Query 002482
Match_columns 917
No_of_seqs 229 out of 833
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 00:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5175 MOT2 Transcriptional r 100.0 1.1E-46 2.4E-51 399.0 13.5 155 3-159 86-243 (480)
2 KOG2068 MOT2 transcription fac 100.0 6.7E-43 1.4E-47 370.8 10.2 257 4-271 50-309 (327)
3 PLN03134 glycine-rich RNA-bind 99.5 5.8E-14 1.2E-18 135.4 11.1 89 22-119 26-114 (144)
4 PF00076 RRM_1: RNA recognitio 99.5 4.9E-14 1.1E-18 114.1 8.3 70 34-112 1-70 (70)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 6.1E-14 1.3E-18 147.0 10.8 80 33-120 271-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.5E-13 3.3E-18 144.0 10.7 81 31-119 3-83 (352)
7 TIGR01659 sex-lethal sex-letha 99.4 2E-12 4.3E-17 140.5 12.2 82 29-118 105-186 (346)
8 PF14259 RRM_6: RNA recognitio 99.3 4.2E-12 9.1E-17 105.0 8.8 70 34-112 1-70 (70)
9 KOG0148 Apoptosis-promoting RN 99.3 3.8E-12 8.3E-17 134.5 8.6 90 16-119 144-238 (321)
10 smart00362 RRM_2 RNA recogniti 99.3 1.4E-11 3.1E-16 97.0 8.8 72 33-114 1-72 (72)
11 KOG0114 Predicted RNA-binding 99.3 1.2E-11 2.6E-16 116.4 9.5 76 31-117 18-93 (124)
12 PLN03120 nucleic acid binding 99.3 1.3E-11 2.8E-16 130.4 10.1 76 30-117 3-78 (260)
13 KOG0125 Ataxin 2-binding prote 99.3 6E-12 1.3E-16 135.6 7.7 78 32-119 97-174 (376)
14 KOG0107 Alternative splicing f 99.3 8.6E-12 1.9E-16 125.5 7.8 78 31-121 10-87 (195)
15 TIGR01645 half-pint poly-U bin 99.3 7.7E-12 1.7E-16 144.5 8.2 77 32-116 108-184 (612)
16 TIGR01628 PABP-1234 polyadenyl 99.3 1.1E-11 2.4E-16 139.5 9.0 82 29-119 283-364 (562)
17 TIGR01659 sex-lethal sex-letha 99.3 2.2E-11 4.7E-16 132.5 10.8 83 29-119 191-275 (346)
18 COG0724 RNA-binding proteins ( 99.2 4.4E-11 9.6E-16 113.3 10.5 80 31-118 115-194 (306)
19 cd00590 RRM RRM (RNA recogniti 99.2 6.1E-11 1.3E-15 93.9 9.4 74 33-115 1-74 (74)
20 KOG0111 Cyclophilin-type pepti 99.2 5.6E-12 1.2E-16 130.5 4.3 85 26-118 5-89 (298)
21 KOG0149 Predicted RNA-binding 99.2 1.3E-11 2.8E-16 128.4 6.5 76 32-116 13-88 (247)
22 TIGR01645 half-pint poly-U bin 99.2 3.6E-11 7.7E-16 139.1 10.5 81 32-120 205-285 (612)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.2 8E-11 1.7E-15 129.9 12.4 81 30-118 294-374 (509)
24 TIGR01628 PABP-1234 polyadenyl 99.2 5.5E-11 1.2E-15 134.0 10.7 110 33-159 2-111 (562)
25 smart00360 RRM RNA recognition 99.2 7E-11 1.5E-15 92.5 8.0 71 36-114 1-71 (71)
26 KOG4206 Spliceosomal protein s 99.2 4.1E-11 8.9E-16 123.8 8.0 83 33-123 11-94 (221)
27 TIGR01622 SF-CC1 splicing fact 99.2 7.5E-11 1.6E-15 128.7 10.3 79 31-117 186-264 (457)
28 KOG0121 Nuclear cap-binding pr 99.2 3.9E-11 8.4E-16 116.3 6.8 79 29-115 34-112 (153)
29 PF13893 RRM_5: RNA recognitio 99.2 1.2E-10 2.7E-15 94.0 7.9 55 52-116 2-56 (56)
30 TIGR01622 SF-CC1 splicing fact 99.1 3.6E-10 7.8E-15 123.5 12.7 116 31-158 89-208 (457)
31 PLN03213 repressor of silencin 99.1 1E-10 2.3E-15 130.9 8.3 79 32-122 11-91 (759)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.8E-10 4E-15 128.9 10.3 77 30-119 274-351 (481)
33 KOG0122 Translation initiation 99.1 1.8E-10 3.8E-15 120.7 9.3 82 30-119 188-269 (270)
34 KOG4207 Predicted splicing fac 99.1 6E-11 1.3E-15 122.1 5.4 80 30-117 12-91 (256)
35 TIGR01648 hnRNP-R-Q heterogene 99.1 2.1E-10 4.5E-15 132.3 9.3 89 31-129 58-147 (578)
36 KOG0148 Apoptosis-promoting RN 99.1 1.9E-10 4.2E-15 121.9 7.1 81 32-120 63-143 (321)
37 KOG0145 RNA-binding protein EL 99.0 6.2E-10 1.3E-14 117.7 9.9 80 32-119 279-358 (360)
38 KOG0126 Predicted RNA-binding 99.0 5.5E-11 1.2E-15 120.6 1.5 76 32-115 36-111 (219)
39 smart00361 RRM_1 RNA recogniti 99.0 8.3E-10 1.8E-14 93.7 7.6 60 52-114 6-70 (70)
40 PLN03121 nucleic acid binding 99.0 9.3E-10 2E-14 115.4 9.3 75 31-117 5-79 (243)
41 TIGR01648 hnRNP-R-Q heterogene 99.0 9.8E-10 2.1E-14 126.8 10.0 78 32-125 234-313 (578)
42 KOG0105 Alternative splicing f 98.9 1.3E-09 2.9E-14 111.0 7.0 84 32-126 7-90 (241)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 2.5E-09 5.4E-14 119.9 9.8 80 30-119 393-480 (481)
44 KOG0117 Heterogeneous nuclear 98.9 2.7E-09 5.9E-14 118.8 9.2 105 29-158 81-186 (506)
45 KOG0108 mRNA cleavage and poly 98.9 3.8E-09 8.3E-14 118.6 8.1 80 32-119 19-98 (435)
46 KOG0131 Splicing factor 3b, su 98.8 3E-09 6.4E-14 108.1 5.6 81 29-117 7-87 (203)
47 KOG0113 U1 small nuclear ribon 98.8 1.1E-08 2.3E-13 109.9 9.1 86 32-125 102-187 (335)
48 KOG0144 RNA-binding protein CU 98.8 3.5E-09 7.6E-14 117.6 4.8 85 27-120 120-207 (510)
49 KOG0132 RNA polymerase II C-te 98.8 1.4E-08 3E-13 118.7 8.4 103 20-144 406-512 (894)
50 KOG0127 Nucleolar protein fibr 98.8 1.6E-08 3.5E-13 114.8 8.7 80 31-119 117-196 (678)
51 KOG0130 RNA-binding protein RB 98.7 1.7E-08 3.7E-13 99.1 6.2 86 25-118 66-151 (170)
52 TIGR01642 U2AF_lg U2 snRNP aux 98.7 4.3E-08 9.4E-13 108.6 9.1 83 31-118 409-501 (509)
53 KOG0127 Nucleolar protein fibr 98.7 3.6E-08 7.9E-13 112.1 8.5 115 32-155 293-424 (678)
54 KOG0117 Heterogeneous nuclear 98.7 3.4E-08 7.5E-13 110.3 7.1 71 32-118 260-330 (506)
55 KOG0145 RNA-binding protein EL 98.5 1.7E-07 3.7E-12 99.7 7.9 111 30-159 40-150 (360)
56 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.3E-07 2.9E-12 107.8 7.1 78 33-118 407-484 (940)
57 KOG0147 Transcriptional coacti 98.5 1E-07 2.3E-12 108.4 6.2 78 34-119 281-358 (549)
58 KOG0144 RNA-binding protein CU 98.5 2.4E-07 5.3E-12 103.4 6.9 78 33-118 36-116 (510)
59 KOG0109 RNA-binding protein LA 98.4 2.1E-07 4.6E-12 100.0 5.1 71 33-119 4-74 (346)
60 KOG0124 Polypyrimidine tract-b 98.4 2.7E-07 5.7E-12 101.5 5.0 75 32-114 114-188 (544)
61 KOG0146 RNA-binding protein ET 98.4 3.2E-07 7E-12 97.9 5.1 82 31-120 285-366 (371)
62 KOG0123 Polyadenylate-binding 98.4 9.5E-07 2.1E-11 97.7 8.5 72 34-116 79-150 (369)
63 KOG0131 Splicing factor 3b, su 98.4 5.5E-07 1.2E-11 91.9 6.0 89 21-119 88-177 (203)
64 KOG0153 Predicted RNA-binding 98.3 9E-07 1.9E-11 96.9 7.1 74 32-119 229-303 (377)
65 KOG0109 RNA-binding protein LA 98.3 5.3E-07 1.1E-11 97.1 5.2 76 31-122 78-153 (346)
66 KOG0110 RNA-binding protein (R 98.3 1.6E-06 3.5E-11 101.2 8.8 123 29-159 513-636 (725)
67 KOG0123 Polyadenylate-binding 98.3 1.7E-06 3.8E-11 95.7 8.6 81 33-127 3-83 (369)
68 KOG1548 Transcription elongati 98.3 2.4E-06 5.3E-11 93.6 8.7 63 52-123 294-358 (382)
69 KOG0533 RRM motif-containing p 98.2 2.3E-06 4.9E-11 90.5 7.9 76 32-116 84-159 (243)
70 KOG0151 Predicted splicing reg 98.2 2.1E-06 4.6E-11 100.2 7.3 108 30-144 173-289 (877)
71 KOG4208 Nucleolar RNA-binding 98.2 3.8E-06 8.1E-11 87.1 7.9 78 31-116 49-127 (214)
72 KOG0415 Predicted peptidyl pro 98.2 2E-06 4.2E-11 94.7 5.9 93 17-117 224-317 (479)
73 KOG4205 RNA-binding protein mu 98.2 1.3E-06 2.9E-11 94.9 3.9 75 30-113 5-79 (311)
74 KOG1548 Transcription elongati 98.1 8.9E-06 1.9E-10 89.3 8.5 90 24-122 127-224 (382)
75 KOG0124 Polypyrimidine tract-b 98.0 1.2E-05 2.6E-10 88.9 6.9 79 32-118 211-289 (544)
76 KOG4660 Protein Mei2, essentia 97.9 6.3E-06 1.4E-10 94.5 4.0 88 19-119 63-150 (549)
77 KOG4205 RNA-binding protein mu 97.9 1.2E-05 2.6E-10 87.7 5.7 84 32-124 98-181 (311)
78 KOG0106 Alternative splicing f 97.8 1.9E-05 4E-10 82.6 3.6 71 33-119 3-73 (216)
79 KOG0110 RNA-binding protein (R 97.8 2E-05 4.3E-10 92.4 4.2 80 31-118 613-692 (725)
80 KOG0147 Transcriptional coacti 97.7 4.5E-05 9.8E-10 87.6 6.6 76 52-141 471-547 (549)
81 KOG2202 U2 snRNP splicing fact 97.7 1.8E-05 4E-10 84.1 2.3 78 57-141 92-175 (260)
82 KOG1995 Conserved Zn-finger pr 97.7 4.7E-05 1E-09 83.9 5.1 98 27-132 62-167 (351)
83 KOG0146 RNA-binding protein ET 97.6 9E-05 1.9E-09 79.8 6.8 96 11-122 6-104 (371)
84 KOG4212 RNA-binding protein hn 97.6 8.7E-05 1.9E-09 83.7 6.7 73 30-115 535-607 (608)
85 KOG0116 RasGAP SH3 binding pro 97.6 8.9E-05 1.9E-09 83.8 6.6 80 34-122 291-370 (419)
86 KOG4454 RNA binding protein (R 97.5 3.2E-05 7E-10 81.2 1.7 73 33-115 11-83 (267)
87 KOG4209 Splicing factor RNPS1, 97.5 0.00021 4.4E-09 75.3 6.7 82 29-119 99-180 (231)
88 KOG1190 Polypyrimidine tract-b 97.5 0.0003 6.4E-09 79.1 8.1 103 31-160 297-399 (492)
89 KOG4212 RNA-binding protein hn 97.4 0.00046 9.9E-09 78.2 7.9 78 28-114 40-119 (608)
90 KOG1996 mRNA splicing factor [ 97.3 0.00031 6.7E-09 76.4 5.2 66 52-121 304-370 (378)
91 PF11608 Limkain-b1: Limkain b 97.2 0.0012 2.6E-08 61.2 7.9 73 31-118 2-76 (90)
92 KOG1457 RNA binding protein (c 97.2 0.0011 2.4E-08 70.2 8.5 80 32-118 35-117 (284)
93 KOG0120 Splicing factor U2AF, 97.1 0.00091 2E-08 77.2 7.5 68 52-121 427-495 (500)
94 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.00058 1.2E-08 64.0 4.5 76 31-111 6-83 (100)
95 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0018 4E-08 54.0 4.9 52 32-98 2-53 (53)
96 PF08777 RRM_3: RNA binding mo 96.8 0.0028 6E-08 59.5 6.4 58 33-104 3-60 (105)
97 KOG4211 Splicing factor hnRNP- 96.7 0.01 2.2E-07 68.3 10.7 72 33-116 12-83 (510)
98 PF04059 RRM_2: RNA recognitio 96.6 0.015 3.3E-07 54.5 9.4 82 31-119 1-87 (97)
99 KOG2314 Translation initiation 96.5 0.0039 8.5E-08 72.6 6.3 77 31-113 58-138 (698)
100 KOG1365 RNA-binding protein Fu 96.2 0.0056 1.2E-07 68.9 4.7 84 19-113 270-356 (508)
101 KOG4210 Nuclear localization s 96.1 0.0032 6.9E-08 68.2 2.6 79 32-119 185-264 (285)
102 KOG1456 Heterogeneous nuclear 96.0 0.043 9.4E-07 61.9 10.7 77 31-119 287-363 (494)
103 KOG0226 RNA-binding proteins [ 95.8 0.0081 1.8E-07 64.8 3.9 76 32-115 191-266 (290)
104 KOG3152 TBP-binding protein, a 95.8 0.0083 1.8E-07 64.7 3.9 76 30-110 73-157 (278)
105 KOG0106 Alternative splicing f 95.8 0.0055 1.2E-07 64.5 2.4 79 19-113 84-165 (216)
106 KOG1190 Polypyrimidine tract-b 95.6 0.022 4.8E-07 64.7 6.7 71 34-116 153-225 (492)
107 KOG0120 Splicing factor U2AF, 95.5 0.011 2.3E-07 68.7 3.9 83 26-116 284-366 (500)
108 KOG0129 Predicted RNA-binding 95.4 0.027 5.8E-07 65.3 6.3 106 24-137 363-487 (520)
109 KOG1456 Heterogeneous nuclear 95.0 0.19 4E-06 57.1 11.0 83 36-131 127-211 (494)
110 KOG4285 Mitotic phosphoprotein 94.2 0.074 1.6E-06 58.8 5.7 64 32-111 198-261 (350)
111 KOG4211 Splicing factor hnRNP- 94.2 0.097 2.1E-06 60.7 6.8 73 32-114 104-177 (510)
112 KOG4307 RNA binding protein RB 94.0 0.13 2.7E-06 61.8 7.4 74 33-115 869-943 (944)
113 KOG1457 RNA binding protein (c 93.9 0.052 1.1E-06 58.1 3.6 63 32-106 211-273 (284)
114 KOG4206 Spliceosomal protein s 93.2 0.23 5E-06 52.8 7.1 77 28-117 143-220 (221)
115 KOG2416 Acinus (induces apopto 93.2 0.061 1.3E-06 63.4 3.0 74 31-118 444-521 (718)
116 PF08952 DUF1866: Domain of un 93.1 0.23 4.9E-06 50.1 6.5 53 52-118 54-106 (146)
117 KOG0129 Predicted RNA-binding 93.0 0.3 6.4E-06 57.1 8.0 81 32-119 260-343 (520)
118 KOG0112 Large RNA-binding prot 92.6 0.14 3E-06 62.9 4.9 95 23-131 447-545 (975)
119 PF10309 DUF2414: Protein of u 90.1 0.92 2E-05 40.0 6.2 56 29-101 3-62 (62)
120 PF04847 Calcipressin: Calcipr 89.7 0.56 1.2E-05 48.5 5.4 56 52-118 13-70 (184)
121 KOG0115 RNA-binding protein p5 89.6 0.5 1.1E-05 51.5 5.1 69 26-103 26-94 (275)
122 KOG0128 RNA-binding protein SA 89.0 0.17 3.6E-06 61.8 1.2 77 30-115 735-811 (881)
123 KOG1365 RNA-binding protein Fu 88.9 0.94 2E-05 51.8 6.7 58 34-100 164-225 (508)
124 PF08675 RNA_bind: RNA binding 88.8 1.2 2.6E-05 41.7 6.3 56 31-102 8-63 (87)
125 KOG1855 Predicted RNA-binding 88.5 0.41 9E-06 55.1 3.7 82 29-114 229-319 (484)
126 KOG4307 RNA binding protein RB 88.3 0.31 6.7E-06 58.7 2.7 82 24-114 425-509 (944)
127 KOG2135 Proteins containing th 86.9 0.29 6.3E-06 56.8 1.4 75 28-116 369-443 (526)
128 KOG4849 mRNA cleavage factor I 85.4 0.77 1.7E-05 52.0 3.6 76 30-111 79-154 (498)
129 KOG2193 IGF-II mRNA-binding pr 82.3 1.5 3.2E-05 50.8 4.3 77 32-122 2-79 (584)
130 PF11767 SET_assoc: Histone ly 81.8 2 4.3E-05 38.2 4.0 29 84-112 36-64 (66)
131 KOG0112 Large RNA-binding prot 81.8 0.36 7.8E-06 59.4 -0.8 78 31-117 372-449 (975)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 81.8 1.8 3.9E-05 44.3 4.3 70 31-106 7-80 (176)
133 KOG2591 c-Mpl binding protein, 80.0 2.3 5E-05 50.7 4.8 86 22-125 165-255 (684)
134 KOG4676 Splicing factor, argin 79.5 1.9 4.1E-05 49.6 3.9 74 33-112 9-82 (479)
135 KOG0128 RNA-binding protein SA 78.8 0.23 4.9E-06 60.7 -3.6 70 30-107 666-735 (881)
136 PF15023 DUF4523: Protein of u 78.4 8.1 0.00018 39.7 7.5 70 32-115 87-158 (166)
137 PF10650 zf-C3H1: Putative zin 74.0 1.7 3.8E-05 31.9 1.1 20 120-139 2-21 (23)
138 KOG2193 IGF-II mRNA-binding pr 70.2 0.38 8.2E-06 55.4 -4.4 71 33-115 82-153 (584)
139 KOG4574 RNA-binding protein (c 69.2 2.9 6.4E-05 51.7 2.3 82 23-119 291-374 (1007)
140 KOG4210 Nuclear localization s 62.6 8 0.00017 42.6 3.8 109 32-154 89-203 (285)
141 PF14608 zf-CCCH_2: Zinc finge 58.6 5.9 0.00013 27.4 1.3 11 129-139 7-18 (19)
142 KOG0105 Alternative splicing f 53.2 33 0.00072 36.8 6.2 61 31-106 115-175 (241)
143 KOG0804 Cytoplasmic Zn-finger 48.9 37 0.00081 40.2 6.3 67 31-107 74-141 (493)
144 KOG1492 C3H1-type Zn-finger pr 45.4 18 0.00038 39.4 3.0 27 119-146 262-288 (377)
145 smart00356 ZnF_C3H1 zinc finge 45.0 18 0.0004 25.4 2.1 23 118-141 4-27 (27)
146 PF03880 DbpA: DbpA RNA bindin 43.5 47 0.001 29.3 4.9 60 40-116 10-74 (74)
147 PF00642 zf-CCCH: Zinc finger 40.5 11 0.00024 27.8 0.4 24 117-140 2-26 (27)
148 PF07576 BRAP2: BRCA1-associat 40.2 1.6E+02 0.0035 28.6 8.3 68 31-107 12-80 (110)
149 COG5178 PRP8 U5 snRNP spliceos 28.3 31 0.00068 44.8 1.7 19 784-803 110-128 (2365)
150 KOG4213 RNA-binding protein La 28.3 52 0.0011 35.1 3.0 63 29-102 109-171 (205)
151 KOG3702 Nuclear polyadenylated 27.5 58 0.0013 40.1 3.7 97 28-141 509-605 (681)
152 PF02714 DUF221: Domain of unk 26.5 74 0.0016 34.4 3.9 34 84-119 1-34 (325)
153 COG0724 RNA-binding proteins ( 26.0 75 0.0016 30.7 3.6 80 21-108 215-294 (306)
154 PF08747 DUF1788: Domain of un 25.1 38 0.00083 33.4 1.4 26 892-917 97-125 (126)
155 KOG2318 Uncharacterized conser 21.8 2.6E+02 0.0056 34.5 7.4 78 31-108 174-295 (650)
No 1
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=100.00 E-value=1.1e-46 Score=399.00 Aligned_cols=155 Identities=46% Similarity=0.894 Sum_probs=141.7
Q ss_pred hHHHHHhhhcCCCCccCccCCCCccccccCeEEEeCCCCCCChhH---HHHHHHhhccCcceEEEEEeecCCCCcccCCC
Q 002482 3 SERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADED---LLQRKEYFGQYGKVLKVSISRTATGDIQHSAN 79 (917)
Q Consensus 3 ~ekk~K~qk~K~k~~e~Rk~LanVRVIQKNLVYV~GLP~sIAeED---LLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~ 79 (917)
.|+|+++..+|+.+-.+||||+++||||||||||+||++.+++|+ +||++|||||||+|+||+|++...... ...
