BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002482
(917 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4
PE=1 SV=3
Length = 575
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK
Sbjct: 78 IKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGK 137
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKY
Sbjct: 138 IHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 195
Query: 121 CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
C +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 196 CSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
>sp|Q8BT14|CNOT4_MOUSE CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4
PE=1 SV=2
Length = 575
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
+ +E++QK + K K SE R HL +VRV+Q+NLV+++GL LAD ++L+R EYFG++GK
Sbjct: 78 IKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGK 137
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ KV I+ + + S S Y+TY R +DA+R IQ V++ ++DGR L+A GTTKY
Sbjct: 138 IHKVVINNSTS--YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 195
Query: 121 CHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQQII 166
C +++NM C PDC+YLH+ G + SFTK+E+ + + Q+++
Sbjct: 196 CSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
>sp|P34909|NOT4_YEAST General negative regulator of transcription subunit 4
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MOT2 PE=1 SV=1
Length = 587
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 25/206 (12%)
Query: 4 ERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDL---LQRKEYFGQYGK 60
ER+ + ++ K R HL+ RVIQ+NLVY++G+ + E++ L+ ++YFGQYGK
Sbjct: 109 ERKHREKERKENEYTNRKHLSGTRVIQKNLVYVVGINPPVPYEEVAPTLKSEKYFGQYGK 168
Query: 61 VLKVSISR------TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 114
+ K+ ++R T + H + VYIT+ +DDA RCI V +DGR ++A
Sbjct: 169 INKIVVNRKTPHSNNTTSEHYHHHSPGYGVYITFGSKDDAARCIAQVDGTYMDGRLIKAA 228
Query: 115 FGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEI-----------VSAFTRSRVQ 163
+GTTKYC +++R +PC P+C++LH+ G + DSF K E+ +AFTRS +
Sbjct: 229 YGTTKYCSSYLRGLPCPNPNCMFLHEPGEEADSFNKRELHNKQQAQQQSGGTAFTRSGIH 288
Query: 164 QII-----GATNNMHRRSGNALPPPA 184
I G+ N+ + P PA
Sbjct: 289 NNISTSTAGSNTNLLSENFTGTPSPA 314
>sp|Q09818|YAC4_SCHPO Putative general negative regulator of transcription C16C9.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC16C9.04c PE=3 SV=1
Length = 489
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 97/139 (69%), Gaps = 6/139 (4%)
Query: 20 RMHLTNVRVIQRNLVYIIGLPINLADED---LLQRKEYFGQYGKVLKVSISRTATGDIQH 76
R HL N+RV+Q+NL Y+ GL +A+E+ +L+ EYFGQYGK++K++I++ A +
Sbjct: 104 RKHLANIRVVQKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAAN--- 160
Query: 77 SANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCL 136
SAN VYITY R++DA R I ++ + DGR LRA +GTTKYC +++RN C P C+
Sbjct: 161 SANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCM 220
Query: 137 YLHDFGSQEDSFTKDEIVS 155
YLH+ G + DS+TK+++ S
Sbjct: 221 YLHEPGDEVDSYTKEDLAS 239
>sp|Q66JB7|RFOX2_XENTR RNA binding protein fox-1 homolog 2 OS=Xenopus tropicalis GN=rbfox2
PE=2 SV=1
Length = 380
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 23/105 (21%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ ++ KP+ R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 98 QNSENSESKPTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 141
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111
