS-------EP-EEQPDLE-----DDD----DLELSLLPKRFGNSTMFA 767 (1135)
T ss_pred cccccc--------ccccccccccccccccccc-------cc-ccccccc-----ccc----hhhhhhhhhhhccchhhh
Confidence 754332 2234455544432211100 00 0011111 111 135667899999999999
Q ss_pred HHHhH-hhCCCCC-------------------CCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHh
Q 002480 742 ASTLK-EAGGVPT-------------------GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHC 801 (917)
Q Consensus 742 ~S~l~-e~GG~p~-------------------~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~ 801 (917)
+|+.. +.+|.+. ...++++++||++||||+||++|+||+||||.|+|+|||+.||++||+
T Consensus 768 ~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~ 847 (1135)
T PLN02248 768 ASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHN 847 (1135)
T ss_pred hhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHh
Confidence 99953 3333322 223578999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHH
Q 002480 802 HGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAY 881 (917)
Q Consensus 802 ~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy 881 (917)
+|||++||+|++.+|.|++|+|+.++++||+|||+|++||++++++|++. .++|+++|||+|+++++||++++++++|
T Consensus 848 rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY 925 (1135)
T PLN02248 848 RGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVY 925 (1135)
T ss_pred cCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999986 4789999999999999999999999999
Q ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHH
Q 002480 882 CTLPAICLLTGKFIVPEVISDCISFSISDCI 912 (917)
Q Consensus 882 ~llP~l~LltG~~iip~~s~~~~~~~i~~~~ 912 (917)
+++|++|||+|+++||+.+..+++|++.+++
T Consensus 926 ~llP~l~LLtGi~~~p~~~~~fl~yll~l~l 956 (1135)
T PLN02248 926 CFLPALSLFSGQFIVQTLNVTFLVYLLIITI 956 (1135)
T ss_pred HHHHHHHHHcCCcccccccHHHHHHHHHHHH
Confidence 9999999999999999998888777766543
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.5e-173 Score=1497.66 Aligned_cols=542 Identities=70% Similarity=1.249 Sum_probs=516.7
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhh
Q 002480 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYF 447 (917)
Q Consensus 368 VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF 447 (917)
|||||+|+||.||||++|+|||||+||+|||++||+|||||||+++|||+||.||++|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccc
Q 002480 448 AQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDI 527 (917)
Q Consensus 448 ~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~ 527 (917)
++|.|+++++++|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEec
Q 002480 528 EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (917)
Q Consensus 528 ~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~ 607 (917)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 002480 608 PQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (917)
Q Consensus 608 PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (917)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+..+.+| ++++||+++++
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998877666554 33444444444
Q ss_pred ccccc-CC----ccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHH
Q 002480 688 SKKGK-SN----KKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLN 762 (917)
Q Consensus 688 ~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~ 762 (917)
+++.+ ++ .++.+.+.++++++|++++.++.++|++..+++++|+++||+|++|++|+.++.|+.+.+.+++++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~ 395 (720)
T PF03552_consen 316 KKKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLE 395 (720)
T ss_pred cccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 33322 21 24567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHH
Q 002480 763 EAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIL 842 (917)
Q Consensus 763 eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQil 842 (917)
||+|||||+||++|+|||||||+|+|+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||+
T Consensus 396 EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~ 475 (720)
T PF03552_consen 396 EAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIF 475 (720)
T ss_pred HHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHhh
Q 002480 843 LSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFSISDCISF 914 (917)
Q Consensus 843 lsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~i~~~~~~ 914 (917)
++||||+|+++.++|+++|||+|++.++|+++|+|+++|+++|++|||+|++|||+++..++.+|+.+++++
T Consensus 476 fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~ 547 (720)
T PF03552_consen 476 FSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSI 547 (720)
T ss_pred hhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHH
Confidence 999999999877899999999999999999999999999999999999999999999999888888877653
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=2.3e-167 Score=1449.09 Aligned_cols=559 Identities=37% Similarity=0.702 Sum_probs=510.1
Q ss_pred cCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 002480 269 EGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETY 348 (917)
Q Consensus 269 ~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~ 348 (917)
.+.+||+++++++... ||++.++.++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.++
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 3457999999999985 899999999999999999999999887 689999999999999999999999999999999
Q ss_pred hhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhh
Q 002480 349 LDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARK 428 (917)
Q Consensus 349 ~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~ 428 (917)
+++|++||+ +||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999984 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCC--CCCCCC
Q 002480 429 WVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG--TPWPGN 506 (917)
Q Consensus 429 WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dg--t~wpg~ 506 (917)
||||||||+|||||||+||+++.+ .+..++|++|||+|||||||||+||++.+ +...|.+.|+ ++|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 999999999999999999998654 33458999999999999999999999864 3456777655 689998
Q ss_pred CCCCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHH
Q 002480 507 NVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKAL 586 (917)
Q Consensus 507 ~~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~L 586 (917)
+++|||+||||+++++|+ +.+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 999999999999999765 4478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCC-ccEEEEecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCC
Q 002480 587 REAMCFMMDPTSG-KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKK 665 (917)
Q Consensus 587 r~amcff~Dp~~g-~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~ 665 (917)
|+||||||||+.+ +++|||||||+|+ |+|+|+++|||+++|+|+||+|||+||||||+|||+||||++||...+
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 9999999998744 5899999999998 889999999999999999999999999999999999999998875332
Q ss_pred CCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHh
Q 002480 666 PPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTL 745 (917)
Q Consensus 666 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l 745 (917)
.... ... .+. ..+++.+++++||+|+.|++|++
T Consensus 381 ~~~~------------~~~----------------------------------~~~-~~~~~~~~~~~fg~s~~f~~s~~ 413 (756)
T PLN02190 381 DGSL------------SSV----------------------------------ATR-EFLAEDSLAREFGNSKEMVKSVV 413 (756)
T ss_pred cccc------------ccc----------------------------------ccc-cccchhhhhhhcCCcHHHHHHHH
Confidence 1000 000 000 12445677899999999999998
Q ss_pred HhhCCCCC-CCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCH
Q 002480 746 KEAGGVPT-GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINL 824 (917)
Q Consensus 746 ~e~GG~p~-~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl 824 (917)
.+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++||+|+++||.|.+|+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l 493 (756)
T PLN02190 414 DALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGG 493 (756)
T ss_pred HHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCCh
Confidence 76654433 33457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchh
Q 002480 825 SDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVI 900 (917)
Q Consensus 825 ~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s 900 (917)
.+++.||+||++|++||+++++||+++++.++|+++|||+|++.++ |++++++++|+++|++|||+|++|+|+.+
T Consensus 494 ~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~~ 568 (756)
T PLN02190 494 PEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKGV 568 (756)
T ss_pred HHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCcc
Confidence 9999999999999999999999999976668999999999999888 99999999999999999999999999774
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.5e-160 Score=1398.03 Aligned_cols=553 Identities=38% Similarity=0.709 Sum_probs=507.0
Q ss_pred cCCCCcceeeecCCCCcchhHHHHHHHHHHHHHhhheecccccCch-hhHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 002480 269 EGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDA-YGLWLTSVICEIWFAVSWILDQFPKWDPIVRET 347 (917)
Q Consensus 269 ~~~~pl~~k~~~~~~~~~~yR~~~v~~l~~l~~yl~wRi~~~~~~a-~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t 347 (917)
...+||++++++++.. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+|++|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4567999999999876 6999999999999999999999877655 789999999999999999999999999999999
Q ss_pred hhhHhhhhhhcCCCCCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhh
Q 002480 348 YLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFAR 427 (917)
Q Consensus 348 ~~drL~~r~e~~~~~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~ 427 (917)
++|||+.+++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++|||+||.|||+||+
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999986654 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCC-----CC
Q 002480 428 KWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG-----TP 502 (917)
Q Consensus 428 ~WvPfCkk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dg-----t~ 502 (917)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.++++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 568899999999999999999999976 889887 655444 68
Q ss_pred CCCCC-CCCCchhhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 002480 503 WPGNN-VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (917)
Q Consensus 503 wpg~~-~rdhp~~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip 581 (917)
|+++. ++|||+||||+++++++.|.+|++||+|+|||||||||++||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 99876 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCC
Q 002480 582 NSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 661 (917)
Q Consensus 582 ~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~ 661 (917)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997421
Q ss_pred CCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHH
Q 002480 662 VKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFI 741 (917)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 741 (917)
.. .++++ + +++
T Consensus 393 ~~-------------------------------------------~~~~~----~-----------------~~~----- 403 (734)
T PLN02893 393 LI-------------------------------------------LPEIP----E-----------------LNP----- 403 (734)
T ss_pred cc-------------------------------------------chhhh----h-----------------ccc-----
Confidence 00 00000 0 000
Q ss_pred HHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCC
Q 002480 742 ASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAP 821 (917)
Q Consensus 742 ~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aP 821 (917)
.++...+...++++++|++|+||.||++|+||++|||.|+|+|||+.||++||++|||++|++|++++|.|++|
T Consensus 404 ------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP 477 (734)
T PLN02893 404 ------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSP 477 (734)
T ss_pred ------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCC
Confidence 01123344567899999999999999999999999999999999999999999999999999988888899999
Q ss_pred CCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhh
Q 002480 822 INLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVIS 901 (917)
Q Consensus 822 etl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~ 901 (917)
+|+.++++||+|||.|++||+++++||++++. ++|++.||++|++.++||++++++++|+++|++||++|++|||+++.
T Consensus 478 ~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~ 556 (734)
T PLN02893 478 INLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKASD 556 (734)
T ss_pred CCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccH
Confidence 99999999999999999999999999999754 78999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHh
Q 002480 902 DCISFSISDCIS 913 (917)
Q Consensus 902 ~~~~~~i~~~~~ 913 (917)
.++..++.++++
T Consensus 557 ~~f~~yi~l~~s 568 (734)
T PLN02893 557 PWFFLYIFLFLG 568 (734)
T ss_pred HHHHHHHHHHHH
Confidence 877777666554
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=3.3e-56 Score=531.47 Aligned_cols=377 Identities=26% Similarity=0.444 Sum_probs=307.7
Q ss_pred HH-HHHHHHHHHHHhhheecccccCch----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhhcCCCCC
Q 002480 289 RL-IILLRLVILGLFFHYRILHPVNDA----YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPS 363 (917)
Q Consensus 289 R~-~~v~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~ 363 (917)
|+ ++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 55 455666778999999999987753 23567799999999999888888888888775321 123457
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCCh
Q 002480 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (917)
Q Consensus 364 ~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraP 443 (917)
.+|+|||+||||| |++.++++|+.+++++|||.+|+.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 7999999999999 9999999999999999999999999999999987442211110
Q ss_pred hhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCC
Q 002480 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (917)
Q Consensus 444 e~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g 523 (917)
+. ++.+-+..+.+++++
T Consensus 185 -------------------~~-------~~~~~~~~~~~l~~~------------------------------------- 201 (713)
T TIGR03030 185 -------------------QA-------EAAQRREELKEFCRK------------------------------------- 201 (713)
T ss_pred -------------------hh-------hhhhhHHHHHHHHHH-------------------------------------
Confidence 00 000001112223211
Q ss_pred CccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCccE
Q 002480 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKI 602 (917)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~kv 602 (917)
.++.|+.|++ ++|+||||||++++ .++||||+++|||++ +.+++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~----~a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALK----HTDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHH----hcCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1478999988 68899999999999 589999999999997 7999999999988 588 89
Q ss_pred EEEecCccccCCCcc-------ccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCC
Q 002480 603 CYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLP 675 (917)
Q Consensus 603 a~VQ~PQ~F~nid~~-------Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~ 675 (917)
++||+||.|+|.++. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998753 34567888999999999999999999999999999998
Q ss_pred CccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCC
Q 002480 676 KWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGA 755 (917)
Q Consensus 676 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~ 755 (917)
+++||++.
T Consensus 320 ----------------------------------------------------------------------~~iGGf~~-- 327 (713)
T TIGR03030 320 ----------------------------------------------------------------------DEIGGIAG-- 327 (713)
T ss_pred ----------------------------------------------------------------------HHcCCCCC--
Confidence 24676543
Q ss_pred ChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhh
Q 002480 756 STASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWA 835 (917)
Q Consensus 756 ~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA 835 (917)
++++||++++++|+++||+++|++ +..+ .|++|+|++++++||.||+
T Consensus 328 -------------------------------~~vtED~~l~~rL~~~G~~~~y~~-~~~~-~g~~p~sl~~~~~Qr~RWa 374 (713)
T TIGR03030 328 -------------------------------ETVTEDAETALKLHRRGWNSAYLD-RPLI-AGLAPETLSGHIGQRIRWA 374 (713)
T ss_pred -------------------------------CCcCcHHHHHHHHHHcCCeEEEec-cccc-cccCCCCHHHHHHHHHHHh
Confidence 689999999999999999999995 4443 7999999999999999999
Q ss_pred chhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH
Q 002480 836 LGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFSISDC 911 (917)
Q Consensus 836 ~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~i~~~ 911 (917)
+|++|+++. .+|++ .+++++.||++|++.++||+++++.++|+++|+++|++|..+++.....++.|+++.+
T Consensus 375 ~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~~~~~lp~~ 446 (713)
T TIGR03030 375 QGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALEILAYALPHM 446 (713)
T ss_pred cChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHHHHHHHHHHH
Confidence 999999974 58987 5799999999999999999999999999999999999999999866555555544433
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=4.9e-56 Score=532.82 Aligned_cols=358 Identities=28% Similarity=0.454 Sum_probs=303.0
Q ss_pred HHHHHHHHHHHhhheecccccCch----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhhcCCCCCCCC
Q 002480 291 IILLRLVILGLFFHYRILHPVNDA----YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLA 366 (917)
Q Consensus 291 ~~v~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e~~~~~~~lP 366 (917)
++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|... ..+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 566778889999999999887743 4456778999999999999988888888877532 1122345789
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhh
Q 002480 367 DIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWY 446 (917)
Q Consensus 367 ~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~y 446 (917)
.|||+||||| |++.++++||.+++++|||.+|+.|||+|||+++ |+.++++ ++
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~~la~-------~~---------- 313 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFRQFAQ-------EV---------- 313 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHHHHHH-------HC----------
Confidence 9999999999 9999999999999999999999999999999987 2222211 10
Q ss_pred hhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCcc
Q 002480 447 FAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRD 526 (917)
Q Consensus 447 F~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d 526 (917)
T Consensus 314 -------------------------------------------------------------------------------- 313 (852)
T PRK11498 314 -------------------------------------------------------------------------------- 313 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCccEEEE
Q 002480 527 IEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYV 605 (917)
Q Consensus 527 ~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~kva~V 605 (917)
++.|+.|++ +.|+||||+|++++ .++||||+++||||+ +.+++|+++|++| .|| ++|+|
T Consensus 314 -------~v~yI~R~~----n~~gKAGnLN~aL~----~a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 314 -------GVKYIARPT----HEHAKAGNINNALK----YAKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred -------CcEEEEeCC----CCcchHHHHHHHHH----hCCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 367899887 57899999999999 589999999999996 8999999999865 788 89999
Q ss_pred ecCccccCCCccc-------cccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCcc
Q 002480 606 QFPQRFDGIDRHD-------RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWC 678 (917)
Q Consensus 606 Q~PQ~F~nid~~D-------ryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~ 678 (917)
|+||.|+|.|+.. .+.+++..||+..++|+|.++++++|||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987642 2457788999999999999999999999999999988
Q ss_pred ccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChh
Q 002480 679 CCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTA 758 (917)
Q Consensus 679 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~ 758 (917)
+|+||+++
T Consensus 431 -------------------------------------------------------------------eeVGGfd~----- 438 (852)
T PRK11498 431 -------------------------------------------------------------------DEIGGIAV----- 438 (852)
T ss_pred -------------------------------------------------------------------HHhcCCCC-----
Confidence 35787764
Q ss_pred hHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchh
Q 002480 759 SLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (917)
Q Consensus 759 ~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~ 838 (917)
++++||++++++|+.+||+++|++. ..+ .|++|+|++++++||.||++|+
T Consensus 439 ----------------------------~titED~dlslRL~~~Gyrv~yl~~-~~a-~glaPesl~~~~~QR~RWarG~ 488 (852)
T PRK11498 439 ----------------------------ETVTEDAHTSLRLHRRGYTSAYMRI-PQA-AGLATESLSAHIGQRIRWARGM 488 (852)
T ss_pred ----------------------------CccCccHHHHHHHHHcCCEEEEEec-cce-eEECCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999954 344 7999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Q 002480 839 VEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFSISDCI 912 (917)
Q Consensus 839 lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~i~~~~ 912 (917)
+|+++ +++|++ +++|++.||++|++++++++.+++.++|+++|++||++|..++-.-...++.|+++.++
T Consensus 489 lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i~~y~lP~~~ 558 (852)
T PRK11498 489 VQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLPHMI 558 (852)
T ss_pred HHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHHHHHHHHHHH
Confidence 99997 578987 68999999999999999999999999999999999999998886544444455544443
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=4e-46 Score=324.61 Aligned_cols=80 Identities=78% Similarity=1.481 Sum_probs=42.1
Q ss_pred cccccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccccCCCCCCCCCCCCCcc
Q 002480 28 VTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTD 107 (917)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~kGsprv~gd~ee~~~d 107 (917)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998875
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=7.3e-36 Score=354.38 Aligned_cols=354 Identities=19% Similarity=0.234 Sum_probs=238.2
Q ss_pred hhHHHHHHHHHHHHHhhheecccccCchh---------hHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhh
Q 002480 287 PYRLIILLRLVILGLFFHYRILHPVNDAY---------GLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYE 357 (917)
Q Consensus 287 ~yR~~~v~~l~~l~~yl~wRi~~~~~~a~---------~lwl~~~i~Ei~~a~~wiL~q~~kw~Pi~R~t~~drL~~r~e 357 (917)
..|+++++..++...|..|+....+...- .+.++.+..+.+.+..-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 35677777777888999999877554321 11111222222222222333332211 12111 1110000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHH
Q 002480 358 KEGKPSDLADIDIFVSTVDPMKEPPLIT----ANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFC 433 (917)
Q Consensus 358 ~~~~~~~lP~VDVfV~T~dP~kEpp~v~----~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfC 433 (917)
.+......|.|+|+||+|| |++..+ ..|+.|+++.+|| +++.+||+|||.++-+.. .
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~--~------------- 176 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA--A------------- 176 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH--H-------------
Confidence 1123456799999999999 998754 5556677779998 589999999999873211 0
Q ss_pred HhhcCCCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCch
Q 002480 434 KKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPG 513 (917)
Q Consensus 434 kk~~iepraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~ 513 (917)
|+ +.|+++.. +.
T Consensus 177 -------------------------------e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 177 -------------------------------EE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred -------------------------------HH----HHHHHHHH-------hc--------------------------
Confidence 00 11222211 00
Q ss_pred hhhhhhcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh
Q 002480 514 MIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 593 (917)
Q Consensus 514 ~iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff 593 (917)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||++||||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 012689988887 67899999999999544 57799999999997 7999999999988
Q ss_pred c-CCCCCccEEEEecCccccCCCcc-ccccc-hhhhhHhhhccccccCCC--ccccccCcchhhhhhcCCCCCCCCCCCC
Q 002480 594 M-DPTSGKKICYVQFPQRFDGIDRH-DRYSN-RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPR 668 (917)
Q Consensus 594 ~-Dp~~g~kva~VQ~PQ~F~nid~~-Dryan-~~~vFfdi~~~glDg~qg--p~yvGTgcv~RR~ALyG~~p~~~~~~~~ 668 (917)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+|+ ..|+|+|+++||+||..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 88 89999999999887631 22222 234555677788887773 57999999999999942
Q ss_pred CcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhh
Q 002480 669 KTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 748 (917)
Q Consensus 669 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 748 (917)
|||-.. +.+.
T Consensus 311 ------------~~glp~----------------------------------------------------------L~g~ 320 (691)
T PRK05454 311 ------------HCGLPP----------------------------------------------------------LPGR 320 (691)
T ss_pred ------------hcCCcc----------------------------------------------------------cccc
Confidence 111100 0011
Q ss_pred CCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHH
Q 002480 749 GGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRL 828 (917)
Q Consensus 749 GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~l 828 (917)
| ||..++++||++++.+|+++||+++|+ |+....++++|+|+.+++
T Consensus 321 ~---------------------------------p~~~~~LseD~~~a~~l~~~GyrV~~~-pd~~~~~ee~P~tl~~~~ 366 (691)
T PRK05454 321 G---------------------------------PFGGHILSHDFVEAALMRRAGWGVWLA-PDLPGSYEELPPNLLDEL 366 (691)
T ss_pred C---------------------------------CCCCCcccHHHHHHHHHHHCCCEEEEc-CccccccccCCCCHHHHH
Confidence 2 444579999999999999999999999 553323899999999999
Q ss_pred HHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHH
Q 002480 829 HQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIA 880 (917)
Q Consensus 829 kQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~li 880 (917)
+||.||++|++|++.. ++ .+++++.+|+.|++.++.++.+...++
T Consensus 367 ~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll 411 (691)
T PRK05454 367 KRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLL 411 (691)
T ss_pred HHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999852 33 578999999998876666655443333
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=2.3e-34 Score=305.92 Aligned_cols=182 Identities=23% Similarity=0.352 Sum_probs=146.4
Q ss_pred CcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCccEEEEecCccc
Q 002480 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRF 611 (917)
Q Consensus 533 P~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~-Dp~~g~kva~VQ~PQ~F 611 (917)
++++|+.|++ +.|+||||||+++...+ ++++||+++|||+. +.|++|++++.+|. || +||.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4799999999 57899999999998422 68899999999996 89999999999886 88 89999999999
Q ss_pred cCCCcc-cccc-chhhhhHhhhccccccCCC--ccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 002480 612 DGIDRH-DRYS-NRNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (917)
Q Consensus 612 ~nid~~-Drya-n~~~vFfdi~~~glDg~qg--p~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (917)
.|.+.. .+.. -++..|..+.+.|++.|++ .+|+||+.++||+||... | +
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------~-~---- 188 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------C-A---- 188 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh----------------------c-C----
Confidence 987642 2211 1356677788888887755 588999999999999421 0 0
Q ss_pred cccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHh
Q 002480 688 SKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHV 767 (917)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v 767 (917)
+.++||+.