T Consensus 86 ~erk~rekerke~e~~nrkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~n--st~ 163 (480)
T COG5175 86 EERKMREKERKEAEGQNRKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLN--STA 163 (480)
T ss_pred hhhhccHHHHhhhhcccccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccc--ccc
Confidence 578888888999999999999999999999999999999999999 899999999999999999997653221 122
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEccCCCccccccCCCCCCCCccccccCCCCCCCCcHHHHHHhhhh
Q 002482 80 NSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 159 (917)
Q Consensus 80 prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~tr 159 (917)
...++||||.++|||++||.++||..+|||.|||+|||||||++||||++|+||+||||||+|+++|+|||+||....+.
T Consensus 164 ~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~qh~ 243 (480)
T COG5175 164 SHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQHK 243 (480)
T ss_pred ccceEEEEecchHHHHHHHHHhccccccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999976544
No 2
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=100.00 E-value=6.7e-43 Score=370.79 Aligned_cols=257 Identities=38% Similarity=0.610 Sum_probs=208.7
Q ss_pred HHHHHhhhcCCCCccCccCCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcE
Q 002482 4 ERRQKSQKAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCC 83 (917)
Q Consensus 4 ekk~K~qk~K~k~~e~Rk~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGs 83 (917)
+.|+|+++.|.+..++|+||+++||||||+|||+||+..+++|++|++.+||||||+|.||++.++... +......+.
T Consensus 50 ~~kk~e~e~k~~~~s~r~~ls~~rvVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~--~s~~~~~~s 127 (327)
T KOG2068|consen 50 KEKKKEQEIKRKLSSNRKHLSGVRVVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSS--SSSSGGTCS 127 (327)
T ss_pred hhhhhHHHHhhhhhhcccccccchhhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCccc--ccCCCCCCc
Confidence 556699999999999999999999999999999999999999999999999999999999999987641 123356778
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEccCCCccccccCCCCCCCCccccccCCCCCCCCcHHHHHHhhhhhhhh
Q 002482 84 VYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRSRVQ 163 (917)
Q Consensus 84 AFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~tr~~~q 163 (917)
+||||.++|||.+||+.++|+.++||.|+|+|||||||++||+++.|.|++||||||+++++|+||||||+.++++. +
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~~~~~--~ 205 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSAKHRE--S 205 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHHhhhh--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999994 6
Q ss_pred HhhccCccccccCCCCCCCCCcccccccccccCcCcccCCCccccCCCCCCCCCCC---CCCCCCCCccccccccccCCC
Q 002482 164 QIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPNNGSCADIV---AGKSNSLPTAASWVMRVSATL 240 (917)
Q Consensus 164 ~~~g~~~~~~~rsg~~lPPP~~~~~~~~~~s~~~p~~k~~s~~~~~~~~~s~p~~~---~~~~~aLP~sAsW~~r~~~~~ 240 (917)
+..+.++.++|..+..+|+|++.+... .+ .|..+.............||-.. ..++++||++++|++..-
T Consensus 206 ~~~~~~n~~~~~~~~~~p~~l~~~~~~--~s--~p~~~~~~~~~~~v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~--- 278 (327)
T KOG2068|consen 206 SRKQTSNIARRSDDKLRPQPLPNLEKQ--RS--APDAQLDFSSVTSVPPSCPICYEDLDLTDSNFLPCPCGFRLCLF--- 278 (327)
T ss_pred cccccccceeccCcccCCCcccccccc--cC--CcccccCCccccccCCCCCCCCCcccccccccccccccccchhh---
Confidence 677788888999999999999988765 22 56654443333344444444443 778999999999995332
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCccceeee
Q 002482 241 PTNKNLSGPVRPPSNQPKASNGPQVPGTEVV 271 (917)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~v~ 271 (917)
.-+|+..+-...+-.+.....++.+|++.+-
T Consensus 279 ~~~t~~~~~~~~~~~rk~~~~~t~~s~~~~~ 309 (327)
T KOG2068|consen 279 CHKTISDGDGRCPGCRKPYERNTKKSETSVQ 309 (327)
T ss_pred hhhcccccCCCCCccCCccccCccccccccc
Confidence 2334443344444444444555555555554
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=5.8e-14 Score=135.37 Aligned_cols=89 Identities=19% Similarity=0.382 Sum_probs=77.2
Q ss_pred CCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 002482 22 HLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 101 (917)
Q Consensus 22 ~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaL 101 (917)
.+..+|.+. +.|||+|||+.+++++| +++|.+||+|.+|.|.++..+. ..+++|||+|.+.|+|++||+.|
T Consensus 26 ~~~~~~~~~-~~lfVgnL~~~~te~~L---~~~F~~~G~I~~v~i~~d~~tg-----~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 26 MLGSLRLMS-TKLFIGGLSWGTDDASL---RDAFAHFGDVVDAKVIVDRETG-----RSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred ccccccCCC-CEEEEeCCCCCCCHHHH---HHHHhcCCCeEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHc
Confidence 445555554 46999999999999998 7999999999999998876432 46889999999999999999999
Q ss_pred CCCccCCeeEEEeEccCC
Q 002482 102 HSYILDGRPLRACFGTTK 119 (917)
Q Consensus 102 NG~~LDGR~LRASfGTTK 119 (917)
||..|+||.|+|.+++.+
T Consensus 97 ng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 97 DGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCCEECCEEEEEEeCCcC
Confidence 999999999999998764
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=4.9e-14 Score=114.11 Aligned_cols=70 Identities=24% Similarity=0.686 Sum_probs=63.8
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
|||+|||+.+++++| +++|++||+|..|.|..+..+ ..+++|||+|.+.++|.+|++.+||..++|+.||
T Consensus 1 l~v~nlp~~~t~~~l---~~~f~~~g~i~~~~~~~~~~~------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEEL---RDFFSQFGKIESIKVMRNSSG------KSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHH---HHHHHTTSTEEEEEEEEETTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHH---HHHHHHhhhcccccccccccc------cccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999998 699999999999999876322 3578999999999999999999999999999997
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.51 E-value=6.1e-14 Score=147.01 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=73.0
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.|||+|||+.+++++| +++|++||.|..|.|.++..+ +..+|+|||+|.+.++|.+||++|||+.++||.|+
T Consensus 271 ~lfV~NL~~~~~e~~L---~~~F~~fG~v~~v~i~~d~~t-----~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 271 CIFVYNLSPDTDETVL---WQLFGPFGAVQNVKIIRDLTT-----NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred EEEEeCCCCCCCHHHH---HHHHHhCCCeEEEEEeEcCCC-----CCccceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 5999999999988887 699999999999999987643 24689999999999999999999999999999999
Q ss_pred EeEccCCC
Q 002482 113 ACFGTTKY 120 (917)
Q Consensus 113 ASfGTTKY 120 (917)
|+|.+.|-
T Consensus 343 V~~~~~~~ 350 (352)
T TIGR01661 343 VSFKTNKA 350 (352)
T ss_pred EEEccCCC
Confidence 99999873
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=1.5e-13 Score=143.98 Aligned_cols=81 Identities=15% Similarity=0.384 Sum_probs=73.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
+++|||+|||+.++++|| +++|++||+|..|.|.+++.+. ..+|+|||+|.+.|||.+||..|||..+.|+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l---~~~F~~~G~i~~v~i~~d~~~g-----~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEI---RSLFTSIGEIESCKLVRDKVTG-----QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHH---HHHHHccCCEEEEEEEEcCCCC-----ccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 688999999999999998 7999999999999999876432 36789999999999999999999999999999
Q ss_pred EEEeEccCC
Q 002482 111 LRACFGTTK 119 (917)
Q Consensus 111 LRASfGTTK 119 (917)
|+|.|+..+
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999998643
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=2e-12 Score=140.50 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=73.7
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
-..++|||++||+++++++| +++|.+||+|++|+|.++..+. ..+++|||+|.++|+|.+||+.|||..+.|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L---~~lF~~~G~V~~v~i~~d~~tg-----~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDREL---YALFRTIGPINTCRIMRDYKTG-----YSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHH---HHHHHhcCCEEEEEEEecCCCC-----ccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 34678999999999999998 7999999999999998876432 357899999999999999999999999999
Q ss_pred eeEEEeEccC
Q 002482 109 RPLRACFGTT 118 (917)
Q Consensus 109 R~LRASfGTT 118 (917)
+.|+|.|++.
T Consensus 177 r~i~V~~a~p 186 (346)
T TIGR01659 177 KRLKVSYARP 186 (346)
T ss_pred ceeeeecccc
Confidence 9999999864
No 8
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=4.2e-12 Score=104.99 Aligned_cols=70 Identities=34% Similarity=0.678 Sum_probs=62.1
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
|||+|||+.+++++| .++|.+||.|.+|.+.+++.+ ..+++|||+|.++++|.+|++..+|..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l---~~~f~~~g~v~~v~~~~~~~~------~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDL---RNFFSRFGPVEKVRLIKNKDG------QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHH---HHHCTTSSBEEEEEEEESTTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHH---HHHHHhcCCcceEEEEeeecc------ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999998 699999999999999887542 3578999999999999999999999999999986
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.8e-12 Score=134.55 Aligned_cols=90 Identities=16% Similarity=0.344 Sum_probs=78.5
Q ss_pred CccCccCCCCcccc-----ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCC
Q 002482 16 PSEGRMHLTNVRVI-----QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90 (917)
Q Consensus 16 ~~e~Rk~LanVRVI-----QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~ 90 (917)
..++++.|.--.|. .+++|||+||+.-++|++| ++.|.+||.|.+|.|.+++ |+|||.|++
T Consensus 144 ~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~m---r~~Fs~fG~I~EVRvFk~q-----------GYaFVrF~t 209 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLM---RQTFSPFGPIQEVRVFKDQ-----------GYAFVRFET 209 (321)
T ss_pred cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHH---HHhcccCCcceEEEEeccc-----------ceEEEEecc
Confidence 45677777666665 4678999999998887665 7899999999999998763 589999999
Q ss_pred HHHHHHHHHHhCCCccCCeeEEEeEccCC
Q 002482 91 EDDAIRCIQSVHSYILDGRPLRACFGTTK 119 (917)
Q Consensus 91 ~EDA~rAIqaLNG~~LDGR~LRASfGTTK 119 (917)
+|.|.+||..|||..+.|..+||+||++.
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999999999875
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.4e-11 Score=96.97 Aligned_cols=72 Identities=31% Similarity=0.646 Sum_probs=64.6
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
+|||.|||..+++++| +++|.+||+|..|.+.++. + .+.+.|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l---~~~~~~~g~v~~~~~~~~~-~------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDL---KELFSKFGPIESVKIPKDT-G------KSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHH---HHHHHhcCCEEEEEEecCC-C------CCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 4899999999999998 6999999999999998765 2 2567899999999999999999999999999998
Q ss_pred Ee
Q 002482 113 AC 114 (917)
Q Consensus 113 AS 114 (917)
|.
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 73
No 11
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=116.36 Aligned_cols=76 Identities=24% Similarity=0.506 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
..++||.|||++++.||+ +|+||+||.|..|.|-.++. .+|.|||.|++.+||.+|++.|.|+.+++|.
T Consensus 18 nriLyirNLp~~ITseem---ydlFGkyg~IrQIRiG~~k~--------TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEM---YDLFGKYGTIRQIRIGNTKE--------TRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred heeEEEecCCccccHHHH---HHHhhcccceEEEEecCccC--------cCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 357999999999999999 79999999999999976654 3679999999999999999999999999999
Q ss_pred EEEeEcc
Q 002482 111 LRACFGT 117 (917)
Q Consensus 111 LRASfGT 117 (917)
|.|-|-+
T Consensus 87 l~vlyyq 93 (124)
T KOG0114|consen 87 LVVLYYQ 93 (124)
T ss_pred EEEEecC
Confidence 9998754
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.27 E-value=1.3e-11 Score=130.36 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=68.3
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
..++|||+|||+.+++++| +++|++||+|.+|.|.++.. .+++|||||.++++|..||. |||..|.||
T Consensus 3 ~~rtVfVgNLs~~tTE~dL---refFS~~G~I~~V~I~~d~~--------~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDI---KEFFSFSGDIEYVEMQSENE--------RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHH---HHHHHhcCCeEEEEEeecCC--------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 3568999999999999998 79999999999999987642 35799999999999999995 999999999
Q ss_pred eEEEeEcc
Q 002482 110 PLRACFGT 117 (917)
Q Consensus 110 ~LRASfGT 117 (917)
.|+|..+.
T Consensus 71 ~V~Vt~a~ 78 (260)
T PLN03120 71 SVTITPAE 78 (260)
T ss_pred eEEEEecc
Confidence 99999853
No 13
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=6e-12 Score=135.57 Aligned_cols=78 Identities=26% Similarity=0.466 Sum_probs=72.5
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
+.|||.|||++..|.|| +.+|+|||+|.+|.|..+..| ++||+||||++.+||+||-++|||+.++||+|
T Consensus 97 kRLhVSNIPFrFRdpDL---~aMF~kfG~VldVEIIfNERG-------SKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDL---RAMFEKFGKVLDVEIIFNERG-------SKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred ceeEeecCCccccCccH---HHHHHhhCceeeEEEEeccCC-------CCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 56899999999999998 799999999999999877543 57899999999999999999999999999999
Q ss_pred EEeEccCC
Q 002482 112 RACFGTTK 119 (917)
Q Consensus 112 RASfGTTK 119 (917)
.|.-+|.+
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99999887
No 14
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=8.6e-12 Score=125.50 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=71.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
...|||+||+..+++.|| ...|++||+|.+|+|.++ |.+||||+|+++.||++|+.+|||..|+|..
T Consensus 10 ~~kVYVGnL~~~a~k~eL---E~~F~~yG~lrsvWvArn----------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKREL---ERAFSKYGPLRSVWVARN----------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CceEEeccCCCCcchHHH---HHHHHhcCcceeEEEeec----------CCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 467999999999999998 799999999999999874 4579999999999999999999999999999
Q ss_pred EEEeEccCCCc
Q 002482 111 LRACFGTTKYC 121 (917)
Q Consensus 111 LRASfGTTKYC 121 (917)
|+|.+.+-++-
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999877655
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.26 E-value=7.7e-12 Score=144.53 Aligned_cols=77 Identities=14% Similarity=0.374 Sum_probs=69.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..|||+||++.+++++| +++|.+||+|.+|.|.++..+. .++|+|||+|.+.|+|.+||+.|||..++||.|
T Consensus 108 ~rLfVGnLp~~~tEe~L---r~lF~~fG~I~sV~I~~D~~Tg-----kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~I 179 (612)
T TIGR01645 108 CRVYVGSISFELREDTI---RRAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 179 (612)
T ss_pred CEEEEcCCCCCCCHHHH---HHHHHccCCEEEEEEeecCCCC-----CcCCeEEEEeCcHHHHHHHHHhcCCeEEeccee
Confidence 56999999999999998 7999999999999998876432 468899999999999999999999999999999
Q ss_pred EEeEc
Q 002482 112 RACFG 116 (917)
Q Consensus 112 RASfG 116 (917)
+|.+.
T Consensus 180 kV~rp 184 (612)
T TIGR01645 180 KVGRP 184 (612)
T ss_pred eeccc
Confidence 99864
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.25 E-value=1.1e-11 Score=139.51 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=74.1
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
.+...|||+||++.+++++| +++|++||+|.+|+|.++..+ ..+|+|||+|.+.|+|.+||..|||..++|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L---~~~F~~~G~i~~~~i~~d~~g------~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKL---RELFSECGEITSAKVMLDEKG------VSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred cCCCEEEEeCCCCccCHHHH---HHHHHhcCCeEEEEEEECCCC------CcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 34567999999999999998 799999999999999987543 367899999999999999999999999999
Q ss_pred eeEEEeEccCC
Q 002482 109 RPLRACFGTTK 119 (917)
Q Consensus 109 R~LRASfGTTK 119 (917)
|.|+|.|+..|
T Consensus 354 k~l~V~~a~~k 364 (562)
T TIGR01628 354 KPLYVALAQRK 364 (562)
T ss_pred ceeEEEeccCc
Confidence 99999999766
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.25 E-value=2.2e-11 Score=132.54 Aligned_cols=83 Identities=22% Similarity=0.543 Sum_probs=73.1
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
++..+|||+|||+.+++|+| +++|++||+|++|.|.+++.+. .++++|||+|.+.|+|++||+.|||..++|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L---~~~F~~fG~V~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQL---DTIFGKYGQIVQKNILRDKLTG-----TPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cccceeEEeCCCCcccHHHH---HHHHHhcCCEEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 35678999999999999998 7999999999999998876432 467899999999999999999999999987
Q ss_pred --eeEEEeEccCC
Q 002482 109 --RPLRACFGTTK 119 (917)
Q Consensus 109 --R~LRASfGTTK 119 (917)
+.|+|.++..+
T Consensus 263 ~~~~l~V~~a~~~ 275 (346)
T TIGR01659 263 GSQPLTVRLAEEH 275 (346)
T ss_pred CceeEEEEECCcc
Confidence 68999998765
No 18
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=4.4e-11 Score=113.34 Aligned_cols=80 Identities=26% Similarity=0.550 Sum_probs=72.4
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
...|||+|||+.+++++| +++|.+||.|..|.|..+... ...+|+|||+|.+.++|..||..++|..+.||.
T Consensus 115 ~~~l~v~nL~~~~~~~~l---~~~F~~~g~~~~~~~~~d~~~-----~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDL---RELFKKFGPVKRVRLVRDRET-----GKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHH---HHHHHhcCceeEEEeeecccc-----CccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999998 699999999999999887532 246889999999999999999999999999999
Q ss_pred EEEeEccC
Q 002482 111 LRACFGTT 118 (917)
Q Consensus 111 LRASfGTT 118 (917)
|+|.+...