I + + ++T+ DA R + +HS +++GR +
Sbjct: 142 -------IFNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKI 179
>sp|A4F5G6|RFOX2_XENLA RNA binding protein fox-1 homolog 2 OS=Xenopus laevis GN=rbfox2
PE=1 SV=1
Length = 411
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 23/105 (21%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q ++ ++ K S R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 161 QNNENSETKASPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 204
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111
I + + ++T+ DA R + +HS +++GR +
Sbjct: 205 -------IFNERGSKGFGFVTFETSADADRAREKLHSTVVEGRKI 242
>sp|A1A5R1|RFOX2_RAT RNA binding protein fox-1 homolog 2 OS=Rattus norvegicus GN=Rbfox2
PE=2 SV=1
Length = 432
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 151 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 194
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 117
I + + ++T+ DA R + +H +++GR + T
Sbjct: 195 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 247
Query: 118 -TKYCHAW 124
T Y + W
Sbjct: 248 VTPYANGW 255
>sp|Q8BP71|RFOX2_MOUSE RNA binding protein fox-1 homolog 2 OS=Mus musculus GN=Rbfox2 PE=1
SV=2
Length = 449
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 168 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 211
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 117
I + + ++T+ DA R + +H +++GR + T
Sbjct: 212 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 264
Query: 118 -TKYCHAW 124
T Y + W
Sbjct: 265 VTPYANGW 272
>sp|O43251|RFOX2_HUMAN RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1
SV=3
Length = 390
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 109 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 152
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 117
I + + ++T+ DA R + +H +++GR + T
Sbjct: 153 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 205
Query: 118 -TKYCHAW 124
T Y + W
Sbjct: 206 VTPYANGW 213
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
++ VY+ LP +L + DL + F +YGKV+KV+I + + + + +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKD-----KDTRKSKGVAFILFLD 60
Query: 91 EDDAIRCIQSVHSYILDGRPLRA 113
+D A+ C +++++ L GR ++A
Sbjct: 61 KDSALNCTRAINNKQLFGRVIKA 83
>sp|A6QPR6|RFOX2_BOVIN RNA binding protein fox-1 homolog 2 OS=Bos taurus GN=RBFOX2 PE=2
SV=2
Length = 394
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ ++ K + R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 117 QSSENSESKSTPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 160
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT--------- 117
I + + ++T+ DA R + +H +++GR + T
Sbjct: 161 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 213
Query: 118 -TKYCHAW 124
T Y + W
Sbjct: 214 VTPYANGW 221
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
++ VY+ LP +L + DL + F +YGKV+KV+I + + + + +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKD-----KDTRKSKGVAFILFLD 60
Query: 91 EDDAIRCIQSVHSYILDGRPLRA 113
+D A+ C +++++ L GR ++A
Sbjct: 61 KDSALNCTRAINNKQLFGRVIKA 83
>sp|Q9JJ43|RFOX1_MOUSE RNA binding protein fox-1 homolog 1 OS=Mus musculus GN=Rbfox1 PE=1
SV=3
Length = 396
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 36/145 (24%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ + K R+H++N+ P D DL Q FGQ+GK+L V I
Sbjct: 104 QPSENTESKSQPKRLHVSNI-------------PFRFRDPDLRQM---FGQFGKILDVEI 147
