Your job contains 1 sequence.
>002482
MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK
VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY
CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNAL
PPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVSATL
PTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLEL
GKEYIDALSSTNEEATLDSIPATATSNQYITCRPTSKSSEKDIATPSSRTSSSESTKPFS
SPGSVEDESSHIVMDFQGLCCGLSSIGLESQFEKDRSLPVVPNSSISKHVSVNLPGSHGP
QEEKSGQFTECKSFQASMAAPTMEDSPDFDDLQFKGLEDMHHLPPISSTPHLPHNLNQSS
YLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSRSENLISNGFITNEASSFFNLDATVQHS
SLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSLTSPYSFAKL
LRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPN
GLLKNKDIFTDKHQNAFSSSSSMDSDNFLGSHSFISSSVSKAPTSVPPGFAVPNRAPPPG
FSPHGTMQKPFDSSASHLRWTSAQAAGNSGPCGDIPFVDPAILEVGKGLQAIGLNNLGCD
MRQTPSSQLNPFEHEARLQLLMQQSSSGYQNLRFQDYPMNRFSPPSDTYGISSKVLNQPQ
PNNLSSFTQSPAQQYRNAHMSTGHLGSLKGVKSINDLGVSDLMTNGGIGFNKFIPSYEDL
KCQMSNSSNLYNRGFAM
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002482
(917 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085617 - symbol:AT3G45630 species:3702 "Arabi... 1051 3.1e-106 1
TAIR|locus:2056563 - symbol:AT2G28540 species:3702 "Arabi... 731 1.4e-103 2
UNIPROTKB|E2QXU6 - symbol:CNOT4 "Uncharacterized protein"... 401 6.3e-36 2
UNIPROTKB|I3LC53 - symbol:LOC100622832 "Uncharacterized p... 391 2.9e-35 1
UNIPROTKB|E1C4B3 - symbol:CNOT4 "Uncharacterized protein"... 410 4.5e-35 2
UNIPROTKB|Q5ZJC9 - symbol:CNOT4 "Uncharacterized protein"... 407 9.7e-35 2
UNIPROTKB|E2QXU8 - symbol:CNOT4 "Uncharacterized protein"... 401 1.5e-34 3
MGI|MGI:1859026 - symbol:Cnot4 "CCR4-NOT transcription co... 391 1.9e-34 2
UNIPROTKB|D4ADF8 - symbol:Cnot4 "RCG28297" species:10116 ... 391 1.9e-34 2
UNIPROTKB|O95628 - symbol:CNOT4 "CCR4-NOT transcription c... 391 1.9e-34 2
RGD|1310318 - symbol:Cnot4 "CCR4-NOT transcription comple... 401 1.9e-34 3
FB|FBgn0051716 - symbol:Cnot4 "Cnot 4 homologue" species:... 396 4.9e-34 2
ZFIN|ZDB-GENE-090313-262 - symbol:si:dkey-230e6.2 "si:dke... 392 8.4e-34 4
ZFIN|ZDB-GENE-040426-1164 - symbol:zgc:63566 "zgc:63566" ... 387 9.3e-34 4
UNIPROTKB|F1MWA7 - symbol:CNOT4 "Uncharacterized protein"... 391 1.8e-33 3
UNIPROTKB|E2QXU7 - symbol:CNOT4 "Uncharacterized protein"... 391 1.8e-33 3
DICTYBASE|DDB_G0275005 - symbol:DDB_G0275005 "putative CC... 371 2.5e-33 5
UNIPROTKB|F1MAD6 - symbol:Cnot4 "Protein Cnot4" species:1... 391 3.0e-33 3
UNIPROTKB|F8VQP3 - symbol:CNOT4 "CCR4-NOT transcription c... 391 3.0e-33 3
POMBASE|SPAC16C9.04c - symbol:mot2 "CCR4-Not complex subu... 370 5.3e-33 1
SGD|S000000870 - symbol:MOT2 "Ubiquitin-protein ligase su... 364 1.8e-30 2
WB|WBGene00003827 - symbol:ntl-4 species:6239 "Caenorhabd... 362 3.3e-29 4
CGD|CAL0000791 - symbol:NOT4 species:5476 "Candida albica... 342 9.8e-28 2
UNIPROTKB|Q59UI5 - symbol:NOT4 "Potential mRNA deadenylas... 342 9.8e-28 2
CGD|CAL0003874 - symbol:PGA55 species:5476 "Candida albic... 129 0.00041 1
UNIPROTKB|Q59SG9 - symbol:PGA55 "Flocculin-like protein" ... 129 0.00041 1
>TAIR|locus:2085617 [details] [associations]
symbol:AT3G45630 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00184
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
eggNOG:COG5175 EMBL:AL138657 HSSP:O95628 HOGENOM:HOG000085071
IPI:IPI00541447 PIR:T47503 RefSeq:NP_190149.1 UniGene:At.36006
ProteinModelPortal:Q9M1E4 SMR:Q9M1E4 IntAct:Q9M1E4
MINT:MINT-1366149 PaxDb:Q9M1E4 PRIDE:Q9M1E4
EnsemblPlants:AT3G45630.1 GeneID:823705 KEGG:ath:AT3G45630
TAIR:At3g45630 InParanoid:Q9M1E4 OMA:KPSAVEN PhylomeDB:Q9M1E4
ProtClustDB:CLSN2684762 Genevestigator:Q9M1E4 Uniprot:Q9M1E4
Length = 989
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 338/954 (35%), Positives = 487/954 (51%)
Query: 6 RQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVS 65
R+K QK+KPK S+GR LT+VRV+QRNLVYI+GLP+NLADEDLLQRKEYFGQYGKVLKVS
Sbjct: 83 RKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNLADEDLLQRKEYFGQYGKVLKVS 142
Query: 66 ISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWI 125
+SRTATG IQ NN+C VYITY +E++AIRCIQSVH +ILDG+ L+ACFGTTKYCHAW+
Sbjct: 143 MSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTKYCHAWL 202
Query: 126 RNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPPPAD 185
RN+ C+ DCLYLH+ GSQEDSFTKDEI+SA TR VQQI GATN M RSG+ LPPP D
Sbjct: 203 RNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTR--VQQITGATNTMQYRSGSMLPPPLD 260
Query: 186 EYINSNITSTAKPIAK-NSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVSA--TLPT 242
Y + + ST PIAK SS + P + + +GKS +LP AASW R++ +L T
Sbjct: 261 AYTSDS--STGNPIAKVPSSTSVSAPKSSPPSGS-SGKSTALPAAASWGARLTNQHSLAT 317
Query: 243 NKNLSGPVRPPSNQPKAS-NGPQVPGTEV-------VSTTISIQTV---QPMEAVATSKV 291
+ +G + NQ S NG T V VS++ S+Q + ++++A
Sbjct: 318 SALSNGSL---DNQRSTSENGTLATSTVVTKAANGPVSSSNSLQKAPLKEEIQSLAEKSK 374
Query: 292 HHKLDPLELGKEYIDALS----STNEEATLDSIPATATS--NQYITCRPTS--KSSE--K 341
L PL+ K +D S S N + + + I S N + +P++ S E
Sbjct: 375 PGVLKPLQQ-KIVLDPESKRTTSPNRDPSSNQISCLVESSYNSRVIDKPSAVENSLEHTS 433
Query: 342 DIAXXXXXXXXXXXXXX-XXXXXXVEDESSHIVMDFQGLCCGLSSIGLESQFEKD-RSLP 399
+IA DE+ + + G C L SI +Q + D ++L
Sbjct: 434 EIAEDVFDVGKLSADVAWMGITTNSRDETPGVPVVI-GTHCDLGSI---TQSDNDVQNLE 489
Query: 400 VVPNSSISK---HVSVNLPGSHGPQEEKSGQFTECKSFQASMAAPT-MEDSPDFDDLQFK 455
S + ++L G HG + E + + +S Q + P + D F++ + +
Sbjct: 490 QCRKQSPTNTYAEADISLNGIHGSRPEWDWR-SGLQS-QIDVKEPLEVNDFSSFNNNR-R 546
Query: 456 GLEDM--HHLPPISSTPHLPHNLNQSSYLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSR 513
G+ + H SS+ + + N + S+Q + S +D +G+ E+ R
Sbjct: 547 GIAEAVSHSTSKFSSSISILDS-NHLASRSFQNRETS--CGMDSKTGS----SFEIGSDR 599
Query: 514 SENLISNGFITNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVAS-DVGE 572
+ NGF + +A S ++HS LF+ G + D ++ SN+ D +
Sbjct: 600 LH--LPNGF-SEKAMS------NMEHS-LFANEGRSNIQNTEDDII----SNILDFDPWD 645
Query: 573 SSIISKILSLDADAWEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQ 632
S+ S+ D S + LL++ N Q S +R S++
Sbjct: 646 ESLTSQHNFAKLLGQSDHRASTLESSNLLKQHNDQSRFSFARHEESNSQAYDNR-SYSIY 704
Query: 633 EEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFXXXXXXXXXNFLGSH 692
+ S E + + D+ + NG N ++ ++ F +
Sbjct: 705 GQLSRDQPLQEFGANRDMYQ-DKLGSQNGFASN---YSGGYEQ-FATSPGLSSYKSPVAR 759
Query: 693 SFISSSVS-KAPTSVPP-GFAVPNRAPPPGFSPHGTMQKPFDSSASHLR--WTSAQAAGN 748
+ +S+ AP +PP GF+ R GT + DS A+ LR + +GN
Sbjct: 760 TQVSAPPGFSAPNRLPPPGFSSHQRGDLSSDIASGT--RLLDS-ANLLRNAYHVPPPSGN 816
Query: 749 SGPCGDIPFVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLNPFEHEARLQLLMQQSSSG 808
GDI F+DPAIL VG+G G+ D+R SSQLN F+++ARLQLL Q+S +
Sbjct: 817 LNAAGDIEFIDPAILAVGRGRLHNGMETADFDLRSGFSSQLNSFDNDARLQLLAQRSLAA 876
Query: 809 YQNLRFQDYP--MNRFSPP-SDTYGISSKVLNQPQPNNLSSFTQSPAQQYRNAHMSTGHL 865
Q F D P +N FS SD YGISS+ +Q Q LS FTQ P Q N +S GH
Sbjct: 877 QQVNGFHD-PRNVNNFSSSFSDPYGISSRPTDQTQGTGLSPFTQLPRQASANPLLSNGHW 935
Query: 866 GSL-KGVKSINDLGVSDLMTNGGIGFNKFIPS-YEDLKCQMSNSSNLYNRGFAM 917
+ +S N+LG++ L+ N +GFN + S +E+ K + + YNR + +
Sbjct: 936 DNKWNEPQSGNNLGITQLLRNERMGFNDNVYSGFEEPKFRRPGPGDPYNRTYGI 989
>TAIR|locus:2056563 [details] [associations]
symbol:AT2G28540 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AK228764 IPI:IPI00540319
RefSeq:NP_001031437.2 UniGene:At.38609 ProteinModelPortal:Q0WQD5
SMR:Q0WQD5 PRIDE:Q0WQD5 EnsemblPlants:AT2G28540.2 GeneID:817402
KEGG:ath:AT2G28540 TAIR:At2g28540 HOGENOM:HOG000085071
InParanoid:Q0WQD5 OMA:RIIANIM PhylomeDB:Q0WQD5
ProtClustDB:CLSN2681703 Genevestigator:Q0WQD5 Uniprot:Q0WQD5
Length = 960
Score = 731 (262.4 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 157/334 (47%), Positives = 212/334 (63%)
Query: 6 RQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVS 65
