Query 002481
Match_columns 917
No_of_seqs 441 out of 2110
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 4E-134 8E-139 1182.1 59.5 792 33-909 3-834 (834)
2 PRK10199 alkaline phosphatase 100.0 1.6E-26 3.4E-31 256.0 29.4 260 86-367 30-345 (346)
3 PF04389 Peptidase_M28: Peptid 100.0 1.4E-28 2.9E-33 250.3 9.7 170 180-350 1-179 (179)
4 KOG2195 Transferrin receptor a 99.9 4.9E-22 1.1E-26 236.8 16.6 204 159-372 335-552 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.8 2.5E-18 5.5E-23 180.7 19.9 249 82-362 46-334 (338)
6 COG2234 Iap Predicted aminopep 99.7 1.8E-16 3.9E-21 183.3 12.8 188 161-359 183-389 (435)
7 TIGR03176 AllC allantoate amid 99.5 1.7E-13 3.6E-18 157.8 15.1 127 87-247 3-141 (406)
8 PRK12890 allantoate amidohydro 99.4 2.9E-12 6.3E-17 147.6 16.6 128 85-246 7-145 (414)
9 PRK12891 allantoate amidohydro 99.4 3.3E-12 7.2E-17 147.3 16.2 128 83-244 6-145 (414)
10 PRK13590 putative bifunctional 99.4 3.2E-12 7E-17 153.6 15.3 128 85-245 179-321 (591)
11 PRK09133 hypothetical protein; 99.4 5.8E-12 1.3E-16 147.6 17.1 150 82-261 32-203 (472)
12 PRK13799 unknown domain/N-carb 99.4 3.3E-12 7.2E-17 153.5 14.6 127 85-245 179-321 (591)
13 TIGR01879 hydantase amidase, h 99.4 5.9E-12 1.3E-16 144.6 15.8 127 87-247 1-139 (401)
14 PRK09290 allantoate amidohydro 99.4 8.6E-12 1.9E-16 143.7 16.6 130 84-247 4-145 (413)
15 PRK08262 hypothetical protein; 99.3 1.4E-11 3E-16 145.0 17.2 170 42-246 2-201 (486)
16 PRK12893 allantoate amidohydro 99.3 2.2E-11 4.9E-16 140.0 16.0 130 84-247 7-148 (412)
17 PRK06133 glutamate carboxypept 99.3 5.1E-11 1.1E-15 137.3 19.0 146 85-263 35-198 (410)
18 PRK12892 allantoate amidohydro 99.3 2.9E-11 6.3E-16 139.0 16.4 130 83-247 6-146 (412)
19 PRK08596 acetylornithine deace 99.3 5.9E-11 1.3E-15 137.2 18.2 144 87-262 13-178 (421)
20 PRK07473 carboxypeptidase; Pro 99.3 1.2E-10 2.6E-15 132.8 18.6 149 84-263 8-174 (376)
21 TIGR01910 DapE-ArgE acetylorni 99.3 6.9E-11 1.5E-15 134.3 15.9 146 91-263 2-168 (375)
22 PRK08588 succinyl-diaminopimel 99.2 9.9E-11 2.1E-15 133.0 16.2 140 86-261 1-161 (377)
23 PRK07906 hypothetical protein; 99.2 1.2E-10 2.6E-15 134.7 14.8 130 90-248 2-155 (426)
24 PRK07907 hypothetical protein; 99.2 3E-10 6.5E-15 132.4 17.6 145 85-263 16-185 (449)
25 PRK07338 hypothetical protein; 99.2 3.5E-10 7.6E-15 129.7 17.3 157 86-262 16-190 (402)
26 PRK13983 diaminopimelate amino 99.2 5.9E-10 1.3E-14 127.3 18.0 149 87-260 5-180 (400)
27 TIGR01893 aa-his-dipept aminoa 99.2 2.7E-10 5.9E-15 133.9 15.6 137 86-263 3-166 (477)
28 PRK09104 hypothetical protein; 99.2 4.4E-10 9.5E-15 131.6 17.2 146 85-261 15-190 (464)
29 TIGR01880 Ac-peptdase-euk N-ac 99.2 4.4E-10 9.6E-15 128.9 16.7 147 83-260 5-173 (400)
30 PRK06446 hypothetical protein; 99.2 4.5E-10 9.7E-15 130.6 16.5 138 87-258 2-161 (436)
31 PRK13013 succinyl-diaminopimel 99.2 8E-10 1.7E-14 127.7 18.2 153 86-262 13-188 (427)
32 PRK08201 hypothetical protein; 99.1 6.1E-10 1.3E-14 130.1 16.9 148 85-262 12-183 (456)
33 PRK04443 acetyl-lysine deacety 99.1 4.9E-10 1.1E-14 126.3 15.5 134 85-263 4-149 (348)
34 COG1363 FrvX Cellulase M and r 99.1 5E-09 1.1E-13 117.5 22.4 225 87-364 2-347 (355)
35 PF05450 Nicastrin: Nicastrin; 99.1 1.2E-09 2.7E-14 116.5 16.3 167 180-346 1-200 (234)
36 PRK05469 peptidase T; Provisio 99.1 9.7E-10 2.1E-14 126.5 16.6 126 87-244 2-184 (408)
37 TIGR01883 PepT-like peptidase 99.1 8.6E-10 1.9E-14 124.5 15.3 128 88-246 1-146 (361)
38 PRK13381 peptidase T; Provisio 99.1 1.1E-09 2.4E-14 125.8 16.2 126 88-246 2-184 (404)
39 PRK06837 acetylornithine deace 99.1 1.4E-09 3.1E-14 126.0 16.7 145 86-245 19-184 (427)
40 PRK06915 acetylornithine deace 99.1 1.7E-09 3.7E-14 124.9 17.3 156 86-260 16-192 (422)
41 PRK13007 succinyl-diaminopimel 99.1 1.4E-09 3.1E-14 122.3 16.2 134 86-262 6-156 (352)
42 PRK15026 aminoacyl-histidine d 99.1 2.2E-09 4.7E-14 126.5 18.3 138 84-262 7-171 (485)
43 PRK07079 hypothetical protein; 99.1 1.7E-09 3.7E-14 126.9 16.8 149 84-261 14-190 (469)
44 KOG2275 Aminoacylase ACY1 and 99.1 1.4E-09 3E-14 121.6 14.9 123 111-263 49-193 (420)
45 PRK00466 acetyl-lysine deacety 99.1 1.9E-09 4.1E-14 121.4 15.6 129 86-263 9-149 (346)
46 PRK07522 acetylornithine deace 99.1 1.9E-09 4.2E-14 122.6 15.5 141 87-261 4-165 (385)
47 TIGR01892 AcOrn-deacetyl acety 99.1 2E-09 4.4E-14 121.4 15.3 135 92-261 2-156 (364)
48 PRK07318 dipeptidase PepV; Rev 99.1 1.9E-09 4.1E-14 126.4 15.5 127 86-248 13-167 (466)
49 PRK08652 acetylornithine deace 99.1 1.9E-09 4.1E-14 120.8 14.8 130 87-261 2-143 (347)
50 TIGR01882 peptidase-T peptidas 99.0 2.2E-09 4.8E-14 123.8 15.6 127 87-245 3-187 (410)
51 PF09940 DUF2172: Domain of un 99.0 7.9E-09 1.7E-13 114.9 18.4 241 83-366 56-308 (386)
52 COG4882 Predicted aminopeptida 99.0 2.7E-09 5.8E-14 116.4 14.2 170 162-365 178-359 (486)
53 PRK07205 hypothetical protein; 99.0 2.9E-09 6.2E-14 124.1 15.4 127 85-247 9-164 (444)
54 PRK06156 hypothetical protein; 99.0 9.1E-09 2E-13 122.4 19.1 138 85-261 44-213 (520)
55 PRK13009 succinyl-diaminopimel 99.0 5.6E-09 1.2E-13 118.5 15.0 137 88-260 3-162 (375)
56 PRK05111 acetylornithine deace 99.0 8.3E-09 1.8E-13 117.5 16.5 140 86-260 4-168 (383)
57 PF01546 Peptidase_M20: Peptid 99.0 2.8E-09 6.1E-14 108.5 11.3 164 183-360 1-187 (189)
58 PRK08651 succinyl-diaminopimel 99.0 1E-08 2.2E-13 117.2 16.5 149 85-263 4-173 (394)
59 TIGR03106 trio_M42_hydro hydro 99.0 5E-08 1.1E-12 110.1 21.8 144 197-360 181-339 (343)
60 KOG2526 Predicted aminopeptida 98.9 2.5E-08 5.5E-13 111.0 18.0 196 161-361 192-415 (555)
61 COG0624 ArgE Acetylornithine d 98.9 1.1E-08 2.4E-13 117.8 15.8 144 87-261 13-180 (409)
62 TIGR03107 glu_aminopep glutamy 98.9 7.2E-08 1.6E-12 109.0 21.7 149 197-363 176-341 (350)
63 TIGR01886 dipeptidase dipeptid 98.9 8.1E-09 1.8E-13 121.2 14.6 126 87-248 13-166 (466)
64 PRK08554 peptidase; Reviewed 98.9 1.8E-08 3.9E-13 117.5 16.8 141 88-263 2-166 (438)
65 PRK13004 peptidase; Reviewed 98.9 1.9E-08 4E-13 115.6 16.3 136 86-261 14-171 (399)
66 TIGR01902 dapE-lys-deAc N-acet 98.9 1.2E-08 2.7E-13 114.2 14.0 125 92-263 2-138 (336)
67 TIGR01900 dapE-gram_pos succin 98.9 1.9E-08 4.1E-13 114.7 14.9 135 93-263 2-171 (373)
68 TIGR01246 dapE_proteo succinyl 98.9 2.1E-08 4.5E-13 113.8 15.0 135 90-260 2-159 (370)
69 PRK09961 exoaminopeptidase; Pr 98.9 1.1E-07 2.3E-12 107.6 20.4 151 197-363 164-333 (344)
70 TIGR01891 amidohydrolases amid 98.8 4.7E-08 1E-12 110.8 15.6 132 91-262 3-151 (363)
71 PRK09864 putative peptidase; P 98.8 2.5E-07 5.5E-12 104.6 21.0 146 197-363 173-341 (356)
72 TIGR01887 dipeptidaselike dipe 98.8 4.3E-08 9.3E-13 114.6 14.8 123 87-246 2-153 (447)
73 TIGR03320 ygeY M20/DapE family 98.7 1.4E-07 3.1E-12 108.1 15.3 135 86-260 12-168 (395)
74 TIGR03526 selenium_YgeY putati 98.7 2.2E-07 4.7E-12 106.7 16.1 122 87-246 13-156 (395)
75 PRK08737 acetylornithine deace 98.7 2E-07 4.4E-12 106.1 14.4 131 86-262 5-156 (364)
76 COG4187 RocB Arginine degradat 98.6 3.5E-07 7.7E-12 102.6 12.4 159 83-265 4-210 (553)
77 PLN02693 IAA-amino acid hydrol 98.5 1.6E-06 3.5E-11 101.2 16.1 120 89-246 49-182 (437)
78 PLN02280 IAA-amino acid hydrol 98.5 2.1E-06 4.6E-11 101.2 16.8 133 90-258 96-243 (478)
79 COG4310 Uncharacterized protei 98.2 7.9E-06 1.7E-10 88.3 12.0 171 178-366 177-356 (435)
80 PF05343 Peptidase_M42: M42 gl 98.0 1.8E-05 3.9E-10 87.7 9.0 130 197-342 132-282 (292)
81 KOG2276 Metalloexopeptidases [ 97.9 0.00011 2.3E-09 82.6 13.8 141 85-247 14-180 (473)
82 KOG2657 Transmembrane glycopro 97.2 0.0027 5.9E-08 73.3 12.4 187 161-349 156-374 (596)
83 COG2195 PepD Di- and tripeptid 96.5 0.0061 1.3E-07 70.6 7.7 60 198-260 143-203 (414)
84 PF04114 Gaa1: Gaa1-like, GPI 96.1 0.31 6.6E-06 58.4 19.3 184 161-366 2-228 (504)
85 COG1473 AbgB Metal-dependent a 95.8 0.17 3.7E-06 58.6 15.2 133 93-260 14-163 (392)
86 PRK02813 putative aminopeptida 90.2 1 2.2E-05 52.9 8.8 141 195-347 230-415 (428)
87 PTZ00371 aspartyl aminopeptida 87.6 4.2 9.1E-05 48.4 11.6 148 195-349 247-444 (465)
88 PRK02256 putative aminopeptida 78.4 2.9 6.4E-05 49.6 5.3 57 182-244 245-301 (462)
89 KOG3566 Glycosylphosphatidylin 62.1 28 0.00061 42.0 8.4 76 161-247 119-194 (617)
90 PRK08126 hypothetical protein; 53.3 4.3E+02 0.0093 31.4 16.3 52 181-233 355-408 (432)
91 PF05297 Herpes_LMP1: Herpesvi 46.9 6.4 0.00014 43.2 0.0 7 394-400 39-45 (381)
92 PF10190 Tmemb_170: Putative t 40.9 2.2E+02 0.0049 27.2 9.2 49 421-470 32-80 (105)
93 PRK08651 succinyl-diaminopimel 34.1 80 0.0017 36.2 6.4 56 306-366 338-393 (394)
94 PRK07033 hypothetical protein; 29.4 1E+03 0.022 28.3 17.2 54 180-234 345-400 (427)
95 PRK07522 acetylornithine deace 29.2 1.4E+02 0.003 34.0 7.2 74 276-364 311-384 (385)
96 PF07466 DUF1517: Protein of u 26.8 9.5E+02 0.021 27.0 18.2 47 204-250 240-286 (289)
97 PF06781 UPF0233: Uncharacteri 25.7 1.2E+02 0.0027 27.9 4.7 11 59-69 46-56 (87)
98 PRK08596 acetylornithine deace 25.6 1.3E+02 0.0029 35.0 6.3 56 306-366 363-418 (421)
99 PF12911 OppC_N: N-terminal TM 25.6 77 0.0017 26.0 3.2 36 651-686 8-43 (56)
100 PF10337 DUF2422: Protein of u 24.9 1.2E+03 0.026 27.7 14.2 32 585-616 187-218 (459)
101 KOG3533 Inositol 1,4,5-trispho 22.7 2.1E+03 0.046 29.7 19.9 47 444-493 2261-2307(2706)
102 PF05656 DUF805: Protein of un 21.9 6.7E+02 0.015 23.6 9.4 11 572-582 65-75 (120)
103 PF05421 DUF751: Protein of un 21.9 3.1E+02 0.0068 23.7 6.1 29 637-665 13-41 (61)
104 PRK07338 hypothetical protein; 20.9 1.5E+02 0.0032 34.2 5.4 56 305-366 344-400 (402)
105 PF09971 DUF2206: Predicted me 20.8 1.3E+03 0.028 26.9 12.8 23 638-660 123-145 (367)
106 PRK13755 putative mercury tran 20.3 4E+02 0.0087 26.3 7.1 29 549-579 98-126 (139)
107 TIGR01880 Ac-peptdase-euk N-ac 20.3 1.7E+02 0.0037 33.6 5.8 56 306-365 343-399 (400)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=3.8e-134 Score=1182.12 Aligned_cols=792 Identities=31% Similarity=0.526 Sum_probs=674.2
Q ss_pred CCCcCcchhhhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccC--CCCCCHHHHHHHHHHHHcCCCCCCCCHHHH
Q 002481 33 NDSIHVSSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAG--RRGFSELEAMKHVKALTQLGPHAVGSDALD 110 (917)
Q Consensus 33 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~~~~~~--~~~fs~erA~~~L~~L~~igpr~~GS~~n~ 110 (917)
.|+..+.+++|..+.++..+..++... +..+.++++|.|++..++. +++|+++||++++++++++|||++||++|+
T Consensus 3 ~~~~~~~~~~r~~~~~~~~~~f~~~~~--~~~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne 80 (834)
T KOG2194|consen 3 LDKSFRRKRKRNGAPCLAHLIFLLSIA--IVLYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNE 80 (834)
T ss_pred chhHhhhhhhhccchHHHHHHHHHHHH--HHHHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhH
Confidence 344555566776666655555444433 3445667777776655444 689999999999999999999999999997
Q ss_pred -HHHHHHHHHHHhcccccCCc-ceEEEEEEeccCCCcccccccc--cCccccccccceEEEEEcCCCCCCCCCCEEEEEe
Q 002481 111 -RALQYVLAASQKIKESKHWE-ADVEVDFFHAKSGANRVGTGVF--KGKTLIYSDLNHIVLRILPKYASEAGENAILVSS 186 (917)
Q Consensus 111 -~a~~yL~~~l~~ig~~~~~~-~~vevd~f~~~~g~~~~~g~~~--~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~A 186 (917)
.+++|+++|++++++++..+ +++|+|.+..+ +.| ++++++|++++||++|+.+|. ..++.++|++|
T Consensus 81 ~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~s--------g~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlna 150 (834)
T KOG2194|consen 81 MHASSFILKEVNKIRKGSQSDLYDMEVDLQSAS--------GSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNA 150 (834)
T ss_pred HHHHHHHHHHHHHHHhhhhcchhhheeceeecc--------ceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeec
Confidence 99999999999999876553 56777765421 223 678999999999999999973 34456999999
Q ss_pred eccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcCCC
Q 002481 187 HIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGG 266 (917)
Q Consensus 187 H~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~gG 266 (917)
|+||||++|||+||++|||+|||++|++.+.....+|+|+|+||++||.+++|||+|++||||+++++++||||++|+||
T Consensus 151 HfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGG 230 (834)
T KOG2194|consen 151 HFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGG 230 (834)
T ss_pred cccccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCccc
Confidence 99999999999999999999999999999987778999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCChHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCH
Q 002481 267 RSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKP 346 (917)
Q Consensus 267 ~~~lfq~g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~ 346 (917)
++++||+||++|+++.|.++++||+++++++|+||+|+|||||||++|++|+|+||+|+|+..|++.|||++|.++++.+
T Consensus 231 reiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~ 310 (834)
T KOG2194|consen 231 REILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPP 310 (834)
T ss_pred ceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCc
Confidence 99999999966999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCeEEecccCceEEEeechhHHHHHHHHHHHHHHHHHHHhhcc
Q 002481 347 GSLQHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMG 426 (917)
Q Consensus 347 ~sLq~~g~~vl~lv~~la~~~~l~~~~~~~~~~~~~~~~~VyFD~lG~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~~ 426 (917)
+++||+|+|++++++.++|+ ++.+ .++++++ +||||++|++|+.|+++++++||++++. .++ +...++
T Consensus 311 gs~q~tGen~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~---~i~-l~~~~~ 378 (834)
T KOG2194|consen 311 GSLQHTGENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITICI---SIW-LMSLRS 378 (834)
T ss_pred chhhhhhhHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhhh---hhh-hhhhcc
Confidence 99999999999999999998 5542 3456677 9999999999999999999999933332 222 333444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcceecchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002481 427 GYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQ 506 (917)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~~gLy~~p~~~g~~~~~~~~~~~~~~~~~~~ 506 (917)
+...++++.++++.+++++++++++++++|++++.++ .+|+||++||+++|||.||+++|+.+++.++....++
T Consensus 379 g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~~----- 452 (834)
T KOG2194|consen 379 GSSQLGKFILACLLQILSIVVAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSKR----- 452 (834)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhccc-----
Confidence 4335889999999999999999999999999999884 6999999999999999999999999999874321111
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhcccccCCCchHHH
Q 002481 507 YSKGMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLA 586 (917)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~t~~~i~S~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (917)
++ +...+.+++++|+ +|++|++++|++||||+|++++|+++++++ ++++....+|.++..|..
T Consensus 453 --~~----------~~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~ 515 (834)
T KOG2194|consen 453 --HS----------LEYLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLI 515 (834)
T ss_pred --cc----------cchhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeee
Confidence 01 1123456778886 788889999999999999999999999998 557788889999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHH
Q 002481 587 TLLLGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASF 666 (917)
Q Consensus 587 ~~~~~~~~P~~~~~~l~~~~~~~~~p~~gR~g~~~~~~P~~~~D~~ia~~~a~~~~l~~~~l~P~i~~~~~~~~i~~~l~ 666 (917)
++++||+.|+.+.+|.+++++.+|+|||||+|.+. ||| .+||.++++++.+.++|++|++|+|||++.|+.+++
T Consensus 516 ~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~ 589 (834)
T KOG2194|consen 516 TLLICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLF 589 (834)
T ss_pred eeeeeehHhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHH
Confidence 99999999999999999999999999999999754 895 999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCCcCc-cceeEEEEEEeccCC------------CCcccCCCccccccccCCCCchhH---HHh
Q 002481 667 ILVGLSIIMVSSGIIPPFSEET-ARAVNIVHIVDASGK------------FGGKQEPSSYIALYSATPGKLTKE---VEQ 730 (917)
Q Consensus 667 ~~~~~~~~~~~~~~~~Pf~~~~-~~r~~~~h~~r~~~~------------~~~~~d~~~~~~~~~~~~~~l~~~---~~~ 730 (917)
.++.+++++++|.++|||++++ ++|++++|++|+.++ ++..+|+|......+ +-.+++++ ..+
T Consensus 590 ~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~-~~~~~~~~~~~~~~ 668 (834)
T KOG2194|consen 590 GITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPF-TKSNLTDLSSVQAD 668 (834)
T ss_pred HHHHHHHHHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccccccCCcc-hhhccccccccccc
Confidence 8888888888999999999875 679999999999543 233455554433222 22233333 356
Q ss_pred cccCccCCCCcccccccccccccceeccCCCCccCCCC-------CCeeEeeccceeccCCCCCeEEEEEEEeCCCCcEE
Q 002481 731 IKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSD-------IPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLT 803 (917)
Q Consensus 731 C~~el~CG~p~~~~~~~~~~y~~~~~~~~~~~~Wlp~~-------~p~l~l~sk~~~~~~~~~~~~~~~~~~~~G~~~~s 803 (917)
|+.+++||+| +|+ |.+.+.+++|+|++ +|++++++|+. .+ +...|+++++.|++|++
T Consensus 669 ~~~~~~c~~p---------~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~~----~~-~~~~r~~~~i~~~d~~s 732 (834)
T KOG2194|consen 669 CDDEMMCGMP---------VYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKTS----LD-NGNLRYEFSITGTDHIS 732 (834)
T ss_pred ccccccCCce---------eee--ccccCccceEecCCccccCCCCceEEEeeccc----cC-CCceEEEEEEeccCceE
Confidence 9999999996 875 99999999999995 36899999965 33 55889999999999999
Q ss_pred EEeec---eeecccccc-ccCCCCCCCCccEEEEEEec-CCCceEEEEEEEeccccccccCCCCCCCCCCCeEEEe----
Q 002481 804 LAINA---KEIEDFTFK-VPRDAKSSIYGWHIIEFSGG-KNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLR---- 874 (917)
Q Consensus 804 l~i~p---~~l~~WSf~-~~~~~~~~~~~~y~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~p~~~l~---- 874 (917)
++|.| +++.+|||. .|..+. .+ +|+||++|| ++.|++||+|+++. + +.+++| +|++
T Consensus 733 ~~i~p~~d~~~~~wsf~~~~~~~~--~~-~~~i~~~yg~~~~p~~F~lel~~~----------~-~~~~v~-~k~~~~~h 797 (834)
T KOG2194|consen 733 LFISPLNDVKVLDWSFTTSPLTEN--KT-PYHIYFSYGLDSTPLNFWLELEKE----------E-GVTDVP-FKLGVSAH 797 (834)
T ss_pred EEEEecCCceEEEEeccCCccccc--CC-ceEEEEEeecCCCCceEEEEEeec----------c-CccCCc-eEEeeeee
Confidence 99999 599999997 666442 23 499999999 56999999999997 2 367888 8888
Q ss_pred --cCCCCCCHHHHHHHhcCCCCcccccccCCCccccc
Q 002481 875 --TDFDRLTPKTERVLSKLPPWCSLFEGSISSQPLSF 909 (917)
Q Consensus 875 --~~~~~~t~~~~~fl~~fP~wa~~~~~~~~~~~~~~ 909 (917)
+|.+++||++++|+++|||||+.+++|+|+.+..|
T Consensus 798 ~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 798 YIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF 834 (834)
T ss_pred eccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence 67889999999999999999999999999987654
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.95 E-value=1.6e-26 Score=255.98 Aligned_cols=260 Identities=19% Similarity=0.258 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc-ccccccc
Q 002481 86 ELEAMKHVKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT-LIYSDLN 163 (917)
Q Consensus 86 ~erA~~~L~~L~~-igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~-~~Y~~~~ 163 (917)
.+-|.+++++|+. +++|.+||+++.++++||.++++++|. +++.+.|..... .... .+.. .......