T Consensus 189 ---------------------------------------------------------~~~i~g~g--------------- 196 (254)
T cd04191 189 ---------------------------------------------------------LPVLPGRP--------------- 196 (254)
T ss_pred ---------------------------------------------------------CccccCCC---------------
Confidence 01234431
Q ss_pred hcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHH
Q 002480 768 ISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (917)
Q Consensus 768 ~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQ 840 (917)
||..++++||+++|++++.+||+++|. |...+.++++|+|++++++||.||++|++|
T Consensus 197 ---------------~~~~~~l~eD~~l~~~~~~~G~ri~~~-~~~~~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 ---------------PFGGHILSHDFVEAALMRRAGWEVRLA-PDLEGSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred ---------------CCCCCeecHHHHHHHHHHHcCCEEEEc-cCCcceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 566689999999999999999999999 544333689999999999999999999987
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-31 Score=297.66 Aligned_cols=233 Identities=30% Similarity=0.459 Sum_probs=175.0
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChh
Q 002480 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPE 444 (917)
Q Consensus 365 lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe 444 (917)
+|.|||+||+|| |++.++.+|+.|++++|||. +.|+|+|||+++-|++-+ ++++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~--------------~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEIL--------------EELGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHH--------------HHHHhh-----
Confidence 699999999999 99999999999999999996 889999999998554422 222100
Q ss_pred hhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCC
Q 002480 445 WYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGV 524 (917)
Q Consensus 445 ~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~ 524 (917)
| ++. +
T Consensus 109 ----------------------------~-----------------~~~---------------------~--------- 113 (439)
T COG1215 109 ----------------------------Y-----------------GPN---------------------F--------- 113 (439)
T ss_pred ----------------------------c-----------------Ccc---------------------e---------
Confidence 0 000 0
Q ss_pred ccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEE
Q 002480 525 RDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICY 604 (917)
Q Consensus 525 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~ 604 (917)
+++|. ++ .+++|+||+|.++. .+.+++|+++|||++ |.+++|++++..|.|+. .++.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~----~~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLK----RAKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHh----hcCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 12211 22 57899999999999 467999999999996 89999999999999884 3479
Q ss_pred EecCccccCCCccccccch-----hhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccc
Q 002480 605 VQFPQRFDGIDRHDRYSNR-----NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCC 679 (917)
Q Consensus 605 VQ~PQ~F~nid~~Dryan~-----~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 679 (917)
+|.|+.+.+.++....... ...|+-....+.++....++.|++.+|||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL------------------------ 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL------------------------ 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH------------------------
Confidence 9999999887641111111 12222222222233345666777777777766
Q ss_pred cccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhh
Q 002480 680 CCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTAS 759 (917)
Q Consensus 680 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~ 759 (917)
++.||
T Consensus 227 ------------------------------------------------------------------~~~g~--------- 231 (439)
T COG1215 227 ------------------------------------------------------------------EEVGG--------- 231 (439)
T ss_pred ------------------------------------------------------------------HHhCC---------
Confidence 34564
Q ss_pred HHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhH
Q 002480 760 LLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSV 839 (917)
Q Consensus 760 ~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~l 839 (917)
|...++|||.+++++|+.+|||++|+.. .. +++++|+|+.++++||.||++|++
T Consensus 232 ------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~-~~-~~~~~p~t~~~~~~Qr~RW~~g~~ 285 (439)
T COG1215 232 ------------------------WLEDTITEDADLTLRLHLRGYRVVYVPE-AI-VWTEAPETLKELWRQRLRWARGGL 285 (439)
T ss_pred ------------------------CCCCceeccHHHHHHHHHCCCeEEEeec-ce-EeeeCcccHHHHHHHHHHHHcccc
Confidence 4557999999999999999999999954 33 489999999999999999999999
Q ss_pred HHHHh
Q 002480 840 EILLS 844 (917)
Q Consensus 840 Qills 844 (917)
|++..
T Consensus 286 ~~~~~ 290 (439)
T COG1215 286 QVLLL 290 (439)
T ss_pred eeeeh
Confidence 99974
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=2.1e-29 Score=286.17 Aligned_cols=232 Identities=22% Similarity=0.269 Sum_probs=171.3
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCC
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepra 442 (917)
...|.|+|+||+|| |+. .+.+||.|+++++|| ++.|+|+|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 874 578999999999999 489999999998754432222
Q ss_pred hhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCC
Q 002480 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (917)
Q Consensus 443 Pe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 522 (917)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcc
Q 002480 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKK 601 (917)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~k 601 (917)
.|++.++.+++ ...||+|+|++++ .++++||+++|+|++ +++++|++.+..| .|| +
T Consensus 129 ---------~~~v~vv~~~~-----n~Gka~AlN~gl~----~a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAH-----NQGKAIALRMGAA----AARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCC-----CCCHHHHHHHHHH----hCCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 02344554443 2359999999998 478999999999996 8999999999866 466 7
Q ss_pred EEEEecCccccCCCcc-ccc-cchhhhhHhhhccccccCCCccc-cccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCcc
Q 002480 602 ICYVQFPQRFDGIDRH-DRY-SNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWC 678 (917)
Q Consensus 602 va~VQ~PQ~F~nid~~-Dry-an~~~vFfdi~~~glDg~qgp~y-vGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~ 678 (917)
++.||..++..+.+.. .+. ..+...++....++....+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al----------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL----------------------- 242 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH-----------------------
Confidence 9999997776543211 111 11333344455555444444433 366666666665
Q ss_pred ccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChh
Q 002480 679 CCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTA 758 (917)
Q Consensus 679 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~ 758 (917)
+++||+
T Consensus 243 -------------------------------------------------------------------~~vGg~------- 248 (444)
T PRK14583 243 -------------------------------------------------------------------ADVGYW------- 248 (444)
T ss_pred -------------------------------------------------------------------HHcCCC-------
Confidence 456754
Q ss_pred hHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchh
Q 002480 759 SLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (917)
Q Consensus 759 ~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~ 838 (917)
..+.++||++++++|+.+||++.|+ |+..+ ++++|+|++++++||.||++|.
T Consensus 249 --------------------------~~~~i~ED~dl~~rl~~~G~~i~~~-p~a~~-~~~~p~t~~~~~~Qr~RW~~G~ 300 (444)
T PRK14583 249 --------------------------SPDMITEDIDISWKLQLKHWSVFFE-PRGLC-WILMPETLRGLWKQRLRWAQGG 300 (444)
T ss_pred --------------------------CCCcccccHHHHHHHHHcCCeEEEe-eccEE-eeeCCCCHHHHHHHHHHHhCcH
Confidence 4468999999999999999999999 55544 8999999999999999999999
Q ss_pred HHHHHhh
Q 002480 839 VEILLSR 845 (917)
Q Consensus 839 lQillsr 845 (917)
+|+++++
T Consensus 301 ~~~~~~~ 307 (444)
T PRK14583 301 AEVFLKN 307 (444)
T ss_pred HHHHHHH
Confidence 9999853
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=2.8e-28 Score=276.89 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=196.2
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCC
Q 002480 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (917)
Q Consensus 362 ~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepr 441 (917)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||+++-|.+.+.+++ ++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~----------~~------ 104 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ----------NE------ 104 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH----------Hh------
Confidence 467899999999999 77 78999999999999999999999999999986544333210 00
Q ss_pred ChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcC
Q 002480 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (917)
Q Consensus 442 aPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 521 (917)
T Consensus 105 -------------------------------------------------------------------------------- 104 (439)
T TIGR03111 105 -------------------------------------------------------------------------------- 104 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCc
Q 002480 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGK 600 (917)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~-Dp~~g~ 600 (917)
.|++ ++.+.+ +.+.||+|+|++++ .++++||+++|+|++ +++++|++++..|. ||
T Consensus 105 ----------~~~v-~v~~~~----~~~Gka~AlN~gl~----~s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 105 ----------FPGL-SLRYMN----SDQGKAKALNAAIY----NSIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred ----------CCCe-EEEEeC----CCCCHHHHHHHHHH----HccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 0111 121111 13579999999999 478999999999997 79999999999885 77
Q ss_pred cEEEEecCccccCCCccc-------cccchhhhhHhhhc---cc--cccCCCccccccCcchhhhhhcCCCCCCCCCCCC
Q 002480 601 KICYVQFPQRFDGIDRHD-------RYSNRNVVFFDINM---KG--LDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPR 668 (917)
Q Consensus 601 kva~VQ~PQ~F~nid~~D-------ryan~~~vFfdi~~---~g--lDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~ 668 (917)
+++.|+..+.- +.+..+ ++..++. |+.... .| .....+.+++
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~y~~~~l~~r~~~s~~~~~~~------------------------ 214 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKGRFLKLIRRCE-YFEYAQAFLAGRNFESQVNSLFT------------------------ 214 (439)
T ss_pred CeEEEEeEEec-CchhhhhhcchhhhHhHHhH-HHHHHHHHHhhhHHHHhcCCeEE------------------------
Confidence 56666554321 111000 0000100 111000 00 0000000000
Q ss_pred CcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhh
Q 002480 669 KTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 748 (917)
Q Consensus 669 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~ 748 (917)
-.|...+|++++++++
T Consensus 215 ----------------------------------------------------------------~sGa~~~~Rr~~l~~v 230 (439)
T TIGR03111 215 ----------------------------------------------------------------LSGAFSAFRRETILKT 230 (439)
T ss_pred ----------------------------------------------------------------EccHHHhhhHHHHHHh
Confidence 0144456777777888
Q ss_pred CCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCHHHH
Q 002480 749 GGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHC-HGWRSVYCIPKRPAFKGSAPINLSDR 827 (917)
Q Consensus 749 GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~-~GWrsvY~~p~~~Af~G~aPetl~a~ 827 (917)
||++. ++++||++++++++. .|+++.|+ |+.. ++.++|+|++++
T Consensus 231 ggf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~-~~a~-~~~~~p~t~~~~ 275 (439)
T TIGR03111 231 QLYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLC-ENAI-FYVDPIDGLNKL 275 (439)
T ss_pred CCCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEEC-CCCE-EEEECCcCHHHH
Confidence 97654 689999999999975 69999998 5443 588999999999
Q ss_pred HHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Q 002480 828 LHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSIPLIAYCTLPAICLLTGKFIVPEVISDCISFS 907 (917)
Q Consensus 828 lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl~~liy~llP~l~LltG~~iip~~s~~~~~~~ 907 (917)
++||.||++|.+|++.....+.. ..+.++.+++.+...+..+...++.+++.++++++.++|..+...+...++.++
T Consensus 276 ~~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (439)
T TIGR03111 276 YTQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLIYI 352 (439)
T ss_pred HHHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999974333332 344666666655444455556778788888888887777655443333334444
Q ss_pred HHH
Q 002480 908 ISD 910 (917)
Q Consensus 908 i~~ 910 (917)
+.+
T Consensus 353 ~~~ 355 (439)
T TIGR03111 353 LYV 355 (439)
T ss_pred HHH
Confidence 433
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=1.9e-27 Score=266.30 Aligned_cols=230 Identities=25% Similarity=0.329 Sum_probs=165.3
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCC
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepra 442 (917)
...|.|.|+||+|| |+ ..+.+|+.|+++++|| ++.++|+|||+++-|.+.+.+
T Consensus 51 ~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~--------------------- 103 (420)
T PRK11204 51 KEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR--------------------- 103 (420)
T ss_pred CCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 56899999999999 76 6789999999999999 588999999998744322211
Q ss_pred hhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCC
Q 002480 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (917)
Q Consensus 443 Pe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 522 (917)
+++
T Consensus 104 ----------------------------------------~~~------------------------------------- 106 (420)
T PRK11204 104 ----------------------------------------LAA------------------------------------- 106 (420)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 110
Q ss_pred CCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCcc
Q 002480 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKK 601 (917)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~k 601 (917)
+.|++.++.++++ ..||+|+|.+++ .+++|||+++|+|.+ +.|++|++++..| .|| +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~----~a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAA----AARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHH----HcCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----C
Confidence 0134667765552 359999999999 478999999999996 7999999999988 577 8
Q ss_pred EEEEecCccccCCCccccccchhh----hhHhhhccccccCCCccc-cccCcchhhhhhcCCCCCCCCCCCCCcCCCCCC
Q 002480 602 ICYVQFPQRFDGIDRHDRYSNRNV----VFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPK 676 (917)
Q Consensus 602 va~VQ~PQ~F~nid~~Dryan~~~----vFfdi~~~glDg~qgp~y-vGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~ 676 (917)
++.||...+..|... ..+..+. .++....++....+...+ .|++++|
T Consensus 165 v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-------------------------- 216 (420)
T PRK11204 165 VGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAF-------------------------- 216 (420)
T ss_pred eEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeee--------------------------
Confidence 999999777654321 1111111 111111111111111111 2333344
Q ss_pred ccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCC
Q 002480 677 WCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGAS 756 (917)
Q Consensus 677 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 756 (917)
++++++++||+.+
T Consensus 217 ----------------------------------------------------------------rr~~l~~vgg~~~--- 229 (420)
T PRK11204 217 ----------------------------------------------------------------RKSALHEVGYWST--- 229 (420)
T ss_pred ----------------------------------------------------------------eHHHHHHhCCCCC---
Confidence 4444556786543
Q ss_pred hhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhc
Q 002480 757 TASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 836 (917)
Q Consensus 757 ~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~ 836 (917)
+.++||++++++|+.+||+++|+ |+..+ +++.|+|++++++||.||++
T Consensus 230 ------------------------------~~~~ED~~l~~rl~~~G~~i~~~-p~~~~-~~~~p~t~~~~~~Qr~RW~~ 277 (420)
T PRK11204 230 ------------------------------DMITEDIDISWKLQLRGWDIRYE-PRALC-WILMPETLKGLWKQRLRWAQ 277 (420)
T ss_pred ------------------------------CcccchHHHHHHHHHcCCeEEec-cccEE-EeECcccHHHHHHHHHHHhc
Confidence 57899999999999999999999 66554 89999999999999999999
Q ss_pred hhHHHHHhh
Q 002480 837 GSVEILLSR 845 (917)
Q Consensus 837 G~lQillsr 845 (917)
|.+|.++..
T Consensus 278 G~~~~l~~~ 286 (420)
T PRK11204 278 GGAEVLLKN 286 (420)
T ss_pred CHHHHHHHH
Confidence 999999853
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=5.2e-26 Score=262.57 Aligned_cols=265 Identities=19% Similarity=0.204 Sum_probs=181.5
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCC
Q 002480 364 DLADIDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (917)
Q Consensus 364 ~lP~VDVfV~T~dP~kEpp~v~~nTvls~l-a~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepra 442 (917)
..|.|+|+||++| |. .++.+||.+++ ++||| ++.|+|.||+..+-|.+.+.+.+ +
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~---~--------------- 119 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA---A--------------- 119 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH---H---------------
Confidence 4899999999999 87 79999999975 78996 79999999999886655443310 0
Q ss_pred hhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCC
Q 002480 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (917)
Q Consensus 443 Pe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 522 (917)
.|
T Consensus 120 -------------------------------------------------------------------~~----------- 121 (504)
T PRK14716 120 -------------------------------------------------------------------RY----------- 121 (504)
T ss_pred -------------------------------------------------------------------HC-----------
Confidence 01
Q ss_pred CCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhc--ccCCC---CEEEEecCCCCCCcHHHHHHHHHhhcCCC
Q 002480 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSA--VISNA---PYLLNVDCDHYINNSKALREAMCFMMDPT 597 (917)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa--~ltng---p~Il~lDcDhyip~~~~Lr~amcff~Dp~ 597 (917)
|++..+. ..++| .+.||+|||.+++... ....| ++|+++|||.+ ++|++|+....++.|
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 1222222 12222 3689999999987421 01234 99999999997 799999976555433
Q ss_pred CCccEEEEecCccccCCCcccc----ccchhhhhHhhhccccccCCCcc-ccccCcchhhhhhcCCCCCCCCCCCCCcCC
Q 002480 598 SGKKICYVQFPQRFDGIDRHDR----YSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (917)
Q Consensus 598 ~g~kva~VQ~PQ~F~nid~~Dr----yan~~~vFfdi~~~glDg~qgp~-yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~ 672 (917)
.++||.|....+.+.+.- |..+...++...++.++.+++++ ..|+|++|||++|.-
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 468999987665433322 22222222334466678888765 589999999998820
Q ss_pred CCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCC
Q 002480 673 CLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVP 752 (917)
Q Consensus 673 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p 752 (917)
++.+.||.
T Consensus 247 -----------------------------------------------------------------------l~~~~GG~- 254 (504)
T PRK14716 247 -----------------------------------------------------------------------LAAERGGQ- 254 (504)
T ss_pred -----------------------------------------------------------------------HHhhcCCC-
Confidence 00122431
Q ss_pred CCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCC-------------Cccccc
Q 002480 753 TGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR-------------PAFKGS 819 (917)
Q Consensus 753 ~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~-------------~Af~G~ 819 (917)
+|..+++|||+++|++|+.+|||++|+.... .+++++
T Consensus 255 ------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~ 304 (504)
T PRK14716 255 ------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREF 304 (504)
T ss_pred ------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccccccc
Confidence 2666899999999999999999999994321 124588
Q ss_pred CCCCHHHHHHHhHhhhchh-HHHHHhhc--cccccccCCCCChhHHHHhhhhhh
Q 002480 820 APINLSDRLHQVLRWALGS-VEILLSRH--CPIWYGYGCGLKPLERFSYINSVV 870 (917)
Q Consensus 820 aPetl~a~lkQR~RWA~G~-lQillsr~--~PL~~g~~~~Lt~~QRL~Yl~~~l 870 (917)
+|+|++++++||.||+.|. +|.....- .++. .+.+.|.+|.+.+..++
T Consensus 305 ~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 305 FPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred CccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 9999999999999999995 78874211 1111 23467888887765443
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.94 E-value=4.6e-26 Score=230.97 Aligned_cols=229 Identities=37% Similarity=0.611 Sum_probs=177.8
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhh
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~ 445 (917)
|.|.|+||++| |++..+..++.|+++.+||.+++.++|+|||.++-|.+ +.+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-------~~~------------------ 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA-------LAA------------------ 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH-------HHH------------------
Confidence 67999999999 88889999999999999999889999999998873322 111
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 002480 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (917)
Q Consensus 446 yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~ 525 (917)
++..+
T Consensus 53 ------------------------------------~~~~~--------------------------------------- 57 (234)
T cd06421 53 ------------------------------------ELGVE--------------------------------------- 57 (234)
T ss_pred ------------------------------------Hhhcc---------------------------------------
Confidence 01000
Q ss_pred cccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcC-CCCCccEEE
Q 002480 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD-PTSGKKICY 604 (917)
Q Consensus 526 d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~D-p~~g~kva~ 604 (917)
..+.|+.+++ +.+.|+||+|.+++ ..+++||+++|+|.+ ++|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~----~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALA----HTTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHH----hCCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0245666655 45789999999999 468999999999997 699999999999876 6 7999
Q ss_pred EecCccccCCCccc----cccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCcccc
Q 002480 605 VQFPQRFDGIDRHD----RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCC 680 (917)
Q Consensus 605 VQ~PQ~F~nid~~D----ryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 680 (917)
|++++.+.+.+..+ .+......|+.....+...+....+.|++.+|||++|
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998776542 2333445555555555544555666777777777766
Q ss_pred ccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhH
Q 002480 681 CCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASL 760 (917)
Q Consensus 681 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~ 760 (917)
+++||++.
T Consensus 173 -----------------------------------------------------------------~~ig~~~~------- 180 (234)
T cd06421 173 -----------------------------------------------------------------DEIGGFPT------- 180 (234)
T ss_pred -----------------------------------------------------------------HHhCCCCc-------
Confidence 34676653
Q ss_pred HHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHH
Q 002480 761 LNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (917)
Q Consensus 761 l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQ 840 (917)
..+.||++++++|+.+||+++|+. .... +++.|.+++++++||.||.+|.+|
T Consensus 181 --------------------------~~~~eD~~l~~r~~~~g~~i~~~~-~~~~-~~~~~~~~~~~~~q~~rw~~~~~~ 232 (234)
T cd06421 181 --------------------------DSVTEDLATSLRLHAKGWRSVYVP-EPLA-AGLAPETLAAYIKQRLRWARGMLQ 232 (234)
T ss_pred --------------------------cceeccHHHHHHHHHcCceEEEec-Cccc-cccCCccHHHHHHHHHHHhcCCee
Confidence 356799999999999999999994 4444 799999999999999999999998
Q ss_pred HH
Q 002480 841 IL 842 (917)
Q Consensus 841 il 842 (917)
++
T Consensus 233 ~~ 234 (234)
T cd06421 233 IL 234 (234)
T ss_pred eC
Confidence 64
No 22
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.94 E-value=1.6e-25 Score=229.78 Aligned_cols=228 Identities=22% Similarity=0.319 Sum_probs=162.7
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhh
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~ 445 (917)
|.|.|+||+|| |. ..+..+|.|+++++||.+++.|+|+|| +++-|++.+.+. .+ +
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~~-------~---------- 55 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---VE-------E---------- 55 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---HH-------H----------
Confidence 57999999999 86 688999999999999999999999998 666555543321 00 0
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 002480 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (917)
Q Consensus 446 yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~ 525 (917)
| .