R+KSQKAKPKP+EGR LT VRVIQRNLVY++ LP +LADED+ QR+EYFGQYGKV+KV+
Sbjct: 83 RKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFDLADEDMFQRREYFGQYGKVVKVA 142
Query: 66 ISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWI 125
+SRTA G +Q NN+C VYITYS+E++AIRCI+SVH +ILDGR L+ACFGT KYCHAW+
Sbjct: 143 MSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHGFILDGRNLKACFGTMKYCHAWL 202
Query: 126 RNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPPPAD 185
RNMPCS +CLYLH+ G+QEDSF+KDE +SA R VQ I G ++ RRSG+ LPPP D
Sbjct: 203 RNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQDITGWRDHYVRRSGSMLPPPVD 262
Query: 186 EYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVSATLPTNKN 245
+Y+++ S+ + I K N + + S + S +LP A W M S +P +
Sbjct: 263 DYVDNE--SSTRIIPKVVLNNVHSAAKNSPPNDSNSHSVTLPAGAMWGMHSS--VPNTPS 318
Query: 246 LSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLEL--GKE 303
P+R S S+ + T++ S + ++ +P A V L P L GK
Sbjct: 319 SREPLRDKS--ATVSSAVAINPTQISSRSDELR--KPALEAAGGNV---LKPQSLLDGKT 371
Query: 304 YIDALSSTNEEATLDS--IPATATSNQYITCRPT 335
LSS+N+ +S + + + N P+
Sbjct: 372 DFPELSSSNKTQISNSRNVVSASVDNSRAISEPS 405
Score = 315 (115.9 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 118/407 (28%), Positives = 189/407 (46%)
Query: 512 SRSENL--ISNGFITNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASD 569
SR N+ ISNG+ S L+ ++ HS L + + ++ H + S+
Sbjct: 580 SRGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPDKARDTQ--PIENCFVDSHES-PSE 636
Query: 570 VGESSIISKILSLDADAWEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSF 629
+ + II+ I+SLD D + LTSP+++A ES+ + SLK+ S K D QSRFSF
Sbjct: 637 I-DDRIIANIMSLDLDEY---LTSPHNYANPFGESDEEARSLKLASSSKVED-NQSRFSF 691
Query: 630 ARQEEFSNHASDVEHSLSNIRHSAD------QHPAPN-GLLKNKDIFTDKHQNAFXXXXX 682
ARQEE + A D ++ + + D + +PN G+ + + ++
Sbjct: 692 ARQEEPKDQAFDSYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYRRGLDYVTE 751
Query: 683 XXXXNFLGSHSFISSSVSKAPTSVPPGFAVP--NRAPPPGFSPHGTMQKPFDSSASHLRW 740
L S S+ +SV + P S PPGF+VP +R PPPGFS +G + D + + R+
Sbjct: 752 SST---LPS-SYKPTSVPRCPVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDGFSGNSRF 807
Query: 741 TSAQAAGN----SGPCG---DIPFVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLNPFE 793
+ + A GN S P D+ ++DPAIL VG+G + N D R N +
Sbjct: 808 SDSIAYGNHYQQSLPIENVRDVQYMDPAILAVGQGFE-----NASLDFRSNFQGNTNMYG 862
Query: 794 HEARLQLLMQQSSSGYQNLRFQDYPMNRFSPP--SDTYGISSKVLNQPQPNNLSSFTQSP 851
A+LQ QQ + QN P++ +D+ G++ + ++Q Q NNL +
Sbjct: 863 SAAKLQ--QQQQQAVMQNPLSMQNPLSSHQNCRFTDSLGMAPRFIDQSQGNNLLT----- 915
Query: 852 AQQYRNAHMSTGHLGSLKGVKSINDLGVSDLMTNGG-IGFNKFIPSY 897
RN + GH L N++ + + N +G +IP Y
Sbjct: 916 ----RNMALPNGHWNGLMS----NEIQTRNRLQNERLVGSTNWIPGY 954
Score = 37 (18.1 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 540 SSLFSEVGFGSYLGKHDSM 558
+SL S +G G YL D +
Sbjct: 509 TSLMSPLGTGHYLEAEDDI 527
>UNIPROTKB|E2QXU6 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 RefSeq:XP_859452.1 Ensembl:ENSCAFT00000005180
GeneID:482708 KEGG:cfa:482708 Uniprot:E2QXU6
Length = 572
Score = 401 (146.2 bits), Expect = 6.3e-36, Sum P(2) = 6.3e-36
Identities = 84/213 (39%), Positives = 132/213 (61%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPP 182
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++ +++ + N L
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---QELYKLNPNFLQL 254
Query: 183 PADEYI-NSN-ITSTAKPIAKNSSNI-IENPNN 212
N N +T PI K S ++ I N +N
Sbjct: 255 STGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDN 287
Score = 49 (22.3 bits), Expect = 6.3e-36, Sum P(2) = 6.3e-36
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 288 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 328
>UNIPROTKB|I3LC53 [details] [associations]
symbol:LOC100622832 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FP015781
Ensembl:ENSSSCT00000029334 OMA:GKFGKIQ Uniprot:I3LC53
Length = 304
Score = 391 (142.7 bits), Expect = 2.9e-35, P = 2.9e-35
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
>UNIPROTKB|E1C4B3 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:AADN02005991
EMBL:AADN02005992 IPI:IPI00822866 Ensembl:ENSGALT00000038170
ArrayExpress:E1C4B3 Uniprot:E1C4B3
Length = 765
Score = 410 (149.4 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
Identities = 98/316 (31%), Positives = 160/316 (50%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPP 182
+++NM C PDC+YLH+ G + SFTK+E+ + F + +++ + N L
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAIFAGKHQEYEQKLLQELYKLNPNFLQL 257
Query: 183 PADEYI-NSN-ITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVSATL 240
N N +T+ +P + N ++ A+ + + P
Sbjct: 258 STGTVDKNKNKVTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKTPPILENGTDSEHMT 317
Query: 241 PTNKNLS-GPVRPPSNQPKASNGP---QVPGTEVVSTTISIQTVQPMEAVATSKVHHKLD 296
P + GP+ PS+ NG Q+ ++ S + P+ +++S H
Sbjct: 318 PDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNPVIPISSSN-HSARS 376
Query: 297 PLELGKEYIDALSSTN 312
P E +L S N
Sbjct: 377 PFEGAVTESQSLFSDN 392
Score = 48 (22.0 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
Identities = 46/196 (23%), Positives = 75/196 (38%)
Query: 556 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSLTS--P---YSFAKLLRESNRQHDS 610
D + P HS + S S + SL+ W+D L + P SF L S+ + +
Sbjct: 577 DLNLQPQHSTGLGGIPISDNSSSVESLNMKEWQDGLRALLPNINISFGGLPNASSPSNAN 636
Query: 611 LKMP-SLFKESDCRQ--SRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKD 667
+P S +D S S+ + + +SL ++ D +P P+ L K+
Sbjct: 637 HSVPTSNTATTDSLNWDSSGSWMDPAIITGIPASTGNSLDTLQ---DDNP-PHWL-KSLQ 691
Query: 668 IFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTM 727
T+ N G+ + + S P S PP +PPPGF T
Sbjct: 692 ALTEV-DGPSAAPSQTHHSNPFGTQIPLHRA-SWNPYS-PPSNPTSFHSPPPGFQ---TA 745
Query: 728 QKPFDSSASHLRWTSA 743
+P + + L +SA
Sbjct: 746 FRPPSKTPTDLLQSSA 761
>UNIPROTKB|Q5ZJC9 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 EMBL:AADN02005991
EMBL:AADN02005992 EMBL:AJ720505 IPI:IPI00580995
RefSeq:NP_001012829.1 UniGene:Gga.6842 SMR:Q5ZJC9 STRING:Q5ZJC9
Ensembl:ENSGALT00000019099 GeneID:417936 KEGG:gga:417936
NextBio:20821166 Uniprot:Q5ZJC9
Length = 762
Score = 407 (148.3 bits), Expect = 9.7e-35, Sum P(2) = 9.7e-35
Identities = 96/314 (30%), Positives = 160/314 (50%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPP 182
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++ ++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYKLNPNFLQLSTG 257
Query: 183 PADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVSATLPT 242
D+ N +T+ +P + N ++ A+ + + P P
Sbjct: 258 TVDKNKNK-VTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKTPPILENGTDSEHMTPD 316
Query: 243 NKNLS-GPVRPPSNQPKASNGP---QVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPL 298
+ GP+ PS+ NG Q+ ++ S + P+ +++S H P
Sbjct: 317 GADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNPVIPISSSN-HSARSPF 375
Query: 299 ELGKEYIDALSSTN 312
E +L S N
Sbjct: 376 EGAVTESQSLFSDN 389
Score = 48 (22.0 bits), Expect = 9.7e-35, Sum P(2) = 9.7e-35
Identities = 46/196 (23%), Positives = 75/196 (38%)
Query: 556 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSLTS--P---YSFAKLLRESNRQHDS 610
D + P HS + S S + SL+ W+D L + P SF L S+ + +
Sbjct: 574 DLNLQPQHSTGLGGIPISDNSSSVESLNMKEWQDGLRALLPNINISFGGLPNASSPSNAN 633
Query: 611 LKMP-SLFKESDCRQ--SRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKD 667
+P S +D S S+ + + +SL ++ D +P P+ L K+
Sbjct: 634 HSVPTSNTATTDSLNWDSSGSWMDPAIITGIPASTGNSLDTLQ---DDNP-PHWL-KSLQ 688
Query: 668 IFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTM 727
T+ N G+ + + S P S PP +PPPGF T
Sbjct: 689 ALTEV-DGPSAAPSQTHHSNPFGTQIPLHRA-SWNPYS-PPSNPTSFHSPPPGFQ---TA 742
Query: 728 QKPFDSSASHLRWTSA 743
+P + + L +SA