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK------- 119
I + + ++T+ DA R + +H +++GR + T +
Sbjct: 148 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKT 200
Query: 120 ---YCHAWIRNMPCSVPDCLYLHDF 141
Y + W N V +Y DF
Sbjct: 201 VNPYTNGWKLN---PVVGAVYSPDF 222
>sp|Q95KI0|RFOX1_MACFA RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis
GN=RBFOX1 PE=2 SV=1
Length = 376
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 33/131 (25%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ + K R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 107 QPSENTENKSQPKRLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI 150
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK------- 119
I + + ++T+ DA R + +H +++GR + T +
Sbjct: 151 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKT 203
Query: 120 ---YCHAWIRN 127
Y + W N
Sbjct: 204 VNPYTNGWKLN 214
>sp|B3QIT8|GLMU_RHOPT Bifunctional protein GlmU OS=Rhodopseudomonas palustris (strain
TIE-1) GN=glmU PE=3 SV=1
Length = 452
Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 544 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL-TSPYSFAKLLR 602
+E+G G+++G + S+VAP+ + VG S+I+K + DA A E ++ T+ +AK R
Sbjct: 381 TEIGAGAFIGSNSSLVAPVKIGTGAYVGSGSVITKDVPDDALAVERNVQTAKDGWAKRFR 440
Query: 603 ESNRQH 608
++ +H
Sbjct: 441 DAKSRH 446
>sp|Q5NVN8|RFOX1_PONAB RNA binding protein fox-1 homolog 1 OS=Pongo abelii GN=RBFOX1 PE=2
SV=1
Length = 382
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 37/127 (29%)
Query: 11 KAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTA 70
K++PK R+H++N+ P D DL ++ FGQ+GK+L V I
Sbjct: 113 KSQPK----RLHVSNI-------------PFRFRDPDL---RQMFGQFGKILDVEI---- 148
Query: 71 TGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK----------Y 120
I + + ++T+ DA R + +H +++GR + T + Y
Sbjct: 149 ---IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
Query: 121 CHAWIRN 127
+ W N
Sbjct: 206 TNGWKLN 212
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
++ VY+ LP +L + DL + F +YGKV+KV+I + D + S +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKDK--DTRRSKG---VAFILFLD 60
Query: 91 EDDAIRCIQSVHSYILDGRPLRA 113
+D A C +++++ L GR ++A
Sbjct: 61 KDSAQNCTRAINNKQLFGRVIKA 83
>sp|Q642J5|RFOX1_DANRE RNA binding protein fox-1 homolog 1 OS=Danio rerio GN=rbfox1 PE=2
SV=1
Length = 373
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 37/127 (29%)
Query: 11 KAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTA 70
K +PK R+H++N+ P D DL Q FGQ+GK+L V I
Sbjct: 115 KTQPK----RLHVSNI-------------PFRFRDPDLRQM---FGQFGKILDVEI---- 150
Query: 71 TGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK----------Y 120
I + + ++T+ DA R + +H +++GR + T + Y
Sbjct: 151 ---IFNERGSKGFGFVTFESSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 207
Query: 121 CHAWIRN 127
+ W N
Sbjct: 208 ANGWKLN 214
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
++ VY+ LP +L + DL + F +YGKV+KV+I + + + + +I +
Sbjct: 9 KSTVYVSNLPFSLTNNDLYR---IFSKYGKVVKVTIMKD-----KDTRKSKGVAFILFLD 60
Query: 91 EDDAIRCIQSVHSYILDGRPLRA 113
+D A C +++++ L GR ++A
Sbjct: 61 KDSAQNCTRAINNKQLFGRVIKA 83
>sp|Q9NWB1|RFOX1_HUMAN RNA binding protein fox-1 homolog 1 OS=Homo sapiens GN=RBFOX1 PE=1
SV=2
Length = 397
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 33/131 (25%)
Query: 7 QKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSI 66
Q S+ + K R+H++N+ P D DL Q FGQ+GK+L V I