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999653
No 19
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.1e-11 Score=93.86 Aligned_cols=74 Identities=31% Similarity=0.629 Sum_probs=66.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.|||.|||+.+++++| .++|.+||.|.++.+..+..+ .+.+.|||+|.+.++|..|++.++|..++|+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i---~~~~~~~g~i~~~~~~~~~~~------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDL---RELFSKFGKVESVRIVRDKDT------KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHH---HHHHHhcCCEEEEEEeeCCCC------CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4899999999999998 699999999999999876543 2577999999999999999999999999999999
Q ss_pred EeE
Q 002482 113 ACF 115 (917)
Q Consensus 113 ASf 115 (917)
|.|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 875
No 20
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.6e-12 Score=130.53 Aligned_cols=85 Identities=18% Similarity=0.343 Sum_probs=75.7
Q ss_pred ccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 002482 26 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 105 (917)
Q Consensus 26 VRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~ 105 (917)
..-.||++|||+||..++++ .+| +..|-.||.|++|.|+.+.... ..++||||+|...|||..||..||+.+
T Consensus 5 ~~a~~KrtlYVGGladeVte-kvL--haAFIPFGDI~dIqiPlDyesq-----kHRgFgFVefe~aEDAaaAiDNMnesE 76 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTE-KVL--HAAFIPFGDIKDIQIPLDYESQ-----KHRGFGFVEFEEAEDAAAAIDNMNESE 76 (298)
T ss_pred cccccceeEEeccchHHHHH-HHH--Hhccccccchhhcccccchhcc-----cccceeEEEeeccchhHHHhhcCchhh
Confidence 34568999999999999965 566 7999999999999999887642 468999999999999999999999999
Q ss_pred cCCeeEEEeEccC
Q 002482 106 LDGRPLRACFGTT 118 (917)
Q Consensus 106 LDGR~LRASfGTT 118 (917)
|.||+|||.|+..
T Consensus 77 L~GrtirVN~AkP 89 (298)
T KOG0111|consen 77 LFGRTIRVNLAKP 89 (298)
T ss_pred hcceeEEEeecCC
Confidence 9999999999965
No 21
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.3e-11 Score=128.38 Aligned_cols=76 Identities=20% Similarity=0.436 Sum_probs=67.3
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
+.|||+||+|++.+|+| ++||.|||+|++.+|..|+.+. +.+|++||||.+.|.|.||.+..| -+||||+-
T Consensus 13 TKifVggL~w~T~~~~l---~~yFeqfGeI~eavvitd~~t~-----rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~a 83 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETL---RRYFEQFGEIVEAVVITDKNTG-----RSKGYGFVTFRDAEAATRACKDPN-PIIDGRKA 83 (247)
T ss_pred EEEEEcCcccccchHHH---HHHHHHhCceEEEEEEeccCCc-----cccceeeEEeecHHHHHHHhcCCC-Cccccccc
Confidence 67999999999999987 7999999999999999887643 478899999999999999999876 58999998
Q ss_pred EEeEc
Q 002482 112 RACFG 116 (917)
Q Consensus 112 RASfG 116 (917)
.|..+
T Consensus 84 NcnlA 88 (247)
T KOG0149|consen 84 NCNLA 88 (247)
T ss_pred ccchh
Confidence 87654
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=3.6e-11 Score=139.12 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=73.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
+.|||+||++.+++++| +++|++||+|++|.|.++..+. ..+|+|||+|.+.++|.+||..|||+.++|+.|
T Consensus 205 ~rLfVgnLp~~vteedL---k~lFs~FG~I~svrl~~D~~tg-----ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~L 276 (612)
T TIGR01645 205 NRIYVASVHPDLSETDI---KSVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 276 (612)
T ss_pred ceEEeecCCCCCCHHHH---HHHHhhcCCeeEEEEEecCCCC-----CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 67999999999999997 7999999999999999876542 367899999999999999999999999999999
Q ss_pred EEeEccCCC
Q 002482 112 RACFGTTKY 120 (917)
Q Consensus 112 RASfGTTKY 120 (917)
||.++.++-
T Consensus 277 rV~kAi~pP 285 (612)
T TIGR01645 277 RVGKCVTPP 285 (612)
T ss_pred EEEecCCCc
Confidence 999998764
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.21 E-value=8e-11 Score=129.94 Aligned_cols=81 Identities=14% Similarity=0.261 Sum_probs=72.3
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
..+.|||+|||+.+++++| +++|.+||.|..|.|.++..++ ..+|+|||+|.+.++|..||+.|||..++|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l---~~~f~~~G~i~~~~~~~~~~~g-----~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQI---KELLESFGDLKAFNLIKDIATG-----LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4578999999999999988 6999999999999998775432 3678999999999999999999999999999
Q ss_pred eEEEeEccC
Q 002482 110 PLRACFGTT 118 (917)
Q Consensus 110 ~LRASfGTT 118 (917)
.|+|.++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 999999754
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=5.5e-11 Score=134.01 Aligned_cols=110 Identities=18% Similarity=0.409 Sum_probs=85.1
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.|||+|||+++++++| +++|++||.|.+|.|.++..+. ...|+|||+|.+.+||.+||..+|+..+.|+.|+
T Consensus 2 sl~VgnLp~~vte~~L---~~~F~~~G~v~~v~v~~d~~t~-----~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKL---YDLFKPFGPVLSVRVCRDSVTR-----RSLGYGYVNFQNPADAERALETMNFKRLGGKPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHH---HHHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEE
Confidence 6999999999999998 7999999999999999887532 3678999999999999999999999999999999
Q ss_pred EeEccCCCccccccCCCCCCCCccccccCCCCCCCCcHHHHHHhhhh
Q 002482 113 ACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 159 (917)
Q Consensus 113 ASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~tr 159 (917)
+.|.....- + ......+.|+.-+ ....|.++|.....+
T Consensus 74 i~~s~~~~~---~---~~~~~~~vfV~nL---p~~~~~~~L~~~F~~ 111 (562)
T TIGR01628 74 IMWSQRDPS---L---RRSGVGNIFVKNL---DKSVDNKALFDTFSK 111 (562)
T ss_pred eeccccccc---c---cccCCCceEEcCC---CccCCHHHHHHHHHh
Confidence 998643210 0 1112234554444 345677887765544
No 25
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=7e-11 Score=92.52 Aligned_cols=71 Identities=27% Similarity=0.596 Sum_probs=62.7
Q ss_pred EeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEe
Q 002482 36 IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 114 (917)
Q Consensus 36 V~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRAS 114 (917)
|.|||..+++++| +++|.+||.|..|.|..+... ..++++|||+|.+.++|.+||..++|..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l---~~~f~~~g~v~~~~i~~~~~~-----~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEEL---RELFSKFGKIESVRLVRDKDT-----GKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHH---HHHHHhhCCEeEEEEEeCCCC-----CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999998 699999999999999876532 2357899999999999999999999999999999874
No 26
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.18 E-value=4.1e-11 Score=123.85 Aligned_cols=83 Identities=18% Similarity=0.398 Sum_probs=75.5
Q ss_pred eEEEeCCCCCCChhHHHHH-HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 33 LVYIIGLPINLADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr-~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
++||.+|+..+..+||.|. +.+|+|||+|++|++.++.. -+|.|||.|.+.+.|..|+++|+|+.+.|+++
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K--------mRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK--------MRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC--------ccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 9999999999999887553 88999999999999987653 47899999999999999999999999999999
Q ss_pred EEeEccCCCccc
Q 002482 112 RACFGTTKYCHA 123 (917)
Q Consensus 112 RASfGTTKYCss 123 (917)
|+.|+.++.|..
T Consensus 83 riqyA~s~sdii 94 (221)
T KOG4206|consen 83 RIQYAKSDSDII 94 (221)
T ss_pred heecccCccchh
Confidence 999999997763
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=7.5e-11 Score=128.74 Aligned_cols=79 Identities=18% Similarity=0.472 Sum_probs=72.0
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
..+|||+|||..+++++| .++|++||+|.+|.|.++..+. ..+|+|||+|.+.++|.+||..|||+.+.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l---~~~f~~~G~i~~v~~~~d~~~g-----~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQEL---RQIFEPFGDIEDVQLHRDPETG-----RSKGFGFIQFHDAEEAKEALEVMNGFELAGRP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHH---HHHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhcCCcEECCEE
Confidence 578999999999999998 6999999999999998876532 35789999999999999999999999999999
Q ss_pred EEEeEcc
Q 002482 111 LRACFGT 117 (917)
Q Consensus 111 LRASfGT 117 (917)
|+|.|+.
T Consensus 258 i~v~~a~ 264 (457)
T TIGR01622 258 IKVGYAQ 264 (457)
T ss_pred EEEEEcc
Confidence 9999987
No 28
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.9e-11 Score=116.33 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=71.8
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
.+.++|||+||++.+++|.| +|+|++.|.|.+|+|-.++-.. .+.||+||.|...+||+.|++.++|+.||.
T Consensus 34 r~S~tvyVgNlSfyttEEqi---yELFs~cG~irriiMGLdr~kk-----tpCGFCFVeyy~~~dA~~AlryisgtrLdd 105 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQI---YELFSKCGDIRRIIMGLDRFKK-----TPCGFCFVEYYSRDDAEDALRYISGTRLDD 105 (153)
T ss_pred hhcceEEEeeeeeeecHHHH---HHHHHhccchheeEeccccCCc-----CccceEEEEEecchhHHHHHHHhccCcccc
Confidence 35789999999999999998 7999999999999997665432 478999999999999999999999999999
Q ss_pred eeEEEeE
Q 002482 109 RPLRACF 115 (917)
Q Consensus 109 R~LRASf 115 (917)
|+|++.|
T Consensus 106 r~ir~D~ 112 (153)
T KOG0121|consen 106 RPIRIDW 112 (153)
T ss_pred cceeeec
Confidence 9999986
No 29
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=1.2e-10 Score=93.97 Aligned_cols=55 Identities=22% Similarity=0.569 Sum_probs=49.5
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEc
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG 116 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfG 116 (917)
+++|++||+|.+|.+.++. ++.|||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 2 ~~~f~~fG~V~~i~~~~~~----------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKK----------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHTTTS-EEEEEEETTS----------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred hHHhCCcccEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 5899999999999997643 368999999999999999999999999999999985
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.13 E-value=3.6e-10 Score=123.49 Aligned_cols=116 Identities=19% Similarity=0.307 Sum_probs=86.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
..+|||+|||+.+++++| +++|++||+|..|.|.++..+. ..+|+|||+|.+.++|.+||. |+|..+.|+.
T Consensus 89 ~~~l~V~nlp~~~~~~~l---~~~F~~~G~v~~v~i~~d~~~~-----~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~ 159 (457)
T TIGR01622 89 DRTVFVLQLALKARERDL---YEFFSKVGKVRDVQCIKDRNSR-----RSKGVAYVEFYDVESVIKALA-LTGQMLLGRP 159 (457)
T ss_pred CcEEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHH-hCCCEECCee
Confidence 467999999999999998 6999999999999999876432 468899999999999999996 8999999999
Q ss_pred EEEeEccCCCcccc--cc--CCCCCCCCccccccCCCCCCCCcHHHHHHhhh
Q 002482 111 LRACFGTTKYCHAW--IR--NMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 158 (917)
Q Consensus 111 LRASfGTTKYCssF--LR--n~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~t 158 (917)
|+|.+...+....- .. .....+..++|+.-+. ...|+++|.....
T Consensus 160 i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~---~~~te~~l~~~f~ 208 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLH---FNITEQELRQIFE 208 (457)
T ss_pred eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCC---CCCCHHHHHHHHH
Confidence 99987543221110 00 0112224566666555 4578888876543
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.12 E-value=1e-10 Score=130.86 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=71.0
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCH--HHHHHHHHHhCCCccCCe
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSRE--DDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~--EDA~rAIqaLNG~~LDGR 109 (917)
..||||||++.++++|| .+.|++||.|.+|.|+++. .+|||||+|... +++.+||..|||..+.||
T Consensus 11 MRIYVGNLSydVTEDDL---ravFSeFGsVkdVEIpRET---------GRGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 11 VRLHVGGLGESVGRDDL---LKIFSPMGTVDAVEFVRTK---------GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred eEEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEeccc---------CCceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 56899999999999998 6899999999999999542 168999999987 789999999999999999
Q ss_pred eEEEeEccCCCcc
Q 002482 110 PLRACFGTTKYCH 122 (917)
Q Consensus 110 ~LRASfGTTKYCs 122 (917)
.|||.-+..+|-.
T Consensus 79 ~LKVNKAKP~YLe 91 (759)
T PLN03213 79 RLRLEKAKEHYLA 91 (759)
T ss_pred eeEEeeccHHHHH
Confidence 9999999877654
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.12 E-value=1.8e-10 Score=128.89 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=68.5
Q ss_pred ccCeEEEeCCCC-CCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 30 QRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 30 QKNLVYV~GLP~-sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
....|||+||++ .+++++| +++|++||.|.+|+|.+++ +++|||+|.+.++|.+||..|||..|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L---~~lF~~yG~V~~vki~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRL---FNLFCVYGNVERVKFMKNK----------KETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHH---HHHHHhcCCeEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346899999998 6888887 7999999999999998752 4699999999999999999999999999
Q ss_pred eeEEEeEccCC
Q 002482 109 RPLRACFGTTK 119 (917)
Q Consensus 109 R~LRASfGTTK 119 (917)
+.|+|+|+..+
T Consensus 341 ~~l~v~~s~~~ 351 (481)
T TIGR01649 341 KPLRVCPSKQQ 351 (481)
T ss_pred ceEEEEEcccc
Confidence 99999986443
No 33
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.8e-10 Score=120.74 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=75.4
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
-.++|=|.||+.+++++|| .|+|.+||.|.+|.|.+++.+. ..+|||||+|...|||++||..|||.-++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL---~eLf~~fg~i~rvylardK~TG-----~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDL---EELFRPFGPITRVYLARDKETG-----LSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ccceeEEecCccccChhHH---HHHhhccCccceeEEEEccccC-----cccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 4578899999999999998 7999999999999999988654 4789999999999999999999999999999
Q ss_pred eEEEeEccCC
Q 002482 110 PLRACFGTTK 119 (917)
Q Consensus 110 ~LRASfGTTK 119 (917)
+|+|.|.+.+
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999999865
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.11 E-value=6e-11 Score=122.11 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=72.2
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
-...|-|-||.+.++-++| +..|.+||+|-+|.|.++..+. .++|||||.|..+.||++|+++|||.+||||
T Consensus 12 gm~SLkVdNLTyRTspd~L---rrvFekYG~vgDVyIPrdr~Tr-----~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDL---RRVFEKYGRVGDVYIPRDRYTR-----QSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred cceeEEecceeccCCHHHH---HHHHHHhCcccceecccccccc-----cccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 3467889999999999887 7899999999999999987654 5789999999999999999999999999999
Q ss_pred eEEEeEcc
Q 002482 110 PLRACFGT 117 (917)
Q Consensus 110 ~LRASfGT 117 (917)
.|+|+++.
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99998764
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.09 E-value=2.1e-10 Score=132.29 Aligned_cols=89 Identities=19% Similarity=0.505 Sum_probs=76.3
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-Ce
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-GR 109 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD-GR 109 (917)
...|||+|||+++++++| .++|.+||+|.+|+|.++..+ .++++|||+|.+.|+|.+||+.|||..+. ||
T Consensus 58 ~~~lFVgnLp~~~tEd~L---~~~F~~~G~I~~vrl~~D~sG------~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr 128 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDEL---VPLFEKAGPIYELRLMMDFSG------QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR 128 (578)
T ss_pred CCEEEeCCCCCCCCHHHH---HHHHHhhCCEEEEEEEECCCC------CccceEEEEeCCHHHHHHHHHHcCCCeecCCc
Confidence 478999999999999998 799999999999999988543 36889999999999999999999999985 89
Q ss_pred eEEEeEccCCCccccccCCC
Q 002482 110 PLRACFGTTKYCHAWIRNMP 129 (917)
Q Consensus 110 ~LRASfGTTKYCssFLRn~~ 129 (917)
.|.|+.... .|.-|++|++
T Consensus 129 ~l~V~~S~~-~~rLFVgNLP 147 (578)
T TIGR01648 129 LLGVCISVD-NCRLFVGGIP 147 (578)
T ss_pred ccccccccc-CceeEeecCC
Confidence 988877643 4667777643
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.9e-10 Score=121.92 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=74.5
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
--|||+-|...|+.|+| +|.|.+||+|.+.+|.||..+ ...+|++||.|-+++||++||+.|||.+|.+|.|
T Consensus 63 fhvfvgdls~eI~~e~l---r~aF~pFGevS~akvirD~~T-----~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKL---REAFAPFGEVSDAKVIRDMNT-----GKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred eeEEehhcchhcchHHH---HHHhccccccccceEeecccC-----CcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 35999999999999887 799999999999999998754 3568899999999999999999999999999999
Q ss_pred EEeEccCCC
Q 002482 112 RACFGTTKY 120 (917)
Q Consensus 112 RASfGTTKY 120 (917)
|-.|+|.|-
T Consensus 135 RTNWATRKp 143 (321)
T KOG0148|consen 135 RTNWATRKP 143 (321)
T ss_pred eccccccCc
Confidence 999999986
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=6.2e-10 Score=117.74 Aligned_cols=80 Identities=29% Similarity=0.464 Sum_probs=71.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
.++||-||.++. +|.+| .++||+||.|..|+|.||..+. .=+|++|||+.+.+||..||..|||..+.+|+|
T Consensus 279 ~ciFvYNLspd~-de~~L--WQlFgpFGAv~nVKvirD~ttn-----kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 279 WCIFVYNLSPDA-DESIL--WQLFGPFGAVTNVKVIRDFTTN-----KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred eEEEEEecCCCc-hHhHH--HHHhCcccceeeEEEEecCCcc-----cccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 579999999995 66676 7999999999999999987643 236789999999999999999999999999999
Q ss_pred EEeEccCC
Q 002482 112 RACFGTTK 119 (917)
Q Consensus 112 RASfGTTK 119 (917)
.|+|-|.|
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99999887
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=5.5e-11 Score=120.56 Aligned_cols=76 Identities=24% Similarity=0.531 Sum_probs=70.3
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
--|||||||+.+++.||| -.|+|||+|++|.+.|+..++ .+.||||..|+++.....|+..+||..|.||+|
T Consensus 36 A~Iyiggl~~~LtEgDil---~VFSqyGe~vdinLiRDk~TG-----KSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDIL---CVFSQYGEIVDINLIRDKKTG-----KSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred eEEEECCCcccccCCcEE---EEeeccCceEEEEEEecCCCC-----cccceEEEEecCccceEEEEeccCCceecceeE
Confidence 359999999999999997 799999999999999998653 578999999999999999999999999999999
Q ss_pred EEeE
Q 002482 112 RACF 115 (917)
Q Consensus 112 RASf 115 (917)
||..
T Consensus 108 rVDH 111 (219)
T KOG0126|consen 108 RVDH 111 (219)
T ss_pred Eeee
Confidence 9984
No 39
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=8.3e-10 Score=93.74 Aligned_cols=60 Identities=32% Similarity=0.516 Sum_probs=48.4
Q ss_pred HHhhc----cCcceEEEE-EeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEe
Q 002482 52 KEYFG----QYGKVLKVS-ISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 114 (917)
Q Consensus 52 ~EyFG----QYGKIiKIv-Inrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRAS 114 (917)
+++|. +||+|.+|. |..++... .+.++|+|||+|.+.+||.+||..|||..++||.|+|+
T Consensus 6 ~~~~~~~~~~fG~v~~v~~v~~~~~~~---~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 6 EREFSEEEEYFGEVGKINKIYIDNVGY---ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHHhcCCeeEEEEEEeCCCCC---CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 57777 999999985 44333210 12467899999999999999999999999999999974
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.01 E-value=9.3e-10 Score=115.43 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=66.8
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
-.+|||+||++.+++++| +|+|++||+|.+|.|.++.. .+++|||+|.++++|..|| .|+|..|.|+.