T Consensus 56 ---------------------------~---~------------------------------------------------ 57 (232)
T cd06437 56 ---------------------------Y---A------------------------------------------------ 57 (232)
T ss_pred ---------------------------H---h------------------------------------------------
Confidence 0 0
Q ss_pred cccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE
Q 002480 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (917)
Q Consensus 526 d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V 605 (917)
+.-+++.++.+.+++ ++||+|+|++++ ..+++||+++|+|.+ +.|++|++++.++.|| ++++|
T Consensus 58 ----~~~~~i~~~~~~~~~----G~k~~a~n~g~~----~a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 58 ----AQGVNIKHVRRADRT----GYKAGALAEGMK----VAKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred ----hcCCceEEEECCCCC----CCchHHHHHHHH----hCCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 001257788877743 469999999999 579999999999997 7999999988888887 79999
Q ss_pred ecCccccCCCccc--ccc-chhhhhHhhhccccccCCCcc-ccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 002480 606 QFPQRFDGIDRHD--RYS-NRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (917)
Q Consensus 606 Q~PQ~F~nid~~D--rya-n~~~vFfdi~~~glDg~qgp~-yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (917)
|.+..+.+.+.+- ++. -....+|.+...+.......+ .+|++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------------------------------- 168 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGV-------------------------------- 168 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhh--------------------------------
Confidence 9977665543221 110 011112332222222221111 2344444
Q ss_pred cccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHH
Q 002480 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 761 (917)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l 761 (917)
|++++++++||++.
T Consensus 169 ----------------------------------------------------------~rr~~~~~vgg~~~-------- 182 (232)
T cd06437 169 ----------------------------------------------------------WRKECIEDAGGWNH-------- 182 (232)
T ss_pred ----------------------------------------------------------hhHHHHHHhCCCCC--------
Confidence 44555567887754
Q ss_pred HHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchh
Q 002480 762 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (917)
Q Consensus 762 ~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~ 838 (917)
.++.||+++++||+.+||+++|+ |... ++...|+|+.++++||+||++|.
T Consensus 183 -------------------------~~~~ED~~l~~rl~~~G~~~~~~-~~~~-v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 -------------------------DTLTEDLDLSYRAQLKGWKFVYL-DDVV-VPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred -------------------------CcchhhHHHHHHHHHCCCeEEEe-ccce-eeeeCCcCHHHHHHHHHHhccCC
Confidence 35689999999999999999999 6655 48999999999999999999984
No 23
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=6.3e-25 Score=262.68 Aligned_cols=241 Identities=20% Similarity=0.294 Sum_probs=169.3
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCC
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~nTvls~l-a~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepr 441 (917)
.+.|+|.|+||++| |. .++.+||.+++ ++|||. +.|+|.+|+.++-|.+++.+
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~-------------------- 113 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDA-------------------- 113 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHH--------------------
Confidence 46799999999999 87 89999999987 799995 99999977555534332222
Q ss_pred ChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcC
Q 002480 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (917)
Q Consensus 442 aPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 521 (917)
++++ ||++
T Consensus 114 -----------------------------------------l~~~------------------------~p~~------- 121 (727)
T PRK11234 114 -----------------------------------------VCAR------------------------FPNV------- 121 (727)
T ss_pred -----------------------------------------HHHH------------------------CCCc-------
Confidence 1100 0000
Q ss_pred CCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhccc---CCC--CEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 002480 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVI---SNA--PYLLNVDCDHYINNSKALREAMCFMMDP 596 (917)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~l---tng--p~Il~lDcDhyip~~~~Lr~amcff~Dp 596 (917)
+++.+.| +| .+.||+|||.++...... +.+ +.++++|||.+ +.|++|+ .+-+|+++
T Consensus 122 ------------~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 122 ------------HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ------------EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 2333334 33 358999999998853111 133 56888999996 7999998 67888886
Q ss_pred CCCccEEEEecCccccCCCccccc----cchhhhhHhhhccccccCCCcc-ccccCcchhhhhhcCCCCCCCCCCCCCcC
Q 002480 597 TSGKKICYVQFPQRFDGIDRHDRY----SNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALYGYDAPVKKKPPRKTC 671 (917)
Q Consensus 597 ~~g~kva~VQ~PQ~F~nid~~Dry----an~~~vFfdi~~~glDg~qgp~-yvGTgcv~RR~ALyG~~p~~~~~~~~~~~ 671 (917)
+ ++||.|..-.+...+... ..+....+...+++++.++|++ +.|+|++|.|++|
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l---------------- 241 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV---------------- 241 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH----------------
Confidence 4 899999663322222222 2333344456678888887764 5788888844433
Q ss_pred CCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhC-C
Q 002480 672 NCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAG-G 750 (917)
Q Consensus 672 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G 750 (917)
+++.+.| |
T Consensus 242 -----------------------------------------------------------------------~al~~~ggg 250 (727)
T PRK11234 242 -----------------------------------------------------------------------TALLEDGDG 250 (727)
T ss_pred -----------------------------------------------------------------------HHHHHhcCC
Confidence 1123445 4
Q ss_pred CCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCC------------------
Q 002480 751 VPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPK------------------ 812 (917)
Q Consensus 751 ~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~------------------ 812 (917)
+ +|..+++|||+++|++|+.+||+++|+...
T Consensus 251 ~-------------------------------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~ 299 (727)
T PRK11234 251 I-------------------------------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHAR 299 (727)
T ss_pred C-------------------------------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccc
Confidence 3 688899999999999999999999999511
Q ss_pred ---CCcccccCCCCHHHHHHHhHhhhch-hHHHHH
Q 002480 813 ---RPAFKGSAPINLSDRLHQVLRWALG-SVEILL 843 (917)
Q Consensus 813 ---~~Af~G~aPetl~a~lkQR~RWA~G-~lQill 843 (917)
..+++++.|+|+++.++||.||.+| .+|.+.
T Consensus 300 ~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~~ 334 (727)
T PRK11234 300 TSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGFK 334 (727)
T ss_pred cccceEEEEeCchhHHHHHHHHHHHHcccHHHHHH
Confidence 1346788999999999999999999 688875
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.92 E-value=2.9e-24 Score=222.68 Aligned_cols=232 Identities=23% Similarity=0.305 Sum_probs=165.2
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhh
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~ 445 (917)
|.|.|+||++| |+ ..+..||.|+++++||.+++.|+|.|||+++-|.+.+.+. + +
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~-------~----------- 55 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---R-------L----------- 55 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---c-------c-----------
Confidence 67999999999 86 7899999999999999888999999999987544322110 0 0
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 002480 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (917)
Q Consensus 446 yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~ 525 (917)
+.
T Consensus 56 ---------------------------------------------~~--------------------------------- 57 (241)
T cd06427 56 ---------------------------------------------PS--------------------------------- 57 (241)
T ss_pred ---------------------------------------------CC---------------------------------
Confidence 00
Q ss_pred cccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE
Q 002480 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (917)
Q Consensus 526 d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V 605 (917)
-.+++++.+.+ ...|++|+|++++ .++|+||+.+|+|.+ ..+++|.+++.+|.+. ..++++|
T Consensus 58 ------~~~i~~~~~~~-----~~G~~~a~n~g~~----~a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 58 ------IFRVVVVPPSQ-----PRTKPKACNYALA----FARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred ------CeeEEEecCCC-----CCchHHHHHHHHH----hcCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 01244443322 2479999999999 578999999999997 7999999999988621 1289999
Q ss_pred ecCccccCCCccc--c-ccchhhhhHhhhccccccCCCccc-cccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 002480 606 QFPQRFDGIDRHD--R-YSNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (917)
Q Consensus 606 Q~PQ~F~nid~~D--r-yan~~~vFfdi~~~glDg~qgp~y-vGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (917)
|.+..+++...+- + +......+|...+++....+.+.. .|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------------------------------- 166 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSN--------------------------------- 166 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchH---------------------------------
Confidence 9988777543221 0 111111223333343333322221 23333
Q ss_pred cccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHH
Q 002480 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 761 (917)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l 761 (917)
+|++++++++||+..
T Consensus 167 ---------------------------------------------------------~~rr~~~~~vgg~~~-------- 181 (241)
T cd06427 167 ---------------------------------------------------------HFRTDVLRELGGWDP-------- 181 (241)
T ss_pred ---------------------------------------------------------HhhHHHHHHcCCCCc--------
Confidence 444555567787643
Q ss_pred HHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHH
Q 002480 762 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 841 (917)
Q Consensus 762 ~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQi 841 (917)
..++||++++++++.+||+++|+ +.. ++.+.|+|++.+++||.||+.|.+|+
T Consensus 182 -------------------------~~~~eD~~l~~rl~~~G~r~~~~-~~~--~~~~~~~~~~~~~~q~~Rw~~g~~~~ 233 (241)
T cd06427 182 -------------------------FNVTEDADLGLRLARAGYRTGVL-NST--TLEEANNALGNWIRQRSRWIKGYMQT 233 (241)
T ss_pred -------------------------ccchhhHHHHHHHHHCCceEEEe-ccc--ccccCcHhHHHHHHHHHHHhccHHHH
Confidence 35689999999999999999999 543 36899999999999999999999999
Q ss_pred HHh
Q 002480 842 LLS 844 (917)
Q Consensus 842 lls 844 (917)
+..
T Consensus 234 ~~~ 236 (241)
T cd06427 234 WLV 236 (241)
T ss_pred HHH
Confidence 974
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.92 E-value=6.8e-24 Score=217.07 Aligned_cols=174 Identities=30% Similarity=0.458 Sum_probs=122.5
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCC
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~ni 614 (917)
+.++..++ +.+.||||+|.+++... .+++||+++|+|.. ..|++|.+++.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~----~~G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEP----LPGAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCC----CCCCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 55666554 34569999999998532 35899999999986 7999999999998776 79999998765432
Q ss_pred Ccccccc----chhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCcccccccccccccc
Q 002480 615 DRHDRYS----NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKK 690 (917)
Q Consensus 615 d~~Drya----n~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 690 (917)
.. ..+. -....+|...+......+..+..|+++++||+++
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~----------------------------------- 170 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSAL----------------------------------- 170 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHH-----------------------------------
Confidence 11 1111 0011122222222222223334455555555544
Q ss_pred ccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcc
Q 002480 691 GKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISC 770 (917)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc 770 (917)
.++||++.
T Consensus 171 -------------------------------------------------------~~iGgf~~----------------- 178 (236)
T cd06435 171 -------------------------------------------------------DDVGGWDE----------------- 178 (236)
T ss_pred -------------------------------------------------------HHhCCCCC-----------------
Confidence 56787654
Q ss_pred cccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHhhc
Q 002480 771 GYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRH 846 (917)
Q Consensus 771 ~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQillsr~ 846 (917)
....||++++++++.+||++.|+ |.... +...|.|+.++++||+||++|++|++. +|
T Consensus 179 ----------------~~~~eD~dl~~r~~~~G~~~~~~-~~~~~-~~~~~~~~~~~~~q~~rw~~g~~~~~~-~~ 235 (236)
T cd06435 179 ----------------WCITEDSELGLRMHEAGYIGVYV-AQSYG-HGLIPDTFEAFKKQRFRWAYGAVQILK-KH 235 (236)
T ss_pred ----------------ccccchHHHHHHHHHCCcEEEEc-chhhc-cCcCcccHHHHHHHHHHHhcchhhhhh-cc
Confidence 35689999999999999999999 54444 789999999999999999999999986 44
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.90 E-value=3.8e-24 Score=217.41 Aligned_cols=224 Identities=29% Similarity=0.451 Sum_probs=136.5
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhh
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~ 445 (917)
|.|.|+||++| |+. .+..||.|+++++|| ++.++|+||+..+-|.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 764 999999999999995 5999999999876322111
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 002480 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (917)
Q Consensus 446 yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~ 525 (917)
+++++. .|.
T Consensus 49 -----------------------------------~~~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 49 -----------------------------------RALAAR---YPR--------------------------------- 57 (228)
T ss_dssp -----------------------------------HHHHHT---TGG---------------------------------
T ss_pred -----------------------------------HHHHHH---cCC---------------------------------
Confidence 111110 000
Q ss_pred cccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE
Q 002480 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (917)
Q Consensus 526 d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V 605 (917)
-++.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0356777665321 23699999999994 67999999999997 6999999999999887 89999
Q ss_pred ecCccccCCCccccccchhhhhHhh----hccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccc
Q 002480 606 QFPQRFDGIDRHDRYSNRNVVFFDI----NMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCC 681 (917)
Q Consensus 606 Q~PQ~F~nid~~Dryan~~~vFfdi----~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c 681 (917)
|++..+++ +.+ .+......++.. ...+....+.+.+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 222 222222222211 1233344445556788888888776
Q ss_pred cccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHH
Q 002480 682 CRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLL 761 (917)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l 761 (917)
+++||++.
T Consensus 172 ----------------------------------------------------------------~~~g~fd~-------- 179 (228)
T PF13641_consen 172 ----------------------------------------------------------------EEVGGFDP-------- 179 (228)
T ss_dssp ----------------------------------------------------------------HHH-S--S--------
T ss_pred ----------------------------------------------------------------HHhCCCCC--------
Confidence 35666542
Q ss_pred HHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhch
Q 002480 762 NEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 837 (917)
Q Consensus 762 ~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G 837 (917)
..+.||+++++++..+||+++|+ |... ++...|.|++++++||.||++|
T Consensus 180 -------------------------~~~~eD~~l~~r~~~~G~~~~~~-~~~~-v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 -------------------------FILGEDFDLCLRLRAAGWRIVYA-PDAL-VYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp -------------------------SSSSHHHHHHHHHHHTT--EEEE-EEEE-EEE--SSSTHHHHHHHHHHH--
T ss_pred -------------------------CCcccHHHHHHHHHHCCCcEEEE-CCcE-EEEeCCCCHHHHHHHHhccCcC
Confidence 46679999999999999999999 5543 4899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.86 E-value=4.4e-20 Score=219.66 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=127.4
Q ss_pred CCCchhhhHHHHHhh---cccCCCCE--EEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCcc-ccCCCcc---c
Q 002480 548 HHKKAGAMNALIRVS---AVISNAPY--LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQR-FDGIDRH---D 618 (917)
Q Consensus 548 hh~KAGALNallrvS---a~ltngp~--Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~-F~nid~~---D 618 (917)
...||.|||.++... ...+.+.| |+++|||.+ ++|++|+. |-|+++. + -+||.|=. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 457999999988742 11235555 999999996 89999985 5666643 1 36998721 1111111 2
Q ss_pred cccchhhhhHhhhccccccCCCccc-cccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccC
Q 002480 619 RYSNRNVVFFDINMKGLDGIQGPIY-VGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKN 697 (917)
Q Consensus 619 ryan~~~vFfdi~~~glDg~qgp~y-vGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 697 (917)
-|+.+....|+..|+++..++|++. -|||++|||.||--
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~---------------------------------------- 251 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA---------------------------------------- 251 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH----------------------------------------
Confidence 3666777888888999999999887 67999999999821
Q ss_pred CcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCc
Q 002480 698 KDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTD 777 (917)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~ 777 (917)
+.+.||.
T Consensus 252 -----------------------------------------------l~~~gg~-------------------------- 258 (703)
T PRK15489 252 -----------------------------------------------LMKERGN-------------------------- 258 (703)
T ss_pred -----------------------------------------------HHHhcCC--------------------------
Confidence 1223432
Q ss_pred cccccCeecccccchHHHHHHHHhCCcEEEEEcC---------------------CCCcccccCCCCHHHHHHHhHhhhc
Q 002480 778 WGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIP---------------------KRPAFKGSAPINLSDRLHQVLRWAL 836 (917)
Q Consensus 778 wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p---------------------~~~Af~G~aPetl~a~lkQR~RWA~ 836 (917)
.+|..+++|||+++|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||..
T Consensus 259 ----~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~ 334 (703)
T PRK15489 259 ----QPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVL 334 (703)
T ss_pred ----CCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHh
Confidence 158889999999999999999999999321 1356688999999999999999999
Q ss_pred hhH-HHHH
Q 002480 837 GSV-EILL 843 (917)
Q Consensus 837 G~l-Qill 843 (917)
|-. |...
T Consensus 335 Gi~~q~~~ 342 (703)
T PRK15489 335 GIAFQGWE 342 (703)
T ss_pred HHHHhhHH
Confidence 988 7753
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.86 E-value=1.4e-21 Score=204.78 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=106.9
Q ss_pred cCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCccEEEEecCccccCCCccc--cccc-hhhhhHhhhccccccCCC
Q 002480 565 ISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQFPQRFDGIDRHD--RYSN-RNVVFFDINMKGLDGIQG 640 (917)
Q Consensus 565 ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~kva~VQ~PQ~F~nid~~D--ryan-~~~vFfdi~~~glDg~qg 640 (917)
.++++||+++|+|.+ ..+++|++++..| .|| +++-||..+...|...+- .+.+ +...++-....+...++.
T Consensus 71 ~a~~e~i~~~DaD~~-~~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~ 145 (244)
T cd04190 71 PDDPEFILLVDADTK-FDPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGF 145 (244)
T ss_pred cCCCCEEEEECCCCc-CCHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCc
Confidence 478999999999997 6999999999988 688 799999988776653221 1111 111111111122222332
Q ss_pred -ccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhccccccc
Q 002480 641 -PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDN 719 (917)
Q Consensus 641 -p~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (917)
....|++.+|||++|..... .|.. ..+++.
T Consensus 146 ~~~~~G~~~~~R~~~l~~~~~------------~~~~--~~~~~~----------------------------------- 176 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGDNG------------GKGP--LLDYAY----------------------------------- 176 (244)
T ss_pred eEECCCceEEEEehhhcCCcc------------cccc--chhhcc-----------------------------------
Confidence 34568888999999954210 0000 000000
Q ss_pred ccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHH
Q 002480 720 EKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKM 799 (917)
Q Consensus 720 ~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rL 799 (917)
.++++.+ |+ +....+++||++++++|
T Consensus 177 ---------------------~~~~~~~-~~--------------------------------~~~~~~~~ED~~l~~~l 202 (244)
T cd04190 177 ---------------------LTNTVDS-LH--------------------------------KKNNLDLGEDRILCTLL 202 (244)
T ss_pred ---------------------ccCcccc-hH--------------------------------HHHHHhHhcccceeHHH
Confidence 0000001 10 11224789999999999
Q ss_pred HhCCcEEEE--EcCCCCcccccCCCCHHHHHHHhHhhhchhHH
Q 002480 800 HCHGWRSVY--CIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (917)
Q Consensus 800 h~~GWrsvY--~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQ 840 (917)
..+||++.| + |...+ +.++|+|++++++||+||++|++.
T Consensus 203 ~~~G~~~~~~~~-~~a~~-~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 203 LKAGPKRKYLYV-PGAVA-ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred hccCCccEEEEe-cccEE-EEECCCCHHHHHHHhHhhhccccc
Confidence 999999999 7 55544 899999999999999999999863
No 29
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.84 E-value=2.7e-19 Score=199.36 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=156.1
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCC
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepra 442 (917)
...|.|.|+||++| |.+ .+.+++.|++++|||. +.|+|.||++++-|.+.+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~--------------------- 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR--------------------- 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH---------------------
Confidence 34799999999999 875 5789999999999995 88999999888744332211
Q ss_pred hhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCC
Q 002480 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (917)
Q Consensus 443 Pe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~ 522 (917)
+.+ .||.
T Consensus 91 ----------------------------------------~~~------------------------~~p~--------- 97 (373)
T TIGR03472 91 ----------------------------------------LRA------------------------DFPD--------- 97 (373)
T ss_pred ----------------------------------------HHH------------------------hCCC---------
Confidence 110 0000
Q ss_pred CCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccE
Q 002480 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKI 602 (917)
Q Consensus 523 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kv 602 (917)
.++.++...++.| .+.|++|+|++++ .+.+++|+++|+|.. +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~----~a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLP----HARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHH----hccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1356665444332 4579999999887 479999999999996 7999999999999888 79
Q ss_pred EEEecCccccCCCccccccchh-hhhHhh-hcccc---ccCCC-ccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCC
Q 002480 603 CYVQFPQRFDGIDRHDRYSNRN-VVFFDI-NMKGL---DGIQG-PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPK 676 (917)
Q Consensus 603 a~VQ~PQ~F~nid~~Dryan~~-~vFfdi-~~~gl---Dg~qg-p~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~ 676 (917)
+.|+.+.+.. +... +.++. ..+... .+++. .-.+. .+.
T Consensus 157 ~~V~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 200 (373)
T TIGR03472 157 GLVTCLYRGR--PVPG-FWSRLGAMGINHNFLPSVMVARALGRARFC--------------------------------- 200 (373)
T ss_pred ceEeccccCC--CCCC-HHHHHHHHHhhhhhhHHHHHHHhccCCccc---------------------------------
Confidence 9999864322 1111 11111 011000 00000 00000 001
Q ss_pred ccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCC
Q 002480 677 WCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGAS 756 (917)
Q Consensus 677 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~ 756 (917)
.|++..|++++++++||++..