Sbjct: 105 QPSENTENKSQPKRLHVSNI-------------PFRFRDPDLRQM---FGQFGKILDVEI 148
Query: 67 SRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK------- 119
I + + ++T+ DA R + +H +++GR + T +
Sbjct: 149 -------IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKT 201
Query: 120 ---YCHAWIRN 127
Y + W N
Sbjct: 202 VNPYTNGWKLN 212
>sp|Q498L2|SLTM_XENLA SAFB-like transcription modulator OS=Xenopus laevis GN=sltm PE=2
SV=1
Length = 998
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
RNL ++ GL N DL K FG+YGKVL + A S C +T S
Sbjct: 345 RNL-WVSGLSSNTKAADL---KNLFGKYGKVLSAKVVTNA-----RSPGAKCYGIVTMSS 395
Query: 91 EDDAIRCIQSVHSYILDGRPL 111
D RCI +H L G+ +
Sbjct: 396 SADVARCISHLHRTELHGQQI 416
>sp|A6NFN3|RFOX3_HUMAN RNA binding protein fox-1 homolog 3 OS=Homo sapiens GN=RBFOX3 PE=2
SV=4
Length = 312
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 37/129 (28%)
Query: 9 SQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISR 68
++K +PK R+H++N+ P D DL Q FGQ+GK+L V I
Sbjct: 93 TEKQQPK----RLHVSNI-------------PFRFRDPDLRQM---FGQFGKILDVEI-- 130
Query: 69 TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK--------- 119
I + + ++T+ DA R + ++ I++GR + T +
Sbjct: 131 -----IFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGN 185
Query: 120 -YCHAWIRN 127
Y + W N
Sbjct: 186 PYTNGWKLN 194
>sp|P49960|PRP24_YEAST U4/U6 snRNA-associated-splicing factor PRP24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP24 PE=1
SV=1
Length = 444
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDD 93
+ I L L DE+LL +E F +G + K++I G +HS NN CC ++ + +D
Sbjct: 212 IMIRNLSTELLDENLL--RESFEGFGSIEKINI---PAGQKEHSFNN-CCAFMVFENKDS 265
Query: 94 AIRCIQSVHSYI 105
A R +Q S +
Sbjct: 266 AERALQMNRSLL 277
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
RNL ++ GL DL K F +YGKV+ + A S C ++T S
Sbjct: 407 RNL-WVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNA-----RSPGARCYGFVTMST 457
Query: 91 EDDAIRCIQSVHSYILDGR 109
D+A +CI +H L GR
Sbjct: 458 SDEATKCISHLHRTELHGR 476
>sp|Q8BIF2|RFOX3_MOUSE RNA binding protein fox-1 homolog 3 OS=Mus musculus GN=Rbfox3 PE=1
SV=2
Length = 374
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 27/101 (26%)
Query: 9 SQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISR 68
++K +PK R+H++N+ P D DL Q FGQ+GK+L V I
Sbjct: 93 TEKQQPK----RLHVSNI-------------PFRFRDPDLRQM---FGQFGKILDVEI-- 130
Query: 69 TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109
I + + ++T+ DA R + ++ I++GR
Sbjct: 131 -----IFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGR 166
>sp|Q136Z3|GLMU_RHOPS Bifunctional protein GlmU OS=Rhodopseudomonas palustris (strain
BisB5) GN=glmU PE=3 SV=1
Length = 452
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 544 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWE-DSLTSPYSFAKLLR 602
+E+G G+++G + S+VAP+ V + VG S+++K + D+ A E + T +AK R
Sbjct: 381 TEIGAGAFIGSNSSLVAPVKIGVGAYVGSGSVVTKNVPDDSLAVERNDQTVRVGWAKRFR 440
Query: 603 ESN 605
E++
Sbjct: 441 ETS 443
>sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1827.05c PE=4 SV=1
Length = 276
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRT-ATGDIQHSANNSCCVYITY 88
++ ++Y+ LP ++ Q + YF Q+G VL++ +SR TG +H A +I +
Sbjct: 103 KKGVLYVGRLPHGFYEK---QMRMYFSQFGPVLRLRMSRNRKTGSSKHYA------FIEF 153
Query: 89 SREDDAIRCIQSVHSYILDGRPLR 112
D A +++H+Y+L G+ L+
Sbjct: 154 ESLDVANVVAETMHNYLLYGKLLQ 177