Sbjct: 743 FRPPSKTPTDLLQSSA 758
>UNIPROTKB|E2QXU8 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 GeneID:482708 KEGG:cfa:482708 RefSeq:XP_859650.1
Ensembl:ENSCAFT00000005176 OMA:KCRICPT NextBio:20857244
Uniprot:E2QXU8
Length = 710
Score = 401 (146.2 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 84/213 (39%), Positives = 132/213 (61%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPP 182
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++ +++ + N L
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---QELYKLNPNFLQL 254
Query: 183 PADEYI-NSN-ITSTAKPIAKNSSNI-IENPNN 212
N N +T PI K S ++ I N +N
Sbjct: 255 STGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDN 287
Score = 49 (22.3 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 288 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 328
Score = 48 (22.0 bits), Expect = 3.9e-34, Sum P(3) = 3.9e-34
Identities = 39/150 (26%), Positives = 62/150 (41%)
Query: 198 PIAKNSSNIIENPNNGSCADIVAGKSNSLPTA-ASWVMRVSATLPTNKNLSGPVRPPSNQ 256
PIA NSS++ E+ N D G LP ++ +++ P+N N S P P+
Sbjct: 537 PIADNSSSV-ESLNMKEWQD---GLRALLPNININFGGLPNSSSPSNANHSAPTSNPATT 592
Query: 257 PKAS-NGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLELGKEYID----ALSST 311
S + P + T I + ++++ H L L+ E +D A S T
Sbjct: 593 DSLSWDSPGSWTDPAIITGIPATSGNSLDSLQDDNPPHWLKSLQALTE-MDGPSAAPSQT 651
Query: 312 NEEATLDS-IPATATS-NQYITCRPTSKSS 339
+ A + IP S N Y P++ SS
Sbjct: 652 HHSAPFSTQIPLHRASWNPYPP--PSNPSS 679
Score = 43 (20.2 bits), Expect = 9.1e-34, Sum P(2) = 9.1e-34
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 237 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 267
S +P ++ P PPSN P + + P PG
Sbjct: 658 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 686
Score = 42 (19.8 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 34/129 (26%), Positives = 51/129 (39%)
Query: 733 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 790
S+A+H TS A +S D P + DPAI+ G+ A N+L P L
Sbjct: 578 SNANHSAPTSNPATTDS-LSWDSPGSWTDPAIIT---GIPATSGNSLDSLQDDNPPHWLK 633
Query: 791 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 849
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 634 SLQALTEMDGPSAAPSQTHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 681
Query: 850 SPAQQYRNA 858
SP ++ A
Sbjct: 682 SPPPGFQTA 690
Score = 39 (18.8 bits), Expect = 3.9e-34, Sum P(3) = 3.9e-34
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 705 SVPPGFAVPNRAPPPGFSPHGTMQ 728
S PPGF R PP +P +Q
Sbjct: 682 SPPPGFQTAFR--PPSKTPTDLLQ 703
Score = 38 (18.4 bits), Expect = 4.9e-34, Sum P(3) = 4.9e-34
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 707 PPGFAVPNRAPPPGF 721
PP +PPPGF
Sbjct: 673 PPSNPSSFHSPPPGF 687
Score = 38 (18.4 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 556 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 591
D + P H+ + + S + SL+ W+D L
Sbjct: 522 DLNLPPQHNTGLGGIPIADNSSSVESLNMKEWQDGL 557
>MGI|MGI:1859026 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
MGI:MGI:1859026 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0051865
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043 EMBL:U71269
EMBL:AK009234 EMBL:AK028190 EMBL:AK032248 EMBL:BC058778
IPI:IPI00130086 IPI:IPI00410929 IPI:IPI00410930
RefSeq:NP_001157883.1 RefSeq:NP_001157885.1 RefSeq:NP_058573.3
UniGene:Mm.214525 UniGene:Mm.398182 PDB:2CPI PDBsum:2CPI
ProteinModelPortal:Q8BT14 SMR:Q8BT14 STRING:Q8BT14
PhosphoSite:Q8BT14 PaxDb:Q8BT14 PRIDE:Q8BT14
Ensembl:ENSMUST00000044163 Ensembl:ENSMUST00000114993 GeneID:53621
KEGG:mmu:53621 UCSC:uc009bid.2 UCSC:uc009big.2
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 ChiTaRS:CNOT4
EvolutionaryTrace:Q8BT14 NextBio:310353 Bgee:Q8BT14
CleanEx:MM_CNOT4 Genevestigator:Q8BT14
GermOnline:ENSMUSG00000038784 Uniprot:Q8BT14
Length = 575
Score = 391 (142.7 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 38 (18.4 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 538 QHSSLFSEVGFGSYLGKHDSMVAPLHS 564
QH ++++ GF ++ M P +S
Sbjct: 481 QHRAVYNSFGFPGQAARYPWMAFPRNS 507
>UNIPROTKB|D4ADF8 [details] [associations]
symbol:Cnot4 "RCG28297" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 RGD:1310318 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 IPI:IPI00373484 UniGene:Rn.203387
Ensembl:ENSRNOT00000014392 Uniprot:D4ADF8
Length = 575
Score = 391 (142.7 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 38 (18.4 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 538 QHSSLFSEVGFGSYLGKHDSMVAPLHS 564
QH ++++ GF ++ M P +S
Sbjct: 481 QHRAVYNSFGFPGQAARYPWMAFPRNS 507
>UNIPROTKB|O95628 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051865 "protein autoubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0051865 GO:GO:0000289 EMBL:U71267 EMBL:U71268
EMBL:AF180475 EMBL:AL389980 EMBL:AK074671 EMBL:AK300365
EMBL:AC083871 EMBL:AC074002 EMBL:BC035590 EMBL:AF091094
IPI:IPI00002436 IPI:IPI00410681 IPI:IPI00410682 IPI:IPI00410683
IPI:IPI00410684 IPI:IPI00410685 IPI:IPI00410686 IPI:IPI00925697
IPI:IPI01026266 RefSeq:NP_001008226.1 RefSeq:NP_001177776.1
RefSeq:NP_001177777.1 RefSeq:NP_001177779.1 RefSeq:NP_037448.2
UniGene:Hs.490224 PDB:1E4U PDB:1UR6 PDBsum:1E4U PDBsum:1UR6
ProteinModelPortal:O95628 SMR:O95628 IntAct:O95628 STRING:O95628
PhosphoSite:O95628 PaxDb:O95628 PRIDE:O95628
Ensembl:ENST00000315544 Ensembl:ENST00000356162
Ensembl:ENST00000361528 Ensembl:ENST00000414802
Ensembl:ENST00000423368 Ensembl:ENST00000428680
Ensembl:ENST00000451834 GeneID:4850 KEGG:hsa:4850 UCSC:uc003vss.3
UCSC:uc003vst.3 UCSC:uc003vsu.2 UCSC:uc003vsv.2 CTD:4850
GeneCards:GC07M135046 H-InvDB:HIX0007112 HGNC:HGNC:7880
HPA:HPA005737 MIM:604911 neXtProt:NX_O95628 PharmGKB:PA26675
eggNOG:COG5175 HOVERGEN:HBG051043 EvolutionaryTrace:O95628
GenomeRNAi:4850 NextBio:18678 ArrayExpress:O95628 Bgee:O95628
CleanEx:HS_CNOT4 Genevestigator:O95628 GermOnline:ENSG00000080802
Uniprot:O95628
Length = 575
Score = 391 (142.7 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
>RGD|1310318 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0051865 "protein
autoubiquitination" evidence=ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
HOGENOM:HOG000065696 UniGene:Rn.203387 IPI:IPI00565508
EMBL:BC100152 RefSeq:NP_001032871.1 ProteinModelPortal:Q498M7
SMR:Q498M7 STRING:Q498M7 GeneID:312227 KEGG:rno:312227
UCSC:RGD:1310318 InParanoid:Q498M7 OrthoDB:EOG43BMNB NextBio:664680
Genevestigator:Q498M7 Uniprot:Q498M7
Length = 710
Score = 401 (146.2 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 84/213 (39%), Positives = 132/213 (61%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALPP 182
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++ +++ + N L
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---QELYKLNPNFLQL 254
Query: 183 PADEYI-NSN-ITSTAKPIAKNSSNI-IENPNN 212
N N +T PI K S ++ I N +N
Sbjct: 255 STGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDN 287
Score = 49 (22.3 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 288 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 328
Score = 43 (20.2 bits), Expect = 5.7e-34, Sum P(4) = 5.7e-34
Identities = 23/91 (25%), Positives = 33/91 (36%)
Query: 388 LESQFEKDRSLPVVPNSSISKHVSVNLPGSHGPQEEKSGQFTECKSFQASMAAP----TM 443
L+S +K + N S+ +S + S P KS S S +P
Sbjct: 269 LQSPIDKPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPFEGAVT 328
Query: 444 EDSPDFDDLQFKGLEDMHH-LPPISSTPHLP 473
E F D F+ + LPP S+P P
Sbjct: 329 ESQSLFSD-NFRHPNPIPSGLPPFPSSPQTP 358
Score = 43 (20.2 bits), Expect = 9.1e-34, Sum P(2) = 9.1e-34
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 237 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 267
S +P ++ P PPSN P + + P PG