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~------~v~~q~f~~~~~-~~~~----~g~~~~~~~~g~ 98 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGY------QSDIRTFNSRYI-YTAR----DNRKNWHNVTGS 98 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCC------ceEeeeccccce-eecc----cccccccCCccc
Confidence 4566778888876 899999999999999999999999984 444443332100 0000 0000 0112468
Q ss_pred eEEEEEcCCCCCCCCCCEEEEEeeccccCC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEE
Q 002481 164 HIVLRILPKYASEAGENAILVSSHIDTVSA--------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (917)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (917)
|||++++|+ .++.|+++||+|||+. .+||.||++|||+|||++|.|++. +++++|+|++
T Consensus 99 nVIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~ 171 (346)
T PRK10199 99 TVIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVA 171 (346)
T ss_pred eEEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEE
Confidence 999999874 3468999999999852 479999999999999999999864 5788999999
Q ss_pred eCCcCCCCcchHHHHhcCCC--cCCceEEEEeecCcCCCCceeeecCCC-hHHH-----HHHHHHccCCCCcccc-----
Q 002481 230 NTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGPN-LWAV-----ENFAAVAKYPSGQIIG----- 296 (917)
Q Consensus 230 ~~aEE~gl~GS~~f~~~h~~--~~~v~a~iNLD~~G~gG~~~lfq~g~~-~~li-----~~y~~~a~~p~~~~l~----- 296 (917)
+++||.|+.||+.|+++++. .+++.++||+|+++.+ ....+..|.+ ...+ +...+.+ ...|..+.
T Consensus 172 ~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a-~~~g~~~~~~~~~ 249 (346)
T PRK10199 172 TSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIA-RRHGIAATTNPGL 249 (346)
T ss_pred ECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHH-HHcCCccccCCCc
Confidence 99999999999999976543 4689999999999875 4445555542 2211 1112222 12222221
Q ss_pred cccccCCCCCCCCchHHhhhcCCCeEEEEeec-------------------CCCCCCC-CcCCCcCCCCH-------HHH
Q 002481 297 QDLFASGVFETATDFQVYTEVAGLSGLDFAYT-------------------DKSAVYH-TKNDRLDLLKP-------GSL 349 (917)
Q Consensus 297 ~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~-------------------~~~~~YH-T~~Dt~d~i~~-------~sL 349 (917)
+..|..| ....|||.+|.+ .|||++.+... ..+..+| |.+|+.++++. ..+
T Consensus 250 ~~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~ 327 (346)
T PRK10199 250 NKNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRC 327 (346)
T ss_pred cccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHH
Confidence 1223334 346799999999 99999987421 2356789 89999999885 255
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 002481 350 QHLGENMLDFLLQTASST 367 (917)
Q Consensus 350 q~~g~~vl~lv~~la~~~ 367 (917)
....+.++.++.+||++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 328 RDVVRIMLPLVKELAKAS 345 (346)
T ss_pred HhHHHHHHHHHHHHhccC
Confidence 567788999999999763
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=1.4e-28 Score=250.34 Aligned_cols=170 Identities=31% Similarity=0.488 Sum_probs=132.0
Q ss_pred CEEEEEeeccccC------CCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhc-CCCcCC
Q 002481 180 NAILVSSHIDTVS------AGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 252 (917)
Q Consensus 180 ~~VLl~AH~DSv~------~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~-h~~~~~ 252 (917)
++|+++|||||++ .++||+||++|||+|||+||.|++.+.+++++|+|+|+++||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 899999999999999999999999777889999999999999999999999963 345689
Q ss_pred ceEEEEeecCcCCCCceeeecCC-ChHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHhhhcCCCeEEEEeecC-C
Q 002481 253 IRVAVDLEAMGIGGRSALFQAGP-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTD-K 330 (917)
Q Consensus 253 v~a~iNLD~~G~gG~~~lfq~g~-~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 330 (917)
+.++||+|++|.+++....+..+ .++.++.+.+...++.+.....+.+.....+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 99999999999998888877654 23434444333323333333333433234557899999997 999999999888 7
Q ss_pred CCCCCCcCCCcCCCCHHHHH
Q 002481 331 SAVYHTKNDRLDLLKPGSLQ 350 (917)
Q Consensus 331 ~~~YHT~~Dt~d~i~~~sLq 350 (917)
.+.|||+.||++++++++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78899999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.87 E-value=4.9e-22 Score=236.82 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=160.3
Q ss_pred ccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHh---cCCCCCccEEEEEeCCcCC
Q 002481 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQ---WAHEFKNAVIFLFNTGEEE 235 (917)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~---~~~~p~~~I~Flf~~aEE~ 235 (917)
-..++||+++|+|+ ++++++|+++||.|||. .||.|+++|+|.|+|++|.+.. .+++|+|+|+|++|+|||.
T Consensus 335 ~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf 409 (702)
T KOG2195|consen 335 ETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF 409 (702)
T ss_pred eeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc
Confidence 34789999999996 58999999999999996 7899999999999999999865 6799999999999999999
Q ss_pred CCcchHHHHhcCCC--cCCceEEEEeecCcCCCCceeeecCCChHHHHHHHHH---ccCCCCcccccccccCCCCCCCCc
Q 002481 236 GLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAV---AKYPSGQIIGQDLFASGVFETATD 310 (917)
Q Consensus 236 gl~GS~~f~~~h~~--~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~y~~~---a~~p~~~~l~~e~f~~g~ips~TD 310 (917)
|+.||..|+++|.. ...+.++||+|+++.++...-.+ ++|.+.+...++ .+.|........+ .....+||
T Consensus 410 GliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~--~~PlL~~li~~~~k~~~~p~~~~~~~~v---~~~g~~Sd 484 (702)
T KOG2195|consen 410 GLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK--TTPLLTDLIEEAAKSVLSPDKGDQSNRV---LSLGGGSD 484 (702)
T ss_pred cccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe--cCccHHHHHHHHHhccCCCCccccceeE---eccCCCCc
Confidence 99999999998854 47899999999999886543333 455555444443 3445433221111 12368999
Q ss_pred hHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCC----CHH--HHHHHHHHHHHHHHHHhcCCCCCCC
Q 002481 311 FQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLL----KPG--SLQHLGENMLDFLLQTASSTSIPKG 372 (917)
Q Consensus 311 ~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----~~~--sLq~~g~~vl~lv~~la~~~~l~~~ 372 (917)
|.+|..+.|||+++++|....+.|||.+||++.+ |+. .+..++.+....+..+++.+.+|.+
T Consensus 485 ~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 485 YASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFD 552 (702)
T ss_pred chhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 9999999999999999999999999999995543 332 4445566667777777777777754
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-18 Score=180.66 Aligned_cols=249 Identities=18% Similarity=0.255 Sum_probs=186.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002481 82 RGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (917)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (917)
+.-+-.|.++.|+.+- -||.+||+++.++++||.+.++.++ ..+|.|.|+... . ..+.+
T Consensus 46 ~~s~~~~~~~~L~p~l--v~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~t--------p-----~g~~~ 104 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPIL--VPRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNT--------P-----LGTRN 104 (338)
T ss_pred CCCCHHHHHHhhhhhh--ccccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccC--------c-----ceeee
Confidence 3456778888877775 4899999999999999999999996 678888876431 0 12347
Q ss_pred cceEEEEEcCCCCCCCCCCEEEEEeeccccCCC----CCCCCChhHHHHHHHHHHHHHhc----CCCCCccEEEEEeCCc
Q 002481 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAG----EGAGDCSSCVAVMLELARVMSQW----AHEFKNAVIFLFNTGE 233 (917)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s----pGA~Dd~sgva~~LE~ar~L~~~----~~~p~~~I~Flf~~aE 233 (917)
..|||+++.+. ..+++++.|||||.-.. .||.|.+..||.||++++.+.+. ...++-++.++|+|||
T Consensus 105 f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 105 FNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred eeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 89999999763 56889999999997432 58999999999999999999763 2346678999999999
Q ss_pred C--------CCCcchHHHHhcC------C-----CcCCceEEEEeecCcCCCCce--eeecCCChHHHHHH--H-H----
Q 002481 234 E--------EGLNGAHSFVTQH------P-----WSTTIRVAVDLEAMGIGGRSA--LFQAGPNLWAVENF--A-A---- 285 (917)
Q Consensus 234 E--------~gl~GS~~f~~~h------~-----~~~~v~a~iNLD~~G~gG~~~--lfq~g~~~~li~~y--~-~---- 285 (917)
| ..+.||++.++++ + ..+.+..++-+|-.|+.+++. .|.. ++.|..+.- . +
T Consensus 180 EAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~ 258 (338)
T KOG3946|consen 180 EAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELALL 258 (338)
T ss_pred HHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHHH
Confidence 9 4778999998762 1 124677888889999887763 2221 234433211 0 1
Q ss_pred --HccCCCCcccccccccCCCCC--CCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHH
Q 002481 286 --VAKYPSGQIIGQDLFASGVFE--TATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (917)
Q Consensus 286 --~a~~p~~~~l~~e~f~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~ 361 (917)
...++. -...||.|... -+.||.||.+ .|+|.+.++......+|||+.|+..++|..+..|++..+-.++.
T Consensus 259 g~l~s~r~----~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~ 333 (338)
T KOG3946|consen 259 GLLASHRL----PPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVA 333 (338)
T ss_pred HHHHhccC----CchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHH
Confidence 112221 11235543221 3789999999 99999999999999999999999999999999998877766665
Q ss_pred H
Q 002481 362 Q 362 (917)
Q Consensus 362 ~ 362 (917)
+
T Consensus 334 e 334 (338)
T KOG3946|consen 334 E 334 (338)
T ss_pred H
Confidence 4
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.67 E-value=1.8e-16 Score=183.28 Aligned_cols=188 Identities=26% Similarity=0.314 Sum_probs=132.6
Q ss_pred ccceEEEEEcCCCC-------CCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCc
Q 002481 161 DLNHIVLRILPKYA-------SEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (917)
Q Consensus 161 ~~~NVi~~i~g~~~-------~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (917)
...|+++++++... ....++.+++++|+|+++.++||+||++|+|++||++|.|++. +|+++|+|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 44566666555300 1246789999999999999999999999999999999999984 49999999999999
Q ss_pred CCCCcchHHHHhcCC--CcCCceEEEEeecCcCCCCceeeecC---CC--hHHHHHHHHHccCCCCcccccccccCCCCC
Q 002481 234 EEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQAG---PN--LWAVENFAAVAKYPSGQIIGQDLFASGVFE 306 (917)
Q Consensus 234 E~gl~GS~~f~~~h~--~~~~v~a~iNLD~~G~gG~~~lfq~g---~~--~~li~~y~~~a~~p~~~~l~~e~f~~g~ip 306 (917)
|.|+.||+.|+.++. ..+++.+++|+||.|..++...++.. .+ ........+...++... .+. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----ccc-CCCC
Confidence 999999999996665 25778889999999997632223321 11 11111111111111111 111 1234
Q ss_pred CCCchHHhhhcCCCeEEEEeecCC-----CCCCCCcCCCcCCCCHHHHHHHHHHHHHH
Q 002481 307 TATDFQVYTEVAGLSGLDFAYTDK-----SAVYHTKNDRLDLLKPGSLQHLGENMLDF 359 (917)
Q Consensus 307 s~TD~~~F~~~~GIPgld~a~~~~-----~~~YHT~~Dt~d~i~~~sLq~~g~~vl~l 359 (917)
..+||.+|.+ +|+|++.+..... ..++||..|| ++ +..+++..+..+-..
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~ 389 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAAT 389 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhh
Confidence 5799999998 9999988765433 3579999999 88 887777766544443
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.50 E-value=1.7e-13 Score=157.76 Aligned_cols=127 Identities=20% Similarity=0.141 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccc
Q 002481 87 LEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (917)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (917)
.|.++.|.+|.+||. |...|++..++++|+.++++++| +++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~G------l~v~~D----------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESG------LETRFD----------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CEEEEc-----------------------
Confidence 588999999999853 66779999999999999999998 355554
Q ss_pred cccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCC---
Q 002481 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG--- 236 (917)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~g--- 236 (917)
...||+++++|+ +.+.++|++++|+||||. .|..|+..||++.||++|.|++.+.+|+++|.+++|.+||.+
T Consensus 54 -~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~ 128 (406)
T TIGR03176 54 -DVGNLYGRLVGT---EFPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFP 128 (406)
T ss_pred -CCCcEEEEecCC---CCCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCC
Confidence 457999999986 346689999999999994 689999999999999999999988899999999999999986
Q ss_pred --CcchHHHHhcC
Q 002481 237 --LNGAHSFVTQH 247 (917)
Q Consensus 237 --l~GS~~f~~~h 247 (917)
+.||+.+..+.
T Consensus 129 ~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 129 YVFWGSKNIFGLA 141 (406)
T ss_pred cccccHHHHhCCC
Confidence 99999998533
No 8
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.41 E-value=2.9e-12 Score=147.58 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHcCC------CCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccc
Q 002481 85 SELEAMKHVKALTQLG------PHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (917)
Q Consensus 85 s~erA~~~L~~L~~ig------pr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (917)
+.+++++++.+|.+|+ .|+..|+++.++++||.++|+++|. +++.+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~------~~~~~---------------------- 58 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGL------EVRRD---------------------- 58 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCC------EEEEc----------------------
Confidence 4689999999999875 3567788888999999999999983 34331
Q ss_pred ccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCC---
Q 002481 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE--- 235 (917)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~--- 235 (917)
...|++++++|+ ..+.+.|++++|+|+||. .|+.|+++|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 --~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~ 132 (414)
T PRK12890 59 --AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRF 132 (414)
T ss_pred --CCCcEEEEeCCC---CCCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccccccc
Confidence 235999999774 234578999999999995 57899999999999999999988778899999999999997
Q ss_pred --CCcchHHHHhc
Q 002481 236 --GLNGAHSFVTQ 246 (917)
Q Consensus 236 --gl~GS~~f~~~ 246 (917)
++.||+.+.+.
T Consensus 133 ~~~~~G~~~~~~~ 145 (414)
T PRK12890 133 GPSMIGSRALAGT 145 (414)
T ss_pred CCccccHHHHHcc
Confidence 67899888743
No 9
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.40 E-value=3.3e-12 Score=147.31 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHcCC--C-----CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCc
Q 002481 83 GFSELEAMKHVKALTQLG--P-----HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (917)
Q Consensus 83 ~fs~erA~~~L~~L~~ig--p-----r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 155 (917)
+++.+|.++++..|.+|| | |+..|.++.++++||.+++++.| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G------~~v~~~------------------- 60 (414)
T PRK12891 6 RVDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAG------CTVRVD------------------- 60 (414)
T ss_pred ccCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEC-------------------
Confidence 356679999999999985 2 67789999999999999999998 344432
Q ss_pred cccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCC
Q 002481 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (917)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~ 235 (917)
...||+++++|. +...+.|++++|+|+||. .|..|++.||+++|++++.|++.+.+++++|.|+++.+||.
T Consensus 61 -----~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~ 131 (414)
T PRK12891 61 -----AMGNLFARRAGR---DPDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEG 131 (414)
T ss_pred -----CCCCEEEEecCC---CCCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccc
Confidence 235999999874 234588999999999995 47789999999999999999998888999999999999998
Q ss_pred C-----CcchHHHH
Q 002481 236 G-----LNGAHSFV 244 (917)
Q Consensus 236 g-----l~GS~~f~ 244 (917)
+ +.||+.+.
T Consensus 132 ~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 132 SRFAPSMVGSGVFF 145 (414)
T ss_pred CcCCcccccHHHHh
Confidence 5 57998775
No 10
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.38 E-value=3.2e-12 Score=153.64 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHcCCC----------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccC
Q 002481 85 SELEAMKHVKALTQLGP----------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKG 154 (917)
Q Consensus 85 s~erA~~~L~~L~~igp----------r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~ 154 (917)
-.+|.++++.+|++|+. |...|++..++++|+.++++++|.+ ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~-----~v~~D------------------ 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFD-----EVHID------------------ 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCC-----eeeEC------------------
Confidence 46899999999999753 3345899999999999999999830 34443
Q ss_pred ccccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcC
Q 002481 155 KTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (917)
Q Consensus 155 ~~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (917)
...||+++++|+ .+..+.|++++|+|||+. .|..|+..||+++||++|.|.+.+.+++++|.|++|.+||
T Consensus 236 ------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EE 305 (591)
T PRK13590 236 ------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEE 305 (591)
T ss_pred ------CCCCEEEEecCC---CCCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCc
Confidence 458999999885 234578999999999984 6789999999999999999999888889999999999999
Q ss_pred C-----CCcchHHHHh
Q 002481 235 E-----GLNGAHSFVT 245 (917)
Q Consensus 235 ~-----gl~GS~~f~~ 245 (917)
. ++.||+.+..
T Consensus 306 g~rF~~~~~GS~~~~G 321 (591)
T PRK13590 306 GQRYKATFLGSGALIG 321 (591)
T ss_pred cccCCccccchHHHhC
Confidence 7 5899998864
No 11
>PRK09133 hypothetical protein; Provisional
Probab=99.38 E-value=5.8e-12 Score=147.65 Aligned_cols=150 Identities=18% Similarity=0.219 Sum_probs=116.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEE-EEEEeccCCCcccccccccCcccccc
Q 002481 82 RGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVE-VDFFHAKSGANRVGTGVFKGKTLIYS 160 (917)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~ve-vd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (917)
++++.+++.+.|++|.+|. -+.+..++.++.+||.++++++|.+ ++ ++.+.. ..
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~-S~s~~~~e~~~~~~l~~~l~~~G~~------~~~~~~~~~------------------~~ 86 (472)
T PRK09133 32 PTADQQAARDLYKELIEIN-TTASTGSTTPAAEAMAARLKAAGFA------DADIEVTGP------------------YP 86 (472)
T ss_pred cchhHHHHHHHHHHHhccC-CCCCCcchHHHHHHHHHHHHHcCCC------ceEEEeccC------------------CC
Confidence 5688999999999999973 3332344568999999999999842 21 121110 01
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 220 (917)
+..||+++++|+ .+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+.+..
T Consensus 87 ~~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~ 162 (472)
T PRK09133 87 RKGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFK 162 (472)
T ss_pred CceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCC
Confidence 457999999774 23367999999999984 389999999999999999999887778
Q ss_pred CCccEEEEEeCCcC-CCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 221 FKNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 221 p~~~I~Flf~~aEE-~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
++++|.|++..+|| .|..|++.++++++...+..++|+ |.
T Consensus 163 ~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 163 PKRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 89999999999999 889999999977654334567788 64
No 12
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.37 E-value=3.3e-12 Score=153.49 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHcCC----------CCCCCCHHHHHHHHHHHHHHHhcccccCCcce-EEEEEEeccCCCccccccccc
Q 002481 85 SELEAMKHVKALTQLG----------PHAVGSDALDRALQYVLAASQKIKESKHWEAD-VEVDFFHAKSGANRVGTGVFK 153 (917)
Q Consensus 85 s~erA~~~L~~L~~ig----------pr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~ 153 (917)
..+|.+++|.+|++|| .|...|++..++++|+.+++++.| ++ +++|
T Consensus 179 ~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~G------l~~v~~D----------------- 235 (591)
T PRK13799 179 IGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAG------FDEVEID----------------- 235 (591)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CCeEeEC-----------------
Confidence 6789999999999986 156779999999999999999998 34 5554
Q ss_pred CccccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCc
Q 002481 154 GKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (917)
Q Consensus 154 ~~~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (917)
...||+++++|+ +...+.|++++|+|||+ ..|..|+..||+++||++|.|.+.+.+++++|.++.|.+|
T Consensus 236 -------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~-~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~E 304 (591)
T PRK13799 236 -------AVGNVVGRYKAA---DDDAKTLITGSHYDTVR-NGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEE 304 (591)
T ss_pred -------CCCCEEEEcCCC---CCCCCeEEEeccccccC-CCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 458999999885 24568999999999998 5889999999999999999999999999999999999999
Q ss_pred CC-----CCcchHHHHh
Q 002481 234 EE-----GLNGAHSFVT 245 (917)
Q Consensus 234 E~-----gl~GS~~f~~ 245 (917)
|. ++.||+.+..
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 305 EGQRFKATFLGSGALIG 321 (591)
T ss_pred CccCCCccccchHHHhC
Confidence 97 7899999974
No 13
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.37 E-value=5.9e-12 Score=144.59 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccc
Q 002481 87 LEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (917)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (917)
+|.+++|..+.+++. |...|+++.++++||.+++++.|. ++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~------~~~~~----------------------- 51 (401)
T TIGR01879 1 QRLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGL------EVRFD----------------------- 51 (401)
T ss_pred ChHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCC------EEEEe-----------------------
Confidence 367889999998853 445588888999999999999983 44432
Q ss_pred cccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCC----
Q 002481 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE---- 235 (917)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~---- 235 (917)
+..||+++++|+ ..+.+.|++++|+|+||. .|..|+..|++++|++++.|++.+.+++++|.|+++.+||.
T Consensus 52 -~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~ 126 (401)
T TIGR01879 52 -EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFP 126 (401)
T ss_pred -cCCcEEEEecCC---CCCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcc
Confidence 236999999874 223588999999999985 57899999999999999999998888999999999999997
Q ss_pred -CCcchHHHHhcC
Q 002481 236 -GLNGAHSFVTQH 247 (917)
Q Consensus 236 -gl~GS~~f~~~h 247 (917)
++.||+.++.+.