T Consensus 201 ---------------------------------------------------------~G~~~a~RR~~l~~iGGf~~~-- 221 (373)
T TIGR03472 201 ---------------------------------------------------------FGATMALRRATLEAIGGLAAL-- 221 (373)
T ss_pred ---------------------------------------------------------cChhhheeHHHHHHcCChHHh--
Confidence 255556677777888987530
Q ss_pred hhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhc
Q 002480 757 TASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 836 (917)
Q Consensus 757 ~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~ 836 (917)
..+++||++++.++..+||++.|. |.... ....|+|++++++||.||++
T Consensus 222 -----------------------------~~~~~ED~~l~~~i~~~G~~v~~~-~~~v~-~~~~~~s~~~~~~q~~RW~r 270 (373)
T TIGR03472 222 -----------------------------AHHLADDYWLGELVRALGLRVVLA-PVVVD-TDVHETSFATLLAHELRWSR 270 (373)
T ss_pred -----------------------------cccchHHHHHHHHHHHcCCeEEec-chhhh-cCCCccCHHHHHHHHHHHHh
Confidence 146789999999999999999998 44433 67778999999999999985
Q ss_pred hhH
Q 002480 837 GSV 839 (917)
Q Consensus 837 G~l 839 (917)
..-
T Consensus 271 ~~~ 273 (373)
T TIGR03472 271 TIR 273 (373)
T ss_pred hhh
Confidence 554
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=4.6e-20 Score=185.79 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=151.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhh
Q 002480 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (917)
Q Consensus 370 VfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~ 449 (917)
|+|||+| |+ ..+..||.|++.++||.+++.|+|+|||+++-|.+.+++ +
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~----~----------------------- 49 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEF----A----------------------- 49 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHH----H-----------------------
Confidence 6899998 75 789999999999999998899999999988744331110 0
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccccC
Q 002480 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (917)
Q Consensus 450 k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~~~ 529 (917)
+ +
T Consensus 50 ---------------------------------~--~------------------------------------------- 51 (229)
T cd04192 50 ---------------------------------A--A------------------------------------------- 51 (229)
T ss_pred ---------------------------------H--h-------------------------------------------
Confidence 0 0
Q ss_pred CCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCc
Q 002480 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQ 609 (917)
Q Consensus 530 ~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ 609 (917)
...+++.++.++. + ....|+.|+|.++. .++++||+++|+|.+ +.|++|++.+.+|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~-~--~~~g~~~a~n~g~~----~~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR-V--SISGKKNALTTAIK----AAKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC-c--ccchhHHHHHHHHH----HhcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012455554443 1 23678999999998 478999999999996 6999999999987665 577888888
Q ss_pred cccCCCcc-ccccchhhhhHhhhccccccCCCc-cccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccc
Q 002480 610 RFDGIDRH-DRYSNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (917)
Q Consensus 610 ~F~nid~~-Dryan~~~vFfdi~~~glDg~qgp-~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 687 (917)
.+...+.. ..+..-...+......+..+++.+ +..|++.+|||+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~---------------------------------- 165 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKE---------------------------------- 165 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHH----------------------------------
Confidence 77622211 111111111111111111222222 223444444444
Q ss_pred cccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHh
Q 002480 688 SKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHV 767 (917)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v 767 (917)
++.++||++..
T Consensus 166 --------------------------------------------------------~~~~~ggf~~~------------- 176 (229)
T cd04192 166 --------------------------------------------------------AFFEVGGFEGN------------- 176 (229)
T ss_pred --------------------------------------------------------HHHHhcCCccc-------------
Confidence 44567887541
Q ss_pred hcccccccCccccccCeecccccchHHHHHHHHhCCc-EEEEEcCCCCcccccCCCCHHHHHHHhHhhhch
Q 002480 768 ISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGW-RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 837 (917)
Q Consensus 768 ~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GW-rsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G 837 (917)
....+||.++.++++.+|| ++.|+......++...|.+++++++||+||++|
T Consensus 177 ------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2366899999999999999 998874322334789999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.83 E-value=1e-19 Score=183.17 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=146.0
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhh
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~ 445 (917)
|.|.|+||+|| |.. .+..+|.|+++.+||. +.++|.|||+++-|.+.+.+. ++++
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~----------~~~~--------- 55 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKL----------IAKY--------- 55 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHH----------HHHC---------
Confidence 67999999999 765 4789999999999985 899999999987443322210 0000
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 002480 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (917)
Q Consensus 446 yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~ 525 (917)
|.
T Consensus 56 ------------------------------------------------------------------~~------------ 57 (196)
T cd02520 56 ------------------------------------------------------------------PN------------ 57 (196)
T ss_pred ------------------------------------------------------------------CC------------
Confidence 00
Q ss_pred cccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE
Q 002480 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (917)
Q Consensus 526 d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V 605 (917)
-++.|+...+..| ...|++|||++++ .++++||+++|+|.. ..|++|++.+..|.+| .++.|
T Consensus 58 -------~~~~~~~~~~~~g--~~~~~~~~n~g~~----~a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 58 -------VDARLLIGGEKVG--INPKVNNLIKGYE----EARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred -------CcEEEEecCCcCC--CCHhHHHHHHHHH----hCCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 0233444443222 3368999999998 578999999999996 6999999999998887 57788
Q ss_pred ecCccccCCCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccc
Q 002480 606 QFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSR 685 (917)
Q Consensus 606 Q~PQ~F~nid~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~ 685 (917)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 45677888888877
Q ss_pred cccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHH
Q 002480 686 KKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAI 765 (917)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai 765 (917)
+++||++.
T Consensus 137 ------------------------------------------------------------~~~ggf~~------------ 144 (196)
T cd02520 137 ------------------------------------------------------------DAIGGFEA------------ 144 (196)
T ss_pred ------------------------------------------------------------HhccChHH------------
Confidence 23465431
Q ss_pred HhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhc
Q 002480 766 HVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 836 (917)
Q Consensus 766 ~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~ 836 (917)
....+.||+++++++..+||++.|+ |... ++...|.+++++++||.||++
T Consensus 145 -------------------~~~~~~eD~~l~~rl~~~G~~i~~~-~~~~-~~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 145 -------------------FADYLAEDYFLGKLIWRLGYRVVLS-PYVV-MQPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred -------------------HhHHHHHHHHHHHHHHHcCCeEEEc-chhe-eccCCcccHHHHHHHHHHHhc
Confidence 0124579999999999999999999 5544 479999999999999999986
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.80 E-value=1.9e-18 Score=176.20 Aligned_cols=168 Identities=23% Similarity=0.250 Sum_probs=111.7
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhh
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVF 627 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vF 627 (917)
+..|++|+|.+++ .+.++||+++|+|.+ +.+++|++++..|.|| +++.|+..+.+.+.+.. .+......+
T Consensus 62 ~~g~~~a~n~g~~----~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~~-~~~~~~~~~ 131 (235)
T cd06434 62 HPGKRRALAEGIR----HVTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPRDS-KWSFLAAEY 131 (235)
T ss_pred CCChHHHHHHHHH----HhCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCccc-HHHHHHHHH
Confidence 4569999999998 368999999999997 7999999999998887 79999999888766422 111111111
Q ss_pred Hhh----hccccccCCC-ccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchh
Q 002480 628 FDI----NMKGLDGIQG-PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSK 702 (917)
Q Consensus 628 fdi----~~~glDg~qg-p~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 702 (917)
+.. ..+.....++ ....|...++||++|....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~------------------------------------------- 168 (235)
T cd06434 132 LERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFL------------------------------------------- 168 (235)
T ss_pred HHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhh-------------------------------------------
Confidence 111 0111111121 1223444567777763110
Q ss_pred hhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCcccccc
Q 002480 703 QIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEI 782 (917)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~ev 782 (917)
++++ + .. .-.+|.+
T Consensus 169 --------------~~~~---------~----------~~---~~~~~~~------------------------------ 182 (235)
T cd06434 169 --------------FLEE---------F----------TN---ETFMGRR------------------------------ 182 (235)
T ss_pred --------------hHHH---------h----------hh---hhhcCCC------------------------------
Confidence 0000 0 00 0112221
Q ss_pred CeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHH
Q 002480 783 GWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVE 840 (917)
Q Consensus 783 GW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQ 840 (917)
....||.+++.+++.+||+++|+ +...+ +...|.++.++++||.||++|.++
T Consensus 183 ----~~~~eD~~l~~~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~q~~Rw~~~~~~ 234 (235)
T cd06434 183 ----LNAGDDRFLTRYVLSHGYKTVYQ-YTSEA-YTETPENYKKFLKQQLRWSRSNWR 234 (235)
T ss_pred ----CCcCchHHHHHHHHHCCCeEEEe-cCCeE-EEEcchhHHHHHHHhhhhhhcccC
Confidence 25689999999999999999999 55555 678999999999999999999853
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.78 E-value=8.7e-18 Score=173.64 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=97.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCC
Q 002480 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (917)
Q Consensus 362 ~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepr 441 (917)
....|.|.|+|||+| |+ ..+..++.|+++++||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 356889999999999 75 678999999999999988899999999998743221111
Q ss_pred ChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcC
Q 002480 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (917)
Q Consensus 442 aPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 521 (917)
+.+
T Consensus 81 -----------------------------------------~~~------------------------------------ 83 (251)
T cd06439 81 -----------------------------------------YAD------------------------------------ 83 (251)
T ss_pred -----------------------------------------Hhh------------------------------------
Confidence 000
Q ss_pred CCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCcc
Q 002480 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKK 601 (917)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~k 601 (917)
. ++.++..++ ...|++|+|.+++ ..++++|+++|+|.+ +.+++|++.+..|.++ +
T Consensus 84 ---------~--~v~~i~~~~-----~~g~~~a~n~gi~----~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 84 ---------K--GVKLLRFPE-----RRGKAAALNRALA----LATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ---------C--cEEEEEcCC-----CCChHHHHHHHHH----HcCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 0 134444433 2469999999999 467899999999997 5799999999999776 6
Q ss_pred EEEEecCccccCC
Q 002480 602 ICYVQFPQRFDGI 614 (917)
Q Consensus 602 va~VQ~PQ~F~ni 614 (917)
+++|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8889887665543
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.75 E-value=1.4e-16 Score=178.45 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=93.5
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCC
Q 002480 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (917)
Q Consensus 362 ~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepr 441 (917)
+...|.|.|+||++| |. ..+..++.|+++++||. ++.|+|.|||+++-|.+.+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 76 67899999999999995 589999999999854332211
Q ss_pred ChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcC
Q 002480 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (917)
Q Consensus 442 aPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~ 521 (917)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 0000 000
Q ss_pred CCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccC-CCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCc
Q 002480 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVIS-NAPYLLNVDCDHYINNSKALREAMCFMMDPTSGK 600 (917)
Q Consensus 522 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~lt-ngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~ 600 (917)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|.. +.|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01344554333221 24579999999998532111 2899999999996 7999999999998875
Q ss_pred cEEEEecC
Q 002480 601 KICYVQFP 608 (917)
Q Consensus 601 kva~VQ~P 608 (917)
++++|...
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 35555443
No 35
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.72 E-value=3.6e-16 Score=159.54 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHHh
Q 002480 789 VTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLS 844 (917)
Q Consensus 789 VTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQills 844 (917)
..||.+++++++.+|+++.|+ |.... ....+.+++.+++|+.||+.|.+|.+..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~-~~~~~-~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLS-PDIRV-YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEc-CCeEE-EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 369999999999999999999 55443 6778899999999999999999999873
No 36
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=5e-15 Score=167.53 Aligned_cols=278 Identities=21% Similarity=0.306 Sum_probs=195.4
Q ss_pred CCCCceeEEEecCCCCCCCHHHHH----HHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcC
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITA----NTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKI 438 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~----nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~i 438 (917)
.++-.-.|++|+|| |.+.-|- -|..|+.+-. -.+.+.++|+-|..++. -+|+|..+|++ +|++.+
T Consensus 141 p~~hrTAilmPiyn---Ed~~rVfAgLrA~~eSla~Tg-~~~~FD~FVLSDs~dpd--ialAEq~a~~~----l~~e~~- 209 (736)
T COG2943 141 PDLHRTAILMPIYN---EDVNRVFAGLRATYESLAATG-HAEHFDFFVLSDSRDPD--IALAEQKAWAE----LCRELG- 209 (736)
T ss_pred CcccceeEEeeccc---cCHHHHHHHHHHHHHHHHhhC-CcccceEEEEcCCCCch--hhhhHHHHHHH----HHHHhC-
Confidence 44556889999999 9887653 4445554443 34678899998888873 36677655554 565432
Q ss_pred CCCChhhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhh
Q 002480 439 EPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVF 518 (917)
Q Consensus 439 epraPe~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~ 518 (917)
T Consensus 210 -------------------------------------------------------------------------------- 209 (736)
T COG2943 210 -------------------------------------------------------------------------------- 209 (736)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCC
Q 002480 519 LGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPT 597 (917)
Q Consensus 519 l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~ 597 (917)
+++ ++.|-.|.+ |-..||||+-...|.-| +...|+++||||.++ ..+.+-+.+..| .+|
T Consensus 210 -----g~~-------~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P- 269 (736)
T COG2943 210 -----GEG-------NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP- 269 (736)
T ss_pred -----CCC-------ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC-
Confidence 001 466666655 67899999999999766 678999999999974 888888888877 577
Q ss_pred CCccEEEEecCccccCCC-ccccccc-hhhhhHhhhccccccCCC--ccccccCcchhhhhhcCCCCCCCCCCCCCcCCC
Q 002480 598 SGKKICYVQFPQRFDGID-RHDRYSN-RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNC 673 (917)
Q Consensus 598 ~g~kva~VQ~PQ~F~nid-~~Dryan-~~~vFfdi~~~glDg~qg--p~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~ 673 (917)
+.|++||--.-.|-| -.-|..+ ...|+=-+.--|+..||+ .-|.|.|++.|-+|+..
T Consensus 270 ---~aGlIQt~P~~~gg~TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~---------------- 330 (736)
T COG2943 270 ---DAGLIQTSPKASGGDTLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIE---------------- 330 (736)
T ss_pred ---CCceeecchhhcCcchHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHH----------------
Confidence 799999943333322 1122211 123444566678888887 47899999999998842
Q ss_pred CCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCC
Q 002480 674 LPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPT 753 (917)
Q Consensus 674 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~ 753 (917)
.|.-..-..+ + -+||
T Consensus 331 ------hcgLp~LpG~------------------------------------------~--------------pFgG--- 345 (736)
T COG2943 331 ------HCGLPPLPGR------------------------------------------G--------------PFGG--- 345 (736)
T ss_pred ------hcCCCCCCCC------------------------------------------C--------------CCCc---
Confidence 1111110000 0 1233
Q ss_pred CCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHh
Q 002480 754 GASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLR 833 (917)
Q Consensus 754 ~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~R 833 (917)
..++.|+.-+-.|.+.||.+--. +++...++|.|.|+-+++++-+|
T Consensus 346 ---------------------------------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRR 391 (736)
T COG2943 346 ---------------------------------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRR 391 (736)
T ss_pred ---------------------------------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhH
Confidence 35678999999999999965555 77777899999999999999999
Q ss_pred hhchhHHHHHhhccccccccCCCCChhHHHHhhhhhhhhhhHH
Q 002480 834 WALGSVEILLSRHCPIWYGYGCGLKPLERFSYINSVVYPITSI 876 (917)
Q Consensus 834 WA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl~~~lypl~sl 876 (917)
|++|++|-+. ++. .++|.|..|+.++..++.++++-
T Consensus 392 WC~GNLqh~r-----l~~--~~GlHwvsR~h~~tGVmsYlsaP 427 (736)
T COG2943 392 WCHGNLQHFR-----LFL--VKGLHWVSRAHFLTGVMSYLSAP 427 (736)
T ss_pred hhhcchhhce-----eec--cCCccHHHHHHHHHHHHHHHhhH
Confidence 9999999873 553 68999999999988777666553
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.69 E-value=3.6e-16 Score=156.36 Aligned_cols=138 Identities=30% Similarity=0.441 Sum_probs=105.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCccccccchhhhhHhhhc----cccccCCC-cccc
Q 002480 570 YLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM----KGLDGIQG-PIYV 644 (917)
Q Consensus 570 ~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dryan~~~vFfdi~~----~glDg~qg-p~yv 644 (917)
||+++|+|.. +.+++|++++.+|.|| +++.||+|..+++ ..+.+.+.+.++|.... +..+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 6899999997 7999999999999888 8999999999863 34556666666663221 11122322 2456
Q ss_pred ccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhhhhhhhhcccccccccccC
Q 002480 645 GTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSL 724 (917)
Q Consensus 645 GTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (917)
|+|.++||+||
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 77777777766
Q ss_pred CchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCc
Q 002480 725 MPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGW 804 (917)
Q Consensus 725 ~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GW 804 (917)
+++||++. ..+++||+++++++.++||
T Consensus 85 ---------------------~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~G~ 111 (193)
T PF13632_consen 85 ---------------------REVGGFDD--------------------------------PFSIGEDMDLGFRLRRAGY 111 (193)
T ss_pred ---------------------HHhCcccc--------------------------------cccccchHHHHHHHHHCCC
Confidence 35565430 4689999999999999999
Q ss_pred EEEEEcCCCCcccccCCCCHHHHHHHhHhhhchh
Q 002480 805 RSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGS 838 (917)
Q Consensus 805 rsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~ 838 (917)
++.|+ |+.. ++.++|.|+.++++||+||..|.
T Consensus 112 ~~~~~-~~~~-~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 112 RIVYV-PDAI-VYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred EEEEe-cccc-eeeeCCCCHHHHHHHHHHHHhhh
Confidence 99999 5443 48999999999999999999997
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.58 E-value=1.8e-14 Score=145.34 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=81.8
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhc-------ccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEe
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSA-------VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQ 606 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa-------~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ 606 (917)
++.++.++... ....|++|||.+++.+. .-..+++|+++|+|.. +.|++|++++.+|.|| +++.||
T Consensus 51 ~v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 46667664311 23479999999998531 0013589999999996 7999999988899888 799999
Q ss_pred cCccccCCCccc--cc-cchhhhhHhhhccccccCCCccccccCcchhhhhh
Q 002480 607 FPQRFDGIDRHD--RY-SNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (917)
Q Consensus 607 ~PQ~F~nid~~D--ry-an~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~AL 655 (917)
.+.++.|.+.+- ++ ..+...++.+++.++..++...+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999988765431 11 12233334566666666655557899999999988
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.49 E-value=2.1e-13 Score=135.85 Aligned_cols=102 Identities=20% Similarity=0.123 Sum_probs=65.7
Q ss_pred CCCchhhhHHHHHhhc-ccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccc---ccch
Q 002480 548 HHKKAGAMNALIRVSA-VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDR---YSNR 623 (917)
Q Consensus 548 hh~KAGALNallrvSa-~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~Dr---yan~ 623 (917)
...|++|+|.+++... .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+.+-. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 4579999999988531 1247999999999997 6899999999988653 346887766655433211 1112
Q ss_pred hhhhHhhhccccccCCCc-cccccCcchhhhhh
Q 002480 624 NVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL 655 (917)
Q Consensus 624 ~~vFfdi~~~glDg~qgp-~yvGTgcv~RR~AL 655 (917)
..+++.+...++..+.+. .+.|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 222333333344445543 34677777777776
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.43 E-value=3.5e-12 Score=127.04 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=88.8
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhh
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~ 445 (917)
|.|.|+|||+| |....+.+|+.|+++..||. +.|+|+|||+..-+.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH------------------------
Confidence 57999999998 76678999999999999984 78999999987622221111
Q ss_pred hhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCc
Q 002480 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (917)
Q Consensus 446 yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~ 525 (917)
.+.++
T Consensus 52 ------------------------------------~~~~~--------------------------------------- 56 (202)
T cd04184 52 ------------------------------------KYAAQ--------------------------------------- 56 (202)
T ss_pred ------------------------------------HHHhc---------------------------------------
Confidence 00000
Q ss_pred cccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCccEEE
Q 002480 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICY 604 (917)
Q Consensus 526 d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~kva~ 604 (917)
.+++.++..+. ...++.|+|.+++ .+.++||+.+|+|.+ +.+++|.+++-.| .+| ++++
T Consensus 57 ------~~~~~~~~~~~-----~~g~~~a~n~g~~----~a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREE-----NGGISAATNSALE----LATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEccc-----CCCHHHHHHHHHH----hhcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 01344444433 3467999999998 468999999999996 7999999999987 777 5677
Q ss_pred EecCcc
Q 002480 605 VQFPQR 610 (917)
Q Consensus 605 VQ~PQ~ 610 (917)
|+....
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 766444
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.36 E-value=2.2e-11 Score=121.51 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=50.9
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCccEEEEecCcccc
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRFD 612 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~-Dp~~g~kva~VQ~PQ~F~ 612 (917)
+.|+.+++. ..+++|+|.+++ .+.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~----~a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 121 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLK----HCTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEF 121 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHH----hcCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEE
Confidence 556666552 468999999999 578999999999997 79999999999884 55 678887765443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.29 E-value=1.8e-11 Score=124.18 Aligned_cols=60 Identities=20% Similarity=0.128 Sum_probs=51.5
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCC
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGID 615 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid 615 (917)
-+.|..||-++++. ...+++|+++|+|+. .+|++|++++..|.|| ++++|..+.++.+.+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 57899999999983 279999999999997 6999999999999998 799998876655443
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.24 E-value=1.8e-10 Score=113.10 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=43.1
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCccEEEEecCcccc
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFPQRFD 612 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amc-ff~Dp~~g~kva~VQ~PQ~F~ 612 (917)
..+++|+|.+++ .++++||+++|+|.. ..++.+.+.+. +..++ ++.+|.....+.