Sbjct: 658 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 686
Score = 41 (19.5 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 34/129 (26%), Positives = 50/129 (38%)
Query: 733 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 790
S+A+H TS A +S D P + DPAI+ G+ A N L P L
Sbjct: 578 SNANHSAPTSNTATTDS-VSWDSPGSWTDPAIIT---GIPASSGNTLDSIQDDNPPHWLK 633
Query: 791 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 849
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 634 SLQALTEVDGPSAASPQPHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 681
Query: 850 SPAQQYRNA 858
SP ++ A
Sbjct: 682 SPPPGFQTA 690
Score = 39 (18.8 bits), Expect = 9.2e-34, Sum P(4) = 9.2e-34
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 705 SVPPGFAVPNRAPPPGFSPHGTMQ 728
S PPGF R PP +P +Q
Sbjct: 682 SPPPGFQTAFR--PPSKTPTDLLQ 703
Score = 38 (18.4 bits), Expect = 5.7e-34, Sum P(4) = 5.7e-34
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 538 QHSSLFSEVGFGSYLGKHDSMVAPLHS 564
QH ++++ GF ++ M P +S
Sbjct: 478 QHRAVYNSFGFPGQAARYPWMAFPRNS 504
Score = 38 (18.4 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 707 PPGFAVPNRAPPPGF 721
PP +PPPGF
Sbjct: 673 PPSNPSSFHSPPPGF 687
Score = 37 (18.1 bits), Expect = 7.3e-34, Sum P(4) = 7.3e-34
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 556 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 591
D + P H+ + + S + SL+ W+D L
Sbjct: 522 DLNLPPQHNTGLGGIPIADNNSSVESLNMKEWQDGL 557
>FB|FBgn0051716 [details] [associations]
symbol:Cnot4 "Cnot 4 homologue" species:7227 "Drosophila
melanogaster" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0046425 "regulation of JAK-STAT cascade"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
EMBL:AE014134 GO:GO:0051297 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000000068
GO:GO:0046425 HSSP:O95628 UniGene:Dm.18584 GeneID:34416
KEGG:dme:Dmel_CG31716 FlyBase:FBgn0051716 GenomeRNAi:34416
NextBio:788389 EMBL:BT003543 RefSeq:NP_723578.1 RefSeq:NP_723579.1
RefSeq:NP_723580.1 RefSeq:NP_723581.1 RefSeq:NP_723582.1 SMR:Q9VKX1
MINT:MINT-965323 STRING:Q9VKX1 EnsemblMetazoa:FBtr0080009
EnsemblMetazoa:FBtr0080010 EnsemblMetazoa:FBtr0080011
EnsemblMetazoa:FBtr0080012 EnsemblMetazoa:FBtr0080013
UCSC:CG31716-RA InParanoid:Q9VKX1 Uniprot:Q9VKX1
Length = 1051
Score = 396 (144.5 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 115/349 (32%), Positives = 177/349 (50%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
S++RQ+ Q+ K K +E R HL NVRV+Q+NLV+++GLP LAD D+L++ EYFG+YGK+
Sbjct: 79 SQKRQRDQQRKQKITENRKHLANVRVVQKNLVFVVGLPPRLADADILKKHEYFGKYGKIH 138
Query: 63 KVSISRTAT-GDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYC 121
KV I+ + T +Q S Y+TY DA+R IQSV++ ++DGR ++ GTTKYC
Sbjct: 139 KVVINPSTTYAGVQ---GPSASAYVTYVNNSDALRAIQSVNNIMIDGRLIKTSLGTTKYC 195
Query: 122 HAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALP 181
+++N C DC+YLH+ G E SFTK+E+ + + +H +L
Sbjct: 196 SHFMKNQQCPKGDCMYLHELGDPEASFTKEEMHQG-------KHLEYEKRLHDTLIASLG 248
Query: 182 PPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPT-AASWV----MRV 236
P A +N I S++ A +SS+ + NGS A A + + P+ + S +
Sbjct: 249 PNATGIVNVAIPSSSS--ASSSSS--GSGTNGSSASGNAQQKEAWPSLSVSPINGKEAAA 304
Query: 237 SATLPTNKN----LSGPVRPPSNQPKASNGPQVPGTE------VVSTTISIQTVQPMEAV 286
+AT + K+ L R N+ K NG V T S T EA
Sbjct: 305 TATSSSGKSKREKLRNEKRHEKNKAKNKNGSNTNANASNKENYVPETRSSTSTETFAEAT 364
Query: 287 ATSKVHHKLDP---------LELGKEYIDALSSTNEEATLDSIPATATS 326
A + K +P + GK+ A S+ ++ + ++ PA A S
Sbjct: 365 ADAPASTKAEPPQASSNRTRADRGKDRTTA-SAKEQKKSKEAAPAPAAS 412
Score = 60 (26.2 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 46/157 (29%), Positives = 64/157 (40%)
Query: 715 RAPPPGFSPHGTMQKPFDSSASHLRWTSAQAAGNSGPCGDIPFVDPAILEVGK-GLQA-- 771
R PPPGF+ T+ AS L+ TS IPF++ + VG G Q
Sbjct: 872 RMPPPGFNHVNTLGL---GGASRLQLTSKI----------IPFMNMPVNGVGNSGAQGQH 918
Query: 772 ---IGLN-NLGCDMRQTPS-----SQL-NPFEHEARLQLLMQQSSSGYQNLRFQDY---P 818
+G+N N M Q P SQL +P H ++ +S L F+ Y P
Sbjct: 919 QMPMGVNWNAPMGMHQNPGQPVGDSQLQHPMAHN-KVYNNSDWTSMDPAILSFRQYSSFP 977
Query: 819 MNRFSP-PSDTYGISSKVLNQPQPNNLSSFTQSPAQQ 854
N+ P P + + L Q Q N+ S + AQQ
Sbjct: 978 QNQIPPHPQQQQDLFLQHLAQQQ-NSQSGGFNNQAQQ 1013
Score = 44 (20.5 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 799 QLLMQQSSSGYQNLRFQ 815
QLL QQ +QNLR Q
Sbjct: 637 QLLQQQHLQQHQNLRHQ 653
Score = 40 (19.1 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 742 SAQAAGNSGPCGDIPFVDP----AILEVGKGL-QAIGLNNLGCDMRQ---TPSSQLNPFE 793
+A A GN G +P VDP ++ + G + A+ N+ D +PS Q P
Sbjct: 528 AAVAPGNGEVEGCLPVVDPVEPPSLADNGSRVTDALSKLNIFDDTPSFFTSPSFQQAPIL 587
Query: 794 HEARLQLLMQQS 805
+L L M+QS
Sbjct: 588 KN-KLDLEMRQS 598
>ZFIN|ZDB-GENE-090313-262 [details] [associations]
symbol:si:dkey-230e6.2 "si:dkey-230e6.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00184 SMART:SM00360
ZFIN:ZDB-GENE-090313-262 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
EMBL:CABZ01070060 EMBL:CR387984 IPI:IPI00487935 RefSeq:XP_697509.2
Ensembl:ENSDART00000034714 GeneID:569055 KEGG:dre:569055
NextBio:20889484 Uniprot:E7F2Q8
Length = 772
Score = 392 (143.0 bits), Expect = 8.4e-34, Sum P(4) = 8.4e-34
Identities = 81/204 (39%), Positives = 128/204 (62%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K +E R HL +VRV+QRNLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKLNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRLADAEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ I+DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVIVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGN-ALP 181
++++M C PDC+YLH+ G + SFTK+E+ + + Q+++ ++++ + L
Sbjct: 198 YFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL---QDLYKANPTFLLT 254
Query: 182 PPADEYINSNITSTAKPIAKNSSN 205
E S ST +P NS+N
Sbjct: 255 STCGEKSKSKSNSTQRP---NSTN 275
Score = 52 (23.4 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 689 LGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
+G+ IS + S S PPG P+ P + T + PF+ +A+
Sbjct: 351 IGNGENISQTSSSDSPSPPPGLTKPSLVVPISVAEL-TARSPFEGAAA 397
Score = 47 (21.6 bits), Expect = 8.4e-34, Sum P(4) = 8.4e-34
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 706 VPPGFAVPNR--APPPGF 721
+PP PN+ +PPPGF
Sbjct: 732 LPPPTLTPNQFHSPPPGF 749
Score = 46 (21.3 bits), Expect = 8.4e-34, Sum P(4) = 8.4e-34
Identities = 39/161 (24%), Positives = 58/161 (36%)
Query: 434 FQASMAAPTMEDSPDFD--DLQFKGLEDMHHLPPISSTPHLPHNLNQSSYLSWQAGDVSN 491
F +S +D FD D+ K L D+ +S H P + N SS+ Q G +
Sbjct: 461 FGSSAKQQQQDDDLGFDPFDVTRKALADLIE-KELSVQEHSPLSPNPSSH---QTGLPNG 516
Query: 492 QSNLDGHSGNVPLEHKEVLPSR-SENLISNGFITNEASSFFNLDATVQHSSLFSEVGFGS 550
Q H + L + LP + G T + N AT S F ++
Sbjct: 517 QQRFP-HLQHRGLYNSFSLPQHMAARHPWMGIPTRNNLTHLNHTATAAAHSHFLDL---- 571
Query: 551 YLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 591
SM A HS + S + S++ W+D L
Sbjct: 572 ------SMPAQHHSTGLGGIPISENNGSVESINVKEWQDGL 606
Score = 43 (20.2 bits), Expect = 8.4e-34, Sum P(4) = 8.4e-34
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 243 NKNLSGPVRPPSNQPKASNGPQ 264
N N P PS P SN PQ
Sbjct: 406 NSNFRHPNPIPSGLPPFSNSPQ 427
Score = 41 (19.5 bits), Expect = 2.7e-33, Sum P(4) = 2.7e-33
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 444 EDSPDFDDLQFKGLEDMHHLPPISSTPHLPHN--LNQSSYLS 483
+D+P + L +M P S+ P PH L+ +++LS
Sbjct: 681 DDNPPHWLKSLQALTEMDGPPSSSALPQPPHTGLLDAAAHLS 722
Score = 40 (19.1 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 24/92 (26%), Positives = 37/92 (40%)
Query: 790 NPFEHEA-RLQLLMQQSSSGYQNLRFQDYPMNRFSPP--SDTYGISSKVLNQPQPNNLSS 846
+PFE A Q L +S N R + P+ PP + G S + P+P +L +
Sbjct: 390 SPFEGAAAESQSLFSDNS----NFRHPN-PIPSGLPPFSNSPQGASDWPMT-PEPQSLFT 443
Query: 847 FTQSPAQQYRNAHMSTGHLGSLKGVKSINDLG 878
P + + G S K + +DLG