>sp|Q6N6F8|GLMU_RHOPA Bifunctional protein GlmU OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=glmU PE=3 SV=1
Length = 452
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 544 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWEDSL-TSPYSFAKLLR 602
+E+G G+++G + S+VAP+ + VG S+I+K + A A E ++ T+ +AK R
Sbjct: 381 TEIGAGAFIGSNSSLVAPVKIGTGAYVGSGSVITKDVPDGALAVERNVQTAKDGWAKRFR 440
Query: 603 ESNRQH 608
++ +H
Sbjct: 441 DAKSRH 446
>sp|Q9URY5|FHP_SCHPO Flavohemoprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC869.02c PE=3 SV=1
Length = 427
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 97 CIQSVHSYILDGRPLRACFGTTKYC----HAWIRNMPCSVPDCLYLHDFGSQEDSFTKDE 152
I + + +LDGR + C+ + Y W+ + + L L +F S+E S TK++
Sbjct: 307 LIPIIETALLDGRKVNFCYSSRNYVSRPFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQ 366
Query: 153 IV 154
IV
Sbjct: 367 IV 368
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 121 CH 122
H
Sbjct: 199 PH 200
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 121 CH 122
H
Sbjct: 199 PH 200
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 121 CH 122
H
Sbjct: 199 PH 200
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 38.1 bits (87), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 101 MSTRRRHVGNRANPDPN--------------CCLGVFGLSLYTTERDL---REVFSKYGP 143
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ VSI Q S + ++ + DDA + + LDGR +R F TK
Sbjct: 144 IADVSIVYD-----QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 198
Query: 121 CH 122
H
Sbjct: 199 PH 200
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 38.1 bits (87), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 27 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYI 86
R ++ +Y+ LP+++ DE LQ + F Q+GK+L V + R +G ++ C ++
Sbjct: 186 RALEFTNIYVKNLPVDV-DEQGLQ--DLFSQFGKMLSVKVMRDNSG------HSRCFGFV 236
Query: 87 TYSREDDAIRCIQSVHSYILDGRPLRA 113
+ + ++A + + ++ + GR L A
Sbjct: 237 NFEKHEEAQKAVVHMNGKEVSGRLLYA 263
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
++ VY+ LP +L + DL + F +YGKV+KV+I + + S + ++ +
Sbjct: 9 KSTVYVSNLPFSLTNNDLHR---IFSKYGKVVKVTILKD-----KDSRKSKGVSFVLFLD 60
Query: 91 EDDAIRCIQSVHSYILDGRPLRA 113
++ A C++ +++ L GR ++A
Sbjct: 61 KESAQNCVRGLNNKQLFGRAIKA 83
>sp|Q8CH25|SLTM_MOUSE SAFB-like transcription modulator OS=Mus musculus GN=Sltm PE=1 SV=1
Length = 1031
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDD 93
+++ GL N DL K FG+YGKVL + A S C +T S +
Sbjct: 386 IWVSGLSSNTKAADL---KNLFGKYGKVLSAKVVTNA-----RSPGAKCYGIVTMSSSTE 437
Query: 94 AIRCIQSVHSYILDG 108
RC+ +H L G
Sbjct: 438 VSRCVAHLHRTELHG 452
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90
RNL ++ GL + DL K F ++GKV+ + A S C ++T S
Sbjct: 451 RNL-WVSGLSSSTRAADL---KSLFSKHGKVIGAKVVTNA-----RSPGARCYGFVTMST 501
Query: 91 EDDAIRCIQSVHSYILDGR 109
D+A +CI +H L GR
Sbjct: 502 SDEATKCISHLHRTELHGR 520
>sp|Q9NWH9|SLTM_HUMAN SAFB-like transcription modulator OS=Homo sapiens GN=SLTM PE=1 SV=2
Length = 1034
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDD 93
+++ GL N DL K FG+YGKVL + A S C +T S +
Sbjct: 386 IWVSGLSSNTKAADL---KNLFGKYGKVLSAKVVTNA-----RSPGAKCYGIVTMSSSTE 437
Query: 94 AIRCIQSVHSYILDG 108
RCI +H L G
Sbjct: 438 VSRCIAHLHRTELHG 452
>sp|B6JFB2|GLMU_OLICO Bifunctional protein GlmU OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=glmU PE=3 SV=1
Length = 451
Score = 37.0 bits (84), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 544 SEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDADAWE--DSLTSPYSFAKLL 601