T Consensus 127 ~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 127 YGMWGSRNMVGLA 139 (401)
T ss_pred cccccHHHHhccc
Confidence 789999998544
No 14
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.36 E-value=8.6e-12 Score=143.75 Aligned_cols=130 Identities=20% Similarity=0.208 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002481 84 FSELEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (917)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (917)
.+.+++++++++|++|++ |+..|.++.++++||.++++++| ++++++
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g------~~~~~~-------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAG------LTVRVD-------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 467999999999999955 66778888899999999999998 334331
Q ss_pred ccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCC-
Q 002481 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE- 235 (917)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~- 235 (917)
...|++++++|. ..+.+.|++++|+|+||. .|..|++.|+|+|+++++.|.+.+.+++++|.|+++.+||.
T Consensus 58 ----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g 129 (413)
T PRK09290 58 ----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGS 129 (413)
T ss_pred ----CCCcEEEEecCC---CCCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccc
Confidence 235999999763 123578999999999985 46789999999999999999988777889999999999998
Q ss_pred ----CCcchHHHHhcC
Q 002481 236 ----GLNGAHSFVTQH 247 (917)
Q Consensus 236 ----gl~GS~~f~~~h 247 (917)
|+.|++.+++++
T Consensus 130 ~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 130 RFGPAMLGSRVFTGAL 145 (413)
T ss_pred cccCccccHHHHHccc
Confidence 578999988554
No 15
>PRK08262 hypothetical protein; Provisional
Probab=99.35 E-value=1.4e-11 Score=145.02 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCHHH-------HHHHH
Q 002481 42 KRSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDAL-------DRALQ 114 (917)
Q Consensus 42 ~~~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~~~~~~~~~fs~erA~~~L~~L~~igpr~~GS~~n-------~~a~~ 114 (917)
+|+++.++++++++.+ ++++..+.|+.-.-..+ .-.+-.++.+++.+.|++|.+|.. +.+.+++ .+..+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~L~~lv~i~S-~s~~~~~~~~~~~~~~~~~ 77 (486)
T PRK08262 2 RRILLGLLALLLLLAA-VLAVRTFRFKSRQIDVP--AVAPVAVDEDAAAERLSEAIRFRT-ISNRDRAEDDAAAFDALHA 77 (486)
T ss_pred cchHHHHHHHHHHHHH-hhhheeEEcccCCCCcc--ccCCCcCCHHHHHHHHHHhcccce-eccCCCCcccHHHHHHHHH
Confidence 5777777776665544 56777776654322221 222356889999999999999732 2332211 35788
Q ss_pred HHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC-
Q 002481 115 YVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA- 193 (917)
Q Consensus 115 yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~- 193 (917)
||.++++++|. .++.... +..|+++.++|+ +...+.|++.+|+|+||.
T Consensus 78 ~L~~~~~~~g~------~~~~~~~----------------------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~ 126 (486)
T PRK08262 78 HLEESYPAVHA------ALEREVV----------------------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVA 126 (486)
T ss_pred HHHHhChhhhc------eeEEEEE----------------------CCccEEEEEECC---CCCCCeEEEECcccccCCC
Confidence 88888887762 2332210 225888888764 223378999999999974
Q ss_pred ----------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhc
Q 002481 194 ----------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (917)
Q Consensus 194 ----------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~ 246 (917)
++|+.|+++|+|++|.+++.|.+.+..++++|.|+|..+||.|..|++.+++.
T Consensus 127 ~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 127 PGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 36999999999999999999998776788999999999999998899988853
No 16
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.31 E-value=2.2e-11 Score=140.04 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHcCCC-------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002481 84 FSELEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (917)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (917)
.+.++++++|++|++|.. |..+|.++.++.+||.++|+++|. +++++
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~------~~~~~-------------------- 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGL------TVSVD-------------------- 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCC------EEEEc--------------------
Confidence 467899999999999862 344577778999999999999983 34331
Q ss_pred ccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCC
Q 002481 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG 236 (917)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~g 236 (917)
+..|++++++|. ..+.+.|++++|+|+||. .|..|++.|+|++|++++.|++.+.+++++|.|+|+.+||.|
T Consensus 61 ----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 132 (412)
T PRK12893 61 ----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGA 132 (412)
T ss_pred ----CCCcEEEEeCCC---CCCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccc
Confidence 235999999774 123578999999999994 577899999999999999999887778999999999999986
Q ss_pred -----CcchHHHHhcC
Q 002481 237 -----LNGAHSFVTQH 247 (917)
Q Consensus 237 -----l~GS~~f~~~h 247 (917)
+.|+..+..++
T Consensus 133 ~~~~~~~G~~~~~~~~ 148 (412)
T PRK12893 133 RFAPAMLGSGVFTGAL 148 (412)
T ss_pred ccccccccHHHHhCcC
Confidence 88999888543
No 17
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.31 E-value=5.1e-11 Score=137.31 Aligned_cols=146 Identities=21% Similarity=0.288 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCH-HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002481 85 SELEAMKHVKALTQLGPHAVGSD-ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~-~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (917)
..+++.+.|++|++| |-..+.. ++.++.+||.++|+++|. +++.+... .....
T Consensus 35 ~~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~~l~~~L~~~G~------~v~~~~~~-------------------~~~~~ 88 (410)
T PRK06133 35 EQPAYLDTLKELVSI-ESGSGDAEGLKQVAALLAERLKALGA------KVERAPTP-------------------PSAGD 88 (410)
T ss_pred hHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHhCCC------eEEEEccC-------------------CCCCC
Confidence 446788889999997 3333332 345899999999999983 34433210 00346
Q ss_pred eEEEEEcCCCCCCCCCCEEEEEeeccccCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEE
Q 002481 164 HIVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (917)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (917)
|++++++|+ +.+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|.
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999763 2467999999999984 378999999999999999999987666778999
Q ss_pred EEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 227 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 227 Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
|+|..+||.|..|++.++++.. .+...++++|...
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~~ 198 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPGR 198 (410)
T ss_pred EEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCCC
Confidence 9999999999899999997643 2456778887443
No 18
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.31 E-value=2.9e-11 Score=139.03 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHcCCC------CCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002481 83 GFSELEAMKHVKALTQLGP------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (917)
Q Consensus 83 ~fs~erA~~~L~~L~~igp------r~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (917)
+.+.+|+++.+++|++|+. |+..|+++.++++||.++|+++|. +++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~------~~~~~-------------------- 59 (412)
T PRK12892 6 RIDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGL------AVRID-------------------- 59 (412)
T ss_pred cccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCC------EEEEc--------------------
Confidence 3467899999999999864 355677778999999999999983 34332
Q ss_pred ccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCC-
Q 002481 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE- 235 (917)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~- 235 (917)
+..|++++++|+ .+.+.|++++|+|+||. .|-.|+..|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 ----~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 130 (412)
T PRK12892 60 ----GIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGS 130 (412)
T ss_pred ----CCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccc
Confidence 235999999874 23378999999999985 46789999999999999999998888899999999999998
Q ss_pred ----CCcchHHHHhcC
Q 002481 236 ----GLNGAHSFVTQH 247 (917)
Q Consensus 236 ----gl~GS~~f~~~h 247 (917)
++.||+.++.++
T Consensus 131 ~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 131 RFTPGFLGSRAYAGRL 146 (412)
T ss_pred cccCccccHHHHHcCC
Confidence 568999998543
No 19
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.30 E-value=5.9e-11 Score=137.25 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 87 LEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
+++.+.|++|.+|. -+.+. .++.++.+||.++|+++| ++++.+. . +.+..||
T Consensus 13 ~~~~~~l~~Lv~i~-S~s~~~~~e~~~a~~l~~~l~~~G------~~~~~~~--~------------------~~~~~nv 65 (421)
T PRK08596 13 DELLELLKTLVRFE-TPAPPARNTNEAQEFIAEFLRKLG------FSVDKWD--V------------------YPNDPNV 65 (421)
T ss_pred HHHHHHHHHHhcCC-CCCCCchhHHHHHHHHHHHHHHCC------CeEEEEE--c------------------cCCCceE
Confidence 67889999999873 22222 244678999999999998 3344321 0 0134799
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
+++++|+. ....+.|++++|+|+||. ++|+.|++.|+|++|.+++.|.+.+..++.+
T Consensus 66 ia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 143 (421)
T PRK08596 66 VGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGD 143 (421)
T ss_pred EEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99997741 122357999999999874 2899999999999999999999887778899
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 002481 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
|.|+|..+||.|..|++.++++.. ....+++.|..
T Consensus 144 v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 144 LIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred EEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 999999999999999999986543 34677887753
No 20
>PRK07473 carboxypeptidase; Provisional
Probab=99.27 E-value=1.2e-10 Score=132.84 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCHHH-HHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccccc
Q 002481 84 FSELEAMKHVKALTQLGPHAVGSDAL-DRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (917)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~n-~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (917)
++.+++.+.|++|.+|. -+.+.+++ .++.+||.++|+++|. +++.. .... + ..
T Consensus 8 ~~~~~~~~~l~~Lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~------~-----------~~ 61 (376)
T PRK07473 8 FDSEAMLAGLRPWVECE-SPTWDAAAVNRMLDLAARDMAIMGA------TIERI--PGRQ------G-----------FG 61 (376)
T ss_pred cCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHcCC------eEEEe--cCCC------C-----------CC
Confidence 56889999999999984 34444443 5788999999999983 34432 1100 0 13
Q ss_pred ceEEEEEcCCCCCCCCCCEEEEEeeccccCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccE
Q 002481 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (917)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (917)
.|+++++++. ....+.|++++|+|+|+. ++|+.|+++|+|+||.+++.|.+.+..++.+|
T Consensus 62 ~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPI 138 (376)
T ss_pred CeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 5899988653 134578999999999953 48999999999999999999988765667789
Q ss_pred EEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 226 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 226 ~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
.|+|..+||.|..|++.+++++.. ...++|..|..+
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 999999999999999999965433 346778888654
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.26 E-value=6.9e-11 Score=134.29 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=106.4
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEc
Q 002481 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (917)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (917)
+.|++|.++..-...|.++.++++||.++++++|. +++... ...+ . .....|+++.+.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~------~~~~~~--~~~~-----------~---~~~~~~~~~~~~ 59 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGF------STDVIE--ITDD-----------R---LKVLGKVVVKEP 59 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCC------ceEEEe--cCch-----------h---cccccceEEecc
Confidence 46778888632111355667999999999999983 333321 1000 0 002346777776
Q ss_pred CCCCCCCCCCEEEEEeeccccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEE
Q 002481 171 PKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (917)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (917)
|+ .+.+.|++.+|+|+||.. +|+.|+++|+|++|++++.|.+.+.+++++|.|+|
T Consensus 60 g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (375)
T TIGR01910 60 GN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQS 135 (375)
T ss_pred CC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 63 245789999999999863 68999999999999999999987767889999999
Q ss_pred eCCcCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 230 NTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 230 ~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
+.+||.|..|++.++++ ...++...++..|..|
T Consensus 136 ~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~~ 168 (375)
T TIGR01910 136 VVDEESGEAGTLYLLQR-GYFKDADGVLIPEPSG 168 (375)
T ss_pred EcCcccCchhHHHHHHc-CCCCCCCEEEECCCCC
Confidence 99999999999999954 3333456777777543
No 22
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.24 E-value=9.9e-11 Score=133.01 Aligned_cols=140 Identities=19% Similarity=0.253 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
++++.+.|++|.++ |-+ |.++.++++||.++++++|. +++.+... .+..|+
T Consensus 1 ~~~~~~~l~~Lv~i-~s~--s~~e~~~~~~l~~~l~~~G~------~~~~~~~~--------------------~~~~~l 51 (377)
T PRK08588 1 EEEKIQILADIVKI-NSV--NDNEIEVANYLQDLFAKHGI------ESKIVKVN--------------------DGRANL 51 (377)
T ss_pred ChHHHHHHHHHhcC-CCC--CCcHHHHHHHHHHHHHHCCC------ceEEEecC--------------------CCCceE
Confidence 36788999999986 333 33456899999999999983 34432110 034799
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
++++ |. . .+.|++.+|+|+||. ++|+.|++.|+|++|++++.|.+.+..++.+
T Consensus 52 ~a~~-g~----~-~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 125 (377)
T PRK08588 52 VAEI-GS----G-SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGT 125 (377)
T ss_pred EEEe-CC----C-CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCc
Confidence 9998 42 1 278999999999985 3789999999999999999998877778899
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
|.|+|..+||.|..|++.++++ ...++...++..|.
T Consensus 126 i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 126 IRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred EEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 9999999999999999999954 33445556666664
No 23
>PRK07906 hypothetical protein; Provisional
Probab=99.21 E-value=1.2e-10 Score=134.67 Aligned_cols=130 Identities=25% Similarity=0.351 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCCCCC---CCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002481 90 MKHVKALTQLGPHAV---GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (917)
Q Consensus 90 ~~~L~~L~~igpr~~---GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (917)
.+.|++|.+|..-.. ..++++++++||.++++++|. +++.+. .. .+..|++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~--~~------------------~~~~nv~ 55 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGL------EPTYLE--SA------------------PGRANVV 55 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCC------CeEEee--cC------------------CCceEEE
Confidence 467888888733211 124567899999999999983 344321 00 1457999
Q ss_pred EEEcCCCCCCCCCCEEEEEeeccccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEE
Q 002481 167 LRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (917)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (917)
++++|+ ++..+.|++++|+|+||. ++|+.|++.|++++|++++.|++.+..++++|.
T Consensus 56 ~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~ 132 (426)
T PRK07906 56 ARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLV 132 (426)
T ss_pred EEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEE
Confidence 999764 234568999999999985 379999999999999999999988778899999
Q ss_pred EEEeCCcCCCC-cchHHHHhcCC
Q 002481 227 FLFNTGEEEGL-NGAHSFVTQHP 248 (917)
Q Consensus 227 Flf~~aEE~gl-~GS~~f~~~h~ 248 (917)
|+|+.+||.|. .|++.++++++
T Consensus 133 ~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 133 FAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred EEEecCcccchhhhHHHHHHHHH
Confidence 99999999964 69999986543
No 24
>PRK07907 hypothetical protein; Provisional
Probab=99.20 E-value=3e-10 Score=132.43 Aligned_cols=145 Identities=18% Similarity=0.224 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCC----HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002481 85 SELEAMKHVKALTQLGPHAVGS----DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS----~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (917)
..+++.+.|++|.+|.. +.+. .+..++++||.++++++|. .++++. .. .
T Consensus 16 ~~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~~l~~~l~~~g~-----~~~~~~--~~-------------------~ 68 (449)
T PRK07907 16 LLPRVRADLEELVRIPS-VAADPFRREEVARSAEWVADLLREAGF-----DDVRVV--SA-------------------D 68 (449)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCccchhhHHHHHHHHHHHHHHcCC-----ceEEEE--ec-------------------C
Confidence 35688899999998732 2221 2235899999999999982 023321 10 1
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCC
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAH 219 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~ 219 (917)
+..||+++++++ .+.+.|++++|+|+||. ++|+.|++.|+|++|.+++.| . .
T Consensus 69 ~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~--~ 141 (449)
T PRK07907 69 GAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G--G 141 (449)
T ss_pred CCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--c
Confidence 347999999763 24578999999999985 279999999999999999999 3 4
Q ss_pred CCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 220 EFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 220 ~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
+++++|.|++.++||.|..|++.+++++....+..++|..|..+
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 56789999999999999999999997654333456677777543
No 25
>PRK07338 hypothetical protein; Provisional
Probab=99.19 E-value=3.5e-10 Score=129.72 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002481 86 ELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (917)
.+++.+.|++|.++. -..+. ++..++.+||.++|+++|. ++++.. .. +. ... ...+....+....|
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~~--~~-~~-~~~--~~~~~~~~~~~~~n 82 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAELLADAFAALPG------EIELIP--LP-PV-EVI--DADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHhCCC------cEEEec--CC-cc-ccc--cccccccccCcCCe
Confidence 467788899999873 22222 2345899999999999984 333321 00 00 000 00001001124479
Q ss_pred EEEEEcCCCCCCCCCCEEEEEeeccccCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEE
Q 002481 165 IVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIF 227 (917)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~F 227 (917)
|+++++|+ .++.|++++|+|+||. ++|+.|+++|+|++|++++.|.+.+..++.+|.|
T Consensus 83 l~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 83 LHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 99999653 2246999999999974 3689999999999999999998876667789999
Q ss_pred EEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 002481 228 LFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 228 lf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
+|..+||.|..|++.++.++.. +..+.+.+|..
T Consensus 158 ~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 158 LINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 9999999999999999876542 34567777753
No 26
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.17 E-value=5.9e-10 Score=127.27 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCCCCCCCC---HHHHHHHHHHHHHHHhcccccCCcce-EEEEEEeccCCCcccccccccCcccccccc
Q 002481 87 LEAMKHVKALTQLGPHAVGS---DALDRALQYVLAASQKIKESKHWEAD-VEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS---~~n~~a~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (917)
+++.+.|++|.+|..- .+. .++.++++||.++|+++|. + ++....... . ......
T Consensus 5 ~~~~~~l~~lv~i~s~-s~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~-----~---------~~~~~~ 63 (400)
T PRK13983 5 DEMIELLSELIAIPAV-NPDFGGEGEKEKAEYLESLLKEYGF------DEVERYDAPDP-----R---------VIEGVR 63 (400)
T ss_pred HHHHHHHHHHhCcCCC-CCCCCCccHHHHHHHHHHHHHHcCC------ceEEEEecCCc-----c---------cccCCC
Confidence 5788999999987332 111 2356899999999999983 2 332110000 0 000025
Q ss_pred ceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 002481 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (917)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 221 (917)
.|++++++|. .+.+.|++++|+|+||. ++|+.|++.|++++|++++.|.+.+.++
T Consensus 64 ~nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~ 139 (400)
T PRK13983 64 PNIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRP 139 (400)
T ss_pred ccEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCC
Confidence 8999999774 23458999999999985 3789999999999999999999877788
Q ss_pred CccEEEEEeCCcCCCCc-chHHHHhcCCC-cCCceEEEEee
Q 002481 222 KNAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAVDLE 260 (917)
Q Consensus 222 ~~~I~Flf~~aEE~gl~-GS~~f~~~h~~-~~~v~a~iNLD 260 (917)
+++|.|+|..+||.|.. |++.++++++. .....+++..|
T Consensus 140 ~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 140 KYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CCcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 89999999999998885 89999866432 22344555544
No 27
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.17 E-value=2.7e-10 Score=133.87 Aligned_cols=137 Identities=17% Similarity=0.306 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
.+|+++.|++|++| +++ |.+++++++||.+++++.| ++++.+ ...|+
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~~l~~~l~~~G------~~~~~~------------------------~~~n~ 49 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSNFIVNWAKKLG------LEVKQD------------------------EVGNV 49 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHHHHHcC------CeEEEe------------------------CCCeE
Confidence 47899999999998 455 5566789999999999998 344433 23699
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCCC------------------------CCCC---CChhHHHHHHHHHHHHHhcC
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSAG------------------------EGAG---DCSSCVAVMLELARVMSQWA 218 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~s------------------------pGA~---Dd~sgva~~LE~ar~L~~~~ 218 (917)
+++++|+. +....+.|++++|+|+|+.. +|+. |++.|+|++|++++. .
T Consensus 50 ~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~- 124 (477)
T TIGR01893 50 LIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N- 124 (477)
T ss_pred EEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-
Confidence 99998742 12345789999999999842 4553 999999999999875 2
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 219 ~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
..++++|.++|+.+||.|+.||+.+..+. .....++|.|..+
T Consensus 125 ~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~~ 166 (477)
T TIGR01893 125 NLKHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSEE 166 (477)
T ss_pred CCCCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCCC
Confidence 33567999999999999999999997422 2346788888543
No 28
>PRK09104 hypothetical protein; Validated
Probab=99.17 E-value=4.4e-10 Score=131.62 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002481 85 SELEAMKHVKALTQLGPHAVGSD----ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~----~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (917)
..+++.+.|++|.+|.. ..+.+ ++.++.+||.++++++|. ++++. +. .
T Consensus 15 ~~~~~~~~L~~lv~i~S-vs~~~~~~~~~~~~~~~l~~~l~~~G~------~v~~~--~~-------------------~ 66 (464)
T PRK09104 15 NLDASLERLFALLRIPS-ISTDPAYAADCRKAADWLVADLASLGF------EASVR--DT-------------------P 66 (464)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCccchHHHHHHHHHHHHHHHHCCC------eEEEE--ec-------------------C
Confidence 45788899999998732 22222 235789999999999983 34332 10 0
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCC--------------------------CCCCCCChhHHHHHHHHHHHH
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------------GEGAGDCSSCVAVMLELARVM 214 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------------spGA~Dd~sgva~~LE~ar~L 214 (917)
+..||++++.|+ +...+.|++++|+|+||. ++|+.|++.|+|++|++++.|
T Consensus 67 ~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 236999999763 234678999999999863 257899999999999999999
Q ss_pred HhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 215 SQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 215 ~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
.+.+..++.+|.|+|.++||.|..|...++.+.....+..++|+.|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 98665677899999999999999999999865432234578888883
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.17 E-value=4.4e-10 Score=128.88 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccccc
Q 002481 83 GFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (917)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (917)
+.-.+++.+.|++|.+|.. +.++.++.++.+||.++++++|. +++. +... ...
T Consensus 5 ~~~~~~~~~~l~~lv~ipS-~~~~~~~~~~~~~l~~~l~~~G~------~~~~--~~~~------------------~g~ 57 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINT-VQPNPDYAACVDFLIKQADELGL------ARKT--IEFV------------------PGK 57 (400)
T ss_pred ccchHHHHHHHHHHhccCc-cCCCccHHHHHHHHHHHHHhCCC------ceeE--EEec------------------CCc
Confidence 4567899999999999833 22333346899999999999983 3322 1100 034
Q ss_pred ceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 002481 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (917)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 221 (917)
.|++++++|+ ....+.|++++|+|+||. ++|+.|+++++|++|++++.|.+.+.++
T Consensus 58 ~~l~~~~~g~---~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~ 134 (400)
T TIGR01880 58 PVVVLTWPGS---NPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKF 134 (400)
T ss_pred eeEEEEEecC---CCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 6899999774 123478999999999974 2789999999999999999999877778
Q ss_pred CccEEEEEeCCcCCCC-cchHHHHhcCCCcCCceEEEEee
Q 002481 222 KNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAVDLE 260 (917)
Q Consensus 222 ~~~I~Flf~~aEE~gl-~GS~~f~~~h~~~~~v~a~iNLD 260 (917)
+++|.|+|..+||.|. .|++.++++ ...+.+.+.+.+|
T Consensus 135 ~~~v~l~~~~dEE~g~~~G~~~~~~~-~~~~~~~~~~~~d 173 (400)
T TIGR01880 135 KRTIHISFVPDEEIGGHDGMEKFAKT-DEFKALNLGFALD 173 (400)
T ss_pred CceEEEEEeCCcccCcHhHHHHHHHh-hhccCCceEEEEc
Confidence 8999999999999875 699999854 2223345555554
No 30
>PRK06446 hypothetical protein; Provisional
Probab=99.16 E-value=4.5e-10 Score=130.57 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCHH-HHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 87 LEAMKHVKALTQLGPHAVGSDA-LDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~-n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
+++.+.|++|.+|.. +.+..+ ..++.+||.++++++|. +++.+. . .+..||
T Consensus 2 ~~~~~~l~eLV~i~S-~s~~~~~~~~~a~~l~~~l~~~G~------~ve~~~--~-------------------~~~~~l 53 (436)
T PRK06446 2 DEELYTLIEFLKKPS-ISATGEGIEETANYLKDTMEKLGI------KANIER--T-------------------KGHPVV 53 (436)
T ss_pred hhHHHHHHHHhCCCC-CCCCcHhHHHHHHHHHHHHHHCCC------eEEEEe--c-------------------CCCCEE
Confidence 467889999999733 222222 26899999999999983 444321 1 034799
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
++++++ .+.+.|++++|+|+||. ++|+.|+++|+|++|.+++.+.+.+ .++.+
T Consensus 54 ia~~~~-----~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~ 127 (436)
T PRK06446 54 YGEINV-----GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVN 127 (436)
T ss_pred EEEecC-----CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCC
Confidence 999853 23468999999999874 2799999999999999999887654 56789
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEE
Q 002481 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVD 258 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iN 258 (917)
|.|+|..+||.|..|++.++++++...+..++|.