T Consensus 5 g~TV~V~NLS~~tTE~dL---refFS~~G~I~~V~I~~D~e--------t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDV---YDFFSHCGAIEHVEIIRSGE--------YACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHH---HHHHHhcCCeEEEEEecCCC--------cceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 357999999999999998 89999999999999998743 3469999999999999999 69999999999
Q ss_pred EEEeEcc
Q 002482 111 LRACFGT 117 (917)
Q Consensus 111 LRASfGT 117 (917)
|.+.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 9987544
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.00 E-value=9.8e-10 Score=126.84 Aligned_cols=78 Identities=17% Similarity=0.429 Sum_probs=68.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccC--cceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQY--GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQY--GKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
.+|||+||++.+++|+| +++|++| |+|.+|.+.+ ++|||+|.+.|+|.+||+.|||..|+|+
T Consensus 234 k~LfVgNL~~~~tee~L---~~~F~~f~~G~I~rV~~~r-------------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr 297 (578)
T TIGR01648 234 KILYVRNLMTTTTEEII---EKSFSEFKPGKVERVKKIR-------------DYAFVHFEDREDAVKAMDELNGKELEGS 297 (578)
T ss_pred cEEEEeCCCCCCCHHHH---HHHHHhcCCCceEEEEeec-------------CeEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 57999999999998887 7999999 9999997652 4899999999999999999999999999
Q ss_pred eEEEeEccCCCccccc
Q 002482 110 PLRACFGTTKYCHAWI 125 (917)
Q Consensus 110 ~LRASfGTTKYCssFL 125 (917)
.|+|+|++.+--..|+
T Consensus 298 ~I~V~~Akp~~~~~~~ 313 (578)
T TIGR01648 298 EIEVTLAKPVDKKSYV 313 (578)
T ss_pred EEEEEEccCCCccccc
Confidence 9999999776444333
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.3e-09 Score=111.00 Aligned_cols=84 Identities=19% Similarity=0.378 Sum_probs=72.2
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..|||+|||..|.+.|| .++|-|||+|..|.+...+ .+-++|||.|++..||+.||..-||..+||..|
T Consensus 7 ~~iyvGNLP~diRekei---eDlFyKyg~i~~ieLK~r~--------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEI---EDLFYKYGRIREIELKNRP--------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred ceEEecCCCcchhhccH---HHHHhhhcceEEEEeccCC--------CCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 46899999999999998 8999999999999986433 235699999999999999999999999999999
Q ss_pred EEeEccCCCcccccc
Q 002482 112 RACFGTTKYCHAWIR 126 (917)
Q Consensus 112 RASfGTTKYCssFLR 126 (917)
||.|...-.-+..-+
T Consensus 76 RVEfprggr~s~~~~ 90 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRR 90 (241)
T ss_pred EEEeccCCCcccccc
Confidence 999987654444333
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.94 E-value=2.5e-09 Score=119.92 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=69.5
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcc--eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK--VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGK--IiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
...+|||.|||+.+++|+| +++|++||. |.+|+|..... .++++|||.|.+.++|.+||..|||+.|+
T Consensus 393 ps~~L~v~NLp~~~tee~L---~~lF~~~G~~~i~~ik~~~~~~-------~~~~~gfVeF~~~e~A~~Al~~ln~~~l~ 462 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDL---KELFAENGVHKVKKFKFFPKDN-------ERSKMGLLEWESVEDAVEALIALNHHQLN 462 (481)
T ss_pred CCcEEEEecCCCCCCHHHH---HHHHHhcCCccceEEEEecCCC-------CcceeEEEEcCCHHHHHHHHHHhcCCccC
Confidence 3467999999999999887 799999998 88898864332 13678999999999999999999999999
Q ss_pred Cee------EEEeEccCC
Q 002482 108 GRP------LRACFGTTK 119 (917)
Q Consensus 108 GR~------LRASfGTTK 119 (917)
|+. ||++|++++
T Consensus 463 ~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 463 EPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCccceEEEEeccCC
Confidence 995 999999875
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.7e-09 Score=118.81 Aligned_cols=105 Identities=20% Similarity=0.482 Sum_probs=88.2
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc-C
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL-D 107 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~L-D 107 (917)
-+-.-|||++||.++.++|| .-+|++-|+|-++.++.++... ..+|+|||||.++|+|++||+.||+.+| -
T Consensus 81 ~~G~EVfvGkIPrD~~EdeL---vplfEkiG~I~elRLMmD~~sG-----~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDEL---VPLFEKIGKIYELRLMMDPFSG-----DNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCceEEecCCCccccchhh---HHHHHhccceeeEEEeecccCC-----CCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 45677999999999999998 5999999999999999885432 4689999999999999999999999988 6
Q ss_pred CeeEEEeEccCCCccccccCCCCCCCCccccccCCCCCCCCcHHHHHHhhh
Q 002482 108 GRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 158 (917)
Q Consensus 108 GR~LRASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~t 158 (917)
||.|+||...++ |.-||.|++= .-+||||.....
T Consensus 153 GK~igvc~Svan-~RLFiG~IPK----------------~k~keeIlee~~ 186 (506)
T KOG0117|consen 153 GKLLGVCVSVAN-CRLFIGNIPK----------------TKKKEEILEEMK 186 (506)
T ss_pred CCEeEEEEeeec-ceeEeccCCc----------------cccHHHHHHHHH
Confidence 999999976665 7789888763 357788765433
No 45
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.87 E-value=3.8e-09 Score=118.57 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=73.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..|||||||+.+++|+| .++|+++|.|..+++..|+.++ .++|+||++|.+.|+|.+||+.|||..+.||.|
T Consensus 19 ~~v~vgnip~~~se~~l---~~~~~~~g~v~s~~~v~D~~tG-----~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQL---LSIFSGVGPVLSFRLVYDRETG-----KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHH---HHHHhccCccceeeecccccCC-----CcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 78999999999999998 6999999999999999887654 578999999999999999999999999999999
Q ss_pred EEeEccCC
Q 002482 112 RACFGTTK 119 (917)
Q Consensus 112 RASfGTTK 119 (917)
||.|+...
T Consensus 91 ~v~~~~~~ 98 (435)
T KOG0108|consen 91 RVNYASNR 98 (435)
T ss_pred Eeeccccc
Confidence 99997553
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.84 E-value=3e-09 Score=108.06 Aligned_cols=81 Identities=26% Similarity=0.371 Sum_probs=72.6
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
-|..+|||+||+..++++ +| +|+|.|-|+|+.|.|++++.+. ...|+|||.|.++|||.-||+-||...|.|
T Consensus 7 nqd~tiyvgnld~kvs~~-~l--~EL~iqagpVv~i~iPkDrv~~-----~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEE-LL--YELFIQAGPVVNLHIPKDRVTQ-----KHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCCceEEEecCCHHHHHH-HH--HHHHHhcCceeeeecchhhhcc-----cccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 467899999999999765 45 8999999999999999987642 357899999999999999999999999999
Q ss_pred eeEEEeEcc
Q 002482 109 RPLRACFGT 117 (917)
Q Consensus 109 R~LRASfGT 117 (917)
|+|||.-++
T Consensus 79 rpIrv~kas 87 (203)
T KOG0131|consen 79 RPIRVNKAS 87 (203)
T ss_pred ceeEEEecc
Confidence 999999876
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1.1e-08 Score=109.91 Aligned_cols=86 Identities=16% Similarity=0.415 Sum_probs=74.6
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
.+|||+-|++.+++.+| +++|.+||+|++|.|+++..+. .++|+|||.|+++.|...|-+..+|..||||.|
T Consensus 102 ~TLFv~RLnydT~EskL---rreF~~YG~IkrirlV~d~vTg-----kskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKL---RREFEKYGPIKRIRLVRDKVTG-----KSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccccccHHHH---HHHHHhcCcceeEEEeeecccC-----CccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 57999999999988776 7999999999999999987543 578999999999999999999999999999999
Q ss_pred EEeEccCCCccccc
Q 002482 112 RACFGTTKYCHAWI 125 (917)
Q Consensus 112 RASfGTTKYCssFL 125 (917)
-|.|-.-.-...||
T Consensus 174 ~VDvERgRTvkgW~ 187 (335)
T KOG0113|consen 174 LVDVERGRTVKGWL 187 (335)
T ss_pred EEEecccccccccc
Confidence 99986444344555
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.5e-09 Score=117.62 Aligned_cols=85 Identities=20% Similarity=0.498 Sum_probs=74.9
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc-
Q 002482 27 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI- 105 (917)
Q Consensus 27 RVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~- 105 (917)
|++-+..|||+-|+...+|+|+ +|+|.+||.|.+|.|.|+..+. .+|+|||+|..+|.|..||++|||..
T Consensus 120 r~~~e~KLFvg~lsK~~te~ev---r~iFs~fG~Ied~~ilrd~~~~------sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEV---REIFSRFGHIEDCYILRDPDGL------SRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred ccccchhhhhhhccccccHHHH---HHHHHhhCccchhhheeccccc------ccceeEEEEehHHHHHHHHHhhcccee
Confidence 3566788999999999999999 8999999999999999987653 68999999999999999999999975
Q ss_pred cCC--eeEEEeEccCCC
Q 002482 106 LDG--RPLRACFGTTKY 120 (917)
Q Consensus 106 LDG--R~LRASfGTTKY 120 (917)
++| .+|-|-|+-||.
T Consensus 191 meGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQK 207 (510)
T ss_pred eccCCCceEEEecccCC
Confidence 666 458899988873
No 49
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.4e-08 Score=118.65 Aligned_cols=103 Identities=16% Similarity=0.371 Sum_probs=85.8
Q ss_pred ccCCCCcc----ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 002482 20 RMHLTNVR----VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAI 95 (917)
Q Consensus 20 Rk~LanVR----VIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~ 95 (917)
+|-|..|+ .|...+|||+||+.+++++|| ..+|+.||+|..|.++. ++++|||++.+..||.
T Consensus 406 ~kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL---~~~feefGeiqSi~li~-----------~R~cAfI~M~~RqdA~ 471 (894)
T KOG0132|consen 406 KKGLPTIPPDHISVCSRTLWVGGIPKNVTEQDL---ANLFEEFGEIQSIILIP-----------PRGCAFIKMVRRQDAE 471 (894)
T ss_pred cccCCCCCCcceeEeeeeeeeccccchhhHHHH---HHHHHhcccceeEeecc-----------CCceeEEEEeehhHHH
Confidence 35677787 678889999999999999998 79999999999999973 4678999999999999
Q ss_pred HHHHHhCCCccCCeeEEEeEccCCCccccccCCCCCCCCccccccCCCC
Q 002482 96 RCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQ 144 (917)
Q Consensus 96 rAIqaLNG~~LDGR~LRASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~ 144 (917)
+|+++|....+.++.||+.||..|--.. .-.|.|-||+|=-
T Consensus 472 kalqkl~n~kv~~k~Iki~Wa~g~G~ks--------e~k~~wD~~lGVt 512 (894)
T KOG0132|consen 472 KALQKLSNVKVADKTIKIAWAVGKGPKS--------EYKDYWDVELGVT 512 (894)
T ss_pred HHHHHHhcccccceeeEEeeeccCCcch--------hhhhhhhcccCee
Confidence 9999999999999999999997663332 1235666666643
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.6e-08 Score=114.84 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=72.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
+-.|.|.||||.+.+++| .-.|++||+|..|+|++...++ -.|||||+|....+|..||..+||..++||.
T Consensus 117 k~rLIIRNLPf~~k~~dL---k~vFs~~G~V~Ei~IP~k~dgk------lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDL---KNVFSNFGKVVEIVIPRKKDGK------LCGFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred cceEEeecCCcccCcHHH---HHHHhhcceEEEEEcccCCCCC------ccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 677899999999999987 6899999999999999877654 3589999999999999999999999999999
Q ss_pred EEEeEccCC
Q 002482 111 LRACFGTTK 119 (917)
Q Consensus 111 LRASfGTTK 119 (917)
|-|.|+..|
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999664
No 51
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.7e-08 Score=99.11 Aligned_cols=86 Identities=14% Similarity=0.306 Sum_probs=75.6
Q ss_pred CccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 002482 25 NVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 104 (917)
Q Consensus 25 nVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~ 104 (917)
.-|-|.-..|||.|+-+..++|+| ++.|+.||+|+.|.++.++.+. --.|+|.|.|++.++|..||.++||.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi---~d~F~dyGeiKNihLNLDRRtG-----y~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDI---HDKFADYGEIKNIHLNLDRRTG-----YVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHH---HHHHhhcccccceeeccccccc-----cccceeeeehHhHHHHHHHHHhccch
Confidence 344566678999999999999999 8999999999999999876543 35789999999999999999999999
Q ss_pred ccCCeeEEEeEccC
Q 002482 105 ILDGRPLRACFGTT 118 (917)
Q Consensus 105 ~LDGR~LRASfGTT 118 (917)
.|-|..|.|.|+..
T Consensus 138 ~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 138 ELLGQNVSVDWCFV 151 (170)
T ss_pred hhhCCceeEEEEEe
Confidence 99999999998643
No 52
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.69 E-value=4.3e-08 Score=108.57 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=63.0
Q ss_pred cCeEEEeCCCCC--CC--------hhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 002482 31 RNLVYIIGLPIN--LA--------DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 100 (917)
Q Consensus 31 KNLVYV~GLP~s--IA--------eEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqa 100 (917)
...|+|.||... +. .|+| ++.|++||+|++|+|.+...... .....|+|||+|.+.++|.+||.+
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl---~~~f~~~G~v~~v~i~~~~~~~~--~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDV---KTEFSKYGPLINIVIPRPNGDRN--STPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHH---HHHHHhcCCeeEEEeeccCcCCC--cCCCcceEEEEECCHHHHHHHHHH
Confidence 456788888532 11 1234 68999999999999987532110 112357899999999999999999
Q ss_pred hCCCccCCeeEEEeEccC
Q 002482 101 VHSYILDGRPLRACFGTT 118 (917)
Q Consensus 101 LNG~~LDGR~LRASfGTT 118 (917)
|||..++||.|.|.|-..
T Consensus 484 lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCEECCeEEEEEEeCH
Confidence 999999999999998543
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.6e-08 Score=112.09 Aligned_cols=115 Identities=23% Similarity=0.447 Sum_probs=90.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-----CC-Cc
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV-----HS-YI 105 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaL-----NG-~~ 105 (917)
-+|||.|||+.+++|+| ++.|.+||+|.-+.|..++.+. ++.|.|||-|.++++|..||.+. .| ..
T Consensus 293 ~tVFvRNL~fD~tEEel---~~~fskFG~v~ya~iV~~k~T~-----~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEEL---KEHFSKFGEVKYAIIVKDKDTG-----HSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred ceEEEecCCccccHHHH---HHHHHhhccceeEEEEeccCCC-----CcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 48999999999999987 7999999999999888877653 57889999999999999999998 45 67
Q ss_pred cCCeeEEEeEccCCCccccc-----cCCCCCCCCccccccCCCC------CCCCcHHHHHH
Q 002482 106 LDGRPLRACFGTTKYCHAWI-----RNMPCSVPDCLYLHDFGSQ------EDSFTKDEIVS 155 (917)
Q Consensus 106 LDGR~LRASfGTTKYCssFL-----Rn~~C~NpdCmYLHE~g~~------~DsFTKeEm~~ 155 (917)
|+||.|+|..+.|+--..=| +-.+.. +--+||--.|-- .+.++.+||..
T Consensus 365 l~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~g-krNLyLa~EG~I~~gt~aAeglS~~Dm~k 424 (678)
T KOG0127|consen 365 LDGRLLKVTLAVTRKEAADMEQKKKRKKPKG-KRNLYLAREGLIRDGTPAAEGLSATDMAK 424 (678)
T ss_pred EeccEEeeeeccchHHHHHHHHHhhhhccCC-ccceeeeccCccccCChhhcccchhhHHH
Confidence 99999999999887666533 111111 236777665542 44688888874
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=3.4e-08 Score=110.28 Aligned_cols=71 Identities=24% Similarity=0.567 Sum_probs=64.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..|||.||+..+++|-| ++.|.+||+|.+|+..+| +|||-|.+.++|.+|++.+||+.|+|..|
T Consensus 260 KvLYVRNL~~~tTeE~l---k~~F~~~G~veRVkk~rD-------------YaFVHf~eR~davkAm~~~ngkeldG~~i 323 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETL---KKLFNEFGKVERVKKPRD-------------YAFVHFAEREDAVKAMKETNGKELDGSPI 323 (506)
T ss_pred eeeeeeccchhhhHHHH---HHHHHhccceEEeecccc-------------eeEEeecchHHHHHHHHHhcCceecCceE
Confidence 34899999999987765 789999999999998754 69999999999999999999999999999
Q ss_pred EEeEccC
Q 002482 112 RACFGTT 118 (917)
Q Consensus 112 RASfGTT 118 (917)
.|.+++.
T Consensus 324 EvtLAKP 330 (506)
T KOG0117|consen 324 EVTLAKP 330 (506)
T ss_pred EEEecCC
Confidence 9999865
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.7e-07 Score=99.66 Aligned_cols=111 Identities=18% Similarity=0.412 Sum_probs=86.4
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
-|+.+.|-=||..+++||+ +.+|+-.|+|..+++.||+.+. ..-|++||.|.+++||++||..+||-.|..+
T Consensus 40 skTNLIvNYLPQ~MTqdE~---rSLF~SiGeiEScKLvRDKitG-----qSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDEL---RSLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred ccceeeeeecccccCHHHH---HHHhhcccceeeeeeeeccccc-----cccccceeeecChHHHHHHHhhhcceeeccc
Confidence 3556778889999999998 7999999999999999998653 3567899999999999999999999999999
Q ss_pred eEEEeEccCCCccccccCCCCCCCCccccccCCCCCCCCcHHHHHHhhhh
Q 002482 110 PLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 159 (917)
Q Consensus 110 ~LRASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~tr 159 (917)
+|||+|+...... +|+ .-+|+--+. -+.|..||++.+.+
T Consensus 112 TIKVSyARPSs~~--Ik~------aNLYvSGlP---ktMtqkelE~iFs~ 150 (360)
T KOG0145|consen 112 TIKVSYARPSSDS--IKD------ANLYVSGLP---KTMTQKELEQIFSP 150 (360)
T ss_pred eEEEEeccCChhh--hcc------cceEEecCC---ccchHHHHHHHHHH
Confidence 9999999765332 222 223333222 25666777765544
No 56
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.52 E-value=1.3e-07 Score=107.76 Aligned_cols=78 Identities=27% Similarity=0.507 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.+||.||...+.-.|| +.+|++||||+-.+|..+... |..+|++|||+.+.+||.+||..|+-+.|.||+|.
T Consensus 407 NlWVSGLSstTRAtDL---KnlFSKyGKVvGAKVVTNaRs-----PGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNARS-----PGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ceeeeccccchhhhHH---HHHHHHhcceeceeeeecCCC-----CCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 4799999998877787 799999999998887765532 34689999999999999999999999999999999
Q ss_pred EeEccC
Q 002482 113 ACFGTT 118 (917)
Q Consensus 113 ASfGTT 118 (917)
|.-++.
T Consensus 479 VEkaKN 484 (940)
T KOG4661|consen 479 VEKAKN 484 (940)
T ss_pred eeeccc
Confidence 886543
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.52 E-value=1e-07 Score=108.41 Aligned_cols=78 Identities=21% Similarity=0.487 Sum_probs=70.0
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 113 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRA 113 (917)
|||++|-++++++.+ +..|..||+|..|.+.++..++ ..+||+||||.+.|+|.+|...|||++|.||.|||
T Consensus 281 l~vgnLHfNite~~l---r~ifepfg~Ie~v~l~~d~~tG-----~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 281 LYVGNLHFNITEDML---RGIFEPFGKIENVQLTKDSETG-----RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhcccccCchHHHH---hhhccCcccceeeeeccccccc-----cccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 899999999988776 6899999999999998876332 35789999999999999999999999999999999
Q ss_pred eEccCC
Q 002482 114 CFGTTK 119 (917)
Q Consensus 114 SfGTTK 119 (917)
+..|-+
T Consensus 353 ~~v~~r 358 (549)
T KOG0147|consen 353 SVVTER 358 (549)
T ss_pred EEeeee
Confidence 988765
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=2.4e-07 Score=103.39 Aligned_cols=78 Identities=21% Similarity=0.551 Sum_probs=67.5
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC-ccCC--e
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY-ILDG--R 109 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~-~LDG--R 109 (917)
.+||+-||..++|+|| +++|.+||.|..|.|.+|+.+. ..+|++||+|.+.+||.+||.+|++. .|-| .