Sbjct: 444 SETIPVSSSTDWQAAFGFGSSAKQQQQDDDLG 475
Score = 37 (18.1 bits), Expect = 2.2e-32, Sum P(3) = 2.2e-32
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 570 VGESSIISKILSLDADA-----WEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKES 620
+G IS+ S D+ + + SL P S A+L S + + + SLF ++
Sbjct: 351 IGNGENISQTSSSDSPSPPPGLTKPSLVVPISVAELTARSPFEGAAAESQSLFSDN 406
>ZFIN|ZDB-GENE-040426-1164 [details] [associations]
symbol:zgc:63566 "zgc:63566" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 ZFIN:ZDB-GENE-040426-1164 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 HOVERGEN:HBG051043 HSSP:O95628
EMBL:BC054913 IPI:IPI00507902 RefSeq:NP_957463.1 UniGene:Dr.79144
ProteinModelPortal:Q7SYD1 SMR:Q7SYD1 STRING:Q7SYD1 GeneID:394144
KEGG:dre:394144 InParanoid:Q7SYD1 NextBio:20815095
ArrayExpress:Q7SYD1 Uniprot:Q7SYD1
Length = 798
Score = 387 (141.3 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 71/164 (43%), Positives = 113/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K +E R HL++VRV+QRNLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKITENRKHLSSVRVVQRNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
++++M C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 51 (23.0 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 25/104 (24%), Positives = 43/104 (41%)
Query: 242 TNKNLSGPVRPPSNQPKASNGP-QVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDPLEL 300
TN N + K+ +G Q + S+QT M + HHK PL+
Sbjct: 247 TNPNFLQSSTGTGEKTKSKSGTSQSSNSNSKEAWPSLQTTGKMPNGLSE--HHKTPPLDG 304
Query: 301 GKEYI----DALSSTNEEATLDSIPATATSNQYITCRPTSKSSE 340
G + D L S ++ +P+ ++ + ++ PTSK S+
Sbjct: 305 GSDSENMTPDGLDSDLGLGSITGLPSFTSNCEPVS--PTSKPSD 346
Score = 50 (22.7 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 22/91 (24%), Positives = 35/91 (38%)
Query: 396 RSLPVVPNSSISKHVSVNLPGSHGP-QEEKSGQFTECKSFQASMAAPTMEDSPDFDDLQF 454
+S PV+P+ + + N P P Q S F S S + ++ F
Sbjct: 502 KSAPVMPHGPLLGPLH-NAPSMKSPLQPPTSSHFAPNSSLP-SRGFSHLPHRTVYNSFSF 559
Query: 455 KG-LEDMHH----LPPISSTPHLPHNLNQSS 480
G + H +P ++ PHL H+ SS
Sbjct: 560 PGQAQSSRHSWMGMPMRNNLPHLNHSTGPSS 590
Score = 42 (19.8 bits), Expect = 9.3e-34, Sum P(4) = 9.3e-34
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 700 SKAPTSVPPGFAVPNRAPPPGF 721
S PT+ A +PPPGF
Sbjct: 754 SPYPTTATANPATQFHSPPPGF 775
Score = 41 (19.5 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 14/56 (25%), Positives = 18/56 (32%)
Query: 806 SSGYQNLRFQDYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQSPAQQYRNAHMS 861
S G+ +L + N FS P + P NNL S H S
Sbjct: 542 SRGFSHLPHRTV-YNSFSFPGQAQSSRHSWMGMPMRNNLPHLNHSTGPSSAAQHSS 596
Score = 38 (18.4 bits), Expect = 2.4e-33, Sum P(4) = 2.4e-33
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 703 PTSVPPGFAVPNRAPPPGFSPHGT 726
P S P G P+RA G+SP+ T
Sbjct: 738 PHSGPFGAQFPHRA---GWSPYPT 758
>UNIPROTKB|F1MWA7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:DAAA02011636
EMBL:DAAA02011637 EMBL:DAAA02011638 EMBL:DAAA02011639
IPI:IPI00708734 UniGene:Bt.26972 Ensembl:ENSBTAT00000023825
Uniprot:F1MWA7
Length = 642
Score = 391 (142.7 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 172 MHRRSGNALPPPAD 185
+HR S N PPP++
Sbjct: 595 LHRASWNPYPPPSN 608
Score = 43 (20.2 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 237 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 267
S +P ++ P PPSN P + + P PG
Sbjct: 590 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 618
Score = 39 (18.8 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 705 SVPPGFAVPNRAPPPGFSPHGTMQ 728
S PPGF R PP +P +Q
Sbjct: 614 SPPPGFQTAFR--PPSKTPTDLLQ 635
Score = 38 (18.4 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 707 PPGFAVPNRAPPPGF 721
PP +PPPGF
Sbjct: 605 PPSNPSSFHSPPPGF 619
Score = 37 (18.1 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 839 PQPNNLSSFTQSPAQQYRNA 858
P P+N SSF SP ++ A
Sbjct: 604 PPPSNPSSF-HSPPPGFQTA 622
>UNIPROTKB|E2QXU7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 EMBL:AAEX03010245
Ensembl:ENSCAFT00000005178 Uniprot:E2QXU7
Length = 642
Score = 391 (142.7 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 172 MHRRSGNALPPPAD 185
+HR S N PPP++
Sbjct: 595 LHRASWNPYPPPSN 608
Score = 43 (20.2 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 237 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 267
S +P ++ P PPSN P + + P PG
Sbjct: 590 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 618
Score = 39 (18.8 bits), Expect = 4.8e-33, Sum P(3) = 4.8e-33
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 705 SVPPGFAVPNRAPPPGFSPHGTMQ 728
S PPGF R PP +P +Q
Sbjct: 614 SPPPGFQTAFR--PPSKTPTDLLQ 635
Score = 38 (18.4 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 707 PPGFAVPNRAPPPGF 721
PP +PPPGF
Sbjct: 605 PPSNPSSFHSPPPGF 619
Score = 37 (18.1 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 839 PQPNNLSSFTQSPAQQYRNA 858
P P+N SSF SP ++ A
Sbjct: 604 PPPSNPSSF-HSPPPGFQTA 622
>DICTYBASE|DDB_G0275005 [details] [associations]
symbol:DDB_G0275005 "putative CCR4-NOT complex
subunit 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030015 "CCR4-NOT
core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50102
SMART:SM00184 SMART:SM00360 dictyBase:DDB_G0275005 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000012 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_644313.1
ProteinModelPortal:Q554L0 SMR:Q554L0 EnsemblProtists:DDB0237630
GeneID:8619741 KEGG:ddi:DDB_G0275005 OMA:QEHPHLP Uniprot:Q554L0
Length = 1486
Score = 371 (135.7 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 90/252 (35%), Positives = 142/252 (56%)
Query: 19 GRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSA 78
G L VRVIQRNLVY+ L I++A ++L++ EYF QYGK+LK+ I+R ++ +S
Sbjct: 108 GDKPLNTVRVIQRNLVYVTNLAISIAKPEILKKNEYFAQYGKILKIVINRNNIYNL-NSP 166
Query: 79 NNSCC-VYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLY 137
+ +C YITY+R++DA+ IQ++ ++GR LRA FGTTKYC ++R +PC+ PDC+Y
Sbjct: 167 HGACVSAYITYARKEDALVAIQTIDGATIEGRVLRASFGTTKYCSYFLRKLPCNNPDCMY 226
Query: 138 LHDFGSQEDSFTKDEIVS-AFTRSRVQQIIGATNNMHRRSGNALPPPADEYINSNITSTA 196
LH+ G ++DS+TK++I S A + + Q S L P+ ++S+ TS+
Sbjct: 227 LHELGQEDDSYTKEDITSTAVYKPKPTQ---QPTPWKESSEKVLASPS---LSSS-TSST 279
Query: 197 KPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQ 256
++ +SS N +N S + P+A A LP+ + PP +
Sbjct: 280 NNMSNSSSFKTWNISNVSPQPVTVLNPLEWPSATDASSMAPAILPSGSS------PPLS- 332
Query: 257 PKASNGPQVPGT 268
K+ P +P T
Sbjct: 333 -KSQERPFLPAT 343
Score = 64 (27.6 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 31/123 (25%), Positives = 56/123 (45%)
Query: 423 EKSGQFTECKSFQASMAAPTMEDSPDFDDLQFKGLEDMHHL----PPISSTPHLPHNLNQ 478
+ +G + + AS+ P M S + Q L +HH P ++S + ++LN
Sbjct: 789 DTTGSLSSSTNNTASLITPDMFFSIQSEQYQLPTLSSLHHPNGVEPTLNSQSIIENSLNL 848
Query: 479 SSY----LSWQAGDVSNQSNLDGHSG-NVPLEHKEVLPSRSENLISNGF---ITNEASS- 529
+ L+ +++NQ+N +SG N + + + + + N +N F I NE SS
Sbjct: 849 NLVGNRSLNNSQNNINNQTNSLNNSGSNNLIFNNDYNNNNNNNNNNNSFSNNIENEDSSQ 908
Query: 530 -FF 531
FF
Sbjct: 909 QFF 911
Score = 62 (26.9 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 702 APTSVPPGFAVPNRAPPPGF 721
APT PPGF N PPPGF
Sbjct: 1084 APTPPPPGFQ--NIIPPPGF 1101
Score = 60 (26.2 bits), Expect = 6.4e-33, Sum P(5) = 6.4e-33
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 459 DMHHLPPISSTPHLPHNLNQSSYLSWQAGDVSN--QSNLDGHSGNVPLEHKEVLPSRSEN 516
+M+ PP+ S+ SS ++Q + N +SN DG+S + + L + + N
Sbjct: 985 NMNDFPPLESSG--------SSIKTFQDPAIVNSYKSNGDGNSVWKVIPNNNPLNNSNSN 1036
Query: 517 LISNGFITNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAP 561
+ N N ++ NL +V SS+ GFG + MV P
Sbjct: 1037 IYGNNNNNNNSNGNLNLRKSVT-SSVSPPPGFGGF-DSQKPMVNP 1079
Score = 54 (24.1 bits), Expect = 3.6e-30, Sum P(4) = 3.6e-30