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~ 161 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM 161 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999977653222344453
No 31
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.16 E-value=8e-10 Score=127.70 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002481 86 ELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (917)
.+++.+.|++|.++.. .... .++.++.+||.++|+++|. +++........+ . ..+.+..|
T Consensus 13 ~~~~~~~l~~Lv~i~S-~~~~g~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~~-----------~-~~~~~~~n 73 (427)
T PRK13013 13 RDDLVALTQDLIRIPT-LNPPGRAYREICEFLAARLAPRGF------EVELIRAEGAPG-----------D-SETYPRWN 73 (427)
T ss_pred HHHHHHHHHHHhcCCC-cCCCCccHHHHHHHHHHHHHHCCC------ceEEEecCCCCc-----------c-cccCCcce
Confidence 4678888999998732 2111 2336899999999999983 344321100000 0 01224579
Q ss_pred EEEEEcCCCCCCCCCCEEEEEeeccccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccE
Q 002481 165 IVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (917)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (917)
++++++|+ .+++.|++.+|+|+||. ++|+.|+++|+|++|.+++.|++.+.+++.+|
T Consensus 74 lia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 149 (427)
T PRK13013 74 LVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSI 149 (427)
T ss_pred EEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccE
Confidence 99999764 23478999999999984 27999999999999999999998776778899
Q ss_pred EEEEeCCcCCCCc-chHHHHhcCCCcC--CceEEEEeecC
Q 002481 226 IFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAVDLEAM 262 (917)
Q Consensus 226 ~Flf~~aEE~gl~-GS~~f~~~h~~~~--~v~a~iNLD~~ 262 (917)
.|+|..+||.|.. |.+.+++ ....+ +..++|..|..
T Consensus 150 ~~~~~~dEE~g~~~g~~~l~~-~~~~~~~~~d~~i~~ep~ 188 (427)
T PRK13013 150 EISGTADEESGGFGGVAYLAE-QGRFSPDRVQHVIIPEPL 188 (427)
T ss_pred EEEEEeccccCChhHHHHHHh-cCCccccCCCEEEEecCC
Confidence 9999999998776 5555553 33322 45666766643
No 32
>PRK08201 hypothetical protein; Provisional
Probab=99.15 E-value=6.1e-10 Score=130.10 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHcCCCCCCC---CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002481 85 SELEAMKHVKALTQLGPHAVG---SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~G---S~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (917)
..+++.+.|++|.+|..-..+ ..++.++++||.++|+++|.+ .++++. . .+
T Consensus 12 ~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~-------------------~~ 65 (456)
T PRK08201 12 RREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--T-------------------AG 65 (456)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--c-------------------CC
Confidence 347788999999987432111 123457899999999999831 133321 0 03
Q ss_pred cceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002481 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (917)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 220 (917)
..||++++.|. .+.+.|++++|+|+||. ++|+.|++.|+|++|++++.|.+.+..
T Consensus 66 ~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~ 141 (456)
T PRK08201 66 HPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGT 141 (456)
T ss_pred CCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCC
Confidence 35899988653 24578999999999874 379999999999999999999875556
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 002481 221 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 221 p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
++++|.|++..+||.|..|+..++++++..-...++|+.|..
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 678999999999999999999998765422223567777744
No 33
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.15 E-value=4.9e-10 Score=126.33 Aligned_cols=134 Identities=22% Similarity=0.238 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002481 85 SELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (917)
.++++.+.|++|.+|. -+ |..+.++++|+.++++++|. +++.+ +..|
T Consensus 4 ~~~~~~~~l~~Lv~i~-s~--s~~e~~~~~~l~~~l~~~G~------~~~~~------------------------~~~n 50 (348)
T PRK04443 4 SALEARELLKGLVEIP-SP--SGEEAAAAEFLVEFMESHGR------EAWVD------------------------EAGN 50 (348)
T ss_pred chHHHHHHHHHHHcCC-CC--CCChHHHHHHHHHHHHHcCC------EEEEc------------------------CCCc
Confidence 4678999999999973 23 34456899999999999983 33322 2358
Q ss_pred EEEEEcCCCCCCCCCCEEEEEeeccccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCC
Q 002481 165 IVLRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTG 232 (917)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~a 232 (917)
+++++.+ ..+.|++++|+|+||. ++|+.|++.|+|++|++++.| + .+++++|.|++..+
T Consensus 51 ~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~d 121 (348)
T PRK04443 51 ARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVE 121 (348)
T ss_pred EEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcc
Confidence 8998732 2368999999999974 489999999999999999999 3 46788999999999
Q ss_pred cCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 233 EEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 233 EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
||.|..|...+..+. . ...++|+.|..|
T Consensus 122 EE~g~~~~~~~l~~~-~--~~d~~iv~Ept~ 149 (348)
T PRK04443 122 EEAPSSGGARLVADR-E--RPDAVIIGEPSG 149 (348)
T ss_pred cccCChhHHHHHHhc-c--CCCEEEEeCCCC
Confidence 999988777666443 2 356777777433
No 34
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.13 E-value=5e-09 Score=117.48 Aligned_cols=225 Identities=19% Similarity=0.258 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002481 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (917)
++..+.|++|+++ +-+.|.+ +++++|++++|++++. +++.| +..||+
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~E--~eVr~~~~~el~~~~~------ev~~D------------------------~lGnli 48 (355)
T COG1363 2 EELLELLKELLEA-PGPSGYE--EEVRDVLKEELEPLGD------EVEVD------------------------RLGNLI 48 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCcH--HHHHHHHHHHHHHhCC------ceEEc------------------------CCCcEE
Confidence 3567889999985 4555544 5699999999999973 34443 568999
Q ss_pred EEEcCCCCCCCCCCEEEEEeeccccCCC----------------------------------------------------
Q 002481 167 LRILPKYASEAGENAILVSSHIDTVSAG---------------------------------------------------- 194 (917)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------------------------------------- 194 (917)
++++|+ ...+.|++.||+|.+..-
T Consensus 49 a~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~ 124 (355)
T COG1363 49 AKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKE 124 (355)
T ss_pred EEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCc
Confidence 999873 234559999999998520
Q ss_pred -------------------------------CC--------------------CCCChhHHHHHHHHHHHHHhcCCCCCc
Q 002481 195 -------------------------------EG--------------------AGDCSSCVAVMLELARVMSQWAHEFKN 223 (917)
Q Consensus 195 -------------------------------pG--------------------A~Dd~sgva~~LE~ar~L~~~~~~p~~ 223 (917)
+| |-||..||+++||++|.| + +..++.
T Consensus 125 ~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~ 202 (355)
T COG1363 125 EAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPA 202 (355)
T ss_pred cccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCc
Confidence 11 789999999999999999 4 578899
Q ss_pred cEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcCCCC--------------ceeee-c-CC-ChHHHHHHHHH
Q 002481 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGR--------------SALFQ-A-GP-NLWAVENFAAV 286 (917)
Q Consensus 224 ~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~gG~--------------~~lfq-~-g~-~~~li~~y~~~ 286 (917)
+++|+|+.-||.|+.||+....+ -+-..+|.+|..+++.. .+... . +. ++.+.+...+.
T Consensus 203 ~vy~v~tvqEEVGlrGA~~~a~~----i~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~ 278 (355)
T COG1363 203 DVYFVASVQEEVGLRGAKTSAFR----IKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLEL 278 (355)
T ss_pred eEEEEEecchhhccchhhccccc----cCCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 99999999999999999987632 23357777777766433 22222 2 23 56676666554
Q ss_pred ccCCCCcccccccccCCCCCCCCchHHhhhc-CCCeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 002481 287 AKYPSGQIIGQDLFASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 364 (917)
Q Consensus 287 a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la 364 (917)
|+. .+-.+-.++++. .+||-..+... .|+|...+...-. +-|++ .+.++.+.+.++.+.+.+++..+.
T Consensus 279 A~~-~~Ip~Q~~v~~~----ggTDA~a~~~~g~gvpta~Igip~r--y~Hs~---~e~~~~~D~~~~~~Ll~~~i~~~~ 347 (355)
T COG1363 279 AEK-NNIPYQVDVSPG----GGTDAGAAHLTGGGVPTALIGIPTR--YIHSP---VEVAHLDDLEATVKLLVAYLESLD 347 (355)
T ss_pred HHH-cCCCeEEEecCC----CCccHHHHHHcCCCCceEEEecccc--cccCc---ceeecHHHHHHHHHHHHHHHHhcc
Confidence 421 111111233321 47888887652 5799987764322 24764 466778888887777777776654
No 35
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.12 E-value=1.2e-09 Score=116.55 Aligned_cols=167 Identities=21% Similarity=0.303 Sum_probs=113.2
Q ss_pred CEEEEEeeccccC----CCCCCCCChhHHHHHHHHHHHHHhc---CCCCCccEEEEEeCCcCCCCcchHHHHhcC-----
Q 002481 180 NAILVSSHIDTVS----AGEGAGDCSSCVAVMLELARVMSQW---AHEFKNAVIFLFNTGEEEGLNGAHSFVTQH----- 247 (917)
Q Consensus 180 ~~VLl~AH~DSv~----~spGA~Dd~sgva~~LE~ar~L~~~---~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h----- 247 (917)
|.|++.|.+||.. .+|||++..+|++++|++++.|.+. ....+++|+|+|+.||..|..||+.|+.+.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999974 3799999999999999999999874 235789999999999999999999998532
Q ss_pred C--------C-cCCceEEEEeecCcCCCCceeeec--CC--C---hHHHHHHHHHccCCCC--cccccccccCCCCCCCC
Q 002481 248 P--------W-STTIRVAVDLEAMGIGGRSALFQA--GP--N---LWAVENFAAVAKYPSG--QIIGQDLFASGVFETAT 309 (917)
Q Consensus 248 ~--------~-~~~v~a~iNLD~~G~gG~~~lfq~--g~--~---~~li~~y~~~a~~p~~--~~l~~e~f~~g~ips~T 309 (917)
+ . .++|..+|.++.+|......++.- +. + ..+.+...+..+.+.. ....+..=....+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 2 1 158999999999998665223331 21 1 2233333332222221 11111111112355555
Q ss_pred chHHhhhcCCCeEEEEeecCC---CCCCCCcCCCcCCCCH
Q 002481 310 DFQVYTEVAGLSGLDFAYTDK---SAVYHTKNDRLDLLKP 346 (917)
Q Consensus 310 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~i~~ 346 (917)
=++-.++..++||+-++-.+. ..+||+.+|+.++|+.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 444344434799998875544 3469999999998876
No 36
>PRK05469 peptidase T; Provisional
Probab=99.12 E-value=9.7e-10 Score=126.52 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCCCCCC------C-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccc
Q 002481 87 LEAMKHVKALTQLGPHAVG------S-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~G------S-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (917)
+.+.+.|++|.+|..-... | .+++++++||.++++++|.+ .++++
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~----------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQ-----DVTLD----------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----eEEEC-----------------------
Confidence 4567889999887432211 1 34578999999999999831 12222
Q ss_pred cccceEEEEEcCCCCCCCCCCEEEEEeeccccCCC---------------------------------------------
Q 002481 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAG--------------------------------------------- 194 (917)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s--------------------------------------------- 194 (917)
...||+++++|+. ..+.+.|++.+|+|+||..
T Consensus 54 -~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 54 -ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred -CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 2358999997741 2345899999999999642
Q ss_pred -CCC----CCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHH
Q 002481 195 -EGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFV 244 (917)
Q Consensus 195 -pGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~ 244 (917)
+|+ .|+++|+|+||.+++.|++.+..++.+|+|+|..+||.| .|++.++
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~ 184 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFD 184 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhh
Confidence 365 999999999999999998865567789999999999998 8999886
No 37
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.11 E-value=8.6e-10 Score=124.52 Aligned_cols=128 Identities=27% Similarity=0.298 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEE
Q 002481 88 EAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVL 167 (917)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~ 167 (917)
|.++.+++|.+|. .-|.++.++.+||.++|+++|. +++.+.. . + .+.+..|+++
T Consensus 1 ~~~~~~~~l~~i~---s~s~~e~~~~~~l~~~l~~~g~------~~~~~~~--~-~--------------~~~~~~~~~~ 54 (361)
T TIGR01883 1 RLKKYFLELIQID---SESGKEKAILTYLKKQITKLGI------PVSLDEV--P-A--------------EVSNDNNLIA 54 (361)
T ss_pred ChHHHHHHHeecC---CCCCcHHHHHHHHHHHHHHcCC------EEEEecc--c-c--------------ccCCCceEEE
Confidence 4678899999873 2344567899999999999983 3333211 0 0 0114579999
Q ss_pred EEcCCCCCCCCCCEEEEEeeccccCC--------------CCCC----CCChhHHHHHHHHHHHHHhcCCCCCccEEEEE
Q 002481 168 RILPKYASEAGENAILVSSHIDTVSA--------------GEGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (917)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (917)
+++|+ .+.+.|++++|+|+||. ++|+ .|+++|+|++|++++.|.+.+ .++++|.|+|
T Consensus 55 ~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~ 129 (361)
T TIGR01883 55 RLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIF 129 (361)
T ss_pred EEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 99774 23478999999999984 3666 799999999999999998764 5678999999
Q ss_pred eCCcCCCCcchHHHHhc
Q 002481 230 NTGEEEGLNGAHSFVTQ 246 (917)
Q Consensus 230 ~~aEE~gl~GS~~f~~~ 246 (917)
+.+||.|..|++.+.++
T Consensus 130 ~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 130 TVKEELGLIGMRLFDES 146 (361)
T ss_pred EcccccCchhHhHhChh
Confidence 99999999999998743
No 38
>PRK13381 peptidase T; Provisional
Probab=99.10 E-value=1.1e-09 Score=125.85 Aligned_cols=126 Identities=17% Similarity=0.287 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCCCC-------CCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002481 88 EAMKHVKALTQLGPHA-------VGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (917)
Q Consensus 88 rA~~~L~~L~~igpr~-------~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (917)
++.+.|.++.+|.... ..+++++++++||.++++++|.+ .+++|
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~~------------------------ 52 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVID------------------------ 52 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEEc------------------------
Confidence 3567788888763222 12445678999999999999841 12211
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCCC----------------------------------------------
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAG---------------------------------------------- 194 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------------------------------- 194 (917)
+..||+++++|+ ....+.|++++|+|+||..
T Consensus 53 ~~~nvi~~~~g~---~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 129 (404)
T PRK13381 53 EHAIVTAKLPGN---TPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFS 129 (404)
T ss_pred CCeEEEEEEecC---CCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeC
Confidence 346999999774 1233789999999999743
Q ss_pred CCC----CCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhc
Q 002481 195 EGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (917)
Q Consensus 195 pGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~ 246 (917)
+|+ .|+++|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 130 rG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 130 DGTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 367 999999999999999998763 457799999999999999999999743
No 39
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.09 E-value=1.4e-09 Score=125.97 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
.+++.+.|++|.+|. .-|.++.++++||.++|+++|. +++....... ......+ .......+.+..||
T Consensus 19 ~~~~~~~l~~li~ip---S~s~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~nl 86 (427)
T PRK06837 19 FDAQVAFTQDLVRFP---STRGAEAPCQDFLARAFRERGY------EVDRWSIDPD-DLKSHPG--AGPVEIDYSGAPNV 86 (427)
T ss_pred hHHHHHHHHHHhccC---CCCCcHHHHHHHHHHHHHHCCC------ceEEecCCHH-Hhhhccc--ccccccccCCCceE
Confidence 457778889998872 2344557899999999999984 3332110000 0000000 00000122357899
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
+++++|+ ..+.+.|++.+|+|+||.. +|+.|++.|++++|.+++.|.+.+..++++
T Consensus 87 ~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~ 163 (427)
T PRK06837 87 VGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAAR 163 (427)
T ss_pred EEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999874 2345789999999999863 599999999999999999999887778899
Q ss_pred EEEEEeCCcCCCCcchHHHHh
Q 002481 225 VIFLFNTGEEEGLNGAHSFVT 245 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~ 245 (917)
|.|+|+.+||.+..|+...+.
T Consensus 164 i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 164 VHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred EEEEEEeccccCCHhHHHHHh
Confidence 999999999988888877663
No 40
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.09 E-value=1.7e-09 Score=124.90 Aligned_cols=156 Identities=24% Similarity=0.232 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
.+++.+.+++|.++ |- -|.++.++.+||.++|+++|. ++++........ .....+......+.+..||
T Consensus 16 ~~~~~~~l~~lv~i-ps--~s~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~nl 83 (422)
T PRK06915 16 EEEAVKLLKRLIQE-KS--VSGDESGAQAIVIEKLRELGL------DLDIWEPSFKKL---KDHPYFVSPRTSFSDSPNI 83 (422)
T ss_pred HHHHHHHHHHHHhC-CC--CCcchHHHHHHHHHHHHhcCC------eeEEeecchhhh---hcccccCCcccccCCCceE
Confidence 46788999999986 32 345567889999999999983 333221000000 0000000000111246899
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
+++++|. .+.+.|++++|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+
T Consensus 84 ia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 159 (422)
T PRK06915 84 VATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGD 159 (422)
T ss_pred EEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999774 23478999999999985 2899999999999999999999877778889
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEee
Q 002481 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD 260 (917)
|.|++..+||.|..|+...+.+ .+ +...++.-|
T Consensus 160 v~~~~~~dEE~g~~G~~~~~~~-~~--~~d~~i~~e 192 (422)
T PRK06915 160 VIFQSVIEEESGGAGTLAAILR-GY--KADGAIIPE 192 (422)
T ss_pred EEEEEecccccCCcchHHHHhc-Cc--CCCEEEECC
Confidence 9999999999988898887743 22 234555444
No 41
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.09 E-value=1.4e-09 Score=122.27 Aligned_cols=134 Identities=28% Similarity=0.305 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhc-ccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKI-KESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~i-g~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (917)
++++.+.+++|.++ |-+ |..+.++.+||.++++++ + +++ +. ...|
T Consensus 6 ~~~~~~~l~~li~i-ps~--s~~e~~~~~~l~~~l~~~~~------~~~--~~-----------------------~~~~ 51 (352)
T PRK13007 6 AADLAELTAALVDI-PSV--SGDEKALADAVEAALRALPH------LEV--IR-----------------------HGNS 51 (352)
T ss_pred HHHHHHHHHHHhcC-CCC--CchHHHHHHHHHHHHHhCcC------ceE--Ee-----------------------cCCe
Confidence 36788999999986 334 445578999999999986 4 222 21 1258
Q ss_pred EEEEEcCCCCCCCCCCEEEEEeeccccCC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEe
Q 002481 165 IVLRILPKYASEAGENAILVSSHIDTVSA--------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFN 230 (917)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~ 230 (917)
+++++.+. . .+.|++++|+|+||. ++|+.|+++|+|++|.+++.|. .++++|.|+|.
T Consensus 52 ~~~~~~~~----~-~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~ 122 (352)
T PRK13007 52 VVARTDLG----R-PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFY 122 (352)
T ss_pred EEEEccCC----C-CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEE
Confidence 99998432 1 246999999999985 3899999999999999999993 36789999999
Q ss_pred CCcCCCC--cchHHHHhcCCCcCCceEEEEeecC
Q 002481 231 TGEEEGL--NGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 231 ~aEE~gl--~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
++||.+. .|+..++.+++...+..++|+.|..
T Consensus 123 ~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 123 DCEEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred ecccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 9999864 5888888666544556788888853
No 42
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.09 E-value=2.2e-09 Score=126.46 Aligned_cols=138 Identities=16% Similarity=0.265 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002481 84 FSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (917)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (917)
...+++++.|++|++| |++.+ .++++++||.++++++| ++++.| ...
T Consensus 7 ~~~~~~~~~l~~Lv~i-ps~S~--~e~~~~~~l~~~~~~~G------~~~~~d------------------------~~g 53 (485)
T PRK15026 7 LSPQPLWDIFAKICSI-PHPSY--HEEQLAEYIVGWAKEKG------FHVERD------------------------QVG 53 (485)
T ss_pred cCHHHHHHHHHHHhCC-CCCCC--CHHHHHHHHHHHHHhCC------CEEEEE------------------------ecC
Confidence 4568899999999997 56544 44689999999999998 344443 236
Q ss_pred eEEEEEcCCCCCCCCCCEEEEEeeccccCCC------------------------CCC---CCChhHHHHHHHHHHHHHh
Q 002481 164 HIVLRILPKYASEAGENAILVSSHIDTVSAG------------------------EGA---GDCSSCVAVMLELARVMSQ 216 (917)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s------------------------pGA---~Dd~sgva~~LE~ar~L~~ 216 (917)
|+++++++.. +....+.|++.+|+|+|+.. +|+ .|+++|+|++|++++ +
T Consensus 54 nvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~---~ 129 (485)
T PRK15026 54 NILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA---D 129 (485)
T ss_pred eEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---h
Confidence 8999886531 11345789999999999741 677 499999999998763 3
Q ss_pred cCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 002481 217 WAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 217 ~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
.+. ++.+|.++|+.+||.|+.||+.+.. . ..+.+++||+|..
T Consensus 130 ~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~-~~~~~~~i~~e~~ 171 (485)
T PRK15026 130 ENV-VHGPLEVLLTMTEEAGMDGAFGLQS--N-WLQADILINTDSE 171 (485)
T ss_pred CCC-CCCCEEEEEEcccccCcHhHHHhhh--c-cCCcCEEEEeCCC
Confidence 333 4678999999999999999999863 2 2467999999976
No 43
>PRK07079 hypothetical protein; Provisional
Probab=99.08 E-value=1.7e-09 Score=126.87 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCH-HHHHHHHHHHH----HHHhcccccCCcceEEEEEEeccCCCcccccccccCcccc
Q 002481 84 FSELEAMKHVKALTQLGPHAVGSD-ALDRALQYVLA----ASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (917)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~-~n~~a~~yL~~----~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (917)
++++++.+.|++|.+|.. +.+.+ ++..+++|+.+ +|+++| +++++ .... .