T Consensus 36 KlfVgqIprt~sE~dl---r~lFe~yg~V~einl~kDk~t~-----~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDL---RELFEKYGNVYEINLIKDKSTG-----QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred hheeccCCccccHHHH---HHHHHHhCceeEEEeecccccC-----cccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 3799999999999998 6999999999999999998754 35788999999999999999999985 4666 4
Q ss_pred eEEEeEccC
Q 002482 110 PLRACFGTT 118 (917)
Q Consensus 110 ~LRASfGTT 118 (917)
.|+|-|+-.
T Consensus 108 pvqvk~Ad~ 116 (510)
T KOG0144|consen 108 PVQVKYADG 116 (510)
T ss_pred ceeecccch
Confidence 578888744
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.42 E-value=2.1e-07 Score=100.04 Aligned_cols=71 Identities=27% Similarity=0.504 Sum_probs=66.1
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.+||+|||.+.++.+| +.+|.|||||+.+.|.++ ++||-.+++..|..||+.|+|..|+|..|+
T Consensus 4 KLFIGNLp~~~~~~el---r~lFe~ygkVlECDIvKN-------------YgFVHiEdktaaedairNLhgYtLhg~nIn 67 (346)
T KOG0109|consen 4 KLFIGNLPREATEQEL---RSLFEQYGKVLECDIVKN-------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNIN 67 (346)
T ss_pred chhccCCCcccchHHH---HHHHHhhCceEeeeeecc-------------cceEEeecccccHHHHhhcccceecceEEE
Confidence 5899999999998887 789999999999999875 579999999999999999999999999999
Q ss_pred EeEccCC
Q 002482 113 ACFGTTK 119 (917)
Q Consensus 113 ASfGTTK 119 (917)
|.-.+.|
T Consensus 68 VeaSksK 74 (346)
T KOG0109|consen 68 VEASKSK 74 (346)
T ss_pred EEecccc
Confidence 9988777
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=2.7e-07 Score=101.50 Aligned_cols=75 Identities=15% Similarity=0.399 Sum_probs=66.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..||||-|.+++.++ .+ +..|..||.|+.|.|..|..+. ..++||||.|+-+|.|..|++.|||..+.||.|
T Consensus 114 cRvYVGSIsfEl~ED-ti--R~AF~PFGPIKSInMSWDp~T~-----kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELRED-TI--RRAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEechH-HH--HhhccCCCCcceeecccccccc-----cccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 459999999999765 45 6789999999999999887643 467899999999999999999999999999999
Q ss_pred EEe
Q 002482 112 RAC 114 (917)
Q Consensus 112 RAS 114 (917)
||.
T Consensus 186 KVg 188 (544)
T KOG0124|consen 186 KVG 188 (544)
T ss_pred ccc
Confidence 987
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=3.2e-07 Score=97.90 Aligned_cols=82 Identities=16% Similarity=0.395 Sum_probs=73.3
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
...|||.-||.+..+.||+ .+|-.||.|+..+|..|+.+. .++||+||.|+++..|..||++|||++|.-+.
T Consensus 285 GCNlFIYHLPQEFgDaEli---QmF~PFGhivSaKVFvDRATN-----QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELI---QMFLPFGHIVSAKVFVDRATN-----QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred cceEEEEeCchhhccHHHH---HHhccccceeeeeeeehhccc-----cccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 3678999999999999996 899999999998887776653 36899999999999999999999999999999
Q ss_pred EEEeEccCCC
Q 002482 111 LRACFGTTKY 120 (917)
Q Consensus 111 LRASfGTTKY 120 (917)
|||..-..|-
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9999877764
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=9.5e-07 Score=97.68 Aligned_cols=72 Identities=18% Similarity=0.492 Sum_probs=66.2
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 113 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRA 113 (917)
|||-||++.++.++| ++.|+.||+|+.|+|.++..+ .+|+ ||.|+++++|.+||..+||..+.|+.|-|
T Consensus 79 ~~i~nl~~~~~~~~~---~d~f~~~g~ilS~kv~~~~~g-------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSL---YDTFSEFGNILSCKVATDENG-------SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeecCCCcccCcHHH---HHHHHhhcCeeEEEEEEcCCC-------ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 999999999999998 899999999999999988765 4677 99999999999999999999999999987
Q ss_pred eEc
Q 002482 114 CFG 116 (917)
Q Consensus 114 SfG 116 (917)
...
T Consensus 148 g~~ 150 (369)
T KOG0123|consen 148 GLF 150 (369)
T ss_pred eec
Confidence 654
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.36 E-value=5.5e-07 Score=91.94 Aligned_cols=89 Identities=24% Similarity=0.363 Sum_probs=72.5
Q ss_pred cCCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEE-EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 002482 21 MHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV-SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 99 (917)
Q Consensus 21 k~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKI-vInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIq 99 (917)
++-.+++|- -.+||+||.+.+ +|.+| ++.|+.||.|++. .|.++..+ ++++++|||.|++.|.+.+||.
T Consensus 88 ~~~~nl~vg--anlfvgNLd~~v-De~~L--~dtFsafG~l~~~P~i~rd~~t-----g~~~~~g~i~~~sfeasd~ai~ 157 (203)
T KOG0131|consen 88 AHQKNLDVG--ANLFVGNLDPEV-DEKLL--YDTFSAFGVLISPPKIMRDPDT-----GNPKGFGFINYASFEASDAAIG 157 (203)
T ss_pred ccccccccc--ccccccccCcch-hHHHH--HHHHHhccccccCCcccccccC-----CCCCCCeEEechhHHHHHHHHH
Confidence 344555663 568999999987 55666 8999999999973 45555543 2578899999999999999999
Q ss_pred HhCCCccCCeeEEEeEccCC
Q 002482 100 SVHSYILDGRPLRACFGTTK 119 (917)
Q Consensus 100 aLNG~~LDGR~LRASfGTTK 119 (917)
+|||..+..|.|+|+|+..|
T Consensus 158 s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 158 SMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HhccchhcCCceEEEEEEec
Confidence 99999999999999998655
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=9e-07 Score=96.93 Aligned_cols=74 Identities=23% Similarity=0.532 Sum_probs=64.5
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-CCCccCCee
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV-HSYILDGRP 110 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaL-NG~~LDGR~ 110 (917)
.+|||+||-..+++.+| +++|-|||+|..|++... .++|||+|.+.+.|++|.... |-..++|+.
T Consensus 229 ~tLyIg~l~d~v~e~dI---rdhFyqyGeirsi~~~~~-----------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDI---RDHFYQYGEIRSIRILPR-----------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred eEEEecccccchhHHHH---HHHHhhcCCeeeEEeecc-----------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 47999999999999998 799999999999999743 247999999999999998754 445689999
Q ss_pred EEEeEccCC
Q 002482 111 LRACFGTTK 119 (917)
Q Consensus 111 LRASfGTTK 119 (917)
|++-||.++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999984
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.32 E-value=5.3e-07 Score=97.11 Aligned_cols=76 Identities=16% Similarity=0.432 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
..+++|+||.+..+..|| ++.|.+||.|+.+.|.++ ++||-|+..|||..||+.|||++++|+.
T Consensus 78 stkl~vgNis~tctn~El---Ra~fe~ygpviecdivkd-------------y~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQEL---RAKFEKYGPVIECDIVKD-------------YAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred ccccccCCCCccccCHHH---hhhhcccCCceeeeeecc-------------eeEEEEeeccchHHHHhcccccccccce
Confidence 467999999999999998 799999999999999864 6899999999999999999999999999
Q ss_pred EEEeEccCCCcc
Q 002482 111 LRACFGTTKYCH 122 (917)
Q Consensus 111 LRASfGTTKYCs 122 (917)
++|...|.+--.
T Consensus 142 m~vq~stsrlrt 153 (346)
T KOG0109|consen 142 MHVQLSTSRLRT 153 (346)
T ss_pred eeeeeecccccc
Confidence 999999877444
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=1.6e-06 Score=101.23 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=88.9
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
++.+.+||.||++..+.+++ ...|.++|.|+.|.|.+.+.... -.-+.|+|||.|.++|+|..|+++|+|+.|+|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l---~~~F~k~G~VlS~~I~kkkd~~~--k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDL---EDLFSKQGTVLSIEISKKKDPAN--KYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred ccchhhhhhcCCcccchhHH---HHHHHhcCeEEEEEEeccccccc--cccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 44555999999999999998 58999999999999976543321 11356899999999999999999999999999
Q ss_pred eeEEEeEccCCCccccccCCCCCC-CCccccccCCCCCCCCcHHHHHHhhhh
Q 002482 109 RPLRACFGTTKYCHAWIRNMPCSV-PDCLYLHDFGSQEDSFTKDEIVSAFTR 159 (917)
Q Consensus 109 R~LRASfGTTKYCssFLRn~~C~N-pdCmYLHE~g~~~DsFTKeEm~~~~tr 159 (917)
+.|.|.|.-+|--..-- .+|.. +.|.-||--.-+- ..|+.|+...++.
T Consensus 588 H~l~lk~S~~k~~~~~g--K~~~~kk~~tKIlVRNipF-eAt~rEVr~LF~a 636 (725)
T KOG0110|consen 588 HKLELKISENKPASTVG--KKKSKKKKGTKILVRNIPF-EATKREVRKLFTA 636 (725)
T ss_pred ceEEEEeccCccccccc--cccccccccceeeeeccch-HHHHHHHHHHHhc
Confidence 99999987744333322 33433 3466666544321 1356666554443
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.7e-06 Score=95.66 Aligned_cols=81 Identities=22% Similarity=0.451 Sum_probs=68.9
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.+||| +.++++.| +++|.++|+|+.|.|-++. + .-|+|||+|.+++||.+||+.+|...+.|+.||
T Consensus 3 sl~vg---~~v~e~~l---~~~f~~~~~v~s~rvc~d~-t-------slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~r 68 (369)
T KOG0123|consen 3 SLYVG---PDVTEAML---FDKFSPAGPVLSIRVCRDA-T-------SLGYAYVNFQQPADAERALDTMNFDVLKGKPIR 68 (369)
T ss_pred ceecC---CcCChHHH---HHHhcccCCceeEEEeecC-C-------ccceEEEecCCHHHHHHHHHHcCCcccCCcEEE
Confidence 57998 88887776 7999999999999999886 4 357999999999999999999999999999999
Q ss_pred EeEccCCCccccccC
Q 002482 113 ACFGTTKYCHAWIRN 127 (917)
Q Consensus 113 ASfGTTKYCssFLRn 127 (917)
+-|.-..--..|++|
T Consensus 69 im~s~rd~~~~~i~n 83 (369)
T KOG0123|consen 69 IMWSQRDPSLVFIKN 83 (369)
T ss_pred eehhccCCceeeecC
Confidence 998744333356655
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.26 E-value=2.4e-06 Score=93.63 Aligned_cols=63 Identities=29% Similarity=0.501 Sum_probs=55.4
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeE--ccCCCccc
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACF--GTTKYCHA 123 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASf--GTTKYCss 123 (917)
.+-..+||.|.+|+|...+ |.|.|-|+|.+.++|..||+.|+|.+++||.|.|+. |+|+|-..
T Consensus 294 ~eec~K~G~v~~vvv~d~h---------PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~e 358 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRH---------PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTE 358 (382)
T ss_pred HHHHHHhCCcceEEEeccC---------CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeee
Confidence 4779999999999997542 567899999999999999999999999999999987 78887653
No 69
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.25 E-value=2.3e-06 Score=90.51 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=69.1
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..|||.||++.+.++|| .|+|.+||.++++.|..+..+. +-|.|=|+|.+.+||.+||+.++|..+||+.|
T Consensus 84 ~~v~v~NL~~~V~~~Dl---~eLF~~~~~~~r~~vhy~~~G~------s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADL---KELFAEFGELKRVAVHYDRAGR------SLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred ceeeeecCCcCcchHHH---HHHHHHhccceEEeeccCCCCC------CCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 77999999999999999 6999999999999998877653 56789999999999999999999999999999
Q ss_pred EEeEc
Q 002482 112 RACFG 116 (917)
Q Consensus 112 RASfG 116 (917)
++..-
T Consensus 155 k~~~i 159 (243)
T KOG0533|consen 155 KIEII 159 (243)
T ss_pred eeEEe
Confidence 87754
No 70
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=2.1e-06 Score=100.22 Aligned_cols=108 Identities=18% Similarity=0.305 Sum_probs=85.0
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEee--cCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISR--TATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInr--d~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
+.+.|||+||++.+.++.|| ..||.||.|..|+|+. +..-. ...+-++||-|-+..||.+|++.|+|..+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll---~tfGrfgPlasvKimwpRtEeEk----~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLL---RTFGRFGPLASVKIMWPRTEEEK----RRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cccceeeecCCccccHHHHH---HHhcccCcccceeeecccchhhh----ccccccceeeehhhhhHHHHHHHhcceeee
Confidence 66789999999999998886 7899999999999963 22211 134668999999999999999999999999
Q ss_pred CeeEEEeEc-------cCCCccccccCCCCCCCCccccccCCCC
Q 002482 108 GRPLRACFG-------TTKYCHAWIRNMPCSVPDCLYLHDFGSQ 144 (917)
Q Consensus 108 GR~LRASfG-------TTKYCssFLRn~~C~NpdCmYLHE~g~~ 144 (917)
++.+|.-|| +++|----+-...-+.+.|..-|+-...
T Consensus 246 ~~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~ 289 (877)
T KOG0151|consen 246 EYEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPG 289 (877)
T ss_pred eeeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCC
Confidence 999999999 4455554444555566777777765443
No 71
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.19 E-value=3.8e-06 Score=87.06 Aligned_cols=78 Identities=22% Similarity=0.462 Sum_probs=68.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccC-cceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQY-GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQY-GKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
...|||.-+|.-+-+.++| .||+|| |.|..+++.|++.+ ++++|+|||.|+++|.|.-|-+.||++.|.|+
T Consensus 49 ~g~~~~~~~p~g~~e~~~~---~~~~q~~g~v~r~rlsRnkrT-----GNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEIL---NYFRQFGGTVTRFRLSRNKRT-----GNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccceeecccccchhHHHHh---hhhhhcCCeeEEEEeeccccc-----CCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 4779999999999888885 899999 77777777787654 36889999999999999999999999999999
Q ss_pred eEEEeEc
Q 002482 110 PLRACFG 116 (917)
Q Consensus 110 ~LRASfG 116 (917)
.|.|.|=
T Consensus 121 lL~c~vm 127 (214)
T KOG4208|consen 121 LLECHVM 127 (214)
T ss_pred eeeeEEe
Confidence 9999884
No 72
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2e-06 Score=94.66 Aligned_cols=93 Identities=18% Similarity=0.350 Sum_probs=80.2
Q ss_pred ccCccCCCCcccc-ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 002482 17 SEGRMHLTNVRVI-QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAI 95 (917)
Q Consensus 17 ~e~Rk~LanVRVI-QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~ 95 (917)
-|.--.|...-|. ..|.|||.-|.+-+++||| .-+|+.||+|+.+.|.++..++ ..-.+|||.|+++|+.+
T Consensus 224 LEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDL---eiIFSrFG~i~sceVIRD~ktg-----dsLqyaFiEFen~escE 295 (479)
T KOG0415|consen 224 LEMVGDLPDADVKPPENVLFVCKLNPVTTDEDL---EIIFSRFGKIVSCEVIRDRKTG-----DSLQYAFIEFENKESCE 295 (479)
T ss_pred HHHhcCCcccccCCCcceEEEEecCCcccccch---hhHHhhcccceeeeEEeccccc-----chhheeeeeecchhhHH
Confidence 3555566666544 6799999999999999998 6889999999999999987654 34568999999999999
Q ss_pred HHHHHhCCCccCCeeEEEeEcc
Q 002482 96 RCIQSVHSYILDGRPLRACFGT 117 (917)
Q Consensus 96 rAIqaLNG~~LDGR~LRASfGT 117 (917)
+|.-.|++..||.|.|.|.|..
T Consensus 296 ~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 296 QAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred HHHhhhcceeeccceEEeehhh
Confidence 9999999999999999999963
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.15 E-value=1.3e-06 Score=94.94 Aligned_cols=75 Identities=23% Similarity=0.479 Sum_probs=62.6
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
....+||+||+|.+++|.| ++||++||+|.+++|+++..+ .+.++++||+|++++...+++.. .-..||||
T Consensus 5 ~~~KlfiGgisw~ttee~L---r~yf~~~Gev~d~~vm~d~~t-----~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESL---REYFSQFGEVTDCVVMRDPST-----GRSRGFGFVTFATPEGVDAVLNA-RTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHH---HHHhcccCceeeEEEeccCCC-----CCcccccceecCCCcchheeecc-cccccCCc
Confidence 4567999999999998887 799999999999999998764 35789999999998887777665 34578888
Q ss_pred eEEE
Q 002482 110 PLRA 113 (917)
Q Consensus 110 ~LRA 113 (917)
.|-+
T Consensus 76 ~ve~ 79 (311)
T KOG4205|consen 76 SVEP 79 (311)
T ss_pred cccc
Confidence 8743
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.09 E-value=8.9e-06 Score=89.35 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=75.7
Q ss_pred CCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceE--------EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 002482 24 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--------KVSISRTATGDIQHSANNSCCVYITYSREDDAI 95 (917)
Q Consensus 24 anVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIi--------KIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~ 95 (917)
.++--.++..|||.|||..+|.+|++ ++|+++|-|. +|++.++..|. ..|-|-|+|.+.|...
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~---~~~sKcGiI~~d~~t~epk~KlYrd~~G~------lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFA---EVMSKCGIIMRDPQTGEPKVKLYRDNQGK------LKGDALCCYIKRESVE 197 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHH---HHHHhcceEeccCCCCCeeEEEEecCCCC------ccCceEEEeecccHHH
Confidence 33445556779999999999999994 9999999998 68888877653 5678999999999999
Q ss_pred HHHHHhCCCccCCeeEEEeEccCCCcc
Q 002482 96 RCIQSVHSYILDGRPLRACFGTTKYCH 122 (917)
Q Consensus 96 rAIqaLNG~~LDGR~LRASfGTTKYCs 122 (917)
.||+.||+..+.|+.|||.-|...+-.
T Consensus 198 LA~~ilDe~~~rg~~~rVerAkfq~Kg 224 (382)
T KOG1548|consen 198 LAIKILDEDELRGKKLRVERAKFQMKG 224 (382)
T ss_pred HHHHHhCcccccCcEEEEehhhhhhcc
Confidence 999999999999999999987554433
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=1.2e-05 Score=88.90 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=70.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
|.|||.-+-+++.++|| +..|.-||+|+++.+.+...+. ..+|++||.|.+...-..||..||=+.|.|..|
T Consensus 211 nRiYVaSvHpDLSe~Di---KSVFEAFG~I~~C~LAr~pt~~-----~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDI---KSVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred heEEeeecCCCccHHHH---HHHHHhhcceeeEEeeccCCCC-----CccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 78999999999999998 6899999999999999877653 467899999999999999999999999999999
Q ss_pred EEeEccC
Q 002482 112 RACFGTT 118 (917)
Q Consensus 112 RASfGTT 118 (917)
||--..|
T Consensus 283 RVGk~vT 289 (544)
T KOG0124|consen 283 RVGKCVT 289 (544)
T ss_pred ecccccC
Confidence 9874433
No 76
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=6.3e-06 Score=94.46 Aligned_cols=88 Identities=17% Similarity=0.375 Sum_probs=74.7
Q ss_pred CccCCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 002482 19 GRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 98 (917)
Q Consensus 19 ~Rk~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAI 98 (917)
-|+++......-...|+|.+||..+++++| ++.||.||+|..|..-. ..++-+||.|.+..+|++|+
T Consensus 63 ~~~~np~~~~~~~~~L~v~nl~~~Vsn~~L---~~~f~~yGeir~ir~t~----------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 63 LRPDNPSEKDMNQGTLVVFNLPRSVSNDTL---LRIFGAYGEIREIRETP----------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred CCcCCCCcccCccceEEEEecCCcCCHHHH---HHHHHhhcchhhhhccc----------ccCceEEEEEeehHhHHHHH
Confidence 455777777777778899999999999998 48999999999976533 24568999999999999999
Q ss_pred HHhCCCccCCeeEEEeEccCC
Q 002482 99 QSVHSYILDGRPLRACFGTTK 119 (917)
Q Consensus 99 qaLNG~~LDGR~LRASfGTTK 119 (917)
++|++..+.|+.|++..|++.