+EVG G+++G + S+VAP+ S +G S+I++ + DA E + +T P +AK
Sbjct: 381 TEVGAGAFVGSNSSLVAPVKIGAGSYIGSGSVITREVPEDALVVERNEQVTRP-GWAKRY 439
Query: 602 RE 603
RE
Sbjct: 440 RE 441
>sp|Q9Y4I5|MTL5_HUMAN Tesmin OS=Homo sapiens GN=MTL5 PE=1 SV=2
Length = 508
Score = 37.0 bits (84), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 431 CKSFQASMAAPTMEDSPDFDDLQFKGLEDMHHLPP--ISSTPHLPHNLNQSSYLSWQAGD 488
CK+++ S T+ P++ +Q GLE H+LPP S P H+ SS +SW+ +
Sbjct: 400 CKNYEESPERKTLMSMPNY--MQTGGLEGSHYLPPTKFSGLPRFSHDRRPSSCISWEVVE 457
Query: 489 VS 490
+
Sbjct: 458 AT 459
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 35.4 bits (80), Expect = 2.0, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 100 MSNRRRHTGSRANPDPN--------------TCLGVFGLSLYTTERDL---REVFSRYGP 142
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ V++ Q + + ++ + R DD+ ++ + LDGR +R + TK
Sbjct: 143 LSGVNVVYD-----QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKR 197
Query: 121 CH 122
H
Sbjct: 198 AH 199
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 35.4 bits (80), Expect = 2.0, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 1 MTSERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGK 60
M++ RR +A P P+ + + GL + + DL +E F +YG
Sbjct: 102 MSNRRRHTGSRANPDPN--------------TCLGVFGLSLYTTERDL---REVFSRYGP 144
Query: 61 VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 120
+ V++ Q + + ++ + R DD+ ++ + LDGR +R + TK
Sbjct: 145 LSGVNVVYD-----QRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKR 199
Query: 121 CH 122
H
Sbjct: 200 AH 201
>sp|A7HXP0|GLMU_PARL1 Bifunctional protein GlmU OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=glmU PE=3 SV=1
Length = 452
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 539 HSSLFSEVGFGSYLGKHDSMVAPLHSNVASDVGESSIISKILSLDA 584
++ F+++G G+++G + S+VAP+ + +G S+++K ++ DA
Sbjct: 376 YNKFFTDIGAGAFIGSNSSLVAPVSIGDGAYLGSGSVVTKDVAADA 421
>sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus laevis GN=mki67ipl PE=2 SV=2
Length = 278
Score = 34.7 bits (78), Expect = 3.2, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSRED 92
++YI +P +L + L +EYF Q+G V ++ +SR+ + + N+ Y+ Y ++
Sbjct: 42 VIYIGHIPKSLIEPQL---QEYFNQFGTVTRLRLSRS-----KKTGNSKGYAYVEYECDE 93
Query: 93 DAIRCIQSVHSYILDGRPLRACFGTTKYCH 122
A ++++Y+ R L+ F T + H
Sbjct: 94 VAKIVADTMNNYLFCERLLKCEFVTPEKVH 123
>sp|P34217|PIN4_YEAST RNA-binding protein PIN4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PIN4 PE=1 SV=1
Length = 668
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 821 RFSPPSDTYGISSKVLNQPQPNNLSSFTQSPAQQYRNAHMSTGHLGSLKGVKSINDLGVS 880
+ SPP+ I+S+ L+Q QP S Q Y+NA +S+ L +L G S N S
Sbjct: 539 QISPPNSQIPINSQTLSQAQPPAQSQTQQRVPVAYQNASLSSQQLYNLNGPSSAN--SQS 596
Query: 881 DLM---TNGGIGFNKFIPSYED 899
L+ TNG + N SY D
Sbjct: 597 QLLPQHTNGSVHSNFSYQSYHD 618
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,018,430
Number of Sequences: 539616
Number of extensions: 14828364
Number of successful extensions: 36643
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 35220
Number of HSP's gapped (non-prelim): 1121
length of query: 917
length of database: 191,569,459
effective HSP length: 127
effective length of query: 790
effective length of database: 123,038,227
effective search space: 97200199330
effective search space used: 97200199330
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)