T Consensus 14 ~~~~~~~~~L~~LV~ipS-vs~~~~~~~~~~~~l~~~~~~~l~~~G------~~~~~--~~~~----------------~ 68 (469)
T PRK07079 14 FDSGAFFADLARRVAYRT-ESQNPDRAPALRAYLTDEIAPALAALG------FTCRI--VDNP----------------V 68 (469)
T ss_pred hccHHHHHHHHHHhccCC-CCCCcccHHHHHHHHHHHHHHHHHHCC------CeEEE--EecC----------------C
Confidence 445688999999999732 22222 23456666654 677666 23332 1110 0
Q ss_pred ccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC----------------------CCCCCCChhHHHHHHHHHHHHHh
Q 002481 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA----------------------GEGAGDCSSCVAVMLELARVMSQ 216 (917)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~----------------------spGA~Dd~sgva~~LE~ar~L~~ 216 (917)
..+..||++++.+. .+.+.|++++|+|+||. ++|+.|+++|+|++|.+++.|.+
T Consensus 69 ~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~ 144 (469)
T PRK07079 69 AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLA 144 (469)
T ss_pred CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 01457999998542 34578999999999973 27999999999999999999875
Q ss_pred c-CCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 217 W-AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 217 ~-~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
. +.+++++|.|++..+||.|..|++.++++++...+..++|+.|.
T Consensus 145 ~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~ 190 (469)
T PRK07079 145 ARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDG 190 (469)
T ss_pred hcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCC
Confidence 3 36788899999999999999999999987643223456666553
No 44
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.08 E-value=1.4e-09 Score=121.63 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCEEEEEeeccc
Q 002481 111 RALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDT 190 (917)
Q Consensus 111 ~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DS 190 (917)
..++|+..+.+.++... ..++.. + +..+++.+|+|+ ++..+.||+++|.|+
T Consensus 49 a~~~Fl~~~a~~l~l~~---~~i~~~----------------------p-~~~~~l~T~~GS---~P~L~silL~SH~DV 99 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTV---QKIESE----------------------P-GKYVLLYTWLGS---DPELPSILLNSHTDV 99 (420)
T ss_pred HHHHHHHHHHHhcCCce---eEEEec----------------------C-ceeEEEEEeeCC---CCCccceeeeccccc
Confidence 78999999999998421 111111 1 356889999996 467899999999999
Q ss_pred cCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCC-CcchHHHHhcCC
Q 002481 191 VSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVTQHP 248 (917)
Q Consensus 191 v~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~g-l~GS~~f~~~h~ 248 (917)
||+ ++||.|+++-++++||++|.|..+|.+|+|+|.+.|..+||.| -.|++.|+. +.
T Consensus 100 VP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~-~~ 178 (420)
T KOG2275|consen 100 VPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAK-TE 178 (420)
T ss_pred cCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhh-hh
Confidence 986 4899999999999999999999999999999999999999986 789999994 44
Q ss_pred CcCCceEEEEeecCc
Q 002481 249 WSTTIRVAVDLEAMG 263 (917)
Q Consensus 249 ~~~~v~a~iNLD~~G 263 (917)
..++....+.||=-|
T Consensus 179 ~~~~l~~~filDEG~ 193 (420)
T KOG2275|consen 179 EFKKLNLGFILDEGG 193 (420)
T ss_pred hhcccceeEEecCCC
Confidence 444555566666443
No 45
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.07 E-value=1.9e-09 Score=121.40 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
.+++.+.|++|.+|.. .|.+++++.+||.++++++|. +++.+ ...|+
T Consensus 9 ~~~~~~~l~~lv~i~s---~s~~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~ 55 (346)
T PRK00466 9 KQKAKELLLDLLSIYT---PSGNETNATKFFEKISNELNL------KLEIL------------------------PDSNS 55 (346)
T ss_pred HHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCC------eEEEe------------------------cCCCc
Confidence 4789999999999843 344557899999999999983 33332 11244
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (917)
++ .|+ +.|++++|+|+||. ++|+.|++.|+|++|++++.|.+.+ .++.|+|..+|
T Consensus 56 ~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dE 122 (346)
T PRK00466 56 FI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADE 122 (346)
T ss_pred Ee--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCc
Confidence 32 231 35999999999985 3899999999999999999998754 35899999999
Q ss_pred CCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 234 EEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 234 E~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
|.|..|++.+++++. +..+++..|..+
T Consensus 123 E~g~~G~~~l~~~~~---~~d~~i~~ep~~ 149 (346)
T PRK00466 123 ESTSIGAKELVSKGF---NFKHIIVGEPSN 149 (346)
T ss_pred ccCCccHHHHHhcCC---CCCEEEEcCCCC
Confidence 999899999996542 345677767554
No 46
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.06 E-value=1.9e-09 Score=122.62 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002481 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (917)
..+.+.|++|.+|. .+.+ .++.++.+||.++|+++|. +++... .. ..+..||+
T Consensus 4 ~~~~~~l~~lv~i~-S~s~-~~~~~~~~~l~~~l~~~G~------~~~~~~--~~-----------------~~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLVAFD-TVSR-DSNLALIEWVRDYLAAHGV------ESELIP--DP-----------------EGDKANLF 56 (385)
T ss_pred hhHHHHHHHHhCCC-CcCC-CccHHHHHHHHHHHHHcCC------eEEEEe--cC-----------------CCCcccEE
Confidence 46788999999973 3333 2224899999999999983 333321 10 01347999
Q ss_pred EEEcCCCCCCCCCCEEEEEeeccccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEE
Q 002481 167 LRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (917)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (917)
+++.++ ..+.|++.+|+|+|+. ++|+.|+++++|++|++++.|.+. +++++|.
T Consensus 57 a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~ 129 (385)
T PRK07522 57 ATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLH 129 (385)
T ss_pred EEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEE
Confidence 998542 2468999999999974 389999999999999999999875 4678999
Q ss_pred EEEeCCcCCCCcchHHHHhcCCC-cCCceEEEEeec
Q 002481 227 FLFNTGEEEGLNGAHSFVTQHPW-STTIRVAVDLEA 261 (917)
Q Consensus 227 Flf~~aEE~gl~GS~~f~~~h~~-~~~v~a~iNLD~ 261 (917)
|+|..+||.|..|++.++++... ..+...+|..|.
T Consensus 130 ~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 130 LAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred EEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 99999999988999999864322 122445555554
No 47
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.05 E-value=2e-09 Score=121.37 Aligned_cols=135 Identities=22% Similarity=0.271 Sum_probs=98.4
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcC
Q 002481 92 HVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (917)
Q Consensus 92 ~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (917)
.|++|.+|. -+.+. ++.++++||.++|+++| ++++.+.. ..+ .+..||++++.+
T Consensus 2 ~l~~lv~i~-S~s~~-~~~~~~~~l~~~l~~~G------~~~~~~~~--~~~----------------~~~~nl~~~~~~ 55 (364)
T TIGR01892 2 ILTKLVAFD-STSFR-PNVDLIDWAQAYLEALG------FSVEVQPF--PDG----------------AEKSNLVAVIGP 55 (364)
T ss_pred hHHHhhCcC-CcCCc-cHHHHHHHHHHHHHHcC------CeEEEEeC--CCC----------------CccccEEEEecC
Confidence 467888863 22222 23589999999999998 34444321 100 035799999854
Q ss_pred CCCCCCCCCEEEEEeeccccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeC
Q 002481 172 KYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNT 231 (917)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~ 231 (917)
+ +.+.|++.+|+|+||. ++|+.|+++|+|++|.+++.|.+. +.+++|.|+|..
T Consensus 56 ~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~ 128 (364)
T TIGR01892 56 S-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTA 128 (364)
T ss_pred C-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEe
Confidence 2 3467999999999975 379999999999999999999874 467899999999
Q ss_pred CcCCCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 232 GEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 232 aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
+||.|..|++.++++... +...++..|.
T Consensus 129 ~EE~g~~G~~~~~~~~~~--~~d~~i~~ep 156 (364)
T TIGR01892 129 DEEVGCTGAPKMIEAGAG--RPRHAIIGEP 156 (364)
T ss_pred ccccCCcCHHHHHHhcCC--CCCEEEECCC
Confidence 999999999999966542 2234444443
No 48
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.05 E-value=1.9e-09 Score=126.44 Aligned_cols=127 Identities=15% Similarity=0.215 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCCCCCC---------CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002481 86 ELEAMKHVKALTQLGPHAVG---------SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~G---------S~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (917)
.+++.+.|++|.+|..-..+ -.++.++.+||.++++++|. +++.
T Consensus 13 ~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~------~~~~--------------------- 65 (466)
T PRK07318 13 KDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGF------KTKN--------------------- 65 (466)
T ss_pred HHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCC------EEEE---------------------
Confidence 46788899999987432211 12346899999999999883 2221
Q ss_pred ccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002481 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQW 217 (917)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~ 217 (917)
..|++++++.. ...+.|++++|+|+||. ++|+.|++.|+|+++.+++.|++.
T Consensus 66 -----~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~ 136 (466)
T PRK07318 66 -----VDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKEL 136 (466)
T ss_pred -----ecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHc
Confidence 12555555431 23367999999999985 389999999999999999999988
Q ss_pred CCCCCccEEEEEeCCcCCCCcchHHHHhcCC
Q 002481 218 AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (917)
Q Consensus 218 ~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~ 248 (917)
+.+++++|.|+|..+||.|..|++.++++++
T Consensus 137 g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 137 GLPLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCCCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 7778889999999999999999999997654
No 49
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.05 E-value=1.9e-09 Score=120.81 Aligned_cols=130 Identities=25% Similarity=0.303 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002481 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (917)
|++.+.+++|.++ |-+ |.++.++.+||.++|+++| ++++.+. . + +..|++
T Consensus 2 ~~~~~~~~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G------~~v~~~~--~--------~-----------~~~~~~ 51 (347)
T PRK08652 2 ERAKELLKQLVKI-PSP--SGQEDEIALHIMEFLESLG------YDVHIES--D--------G-----------EVINIV 51 (347)
T ss_pred hhHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcC------CEEEEEe--c--------C-----------ceeEEE
Confidence 6889999999987 333 3455789999999999998 3444321 0 0 235666
Q ss_pred EEEcCCCCCCCCCCEEEEEeeccccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcC
Q 002481 167 LRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (917)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (917)
+ + +.+.|++.+|+|+||. ++|+.|+++|+|+||++++.|.+. .++.+|.|+|..+||
T Consensus 52 ~---~------~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE 120 (347)
T PRK08652 52 V---N------SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEE 120 (347)
T ss_pred c---C------CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcc
Confidence 5 2 1257999999999985 479999999999999999999863 346799999999999
Q ss_pred CCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 235 EGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 235 ~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
.|..|++.++++++. ..+|+.|.
T Consensus 121 ~g~~G~~~~~~~~~~----d~~i~~ep 143 (347)
T PRK08652 121 EGGRGSALFAERYRP----KMAIVLEP 143 (347)
T ss_pred cCChhHHHHHHhcCC----CEEEEecC
Confidence 988999999965431 46666664
No 50
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.05 E-value=2.2e-09 Score=123.83 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCCCCCC--------CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccc
Q 002481 87 LEAMKHVKALTQLGPHAVG--------SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~G--------S~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (917)
+|+.+.+.++++|.. +.+ +..+++.++||.++|+++|.+ ++++|.
T Consensus 3 ~~~~~~f~~~~~i~s-~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~-----~v~~d~--------------------- 55 (410)
T TIGR01882 3 EELLPRFLTYVKVNT-RSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ-----DAHYDE--------------------- 55 (410)
T ss_pred hHHHHHHHhhEEEec-ccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc-----eEEEcC---------------------
Confidence 688899999988743 222 224457999999999999941 255441
Q ss_pred ccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------------------------------
Q 002481 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------------------------------- 193 (917)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------------------------------- 193 (917)
+..||+++++|.. ....+.|++.||+|||+.
T Consensus 56 --~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 131 (410)
T TIGR01882 56 --KNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLI 131 (410)
T ss_pred --CceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEE
Confidence 3689999998742 112488999999999973
Q ss_pred -CCC----CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHh
Q 002481 194 -GEG----AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 245 (917)
Q Consensus 194 -spG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~ 245 (917)
+.| +.||++|+|+||++++.|++.+..++.+|.|+|..+||.| .|++.+..
T Consensus 132 ~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 132 TTDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred EcCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 112 3799999999999999998753445779999999999987 59988863
No 51
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.04 E-value=7.9e-09 Score=114.86 Aligned_cols=241 Identities=20% Similarity=0.230 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHHHHHc----CCCCCCCCHHH-HHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccc
Q 002481 83 GFSELEAMKHVKALTQ----LGPHAVGSDAL-DRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTL 157 (917)
Q Consensus 83 ~fs~erA~~~L~~L~~----igpr~~GS~~n-~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~ 157 (917)
..+-++..+||..+-+ |..|+..-..+ --...+ ++++++.+ .+++|.+|.... +| ..
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~--~~~~~L~d---g~Y~V~IdS~l~-~G------------~L 117 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSH--NQLDALPD---GEYEVVIDSTLE-DG------------SL 117 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--H--HHHHT--S---SEEEEEEEEEEE-S-------------EE
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCH--HHHhhCCC---CceEEEEeeeec-CC------------ce
Confidence 4677888888877754 33343322221 111111 33344432 346777764321 11 12
Q ss_pred cccccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCC
Q 002481 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGL 237 (917)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl 237 (917)
.|.+ ..++|+ +++-|++++|.++-. -|+||-||+|++.+++|.|++. +.+.+.+|+|-. +.
T Consensus 118 ~ygE-----~~ipG~-----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P----eT 178 (386)
T PF09940_consen 118 TYGE-----FVIPGE-----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP----ET 178 (386)
T ss_dssp EEEE-----EEE--S-----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----TT
T ss_pred eEEE-----EEecCC-----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----cc
Confidence 2222 345663 567899999999864 5999999999999999999984 455999999998 47
Q ss_pred cchHHHHhcCCCc--CCceEEEEeecCcCCCCceeeecCC-ChHHHH-HHHHHccCCCCcccccccccCCCCCCCCchHH
Q 002481 238 NGAHSFVTQHPWS--TTIRVAVDLEAMGIGGRSALFQAGP-NLWAVE-NFAAVAKYPSGQIIGQDLFASGVFETATDFQV 313 (917)
Q Consensus 238 ~GS~~f~~~h~~~--~~v~a~iNLD~~G~gG~~~lfq~g~-~~~li~-~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~ 313 (917)
.||-.|..+|... +++++.++|.++|..|.-. ++.+. ....++ +.+...++-... ...+ ...|.++|.|.
T Consensus 179 IGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~s-yk~Sr~g~~~iDr~~~~vl~~~~~~---~~~~--~F~~~GsDERQ 252 (386)
T PF09940_consen 179 IGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYS-YKRSRRGNTLIDRAAAHVLKHSGPN---FKIY--DFLPRGSDERQ 252 (386)
T ss_dssp HHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EE-EE--TTSSSHHHHHHHHHHHHSSS----EEEE-----S-SSTHHH
T ss_pred HHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcc-eecCCCCCcHHHHHHHHHHHhcCCC---ceEe--cccccCCCcce
Confidence 8999999888653 4599999999999877544 34232 233443 333322221111 0111 24567899999
Q ss_pred hhhcC-CCeEEEEee--cCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 002481 314 YTEVA-GLSGLDFAY--TDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (917)
Q Consensus 314 F~~~~-GIPgld~a~--~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~~ 366 (917)
|..-+ ++|...+.- ++..+-|||..|+++.|+++.|+..-+.+..++.-|-+.
T Consensus 253 fcSPG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 253 FCSPGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp HTSTTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred eecCCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 98721 356555442 233457999999999999999999888888888777654
No 52
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=116.41 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=121.9
Q ss_pred cceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCC----
Q 002481 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGL---- 237 (917)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl---- 237 (917)
..|+|+.= ...++.++++||.|+|. -|+.||-.|++...|+++.|...+ ..+-++.+++||.|+
T Consensus 178 ~y~~Ia~~------~~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVD------GGENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEec------CCCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 45666532 13456899999999998 599999999999999999998753 456778889999876
Q ss_pred -----cchHHHHhcCCCcCCceEEEEeecCcCCCCceeeecCCChHHHHHHHHHccCCCCcccccccccCCCCCCCCchH
Q 002481 238 -----NGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ 312 (917)
Q Consensus 238 -----~GS~~f~~~h~~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~ 312 (917)
.||+.|.++.+-.+++.+.+|+|.+|.+.... .+-|.+++.-.+.-+.... .++. -.|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~lv~----~~~P~L~e~~~~~g~~~ve---spe~--------y~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCLVA----SGAPQLVEHALEAGAVEVE---SPEP--------YCDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccchhh----hcChHHHHHHHHhCCceec---CCCc--------ccchh
Confidence 48999998888788999999999999765321 2346777766654221111 1232 24666
Q ss_pred HhhhcCCCeEEEEeecC---CCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 002481 313 VYTEVAGLSGLDFAYTD---KSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (917)
Q Consensus 313 ~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~ 365 (917)
.+.. +|||.+.+.... -+..|||+.||+...+ ..-+++.++.++++
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~~------n~~t~~d~a~r~v~ 359 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASWD------NAWTAVDAAVRTVT 359 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCchhHH------HHHHHHHHHHHHHh
Confidence 6777 999999987654 3567999999994322 22345566666664
No 53
>PRK07205 hypothetical protein; Provisional
Probab=99.03 E-value=2.9e-09 Score=124.09 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHcCCCCCCCC--------HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002481 85 SELEAMKHVKALTQLGPHAVGS--------DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS--------~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (917)
+.+++.+.|++|.+|.. ..+. ++-.++.+|+.++++++|. +++++.
T Consensus 9 ~~~~~~~~l~~lv~i~S-~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------~~~~~~------------------- 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPS-VLNEGENGTPFGQAIQDVLEATLDLCQGLGF------KTYLDP------------------- 62 (444)
T ss_pred hHHHHHHHHHHHccccc-ccCCCcCCCCCchhHHHHHHHHHHHHHhCCC------EEEEcC-------------------
Confidence 56788899999998732 2221 1225788999999999883 333321
Q ss_pred ccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHH
Q 002481 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMS 215 (917)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~ 215 (917)
...|+++++ |. ..+.|++++|+|+||. ++|+.|++.|+|++|++++.|.
T Consensus 63 ----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~ 132 (444)
T PRK07205 63 ----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL 132 (444)
T ss_pred ----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH
Confidence 112455554 32 2367999999999985 2899999999999999999999
Q ss_pred hcCCCCCccEEEEEeCCcCCCCcchHHHHhcC
Q 002481 216 QWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (917)
Q Consensus 216 ~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h 247 (917)
+.+.+++++|.|+|.++||.|..|++.|+.+.
T Consensus 133 ~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 133 DAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred HcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 88878889999999999999999999998644
No 54
>PRK06156 hypothetical protein; Provisional
Probab=99.01 E-value=9.1e-09 Score=122.41 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHcCCCC-CCC----C-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccc
Q 002481 85 SELEAMKHVKALTQLGPH-AVG----S-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr-~~G----S-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (917)
..+++.+.|++|.+|..- +.+ . ++.....+||.+++++.|. +++ .
T Consensus 44 ~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~------~~~--~--------------------- 94 (520)
T PRK06156 44 YGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGL------DYR--N--------------------- 94 (520)
T ss_pred hHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCC------eEE--e---------------------
Confidence 456888899999987421 111 1 1223567999999999883 221 1
Q ss_pred ccccceEE-EEEcCCCCCCCCCCEEEEEeeccccCC-------------------------CCCCCCChhHHHHHHHHHH
Q 002481 159 YSDLNHIV-LRILPKYASEAGENAILVSSHIDTVSA-------------------------GEGAGDCSSCVAVMLELAR 212 (917)
Q Consensus 159 Y~~~~NVi-~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------------spGA~Dd~sgva~~LE~ar 212 (917)
...||+ ++++|+ ..+.|++++|+|+||. ++|+.|++.|+++++.+++
T Consensus 95 --~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~ 167 (520)
T PRK06156 95 --VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMK 167 (520)
T ss_pred --cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHH
Confidence 112444 676553 2368999999999974 2689999999999999999
Q ss_pred HHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeec
Q 002481 213 VMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 213 ~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
.|.+.+.+++++|.|+|..+||.|..|++.++.++. ....++|+|+
T Consensus 168 ~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 168 AIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 998877778889999999999999999999996543 3356677775
No 55
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.98 E-value=5.6e-09 Score=118.47 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEE
Q 002481 88 EAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVL 167 (917)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~ 167 (917)
++.+.+++|.++ +.-|..++++++||.++|+++|. +++.. .. .+..|+++
T Consensus 3 ~~~~~l~~Lv~i---ps~s~~e~~~~~~l~~~l~~~G~------~~~~~--~~-------------------~~~~n~~~ 52 (375)
T PRK13009 3 DVLELAQDLIRR---PSVTPDDAGCQDLLAERLEALGF------TCERM--DF-------------------GDVKNLWA 52 (375)
T ss_pred hHHHHHHHHhCC---CCCCCchhhHHHHHHHHHHHcCC------eEEEe--cc-------------------CCCcEEEE
Confidence 466788888885 23345567899999999999983 33321 10 13479999
Q ss_pred EEcCCCCCCCCCCEEEEEeeccccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCccEE
Q 002481 168 RILPKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (917)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (917)
++ |. +.+.|++++|+|+||.+ +|+.|+++|++++|++++.+.+.+.+++++|+
T Consensus 53 ~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 126 (375)
T PRK13009 53 RR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIA 126 (375)
T ss_pred Ee-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 87 42 34789999999999852 68999999999999999999887777889999
Q ss_pred EEEeCCcCCCC-cchHHHHhcCCC-cCCceEEEEee
Q 002481 227 FLFNTGEEEGL-NGAHSFVTQHPW-STTIRVAVDLE 260 (917)
Q Consensus 227 Flf~~aEE~gl-~GS~~f~~~h~~-~~~v~a~iNLD 260 (917)
|++..+||.+. .|++.+++.... ......++..|
T Consensus 127 ~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 162 (375)
T PRK13009 127 FLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGE 162 (375)
T ss_pred EEEEeecccccccCHHHHHHHHHHcCcCCCEEEEcC
Confidence 99999999854 699988743211 12345555555
No 56
>PRK05111 acetylornithine deacetylase; Provisional
Probab=98.98 E-value=8.3e-09 Score=117.49 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCH-----HHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcccccc
Q 002481 86 ELEAMKHVKALTQLGPHAVGSD-----ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~-----~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (917)
.+++.+.+++|.++.. ..+.+ ++.++.+||.++|+++| ++++++.. . + ..
T Consensus 4 ~~~~i~~l~~lv~i~s-~s~~e~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~~--~-~---------------~~ 58 (383)
T PRK05111 4 LPSFIEMYRALIATPS-ISATDPALDQSNRAVIDLLAGWFEDLG------FNVEIQPV--P-G---------------TR 58 (383)
T ss_pred chHHHHHHHHHhCcCC-cCCCCcccccchHHHHHHHHHHHHHCC------CeEEEEec--C-C---------------CC
Confidence 3478899999998732 22221 23579999999999998 34443321 0 0 01
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 220 (917)
+..|+++++ |+ ..+.|++.+|+|+||. ++|+.|+++++|++|++++.|.+. .