T Consensus 130 k~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 130 KALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred HHHHHHHhhhhhhcCCCcccc
Confidence 999999999999997766654
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.92 E-value=1.2e-05 Score=87.68 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=69.3
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
..|||+|||..++++++ ++||.|||+|..++++.|.... .+++|+||+|.+++...++.. ..-..|.|+.+
T Consensus 98 kkiFvGG~~~~~~e~~~---r~yfe~~g~v~~~~~~~d~~~~-----~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~v 168 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDF---KDYFEQFGKVADVVIMYDKTTS-----RPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKV 168 (311)
T ss_pred eEEEecCcCCCCchHHH---hhhhhccceeEeeEEeeccccc-----ccccceeeEeccccccceecc-cceeeecCcee
Confidence 47999999999998887 7999999999999999887643 478899999999776666554 57788999999
Q ss_pred EEeEccCCCcccc
Q 002482 112 RACFGTTKYCHAW 124 (917)
Q Consensus 112 RASfGTTKYCssF 124 (917)
.|.-+..|--...
T Consensus 169 evkrA~pk~~~~~ 181 (311)
T KOG4205|consen 169 EVKRAIPKEVMQS 181 (311)
T ss_pred eEeeccchhhccc
Confidence 9988877655543
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=1.9e-05 Score=82.55 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.|||+.||+...+++| .++|..||+|..|.|. .+++||.|.+..||..||..+||.+|.|-.+.
T Consensus 3 rv~vg~~~~~~~~~d~---E~~f~~yg~~~d~~mk-------------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDV---ERFFKGYGKIPDADMK-------------NGFGFVEFEDPRDADDAVHDLDGKELCGERLV 66 (216)
T ss_pred ceeecccCCccchhHH---HHHHhhccccccceee-------------cccceeccCchhhhhcccchhcCceecceeee
Confidence 4899999999999998 7999999999999884 24679999999999999999999999998899
Q ss_pred EeEccCC
Q 002482 113 ACFGTTK 119 (917)
Q Consensus 113 ASfGTTK 119 (917)
+.|++.+
T Consensus 67 ve~~r~~ 73 (216)
T KOG0106|consen 67 VEHARGK 73 (216)
T ss_pred eeccccc
Confidence 9988753
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.75 E-value=2e-05 Score=92.44 Aligned_cols=80 Identities=14% Similarity=0.324 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
-+.|.|.|||+..+..++ +++|+.||.|..|.|++.. +.. -.+|||||+|-++.||.+|+.+|.++.|.||.
T Consensus 613 ~tKIlVRNipFeAt~rEV---r~LF~aFGqlksvRlPKK~-~k~----a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREV---RKLFTAFGQLKSVRLPKKI-GKG----AHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccchHHHHHHH---HHHHhcccceeeeccchhh-cch----hhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 367999999999999998 8999999999999998762 211 24789999999999999999999999999999
Q ss_pred EEEeEccC
Q 002482 111 LRACFGTT 118 (917)
Q Consensus 111 LRASfGTT 118 (917)
|-..|+..
T Consensus 685 LVLEwA~~ 692 (725)
T KOG0110|consen 685 LVLEWAKS 692 (725)
T ss_pred hheehhcc
Confidence 99887643
No 80
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.73 E-value=4.5e-05 Score=87.56 Aligned_cols=76 Identities=21% Similarity=0.378 Sum_probs=64.0
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEc-cCCCccccccCCCC
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG-TTKYCHAWIRNMPC 130 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfG-TTKYCssFLRn~~C 130 (917)
.|-.++||+|..|.|.++ .-|++||.|.+.++|..|+.+|||.+++||.|.|.|= ++.|-.-|.+-
T Consensus 471 ~Eec~k~g~v~hi~vd~n----------s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~--- 537 (549)
T KOG0147|consen 471 IEECGKHGKVCHIFVDKN----------SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDS--- 537 (549)
T ss_pred HHHHHhcCCeeEEEEccC----------CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCc---
Confidence 477899999999999754 2378999999999999999999999999999999996 45777777643
Q ss_pred CCCCccccccC
Q 002482 131 SVPDCLYLHDF 141 (917)
Q Consensus 131 ~NpdCmYLHE~ 141 (917)
.-.|+|+|..
T Consensus 538 -~~~~~~~~~~ 547 (549)
T KOG0147|consen 538 -KAAPLLFHTN 547 (549)
T ss_pred -ccceeeeecc
Confidence 3478888864
No 81
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.68 E-value=1.8e-05 Score=84.11 Aligned_cols=78 Identities=22% Similarity=0.500 Sum_probs=67.0
Q ss_pred cCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEc-----cCCCccccccCCCCC
Q 002482 57 QYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG-----TTKYCHAWIRNMPCS 131 (917)
Q Consensus 57 QYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfG-----TTKYCssFLRn~~C~ 131 (917)
+||+|.+++|-.+-. .+-.|-+||.|..+|+|++|++.|||.++.|++|.|.|. ...-|..|-++ .|.
T Consensus 92 kygEiee~~Vc~Nl~------~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~-~C~ 164 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLG------DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT-ECS 164 (260)
T ss_pred Hhhhhhhhhhhcccc------hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc-cCC
Confidence 999999998854432 123578999999999999999999999999999999997 34679999999 888
Q ss_pred C-CCccccccC
Q 002482 132 V-PDCLYLHDF 141 (917)
Q Consensus 132 N-pdCmYLHE~ 141 (917)
. ..|.|+|-.
T Consensus 165 rG~~CnFmH~k 175 (260)
T KOG2202|consen 165 RGGACNFMHVK 175 (260)
T ss_pred CCCcCcchhhh
Confidence 8 599999987
No 82
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.66 E-value=4.7e-05 Score=83.94 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=85.8
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceE--------EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 002482 27 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--------KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 98 (917)
Q Consensus 27 RVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIi--------KIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAI 98 (917)
.+.++.+|||-+||..+++.+| .++|.|.|.|. +|.|.+++.+. .+.+-|-|+|++.-.|+.||
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~---~~~f~qcg~ikrnK~t~kPki~~y~dkeT~-----~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDN---ADFFLQCGVIKRNKRTGKPKIKIYTDKETG-----APKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred cccccccceeeccCccchHHHH---HHHHhhcceeccCCCCCCcchhcccccccc-----CcCCceeeeecChhhhhhhh
Confidence 3889999999999999998887 69999999997 56666666442 47789999999999999999
Q ss_pred HHhCCCccCCeeEEEeEccCCCccccccCCCCCC
Q 002482 99 QSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSV 132 (917)
Q Consensus 99 qaLNG~~LDGR~LRASfGTTKYCssFLRn~~C~N 132 (917)
...++..+.|.+|+|+++..+--..|.|...|..
T Consensus 134 ~~~agkdf~gn~ikvs~a~~r~~ve~~rg~~~~~ 167 (351)
T KOG1995|consen 134 EWFAGKDFCGNTIKVSLAERRTGVESVRGGYPND 167 (351)
T ss_pred hhhccccccCCCchhhhhhhccCcccccccccCc
Confidence 9999999999999999998877778999988765
No 83
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=9e-05 Score=79.75 Aligned_cols=96 Identities=21% Similarity=0.428 Sum_probs=77.7
Q ss_pred hcCCCCccCccCCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCC
Q 002482 11 KAKPKPSEGRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR 90 (917)
Q Consensus 11 k~K~k~~e~Rk~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~ 90 (917)
+-|...+|+|-- ....+||+=|...-.|||+ +.+|..||.|.++.|.+..++. .+|+|||.|.+
T Consensus 6 qvkpadsesrg~-------~drklfvgml~kqq~e~dv---rrlf~pfG~~~e~tvlrg~dg~------sKGCAFVKf~s 69 (371)
T KOG0146|consen 6 QVKPADSESRGG-------DDRKLFVGMLNKQQSEDDV---RRLFQPFGNIEECTVLRGPDGN------SKGCAFVKFSS 69 (371)
T ss_pred cccccccccCCc-------cchhhhhhhhcccccHHHH---HHHhcccCCcceeEEecCCCCC------CCCceEEEecc
Confidence 456677777743 3456899999999999999 5899999999999999877653 57899999999
Q ss_pred HHHHHHHHHHhCCCc-cCC--eeEEEeEccCCCcc
Q 002482 91 EDDAIRCIQSVHSYI-LDG--RPLRACFGTTKYCH 122 (917)
Q Consensus 91 ~EDA~rAIqaLNG~~-LDG--R~LRASfGTTKYCs 122 (917)
.-||..||.+|+|.. +-| ..|-|-|+-|..-.
T Consensus 70 ~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 70 HAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred chHHHHHHHHhcccccCCCCccceEEEeccchHHH
Confidence 999999999999975 555 45888898775433
No 84
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.63 E-value=8.7e-05 Score=83.73 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=61.8
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
+-..|+|.|||.+.|=.- | ++-|-.||.|.-..|+.+-. .+ +-|.|.++|+|++|+..|||..|+||
T Consensus 535 Ka~qIiirNlP~dfTWqm-l--rDKfre~G~v~yadime~Gk--------sk--GVVrF~s~edAEra~a~Mngs~l~Gr 601 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQM-L--RDKFREIGHVLYADIMENGK--------SK--GVVRFFSPEDAERACALMNGSRLDGR 601 (608)
T ss_pred cccEEEEecCCccccHHH-H--HHHHHhccceehhhhhccCC--------cc--ceEEecCHHHHHHHHHHhccCcccCc
Confidence 446799999999998754 4 68899999999988853321 23 38999999999999999999999999
Q ss_pred eEEEeE
Q 002482 110 PLRACF 115 (917)
Q Consensus 110 ~LRASf 115 (917)
.|+|.|
T Consensus 602 ~I~V~y 607 (608)
T KOG4212|consen 602 NIKVTY 607 (608)
T ss_pred eeeeee
Confidence 999987
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.61 E-value=8.9e-05 Score=83.83 Aligned_cols=80 Identities=19% Similarity=0.395 Sum_probs=66.0
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEE
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 113 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRA 113 (917)
|||.+||.+++.++| ++.|.+||.|++..|.....+. ..+ ++|||+|.+.+++..||++- -..++||.|.|
T Consensus 291 i~V~nlP~da~~~~l---~~~Fk~FG~Ik~~~I~vr~~~~----~~~-~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~V 361 (419)
T KOG0116|consen 291 IFVKNLPPDATPAEL---EEVFKQFGPIKEGGIQVRSPGG----KNP-CFGFVEFENAAAVQNAIEAS-PLEIGGRKLNV 361 (419)
T ss_pred eEeecCCCCCCHHHH---HHHHhhcccccccceEEeccCC----CcC-ceEEEEEeecchhhhhhhcC-ccccCCeeEEE
Confidence 999999999988886 7999999999999996543211 134 89999999999999999995 67899999998
Q ss_pred eEccCCCcc
Q 002482 114 CFGTTKYCH 122 (917)
Q Consensus 114 SfGTTKYCs 122 (917)
.--.+.+..
T Consensus 362 eek~~~~~g 370 (419)
T KOG0116|consen 362 EEKRPGFRG 370 (419)
T ss_pred Eeccccccc
Confidence 866555444
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.54 E-value=3.2e-05 Score=81.24 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=63.9
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
+|||++|-..+++ ||| .|+|-|-|.|+||.|...+.+. .. ||||.|.++-...-||+.+||..+.|+.|+
T Consensus 11 tl~v~n~~~~v~e-elL--~ElfiqaGPV~kv~ip~~~d~~------~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 11 TLLVQNMYSGVSE-ELL--SELFIQAGPVYKVGIPSGQDQE------QK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred HHHHHhhhhhhhH-HHH--HHHhhccCceEEEeCCCCccCC------Cc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 5799999999865 566 7999999999999998776542 34 899999999999999999999999999998
Q ss_pred EeE
Q 002482 113 ACF 115 (917)
Q Consensus 113 ASf 115 (917)
+.+
T Consensus 81 ~~~ 83 (267)
T KOG4454|consen 81 RTL 83 (267)
T ss_pred ccc
Confidence 764
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.48 E-value=0.00021 Score=75.26 Aligned_cols=82 Identities=10% Similarity=0.202 Sum_probs=72.3
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
+.-..|||+++.+..+.+++ .+.|.-+|.|..|.|..++..+ +++++|||.|.+.+.+..|++ |||..+.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~---e~hf~~Cg~i~~~ti~~d~~~~-----~~k~~~yvef~~~~~~~~ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKI---ELHFESCGGINRVTVPKDKFRG-----HPKGFAYVEFSSYELVEEAYK-LDGSEIPG 169 (231)
T ss_pred cCCceEEEeccccccccchh---hheeeccCCccceeeeccccCC-----CcceeEEEecccHhhhHHHhh-cCCccccc
Confidence 34467999999999998886 7899999999998888776543 368899999999999999999 99999999
Q ss_pred eeEEEeEccCC
Q 002482 109 RPLRACFGTTK 119 (917)
Q Consensus 109 R~LRASfGTTK 119 (917)
+.+.+.+-.+.
T Consensus 170 ~~i~vt~~r~~ 180 (231)
T KOG4209|consen 170 PAIEVTLKRTN 180 (231)
T ss_pred ccceeeeeeee
Confidence 99999988776
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.47 E-value=0.0003 Score=79.12 Aligned_cols=103 Identities=23% Similarity=0.285 Sum_probs=80.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
..+|.|.+|.+..-..|.| .-+||-||.|.+|+|..++. -.|-|.|.+...|..|+..|+|..+.|+.
T Consensus 297 n~vllvsnln~~~VT~d~L--ftlFgvYGdVqRVkil~nkk----------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVL--FTLFGVYGDVQRVKILYNKK----------DNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHH--HHHHhhhcceEEEEeeecCC----------cceeeeecchhHHHHHHHHhhcceecCce
Confidence 6788999997765555666 79999999999999987642 36999999999999999999999999999
Q ss_pred EEEeEccCCCccccccCCCCCCCCccccccCCCCCCCCcHHHHHHhhhhh
Q 002482 111 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTRS 160 (917)
Q Consensus 111 LRASfGTTKYCssFLRn~~C~NpdCmYLHE~g~~~DsFTKeEm~~~~tr~ 160 (917)
|||.|.+-. -.-|-..|.++.-+||+...+..+|+
T Consensus 365 lrvt~SKH~---------------~vqlp~egq~d~glT~dy~~spLhrf 399 (492)
T KOG1190|consen 365 LRVTLSKHT---------------NVQLPREGQEDQGLTKDYGNSPLHRF 399 (492)
T ss_pred EEEeeccCc---------------cccCCCCCCccccccccCCCCchhhc
Confidence 999986432 11222345555667777777666664
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.36 E-value=0.00046 Score=78.17 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=67.3
Q ss_pred ccccCe-EEEeCCCCCCChhHHHHHHHhhc-cCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 002482 28 VIQRNL-VYIIGLPINLADEDLLQRKEYFG-QYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 105 (917)
Q Consensus 28 VIQKNL-VYV~GLP~sIAeEDLLKr~EyFG-QYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~ 105 (917)
|-.++. |||.|||+++.=.+| +++|. +-|+|.-|.+..|..++ ++++|-|.|.++|.+++|++.||-+.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdL---KdLvrekvGev~yveLl~D~~GK------~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDL---KDLVREKVGEVEYVELLFDESGK------ARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cccccceEEEecCcchhhhHhH---HHHHHHhcCceEeeeeecccCCC------cCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 444555 999999999988786 56664 78999999999888764 68899999999999999999999999
Q ss_pred cCCeeEEEe
Q 002482 106 LDGRPLRAC 114 (917)
Q Consensus 106 LDGR~LRAS 114 (917)
+.||.|+|-
T Consensus 111 ~~GR~l~vK 119 (608)
T KOG4212|consen 111 VNGRELVVK 119 (608)
T ss_pred ccCceEEEe
Confidence 999999764
No 90
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.27 E-value=0.00031 Score=76.45 Aligned_cols=66 Identities=26% Similarity=0.496 Sum_probs=53.0
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEc-cCCCc
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG-TTKYC 121 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfG-TTKYC 121 (917)
.|-.++||+|.+|+|.....- .. ..-...||.|++.|+|.+|+-.|||.++.||+++|+|- ..||.
T Consensus 304 keEceKyg~V~~viifeip~~---p~-deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs 370 (378)
T KOG1996|consen 304 KEECEKYGKVGNVIIFEIPSQ---PE-DEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFS 370 (378)
T ss_pred HHHHHhhcceeeEEEEecCCC---cc-chhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhh
Confidence 688999999999999755321 11 23456899999999999999999999999999999874 33443
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.24 E-value=0.0012 Score=61.16 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=48.9
Q ss_pred cCeEEEeCCCCCCChhHHHH-HHHhhccCc-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 31 RNLVYIIGLPINLADEDLLQ-RKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLK-r~EyFGQYG-KIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
-++|||.|||....-..+-. -+.++.-+| +|+.|. ++.|+|.|.++|.|.+|.+-|+|..+.|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------~~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------GGTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------CCEEEEEeCCHHHHHHHHHhhccccccc
Confidence 36899999999986554421 267777774 677662 2479999999999999999999999999
Q ss_pred eeEEEeEccC
Q 002482 109 RPLRACFGTT 118 (917)
Q Consensus 109 R~LRASfGTT 118 (917)
+.|.|+|..-
T Consensus 67 ~kI~v~~~~~ 76 (90)
T PF11608_consen 67 NKISVSFSPK 76 (90)
T ss_dssp S--EEESS--
T ss_pred ceEEEEEcCC
Confidence 9999998643
No 92
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.21 E-value=0.0011 Score=70.22 Aligned_cols=80 Identities=15% Similarity=0.340 Sum_probs=60.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC---C
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD---G 108 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD---G 108 (917)
+++||.|||.++.-.|| +-+|-.|---....+..+..+. ..+ +.+|||||.+..+|..|+.+|||..+| |
T Consensus 35 RTLFVSGLP~DvKpREi---ynLFR~f~GYEgslLK~Tsk~~---~~~-~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREI---YNLFRRFHGYEGSLLKYTSKGD---QVC-KPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ceeeeccCCcccCHHHH---HHHhccCCCccceeeeeccCCC---ccc-cceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 67899999999999998 6788777544444443222111 112 358999999999999999999999886 7
Q ss_pred eeEEEeEccC
Q 002482 109 RPLRACFGTT 118 (917)
Q Consensus 109 R~LRASfGTT 118 (917)
.+|++.+++.
T Consensus 108 stLhiElAKS 117 (284)
T KOG1457|consen 108 STLHIELAKS 117 (284)
T ss_pred ceeEeeehhc
Confidence 8899998865
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.00091 Score=77.23 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=54.2
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEc-cCCCc
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFG-TTKYC 121 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfG-TTKYC 121 (917)
+.-+++||.|.+|.|++...... ..-..|.+||.|.+.|++.+|.++|.|..+.||+|.++|- .-||-
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~~--~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDEN--PVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred HHHhcccCceeEEecCCCCCCCC--cCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 45699999999999988732111 1124678999999999999999999999999999999984 33553
No 94
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.10 E-value=0.00058 Score=64.04 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=49.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEE-EeecCCCCc-ccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVS-ISRTATGDI-QHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIv-Inrd~~g~~-q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
..-|.|-|.|+..+. .+| ++|++||.|++.. +.++..+.. ...+..+.-..|+|+++.+|.+|++. ||..+.|
T Consensus 6 ~~wVtVFGfp~~~~~-~Vl---~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPSASN-QVL---RHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSG 80 (100)
T ss_dssp CCEEEEE---GGGHH-HHH---HHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETT
T ss_pred CeEEEEEccCHHHHH-HHH---HHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcC
Confidence 456899999999754 565 8999999999876 222111000 01122455789999999999999997 9999998
Q ss_pred eeE
Q 002482 109 RPL 111 (917)
Q Consensus 109 R~L 111 (917)
..|
T Consensus 81 ~~m 83 (100)
T PF05172_consen 81 SLM 83 (100)
T ss_dssp CEE
T ss_pred cEE
Confidence 765
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.84 E-value=0.0018 Score=53.97 Aligned_cols=52 Identities=25% Similarity=0.645 Sum_probs=42.0
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 98 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAI 98 (917)
+.|=|.|.++... +++| ++|.+||+|.++.+... +-.+||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl---~~F~~fGeI~~~~~~~~-----------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVL---EHFASFGEIVDIYVPES-----------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHH---HHHHhcCCEEEEEcCCC-----------CcEEEEEECCHHHHHhhC
Confidence 4577999998875 4554 79999999999988621 236899999999999984
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.82 E-value=0.0028 Score=59.49 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=38.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 104 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~ 104 (917)
+|+|.|+...++-++| ++.|.+||.|.-|.+.+.. ..|||.|.+.+.|.+|+..+.-.