T Consensus 61 ~g~~~a~n~~~~----~a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 61 KGIYDAMNKGIA----LATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred cCHHHHHHHHHH----HcCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 368999999999 578999999999997 68899999984 44665 566676655443
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.23 E-value=2e-10 Score=123.83 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=83.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCChhhhhhh
Q 002480 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (917)
Q Consensus 370 VfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraPe~yF~~ 449 (917)
|+|||+| |++..+.+||.|+++..||.....|+|.|||+++-|.+.+.+.
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~--------------------------- 51 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEE--------------------------- 51 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHH---------------------------
Confidence 8999999 8879999999999999998666799999999987443322110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCCCccccC
Q 002480 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (917)
Q Consensus 450 k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g~~d~~~ 529 (917)
.. .
T Consensus 52 ---------------------------------~~--------------------------------------------~ 54 (299)
T cd02510 52 ---------------------------------YY--------------------------------------------K 54 (299)
T ss_pred ---------------------------------HH--------------------------------------------h
Confidence 00 0
Q ss_pred CCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 002480 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (917)
Q Consensus 530 ~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~D 595 (917)
+..|++.++..++ ...++.|.|.+++ .+.|+||+.||+|.. +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~-----n~G~~~a~N~g~~----~A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKK-----REGLIRARIAGAR----AATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCC-----CCCHHHHHHHHHH----HccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 0113466665554 2468899999999 578999999999997 699999999998754
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.23 E-value=3.7e-10 Score=114.15 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=34.9
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 002480 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (917)
Q Consensus 368 VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ 413 (917)
|.|+||++| |+. .+..++.|+++..|+ .+.|+|+|||+.+
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 764 789999999999984 6889999999876
No 46
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.20 E-value=1.8e-10 Score=115.04 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=45.9
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHh-hcCCCCCccEEEEecCcccc
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF-MMDPTSGKKICYVQFPQRFD 612 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcf-f~Dp~~g~kva~VQ~PQ~F~ 612 (917)
.+.+++|+|.++. .++|+||+++|+|.+ ..|+.|.+.+-. +.++ ..+++.....+.
T Consensus 64 ~~G~~~~~n~g~~----~~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 64 NLGVARNFESLLQ----AADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred CccHHHHHHHHHH----hCCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 3578999999988 578999999999997 689999999998 4555 677787765543
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.17 E-value=9.4e-10 Score=107.93 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=37.2
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp 596 (917)
..+++|+|.+++ .++|+||+++|+|.. +.+++|++.+-++ ++
T Consensus 65 ~~~~~~~n~g~~----~a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIA----AAKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHH----HhcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 368999999999 579999999999996 7999999999987 44
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.15 E-value=9.3e-10 Score=104.93 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=42.0
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCccEEEEecC
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFP 608 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~-Dp~~g~kva~VQ~P 608 (917)
...+++|+|.+++ ..++++|+.+|+|.+ +.+++|.+.+-.+. ++ +++.|+..
T Consensus 59 ~~g~~~a~n~~~~----~~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 59 NLGFGAGNNQGIR----EAKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred CcChHHHhhHHHh----hCCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 3468999999999 458999999999997 68999999998654 44 67777554
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.09 E-value=3.6e-09 Score=110.62 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=45.9
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecC
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFP 608 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~P 608 (917)
+.++.+.+ ...|++|+|++++ .+.|+||+.+|+|.. .++++|.+++..+.++ +..+|...
T Consensus 70 v~~~~~~~-----n~G~~~a~n~g~~----~a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPG-----KLGLGTAYIHGLK----HASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCC-----CCCHHHHHHHHHH----HcCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 45555443 2358999999998 478999999999997 7999999999988764 34555543
No 50
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.09 E-value=2.6e-09 Score=109.12 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=36.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 002480 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTF 416 (917)
Q Consensus 370 VfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf 416 (917)
|+||+|| +. ..+..|+.|+++..|| +.+.++|.|||+.+-|.
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~ 42 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSA 42 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHH
Confidence 6899998 54 7999999999999998 46899999999987543
No 51
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.08 E-value=1.9e-08 Score=117.63 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=46.5
Q ss_pred cccchHHHHHHHHhC--CcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhchhHHHHH
Q 002480 788 SVTEDILTGFKMHCH--GWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILL 843 (917)
Q Consensus 788 SVTED~~tg~rLh~~--GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G~lQill 843 (917)
.+.||=.++..|..+ |||..|+ +...| +..+|+|++.+++||+||..|++--++
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~-~~A~a-~T~aP~t~~vflsQRRRWinSTi~Nl~ 379 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYV-PSAVA-YTDAPETFSVFLSQRRRWINSTIHNLF 379 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEc-ccccc-cccCCccHHHHHHHhhhccchhHhhHh
Confidence 578999999888887 8999999 55556 799999999999999999999986543
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.04 E-value=6e-09 Score=105.60 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=46.2
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecC
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFP 608 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~P 608 (917)
+.++..++ +..+++|+|.+++ .+.|+||+.+|+|.. ..+++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~-----n~G~~~a~n~g~~----~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPG-----KRGLGSAYIEGFK----AARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCC-----CCChHHHHHHHHH----HcCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 34444444 3568999999999 477899999999986 7999999999987765 34555554
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.03 E-value=2.2e-09 Score=109.90 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=37.9
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHH
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~am 590 (917)
.+.++..++. ..+|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++
T Consensus 48 ~i~~i~~~~n-----~G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 48 KIELIHLGEN-----LGIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred cEEEEECCCc-----eehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHH
Confidence 3566666552 3499999999984321 25699999999997 6899999995
No 54
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.03 E-value=3e-09 Score=100.05 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=46.4
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCccEEEEecCcc
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFPQR 610 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amc-ff~Dp~~g~kva~VQ~PQ~ 610 (917)
++|+..++ ...|+.|+|.+++. .+++||+++|+|.+ ..+++|.+.+. ++.++ +++.|.....
T Consensus 55 ~~~~~~~~-----~~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~ 117 (180)
T cd06423 55 VLVVRDKE-----NGGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVR 117 (180)
T ss_pred EEEEEecc-----cCCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEE
Confidence 44554444 35699999999994 59999999999997 68999999944 55666 5666665443
No 55
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.02 E-value=7.5e-09 Score=103.88 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=44.8
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V 605 (917)
+.|+.-++ .+..+.++|.++...- ...++|++++|+|.+ +.+++|++++-.+.+| +++.|
T Consensus 53 i~~~~~~~-----n~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~ 112 (202)
T cd04185 53 IVYLRLPE-----NLGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL 112 (202)
T ss_pred eEEEECcc-----ccchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe
Confidence 44555444 2357888998887432 457899999999996 7899999999988776 56655
No 56
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.01 E-value=1.7e-10 Score=94.29 Aligned_cols=48 Identities=35% Similarity=1.025 Sum_probs=30.4
Q ss_pred ccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
|.+|.+++ +++|..|.+| +|+|.|||.||..-++++++.||.||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8899999999 999999999999998889999999999996
No 57
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.00 E-value=4e-10 Score=106.35 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=74.1
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~n 613 (917)
++.|+.+++ +. .+++|+|.+++ +..++||+.+|+|.+ ..+++|.+.+.++.+.. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~----~a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIK----HAKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHH----H--SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-ccccccccccc----ccceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 588998887 33 79999999999 588999999999997 57789999999998741 23444444433333
Q ss_pred CCccccccc--hhhhhHhhhccccccCCCccccccCcchhhhhhc
Q 002480 614 IDRHDRYSN--RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 656 (917)
Q Consensus 614 id~~Dryan--~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALy 656 (917)
......... ....++............+.++|.++++||++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 222221111 1223333344455666778999999999999983
No 58
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.81 E-value=7.7e-08 Score=106.59 Aligned_cols=110 Identities=12% Similarity=0.165 Sum_probs=83.8
Q ss_pred CCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcCCCCCh
Q 002480 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (917)
Q Consensus 364 ~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~iepraP 443 (917)
..|.|.|+||+|| ++ ..+..++.|+++..|+ .+.|+|.|||+++-|.+.+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~---------------------- 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH---------------------- 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH----------------------
Confidence 3578999999999 54 6889999999999997 489999999998744321111
Q ss_pred hhhhhhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCCCCCCCCCCCchhhhhhhcCCC
Q 002480 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (917)
Q Consensus 444 e~yF~~k~d~~~~~~~p~fv~err~~kreYee~kvri~~l~~~~~kvp~e~w~m~dgt~wpg~~~rdhp~~iqv~l~~~g 523 (917)
+++
T Consensus 56 ---------------------------------------~~~-------------------------------------- 58 (328)
T PRK10073 56 ---------------------------------------YAE-------------------------------------- 58 (328)
T ss_pred ---------------------------------------HHh--------------------------------------
Confidence 100
Q ss_pred CccccCCCcCcEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 002480 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (917)
Q Consensus 524 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp 596 (917)
..|++.++..+ ....++|.|.++. .+.|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~----~a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLA----VATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHH----hCCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01245566432 3468999999999 589999999999997 5899999999887644
No 59
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.80 E-value=9e-08 Score=97.29 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=41.7
Q ss_pred CchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCcc
Q 002480 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQR 610 (917)
Q Consensus 550 ~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~ 610 (917)
.|++|+|.+++ .+.|+||+.+|+|.. ..+++|.+.+..+.++ ....|.....
T Consensus 69 G~~~a~~~g~~----~a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 69 GKGGAVRAGML----AARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred CcHHHHHHHHH----HhcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 58999999999 578999999999997 7999999999987654 2344555433
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.74 E-value=3.5e-07 Score=99.62 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=42.8
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~D 595 (917)
++.|+..++ ...++.|+|.++. .++|+||+.+|+|.+ ..|+.|.+.+-++..
T Consensus 61 ri~~i~~~~-----n~G~~~a~N~gi~----~a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDI-----NSGACAVRNQAIM----LAQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCC-----CCCHHHHHHHHHH----HcCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 577776654 3468999999999 589999999999997 589999998887743
No 61
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.71 E-value=8.7e-08 Score=94.11 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=49.3
Q ss_pred EEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 002480 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (917)
Q Consensus 535 lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~n 613 (917)
+.++..++.. .|++|+|.+++ .+.|++|+++|+|-. ..+++|.+.+-.+... ...+|+.+..+.+
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~----~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFK----AARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHH----HhcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 3455444432 49999999998 578899999999986 6999999999986654 4666777655544
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.66 E-value=4.6e-07 Score=96.76 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=47.2
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEe
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQ 606 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ 606 (917)
.+.|+.-++ ....|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|.
T Consensus 46 ~i~~i~~~~-----N~G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~ 109 (281)
T TIGR01556 46 KIALIHLGD-----NQGIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG 109 (281)
T ss_pred CeEEEECCC-----CcchHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC
Confidence 466666544 236899999998842 1237899999999997 6899999999987542 22688776
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.62 E-value=1e-06 Score=93.98 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=37.5
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhHH
Q 002480 366 ADIDIFVSTVDPMKEPPLITANTVLSILAV-DYPVDKVACYVSDDGAAMLTFE 417 (917)
Q Consensus 366 P~VDVfV~T~dP~kEpp~v~~nTvls~la~-dYP~~kl~~yVsDDG~s~ltf~ 417 (917)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||+++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 56899999998 64 5789999999864 2333468999999999885543
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.55 E-value=1.4e-06 Score=80.03 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHH-hhcCCCCCccEEEEecC
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC-FMMDPTSGKKICYVQFP 608 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amc-ff~Dp~~g~kva~VQ~P 608 (917)
+..|++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +..+|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 46799999999984 58999999999997 68899988744 44555 67778776
No 65
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.51 E-value=2.7e-06 Score=92.05 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccCCCcc
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRH 617 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~nid~~ 617 (917)
-.+|.|.|.++. .+++++|+.+|+|.+ +.+++|.+++-+.+.-.. ...+++-.|..|.+.+..
T Consensus 74 f~~a~arN~g~~----~A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~~-~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 74 FSRAKARNIGAK----YARGDYLIFLDADCI-PSPDFIEKLLNHVKKLDK-NPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred cCHHHHHHHHHH----HcCCCEEEEEcCCee-eCHHHHHHHHHHHHHHhc-CCCceEEEeeeeccchhh
Confidence 378999999998 579999999999996 799999999993221110 124556667666654433
No 66
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.48 E-value=8.7e-07 Score=87.67 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=63.0
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~VQ~PQ~F~n 613 (917)
++.|+..++ ...|++|+|++++ .+.++||+.+|+|.. ..+++|.+.+..+ ++. .++.+..-.. .+
T Consensus 56 ~i~~i~~~~-----n~G~~~a~n~g~~----~a~~d~i~~~D~D~~-~~~~~l~~l~~~~-~~~--~~~v~g~~~~--~~ 120 (181)
T cd04187 56 RVKVIRLSR-----NFGQQAALLAGLD----HARGDAVITMDADLQ-DPPELIPEMLAKW-EEG--YDVVYGVRKN--RK 120 (181)
T ss_pred CEEEEEecC-----CCCcHHHHHHHHH----hcCCCEEEEEeCCCC-CCHHHHHHHHHHH-hCC--CcEEEEEecC--Cc
Confidence 355555444 3469999999998 478899999999986 6999999999874 432 2444433221 11
Q ss_pred CCccccccchhhhhHhhhccccccCCCccccccCcchhhhhhc
Q 002480 614 IDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 656 (917)
Q Consensus 614 id~~Dryan~~~vFfdi~~~glDg~qgp~yvGTgcv~RR~ALy 656 (917)
.....++.+ ..|+. ....+.+..-+...|+..++||+++.
T Consensus 121 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 111111111 11111 11222334445566777899999995
No 67
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.47 E-value=1.4e-06 Score=105.92 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=43.9
Q ss_pred cccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhch
Q 002480 788 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALG 837 (917)
Q Consensus 788 SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~G 837 (917)
+..||-.+..++..+||++-|+. ...| ..++|+++.+++.||+||..|
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a-~s~a-~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVA-ASDA-ETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred ccchhHHHHHHHHhccceeeeec-cccc-cccCcHhHHHHHHHhhhhccc
Confidence 58899999999999999999994 3344 799999999999999999999
No 68
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.42 E-value=5.6e-06 Score=92.26 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=36.2
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~D 595 (917)
..|++|+|++++ .+.|+||+++|+|.. .+++.+.+.+-.+.+
T Consensus 148 ~G~~~A~~~Gi~----~a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 148 KGKGGAVRIGML----ASRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred CChHHHHHHHHH----HccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 469999999999 468999999999996 699998888887753
No 69
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.41 E-value=1.5e-05 Score=87.10 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=47.4
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCC-EEEEecCCCCCCcHHHHHHHHHhhc-CCCCCccEEEEecCccc
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAP-YLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRF 611 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp-~Il~lDcDhyip~~~~Lr~amcff~-Dp~~g~kva~VQ~PQ~F 611 (917)
.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .+++|+.-.+.
T Consensus 57 ~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~~ 124 (305)
T COG1216 57 NVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIRN 124 (305)
T ss_pred cEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEec
Confidence 455665544333 388888877742 34544 9999999975 79999999999774 44 68888776654
Q ss_pred c
Q 002480 612 D 612 (917)
Q Consensus 612 ~ 612 (917)
+
T Consensus 125 ~ 125 (305)
T COG1216 125 Y 125 (305)
T ss_pred C
Confidence 4
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.23 E-value=6.9e-06 Score=90.63 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhc-CCCCCccEEEEec
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQF 607 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~-Dp~~g~kva~VQ~ 607 (917)
..|++|+|.++. .++|++|+.+|+|....+|++|.+.+..|. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~----~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLA----ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 479999999998 478999999999985369999999998775 77 5777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.68 E-value=0.0003 Score=78.30 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhc
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~ 594 (917)
..|++|+|++++ .+.|++|+.+|||.. ..|+.+.+.+-.+.
T Consensus 76 ~G~~~A~~~G~~----~A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFS----HVTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHH----hCCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 478999999998 478999999999997 79999999998774
No 72
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.0012 Score=61.34 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=40.0
Q ss_pred CCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 002480 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT 415 (917)
Q Consensus 365 lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~lt 415 (917)
.|.|.|+|||+| |+ ..+..+|.|++...|+. ..|.|.|||+++-|
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t 46 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGT 46 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCCh
Confidence 578999999999 65 89999999999999996 56999999999844
No 73
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.32 E-value=0.0016 Score=68.01 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCC
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp 596 (917)
...+.+.|.++. ...+++|+++|+|.. ..++.+.+...++.++
T Consensus 57 ~g~~~~~n~~~~----~a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 57 DGFGAQRNFALE----LATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred CChHHHHHHHHH----hCCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 357899999998 578899999999997 6999999999988654
No 74
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=0.0042 Score=70.17 Aligned_cols=159 Identities=26% Similarity=0.438 Sum_probs=108.3
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE-ecCccccCCCccccccchhhh
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV-QFPQRFDGIDRHDRYSNRNVV 626 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V-Q~PQ~F~nid~~Dryan~~~v 626 (917)
-+-|-.||=-+.| ....|+|++.|.|-. -.|+.+....-=||.++ |+|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~----~a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYR----AAKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHH----HhcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 4567777776777 368899999999986 49999999888888775 89998 6776554211
Q ss_pred hHhhhccccccCCCccccccCcchhhhhhcCCCCCCCCCCCCCcCCCCCCccccccccccccccccCCccCCcchhhhhh
Q 002480 627 FFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYA 706 (917)
Q Consensus 627 Ffdi~~~glDg~qgp~yvGTgcv~RR~ALyG~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (917)
|+.-+ .-+|-||. +-|-.|-| ++-. .-|.+
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~--------------n~~~---~~c~t----------------------- 245 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSG--------------NVLG---FNCST----------------------- 245 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEcc--------------cccc---ccccc-----------------------
Confidence 11111 11455542 22322211 0000 01212
Q ss_pred hhhhhhcccccccccccCCchhHHhhhcCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeec
Q 002480 707 LENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIY 786 (917)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y 786 (917)
|-|+.+++++++|.||+.. .|
T Consensus 246 ----------------------------gms~~mrK~~ld~~ggi~~----------------------------f~--- 266 (431)
T KOG2547|consen 246 ----------------------------GMSSMMRKEALDECGGISA----------------------------FG--- 266 (431)
T ss_pred ----------------------------cHHHHHHHHHHHHhccHHH----------------------------HH---
Confidence 6688899999999999643 23
Q ss_pred ccccchHHHHHHHHhCCcEEEEEcCCCCcccccCCCCHHHHHHHhHhhhc
Q 002480 787 GSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWAL 836 (917)
Q Consensus 787 ~SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPetl~a~lkQR~RWA~ 836 (917)
+.+.||+..+=.+..+||++.+..-... ...+--+...+..|-.||..
T Consensus 267 ~yLaedyFaaksllSRG~ksaist~pal--QnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 GYLAEDYFAAKSLLSRGWKSAISTHPAL--QNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchh--hhhhhhHHHHHHHHHHHhhh
Confidence 3889999999999999999999964322 46666788899999999984
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.79 E-value=0.00059 Score=75.38 Aligned_cols=48 Identities=33% Similarity=1.018 Sum_probs=44.2
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrY 88 (917)
.|..|=+.+.++ ..-|.+| -|||.|||.||..-|.+=|+.||-|+..|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 699999998776 4469999 99999999999999999999999999999
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.76 E-value=0.0068 Score=51.37 Aligned_cols=45 Identities=36% Similarity=0.963 Sum_probs=37.5
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCC--Ccccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQ--CKTRY 88 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPq--CktrY 88 (917)
+.+|.+||+.+- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 568999999974 47889999999999999999887 55655 77665
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.66 E-value=0.13 Score=58.31 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 002480 369 DIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (917)
Q Consensus 369 DVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ 413 (917)
-|+|.||| - |.-+.+|+.|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47889997 4 68999999999998755567889999999886
No 78
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.50 E-value=0.014 Score=64.93 Aligned_cols=56 Identities=21% Similarity=0.511 Sum_probs=50.4
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccccc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~k 92 (917)
..++|.+|-.+..++.+=.++|. +||-..|+.|.+--...|...||+|++..++.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 35799999999999988888888 999999999998887889999999999998764
No 79
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.00 E-value=0.43 Score=36.37 Aligned_cols=44 Identities=36% Similarity=0.850 Sum_probs=33.2
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktr 87 (917)
.|.||.+.. .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22332 235899999999987666678899999975
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.15 E-value=0.32 Score=48.41 Aligned_cols=53 Identities=32% Similarity=0.755 Sum_probs=40.4
Q ss_pred CccccccCcccccCCCCCceeecCCC-CCCcchhhHHHHHh--hcCCCCCCCcccccccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERR--EGNQACPQCKTRYKRIK 92 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC-~FPVCRpCYeyErk--eG~q~CPqCktrYkr~k 92 (917)
---|.||.|. -.-|-|.-=||| ||.||--||--=.| .-.-+||-|||-||..+
T Consensus 80 lYeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 3469999875 234557766665 99999999977666 44589999999998653
No 81
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=87.18 E-value=4.4 Score=43.07 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=36.5
Q ss_pred cEEEEeccCCCCCCCCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcC
Q 002480 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (917)
Q Consensus 534 ~lvYvsRekrpg~~hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~D 595 (917)
++.-..|.+.-|.. -|.-+++. ...|+|+++.|||-- -.|+++-+..-...+
T Consensus 64 ~i~l~pR~~klGLg-----tAy~hgl~----~a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGLG-----TAYIHGLK----HATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccch-----HHHHhhhh----hccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 56777787744322 23334455 578999999999985 789999887776554
No 82
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=83.19 E-value=1.3 Score=37.22 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=34.2
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 799999863 22 333 378999999999877766 688999998773
No 83
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=82.75 E-value=9.9 Score=42.70 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=30.7
Q ss_pred CchhhhHHHHHhhcccCCCCEEEEecCCC--CCCcHHHHHHHHHhhc
Q 002480 550 KKAGAMNALIRVSAVISNAPYLLNVDCDH--YINNSKALREAMCFMM 594 (917)
Q Consensus 550 ~KAGALNallrvSa~ltngp~Il~lDcDh--yip~~~~Lr~amcff~ 594 (917)
.|-||..-.+- .+.|.+|+..|||- .+++-..|.++|.=..