T Consensus 59 ~~~nvia~~-g~-----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~ 130 (383)
T PRK05111 59 GKFNLLASL-GS-----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--K 130 (383)
T ss_pred CCceEEEEe-CC-----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--C
Confidence 347999998 43 1236999999999973 389999999999999999999863 4
Q ss_pred CCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEee
Q 002481 221 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (917)
Q Consensus 221 p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD 260 (917)
++++|+|+|.++||.|..|++.++++... ....++.-|
T Consensus 131 ~~~~i~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~e 168 (383)
T PRK05111 131 LKKPLYILATADEETSMAGARAFAEATAI--RPDCAIIGE 168 (383)
T ss_pred CCCCeEEEEEeccccCcccHHHHHhcCCC--CCCEEEEcC
Confidence 56889999999999998999999965432 223444444
No 57
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.98 E-value=2.8e-09 Score=108.52 Aligned_cols=164 Identities=23% Similarity=0.314 Sum_probs=113.5
Q ss_pred EEEeeccccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCc-chHH
Q 002481 183 LVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN-GAHS 242 (917)
Q Consensus 183 Ll~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~-GS~~ 242 (917)
|+.+|+|+|+. ++|+.|++.++++++.+++.|++.+.+++++|+|+|..+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999992 589999999999999999999987788999999999999999998 9999
Q ss_pred HHhcCC-CcCCceEEEEeecCcCCCCceeeecCCChHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHhhh--cCC
Q 002481 243 FVTQHP-WSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE--VAG 319 (917)
Q Consensus 243 f~~~h~-~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~--~~G 319 (917)
++++.. ...+....+..|..+.+.-. ...++.+++...++.+...+... .....+..||...|.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP-----EPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE-----EEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc-----cccceeccccchhhhhhhccc
Confidence 997631 12235666666654433211 22356566666665433333111 1113457899999995 478
Q ss_pred CeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHH
Q 002481 320 LSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFL 360 (917)
Q Consensus 320 IPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv 360 (917)
+|.+-+.... ...|++.. +++.+.+....+.+..++
T Consensus 152 ~~~i~~G~~~--~~~H~~~E---~i~~~~l~~~~~~~~~~l 187 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPDE---YIDIEDLVKGAKIYAALL 187 (189)
T ss_dssp EEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCCc---EecHHHHHHHHHHHHHHH
Confidence 8888765444 56788654 455777777666666554
No 58
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.97 E-value=1e-08 Score=117.21 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccc
Q 002481 85 SELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (917)
..+++.+.|++|.+|.. +.++ .++.++++||.++++++|. +++++. ...+. . .. ......
T Consensus 4 ~~~~~~~~l~~lv~i~S-~s~~~~~~~~~a~~l~~~l~~~G~------~~~~~~--~~~~~--~------~~--~~~~~~ 64 (394)
T PRK08651 4 MMFDIVEFLKDLIKIPT-VNPPGENYEEIAEFLRDTLEELGF------STEIIE--VPNEY--V------KK--HDGPRP 64 (394)
T ss_pred hHHHHHHHHHHHhcCCc-cCCCCcCHHHHHHHHHHHHHHcCC------eEEEEe--cCccc--c------cc--ccCCcc
Confidence 34788999999999843 2212 3346899999999999983 344332 11000 0 00 001246
Q ss_pred eEEEEEcCCCCCCCCCCEEEEEeeccccCCC--------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCc
Q 002481 164 HIVLRILPKYASEAGENAILVSSHIDTVSAG--------------------EGAGDCSSCVAVMLELARVMSQWAHEFKN 223 (917)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s--------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~ 223 (917)
|++++. +. .++.|++.+|+|+||.. +|+.|++.|++++|++++.|.+.+ ++
T Consensus 65 ~~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~ 135 (394)
T PRK08651 65 NLIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DG 135 (394)
T ss_pred eEEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CC
Confidence 788764 32 23789999999999752 688999999999999999998754 78
Q ss_pred cEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 002481 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 224 ~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
+|.|+|..+||.|..|++.++++... +...++..|..|
T Consensus 136 ~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 136 NIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 99999999999988999999965432 245666666544
No 59
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.97 E-value=5e-08 Score=110.09 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=88.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcC--------CCCc
Q 002481 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI--------GGRS 268 (917)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~--------gG~~ 268 (917)
+.||++||+++++++|.|.+.+.+++.+|+|+|+..||.| .|+.. ....+...+|.+|.... .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~-----~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASH-----ALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchh-----cccHhhhccEEEEecccCCCCCcCCCCce
Confidence 5899999999999999999876678899999999999999 56321 11123334466664321 1333
Q ss_pred eeee-cC-C-ChHHHHHHHHHcc---CCCCcccccccccCCCCCCCCchHHhhh-cCCCeEEEEeecCCCCCCCCcCCCc
Q 002481 269 ALFQ-AG-P-NLWAVENFAAVAK---YPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRL 341 (917)
Q Consensus 269 ~lfq-~g-~-~~~li~~y~~~a~---~p~~~~l~~e~f~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~ 341 (917)
+... .+ . |+.+.+...+.|+ -|+. .+++.. .+||-..+.. -.|+|...++.- .+| -|| .
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q----~~~~~~----~gtDa~~~~~~~~Gi~t~~i~iP-~Ry-~Hs----~ 320 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQDHGIPHR----RDVFRY----YRSDAASAVEAGHDIRTALVTFG-LDA-SHG----Y 320 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCcE----EEecCC----CCChHHHHHHcCCCCCEEEeecc-ccc-hhh----h
Confidence 3122 22 2 6777776665542 2332 233321 2566555543 268998877532 222 476 6
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 002481 342 DLLKPGSLQHLGENMLDFL 360 (917)
Q Consensus 342 d~i~~~sLq~~g~~vl~lv 360 (917)
+.++.+.++++.+.+.+++
T Consensus 321 e~~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 321 ERTHIDALEALANLLVAYA 339 (343)
T ss_pred hhccHHHHHHHHHHHHHHh
Confidence 7777888877666554443
No 60
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=98.95 E-value=2.5e-08 Score=110.98 Aligned_cols=196 Identities=16% Similarity=0.228 Sum_probs=133.2
Q ss_pred ccceEEEEEc-CCC--CCCCCCCEEEEEeeccccCC----CCCCCCChhHHHHHHHHHHHHHhc----CCCCCccEEEEE
Q 002481 161 DLNHIVLRIL-PKY--ASEAGENAILVSSHIDTVSA----GEGAGDCSSCVAVMLELARVMSQW----AHEFKNAVIFLF 229 (917)
Q Consensus 161 ~~~NVi~~i~-g~~--~~~~~~~~VLl~AH~DSv~~----spGA~Dd~sgva~~LE~ar~L~~~----~~~p~~~I~Flf 229 (917)
.+.||.+++. |-. .+++..|.|++.||||+... ++||+-||+|++++||++|.+++. ....++++.|+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 7899999998 321 11345799999999999865 578999999999999999999873 245689999999
Q ss_pred eCCcCCCCcchHHHHhcCC--CcCCceEEEEeecCcCCCCce-eeecCC--ChHHHHH----HHHHccCCCCcccccccc
Q 002481 230 NTGEEEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSA-LFQAGP--NLWAVEN----FAAVAKYPSGQIIGQDLF 300 (917)
Q Consensus 230 ~~aEE~gl~GS~~f~~~h~--~~~~v~a~iNLD~~G~gG~~~-lfq~g~--~~~li~~----y~~~a~~p~~~~l~~e~f 300 (917)
.+|.-...+|++.|.+-.. .++++..+|+||++|.+..+. |..+-| +...+.. +...+++..-.+.. .-
T Consensus 272 t~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~--kh 349 (555)
T KOG2526|consen 272 TAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVT--KH 349 (555)
T ss_pred ccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEE--Ee
Confidence 9999999999999996332 247999999999999985444 333322 2233333 33333332211100 00
Q ss_pred cCCCCC-C----CCchHHhhhcCCCeEEEEeecCC--CCCCCCcC-CCcCCCCHHHHHHHHHHHHHHHH
Q 002481 301 ASGVFE-T----ATDFQVYTEVAGLSGLDFAYTDK--SAVYHTKN-DRLDLLKPGSLQHLGENMLDFLL 361 (917)
Q Consensus 301 ~~g~ip-s----~TD~~~F~~~~GIPgld~a~~~~--~~~YHT~~-Dt~d~i~~~sLq~~g~~vl~lv~ 361 (917)
+ .|. . .=.|.-|.. ..+|+..+..... ...-.+.. |+...++.++|-+..+.+.+.+.
T Consensus 350 k--kInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla 415 (555)
T KOG2526|consen 350 K--KINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALA 415 (555)
T ss_pred e--eEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHH
Confidence 0 011 0 124667775 7899999886533 23344555 99999999988866665555443
No 61
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.94 E-value=1.1e-08 Score=117.78 Aligned_cols=144 Identities=21% Similarity=0.240 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 87 LEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS-~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
+++.+.|++|.++. .-| .++.++++|+.+++++++. .++.+.... . . +..|+
T Consensus 13 ~~~~~~l~~lv~~~---s~s~~~~~~~~~~l~~~l~~~g~------~~~~~~~~~--------------~--~--~~~n~ 65 (409)
T COG0624 13 DDILELLKELVRIP---SVSAGEEAEAAELLAEWLEELGF------EVEEDEVGP--------------G--P--GRPNL 65 (409)
T ss_pred HHHHHHHHHHhcCC---CCCcccchHHHHHHHHHHHHcCC------ceEEeecCC--------------C--C--CceEE
Confidence 45567888888763 333 5667999999999999983 344432110 0 0 35699
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
++++.+. .+++.|++++|+|+||.+ +|+.|++.++++++.+++.+.+.+..++.+
T Consensus 66 ~~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~ 141 (409)
T COG0624 66 VARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGD 141 (409)
T ss_pred EEEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999874 233899999999999873 799999999999999999999977788899
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCCC--cCCceEEEEeec
Q 002481 225 VIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEA 261 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~~h~~--~~~v~a~iNLD~ 261 (917)
|.+++.++||.|..|...+..++.. ..+..+.|..|.
T Consensus 142 v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 142 VRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 9999999999999999999876642 345677788776
No 62
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.94 E-value=7.2e-08 Score=109.00 Aligned_cols=149 Identities=20% Similarity=0.186 Sum_probs=97.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcCC-----------
Q 002481 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIG----------- 265 (917)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~g----------- 265 (917)
|-||..||++++|++|.+++. +++.+++++|+.-||.|+.||+.-+.+. +...+|.+|..-++
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i----~pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKF----NPDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhC----CCCEEEEEecCCcCCCCCCCccccC
Confidence 889999999999999999863 5788999999999999999999765322 22467777754332
Q ss_pred -CCceeee-cCC--ChHHHHHHHHHccCCCCcccccccccCCCCCCCCchH--HhhhcCCCeEEEEeecCCCCCCCCcCC
Q 002481 266 -GRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ--VYTEVAGLSGLDFAYTDKSAVYHTKND 339 (917)
Q Consensus 266 -G~~~lfq-~g~--~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT~~D 339 (917)
|+.+.+. .++ |+.+.+...+.|+. .+-. .|-.. + ..+||-. .+.. .|+|.+.++-- .+ +-||+.
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~I~-~Q~~~-~---~gGtDa~~~~~~~-~Gvpt~~i~ip-~R-y~Hs~~- 319 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEE-AGIK-YQYYV-A---KGGTDAGAAHLKN-SGVPSTTIGVC-AR-YIHSHQ- 319 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHH-cCCC-cEEec-C---CCCchHHHHHHhC-CCCcEEEEccC-cc-cccChh-
Confidence 4443232 233 67777776665432 1110 11111 1 1245655 6665 79999887532 22 258865
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHH
Q 002481 340 RLDLLKPGSLQHLGENMLDFLLQT 363 (917)
Q Consensus 340 t~d~i~~~sLq~~g~~vl~lv~~l 363 (917)
+.++.+.+.++.+.+.+++..+
T Consensus 320 --e~i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 320 --TLYSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred --heeeHHHHHHHHHHHHHHHHhc
Confidence 5557788888888777777664
No 63
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.94 E-value=8.1e-09 Score=121.21 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCCCCC---------CCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccc
Q 002481 87 LEAMKHVKALTQLGPHAV---------GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTL 157 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~---------GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~ 157 (917)
+++.+.|++|.+|..-.. ...+..++.+|+++.++++|. +++..
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~------~~~~~--------------------- 65 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGF------TTKNF--------------------- 65 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCC------eEEEe---------------------
Confidence 567788999988632210 123446799999999999983 33321
Q ss_pred cccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcC
Q 002481 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWA 218 (917)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~ 218 (917)
.|+++++.+. .+++.|++.+|+|+||. ++|+.||+.|++++|.+++.|++.+
T Consensus 66 -----~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~ 136 (466)
T TIGR01886 66 -----DNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG 136 (466)
T ss_pred -----cCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC
Confidence 1222222221 23468999999999975 4899999999999999999999888
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhcCC
Q 002481 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (917)
Q Consensus 219 ~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~ 248 (917)
.+++++|+|++..+||.|..|++.+++++.
T Consensus 137 ~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 137 LPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 888999999999999999999999997654
No 64
>PRK08554 peptidase; Reviewed
Probab=98.93 E-value=1.8e-08 Score=117.46 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCCCCCC---CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002481 88 EAMKHVKALTQLGPHAVG---SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (917)
Q Consensus 88 rA~~~L~~L~~igpr~~G---S~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (917)
++.+.|++|.+|.....+ ..+..++.+|+.++++++|. +++.. .. .+..|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~-------------------~~~~~ 54 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGI------ESELI--EK-------------------DGYYA 54 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCC------eEEEE--ec-------------------CCceE
Confidence 457788899887432111 12246899999999999983 33321 10 02368
Q ss_pred EEEEEcCCCCCCCCCCEEEEEeeccccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 165 IVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
+++++ |. .++.|++.+|+|+||. ++|+.|+++|+|++|.+++.|.+. .++++
T Consensus 55 l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~ 126 (438)
T PRK08554 55 VYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGK 126 (438)
T ss_pred EEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCC
Confidence 88886 32 2357999999999975 289999999999999999999863 36788
Q ss_pred EEEEEeCCcCCCCcchHHHHhcCC-CcCCceEEEEeecCc
Q 002481 225 VIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAVDLEAMG 263 (917)
Q Consensus 225 I~Flf~~aEE~gl~GS~~f~~~h~-~~~~v~a~iNLD~~G 263 (917)
|.|+|+++||.|..++..++++.. ......++|+.|..+
T Consensus 127 i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 127 VIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999999998877777664332 224568899999755
No 65
>PRK13004 peptidase; Reviewed
Probab=98.92 E-value=1.9e-08 Score=115.64 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
.+++.+.+++|.++ | .-|.++.++++||.++++++|.+ ..+++ ...|+
T Consensus 14 ~~~~~~~l~~lv~i-p--s~s~~e~~~a~~l~~~l~~~G~~-----~~~~~------------------------~~~n~ 61 (399)
T PRK13004 14 KADMTRFLRDLIRI-P--SESGDEKRVVKRIKEEMEKVGFD-----KVEID------------------------PMGNV 61 (399)
T ss_pred HHHHHHHHHHHhcC-C--CCCCchHHHHHHHHHHHHHcCCc-----EEEEc------------------------CCCeE
Confidence 36788899999986 3 23345568999999999999831 01111 23588
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
++++.+. .+.|++.+|+|+|+. ++|+.||++|++++|.+++.|.+.+..++.+
T Consensus 62 ~a~~~~~------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 135 (399)
T PRK13004 62 LGYIGHG------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYT 135 (399)
T ss_pred EEEECCC------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCe
Confidence 9988542 268999999999985 2589999999999999999999877778899
Q ss_pred EEEEEeCCcCC-CCcchHHHHhcCCCcCCceEEEEeec
Q 002481 225 VIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAVDLEA 261 (917)
Q Consensus 225 I~Flf~~aEE~-gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (917)
|.|+|..+||. +..|++.++++... ....++..|.
T Consensus 136 i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~ 171 (399)
T PRK13004 136 LYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEP 171 (399)
T ss_pred EEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccC
Confidence 99999999996 45678888754221 2345555553
No 66
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.90 E-value=1.2e-08 Score=114.25 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=94.4
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcC
Q 002481 92 HVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (917)
Q Consensus 92 ~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (917)
.|++|.++ |-+. ..++++++||.++|+++|. +++.+ ...|+++.. +
T Consensus 2 ~l~~lv~i-~s~s--~~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~~~~~-~ 47 (336)
T TIGR01902 2 LLKDLLEI-YSPS--GKEANAAKFLEEISKDLGL------KLIID------------------------DAGNFILGK-G 47 (336)
T ss_pred hHHHHhcC-CCCC--cchHHHHHHHHHHHHHcCC------EEEEC------------------------CCCcEEEEe-C
Confidence 46788876 3333 3457899999999999983 33211 224777754 2
Q ss_pred CCCCCCCCCEEEEEeeccccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcc
Q 002481 172 KYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNG 239 (917)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~G 239 (917)
.+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+. ..+|.|++..+||.|..|
T Consensus 48 -----~~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G 118 (336)
T TIGR01902 48 -----DGHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKG 118 (336)
T ss_pred -----CCCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCcc
Confidence 13478999999999974 489999999999999999999763 358999999999999999
Q ss_pred hHHHHhcCCCcCCceEEEEeecCc
Q 002481 240 AHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 240 S~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
++.+++++.. .++|..|..+
T Consensus 119 ~~~~~~~~~~----~~~ii~ept~ 138 (336)
T TIGR01902 119 AREVIDKNYP----FYVIVGEPSG 138 (336)
T ss_pred HHHHHhhcCC----CEEEEecCCC
Confidence 9999966432 2667777654
No 67
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.89 E-value=1.9e-08 Score=114.75 Aligned_cols=135 Identities=24% Similarity=0.229 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcCC
Q 002481 93 VKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPK 172 (917)
Q Consensus 93 L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~ 172 (917)
|++|.+|. -+ |.++.++.+||.++|++++.. .++++. ...||++++.+.
T Consensus 2 l~~Lv~ip-S~--s~~e~~~~~~i~~~l~~~g~~-----~~~~~~-----------------------~~~nvva~~~~~ 50 (373)
T TIGR01900 2 LQQIMDIF-SP--SDHEGPIADEIEAALNNLELE-----GLEVFR-----------------------FGDNVLARTDFG 50 (373)
T ss_pred hHHHhCCC-CC--CchHHHHHHHHHHHHhhcccc-----CceEEE-----------------------ECCEEEEecCCC
Confidence 56788762 22 344568999999999988631 122221 013899987431
Q ss_pred CCCCCCCCEEEEEeeccccCC-------------------------------CCCCCCChhHHHHHHHHHHHHHh--cCC
Q 002481 173 YASEAGENAILVSSHIDTVSA-------------------------------GEGAGDCSSCVAVMLELARVMSQ--WAH 219 (917)
Q Consensus 173 ~~~~~~~~~VLl~AH~DSv~~-------------------------------spGA~Dd~sgva~~LE~ar~L~~--~~~ 219 (917)
+.+.|++++|+|+||. ++|+.|+++|+|+||.+++.|.+ .+.
T Consensus 51 -----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~ 125 (373)
T TIGR01900 51 -----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET 125 (373)
T ss_pred -----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc
Confidence 2467999999999952 27899999999999999999954 344
Q ss_pred CCCccEEEEEeCCcCCCC--cchHHHHhcCCCcCCceEEEEeecCc
Q 002481 220 EFKNAVIFLFNTGEEEGL--NGAHSFVTQHPWSTTIRVAVDLEAMG 263 (917)
Q Consensus 220 ~p~~~I~Flf~~aEE~gl--~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (917)
.++.+|.|+|..+||.+. .|++.++++++...+..++|..|..+
T Consensus 126 ~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~ 171 (373)
T TIGR01900 126 ELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPTG 171 (373)
T ss_pred CCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCCC
Confidence 678899999999999863 69999987654333456777776443
No 68
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.88 E-value=2.1e-08 Score=113.77 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEE
Q 002481 90 MKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRI 169 (917)
Q Consensus 90 ~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i 169 (917)
.+.|++|.++ +..|.++.++++||.++|+++|. +++... . .+..|++++.
T Consensus 2 ~~~l~~lv~i---ps~s~~e~~~~~~i~~~l~~~G~------~~~~~~--~-------------------~~~~~~~~~~ 51 (370)
T TIGR01246 2 TELAKELISR---PSVTPNDAGCQDIIAERLEKLGF------EIEWMH--F-------------------GDTKNLWATR 51 (370)
T ss_pred hHHHHHHhcC---CCCCcchHHHHHHHHHHHHHCCC------EEEEEe--c-------------------CCCceEEEEe
Confidence 3567788875 23345567899999999999983 343321 0 0236889875
Q ss_pred cCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEE
Q 002481 170 LPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFL 228 (917)
Q Consensus 170 ~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Fl 228 (917)
|. ..+.|++.+|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|+|+
T Consensus 52 -g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~ 125 (370)
T TIGR01246 52 -GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLL 125 (370)
T ss_pred -cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 31 3478999999999975 26889999999999999999988766778899999
Q ss_pred EeCCcCCCC-cchHHHHhcCCC-cCCceEEEEee
Q 002481 229 FNTGEEEGL-NGAHSFVTQHPW-STTIRVAVDLE 260 (917)
Q Consensus 229 f~~aEE~gl-~GS~~f~~~h~~-~~~v~a~iNLD 260 (917)
|..+||.+. .|++.+++.... ......++..|
T Consensus 126 ~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 159 (370)
T TIGR01246 126 ITSDEEGTAIDGTKKVVETLMARDELIDYCIVGE 159 (370)
T ss_pred EEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcC
Confidence 999999864 699988742211 12345555545
No 69
>PRK09961 exoaminopeptidase; Provisional
Probab=98.88 E-value=1.1e-07 Score=107.56 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=97.3
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcC------------
Q 002481 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI------------ 264 (917)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~------------ 264 (917)
|-||.+||++++|++|.+++. ++..+++|+|+..||.|+.||+.-..+. +-..+|.+|.+-.