T Consensus 3 il~~~g~~~~~~re~i---K~~f~~~g~V~yVD~~~G~-----------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDI---KEAFSQFGEVAYVDFSRGD-----------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHH---HHHT-SS--EEEEE--TT------------SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHH---HHHHHhcCCcceEEecCCC-----------CEEEEEECCcchHHHHHHHHHhc
Confidence 6899999999998887 7999999999988876421 26899999999999999987655
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.66 E-value=0.01 Score=68.31 Aligned_cols=72 Identities=19% Similarity=0.424 Sum_probs=59.3
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.|-+.||||+.+++||| +||+-. .|..+++.++. + .+++-|||.|.++||+.+|++. |-..+.-|.|.
T Consensus 12 ~vr~rGLPwsat~~ei~---~Ff~~~-~I~~~~~~r~~-G------r~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIE 79 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEIL---DFFSNC-GIENLEIPRRN-G------RPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIE 79 (510)
T ss_pred EEEecCCCccccHHHHH---HHHhcC-ceeEEEEeccC-C------CcCcceEEEeechHHHHHHHHh-hHHHhCCceEE
Confidence 46678999999999995 999998 57888887763 2 3678999999999999999986 77778888887
Q ss_pred EeEc
Q 002482 113 ACFG 116 (917)
Q Consensus 113 ASfG 116 (917)
|-=+
T Consensus 80 Vf~~ 83 (510)
T KOG4211|consen 80 VFTA 83 (510)
T ss_pred EEcc
Confidence 6544
No 98
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.58 E-value=0.015 Score=54.52 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=64.1
Q ss_pred cCeEEEeCCCCCCChhHHHHH-HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC--
Q 002482 31 RNLVYIIGLPINLADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-- 107 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr-~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD-- 107 (917)
|++|=|.|||-+++.++|+.- .+.| .|+.-=+.++.|.... ...|+|||.|.++++|.+-.+..+|....
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~-----~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNK-----CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCC-----CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 578999999999999987643 3334 4777777787665432 56899999999999999999999999875
Q ss_pred --CeeEEEeEccCC
Q 002482 108 --GRPLRACFGTTK 119 (917)
Q Consensus 108 --GR~LRASfGTTK 119 (917)
.++..++||+..
T Consensus 74 ~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 74 NSKKVCEISYARIQ 87 (97)
T ss_pred CCCcEEEEehhHhh
Confidence 466677777654
No 99
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0039 Score=72.59 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=60.1
Q ss_pred cCeEEEeCCCCCCC-hhHHHHH--HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 31 RNLVYIIGLPINLA-DEDLLQR--KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 31 KNLVYV~GLP~sIA-eEDLLKr--~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
.+.|+|-|+|---. .-+.||. ...|++||+|+++.++.+..++ ..|++|+.|.+..+|..|++.+||..||
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg------tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG------TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC------eeeEEEEEecChhhHHHHHHhcccceec
Confidence 36788899886422 2234553 7899999999999998776653 4689999999999999999999999987
Q ss_pred C-eeEEE
Q 002482 108 G-RPLRA 113 (917)
Q Consensus 108 G-R~LRA 113 (917)
- .++.|
T Consensus 132 knHtf~v 138 (698)
T KOG2314|consen 132 KNHTFFV 138 (698)
T ss_pred ccceEEe
Confidence 4 33444
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.15 E-value=0.0056 Score=68.90 Aligned_cols=84 Identities=20% Similarity=0.380 Sum_probs=65.4
Q ss_pred CccCCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEE---EEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 002482 19 GRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK---VSISRTATGDIQHSANNSCCVYITYSREDDAI 95 (917)
Q Consensus 19 ~Rk~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiK---IvInrd~~g~~q~~~~prGsAFVTFs~~EDA~ 95 (917)
.+.+....|+ |++|-..|||+..+.|||| +|||.|-.-++ |.|..+..+ +++|-|||.|.+.|+|.
T Consensus 270 p~~~~p~~~~--kdcvRLRGLPy~AtvEdIL---~FlgdFa~~i~f~gVHmv~N~qG------rPSGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 270 PARLVPPTRS--KDCVRLRGLPYEATVEDIL---DFLGDFATDIRFQGVHMVLNGQG------RPSGEAFIQMRNAERAR 338 (508)
T ss_pred ccccCCCCCC--CCeeEecCCChhhhHHHHH---HHHHHHhhhcccceeEEEEcCCC------CcChhhhhhhhhhHHHH
Confidence 3445555555 8999999999999999998 89999987654 556555544 47899999999999999
Q ss_pred HHHHHhCCCccCCeeEEE
Q 002482 96 RCIQSVHSYILDGRPLRA 113 (917)
Q Consensus 96 rAIqaLNG~~LDGR~LRA 113 (917)
.|.+..+.+...+|.|.|
T Consensus 339 aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 339 AAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred HHHHHHHHhhcccceEEE
Confidence 999999877665554443
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.12 E-value=0.0032 Score=68.23 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=68.2
Q ss_pred CeEE-EeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 32 NLVY-IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 32 NLVY-V~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
-++| |++|+..+++++| +++|+.+|.|+.|.+.....+ ....++|||.|....++.+|+.. ....++|+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~---~~~~~~~~~i~~~r~~~~~~s-----~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDL---KEHFVSSGEITSVRLPTDEES-----GDSKGFAYVDFSAGNSKKLALND-QTRSIGGRP 255 (285)
T ss_pred ccceeecccccccchHHH---hhhccCcCcceeeccCCCCCc-----cchhhhhhhhhhhchhHHHHhhc-ccCcccCcc
Confidence 3466 9999999998887 699999999999999766543 24678999999999999999999 889999999
Q ss_pred EEEeEccCC
Q 002482 111 LRACFGTTK 119 (917)
Q Consensus 111 LRASfGTTK 119 (917)
+++.++...
T Consensus 256 ~~~~~~~~~ 264 (285)
T KOG4210|consen 256 LRLEEDEPR 264 (285)
T ss_pred cccccCCCC
Confidence 999998553
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.01 E-value=0.043 Score=61.92 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=65.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
...+-|.||...--+-|.| ..+|.+||.|.+|+.++++. +.|-|.+-+.++.++||..||+..+.|..
T Consensus 287 g~VmMVyGLdh~k~N~drl--FNl~ClYGNV~rvkFmkTk~----------gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRL--FNLFCLYGNVERVKFMKTKP----------GTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CcEEEEEeccccccchhhh--hhhhhhcCceeeEEEeeccc----------ceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3457788998776566655 79999999999999998753 46999999999999999999999999999
Q ss_pred EEEeEccCC
Q 002482 111 LRACFGTTK 119 (917)
Q Consensus 111 LRASfGTTK 119 (917)
|.+++....
T Consensus 355 l~v~~SkQ~ 363 (494)
T KOG1456|consen 355 LNVCVSKQN 363 (494)
T ss_pred EEEeecccc
Confidence 999876543
No 103
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.80 E-value=0.0081 Score=64.80 Aligned_cols=76 Identities=13% Similarity=0.291 Sum_probs=63.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
-.||.+-|.-+++++ +| ...|.+|=.-.+-.|.++..+. ...|++||.|.+.+|+.+|+..|||.+++-|+|
T Consensus 191 fRIfcgdlgNevnd~-vl--~raf~Kfpsf~~akviRdkRTg-----KSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDD-VL--ARAFKKFPSFQKAKVIRDKRTG-----KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ceeecccccccccHH-HH--HHHHHhccchhhcccccccccc-----ccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 347888888888765 55 5789999999998998876543 467899999999999999999999999999998
Q ss_pred EEeE
Q 002482 112 RACF 115 (917)
Q Consensus 112 RASf 115 (917)
++.-
T Consensus 263 klRk 266 (290)
T KOG0226|consen 263 KLRK 266 (290)
T ss_pred Hhhh
Confidence 7653
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.79 E-value=0.0083 Score=64.68 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=58.9
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCC---------CcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATG---------DIQHSANNSCCVYITYSREDDAIRCIQS 100 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g---------~~q~~~~prGsAFVTFs~~EDA~rAIqa 100 (917)
....||+++||+.+.-.-| +++|++||+|=.|.+-..... ... ...---++|.|.++..|.++...
T Consensus 73 k~GVvylS~IPp~m~~~rl---Reil~~yGeVGRvylqpE~~s~~~~r~~~~~n~--~~~y~EGWvEF~~KrvAK~iAe~ 147 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRL---REILSQYGEVGRVYLQPEDDSKRAARKRKGGNY--KKLYSEGWVEFISKRVAKRIAEL 147 (278)
T ss_pred cceEEEeccCCCccCHHHH---HHHHHhccccceEEecchhhHHHHHHhhcCCCc--cccchhHHHHHHHHHHHHHHHHH
Confidence 3478999999999977665 899999999999999543321 100 00111368999999999999999
Q ss_pred hCCCccCCee
Q 002482 101 VHSYILDGRP 110 (917)
Q Consensus 101 LNG~~LDGR~ 110 (917)
|||.+|.|+.
T Consensus 148 Lnn~~Iggkk 157 (278)
T KOG3152|consen 148 LNNTPIGGKK 157 (278)
T ss_pred hCCCccCCCC
Confidence 9999999975
No 105
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.76 E-value=0.0055 Score=64.52 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=61.4
Q ss_pred CccC-CCCcccccc--CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHH
Q 002482 19 GRMH-LTNVRVIQR--NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAI 95 (917)
Q Consensus 19 ~Rk~-LanVRVIQK--NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~ 95 (917)
.|+. +...++.-+ ..+.|-+++.++...+| .++|++||++...++. ..++||.|+.++||.
T Consensus 84 ~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl---~d~~~~~g~~~~~~~~-------------~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 84 DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDL---KDHFRPAGEVTYVDAR-------------RNFAFVEFSEQEDAK 147 (216)
T ss_pred CccchhhccCCcccccceeeeccchhhhhHHHH---hhhhcccCCCchhhhh-------------ccccceeehhhhhhh
Confidence 3444 555555333 34667777777777787 7999999999554442 247899999999999
Q ss_pred HHHHHhCCCccCCeeEEE
Q 002482 96 RCIQSVHSYILDGRPLRA 113 (917)
Q Consensus 96 rAIqaLNG~~LDGR~LRA 113 (917)
+||..++|..+.|+.|++
T Consensus 148 ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISV 165 (216)
T ss_pred hcchhccchhhcCceeee
Confidence 999999999999999998
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.65 E-value=0.022 Score=64.68 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=57.0
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc-CC-eeE
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL-DG-RPL 111 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~L-DG-R~L 111 (917)
+.|.++-+.++- |+| +..|++||+|.||+-... +.++.|-|.|.+.+.|..|-.+|||.-+ +| ..|
T Consensus 153 ~iie~m~ypVsl-DVL--HqvFS~fG~VlKIiTF~K---------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 153 TIIENMFYPVSL-DVL--HQVFSKFGFVLKIITFTK---------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred EEeccceeeeEH-HHH--HHHHhhcceeEEEEEEec---------ccchhhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 456666666665 456 899999999999987643 2468899999999999999999999865 45 578
Q ss_pred EEeEc
Q 002482 112 RACFG 116 (917)
Q Consensus 112 RASfG 116 (917)
|+.|.
T Consensus 221 rId~S 225 (492)
T KOG1190|consen 221 RIDFS 225 (492)
T ss_pred Eeehh
Confidence 88886
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.54 E-value=0.011 Score=68.73 Aligned_cols=83 Identities=16% Similarity=0.294 Sum_probs=70.6
Q ss_pred ccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc
Q 002482 26 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 105 (917)
Q Consensus 26 VRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~ 105 (917)
+-..+.+.+||+|||..+.+..+ .|..+-||.+..-.+..+... ...+++||-.|.+.-.+..||..|||+.
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~---~Ell~~fg~lk~f~lv~d~~~-----g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQV---KELLDSFGPLKAFRLVKDSAT-----GNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred CcccccchhhhccCcCccCHHHH---HHHHHhcccchhheeeccccc-----ccccceeeeeeeCCcchhhhhcccchhh
Confidence 33557789999999999998887 588999999998777666543 2467899999999999999999999999
Q ss_pred cCCeeEEEeEc
Q 002482 106 LDGRPLRACFG 116 (917)
Q Consensus 106 LDGR~LRASfG 116 (917)
+.++.|.|..+
T Consensus 356 lgd~~lvvq~A 366 (500)
T KOG0120|consen 356 LGDKKLVVQRA 366 (500)
T ss_pred hcCceeEeehh
Confidence 99999988765
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.027 Score=65.34 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=75.3
Q ss_pred CCccccccCeEEEeCCCCCCChhHHHHHHHhhc-cCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH--
Q 002482 24 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFG-QYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS-- 100 (917)
Q Consensus 24 anVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFG-QYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqa-- 100 (917)
.+..+-.+-+|||||||.-++-+|| ..+|. -||.|.-+-|..|.+.+ -|.|.|=|||.+...-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eL---A~imd~lyGgV~yaGIDtD~k~K-----YPkGaGRVtFsnqqsYi~AIsarF 434 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEEL---AMIMEDLFGGVLYVGIDTDPKLK-----YPKGAGRVTFSNQQAYIKAISARF 434 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHH---HHHHHHhcCceEEEEeccCcccC-----CCCCcceeeecccHHHHHHHhhhe
Confidence 3445667889999999999999998 67888 89999999998875543 4788999999999999999986
Q ss_pred --hCCCccCCee-EE----------EeEc---cCCCccccccCCCCCCCCccc
Q 002482 101 --VHSYILDGRP-LR----------ACFG---TTKYCHAWIRNMPCSVPDCLY 137 (917)
Q Consensus 101 --LNG~~LDGR~-LR----------ASfG---TTKYCssFLRn~~C~NpdCmY 137 (917)
|+-..++-|+ |+ .+=| ..|+-.+|=++..|...=|-+
T Consensus 435 vql~h~d~~KRVEIkPYv~eDq~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~ 487 (520)
T KOG0129|consen 435 VQLDHTDIDKRVEIKPYVMEDQLCDECGGRRCGGQFAPFFCRNATCFQYYCES 487 (520)
T ss_pred EEEeccccceeeeecceeccccchhhhcCeeccCccCCcccCCccHHhhhchH
Confidence 3333333322 21 1112 124445577777777766643
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.95 E-value=0.19 Score=57.11 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=64.0
Q ss_pred EeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC-C-eeEEE
Q 002482 36 IIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G-RPLRA 113 (917)
Q Consensus 36 V~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD-G-R~LRA 113 (917)
|.|--+.|+. |+| +.+.-..|+|..|+|.+.. +..|-|.|++.+.|.+|-.+|||..|. | .+||+
T Consensus 127 IlNp~YpItv-DVl--y~Icnp~GkVlRIvIfkkn----------gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 127 ILNPQYPITV-DVL--YTICNPQGKVLRIVIFKKN----------GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred eecCccccch-hhh--hhhcCCCCceEEEEEEecc----------ceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 4454456655 556 8999999999999998752 457999999999999999999998763 4 78999
Q ss_pred eEccCCCccccccCCCCC
Q 002482 114 CFGTTKYCHAWIRNMPCS 131 (917)
Q Consensus 114 SfGTTKYCssFLRn~~C~ 131 (917)
.|++.-.-..|-....-|
T Consensus 194 eyAkP~rlnV~knd~Dtw 211 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTW 211 (494)
T ss_pred EecCcceeeeeecCCccc
Confidence 999876555554433333
No 110
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=0.074 Score=58.76 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=51.3
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
.-|-|-|.|+.-+. -|| ..|.+||+|+|.+... .+..-||.|..+-+|.+||.. ||+.|+|-++
T Consensus 198 ~WVTVfGFppg~~s-~vL---~~F~~cG~Vvkhv~~~-----------ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVL---NLFSRCGEVVKHVTPS-----------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHH---HHHHhhCeeeeeecCC-----------CCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 34677898887533 344 6899999999998762 234789999999999999997 9999999764
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=94.18 E-value=0.097 Score=60.68 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=55.6
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiK-IvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
-.|=+.|||+.++++|| .|||.--=.|.+ |-+..++.+ .+++-|||.|+++|.|++|++. |-..|.-|.
T Consensus 104 ~vVRLRGLPfscte~dI---~~FFaGL~Iv~~gi~l~~d~rg------R~tGEAfVqF~sqe~ae~Al~r-hre~iGhRY 173 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDI---VEFFAGLEIVPDGILLPMDQRG------RPTGEAFVQFESQESAEIALGR-HRENIGHRY 173 (510)
T ss_pred ceEEecCCCccCcHHHH---HHHhcCCcccccceeeeccCCC------CcccceEEEecCHHHHHHHHHH-HHHhhccce
Confidence 45778999999999999 699998755555 334444433 3788999999999999999997 445666666
Q ss_pred EEEe
Q 002482 111 LRAC 114 (917)
Q Consensus 111 LRAS 114 (917)
|.|-
T Consensus 174 IEvF 177 (510)
T KOG4211|consen 174 IEVF 177 (510)
T ss_pred EEee
Confidence 6543
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.01 E-value=0.13 Score=61.83 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=62.2
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiK-IvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
.|-|.|+|++++-|||| |||.-|-.|-. |.+-++.++. ++|-+-|-|+++|||.+|...+|+..|..|+|
T Consensus 869 V~~~~n~Pf~v~l~dI~---~FF~dY~~~p~sI~~r~nd~G~------pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIV---EFFNDYEPDPNSIRIRRNDDGV------PTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred EEEecCCCccccHHHHH---HHhcccccCCCceeEeecCCCC------cccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 35677999999999996 99999988875 4444444443 68889999999999999999999999999999
Q ss_pred EEeE
Q 002482 112 RACF 115 (917)
Q Consensus 112 RASf 115 (917)
++..
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8754
No 113
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=93.85 E-value=0.052 Score=58.09 Aligned_cols=63 Identities=14% Similarity=0.322 Sum_probs=51.3
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 106 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~L 106 (917)
.++||.||.+++++++| +.+|..|--..-++|-. + +..+.|||.|++.|.|..|+..|.|+.|
T Consensus 211 stlfianl~~~~~ed~l---~~~~~~~~gf~~l~~~~-~--------~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDEL---KQLLSRYPGFHILKIRA-R--------GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHH---HHHHHhCCCceEEEEec-C--------CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 56899999999988876 68999998766555532 1 1357899999999999999999999876
No 114
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.20 E-value=0.23 Score=52.84 Aligned_cols=77 Identities=13% Similarity=0.338 Sum_probs=63.6
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 28 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 28 VIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
--+.+.+|+.+||.....|. | ..+|.||.--..|.+... .++.|||+|.+...|..|.+++.|+.+-
T Consensus 143 ~ppn~ilf~~niP~es~~e~-l--~~lf~qf~g~keir~i~~----------~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEM-L--SDLFEQFPGFKEIRLIPP----------RSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCcchhHHH-H--HHHHhhCcccceeEeccC----------CCceeEEecchhhhhHHHhhhhccceec
Confidence 34567899999999986554 4 689999999999998743 2468999999999999999999999875
Q ss_pred -CeeEEEeEcc
Q 002482 108 -GRPLRACFGT 117 (917)
Q Consensus 108 -GR~LRASfGT 117 (917)
..++++.|+.