T Consensus 144 gKGgAvR~g~l----~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~ 186 (323)
T KOG2977|consen 144 GKGGAVRKGML----SSRGQKILFADADGATKFADLEKLEKALNDKA 186 (323)
T ss_pred CCCcceehhhH----hccCceEEEEcCCCCccCCCHHHHHHHHHhhc
Confidence 57777775444 47899999999994 3578888888887433
No 84
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=80.74 E-value=4.6 Score=50.68 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=53.1
Q ss_pred cccchHHHHHHHHhCCcEEEEEcCCCCcccccCCC-CHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhh
Q 002480 788 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPI-NLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 866 (917)
Q Consensus 788 SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPe-tl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl 866 (917)
.+.||+..|+....||-++.|+ +-.. .|..-+ .+..-+.=-..-+.|+=+..+||.--. .+.+|.+-.-|.+.
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~-ey~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yr---Lg~~ld~~R~LSfy 482 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHC-EYIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREYYR---LGTRLDFFRFLSFY 482 (817)
T ss_pred cccHHHHHHHHHHhcCCceeeh-hhhh--cccccccCchhhhhhHhHhcCCccchhhhHHHHH---hhccCCHHHHHHHH
Confidence 7899999999999999999999 4333 365543 444444445678999999998875322 36778887777644
No 85
>PHA02929 N1R/p28-like protein; Provisional
Probab=77.13 E-value=2.9 Score=45.61 Aligned_cols=55 Identities=20% Similarity=0.556 Sum_probs=40.2
Q ss_pred cCCccccccCcccccCC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~-~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
.....|.||.+.+.-++ ....|..-..|+=.-|+.|.. +-.+.++.||-|++++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999876443 112244445889999999995 45567899999999875
No 86
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=76.86 E-value=1.1 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=16.9
Q ss_pred chhhHHHHHhhcCCCCCCCcccccc
Q 002480 66 CRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 66 CRpCYeyErkeG~q~CPqCktrYkr 90 (917)
|.-|- .+...|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 44443 4467888999999988653
No 87
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.37 E-value=3 Score=45.08 Aligned_cols=47 Identities=34% Similarity=0.796 Sum_probs=37.9
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchhhHHHH---HhhcCCCCCCCccccc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRYK 89 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyE---rkeG~q~CPqCktrYk 89 (917)
+---|.||=|.+ =|+.|-| ||---|.||. |- ....+++||=||..-.
T Consensus 46 ~~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred Cceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 344899997764 3578888 9999999998 76 6688899999998763
No 88
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=74.30 E-value=2.5 Score=33.62 Aligned_cols=43 Identities=35% Similarity=0.732 Sum_probs=33.5
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCk 85 (917)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 77777775 9999999998654444 67999996
No 89
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=71.96 E-value=2.4 Score=34.67 Aligned_cols=27 Identities=41% Similarity=0.930 Sum_probs=21.6
Q ss_pred ccccccCcccccCCCCCceeecCCCCCCc
Q 002480 37 QICQICGDEIEITDNGEPFVACNECAFPV 65 (917)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPV 65 (917)
-+|.-||.++.++..+ -+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~~--~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSKD--VVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCCC--ceECCCCCceE
Confidence 3799999999887433 38899999876
No 90
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=71.82 E-value=3.9 Score=43.30 Aligned_cols=54 Identities=30% Similarity=0.642 Sum_probs=36.6
Q ss_pred ccccccCCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHH---------------hhcCCCCCCCccccc
Q 002480 29 TSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYER---------------REGNQACPQCKTRYK 89 (917)
Q Consensus 29 ~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyEr---------------keG~q~CPqCktrYk 89 (917)
+-+...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.=. +.+...||-|++...
T Consensus 11 ~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred eeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3344445569999999752 2334 2689999999996321 113468999999884
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.98 E-value=1.8 Score=37.14 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=34.5
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
.-|.|-.||..-.. ..+.+ ||=-||+-|+.-||-.| ||=|.||+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34567777765221 13344 59999999999999887 99999999654
No 92
>PHA02862 5L protein; Provisional
Probab=70.84 E-value=2.5 Score=42.81 Aligned_cols=49 Identities=31% Similarity=0.571 Sum_probs=32.0
Q ss_pred CccccccCcccccCCCCCceeecCCC---CCCcchhhHHHH-HhhcCCCCCCCcccccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNEC---AFPVCRPCYEYE-RREGNQACPQCKTRYKR 90 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC---~FPVCRpCYeyE-rkeG~q~CPqCktrYkr 90 (917)
+.+|.||-++ ++|..-+| .| .==|=+.|.+-= ...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999886 23445777 44 112335565322 44788999999999963
No 93
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.48 E-value=3.1 Score=31.98 Aligned_cols=26 Identities=38% Similarity=1.071 Sum_probs=19.0
Q ss_pred cccccCcccccCCCCCceeecCCCCCCc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPV 65 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPV 65 (917)
+|.-||.+|.+... +. |-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~~-~~-irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-DP-IRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-ST-SSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-Cc-EECCcCCCeE
Confidence 68999999997653 33 7999999865
No 94
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=68.15 E-value=1.1 Score=39.39 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.7
Q ss_pred hhhHHHHHhhcCCCCCCCccccccc
Q 002480 67 RPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 67 RpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5678889999999999999999644
No 95
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.50 E-value=4.6 Score=45.06 Aligned_cols=53 Identities=23% Similarity=0.564 Sum_probs=44.6
Q ss_pred ccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
+-|.+|--++-++.+ +|.--|+|+.+.|-.|..-=-.-|...||.|.+.-+.-
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888765 66777799999999999777778999999999988654
No 96
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=66.35 E-value=4.9 Score=41.37 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=34.7
Q ss_pred CCccccccCcccccCCCCCceeecCCCCC---CcchhhHHHHH-hhcCCCCCCCccccccc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYER-REGNQACPQCKTRYKRI 91 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~F---PVCRpCYeyEr-keG~q~CPqCktrYkr~ 91 (917)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-=. ..++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 466999997662 2344578 5532 34467876543 35789999999999754
No 97
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=65.87 E-value=6.1 Score=28.77 Aligned_cols=39 Identities=38% Similarity=0.935 Sum_probs=27.5
Q ss_pred ccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCC
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqC 84 (917)
|.||.+. .....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7788777 112222 25888899999976666677889987
No 98
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.42 E-value=4.7 Score=45.68 Aligned_cols=52 Identities=29% Similarity=0.826 Sum_probs=43.6
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
...|.||++.. +.+--.|++| -|+|-+|-+|-- -.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 36899999985 5556679999 999999999984 4478999999999999764
No 99
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=62.76 E-value=1.3 Score=42.97 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=34.9
Q ss_pred cCCccccccCcccccCC-CCCceeecCCCCCCcchhhHHHHHhhcCCCCCCC
Q 002480 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (917)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~-~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqC 84 (917)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999988764 35 89999999999999988444554455544
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=5 Score=45.10 Aligned_cols=45 Identities=33% Similarity=0.896 Sum_probs=37.3
Q ss_pred CCCCCceeecCCCCCCc--------ch--hhHHHHHhhcCCCCCCCccccccccC
Q 002480 49 TDNGEPFVACNECAFPV--------CR--PCYEYERREGNQACPQCKTRYKRIKG 93 (917)
Q Consensus 49 ~~~Ge~FvaC~eC~FPV--------CR--pCYeyErkeG~q~CPqCktrYkr~kG 93 (917)
..+|+..--|.-|+||| |+ .|||-.|.|-.+.||.|-.|-.|..-
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 34566677799999998 54 69999999999999999999988743
No 101
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=59.08 E-value=5.3 Score=33.70 Aligned_cols=28 Identities=25% Similarity=0.822 Sum_probs=18.3
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHH
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYE 71 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYe 71 (917)
.|.|||+++|+... +.= +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~----~k~-~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR----FKI-KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc----eec-cCcc-chHHHHH
Confidence 59999999999652 111 1123 7788874
No 102
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=58.26 E-value=13 Score=39.58 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=38.9
Q ss_pred CCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhh-cCCCCCccEEEE
Q 002480 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYV 605 (917)
Q Consensus 549 h~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff-~Dp~~g~kva~V 605 (917)
..-|-+.|++++ .+.++|++.+.=|..+.+.++|.+++-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 456789999999 58999999999999999999999999999 898 56655
No 103
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=57.62 E-value=3.7 Score=46.18 Aligned_cols=36 Identities=33% Similarity=0.891 Sum_probs=27.6
Q ss_pred cccccCcccccCCCCCceeecCCC-CCCcchhhHHHHHhhc
Q 002480 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC-~FPVCRpCYeyErkeG 77 (917)
-|.+|--++ +.-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 688887654 34589999999 9999999995444444
No 104
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=56.54 E-value=8.9 Score=29.72 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=30.4
Q ss_pred ccccCcccccCCCCCceeecCCCCCCcchhhHHHHHh-hcCCCCCCC
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQC 84 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErk-eG~q~CPqC 84 (917)
|.||.+...... --.+|+=..|+.|..--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778888744322 3347899999999987766 788899988
No 105
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=55.97 E-value=11 Score=30.75 Aligned_cols=45 Identities=22% Similarity=0.576 Sum_probs=32.2
Q ss_pred cccccCcccccCCCCCceeecCCCCCC-cchhhHHHHHhhcCCCCCCCcccccc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FP-VCRpCYeyErkeG~q~CPqCktrYkr 90 (917)
.|.||.+..-. -.|. .|+=- +|..|++--++ ....||-|+++.++
T Consensus 4 ~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 69999997321 1344 56788 99999976666 77999999998754
No 107
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=55.96 E-value=9.2 Score=43.17 Aligned_cols=63 Identities=30% Similarity=0.752 Sum_probs=45.1
Q ss_pred ccccCCccccc--cCcccccCCCCCceeecCC-CCCCcchhhHH-----------------------HH-----------
Q 002480 31 VKELSGQICQI--CGDEIEITDNGEPFVACNE-CAFPVCRPCYE-----------------------YE----------- 73 (917)
Q Consensus 31 ~~~~~~~~Cqi--Cgd~Vg~~~~Ge~FvaC~e-C~FPVCRpCYe-----------------------yE----------- 73 (917)
+.+..|-.|.- ||..+-...| .--|.|.. |+|-.||.|.| .|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 44567888986 9987655542 23588877 99999999998 22
Q ss_pred ----HhhcCCCCCCCccccccccCC
Q 002480 74 ----RREGNQACPQCKTRYKRIKGS 94 (917)
Q Consensus 74 ----rkeG~q~CPqCktrYkr~kGs 94 (917)
.|-.++-||.|.++-.|--|+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGC 413 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGC 413 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCce
Confidence 233567788888888776655
No 108
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=55.38 E-value=11 Score=29.20 Aligned_cols=39 Identities=38% Similarity=0.920 Sum_probs=27.8
Q ss_pred ccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCC
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqC 84 (917)
|.||-|...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788765322 54444 89999999999776666 7999987
No 109
>PRK00420 hypothetical protein; Validated
Probab=55.25 E-value=5 Score=39.16 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=22.2
Q ss_pred eecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 002480 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 56 vaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr 90 (917)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 35888888763 338888999999998853
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=53.64 E-value=9.3 Score=33.19 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=25.4
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchh
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRP 68 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRp 68 (917)
.+|+|..||..+..+..+..|+ |..|+|-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 5889999999988866666555 87898876554
No 111
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=52.35 E-value=11 Score=44.39 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=22.4
Q ss_pred CceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 53 EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 53 e~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
+.-++|++|+.-+ ..+...||+|++.-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999864 23445899999998655
No 112
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=52.25 E-value=12 Score=30.24 Aligned_cols=37 Identities=27% Similarity=0.836 Sum_probs=28.2
Q ss_pred CccccccCcccccCCCCCceeecCCC-CCCcchhhHHHHHhhc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC-~FPVCRpCYeyErkeG 77 (917)
...|.+|+..| .|.-| -|.+| .|-+|..||..-+..+
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 45799999843 36666 79999 9999999997554443
No 113
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=50.97 E-value=51 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 002480 383 LITANTVLSILAVDYPVDKVACYVSDDGAAMLT 415 (917)
Q Consensus 383 ~v~~nTvls~la~dYP~~kl~~yVsDDG~s~lt 415 (917)
.++...|..-+++.+- ++||.|||+++-|
T Consensus 5 ~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t 33 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVD----HIYIYDDGSTDGT 33 (97)
T ss_pred HHHHHHHHHHHHcCCC----EEEEEECCCCccH
Confidence 4566666666776553 4899999998744
No 114
>PRK12495 hypothetical protein; Provisional
Probab=50.71 E-value=8 Score=41.75 Aligned_cols=29 Identities=31% Similarity=0.875 Sum_probs=21.1
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 002480 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 55 FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr 90 (917)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 344666666664 45899999999999864
No 115
>PHA02926 zinc finger-like protein; Provisional
Probab=49.48 E-value=19 Score=39.18 Aligned_cols=61 Identities=26% Similarity=0.580 Sum_probs=43.1
Q ss_pred cCCccccccCcccccC--CCCCceeecCCCCCCcchhhHHHHHhh-----cCCCCCCCccccccccCC
Q 002480 34 LSGQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKRIKGS 94 (917)
Q Consensus 34 ~~~~~CqiCgd~Vg~~--~~Ge~FvaC~eC~FPVCRpCYeyErke-----G~q~CPqCktrYkr~kGs 94 (917)
.....|.||=+.|--. ++...|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 3457999999987543 222234444568899999999766653 246799999999876544
No 116
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.08 E-value=11 Score=44.16 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=21.5
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 54 ~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
.-++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 23346899999987544
No 117
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.00 E-value=12 Score=48.10 Aligned_cols=45 Identities=24% Similarity=0.629 Sum_probs=32.8
Q ss_pred cCCccccccCcccccCCCCCceeecCCCCCC-----cchhhHHHHHhhc-CCCCCCCccccc
Q 002480 34 LSGQICQICGDEIEITDNGEPFVACNECAFP-----VCRPCYEYERREG-NQACPQCKTRYK 89 (917)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FP-----VCRpCYeyErkeG-~q~CPqCktrYk 89 (917)
.....|.-||-.. ....|.+||=. .|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4566999999983 55789999853 67777 4433 367999998654
No 118
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=47.70 E-value=12 Score=30.36 Aligned_cols=28 Identities=32% Similarity=0.816 Sum_probs=18.1
Q ss_pred ccccccCcccccCCCCCceeecCCCCCCc
Q 002480 37 QICQICGDEIEITDNGEPFVACNECAFPV 65 (917)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPV 65 (917)
-.|+-||..+..+++.. -+-|..|+.++
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 36788888777766554 34666666554
No 119
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.52 E-value=75 Score=37.41 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=37.6
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCc
Q 002480 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAA 412 (917)
Q Consensus 362 ~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s 412 (917)
+.+||++.|+|.-.| |--.++.+||-|++.-.=|.=--.|.+.||=+.
T Consensus 151 pe~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfSd 198 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSD 198 (603)
T ss_pred cccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCCc
Confidence 478999999999999 999999999999987654432335667777443
No 120
>PRK07220 DNA topoisomerase I; Validated
Probab=45.37 E-value=11 Score=47.47 Aligned_cols=48 Identities=19% Similarity=0.653 Sum_probs=32.6
Q ss_pred ccccccCcccccC--CCCCceeecCCCCCCcchhhHHHHHh----hcCCCCCCCcc
Q 002480 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKT 86 (917)
Q Consensus 37 ~~CqiCgd~Vg~~--~~Ge~FvaC~eC~FPVCRpCYeyErk----eG~q~CPqCkt 86 (917)
..|..||.++... ..|..|+.|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999775442 3466799996 57888755543321 13578999985
No 121
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=43.48 E-value=15 Score=36.34 Aligned_cols=49 Identities=33% Similarity=0.807 Sum_probs=36.1
Q ss_pred cCCccccccCcccccC--CCCCceeecCCCCCCcchhhHHH---HHhhcCCCCCCCcc
Q 002480 34 LSGQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (917)
Q Consensus 34 ~~~~~CqiCgd~Vg~~--~~Ge~FvaC~eC~FPVCRpCYey---ErkeG~q~CPqCkt 86 (917)
..++.|..||....+- ..| -|+.|- .||.|+- |+- +..+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 4578999999995544 568 999994 6999996 221 12255689999997
No 122
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=43.41 E-value=19 Score=29.29 Aligned_cols=31 Identities=32% Similarity=0.765 Sum_probs=25.1
Q ss_pred cccccCcccccCCCCCceeecCCCC-CCcchhhHHHH
Q 002480 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYE 73 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~-FPVCRpCYeyE 73 (917)
.|.+|+..| . | ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCcC
Confidence 588999843 2 5 789999997 99999999643
No 123
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=4.2 Score=46.47 Aligned_cols=50 Identities=32% Similarity=0.666 Sum_probs=40.3
Q ss_pred ccCCc-cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 002480 33 ELSGQ-ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (917)
Q Consensus 33 ~~~~~-~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrY 88 (917)
...++ +|-||-+=+-.+-. =.||+--.|+.|.--.-++||..||-|++.-
T Consensus 39 ~~~~~v~c~icl~llk~tmt------tkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMT------TKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred HhhhhhccHHHHHHHHhhcc------cHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 33344 89999887665522 3489999999999999999999999999876
No 124
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=42.17 E-value=11 Score=44.19 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=34.5
Q ss_pred CccccccCcccccCCCCCceeecCCCC-CCcchhhHHHHHhhcCCCCCCCcccccccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~-FPVCRpCYeyErkeG~q~CPqCktrYkr~k 92 (917)
...|-.|..+| +|-.+|-|.||. |-+|-+|+.--..-|.+ ||.-+|+-.+
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~ 64 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMD 64 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeec
Confidence 34899999875 477899999998 99999999433222222 3445555443
No 125
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=41.79 E-value=22 Score=29.51 Aligned_cols=30 Identities=33% Similarity=1.017 Sum_probs=25.3
Q ss_pred cccccCcccccCCCCCceeecCCC-CCCcchhhHH
Q 002480 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC-~FPVCRpCYe 71 (917)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987643 5589999999 9999999996
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.44 E-value=11 Score=42.71 Aligned_cols=30 Identities=27% Similarity=0.869 Sum_probs=25.4
Q ss_pred CCCcchhhHHHHHhhcC--CCCCCCccccccc
Q 002480 62 AFPVCRPCYEYERREGN--QACPQCKTRYKRI 91 (917)
Q Consensus 62 ~FPVCRpCYeyErkeG~--q~CPqCktrYkr~ 91 (917)
+|.|||.|+-.-+-+-+ +-||-|.|+||.-
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999977776666 9999999999754
No 127
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.32 E-value=9.4 Score=29.17 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=12.6
Q ss_pred HHHHhhcCCCCCCCccccc
Q 002480 71 EYERREGNQACPQCKTRYK 89 (917)
Q Consensus 71 eyErkeG~q~CPqCktrYk 89 (917)
.|+-++....||.|+.+-.