Identities = 23/103 (22%), Positives = 45/103 (43%)
Query: 400 VVPNSSISKHVSVNLPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDFDDLQFKGLED 459
V+PN++ + + N+ G++ +G KS +S++ P P F F +
Sbjct: 1023 VIPNNNPLNNSNSNIYGNNNNNNNSNGNLNLRKSVTSSVSPP-----PGFGG--FDSQKP 1075
Query: 460 MHHLPP-ISSTPHLPHNLNQSSYLSWQAGDVSNQSNLDGHSGN 501
M + PP + TP P N +Q+ + + +N + + N
Sbjct: 1076 MVNPPPGFAPTPPPPGFQNIIPPPGFQSNNNTTTTNNNNSTNN 1118
Score = 53 (23.7 bits), Expect = 2.1e-32, Sum P(5) = 2.1e-32
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 662 LLKNKDIFTDKHQNAFXXXXXXXXXNF-LGSHSFISSSVSKAPTSVPPGFA-----VPNR 715
++ N + + + N + N L ++SSVS P PPGF P
Sbjct: 1023 VIPNNNPLNNSNSNIYGNNNNNNNSNGNLNLRKSVTSSVS--P---PPGFGGFDSQKPMV 1077
Query: 716 APPPGFSP 723
PPPGF+P
Sbjct: 1078 NPPPGFAP 1085
Score = 48 (22.0 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 23/113 (20%), Positives = 36/113 (31%)
Query: 797 RLQLLMQQSSSGYQNLRFQDYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQSPAQQYR 856
+LQ+ +QQ Q FQ P + + + Q Q Q QQ +
Sbjct: 1259 QLQMRLQQQQQQQQQ-HFQSQPQQQQQQQQQILHLQQLLQQQQQQQQQQQQQQQQQQQQQ 1317
Query: 857 NAHMSTGHLGSLKGVKSINDLGVSDLMTNGGI-GFNKFIPSYEDLKCQMSNSS 908
S +L + N + S I N F + + Q N+S
Sbjct: 1318 QQQPSKDNLF----LPQFNGMSNSPQQQQNNIFNMNSFYQQQQQQQAQKQNNS 1366
Score = 44 (20.5 bits), Expect = 2.5e-33, Sum P(5) = 2.5e-33
Identities = 17/79 (21%), Positives = 35/79 (44%)
Query: 732 DSSASHLRWTSAQAAGNSG-PCGDIPFVDPA-ILEVGKGLQAIGLNNL-GCDMRQTPSSQ 788
++S+S + + N+G G PFVDP+ + + + + N+ D ++ Q
Sbjct: 1129 NNSSSTINGNQLLSMVNNGLMSGPTPFVDPSNLFDSQYDNDMLAMENIKNKDKKKNKEEQ 1188
Query: 789 LNP---FEHEARLQLLMQQ 804
+H+ Q ++QQ
Sbjct: 1189 EQEQLQLQHQLHQQQMLQQ 1207
>UNIPROTKB|F1MAD6 [details] [associations]
symbol:Cnot4 "Protein Cnot4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
IPI:IPI00565508 PRIDE:F1MAD6 Ensembl:ENSRNOT00000040969
ArrayExpress:F1MAD6 Uniprot:F1MAD6
Length = 713
Score = 391 (142.7 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 237 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 267
S +P ++ P PPSN P + + P PG
Sbjct: 661 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 689
Score = 43 (20.2 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 172 MHRRSGNALPPPAD 185
+HR S N PPP++
Sbjct: 666 LHRASWNPYPPPSN 679
Score = 41 (19.5 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 34/129 (26%), Positives = 50/129 (38%)
Query: 733 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 790
S+A+H TS A +S D P + DPAI+ G+ A N L P L
Sbjct: 581 SNANHSAPTSNTATTDS-VSWDSPGSWTDPAIIT---GIPASSGNTLDSIQDDNPPHWLK 636
Query: 791 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 849
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 637 SLQALTEVDGPSAASPQPHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 684
Query: 850 SPAQQYRNA 858
SP ++ A
Sbjct: 685 SPPPGFQTA 693
Score = 39 (18.8 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 705 SVPPGFAVPNRAPPPGFSPHGTMQ 728
S PPGF R PP +P +Q
Sbjct: 685 SPPPGFQTAFR--PPSKTPTDLLQ 706
Score = 38 (18.4 bits), Expect = 4.2e-32, Sum P(3) = 4.2e-32
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 538 QHSSLFSEVGFGSYLGKHDSMVAPLHS 564
QH ++++ GF ++ M P +S
Sbjct: 481 QHRAVYNSFGFPGQAARYPWMAFPRNS 507
Score = 38 (18.4 bits), Expect = 8.6e-32, Sum P(3) = 8.6e-32
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 707 PPGFAVPNRAPPPGF 721
PP +PPPGF
Sbjct: 676 PPSNPSSFHSPPPGF 690
Score = 37 (18.1 bits), Expect = 5.3e-32, Sum P(3) = 5.3e-32
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 556 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 591
D + P H+ + + S + SL+ W+D L
Sbjct: 525 DLNLPPQHNTGLGGIPIADNNSSVESLNMKEWQDGL 560
>UNIPROTKB|F8VQP3 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC083871 RefSeq:NP_001177779.1
UniGene:Hs.490224 GeneID:4850 KEGG:hsa:4850 CTD:4850 HGNC:HGNC:7880
GenomeRNAi:4850 NextBio:18678 EMBL:AC009331 IPI:IPI01011519
ProteinModelPortal:F8VQP3 SMR:F8VQP3 Ensembl:ENST00000541284
UCSC:uc011kpy.2 ArrayExpress:F8VQP3 Bgee:F8VQP3 Uniprot:F8VQP3
Length = 713
Score = 391 (142.7 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 72/164 (43%), Positives = 112/164 (68%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL 62
+E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK+
Sbjct: 80 NEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH 139
Query: 63 KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKYC
Sbjct: 140 KVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCS 197
Query: 123 AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
+++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 198 YFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Score = 49 (22.3 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 696 SSSVSKAPT-SVPPGFAVPNRAPPPGFSPHGTMQKPFDSSAS 736
S +S + T S PPG + N P S H + PF+ + +
Sbjct: 291 SQQISNSDTPSPPPGLSKSNPVIPISSSNHSA-RSPFEGAVT 331
Score = 43 (20.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 237 SATLPTNKNLSGPVRPPSNQPKASNGPQVPG 267
S +P ++ P PPSN P + + P PG
Sbjct: 661 STQIPLHRASWNPYPPPSN-PSSFHSPP-PG 689
Score = 43 (20.2 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 172 MHRRSGNALPPPAD 185
+HR S N PPP++
Sbjct: 666 LHRASWNPYPPPSN 679
Score = 41 (19.5 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
Identities = 34/129 (26%), Positives = 51/129 (39%)
Query: 733 SSASHLRWTSAQAAGNSGPCGDIP--FVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLN 790
S+A+H TS A +S D P + DPAI+ G+ A N+L P L
Sbjct: 581 SNANHSAPTSNTATTDS-LSWDSPGSWTDPAIIT---GIPASSGNSLDSLQDDNPPHWLK 636
Query: 791 PFEHEARLQLLMQQSSSGYQNLRFQ-DYPMNRFSPPSDTYGISSKVLNQPQPNNLSSFTQ 849
+ + S + + F P++R S + Y P P+N SSF
Sbjct: 637 SLQALTEMDGPSAAPSQTHHSAPFSTQIPLHRAS--WNPY---------PPPSNPSSF-H 684
Query: 850 SPAQQYRNA 858
SP ++ A
Sbjct: 685 SPPPGFQTA 693
Score = 39 (18.8 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 705 SVPPGFAVPNRAPPPGFSPHGTMQ 728
S PPGF R PP +P +Q
Sbjct: 685 SPPPGFQTAFR--PPSKTPTDLLQ 706
Score = 39 (18.8 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 556 DSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL 591
D + P H+ + + S + SL+ W+D L
Sbjct: 525 DLNLPPQHNTGLGGIPVADNSSSVESLNMKEWQDGL 560
>POMBASE|SPAC16C9.04c [details] [associations]
symbol:mot2 "CCR4-Not complex subunit Mot2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0030015 "CCR4-NOT
core complex" evidence=NAS] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00361 PomBase:SPAC16C9.04c Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006368 GO:GO:0004842 GO:GO:0000289 GO:GO:0030015
eggNOG:COG5175 HOGENOM:HOG000248860 OrthoDB:EOG42RHH7 PIR:T37777
RefSeq:NP_593078.1 ProteinModelPortal:Q09818 SMR:Q09818
STRING:Q09818 PRIDE:Q09818 EnsemblFungi:SPAC16C9.04c.1
GeneID:2542325 KEGG:spo:SPAC16C9.04c NextBio:20803386
Uniprot:Q09818
Length = 489
Score = 370 (135.3 bits), Expect = 5.3e-33, P = 5.3e-33
Identities = 90/258 (34%), Positives = 146/258 (56%)
Query: 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADED---LLQRKEYFGQYG 59
+ER+++ ++ K R HL N+RV+Q+NL Y+ GL +A+E+ +L+ EYFGQYG
Sbjct: 87 NERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPKVANEENINVLKGPEYFGQYG 146
Query: 60 KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK 119
K++K++I++ A + SAN VYITY R++DA R I ++ + DGR LRA +GTTK
Sbjct: 147 KIIKIAINKKAAAN---SANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASYGTTK 203
Query: 120 YCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSA-FTR--SRVQQII-GATNNMHRR 175
YC +++RN C P C+YLH+ G + DS+TK+++ S TR S ++ GAT++
Sbjct: 204 YCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLASLQHTRPLSTKPNVVNGATHS---- 259
Query: 176 SGNALPPPADEYINSNITSTAKPIAK-NSSNIIENPNNGSCADIVAGKSNSLPTAASWVM 234