T Consensus 164 alDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~i----~pd~~I~vDv~~~~d~~~~~~~~~~ 237 (344)
T PRK09961 164 AFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRAV----SPDVAIVLDTACWAKNFDYGAANHR 237 (344)
T ss_pred echhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhcc----CCCEEEEEeccCCCCCCCCCCCccc
Confidence 899999999999999999753 5689999999999999999999876432 2345777775432
Q ss_pred ---CCCceeee-cCC--ChHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHhhhc-CCCeEEEEeecCCCCCCCCc
Q 002481 265 ---GGRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHTK 337 (917)
Q Consensus 265 ---gG~~~lfq-~g~--~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~ 337 (917)
+|+.+-+. .++ |+.+.+...+.++.-. .....+.+. ..+||-..|... .|+|.+.+..- .. +-||+
T Consensus 238 ~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~-Ip~Q~~~~~----ggGTDa~~~~~~~~Giptv~ig~p-~r-y~Hs~ 310 (344)
T PRK09961 238 QIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIG-IPLQADMFS----NGGTDGGAVHLTGTGVPTVVMGPA-TR-HGHCA 310 (344)
T ss_pred ccCCCceEEEccCCcCCCHHHHHHHHHHHHHcC-CCcEEEecC----CCcchHHHHHHhCCCCCEEEechh-hh-cccCh
Confidence 22222122 122 6777776666543211 111111121 236888876542 68999988653 22 34885
Q ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHH
Q 002481 338 NDRLDLLKPGSLQHLGENMLDFLLQT 363 (917)
Q Consensus 338 ~Dt~d~i~~~sLq~~g~~vl~lv~~l 363 (917)
. |.++.+.+.++.+.+.+++..+
T Consensus 311 ~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 311 A---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred h---heEEHHHHHHHHHHHHHHHHHc
Confidence 4 5666777777777666666444
No 70
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.83 E-value=4.7e-08 Score=110.83 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=97.9
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEc
Q 002481 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (917)
Q Consensus 91 ~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (917)
+.+++|.++ |.+.| .+.++++||.++|+++|. +++.+ . ....|+++++.
T Consensus 3 ~~~~~L~~i-ps~s~--~E~~~a~~l~~~l~~~g~------~~~~~--~--------------------~~~~~vva~~~ 51 (363)
T TIGR01891 3 DIRRHLHEH-PELSF--EEFKTSSLIAEALESLGI------EVRRG--V--------------------GGATGVVATIG 51 (363)
T ss_pred HHHHHHhcC-CCCCC--chHHHHHHHHHHHHHcCC------ceEec--C--------------------CCCcEEEEEEe
Confidence 567888886 55554 457899999999999983 33321 0 03478999986
Q ss_pred CCCCCCCCCCEEEEEeeccccCCC-----------------CCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCc
Q 002481 171 PKYASEAGENAILVSSHIDTVSAG-----------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (917)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~s-----------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (917)
++ .+.+.|++++|+|+||.. +|+ ..++|+++.+++.|.+.+.+++++|.|+|..+|
T Consensus 52 ~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 52 GG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 63 234789999999999841 233 367899999999998766667889999999999
Q ss_pred CCCCcchHHHHhcCCCcCCceEEEEeecC
Q 002481 234 EEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 234 E~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
|.+ .|++.++++. +.+++..+++.|..
T Consensus 125 E~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 125 EGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred cCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 986 7999998553 34566778887754
No 71
>PRK09864 putative peptidase; Provisional
Probab=98.83 E-value=2.5e-07 Score=104.59 Aligned_cols=146 Identities=21% Similarity=0.204 Sum_probs=95.2
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecCcC------------
Q 002481 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI------------ 264 (917)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~------------ 264 (917)
|-||..||++++|++|.+++ ++.+++|+|+.-||.|+.||+.-+.+.+ . ..+|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~--P--DiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK--P--DVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC--C--CEEEEEecccCCCCCCCcccccc
Confidence 89999999999999999964 7799999999999999999998764332 2 34677774421
Q ss_pred ----CCCce-eeecCC--ChHHHHHHHHHcc---CCCCcccccccccCCCCCCCCchHHhhhc-CCCeEEEEeecCCCCC
Q 002481 265 ----GGRSA-LFQAGP--NLWAVENFAAVAK---YPSGQIIGQDLFASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAV 333 (917)
Q Consensus 265 ----gG~~~-lfq~g~--~~~li~~y~~~a~---~p~~~~l~~e~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~ 333 (917)
+|+.+ .+..++ |+.+.+...+.|+ -|+- .+.... .+||-..+... .|+|...++. ..+|
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q----~~~~~~----ggTDa~~i~~~~~Gvpt~~isi-P~RY- 314 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQ----FSTMKT----GATDGGRYNVMGGGRPVVALCL-PTRY- 314 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCce----EEEcCC----CCchHHHHHHhCCCCcEEEEee-ccCc-
Confidence 23333 222233 6777777666542 2332 122221 35666655432 7899987753 2332
Q ss_pred CCCcCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 002481 334 YHTKNDRLDLLKPGSLQHLGENMLDFLLQT 363 (917)
Q Consensus 334 YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~l 363 (917)
-||+.- .++.+.++++.+.+.+++..+
T Consensus 315 ~Hs~~e---~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 315 LHANSG---MISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CCCcce---EeEHHHHHHHHHHHHHHHHhc
Confidence 588754 455667777777666666554
No 72
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.81 E-value=4.3e-08 Score=114.58 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCCCCC-----C-----CHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCcc
Q 002481 87 LEAMKHVKALTQLGPHAV-----G-----SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~-----G-----S~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (917)
+.+.+.|++|.+|.. +. + .++..++.+|+.++++++|. +++ .
T Consensus 2 ~~~i~ll~~Lv~ipS-~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~--~------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDS-VEDLEEAKEGAPFGEGPKKALDKFLELAKRDGF------TTE--N------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCc------eEE--E-------------------
Confidence 356788888888632 11 1 12346899999999999883 222 1
Q ss_pred ccccccceEEEEEcCCCCCCCCCCEEEEEeeccccCC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002481 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQW 217 (917)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~ 217 (917)
..|++++.... ...+.|++++|+|+||. ++|+.|++.|+++++++++.|.+.
T Consensus 54 -----~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~ 124 (447)
T TIGR01887 54 -----VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKEL 124 (447)
T ss_pred -----ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHc
Confidence 11333332211 12357999999999974 389999999999999999999987
Q ss_pred CCCCCccEEEEEeCCcCCCCcchHHHHhc
Q 002481 218 AHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (917)
Q Consensus 218 ~~~p~~~I~Flf~~aEE~gl~GS~~f~~~ 246 (917)
+.+++++|.|+|..+||.|+.|++.++.+
T Consensus 125 ~~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 125 GLKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 77788999999999999999999999854
No 73
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.73 E-value=1.4e-07 Score=108.13 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceE
Q 002481 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (917)
.+++.+.+++|.++ |-+. ..+.++.+||.++++++|.+ .++++ ...|+
T Consensus 12 ~~~~~~~~~~lv~i-~s~s--~~e~~~~~~l~~~l~~~G~~-----~~~~~------------------------~~~n~ 59 (395)
T TIGR03320 12 RGDMIRFLRDLVAI-PSES--GDEKRVAERIKEEMEKLGFD-----KVEID------------------------PMGNV 59 (395)
T ss_pred HHHHHHHHHHHHcC-CCCC--CchHHHHHHHHHHHHHhCCc-----EEEEC------------------------CCCCE
Confidence 36788889999986 3333 33468899999999999831 01111 22578
Q ss_pred EEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCcc
Q 002481 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (917)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (917)
++++ |. +.+.|++.+|+|+||. ++|+.|++.|+|++|.+++.|.+.+..++.+
T Consensus 60 ~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~ 133 (395)
T TIGR03320 60 LGYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYT 133 (395)
T ss_pred EEEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCce
Confidence 8887 42 2367999999999974 3899999999999999999999877667789
Q ss_pred EEEEEeCCcCCC-CcchHHHHhcCCCcCCceEEEEee
Q 002481 225 VIFLFNTGEEEG-LNGAHSFVTQHPWSTTIRVAVDLE 260 (917)
Q Consensus 225 I~Flf~~aEE~g-l~GS~~f~~~h~~~~~v~a~iNLD 260 (917)
|+|++..+||.+ ..|++.++.+... ...++|..|
T Consensus 134 i~~~~~~dEE~~~g~~~~~~~~~~~~--~~d~~iv~e 168 (395)
T TIGR03320 134 LLVTGTVQEEDCDGLCWQYIIEEDGI--KPEFVVITE 168 (395)
T ss_pred EEEEecccccccCchHHHHHHHhcCC--CCCEEEEcC
Confidence 999999999964 2344555543221 234445554
No 74
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.71 E-value=2.2e-07 Score=106.69 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEE
Q 002481 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (917)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (917)
+++.+.+++|.++ |-+ |..+.++.+||.++++++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~l~~Lv~i-ps~--s~~e~~~~~~l~~~l~~~g~~-----~~~~~------------------------~~~~v~ 60 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSE--SGDEGRVALRIKQEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCCc-----eEEEc------------------------CCCcEE
Confidence 5778889999986 333 334568899999999999831 01111 225888
Q ss_pred EEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccE
Q 002481 167 LRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (917)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (917)
+++ |. ..+.|++.+|+|+||. ++|+.|++.|++++|.+++.|.+.+..++.++
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 134 (395)
T TIGR03526 61 GYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceE
Confidence 887 42 2367999999999984 38999999999999999999998776677899
Q ss_pred EEEEeCCcCC-CCcchHHHHhc
Q 002481 226 IFLFNTGEEE-GLNGAHSFVTQ 246 (917)
Q Consensus 226 ~Flf~~aEE~-gl~GS~~f~~~ 246 (917)
.|++..+||. +..|++.++++
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 135 LVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEEecccccCCcHhHHHHHhc
Confidence 9999999994 44567776643
No 75
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.68 E-value=2e-07 Score=106.10 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccce
Q 002481 86 ELEAMKHVKALTQLGPHA-VGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (917)
Q Consensus 86 ~erA~~~L~~L~~igpr~-~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (917)
.+++.+.|++|.+|.... .++.++.++.+|+.++++ | ++++++. . + .+..|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~--~--~----------------~~~~n 56 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVID--H--G----------------AGAVS 56 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEec--C--C----------------CCceE
Confidence 457889999999985421 222234688999999996 4 2344331 0 0 03468
Q ss_pred EEEEEcCCCCCCCCCCEEEEEeeccccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCccE
Q 002481 165 IVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (917)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (917)
++++ .|+ +.|++++|+|+||. ++|+.|+++|+|+||.+++. ++.+|
T Consensus 57 li~~-~g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v 121 (364)
T PRK08737 57 LYAV-RGT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDA 121 (364)
T ss_pred EEEE-cCC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCE
Confidence 8885 231 46999999999984 26999999999999999873 35689
Q ss_pred EEEEeCCcCCCC-cchHHHHhcCCCcCCceEEEEeecC
Q 002481 226 IFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAVDLEAM 262 (917)
Q Consensus 226 ~Flf~~aEE~gl-~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (917)
.|+|+.+||.|. .|++.++++.. +..++|..|..
T Consensus 122 ~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ept 156 (364)
T PRK08737 122 AFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAEPT 156 (364)
T ss_pred EEEEEcccccCchhhHHHHHHhCC---CCCEEEEcCCC
Confidence 999999999987 69899986542 23455555533
No 76
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.58 E-value=3.5e-07 Score=102.62 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhccc-ccCCcceEEEEEEeccCCCcccccccccCccccccc
Q 002481 83 GFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKE-SKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (917)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~-~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (917)
..+.||+++...+|++. |-..|++++..-.++|...|+++-. +.+++ |.+.+. +. ...| .
T Consensus 4 ~is~e~v~~lt~~LV~~-~SvtgT~GE~a~ad~l~~vL~~~pYFqehpe-----d~~~~p-----i~-------nDpy-g 64 (553)
T COG4187 4 RISSERVRALTLSLVSW-PSVTGTPGEGAFADRLLGVLGELPYFQEHPE-----DLWLQP-----IH-------NDPY-G 64 (553)
T ss_pred hhhHHHHHHHHHHHeec-cccCCCcccccHHHHHHHHHhcCchhhhChH-----hhcccC-----CC-------CCcc-c
Confidence 45689999999999984 7889999998889999999988753 11221 111111 11 1123 5
Q ss_pred cceEEEEEcCCCCCCCCCCEEEEEeeccccCC------------------------------------------CCCCCC
Q 002481 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA------------------------------------------GEGAGD 199 (917)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------------------------------------spGA~D 199 (917)
..||.+-++|+ ++++.|++.+|+|+|.. ++|+.|
T Consensus 65 R~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 65 RRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred cceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 68999999984 57789999999999964 389999
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCC-----cCCceEEEEeecCcCC
Q 002481 200 CSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAVDLEAMGIG 265 (917)
Q Consensus 200 d~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~-----~~~v~a~iNLD~~G~g 265 (917)
+++|.|+-|..++.+++. ...+.+|.|+.+.+||....|.+.-+...+. .-...++||+|.++.-
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~ 210 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQ 210 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCC
Confidence 999999999999999986 5678899999999999988887766543322 1357899999988753
No 77
>PLN02693 IAA-amino acid hydrolase
Probab=98.51 E-value=1.6e-06 Score=101.17 Aligned_cols=120 Identities=17% Similarity=0.258 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEE
Q 002481 89 AMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLR 168 (917)
Q Consensus 89 A~~~L~~L~~igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~ 168 (917)
+.+..++|-+ +|.-|-++.++.+||.++|+++|. +++.. . ...||+++
T Consensus 49 ~~~~r~~lh~---~PE~s~~E~~ta~~i~~~L~~~G~------~~~~~----------~-------------~~~~via~ 96 (437)
T PLN02693 49 MVRIRRKIHE---NPELGYEEFETSKLIRSELDLIGI------KYRYP----------V-------------AITGIIGY 96 (437)
T ss_pred HHHHHHHHHh---CCCCCCchHHHHHHHHHHHHHCCC------eeEec----------C-------------CCcEEEEE
Confidence 3444444544 455566667999999999999983 33211 0 24799999
Q ss_pred EcCCCCCCCCCCEEEEEeeccccCCC-----------CC---CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcC
Q 002481 169 ILPKYASEAGENAILVSSHIDTVSAG-----------EG---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (917)
Q Consensus 169 i~g~~~~~~~~~~VLl~AH~DSv~~s-----------pG---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (917)
+.+ .+.+.|++.+|+|+||.. +| +-|.++++|++|.+++.|++.+...+.+|.|+|..+||
T Consensus 97 ~g~-----~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE 171 (437)
T PLN02693 97 IGT-----GEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE 171 (437)
T ss_pred ECC-----CCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc
Confidence 832 134789999999999852 12 66778899999999999988655667899999999999
Q ss_pred CCCcchHHHHhc
Q 002481 235 EGLNGAHSFVTQ 246 (917)
Q Consensus 235 ~gl~GS~~f~~~ 246 (917)
+..|++.++++
T Consensus 172 -~~~Ga~~~i~~ 182 (437)
T PLN02693 172 -GLSGAKKMREE 182 (437)
T ss_pred -chhhHHHHHHC
Confidence 55799999854
No 78
>PLN02280 IAA-amino acid hydrolase
Probab=98.50 E-value=2.1e-06 Score=101.23 Aligned_cols=133 Identities=19% Similarity=0.262 Sum_probs=91.0
Q ss_pred HHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEE
Q 002481 90 MKHVKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLR 168 (917)
Q Consensus 90 ~~~L~~L~~-igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~ 168 (917)
.+.|++|.+ +-.+|.-+.++.++.+||.++|+++|. +++... ...|++++
T Consensus 96 ~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~------~~~~~~-----------------------~~~~vva~ 146 (478)
T PLN02280 96 VAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGI------MYRYPL-----------------------AKTGIRAW 146 (478)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCC------eEEecC-----------------------CCCEEEEE
Confidence 344455544 222343455667999999999999983 333210 24699999
Q ss_pred EcCCCCCCCCCCEEEEEeeccccCCCC-----------C---CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcC
Q 002481 169 ILPKYASEAGENAILVSSHIDTVSAGE-----------G---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (917)
Q Consensus 169 i~g~~~~~~~~~~VLl~AH~DSv~~sp-----------G---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (917)
+ |+ .+++.|++.+|+|+||... | +-|...++|++|.+++.|++.+.+++.+|+|+|..+||
T Consensus 147 ~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE 221 (478)
T PLN02280 147 I-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEE 221 (478)
T ss_pred E-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 8 53 1237899999999998521 1 22234499999999999987666778899999999999
Q ss_pred CCCcchHHHHhcCCCcCCceEEEE
Q 002481 235 EGLNGAHSFVTQHPWSTTIRVAVD 258 (917)
Q Consensus 235 ~gl~GS~~f~~~h~~~~~v~a~iN 258 (917)
.| .|++.++++ ...+++.+++-
T Consensus 222 ~g-~Ga~~li~~-g~~~~~d~~~~ 243 (478)
T PLN02280 222 AG-NGAKRMIGD-GALDDVEAIFA 243 (478)
T ss_pred cc-chHHHHHHC-CCCcCCCEEEE
Confidence 97 499999854 33333344443
No 79
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.25 E-value=7.9e-06 Score=88.33 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=125.9
Q ss_pred CCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCC-cCCceEE
Q 002481 178 GENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 256 (917)
Q Consensus 178 ~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~-~~~v~a~ 256 (917)
.+..||+++|..+-. =|+||-||+|.+.-+++.|+.. +.+.+-+|+|-. +-.||-.|..+|.. .++++.-
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 566799999999864 6999999999999999999874 468899999987 35899999988876 4799999
Q ss_pred EEeecCcCCCCceeeecCCChHHHHHHHH-HccCCCCcccccccccCCCCCCCCchHHhhhcCCCeEEEEe-------ec
Q 002481 257 VDLEAMGIGGRSALFQAGPNLWAVENFAA-VAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFA-------YT 328 (917)
Q Consensus 257 iNLD~~G~gG~~~lfq~g~~~~li~~y~~-~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a-------~~ 328 (917)
+.+-+.|.+|....-++--...+++..+. .-.|-. +-. +++ ..+|.++|-|.|.. ||+++. -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~-s~~--~~~--dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCG-SNF--KAA--DFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCC-cCc--eee--ecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 99999998776554443323345554433 223322 211 122 35788999999975 444332 23
Q ss_pred CCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 002481 329 DKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (917)
Q Consensus 329 ~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~~ 366 (917)
+..+-|||..|+.+.|+++.|...-+.++.++..+-+.
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~N 356 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEIN 356 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44556999999999999998888777788887777554
No 80
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.99 E-value=1.8e-05 Score=87.67 Aligned_cols=130 Identities=24% Similarity=0.299 Sum_probs=83.2
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEeecC------cCC-----
Q 002481 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM------GIG----- 265 (917)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD~~------G~g----- 265 (917)
|-||.+||++++|++|.+++. ..+.+++|+|+..||.|+.||+..+.+. +...+|.+|.. |..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 779999999999999999874 4569999999999999999999877431 23455555543 221
Q ss_pred ---CCcee-eecCC--ChHHHHHHHHHcc---CCCCcccccccccCCCCCCCCchHHhhh-cCCCeEEEEeecCCCCCCC
Q 002481 266 ---GRSAL-FQAGP--NLWAVENFAAVAK---YPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYH 335 (917)
Q Consensus 266 ---G~~~l-fq~g~--~~~li~~y~~~a~---~p~~~~l~~e~f~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YH 335 (917)
|+.+. +..++ ++.+.+...+.|+ .|+. .+.+. ...||-..+.. -.|+|...++.-- .+.|
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q----~~~~~----~ggTDa~~~~~~~~Gi~t~~i~iP~--ry~H 275 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQ----REVFS----GGGTDAGAIQLSGGGIPTAVISIPC--RYMH 275 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EE----EEEES----SSSSTHHHHHTSTTSSEEEEEEEEE--BSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeE----EEecC----CcccHHHHHHHcCCCCCEEEEeccc--ccCC
Confidence 22232 22222 5667766665543 2321 12332 24788888764 2589998876432 2368
Q ss_pred CcCCCcC
Q 002481 336 TKNDRLD 342 (917)
Q Consensus 336 T~~Dt~d 342 (917)
|+.-+.+
T Consensus 276 s~~e~~~ 282 (292)
T PF05343_consen 276 SPVEVID 282 (292)
T ss_dssp STTEEEE
T ss_pred CcceEEE
Confidence 8765554
No 81
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00011 Score=82.61 Aligned_cols=141 Identities=19% Similarity=0.306 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCH----HHHHHHHHHHHHHHhcccccCCcceEEE-EEEeccCCCcccccccccCccccc
Q 002481 85 SELEAMKHVKALTQLGPHAVGSD----ALDRALQYVLAASQKIKESKHWEADVEV-DFFHAKSGANRVGTGVFKGKTLIY 159 (917)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~----~n~~a~~yL~~~l~~ig~~~~~~~~vev-d~f~~~~g~~~~~g~~~~~~~~~Y 159 (917)
..++..+.|++..+|.. ...-+ +-.++.+|+.++++++|.+ ++. |.=.++ ...| .+
T Consensus 14 ~~de~~~~L~e~v~iqs-vs~dp~~r~~v~rm~~~~~~~l~~lG~~------~~l~dlg~q~----~~~g--------~~ 74 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQS-VSADPTKRLEVRRMADWLRDYLTKLGAP------LELVDLGYQS----LPDG--------QI 74 (473)
T ss_pred cHHHHHHHHHHHhcccc-cccCccccHHHHHHHHHHHHHHHHhCCc------eeeeecccCC----CCCC--------cc
Confidence 45778889999988743 22222 3358999999999999942 222 110000 0111 11
Q ss_pred cccceEEEEEcCCCCCCCCCCEEEEEeeccccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcC
Q 002481 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWA 218 (917)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~ 218 (917)
....-++--..|+ +++++.+++-.|+|.+|. ++|+.||+.-|+.-+++++++.+.+
T Consensus 75 v~lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g 151 (473)
T KOG2276|consen 75 VPLPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLG 151 (473)
T ss_pred cccChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhC
Confidence 1122222222243 467899999999999986 3899999999999999999999999
Q ss_pred CCCCccEEEEEeCCcCCCCcchHHHHhcC
Q 002481 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (917)
Q Consensus 219 ~~p~~~I~Flf~~aEE~gl~GS~~f~~~h 247 (917)
..++.+|+|+|-+-||.|..|-...+++.