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCcCCCcCcCCCCcHH
Confidence 3444446789999987654
No 128
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=40.25 E-value=17 Score=27.00 Aligned_cols=28 Identities=39% Similarity=1.017 Sum_probs=12.0
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhh
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpC 69 (917)
.|.+||..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 368889999999998877
No 129
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=39.38 E-value=9.9 Score=44.03 Aligned_cols=69 Identities=23% Similarity=0.507 Sum_probs=44.0
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcc-hhhHHHHHhhcCCCCCCCcccc---ccc--cCCCCCCCCCCCCCc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVC-RPCYEYERREGNQACPQCKTRY---KRI--KGSPRVDGDEEEDDT 106 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVC-RpCYeyErkeG~q~CPqCktrY---kr~--kGsprv~gd~ee~~~ 106 (917)
-+-.|..||+-+|+...----.+|-- -.= |==|||=-+.|.+.||-|+.-- ||. -|||-|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 35589999999999865444555521 111 1136777899999999998322 322 367787776544443
No 130
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=38.98 E-value=10 Score=39.66 Aligned_cols=26 Identities=27% Similarity=0.847 Sum_probs=19.9
Q ss_pred ccccCcccccCCCCCceeecCCCCCCc-chh
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPV-CRP 68 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPV-CRp 68 (917)
|+-|... .+.+.-..|+.|-||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 9999876 2344578899999999 654
No 131
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=38.76 E-value=69 Score=37.32 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=27.4
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHH
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM 590 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~am 590 (917)
.+.|+-.|=-.+-... +.+..||-.+|||.|+|- ++.|-+
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiPG--aV~EYv 181 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIPG--AVNEYV 181 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCCc--hHHHHH
Confidence 4678888774333222 468999999999999764 555533
No 132
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=38.65 E-value=32 Score=27.51 Aligned_cols=43 Identities=23% Similarity=0.729 Sum_probs=31.7
Q ss_pred ccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcc
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCkt 86 (917)
|.||-.+. +++..+ +.= .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~-~l~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRP-RLT-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCe-EEc-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999887 333333 332 689999999996554 67789999985
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.60 E-value=34 Score=29.76 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=35.0
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr 90 (917)
-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +.+||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999865543 356666689988 999997654 5799999876643
No 134
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=38.52 E-value=20 Score=31.40 Aligned_cols=31 Identities=26% Similarity=0.770 Sum_probs=24.8
Q ss_pred cCCccccccCcc---cccCCCCCceeecCCCCCC
Q 002480 34 LSGQICQICGDE---IEITDNGEPFVACNECAFP 64 (917)
Q Consensus 34 ~~~~~CqiCgd~---Vg~~~~Ge~FvaC~eC~FP 64 (917)
..|-+|.-|+.- +...+||...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 357789999854 5556899999999999984
No 135
>PRK11827 hypothetical protein; Provisional
Probab=38.35 E-value=21 Score=31.37 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=17.0
Q ss_pred CcchhhHHHHHhhcCCCCCCCccccccccCCC
Q 002480 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (917)
Q Consensus 64 PVCRpCYeyErkeG~q~CPqCktrYkr~kGsp 95 (917)
|+|+-=.+|...+..-+|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44443334433333356777888886554444
No 136
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=38.25 E-value=17 Score=44.36 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=25.6
Q ss_pred ccCCccccccCcccccCCCCCc-----------eee-----cCCCCCCcchhhHHHH
Q 002480 33 ELSGQICQICGDEIEITDNGEP-----------FVA-----CNECAFPVCRPCYEYE 73 (917)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~-----------Fva-----C~eC~FPVCRpCYeyE 73 (917)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 3455689999999544444322 222 0123789999999654
No 137
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=38.23 E-value=10 Score=36.68 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=18.2
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 002480 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (917)
Q Consensus 55 FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrY 88 (917)
-+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 35577776 5566655556799999753
No 138
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=38.16 E-value=24 Score=28.60 Aligned_cols=45 Identities=24% Similarity=0.792 Sum_probs=31.8
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhhHHHHHh-----hcCCCCCCCcc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-----EGNQACPQCKT 86 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErk-----eG~q~CPqCkt 86 (917)
+|+|||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5999999 567788999999987666667655422 33566776653
No 139
>PRK04296 thymidine kinase; Provisional
Probab=37.70 E-value=16 Score=37.89 Aligned_cols=35 Identities=34% Similarity=0.657 Sum_probs=24.1
Q ss_pred ccccccCcccccC----------CCCCc-eeecCCCCCCcchhhHH
Q 002480 37 QICQICGDEIEIT----------DNGEP-FVACNECAFPVCRPCYE 71 (917)
Q Consensus 37 ~~CqiCgd~Vg~~----------~~Ge~-FvaC~eC~FPVCRpCYe 71 (917)
.+|..||.+--.| .+|+. -+--.|=-.||||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 4899999873332 24444 35555667899999994
No 140
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=37.16 E-value=90 Score=36.25 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=27.0
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHH
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREA 589 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~a 589 (917)
.+.|+-.|=-.+-... +.+..||-.+|||.|+|- ++.|-
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiPG--aV~EY 179 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFPG--AVNEY 179 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCCc--hHHHH
Confidence 4678887774333222 468999999999999764 45553
No 141
>PRK14973 DNA topoisomerase I; Provisional
Probab=35.48 E-value=23 Score=45.68 Aligned_cols=48 Identities=23% Similarity=0.695 Sum_probs=31.7
Q ss_pred ccccccCcccccC--CCCCceeecCCCCCCcchhhHHHHHh-hc-----CCCCCCCccc
Q 002480 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR-EG-----NQACPQCKTR 87 (917)
Q Consensus 37 ~~CqiCgd~Vg~~--~~Ge~FvaC~eC~FPVCRpCYeyErk-eG-----~q~CPqCktr 87 (917)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999876432 3444 99996 66888855544322 12 3689999973
No 142
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=35.42 E-value=20 Score=30.37 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=20.6
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPV 65 (917)
.-.|..||.+|.++.. ..-+.|..|+|.|
T Consensus 6 ~Y~C~~Cg~~~~~~~~-~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQE-TRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhhc-cCceeCCCCCcEE
Confidence 4579999999964432 2348898898865
No 143
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.40 E-value=29 Score=40.72 Aligned_cols=53 Identities=25% Similarity=0.622 Sum_probs=37.0
Q ss_pred ccccccCC-ccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 29 TSVKELSG-QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 29 ~~~~~~~~-~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
+.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555544 48999998642 2333 368999999999754433 457999999874
No 144
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=34.49 E-value=7.6 Score=37.54 Aligned_cols=30 Identities=30% Similarity=0.716 Sum_probs=15.9
Q ss_pred eeecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 55 FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
-+-|+.|+. +|+..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 345666664 233334444599999986544
No 145
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=33.99 E-value=44 Score=37.77 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=29.1
Q ss_pred cCCCCEEEEecCCCCCCcHHHHHHHHHhhcCCCCCccEEEE
Q 002480 565 ISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (917)
Q Consensus 565 ltngp~Il~lDcDhyip~~~~Lr~amcff~Dp~~g~kva~V 605 (917)
.+..+||+++|.|++ |.+++-+..+.+..--....+.+||
T Consensus 125 ~a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 125 GARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred hcCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 467899999999996 8888777777666432234477777
No 146
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.98 E-value=13 Score=32.42 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=6.6
Q ss_pred CCCCCCcccccc
Q 002480 79 QACPQCKTRYKR 90 (917)
Q Consensus 79 q~CPqCktrYkr 90 (917)
-+||+||.-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 345666666643
No 147
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.71 E-value=55 Score=40.23 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=42.0
Q ss_pred CCCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 002480 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (917)
Q Consensus 362 ~~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ 413 (917)
...||++-|+|+-+| |...+...||-|++..-=|.---.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 356999999999999 9999999999999888755556679999998875
No 148
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=33.35 E-value=14 Score=38.41 Aligned_cols=34 Identities=38% Similarity=0.959 Sum_probs=21.6
Q ss_pred ccccccCccccc----CCCCC-ceeecCCCCCCcchhhH
Q 002480 37 QICQICGDEIEI----TDNGE-PFVACNECAFPVCRPCY 70 (917)
Q Consensus 37 ~~CqiCgd~Vg~----~~~Ge-~FvaC~eC~FPVCRpCY 70 (917)
.+|..||.+--. ..+|+ ..|--+|--.||||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988332 24444 35555788899999998
No 149
>PRK07219 DNA topoisomerase I; Validated
Probab=33.31 E-value=23 Score=45.04 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=31.5
Q ss_pred CccccccCcccccC--CCCCceeecCCCCCCcchhhHHHHH----hhcCCCCCCCccccccc
Q 002480 36 GQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYKRI 91 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~--~~Ge~FvaC~eC~FPVCRpCYeyEr----keG~q~CPqCktrYkr~ 91 (917)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34688887664432 3455 88885 6777753332211 12347899998866543
No 150
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.20 E-value=15 Score=35.82 Aligned_cols=30 Identities=17% Similarity=0.571 Sum_probs=16.8
Q ss_pred eeecCCCCCCcchhhHHHHHhhcC-CCCCCCccccccc
Q 002480 55 FVACNECAFPVCRPCYEYERREGN-QACPQCKTRYKRI 91 (917)
Q Consensus 55 FvaC~eC~FPVCRpCYeyErkeG~-q~CPqCktrYkr~ 91 (917)
-+-|+.|+ ++++..+-. ..||+|+.+-.+.
T Consensus 71 ~~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 71 ELECKDCS-------HVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEEhhhCC-------CccccCCccCCcCcCCCCCceEE
Confidence 34466665 334443322 3599999875443
No 151
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=32.70 E-value=25 Score=36.12 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.7
Q ss_pred ccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 45 EIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 45 ~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
-||+..+|-.=+-|.-|+|.-|..=.|-++..-+-.=|+|--+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478888898889999999999999999888888899999999994
No 152
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=32.01 E-value=25 Score=37.71 Aligned_cols=26 Identities=42% Similarity=0.945 Sum_probs=19.8
Q ss_pred CccccccCcccccC----CCCCceeecCCCCCCcchhhHH
Q 002480 36 GQICQICGDEIEIT----DNGEPFVACNECAFPVCRPCYE 71 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~----~~Ge~FvaC~eC~FPVCRpCYe 71 (917)
.-+|..||+-+.-. .||+ |||++||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 36999999986543 3666 78999996
No 153
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=31.46 E-value=5e+02 Score=29.24 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=37.1
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-chhhHHHHHh
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVAC-YVSDDGA-AMLTFEALSE 421 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~-yVsDDG~-s~ltf~al~E 421 (917)
.+-++|=|+.|-.| +++ ....=.-.++.++||++.+++ .+..|.. -..|.+.|.+
T Consensus 22 ~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~ 78 (269)
T PF03452_consen 22 RNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEA 78 (269)
T ss_pred ccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHH
Confidence 45678888888877 344 466777778889999998887 3333333 2445555554
No 154
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=31.31 E-value=14 Score=31.27 Aligned_cols=7 Identities=43% Similarity=1.365 Sum_probs=3.5
Q ss_pred CCCCCcc
Q 002480 80 ACPQCKT 86 (917)
Q Consensus 80 ~CPqCkt 86 (917)
.||+|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4555544
No 155
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=31.30 E-value=29 Score=30.24 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=14.0
Q ss_pred hhcCCCCCCCccccc------cccCCCCCCCCCCCCCcc
Q 002480 75 REGNQACPQCKTRYK------RIKGSPRVDGDEEEDDTD 107 (917)
Q Consensus 75 keG~q~CPqCktrYk------r~kGsprv~gd~ee~~~d 107 (917)
.+.|..-|=|-+|=| -..|+=||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 455555666666654 456777888886544433
No 156
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=30.75 E-value=20 Score=27.34 Aligned_cols=24 Identities=42% Similarity=1.068 Sum_probs=12.3
Q ss_pred cccccCcccccCCCCCceeecCCCCC
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAF 63 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~F 63 (917)
.|..|+.+-.+ +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 58888888666 7788776 888875
No 157
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.71 E-value=32 Score=36.88 Aligned_cols=39 Identities=23% Similarity=0.675 Sum_probs=25.8
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktr 87 (917)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998874321 23788887654332 3589999865
No 158
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=30.11 E-value=34 Score=40.07 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=23.2
Q ss_pred ceeecCCCCCCcchhhHHHHHhhc-CCCCCCCcccccccc
Q 002480 54 PFVACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (917)
Q Consensus 54 ~FvaC~eC~FPVCRpCYeyErkeG-~q~CPqCktrYkr~k 92 (917)
..++|+||+.-+=+| ..+.| .-.||+|++.--|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 368899998765333 12223 356999999986653
No 159
>PTZ00293 thymidine kinase; Provisional
Probab=30.10 E-value=24 Score=37.99 Aligned_cols=35 Identities=20% Similarity=0.697 Sum_probs=22.6
Q ss_pred ccccccCccccc----CCCCCc-eeecCCCCCCcchhhHH
Q 002480 37 QICQICGDEIEI----TDNGEP-FVACNECAFPVCRPCYE 71 (917)
Q Consensus 37 ~~CqiCgd~Vg~----~~~Ge~-FvaC~eC~FPVCRpCYe 71 (917)
.+|..||.+--. .++|+. -+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988433 234443 23333445789999995
No 160
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.92 E-value=20 Score=34.85 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=17.2
Q ss_pred eecCCCCCCcchhhHHHHHhhcCCCCCCCccccccc
Q 002480 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (917)
Q Consensus 56 vaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr~ 91 (917)
.-|+.|+ ++++..+-.-.||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4465555 3344444456799999765443
No 161
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.44 E-value=29 Score=27.38 Aligned_cols=23 Identities=30% Similarity=0.881 Sum_probs=17.9
Q ss_pred ccccCcccccCCCCCceeecCCCCC
Q 002480 39 CQICGDEIEITDNGEPFVACNECAF 63 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~F 63 (917)
|.+||.......||- .-|.+|+-
T Consensus 11 C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 11 CPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred CCCCCCeEeEccCCE--EEhhhCce
Confidence 999999988888886 44777764
No 162
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=29.41 E-value=39 Score=27.99 Aligned_cols=35 Identities=20% Similarity=0.515 Sum_probs=26.4
Q ss_pred cccccCcccccCCCCCceeecCCCC-CCcchhhHHHHHhhc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREG 77 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~-FPVCRpCYeyErkeG 77 (917)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|--+
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~ 37 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPS 37 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCC
Confidence 6999999974 2667777776 999999996554433
No 163
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=29.34 E-value=18 Score=35.07 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=16.7
Q ss_pred eecCCCCCCcchhhHHHHHhhcC-CCCCCCcccccc
Q 002480 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKR 90 (917)
Q Consensus 56 vaC~eC~FPVCRpCYeyErkeG~-q~CPqCktrYkr 90 (917)
.-|+.|+ ++++..+-. -.||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 99 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLR 99 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcE
Confidence 4576666 244444443 569999976433
No 164
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.24 E-value=21 Score=30.80 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.4
Q ss_pred hhcCCCCCCCcccccc
Q 002480 75 REGNQACPQCKTRYKR 90 (917)
Q Consensus 75 keG~q~CPqCktrYkr 90 (917)
++.--+||.|+++|-|
T Consensus 18 ~dDiVvCp~CgapyHR 33 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHR 33 (54)
T ss_pred CCCEEECCCCCCcccH
Confidence 4556799999999976
No 165
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=29.14 E-value=46 Score=36.10 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=52.5
Q ss_pred cCCcHHHHHHHhHhhCCCCCCCChhhHHHHHHHhhcccccccCccccccCeecccccchHHHHHHHHhCCcEEEEEcCCC
Q 002480 734 FGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKR 813 (917)
Q Consensus 734 fG~s~~f~~S~l~e~GG~p~~~~~~~~l~eai~v~sc~ye~~t~wG~evGW~y~SVTED~~tg~rLh~~GWrsvY~~p~~ 813 (917)
||....+.++.+.+++|++. .-| || | .||-+++.||...|.+........
T Consensus 112 ~Gg~~~~~k~~f~~VNGf~n----------------------~f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~~~ 161 (219)
T cd00899 112 FGGVLALTREQFRKVNGFSN----------------------AYW----GW--G--GEDDDLYNRIKAAGLKITRPSGDT 161 (219)
T ss_pred cccceeeEHHHHHHhCCcCC----------------------cCc----cC--C--cchHHHHHHHHHCCCeEEeccCcc
Confidence 67777888888899999876 223 44 3 499999999999999877663211
Q ss_pred C----cc------cccCCCCHHHHHHHhHhhhchhHHHH
Q 002480 814 P----AF------KGSAPINLSDRLHQVLRWALGSVEIL 842 (917)
Q Consensus 814 ~----Af------~G~aPetl~a~lkQR~RWA~G~lQil 842 (917)
. .. ....|.-+.....++.||+..++..+
T Consensus 162 ~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 162 GRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred cceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 1 00 11233345555667788887777554
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.01 E-value=40 Score=42.08 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=6.3
Q ss_pred CCCCCCCcccc
Q 002480 78 NQACPQCKTRY 88 (917)
Q Consensus 78 ~q~CPqCktrY 88 (917)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45666666543
No 167
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=35 Score=38.16 Aligned_cols=22 Identities=32% Similarity=0.986 Sum_probs=17.3
Q ss_pred ccCCccccccCcccccCCCCCceeecCCCC
Q 002480 33 ELSGQICQICGDEIEITDNGEPFVACNECA 62 (917)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~ 62 (917)
..++..|.-||+- -|++|-.|.
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5567899999954 789998884
No 168
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.20 E-value=24 Score=31.20 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=14.6
Q ss_pred HhhcCCCCCCCcccccc
Q 002480 74 RREGNQACPQCKTRYKR 90 (917)
Q Consensus 74 rkeG~q~CPqCktrYkr 90 (917)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 47888999999999973
No 169
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=27.15 E-value=36 Score=35.49 Aligned_cols=37 Identities=24% Similarity=0.622 Sum_probs=22.0
Q ss_pred ccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCC
Q 002480 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQ 79 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q 79 (917)
|.|||-.|--. .-|.-.-=-.-||+.||.|.++...+
T Consensus 6 CEiCG~~i~~~----~~v~vegsel~VC~~Cak~G~~~~~~ 42 (165)
T COG1813 6 CELCGREIDKP----IKVKVEGAELTVCDDCAKFGTAAKTA 42 (165)
T ss_pred eeccccccCCC----eeEEeecceeehhHHHHHhccCcccc
Confidence 99999886511 01111122356889999888554433
No 170
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=82 Score=37.21 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCCceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 002480 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAML 414 (917)
Q Consensus 363 ~~lP~VDVfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~l 414 (917)
.+||+-.|+|+-.| |--....+||.|+|.-.=+.=-..|++.||++.+.
T Consensus 121 ~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dp 169 (559)
T KOG3738|consen 121 VDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDP 169 (559)
T ss_pred cCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCCh
Confidence 57999999999999 99999999999999987444356799999999874
No 171
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=26.63 E-value=45 Score=28.73 Aligned_cols=13 Identities=46% Similarity=0.992 Sum_probs=10.5
Q ss_pred cccccCcccccCC
Q 002480 38 ICQICGDEIEITD 50 (917)
Q Consensus 38 ~CqiCgd~Vg~~~ 50 (917)
.|..||.+|.+..
T Consensus 4 ~CP~CG~~iev~~ 16 (54)
T TIGR01206 4 ECPDCGAEIELEN 16 (54)
T ss_pred CCCCCCCEEecCC
Confidence 7899999987753
No 172
>PF04641 Rtf2: Rtf2 RING-finger
Probab=26.52 E-value=54 Score=36.05 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=38.3
Q ss_pred CCccccccCcccccCCCCC-ceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 002480 35 SGQICQICGDEIEITDNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge-~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr 90 (917)
..-+|.|++... +|. -||+=--||=-+|..|.+-- + ....||.|.++|.+
T Consensus 112 ~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 344999998876 454 58888889988888888544 4 45679999999963
No 173
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=26.43 E-value=77 Score=27.90 Aligned_cols=50 Identities=26% Similarity=0.565 Sum_probs=35.9
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcC-CCCCCCcc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKT 86 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~-q~CPqCkt 86 (917)
...+|..||-.|--.+.+ +-.+|.+|+=-+-+=|+ .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 345899999998665555 44579999977444466 5677776 57999973
No 174
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=51 Score=41.27 Aligned_cols=60 Identities=33% Similarity=0.817 Sum_probs=41.6
Q ss_pred cCCccccccCcccccCCCCC---ceeecCCCC--------------------CCcchhhHH-HH----Hh--hcCCCCCC
Q 002480 34 LSGQICQICGDEIEITDNGE---PFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (917)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge---~FvaC~eC~--------------------FPVCRpCYe-yE----rk--eG~q~CPq 83 (917)
....+|.-|=.++---.+=. +|..|..|| ||.|-.|-+ |+ || --.-+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 34558999998875443332 699999994 999999974 33 33 22369999
Q ss_pred Ccccc--ccccC
Q 002480 84 CKTRY--KRIKG 93 (917)
Q Consensus 84 CktrY--kr~kG 93 (917)
|+-.| ++++|
T Consensus 179 CGP~~~l~~~~g 190 (750)
T COG0068 179 CGPHLFLVNHDG 190 (750)
T ss_pred cCCCeEEEcCCC
Confidence 99754 45543
No 175
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=34 Score=35.51 Aligned_cols=43 Identities=26% Similarity=0.672 Sum_probs=35.6
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCk 85 (917)
.--.|.||=+..--. ....|+--.|+.|-+.-.. +.-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 345899998885443 5667899999999988877 889999999
No 176
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=26.21 E-value=40 Score=41.20 Aligned_cols=41 Identities=29% Similarity=0.675 Sum_probs=24.6
Q ss_pred CccccccCcccccCCCC----------Cceee--cCCCCCCcchhhHHHHHhhc
Q 002480 36 GQICQICGDEIEITDNG----------EPFVA--CNECAFPVCRPCYEYERREG 77 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~G----------e~Fva--C~eC~FPVCRpCYeyErkeG 77 (917)
+.+|.|||.+--++.+- .-|++ =.-=.||||+.||.+- ..|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~l-~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKDV-IYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHHH-HHH
Confidence 57999999974323221 11333 1122799999999543 455
No 177
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=26.08 E-value=39 Score=43.36 Aligned_cols=56 Identities=25% Similarity=0.504 Sum_probs=32.2
Q ss_pred CCccccccCcc--cccC-CCCCceeecCCCCCCcchhhHHHHH-----------hhcCCCCCCCccccccccC
Q 002480 35 SGQICQICGDE--IEIT-DNGEPFVACNECAFPVCRPCYEYER-----------REGNQACPQCKTRYKRIKG 93 (917)
Q Consensus 35 ~~~~CqiCgd~--Vg~~-~~Ge~FvaC~eC~FPVCRpCYeyEr-----------keG~q~CPqCktrYkr~kG 93 (917)
....|..||.. +... -.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 45689999864 2212 345 699994 5777742111111 1124689999876654443
No 178
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.68 E-value=31 Score=41.41 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=30.7
Q ss_pred cCCCCC-ceeecCCCCCC-cchhhH---HHHHhhcCCCCCCCccccccccCCCCC
Q 002480 48 ITDNGE-PFVACNECAFP-VCRPCY---EYERREGNQACPQCKTRYKRIKGSPRV 97 (917)
Q Consensus 48 ~~~~Ge-~FvaC~eC~FP-VCRpCY---eyErkeG~q~CPqCktrYkr~kGsprv 97 (917)
++-.|- .++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 344555 47788888765 366663 344455556677777777666666654
No 179
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=25.52 E-value=1.7e+02 Score=36.91 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCCchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHH
Q 002480 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALRE 588 (917)
Q Consensus 548 hh~KAGALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~ 588 (917)
...|+-.|=-.+-... +.+..||-.+|||.|+|- ++.|
T Consensus 146 r~gk~egm~~g~~la~-~~g~~yvgfidadny~pg--~v~e 183 (694)
T PRK14502 146 RSGKAEGMILGIILTM-FSGRDYVGFIDTDNYIPG--AVWE 183 (694)
T ss_pred ecCcchHHHHHHHHHH-hcCCceEeEeeccCCCCc--hHHH
Confidence 4678888775433222 688999999999999764 4554
No 180
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=25.19 E-value=45 Score=30.18 Aligned_cols=31 Identities=32% Similarity=0.881 Sum_probs=24.2
Q ss_pred cCCccccccCc--ccc-cCCCCCceeecCCCCCC
Q 002480 34 LSGQICQICGD--EIE-ITDNGEPFVACNECAFP 64 (917)
Q Consensus 34 ~~~~~CqiCgd--~Vg-~~~~Ge~FvaC~eC~FP 64 (917)
..|-+|.-|+. .|. ..+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 35779999984 444 45789999999999984
No 181
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=25.08 E-value=19 Score=26.11 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=9.6
Q ss_pred HhhcCCCCCCCccc
Q 002480 74 RREGNQACPQCKTR 87 (917)
Q Consensus 74 rkeG~q~CPqCktr 87 (917)
..++...||.|+++
T Consensus 12 ~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 12 IDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccccChhhCCC
Confidence 36667777777765
No 182
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.93 E-value=92 Score=25.93 Aligned_cols=45 Identities=36% Similarity=0.710 Sum_probs=28.5
Q ss_pred cccccCcccccCCCCCceeecCCCCC---CcchhhHHHHHh-hcCCCCCCCc
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYERR-EGNQACPQCK 85 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~F---PVCRpCYeyErk-eG~q~CPqCk 85 (917)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 344444556777 4542 244567765544 4467899996
No 183
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.92 E-value=30 Score=27.12 Aligned_cols=11 Identities=45% Similarity=1.404 Sum_probs=9.5
Q ss_pred CCCCCcccccc
Q 002480 80 ACPQCKTRYKR 90 (917)
Q Consensus 80 ~CPqCktrYkr 90 (917)
.||.|+|.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999963
No 184
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=24.91 E-value=57 Score=23.85 Aligned_cols=24 Identities=38% Similarity=1.049 Sum_probs=13.1
Q ss_pred ccccCcccccCCCCCceeecCCCCC
Q 002480 39 CQICGDEIEITDNGEPFVACNECAF 63 (917)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvaC~eC~F 63 (917)
|..||-.|--.+.|-.| .|..|||
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55566665443444444 3777765
No 185
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=24.80 E-value=1.1e+02 Score=41.08 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=46.8
Q ss_pred cccchHHHHHHHHhCCcEEEEEcCCCCcccccCCC-CHHHHHHHhHhhhchhHHHHHhhccccccccCCCCChhHHHHhh
Q 002480 788 SVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPI-NLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKPLERFSYI 866 (917)
Q Consensus 788 SVTED~~tg~rLh~~GWrsvY~~p~~~Af~G~aPe-tl~a~lkQR~RWA~G~lQillsr~~PL~~g~~~~Lt~~QRL~Yl 866 (917)
.+.||+..||....||-++.++ +-.. .|..-+ -+..-..=-..-+.|+=+..+||. .+..+.++.+-.-|.+.