P P+ + + T P+ + NSS +N + + D V + + P+ ++
Sbjct: 260 -----PSPSLPFKTPLLPVTKTPLEEANSSPAAQNQHI-TTVDHVHPQVSMTPSLSTNNT 313
Query: 235 RVSATLPTNKNLSGPVRP 252
S P + S V P
Sbjct: 314 ATSVPAPYSSAASVNVVP 331
>SGD|S000000870 [details] [associations]
symbol:MOT2 "Ubiquitin-protein ligase subunit of the CCR4-NOT
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000209
"protein polyubiquitination" evidence=IMP;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0016567 "protein ubiquitination" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP;IDA;IPI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00361
SGD:S000000870 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:BK006939
EMBL:U18813 RefSeq:NP_010991.3 GeneID:856799 KEGG:sce:YER068W
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0032968 GO:GO:0030015 eggNOG:COG5175
GeneTree:ENSGT00390000000068 GO:GO:0031087 EMBL:M96736 EMBL:L26309
PIR:A56015 RefSeq:NP_010994.3 ProteinModelPortal:P34909 SMR:P34909
DIP:DIP-2255N IntAct:P34909 MINT:MINT-617490 STRING:P34909
PaxDb:P34909 PeptideAtlas:P34909 EnsemblFungi:YER068W GeneID:856802
KEGG:sce:YER071C CYGD:YER068w HOGENOM:HOG000248860 OMA:DEEDYCP
OrthoDB:EOG42RHH7 NextBio:983041 Genevestigator:P34909
GermOnline:YER068W Uniprot:P34909
Length = 587
Score = 364 (133.2 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 103/351 (29%), Positives = 163/351 (46%)
Query: 4 ERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDL---LQRKEYFGQYGK 60
ER+ + ++ K R HL+ RVIQ+NLVY++G+ + E++ L+ ++YFGQYGK
Sbjct: 109 ERKHREKERKENEYTNRKHLSGTRVIQKNLVYVVGINPPVPYEEVAPTLKSEKYFGQYGK 168
Query: 61 VLKVSISR------TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 114
+ K+ ++R T + H + VYIT+ +DDA RCI V +DGR ++A
Sbjct: 169 INKIVVNRKTPHSNNTTSEHYHHHSPGYGVYITFGSKDDAARCIAQVDGTYMDGRLIKAA 228
Query: 115 FGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGAT----N 170
+GTTKYC +++R +PC P+C++LH+ G + DSF K E+ + + QQ G T +
Sbjct: 229 YGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADSFNKREL---HNKQQAQQQSGGTAFTRS 285
Query: 171 NMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAA 230
+H + ++ N T T P A + ++ N + +P +
Sbjct: 286 GIHNNISTSTAGSNTNLLSENFTGTPSPAAMRAQLHHDSHTNAGTPVLTPAP---VPAGS 342
Query: 231 S-WVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATS 289
+ W + SAT T+ NLS N P ++ T TI+ T ATS
Sbjct: 343 NPWGVTQSATPVTSINLSKN-SSSINLPTLNDSLGHHTTPTTENTIT-STTTTTNTNATS 400
Query: 290 KVHHKLDPLELG-KEYIDALSSTNEEATLDSIPATATSNQYITCRPTSKSS 339
H L +EY D + +D + A S RP S S
Sbjct: 401 HSHGSKKKQSLAAEEYKDPYDALGN--AVDFLDARLHSLSNYQKRPISIKS 449
Score = 45 (20.9 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 818 PMNRFSPPSDTYGISSKV-LNQPQPNNLSSFTQS 850
P+N +PP +G KV + Q Q + SS S
Sbjct: 538 PLNVSTPPPGIFGPQHKVPIQQQQMGDTSSRNSS 571
>WB|WBGene00003827 [details] [associations]
symbol:ntl-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040017 "positive regulation of locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00361
GO:GO:0009792 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0040017 GO:GO:0000003 GO:GO:0003676
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FO080908 HSSP:O95628
GeneID:177580 KEGG:cel:CELE_C49H3.5 UCSC:C49H3.5a CTD:177580
HOGENOM:HOG000021187 NextBio:897454 RefSeq:NP_741453.1
ProteinModelPortal:Q9GYQ9 SMR:Q9GYQ9 DIP:DIP-27225N IntAct:Q9GYQ9
MINT:MINT-1111747 STRING:Q9GYQ9 PRIDE:Q9GYQ9
EnsemblMetazoa:C49H3.5a.1 EnsemblMetazoa:C49H3.5a.2
WormBase:C49H3.5a InParanoid:Q9GYQ9 OMA:NSMLDGR ArrayExpress:Q9GYQ9
Uniprot:Q9GYQ9
Length = 796
Score = 362 (132.5 bits), Expect = 3.3e-29, Sum P(4) = 3.3e-29
Identities = 78/211 (36%), Positives = 121/211 (57%)
Query: 4 ERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK 63
E+R K Q K K S+ R +L N RV+Q+NLVY++GL +AD ++L++ EYFG+YGK+ K
Sbjct: 80 EQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVADPEILKKNEYFGRYGKIQK 139
Query: 64 VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHA 123
+ S T + H S Y+TY R DDA+R IQ VH+ +LDGR ++A GTTKYC +
Sbjct: 140 IVTSATPSLPAPHLPP-SHTAYVTYKRVDDALRAIQGVHNSMLDGRLVKASLGTTKYCSS 198
Query: 124 WIRNMPCSVP--DCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSGNALP 181
++ + C P +C+YLH+ E SFTKD++ +++I S N+ P
Sbjct: 199 FLNSRKCFKPVGECMYLHENAEAEISFTKDDMHLGKHTEYEKRLI--------ESMNSRP 250
Query: 182 PPADEYINSNITSTAKPIAKNSSNIIENPNN 212
PP + S + P + + +E+ ++
Sbjct: 251 PPPQSTLASQLDKILAPTSNSPRRYLEDDSD 281
Score = 48 (22.0 bits), Expect = 3.9e-29, Sum P(3) = 3.9e-29
Identities = 26/136 (19%), Positives = 51/136 (37%)
Query: 603 ESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGL 662
+ NRQ D + + ++ Q + F FS+ ++ + + Q +
Sbjct: 579 DMNRQQDYMYSRLMSQQQQQSQQQRQFDSTPGFSHPFGSMQQQQQSSQQQQHQSQSSQSS 638
Query: 663 LKNKDIFT---DKHQNAFXXXXXXXXXNFLGSHSFISSSV--SKAPTSV--PPGFAVP-- 713
+D+F +HQ + G +S++ + + + P + PPG P
Sbjct: 639 SLLQDLFNRQQQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPPPGLGGPST 698
Query: 714 NRAPPPGFSP-HGTMQ 728
NR+ +P H T Q
Sbjct: 699 NRSSTTQQAPPHMTQQ 714
Score = 44 (20.5 bits), Expect = 3.3e-29, Sum P(4) = 3.3e-29
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 838 QPQPNNL-SSFTQSPAQQYRNAHMSTGH 864
Q P +L SS Q P QQ ++ H S H
Sbjct: 536 QQHPQHLQSSHQQHPLQQNQDQHHSFLH 563
Score = 44 (20.5 bits), Expect = 3.3e-29, Sum P(4) = 3.3e-29
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 687 NFLGSHSFISSSVS-KAPTSVPPGFAVPNRAPPPGFSP 723
+ G+H+ SS+ S + S PPG A N GF P
Sbjct: 453 SLFGTHT--SSTPSFRREASPPPGLARFNSDDDLGFDP 488
Score = 39 (18.8 bits), Expect = 3.3e-29, Sum P(4) = 3.3e-29
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 225 SLPTAASWVMRVSATLPTNKNLSG 248
S P+A S ++ S+ PT K SG
Sbjct: 425 SSPSAQSTIVEPSSLFPTFKMDSG 448
Score = 39 (18.8 bits), Expect = 5.5e-28, Sum P(4) = 5.5e-28
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 711 AVPNRAPPPGFS 722
AVP PPPGFS
Sbjct: 783 AVP---PPPGFS 791
Score = 38 (18.4 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 783 QTPSSQLNPFEHEARLQLLMQQSSSGYQNLRFQDYPMNR 821
Q Q + F H+ Q QQ R QDY +R
Sbjct: 552 QQNQDQHHSFLHQLHAQQQHQQQQFAADMNRQQDYMYSR 590
Score = 37 (18.1 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 617 FKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRHSADQHP 657
F ES S QE+ H S H+L ++ Q P
Sbjct: 489 FTESSKGLSALLQEEQEQIPPHNSASNHTLDVLKQLFGQLP 529
>CGD|CAL0000791 [details] [associations]
symbol:NOT4 species:5476 "Candida albicans" [GO:0009405
"pathogenesis" evidence=IMP] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0036178 "filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 CGD:CAL0000791 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0044011 EMBL:AACQ01000131 GO:GO:0000152
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_713212.1
ProteinModelPortal:Q59UI5 STRING:Q59UI5 GeneID:3645115
KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 342 (125.4 bits), Expect = 9.8e-28, Sum P(2) = 9.8e-28
Identities = 87/278 (31%), Positives = 140/278 (50%)
Query: 4 ERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGL--PINLAD-EDLLQRKEYFGQYGK 60
E++QK ++ K + HL +RV+Q+NLVY+ GL P N D +L+ +YFGQYGK
Sbjct: 70 EKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSVLRSDKYFGQYGK 129
Query: 61 VLKVSISR---TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT 117
+ K+ I + T H N VY+T++R++DA+RCI + + DGR LRA GT
Sbjct: 130 ISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSLCDGRVLRAAHGT 189
Query: 118 TKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSG 177
TKYC +++R PC P+C++LH+ G + DS+T+ ++ T+ ++ +G T H S
Sbjct: 190 TKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLS---TQQGIK--MGMTARSHTTS- 243
Query: 178 NALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVS 237
+ SN + + + + + + A +G SNS + + S