T Consensus 152 ~~lpvnv~f~~EgmEEsgS~~L~~l~~~~ 180 (473)
T KOG2276|consen 152 IDLPVNVVFVFEGMEESGSEGLDELIEKE 180 (473)
T ss_pred ccccceEEEEEEechhccCccHHHHHHHH
Confidence 89999999999999999999888776543
No 82
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0027 Score=73.31 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=122.3
Q ss_pred ccceEEEEEcCCCCC--CCC-CCEEEEEeeccccC----CCCCCCCChhHHHHHHHHHHHHHhcC--CCCCccEEEEEeC
Q 002481 161 DLNHIVLRILPKYAS--EAG-ENAILVSSHIDTVS----AGEGAGDCSSCVAVMLELARVMSQWA--HEFKNAVIFLFNT 231 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~--~~~-~~~VLl~AH~DSv~----~spGA~Dd~sgva~~LE~ar~L~~~~--~~p~~~I~Flf~~ 231 (917)
+..||..-+++-..+ ..+ .++++..+-+|+.. .++||.---.+....|.++|.|++.. ...++++.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 556777766543211 122 67899999999964 36888888999999999999998743 4578999999999
Q ss_pred CcCCCCcchHHHHhcC-----CCc-CC---ceEEEEeecCcCC--CCceeeecCC-C----hH---HHHHHHHHc-cCCC
Q 002481 232 GEEEGLNGAHSFVTQH-----PWS-TT---IRVAVDLEAMGIG--GRSALFQAGP-N----LW---AVENFAAVA-KYPS 291 (917)
Q Consensus 232 aEE~gl~GS~~f~~~h-----~~~-~~---v~a~iNLD~~G~g--G~~~lfq~g~-~----~~---li~~y~~~a-~~p~ 291 (917)
+|-.+.+||..++-+. |.+ ++ +..++.+-.+|-+ ++-.++..+- . .. .++.+++.. .|++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 9999999999876443 222 33 7777777777743 2323444221 1 12 233343321 2333
Q ss_pred CcccccccccCCCCCCCCchHHhhhcCCCeEEEEeecC---CCCCCCCcCCCcCCCCHHHH
Q 002481 292 GQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTD---KSAVYHTKNDRLDLLKPGSL 349 (917)
Q Consensus 292 ~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~i~~~sL 349 (917)
.- +.++-- +..+|..+=++..++..++.++-++-.+ ..-+||+.+|+.|+|+...-
T Consensus 316 ~l-l~~s~~-s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 316 DL-LKPSGS-SDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred ee-ecCCCC-CCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 21 112211 2235666666655645789999998765 33469999999999997654
No 83
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0061 Score=70.58 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHHHHhcC-CCCCccEEEEEeCCcCCCCcchHHHHhcCCCcCCceEEEEee
Q 002481 198 GDCSSCVAVMLELARVMSQWA-HEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (917)
Q Consensus 198 ~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~~~v~a~iNLD 260 (917)
.||.+|.+.++++++.+.+.. .-+..+|.+.|+++||.|+.|++.|.-. .-.+....++|
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a---~f~a~~ay~iD 203 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA---RFLADFAYTLD 203 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH---hhhcceeEecC
Confidence 488899999999999999643 4567899999999999999999988632 23456667777
No 84
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=96.09 E-value=0.31 Score=58.38 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=113.7
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcch
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGA 240 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS 240 (917)
++.||.+.++... .++.+.+++.+-+++.. | .-|..|++.+|.++|.+++... .-++|+|++.++| ..|.
T Consensus 2 ~G~nvy~i~rapR--~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~-wsKDii~l~~~~~---~~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAPR--GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSY-WSKDIIFLFTDDE---LAGM 71 (504)
T ss_pred CceEEEEEEecCC--CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchh-hhccEEEEecCCc---chHH
Confidence 5689999887642 45678899999988654 3 4458999999999999998643 4799999999865 4688
Q ss_pred HHHHhcCCC--------------cCCceEEEEeecCcCCCCce-eeecCC-----ChHHHHHHHHHccCC---CCccc--
Q 002481 241 HSFVTQHPW--------------STTIRVAVDLEAMGIGGRSA-LFQAGP-----NLWAVENFAAVAKYP---SGQII-- 295 (917)
Q Consensus 241 ~~f~~~h~~--------------~~~v~a~iNLD~~G~gG~~~-lfq~g~-----~~~li~~y~~~a~~p---~~~~l-- 295 (917)
++|++++-. +..+++.+|+|-.+.....+ +.-.|. |..+++...+.+.+. .+...
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 899875411 23689999999887654443 222343 445555543332211 10000
Q ss_pred ------ccc------------cccCCCCCCCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHH
Q 002481 296 ------GQD------------LFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENML 357 (917)
Q Consensus 296 ------~~e------------~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl 357 (917)
..+ +.+.+.-....+|..|.+ -+|.++.+.-.... .+ . .....+.|+.+-
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~~------~~--~---~~~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKST------GP--G---PHDFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccCC------CC--C---CcCHHHHHHHHH
Confidence 000 011111113567889998 68999988321111 11 1 112456777788
Q ss_pred HHHHHHhcC
Q 002481 358 DFLLQTASS 366 (917)
Q Consensus 358 ~lv~~la~~ 366 (917)
.++|.+-|-
T Consensus 220 ~~~RslNNL 228 (504)
T PF04114_consen 220 GIFRSLNNL 228 (504)
T ss_pred HHHHHHHHH
Confidence 888888654
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=95.83 E-value=0.17 Score=58.57 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=93.1
Q ss_pred HHHHHc-CCCCCCCCHHHHHHHHHHHHHHHhcccccCCcceEEEEEEeccCCCcccccccccCccccccccceEEEEEcC
Q 002481 93 VKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (917)
Q Consensus 93 L~~L~~-igpr~~GS~~n~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (917)
|.++.+ +--+|--+-++.++.+||.+.|++.|. + .++. . + ..+-|++.+.+
T Consensus 14 l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~------~-~~~~---------~-~-----------~~TGvva~~~~ 65 (392)
T COG1473 14 LIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGF------E-VVEV---------G-G-----------GKTGVVATLKG 65 (392)
T ss_pred HHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCC------e-eEec---------c-C-----------CceEEEEEEcC
Confidence 444433 444566677778999999999999983 2 1110 0 0 23678999986
Q ss_pred CCCCCCCCCEEEEEeeccccCC-----------CCC----CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCC
Q 002481 172 KYASEAGENAILVSSHIDTVSA-----------GEG----AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG 236 (917)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~-----------spG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~g 236 (917)
. .+.+.|.+=|-||-.|. .+| -+=| .-.+++|-+++.|++....++.+|+|+|-.+||.+
T Consensus 66 g----~~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~ 140 (392)
T COG1473 66 G----KPGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGG 140 (392)
T ss_pred C----CCCCEEEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEEeccccccc
Confidence 4 34458999999999984 244 1112 23688899999999865688999999999999988
Q ss_pred CcchHHHHhcCCCcCC-ceEEEEee
Q 002481 237 LNGAHSFVTQHPWSTT-IRVAVDLE 260 (917)
Q Consensus 237 l~GS~~f~~~h~~~~~-v~a~iNLD 260 (917)
- |++.++++ -..++ +.+++-+-
T Consensus 141 ~-Ga~~mi~~-G~~~~~vD~v~g~H 163 (392)
T COG1473 141 G-GAKAMIED-GVFDDFVDAVFGLH 163 (392)
T ss_pred c-cHHHHHhc-CCccccccEEEEec
Confidence 7 99999853 32344 66666554
No 86
>PRK02813 putative aminopeptidase 2; Provisional
Probab=90.18 E-value=1 Score=52.95 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=83.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCc---chHH-----------HHhcCC-----CcCCceE
Q 002481 195 EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRV 255 (917)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~---GS~~-----------f~~~h~-----~~~~v~a 255 (917)
.++-||-+||.+++|+++.+.. +.++++++++-||.|.. ||+. -..... ..-.-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 4688999999999999987532 67999999999999998 7774 110000 1123356
Q ss_pred EEEeecCcCC------------------CCceeee-c-C--CChHHHHHHHHH---ccCCCCcccccccccCCCCCCCCc
Q 002481 256 AVDLEAMGIG------------------GRSALFQ-A-G--PNLWAVENFAAV---AKYPSGQIIGQDLFASGVFETATD 310 (917)
Q Consensus 256 ~iNLD~~G~g------------------G~~~lfq-~-g--~~~~li~~y~~~---a~~p~~~~l~~e~f~~g~ips~TD 310 (917)
+|.+|++-+. |..+-+. . + +++.....+.+. +.-|. |.....+..|++||
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-----Q~~v~~~d~~gGst 379 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-----QEFVNRSDMPCGST 379 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCccH
Confidence 6777755332 2221111 0 1 244444444333 23333 22122234567889
Q ss_pred hHHhhh-cCCCeEEEEeecCCCCCCCCcCCCcCCCCHH
Q 002481 311 FQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPG 347 (917)
Q Consensus 311 ~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~ 347 (917)
-.++.. ..|+|.+|+.--- -.-|++..+...-|..
T Consensus 380 ig~i~~s~~Gi~tvdiGiP~--l~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 380 IGPITAARLGIRTVDVGAPM--LAMHSARELAGVKDHA 415 (428)
T ss_pred HHHHHHhCCCCcEEEeChhh--cccccHHHHccHHHHH
Confidence 888865 4799999985321 1259988776654443
No 87
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=87.61 E-value=4.2 Score=48.37 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=86.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcC-CCCCccEEEEEeCCcCCCCcchHHHHhcC-CC-------cCCce-----------
Q 002481 195 EGAGDCSSCVAVMLELARVMSQWA-HEFKNAVIFLFNTGEEEGLNGAHSFVTQH-PW-------STTIR----------- 254 (917)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~Flf~~aEE~gl~GS~~f~~~h-~~-------~~~v~----------- 254 (917)
.++-||-.||.++||+++.+.... ..+....++++++-||.|..|+++-.... +. +.+..
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 468899999999999998765310 11344455555999999998877643211 11 01111
Q ss_pred ----EEEEeecCcC------------------CCCceeee----cCCChHHHHHHHHHc---cCCCCcccccccccCCCC
Q 002481 255 ----VAVDLEAMGI------------------GGRSALFQ----AGPNLWAVENFAAVA---KYPSGQIIGQDLFASGVF 305 (917)
Q Consensus 255 ----a~iNLD~~G~------------------gG~~~lfq----~g~~~~li~~y~~~a---~~p~~~~l~~e~f~~g~i 305 (917)
.+|..|++-+ +|..+-+. ..+++.....+.+.+ .-|+ |.....+..
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~-----Q~~~~~~d~ 401 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPI-----QEFVVKNDS 401 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCC
Confidence 7788886533 12222122 112555555554443 2333 221222346
Q ss_pred CCCCchHHhhh-cCCCeEEEEeecCCCCCCCCcCCCcCCCCHHHH
Q 002481 306 ETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSL 349 (917)
Q Consensus 306 ps~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sL 349 (917)
|++||-.++.. ..|||.+|+.--- -.-|++..+...-|...+
T Consensus 402 ~~GsTig~i~~s~~Gi~tvDiGiP~--l~MHS~rE~~~~~D~~~~ 444 (465)
T PTZ00371 402 PCGSTIGPILSSNLGIRTVDIGIPQ--LAMHSIREMCGVVDIYYL 444 (465)
T ss_pred CCcchHHHHHHhCCCCcEEEechhh--cccccHHHHccHHHHHHH
Confidence 77888888865 5899999985321 225998887776555433
No 88
>PRK02256 putative aminopeptidase 1; Provisional
Probab=78.43 E-value=2.9 Score=49.58 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=42.9
Q ss_pred EEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHH
Q 002481 182 ILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFV 244 (917)
Q Consensus 182 VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~ 244 (917)
-+++.+-|=+ +.++-||-.||.+++|+++.+. .++..+++++++-||.|..|++.-.
T Consensus 245 ~~~G~~~efI--~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 245 RDVGLDRSLI--GAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred ceecccccee--eccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 3344444433 3578999999999999998654 3567899999999999987776543
No 89
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.07 E-value=28 Score=42.02 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=58.8
Q ss_pred ccceEEEEEcCCCCCCCCCCEEEEEeeccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcch
Q 002481 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGA 240 (917)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS 240 (917)
++.||.+.+++.. .++.+.+++..-|+.-. |. |-.|++.++..++.+++.. --.++|+|++.++ ...|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~---~~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDG---PALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCC---ccccH
Confidence 4789999997642 45677888888888654 33 4788999999999998753 3568999999988 46777
Q ss_pred HHHHhcC
Q 002481 241 HSFVTQH 247 (917)
Q Consensus 241 ~~f~~~h 247 (917)
.+|.+++
T Consensus 188 ~AwLeaY 194 (617)
T KOG3566|consen 188 DAWLEAY 194 (617)
T ss_pred HHHHHHh
Confidence 8888754
No 90
>PRK08126 hypothetical protein; Provisional
Probab=53.29 E-value=4.3e+02 Score=31.43 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=32.1
Q ss_pred EEEEEeeccccCCCCCC--CCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCc
Q 002481 181 AILVSSHIDTVSAGEGA--GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (917)
Q Consensus 181 ~VLl~AH~DSv~~spGA--~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aE 233 (917)
.|.|.+|.|+.+...|. +.-.-+.+=.-.+.+.|.+.|.+ ...|.....+..
T Consensus 355 ~I~V~GHTD~~p~~s~~~~~N~~LS~~RA~aV~~~L~~~Gv~-~~ri~~~G~G~~ 408 (432)
T PRK08126 355 KVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVP-ASRLEAVGKGDA 408 (432)
T ss_pred eEEEEEecCCCCccCCccchHHHHHHHHHHHHHHHHHHcCCC-HHHeEEEEecCc
Confidence 69999999999854443 23344555566677777766543 334655554443
No 91
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=46.88 E-value=6.4 Score=43.25 Aligned_cols=7 Identities=0% Similarity=0.416 Sum_probs=0.0
Q ss_pred ceEEEee
Q 002481 394 KYMVLYH 400 (917)
Q Consensus 394 ~~~v~y~ 400 (917)
||||..|
T Consensus 39 w~~iims 45 (381)
T PF05297_consen 39 WFFIIMS 45 (381)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 3344333
No 92
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=40.93 E-value=2.2e+02 Score=27.21 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=34.4
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccee
Q 002481 421 ASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYV 470 (917)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~~sw~ 470 (917)
..+.+.+.....++.....+.+.....+...+.++|.++.+. +..|+++
T Consensus 32 ~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 32 FTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 344444444456666666667777888888899999998854 6788775
No 93
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=34.13 E-value=80 Score=36.16 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 002481 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (917)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~~ 366 (917)
...||...|.+ .|+|.+.+... +...-|++. |+++.+.+....+....++.+|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999987 89999865332 223467755 8889999999999999999999864
No 94
>PRK07033 hypothetical protein; Provisional
Probab=29.40 E-value=1e+03 Score=28.26 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=33.8
Q ss_pred CEEEEEeeccccCCCCC--CCCChhHHHHHHHHHHHHHhcCCCCCccEEEEEeCCcC
Q 002481 180 NAILVSSHIDTVSAGEG--AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (917)
Q Consensus 180 ~~VLl~AH~DSv~~spG--A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~aEE 234 (917)
..|.|.+|-|+.+...+ .+....+.+=.-.+.+.|.+.+..++ .|.....+..+
T Consensus 345 ~~I~V~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~G~G~~~ 400 (427)
T PRK07033 345 GNVLVTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLGQPE-RVTAEGRGDSD 400 (427)
T ss_pred CeEEEEEEeCCCCccccccchHHHHHHHHHHHHHHHHHHcCCCcc-eEEEEEECCCC
Confidence 46999999999975333 23444555666677777877665443 45555554443
No 95
>PRK07522 acetylornithine deacetylase; Provisional
Probab=29.21 E-value=1.4e+02 Score=34.01 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHH
Q 002481 276 NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGEN 355 (917)
Q Consensus 276 ~~~li~~y~~~a~~p~~~~l~~e~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~ 355 (917)
+..+++.++++...+... ..+..||-..|.. .|+|.+.+..... ...||+. |+++.+.+....+.
T Consensus 311 ~~~~v~~~~~~~~~~~~~----------~~~~~td~~~~~~-~gip~v~~Gpg~~-~~~H~~~---E~i~i~~l~~~~~~ 375 (385)
T PRK07522 311 DAAAARLVRALTGDNDLR----------KVAYGTEAGLFQR-AGIPTVVCGPGSI-EQAHKPD---EFVELAQLAACEAF 375 (385)
T ss_pred CcHHHHHHHHHhCCCCcc----------eEeeecchHHhcc-CCCCEEEECCCCh-hhCCCCC---ccccHHHHHHHHHH
Confidence 355777777654332210 1234689999986 8999986543322 3678855 78999999999999
Q ss_pred HHHHHHHHh
Q 002481 356 MLDFLLQTA 364 (917)
Q Consensus 356 vl~lv~~la 364 (917)
+..++..+|
T Consensus 376 ~~~~~~~~~ 384 (385)
T PRK07522 376 LRRLLASLA 384 (385)
T ss_pred HHHHHHHHh
Confidence 988888776
No 96
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=26.76 E-value=9.5e+02 Score=27.02 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCCCccEEEEEeCCcCCCCcchHHHHhcCCCc
Q 002481 204 VAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWS 250 (917)
Q Consensus 204 va~~LE~ar~L~~~~~~p~~~I~Flf~~aEE~gl~GS~~f~~~h~~~ 250 (917)
...+=|+++.|......--..+.+++...+|.-.+-....+..+|..
T Consensus 240 ~~~l~~aL~~l~~~~~~~l~a~evlWtP~~~gd~Ls~~ell~~yP~L 286 (289)
T PF07466_consen 240 AEDLREALRKLGSISSDRLLAVEVLWTPQAEGDTLSEDELLADYPDL 286 (289)
T ss_pred HHHHHHHHHHHhCCChhheeeEEEEECCCCCCCccCHHHHHHhCccc
Confidence 35566777777653222345799999999999999999988888764
No 97
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=25.65 E-value=1.2e+02 Score=27.95 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=6.2
Q ss_pred HHhhhhhcccc
Q 002481 59 SYGVYYYQYEH 69 (917)
Q Consensus 59 ~~~v~~~~~~~ 69 (917)
.|+++.|....
T Consensus 46 ~WiVvyYi~~~ 56 (87)
T PF06781_consen 46 LWIVVYYISGG 56 (87)
T ss_pred HHHhhhhcccC
Confidence 55666565544
No 98
>PRK08596 acetylornithine deacetylase; Validated
Probab=25.61 E-value=1.3e+02 Score=35.02 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCCCchHHhhhcCCCeEEEEeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 002481 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (917)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~~ 366 (917)
++.||...|.+ .|+|++.+.... ....|++. |+++.+.+....+.+..++.++...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 45789999988 899998776543 34578855 8899999999999999999888743
No 99
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.61 E-value=77 Score=25.98 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHhhCCcchHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 002481 651 YVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSE 686 (917)
Q Consensus 651 ~i~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~Pf~~ 686 (917)
...+++|.|.-+.++.++.++.++.+..+...||++
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 345677667666666555555555555566668853
No 100
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=24.92 E-value=1.2e+03 Score=27.67 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 002481 585 LATLLLGLAVPVLVSAGNIIRLANVLVATLVR 616 (917)
Q Consensus 585 ~~~~~~~~~~P~~~~~~l~~~~~~~~~p~~gR 616 (917)
...+.-.++.|+++...+....-.++.|.++|
T Consensus 187 ~~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 187 AYTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 34444566788888777766666667787766
No 101
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=22.68 E-value=2.1e+03 Score=29.73 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcceecchhHHHHHhHHHHHHHHHHHHH
Q 002481 444 MLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQH 493 (917)
Q Consensus 444 ~~~~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~~gLy~~p~~~g~~~~~~ 493 (917)
++-+++...++||++++.-.+.+ .=.++ +.-+|+....++.++++++
T Consensus 2261 sFn~av~iN~lVAffYPf~~~~~-g~ls~--l~sll~W~av~~s~~i~~~ 2307 (2706)
T KOG3533|consen 2261 SFNLAVIINALVAFFYPFPEHSN-GSLSS--LGSLLSWFAVFISFLIAHY 2307 (2706)
T ss_pred hhhHHHHHHHHHHhccCCCCCCC-cchhh--HHHHHHHHHHHHHHHHHHH
Confidence 56678888999999998543222 11111 3344555556666655543
No 102
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=21.93 E-value=6.7e+02 Score=23.56 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=6.3
Q ss_pred HhcccccCCCc
Q 002481 572 ATLTPVRLTRP 582 (917)
Q Consensus 572 ~~~~~~~~~~~ 582 (917)
....+.||.+.
T Consensus 65 l~vRRlhD~G~ 75 (120)
T PF05656_consen 65 LTVRRLHDIGR 75 (120)
T ss_pred HHhhhhhcCCC
Confidence 34456677654
No 103
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=21.89 E-value=3.1e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcchHHHHH
Q 002481 637 IAVVSCLTLVYLLSYVHLSGAKGPIAFAS 665 (917)
Q Consensus 637 ~a~~~~l~~~~l~P~i~~~~~~~~i~~~l 665 (917)
++.+..+....+-|+..++|+|..-+...
T Consensus 13 is~~lG~~~~~~~pl~~llk~p~tai~~i 41 (61)
T PF05421_consen 13 ISVMLGLFLIIFEPLKPLLKNPVTAIALI 41 (61)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 34444456678899999999886555443
No 104
>PRK07338 hypothetical protein; Provisional
Probab=20.92 E-value=1.5e+02 Score=34.16 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=43.2
Q ss_pred CCCCCchHHhhhcCCCeEEE-EeecCCCCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 002481 305 FETATDFQVYTEVAGLSGLD-FAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (917)
Q Consensus 305 ips~TD~~~F~~~~GIPgld-~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~~ 366 (917)
.+..||-..|.. .|+|.++ +.. .+...|++. |+++.+.+....+.+..++..++..
T Consensus 344 ~~g~tDa~~~~~-~giP~v~~~Gp--g~~~~H~~~---E~v~i~~l~~~~~~~~~~l~~~~~~ 400 (402)
T PRK07338 344 SGGVCDGNNLAA-AGLPVVDTLGV--RGGNIHSED---EFVILDSLVERAQLSALILMRLAQG 400 (402)
T ss_pred CCccchHHHHhh-cCCCeEeccCC--CCCCCCCcc---ceEehhhHHHHHHHHHHHHHHHhcC
Confidence 346799999987 7999996 333 234468865 7888999999999999998888653
No 105
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=20.84 E-value=1.3e+03 Score=26.91 Aligned_cols=23 Identities=9% Similarity=-0.076 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCcch
Q 002481 638 AVVSCLTLVYLLSYVHLSGAKGP 660 (917)
Q Consensus 638 a~~~~l~~~~l~P~i~~~~~~~~ 660 (917)
+...+...|++..+..+.+++..
T Consensus 123 ~~~~~i~IG~l~~~~~~~~~k~~ 145 (367)
T PF09971_consen 123 FIQFFIIIGFLALILKRIYKKIK 145 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33556677888888888765533
No 106
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=20.30 E-value=4e+02 Score=26.32 Aligned_cols=29 Identities=14% Similarity=-0.093 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccC
Q 002481 549 KIGSTYMALVWLVPPAFAYGFLEATLTPVRL 579 (917)
Q Consensus 549 ~i~S~y~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (917)
...|+|++.+-+.+.... .+....++.|+
T Consensus 98 ~~ws~~l~Y~gLalMv~v--siWD~vsPa~r 126 (139)
T PRK13755 98 NGWSANLLYVGLALMVGV--SIWDFVSPAHR 126 (139)
T ss_pred hhHHHHHHHHHHHHHHHH--HHHHhcCcccc
Confidence 445777655544443222 44555566554
No 107
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=20.30 E-value=1.7e+02 Score=33.63 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCCchHHhhhcCCCeEEEEeecCC-CCCCCCcCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 002481 306 ETATDFQVYTEVAGLSGLDFAYTDK-SAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (917)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~-~~~YHT~~Dt~d~i~~~sLq~~g~~vl~lv~~la~ 365 (917)
+..||...|.+ .|+|.+.+..... ....|++.. +++.+.+.+..+....++.++++
T Consensus 343 ~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~dE---~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 343 PGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHNE---FLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred cCcchHHHHHh-CCCCeEEECCccCCcccccCCCC---ceEHHHHHHHHHHHHHHHHHhhc
Confidence 46799999987 8999986554332 235798654 68899999999999999988864
Done!