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~-EYiQ--vGKGRDvGlnqI~~FeaKia~G~GEQ~LSRd---~YrLG~~ldffRmLSfy 1246 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHH-EYIQ--VGKGRDVGLNQISNFEAKIANGNGEQTLSRD---YYRLGTQLDFFRMLSFY 1246 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccc-eeee--cccccccCcchhhhhhhhhcCCCcchhhhHH---HHHhcccccHHHHHHHH
Confidence 7899999999999999999988 3222 132221 111112222456889999888874 23335677777766643
No 186
>PRK08359 transcription factor; Validated
Probab=24.73 E-value=25 Score=36.91 Aligned_cols=34 Identities=38% Similarity=0.938 Sum_probs=19.4
Q ss_pred ccccccCcccccCCCCCce-eecCCCCCCcchhhH-HHHH
Q 002480 37 QICQICGDEIEITDNGEPF-VACNECAFPVCRPCY-EYER 74 (917)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~F-vaC~eC~FPVCRpCY-eyEr 74 (917)
-.|.|||.+|- |.++ |-=.-=-.-||..|| .|=.
T Consensus 7 ~~CEiCG~~i~----g~~~~v~ieGael~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIR----GPGHRIRIEGAELLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccC----CCCeEEEEcCeEEehHHHHHHHhCC
Confidence 35999999973 3311 111111245778888 6744
No 187
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=24.59 E-value=34 Score=30.07 Aligned_cols=28 Identities=32% Similarity=0.858 Sum_probs=20.8
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPV 65 (917)
--+|.-||.+-.+. .|++ +-|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D~-irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGDV-IRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCCc-EehhhcchHH
Confidence 45899999886664 3544 6799999976
No 188
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.43 E-value=19 Score=25.65 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=5.4
Q ss_pred hhcCCCCCCCcc
Q 002480 75 REGNQACPQCKT 86 (917)
Q Consensus 75 keG~q~CPqCkt 86 (917)
.++.+-||+|++
T Consensus 10 ~~~~~fC~~CG~ 21 (23)
T PF13240_consen 10 EDDAKFCPNCGT 21 (23)
T ss_pred CCcCcchhhhCC
Confidence 334444555544
No 189
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=24.30 E-value=50 Score=24.71 Aligned_cols=28 Identities=36% Similarity=0.954 Sum_probs=21.0
Q ss_pred cccccCcccccCCCCCceeecCCCCCCcchhh
Q 002480 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (917)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpC 69 (917)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998774 3433899999999876655
No 190
>PF12773 DZR: Double zinc ribbon
Probab=24.19 E-value=49 Score=26.91 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=7.7
Q ss_pred CccccccCcccc
Q 002480 36 GQICQICGDEIE 47 (917)
Q Consensus 36 ~~~CqiCgd~Vg 47 (917)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 456777776665
No 191
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.10 E-value=32 Score=32.87 Aligned_cols=44 Identities=36% Similarity=0.582 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccCCC-------CCCCCCCCCCCchhhhhhhcCCCC
Q 002480 470 KREYEEFKVRINGLVAMAQKVPEDGWTMQDG-------TPWPGNNVRDHPGMIQVFLGQNGV 524 (917)
Q Consensus 470 kreYee~kvri~~l~~~~~kvp~e~w~m~dg-------t~wpg~~~rdhp~~iqv~l~~~g~ 524 (917)
|.||+|+|..- -.+|.|+|- +.|.-.+--.||.+..-+--.+||
T Consensus 20 k~eyqel~~~~-----------~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKEKD-----------FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHHhh-----------hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 67999988521 258999875 345544456788888777666664
No 192
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.84 E-value=33 Score=26.89 Aligned_cols=10 Identities=40% Similarity=1.521 Sum_probs=9.0
Q ss_pred CCCCCccccc
Q 002480 80 ACPQCKTRYK 89 (917)
Q Consensus 80 ~CPqCktrYk 89 (917)
.||+|+++|.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5999999995
No 193
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.71 E-value=35 Score=28.26 Aligned_cols=38 Identities=21% Similarity=0.508 Sum_probs=30.1
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhh
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE 76 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErke 76 (917)
.+.|.+|+...++.... .-|.-|+--+|..|-.+....
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeeec
Confidence 46899999998884432 569999999999999877653
No 194
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=23.54 E-value=51 Score=25.76 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=23.0
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcchhhHHHH
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE 73 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyE 73 (917)
...|..|++.. +-.-|.+|..++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45788887542 45679999999999999653
No 195
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=23.34 E-value=37 Score=30.30 Aligned_cols=23 Identities=22% Similarity=0.616 Sum_probs=17.3
Q ss_pred ceeecCCCCCCcchhhHHHHHhhcCCCCCCCccc
Q 002480 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (917)
Q Consensus 54 ~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktr 87 (917)
.|.||.+|.+-+ + .+.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~-~~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------P-EKTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------C-CCcCCCCCCC
Confidence 467888888777 2 3599999874
No 196
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=23.19 E-value=51 Score=27.93 Aligned_cols=26 Identities=31% Similarity=0.855 Sum_probs=17.1
Q ss_pred cccccCcc-cccCC-CCC-----ceeecCCCCC
Q 002480 38 ICQICGDE-IEITD-NGE-----PFVACNECAF 63 (917)
Q Consensus 38 ~CqiCgd~-Vg~~~-~Ge-----~FvaC~eC~F 63 (917)
-|.-||.. |.... .+. .+|.|++|+.
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 58999855 33332 222 7899999876
No 197
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=76 Score=28.04 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=33.8
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcchhhHHHHHhhcC-CCCCCCc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCK 85 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~-q~CPqCk 85 (917)
..+|-.||-.|-..+.+-.| +|..||=-+-.-|- --||-|| -.||-|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 45899999998887777665 69999943333333 2367776 5799886
No 198
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=22.83 E-value=6.4e+02 Score=27.64 Aligned_cols=60 Identities=20% Similarity=0.421 Sum_probs=45.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHhHHHHhhhhHhHHHhhcC
Q 002480 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKI 438 (917)
Q Consensus 370 VfV~T~dP~kEpp~v~~nTvls~la~dYP~~kl~~yVsDDG~s~ltf~al~E~a~fA~~WvPfCkk~~i 438 (917)
|+|+|-+ ..|.|+-.|+.++++-.++.+.+.|.=-.||...+...-| .-.+++ ||+.|+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll--~g~~~~----l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL--DGGLQR----LCQDYYL 63 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH--HHHHHH----HHHhhcC
Confidence 7899998 7778999999999999998888888888888776544433 111333 8887764
No 199
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=22.36 E-value=1.7e+02 Score=28.80 Aligned_cols=53 Identities=19% Similarity=0.472 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHHHHHHhhheecccccC-----------ch-----hhHHHHHHHHHHHHHHHHHHhhc
Q 002480 285 ISPYRLIILLRLVILGLFFHYRILHPVN-----------DA-----YGLWLTSVICEIWFAVSWILDQF 337 (917)
Q Consensus 285 ~~~yR~~~v~~l~~l~~yl~wRi~~~~~-----------~a-----~~lwl~~~i~Ei~~a~~wiL~q~ 337 (917)
+.|||-..+...++++.|-+||+..+.. .. ..+|++.++.=+..++-|+...|
T Consensus 47 lepyRp~fi~~tl~~lg~a~~~~yr~~~~c~~g~~C~~~~~~~~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 47 LEPYRPYFIALTLLFLGYAFWRLYRPRKACEPGSACARPQSRRQTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578865554444444455555443211 11 35788888888888888876544
No 200
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=22.21 E-value=45 Score=33.99 Aligned_cols=45 Identities=29% Similarity=0.744 Sum_probs=32.9
Q ss_pred CccccccCcccccCCCCCceeecCCCCCCcch-hhHHHHHhhcCCCCCCCcccccccc
Q 002480 36 GQICQICGDEIEITDNGEPFVACNECAFPVCR-PCYEYERREGNQACPQCKTRYKRIK 92 (917)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCR-pCYeyErkeG~q~CPqCktrYkr~k 92 (917)
.++|-||-..+- ---|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 468888877532 2569999999996 899554 44799998876544
No 201
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=21.92 E-value=35 Score=33.79 Aligned_cols=52 Identities=25% Similarity=0.644 Sum_probs=33.1
Q ss_pred cCCccccccCcc--cccCCCC-CceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 34 LSGQICQICGDE--IEITDNG-EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 34 ~~~~~CqiCgd~--Vg~~~~G-e~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
..+..|.-||.. |....++ -.|..| +.||.||-=.- .+...+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 345688889943 3333333 379999 79999985432 2333345999997443
No 202
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=21.90 E-value=36 Score=32.52 Aligned_cols=40 Identities=25% Similarity=0.620 Sum_probs=25.2
Q ss_pred ccccCcccccC-CCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccc
Q 002480 39 CQICGDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (917)
Q Consensus 39 CqiCgd~Vg~~-~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrY 88 (917)
|.+||...+.. ..-+.|.=+ .+.+-|..|++ .||+|+..|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 88999654433 344445555 35555555554 699999887
No 203
>PRK13751 putative mercuric transport protein; Provisional
Probab=21.19 E-value=1.8e+02 Score=28.91 Aligned_cols=51 Identities=18% Similarity=0.458 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHHHHHhhheeccccc-----------Cc-----hhhHHHHHHHHHHHHHHHHHHh
Q 002480 285 ISPYRLIILLRLVILGLFFHYRILHPV-----------ND-----AYGLWLTSVICEIWFAVSWILD 335 (917)
Q Consensus 285 ~~~yR~~~v~~l~~l~~yl~wRi~~~~-----------~~-----a~~lwl~~~i~Ei~~a~~wiL~ 335 (917)
+.|||...+...++...|-+||+..+. +. -..+|++.++.-+.+++-+++.
T Consensus 47 lepyr~~fi~~a~~~l~~a~~~~yr~~~~C~~g~~Ca~p~~rk~~k~~~Wi~~vlvl~~L~fPy~~p 113 (116)
T PRK13751 47 LEPYRPIFIGAALVALFFAWRRIYRPAAACKPGEVCAIPQVRATYKLIFWIVAALVLVALGFPYVMP 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccCCCCccCCcccchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 568997665444444445556655321 11 1457887777777777776654
No 204
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.03 E-value=47 Score=43.96 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=29.8
Q ss_pred ccccccCcccccCCCCCceeecCCCCCCc-----chhhHHHH--HhhcCCCCCCCccccccc
Q 002480 37 QICQICGDEIEITDNGEPFVACNECAFPV-----CRPCYEYE--RREGNQACPQCKTRYKRI 91 (917)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPV-----CRpCYeyE--rkeG~q~CPqCktrYkr~ 91 (917)
..|.-||..+-- .-|.+|+-+. |..|=--- -..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888876421 2688888664 77775311 112355799999876543
No 205
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=20.87 E-value=50 Score=35.28 Aligned_cols=26 Identities=42% Similarity=1.002 Sum_probs=16.2
Q ss_pred cccccCcc-c---ccCC-CCCceeecCCCCC
Q 002480 38 ICQICGDE-I---EITD-NGEPFVACNECAF 63 (917)
Q Consensus 38 ~CqiCgd~-V---g~~~-~Ge~FvaC~eC~F 63 (917)
.|..||++ + -+.+ -+++.|-|+|||.
T Consensus 8 ~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~ 38 (201)
T COG1326 8 ECPSCGSEEVSHEVIKERGREPLVRCEECGT 38 (201)
T ss_pred ECCCCCcchhhHHHHHhcCCceEEEccCCCc
Confidence 68889833 3 1223 4457888888864
No 206
>PRK10220 hypothetical protein; Provisional
Probab=20.57 E-value=71 Score=31.31 Aligned_cols=25 Identities=32% Similarity=0.874 Sum_probs=15.2
Q ss_pred CcchhhHHHHHhhcCCCCCCCccccc
Q 002480 64 PVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 64 PVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
|-|..=|-||-.+ .-+||.|.-...
T Consensus 7 P~C~seytY~d~~-~~vCpeC~hEW~ 31 (111)
T PRK10220 7 PKCNSEYTYEDNG-MYICPECAHEWN 31 (111)
T ss_pred CCCCCcceEcCCC-eEECCcccCcCC
Confidence 4444446666333 378888886664
No 207
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=20.51 E-value=62 Score=31.66 Aligned_cols=25 Identities=28% Similarity=0.800 Sum_probs=14.5
Q ss_pred CcchhhHHHHHhhcCCCCCCCccccc
Q 002480 64 PVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 64 PVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
|-|..=|-||--+ .-+||-|.-..-
T Consensus 6 P~C~seytY~dg~-~~iCpeC~~EW~ 30 (109)
T TIGR00686 6 PKCNSEYTYHDGT-QLICPSCLYEWN 30 (109)
T ss_pred CcCCCcceEecCC-eeECcccccccc
Confidence 4444445566333 378888876663
No 208
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.46 E-value=42 Score=33.76 Aligned_cols=27 Identities=33% Similarity=0.838 Sum_probs=21.0
Q ss_pred eecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 56 vaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
-.|.+|+-|.=| |+|.-.||-|.++..
T Consensus 29 ~hCp~Cg~PLF~-------KdG~v~CPvC~~~~~ 55 (131)
T COG1645 29 KHCPKCGTPLFR-------KDGEVFCPVCGYREV 55 (131)
T ss_pred hhCcccCCccee-------eCCeEECCCCCceEE
Confidence 358888888733 899999999997554
No 209
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=20.31 E-value=86 Score=33.32 Aligned_cols=51 Identities=29% Similarity=0.748 Sum_probs=34.1
Q ss_pred ccCCccccccCcc-cccCCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCccccc
Q 002480 33 ELSGQICQICGDE-IEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (917)
Q Consensus 33 ~~~~~~CqiCgd~-Vg~~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYk 89 (917)
...|.+|++|.++ |-.-=+=+.-+-|.+|.---=+.|+. . +.||.|.-+=+
T Consensus 149 ~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~-~~CpkC~R~~~ 200 (202)
T PF13901_consen 149 QQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----K-KSCPKCARRQK 200 (202)
T ss_pred HhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----C-CCCCCcHhHhc
Confidence 4578999999864 33322334568898887666677775 2 66999975543
No 210
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.17 E-value=47 Score=39.21 Aligned_cols=32 Identities=31% Similarity=0.719 Sum_probs=22.3
Q ss_pred eecCCCCCCcchhhHHHHHhhc-CCCCCCCccccccc
Q 002480 56 VACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRI 91 (917)
Q Consensus 56 vaC~eC~FPVCRpCYeyErkeG-~q~CPqCktrYkr~ 91 (917)
++|++|+--+..|= .+.| ...||+|+++-.|+
T Consensus 11 ~~C~~Cd~l~~~~~----l~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPR----LEHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCC----CCCCCeeECCCCCCCCcCC
Confidence 78999988765431 1233 35699999998765
No 211
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.13 E-value=45 Score=33.91 Aligned_cols=43 Identities=35% Similarity=0.858 Sum_probs=25.7
Q ss_pred CCccccccCcccccCCCCCceeecCCCCCCcchhhHHHH-HhhcCCCCCCCcc
Q 002480 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKT 86 (917)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvaC~eC~FPVCRpCYeyE-rkeG~q~CPqCkt 86 (917)
.+..|..||+ .-||+|.+|.= -|+--.+.. ...+-.-||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4567999984 48999988841 122211110 1233478998875
No 212
>PRK05582 DNA topoisomerase I; Validated
Probab=20.08 E-value=60 Score=40.32 Aligned_cols=51 Identities=33% Similarity=0.722 Sum_probs=30.3
Q ss_pred CccccccCccccc--CCCCCceeecCCCCCCcchhhHHHHHhhcCCCCCCCcccccc
Q 002480 36 GQICQICGDEIEI--TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (917)
Q Consensus 36 ~~~CqiCgd~Vg~--~~~Ge~FvaC~eC~FPVCRpCYeyErkeG~q~CPqCktrYkr 90 (917)
...|..||..+-. ...| .|..|. +||-|+-.. ...++.++.||.|+.....
T Consensus 571 ~~~CP~Cg~~l~~~~~k~g-kf~~Cs--~~~~C~~~~-~~~~~~~~~CP~C~~~l~l 623 (650)
T PRK05582 571 GEDCPKCGSPMVIKMGRYG-KFIACS--NFPDCRNTK-PIVKEIGVKCPKCGGQIVE 623 (650)
T ss_pred CCCCCCCCCEeEEEecCCC-ceeecC--CccccccCC-CcccccCCCCCCCCCceEE
Confidence 3579999876432 2234 699996 344444221 1113456889999876543
No 213
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=41 Score=37.62 Aligned_cols=53 Identities=32% Similarity=0.716 Sum_probs=34.8
Q ss_pred ccccccCCccccccCcccccCCCCCc------eeecCCCCCCcchhhHHHHHh-----hcCCCCCCCcccc
Q 002480 29 TSVKELSGQICQICGDEIEITDNGEP------FVACNECAFPVCRPCYEYERR-----EGNQACPQCKTRY 88 (917)
Q Consensus 29 ~~~~~~~~~~CqiCgd~Vg~~~~Ge~------FvaC~eC~FPVCRpCYeyErk-----eG~q~CPqCktrY 88 (917)
-|.|+++..+|.+||..+-+++|-|- -.-||--- -|.-.| ---|-||=||+|-
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-------HEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-------HEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheeeecccch-------HHHhhhhheeecCCCCCchHHHHh
Confidence 47789999999999999777764332 22343211 122233 2359999999986
No 214
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=20.01 E-value=2.1e+02 Score=33.35 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=35.7
Q ss_pred hhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHHHHhhcC------------CC-------CCccEEEEecCcccc
Q 002480 554 AMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD------------PT-------SGKKICYVQFPQRFD 612 (917)
Q Consensus 554 ALNallrvSa~ltngp~Il~lDcDhyip~~~~Lr~amcff~D------------p~-------~g~kva~VQ~PQ~F~ 612 (917)
.+-++++. + +.++|++.|||+=.-+++.+++.+..+.+ +. ...++-.|||||-|.
T Consensus 86 SV~~gL~~---l-~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f~ 159 (378)
T PRK09382 86 SVRNALEA---L-DSEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLSR 159 (378)
T ss_pred HHHHHHHh---c-CCCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCCC
Confidence 34445552 2 34899999999744588888887765432 10 112566689999985
Done!