Sbjct: 244 --FGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSG-SNSPSVNNNIPLANS 300
Query: 238 ATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTI 275
A PT L VR Q K P+ T+ +T +
Sbjct: 301 AAFPT---LGEIVRDQKQQQKKETKPRSKTTKSNNTLV 335
Score = 41 (19.5 bits), Expect = 9.8e-28, Sum P(2) = 9.8e-28
Identities = 18/81 (22%), Positives = 29/81 (35%)
Query: 592 TSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRH 651
T A+L + N + L Q + +Q+ + H L NI
Sbjct: 445 TPALQVAQLQQNKNDEQQKQAQQQLLLLQLQHQQQLQQQQQQRQLQQQQNQPHQL-NILK 503
Query: 652 SADQ----HPAPNGLLKNKDI 668
++D+ P P GL KD+
Sbjct: 504 TSDRVNTSTPPPPGLFAGKDV 524
>UNIPROTKB|Q59UI5 [details] [associations]
symbol:NOT4 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Mot2p" species:237561 "Candida albicans SC5314"
[GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044011 "single-species
biofilm formation on inanimate substrate" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0000791 GO:GO:0071216 GO:GO:0036244 GO:GO:0036180
GO:GO:0036178 GO:GO:0009405 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0044011
EMBL:AACQ01000131 GO:GO:0000152 GO:GO:0030015 eggNOG:COG5175
RefSeq:XP_713212.1 ProteinModelPortal:Q59UI5 STRING:Q59UI5
GeneID:3645115 KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 342 (125.4 bits), Expect = 9.8e-28, Sum P(2) = 9.8e-28
Identities = 87/278 (31%), Positives = 140/278 (50%)
Query: 4 ERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGL--PINLAD-EDLLQRKEYFGQYGK 60
E++QK ++ K + HL +RV+Q+NLVY+ GL P N D +L+ +YFGQYGK
Sbjct: 70 EKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSVLRSDKYFGQYGK 129
Query: 61 VLKVSISR---TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT 117
+ K+ I + T H N VY+T++R++DA+RCI + + DGR LRA GT
Sbjct: 130 ISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSLCDGRVLRAAHGT 189
Query: 118 TKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSG 177
TKYC +++R PC P+C++LH+ G + DS+T+ ++ T+ ++ +G T H S
Sbjct: 190 TKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLS---TQQGIK--MGMTARSHTTS- 243
Query: 178 NALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVS 237
+ SN + + + + + + A +G SNS + + S
Sbjct: 244 --FGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSG-SNSPSVNNNIPLANS 300
Query: 238 ATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTI 275
A PT L VR Q K P+ T+ +T +
Sbjct: 301 AAFPT---LGEIVRDQKQQQKKETKPRSKTTKSNNTLV 335
Score = 41 (19.5 bits), Expect = 9.8e-28, Sum P(2) = 9.8e-28
Identities = 18/81 (22%), Positives = 29/81 (35%)
Query: 592 TSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNHASDVEHSLSNIRH 651
T A+L + N + L Q + +Q+ + H L NI
Sbjct: 445 TPALQVAQLQQNKNDEQQKQAQQQLLLLQLQHQQQLQQQQQQRQLQQQQNQPHQL-NILK 503
Query: 652 SADQ----HPAPNGLLKNKDI 668
++D+ P P GL KD+
Sbjct: 504 TSDRVNTSTPPPPGLFAGKDV 524
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 129 (50.5 bits), Expect = 0.00041, P = 0.00041
Identities = 113/602 (18%), Positives = 234/602 (38%)
Query: 119 KYCHAWIRNMPCSVPDCLYLHDF-GSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSG 177
KY +W+ SV + DF Q+DS + ++ + +T G T++ +
Sbjct: 6 KYKVSWV--FVLSVAGSSLIRDFLFGQDDSLSIEKRTNEYTTPEY----GGTSHCNGGDK 59
Query: 178 NALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVS 237
N P D K++ + P S + + S+++ +++S V+ S
Sbjct: 60 NCYPQCFDHRGQPKKDKCC--FDKHNKVLYPYPCTSSSSS--SSSSSTVSSSSSEVISSS 115
Query: 238 ATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDP 297
+ ++ ++ S+ +S+ + +E++S++ + + ++SKV +
Sbjct: 116 SEEASSSEITSSSEISSSSEVSSSSEVLSSSEIISSSSEVVS-------SSSKVSSSSEA 168
Query: 298 LELGKEYIDALS---STNEEATLDSIPATATSNQYITCRPTSKSSEKDIAXXXXXXXXXX 354
E I + S S++ + T S +++S + S SSE +
Sbjct: 169 TSSSSEIISSSSEVVSSSSQVTSSSEVVSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEV 228
Query: 355 XXXXXXXXXXVEDESSHIVMDFQGLCCGLSSIGLESQFEKDRSLPVVPNSS-ISKHVSVN 413
SS IV + S + + S E S VV +SS +S V+
Sbjct: 229 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEVS 287
Query: 414 LPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDF--DDLQFKGLEDMHHLPPI-SSTP 470
E S S Q ++ + S + + ++ + SS+
Sbjct: 288 SSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVVSSSS 347
Query: 471 HLPHN--LNQSSYLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSRSENLISNGFITN--E 526
+ + ++ SS +S + V++ S + S V EV+ S SE S+ +++ E
Sbjct: 348 EVSSSSEVSSSSEVS-SSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 406
Query: 527 ASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADA 586
SS + ++ + SS SEV S + +++ S V S E S S+++S ++
Sbjct: 407 VSSSSEVSSSSEVSSS-SEVSSSSEVSSSSQVISS--SEVVSSSSEVSSSSEVVSSSSEV 463
Query: 587 WEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNH---ASDVE 643
S +S S + + S++ S ++ S E S + E S+ +S E
Sbjct: 464 ---SSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 520
Query: 644 HSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAP 703
S S+ S+ + + + ++ + +I + + + + + S S + SS S+
Sbjct: 521 VSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVS 580
Query: 704 TS 705
+S
Sbjct: 581 SS 582
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 129 (50.5 bits), Expect = 0.00041, P = 0.00041
Identities = 113/602 (18%), Positives = 234/602 (38%)
Query: 119 KYCHAWIRNMPCSVPDCLYLHDF-GSQEDSFTKDEIVSAFTRSRVQQIIGATNNMHRRSG 177
KY +W+ SV + DF Q+DS + ++ + +T G T++ +
Sbjct: 6 KYKVSWV--FVLSVAGSSLIRDFLFGQDDSLSIEKRTNEYTTPEY----GGTSHCNGGDK 59
Query: 178 NALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIVAGKSNSLPTAASWVMRVS 237
N P D K++ + P S + + S+++ +++S V+ S
Sbjct: 60 NCYPQCFDHRGQPKKDKCC--FDKHNKVLYPYPCTSSSSS--SSSSSTVSSSSSEVISSS 115
Query: 238 ATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVVSTTISIQTVQPMEAVATSKVHHKLDP 297
+ ++ ++ S+ +S+ + +E++S++ + + ++SKV +
Sbjct: 116 SEEASSSEITSSSEISSSSEVSSSSEVLSSSEIISSSSEVVS-------SSSKVSSSSEA 168
Query: 298 LELGKEYIDALS---STNEEATLDSIPATATSNQYITCRPTSKSSEKDIAXXXXXXXXXX 354
E I + S S++ + T S +++S + S SSE +
Sbjct: 169 TSSSSEIISSSSEVVSSSSQVTSSSEVVSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEV 228
Query: 355 XXXXXXXXXXVEDESSHIVMDFQGLCCGLSSIGLESQFEKDRSLPVVPNSS-ISKHVSVN 413
SS IV + S + + S E S VV +SS +S V+
Sbjct: 229 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEVS 287
Query: 414 LPGSHGPQEEKSGQFTECKSFQASMAAPTMEDSPDF--DDLQFKGLEDMHHLPPI-SSTP 470
E S S Q ++ + S + + ++ + SS+
Sbjct: 288 SSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVVSSSS 347
Query: 471 HLPHN--LNQSSYLSWQAGDVSNQSNLDGHSGNVPLEHKEVLPSRSENLISNGFITN--E 526
+ + ++ SS +S + V++ S + S V EV+ S SE S+ +++ E
Sbjct: 348 EVSSSSEVSSSSEVS-SSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 406
Query: 527 ASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADA 586
SS + ++ + SS SEV S + +++ S V S E S S+++S ++
Sbjct: 407 VSSSSEVSSSSEVSSS-SEVSSSSEVSSSSQVISS--SEVVSSSSEVSSSSEVVSSSSEV 463
Query: 587 WEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSRFSFARQEEFSNH---ASDVE 643
S +S S + + S++ S ++ S E S + E S+ +S E
Sbjct: 464 ---SSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSE 520
Query: 644 HSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFXXXXXXXXXNFLGSHSFISSSVSKAP 703
S S+ S+ + + + ++ + +I + + + + + S S + SS S+
Sbjct: 521 VSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVS 580
Query: 704 TS 705
+S
Sbjct: 581 SS 582
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.128 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 917 888 0.00086 122 3 11 23 0.45 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 623 (66 KB)
Total size of DFA: 430 KB (2205 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 93.36u 0.12s 93.48t Elapsed: 00:00:04
Total cpu time: 93.36u 0.12s 93.48t Elapsed: 00:00:04
Start: Tue May 21 05:09:41 2013 End: Tue May 21 05:09:45 2013