T Consensus 210 ~~~~m~i~~a~ 220 (221)
T KOG4206|consen 210 KKNTMQITFAK 220 (221)
T ss_pred cCceEEecccC
Confidence 7778887753
No 115
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.15 E-value=0.061 Score=63.44 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=56.1
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCc-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc---
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL--- 106 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYG-KIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~L--- 106 (917)
.|.|||.||-.-++.-.| +++.|+-| .|...+|.+=+ + -+||+|.+.+||..-+.+|+|...
T Consensus 444 SnvlhI~nLvRPFTlgQL---kelL~rtgg~Vee~WmDkIK----------S-hCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQL---KELLGRTGGNVEEFWMDKIK----------S-HCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred cceEeeecccccchHHHH---HHHHhhccCchHHHHHHHhh----------c-ceeEecccHHHHHHHHHHHhccccCCC
Confidence 588999999888887776 79999554 45556664322 1 259999999999999999999764
Q ss_pred CCeeEEEeEccC
Q 002482 107 DGRPLRACFGTT 118 (917)
Q Consensus 107 DGR~LRASfGTT 118 (917)
+++-|-|.|++.
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 556677777654
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.11 E-value=0.23 Score=50.10 Aligned_cols=53 Identities=23% Similarity=0.474 Sum_probs=41.5
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEccC
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT 118 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfGTT 118 (917)
-+.|.+||+|+=|++..+ .-+|||.+-+.|.+|+. +||.++.|+.|++..-|+
T Consensus 54 l~~~~~~GevvLvRfv~~-------------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 54 LQKFAQYGEVVLVRFVGD-------------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHCCS-ECEEEEETT-------------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHhCCceEEEEEeCC-------------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 378999999887766532 36999999999998887 699999999999987554
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.96 E-value=0.3 Score=57.11 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=53.5
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCc---EEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSC---CVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prG---sAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
..|||||||+.++|++| ...|++||.++- .=....... ... .+.| ++|+.|+++.....-|.+..- .-++
T Consensus 260 ~KVFvGGlp~dise~~i---~~~F~~FGs~~V-dWP~k~~~~-~~~-ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQI---NASFGQFGSVKV-DWPGKANSR-GRA-PPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred cceeecCCCccccHHHH---HhhcccccceEe-ecCCCcccc-ccC-CCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 56999999999999888 589999998752 112111111 111 2445 999999999887776666553 3344
Q ss_pred eeEEEeEccCC
Q 002482 109 RPLRACFGTTK 119 (917)
Q Consensus 109 R~LRASfGTTK 119 (917)
-.++|+--|.|
T Consensus 333 ~yf~vss~~~k 343 (520)
T KOG0129|consen 333 YYFKVSSPTIK 343 (520)
T ss_pred eEEEEecCccc
Confidence 45677755443
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.60 E-value=0.14 Score=62.86 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 002482 23 LTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 102 (917)
Q Consensus 23 LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLN 102 (917)
|.+..+.-..-++|+||.++...+-| ...|+.||.|..|.+-.. ..+|||.|+..+.|..|.+.|-
T Consensus 447 lG~~kst~ttr~~sgglg~w~p~~~l---~r~fd~fGpir~Idy~hg-----------q~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQPKSTPTTRLQSGGLGPWSPVSRL---NREFDRFGPIRIIDYRHG-----------QPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred ccccccccceeeccCCCCCCChHHHH---HHHhhccCcceeeecccC-----------CcceeeecccCccchhhHHHHh
Confidence 33334555677999999999876655 578999999999876432 2379999999999999999999
Q ss_pred CCccCC--eeEEEeEccC--CCccccccCCCCC
Q 002482 103 SYILDG--RPLRACFGTT--KYCHAWIRNMPCS 131 (917)
Q Consensus 103 G~~LDG--R~LRASfGTT--KYCssFLRn~~C~ 131 (917)
|+.+.| +.|+|.|+.+ ++-...|.-++=.
T Consensus 513 gap~G~P~~r~rvdla~~~~~~Pqq~~~~~p~~ 545 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASPPGATPQQNLLTSPPV 545 (975)
T ss_pred cCcCCCCCcccccccccCCCCChhhhcccCCCC
Confidence 999987 6799999844 5555555544444
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.13 E-value=0.92 Score=39.99 Aligned_cols=56 Identities=25% Similarity=0.551 Sum_probs=43.0
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccC----cceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQY----GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV 101 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQY----GKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaL 101 (917)
++-+.|+|.|+. +++.+|+ ..||..| + ..+|.-..+. ++=|.|.+.+.|.+|+.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI---~~y~~~y~~~~~-~~~IEWIdDt------------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDI---KAYFSEYFDEEG-PFRIEWIDDT------------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHH---HHHHHHhcccCC-CceEEEecCC------------cEEEEECCHHHHHHHHHcC
Confidence 456889999984 5778898 5899999 4 3355544432 4789999999999999875
No 120
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.72 E-value=0.56 Score=48.55 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=43.2
Q ss_pred HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC--CCccCCeeEEEeEccC
Q 002482 52 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH--SYILDGRPLRACFGTT 118 (917)
Q Consensus 52 ~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLN--G~~LDGR~LRASfGTT 118 (917)
+++|.+|+.++.+...+.- ..+-|.|.+.++|.+|...++ +..+.|..||+.||..
T Consensus 13 ~~l~~~~~~~~~~~~L~sF-----------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 13 EELFSTYDPPVQFSPLKSF-----------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHTT-SS-EEEEETTT-----------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHhcCCceEEEEcCCC-----------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 7999999999999887643 247899999999999999999 9999999999999943
No 121
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.56 E-value=0.5 Score=51.51 Aligned_cols=69 Identities=13% Similarity=0.295 Sum_probs=55.0
Q ss_pred ccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 002482 26 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS 103 (917)
Q Consensus 26 VRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG 103 (917)
||--.+--|||++|...+..|.+ .+-|.+||.|..-++..|..+. +++-+.|.|..+-.|.+|...+.-
T Consensus 26 ~rfa~~a~l~V~nl~~~~sndll---~~~f~~fg~~e~av~~vD~r~k------~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 26 VRFAMHAELYVVNLMQGASNDLL---EQAFRRFGPIERAVAKVDDRGK------PTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred EEeeccceEEEEecchhhhhHHH---HHhhhhcCccchheeeeccccc------ccccchhhhhcchhHHHHHHHhcc
Confidence 34335578999999999887665 5899999999998887665442 466789999999999999998843
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.96 E-value=0.17 Score=61.80 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=66.5
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
-|-.|+|.|.|+.-++|++ +.+|.++|.++++.+...+.++ +.|-|||.|.++.+|.+|...+++..+.-+
T Consensus 735 gK~~v~i~g~pf~gt~e~~---k~l~~~~gn~~~~~~vt~r~gk------pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEEL---KSLASKTGNVTSLRLVTVRAGK------PKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred hhhhhheeCCCCCCchHHH---HhhccccCCccccchhhhhccc------cccceeccCCCcchhhhhcccchhhhhhhc
Confidence 3788999999999999887 7999999999999877665553 678999999999999999999998888777
Q ss_pred eEEEeE
Q 002482 110 PLRACF 115 (917)
Q Consensus 110 ~LRASf 115 (917)
.+.+..
T Consensus 806 ~~~v~v 811 (881)
T KOG0128|consen 806 NGEVQV 811 (881)
T ss_pred Cccccc
Confidence 766654
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=88.86 E-value=0.94 Score=51.85 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=45.5
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcce----EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 002482 34 VYIIGLPINLADEDLLQRKEYFGQYGKV----LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 100 (917)
Q Consensus 34 VYV~GLP~sIAeEDLLKr~EyFGQYGKI----iKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqa 100 (917)
|-..|||++.++.|++ +||++--.| .+|-..+..++ +++|-|||.|..+|+|..|++.
T Consensus 164 vRmRGLPfdat~~dVv---~FF~~~cpv~~g~egvLFV~rpdg------rpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVV---EFFGPPCPVTGGTEGVLFVTRPDG------RPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEecCCCCCcchHHHH---HhcCCCCcccCCccceEEEECCCC------CcccceEEEecCHHHHHHHHHH
Confidence 4457999999999995 999864443 45666655554 3688999999999999999986
No 124
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.83 E-value=1.2 Score=41.70 Aligned_cols=56 Identities=16% Similarity=0.416 Sum_probs=43.7
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 102 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLN 102 (917)
|.-||-...|..+...|| .++|..||.|.=-.|+. .+|||...+.+.|..|+..++
T Consensus 8 RdHVFhltFPkeWK~~DI---~qlFspfG~I~VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDI---YQLFSPFGQIYVSWIND-------------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHH---HHHCCCCCCEEEEEECT-------------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhH---HHHhccCCcEEEEEEcC-------------CcEEEEeecHHHHHHHHHHhc
Confidence 455777789999999999 59999999997666652 279999999999999999886
No 125
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=88.47 E-value=0.41 Score=55.09 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=60.1
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeec---CCCCcccCCC------CCcEEEEEeCCHHHHHHHHH
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRT---ATGDIQHSAN------NSCCVYITYSREDDAIRCIQ 99 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd---~~g~~q~~~~------prGsAFVTFs~~EDA~rAIq 99 (917)
+|--+|.|-+||..-..|.| .++||.+|.|+.|.|-+- .... .+.+. ..-+|+|.|+..+.|.+|.+
T Consensus 229 l~srtivaenLP~Dh~~enl---~kiFg~~G~IksIRIckPgaip~d~-r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENL---SKIFGTVGSIKSIRICKPGAIPEDV-RGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHH---HHHhhcccceeeeeecCCCCCCccc-ccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 37778999999999888888 489999999999999643 1100 01111 24579999999999999999
Q ss_pred HhCCCccCCeeEEEe
Q 002482 100 SVHSYILDGRPLRAC 114 (917)
Q Consensus 100 aLNG~~LDGR~LRAS 114 (917)
.++....--..|||-
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 987665433335544
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=88.32 E-value=0.31 Score=58.72 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=64.1
Q ss_pred CCccccc--cCeEEEeCCCCCCChhHHHHHHHhhccCcceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 002482 24 TNVRVIQ--RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 100 (917)
Q Consensus 24 anVRVIQ--KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiK-IvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqa 100 (917)
++|++-. -+.|||-+||..+.+.+++ ++|..--.|.+ |.|.+-... ..+..|||.|.+++++..|...
T Consensus 425 q~vp~P~~ag~~lyv~~lP~~t~~~~~v---~~f~~~~~Ved~I~lt~~P~~------~~~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 425 QNVPFPGGAGGALYVFQLPVMTPIVPPV---NKFMGAAAVEDFIELTRLPTD------LLRPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred CCCCCCCCccceEEeccCCccccccchh---hhhhhhhhhhheeEeccCCcc------cccchhhheeccccccchhhhc
Confidence 3455432 3889999999999888885 78888888888 777554332 2456899999999999999998
Q ss_pred hCCCccCCeeEEEe
Q 002482 101 VHSYILDGRPLRAC 114 (917)
Q Consensus 101 LNG~~LDGR~LRAS 114 (917)
-.-+++.-|.|||.
T Consensus 496 ~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 496 KTKFYPGHRIIRVD 509 (944)
T ss_pred ccccccCceEEEee
Confidence 88778888888875
No 127
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.89 E-value=0.29 Score=56.79 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=55.9
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 28 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 28 VIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
|++..++-+--.|+.+..-..| ...|.+||+|..|.|.... -.|-|||.+..||-+|-. ..|..|+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~l--n~hfA~fG~i~n~qv~~~~-----------~~a~vTF~t~aeag~a~~-s~~avln 434 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADL--NPHFAQFGEIENIQVDYSS-----------LHAVVTFKTRAEAGEAYA-SHGAVLN 434 (526)
T ss_pred hcccchhhhhccCCCCchHhhh--hhhhhhcCccccccccCch-----------hhheeeeeccccccchhc-cccceec
Confidence 4455555555566665443333 6899999999999986431 247999999999977765 5899999
Q ss_pred CeeEEEeEc
Q 002482 108 GRPLRACFG 116 (917)
Q Consensus 108 GR~LRASfG 116 (917)
+|-||+-|-
T Consensus 435 nr~iKl~wh 443 (526)
T KOG2135|consen 435 NRFIKLFWH 443 (526)
T ss_pred CceeEEEEe
Confidence 999998874
No 128
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=85.39 E-value=0.77 Score=51.98 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=56.3
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
+|-.+||+||-|.++++|||+--.-.|-- .|.+|+...++... ..+|+|.|........++-++-|--++|+|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~-~~~dmKFFENR~NG-----QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLA-QFADMKFFENRTNG-----QSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHH-HHhhhhhhhcccCC-----cccceEEEEecchHHHHHHHHhcccceecCC
Confidence 56789999999999999998642333322 45666665444322 3678999999998888888888888889887
Q ss_pred eE
Q 002482 110 PL 111 (917)
Q Consensus 110 ~L 111 (917)
.-
T Consensus 153 ~P 154 (498)
T KOG4849|consen 153 SP 154 (498)
T ss_pred CC
Confidence 53
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=82.30 E-value=1.5 Score=50.84 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=59.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCc-cCCee
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI-LDGRP 110 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~-LDGR~ 110 (917)
|.+|+++|.+..+-.|| ...||-- |+-.+.. +--..++|||.+.++.-|.+||+.++|.. +.|+.
T Consensus 2 nklyignL~p~~~psdl---~svfg~a----k~~~~g~-------fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDL---ESVFGDA----KIPGSGQ-------FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHH---HHHhccc----cCCCCcc-------eeeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 67899999999999887 6778765 2222111 11246789999999999999999999975 89999
Q ss_pred EEEeEccCCCcc
Q 002482 111 LRACFGTTKYCH 122 (917)
Q Consensus 111 LRASfGTTKYCs 122 (917)
+.+.+...|...
T Consensus 68 ~e~~~sv~kkqr 79 (584)
T KOG2193|consen 68 QEVEHSVPKKQR 79 (584)
T ss_pred eeccchhhHHHH
Confidence 999988665443
No 130
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.76 E-value=2 Score=38.23 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=25.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 84 VYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 84 AFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
-||.|.+-+||++|..+.||..+.+..|.
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 49999999999999999999988776654
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=81.76 E-value=0.36 Score=59.44 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=65.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCee
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~ 110 (917)
..+||+++|...+++.+| +..|+.||+|.+|.|.+.+.+ ....+|||.|.+-..|-+|...+-|..|.--.
T Consensus 372 trTLf~Gnl~~kl~esei---R~af~e~gkve~VDiKtP~~~------~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEI---RPAFDESGKVEEVDIKTPHIK------TESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred hhhhhhcCcccchhhhhh---hhhhhhhccccccccccCCCC------cccchhhhhhhccccCcccchhhcCCccccCc
Confidence 357999999999999998 789999999999999765432 23457999999999999999999998886667
Q ss_pred EEEeEcc
Q 002482 111 LRACFGT 117 (917)
Q Consensus 111 LRASfGT 117 (917)
+++-||-
T Consensus 443 ~r~glG~ 449 (975)
T KOG0112|consen 443 HRIGLGQ 449 (975)
T ss_pred ccccccc
Confidence 7777773
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.76 E-value=1.8 Score=44.29 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=42.4
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhcc-CcceE---EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQ-YGKVL---KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 106 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQ-YGKIi---KIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~L 106 (917)
+..|-|..||+.+++++++ +.... +|... -+.-........ +..-..|||.|.+.+++..=++.++|..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~---~~i~~~l~~~~~w~y~~g~~~~~~~~---~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFW---EQISPWLPDEWDWYYFQGKYGKKSFK---PPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHC---CCCSS--SSE---EEEEEEES-SSST---TS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHH---HHhhhhcccccceEEEecCCCCccCC---CCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4578999999999999874 55555 55552 222011111110 11234699999999999999999999765
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=80.00 E-value=2.3 Score=50.67 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=60.7
Q ss_pred CCCCcccccc-CeEEEeCCCCCCChhHHHHHHHhhcc--CcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 002482 22 HLTNVRVIQR-NLVYIIGLPINLADEDLLQRKEYFGQ--YGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 98 (917)
Q Consensus 22 ~LanVRVIQK-NLVYV~GLP~sIAeEDLLKr~EyFGQ--YGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAI 98 (917)
+...||-++| ..|.+.-||.....|++ +-+|.- .=+++.+....+. .-||||++.+||..|.
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~V---k~lf~~encPk~iscefa~N~------------nWyITfesd~DAQqAy 229 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVV---KALFKGENCPKVISCEFAHND------------NWYITFESDTDAQQAY 229 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHH---HHHhccCCCCCceeeeeeecC------------ceEEEeecchhHHHHH
Confidence 3445665544 55667789998888877 567763 4566766654321 2599999999999999
Q ss_pred HHhCCC--ccCCeeEEEeEccCCCccccc
Q 002482 99 QSVHSY--ILDGRPLRACFGTTKYCHAWI 125 (917)
Q Consensus 99 qaLNG~--~LDGR~LRASfGTTKYCssFL 125 (917)
+.|-.. ++-|+.|.|.. |-|..|+
T Consensus 230 kylreevk~fqgKpImARI---Kaintf~ 255 (684)
T KOG2591|consen 230 KYLREEVKTFQGKPIMARI---KAINTFF 255 (684)
T ss_pred HHHHHHHHhhcCcchhhhh---hhhhccc
Confidence 988763 58899988655 4477765
No 134
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=79.49 E-value=1.9 Score=49.60 Aligned_cols=74 Identities=11% Similarity=0.264 Sum_probs=53.0
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 112 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LR 112 (917)
.|.|.||.+.++.+.| +-+||-.|+|..+.+.-+.... ..+.-.-.+||-|.+...+..|- .|..+.+-|+.|-
T Consensus 9 vIqvanispsat~dqm---~tlFg~lGkI~elrlyp~~~d~--~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdrali 82 (479)
T KOG4676|consen 9 VIQVANISPSATKDQM---QTLFGNLGKIPELRLYPNVDDS--KIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALI 82 (479)
T ss_pred eeeecccCchhhHHHH---HHHHhhccccccccccCCCCCc--cCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEE
Confidence 3568999999999888 7999999999999996432211 12223446899999988777664 4555666565544
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=78.80 E-value=0.23 Score=60.72 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=55.2
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 30 QKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
+-..+||.+|++.++++|| .+.|+.||-|..|.|...... ...+|.|||.|..+++|.+||...++..+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl---~~~~~~~~~~e~vqi~~h~n~-----~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDL---SERFSPSGTIEVVQIVIHKNE-----KRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchh---hhhcCccchhhhHHHHHHhhc-----cccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4467999999999999998 789999999887766411111 135789999999999999999987765553
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=78.36 E-value=8.1 Score=39.72 Aligned_cols=70 Identities=14% Similarity=0.293 Sum_probs=52.0
Q ss_pred CeEEEeCCCCCCC-hhHHHHH-HHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCe
Q 002482 32 NLVYIIGLPINLA-DEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 32 NLVYV~GLP~sIA-eEDLLKr-~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR 109 (917)
.+|-|.=|..++. .|| |++ ....+.||+|..|.+- .+-+|-|+|.+...|-+|+.+... ..-|.
T Consensus 87 sTIVVRWlkknm~~~ed-l~sV~~~Ls~fGpI~SVT~c------------GrqsavVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTED-LKSVIQRLSVFGPIQSVTLC------------GRQSAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred eeEEeehhhhcCChHHH-HHHHHHHHHhcCCcceeeec------------CCceEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 4567766665553 234 333 4668999999998764 234799999999999999999875 66688
Q ss_pred eEEEeE
Q 002482 110 PLRACF 115 (917)
Q Consensus 110 ~LRASf 115 (917)
.++|+|
T Consensus 153 m~qCsW 158 (166)
T PF15023_consen 153 MFQCSW 158 (166)
T ss_pred eEEeec
Confidence 888876
No 137
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=73.97 E-value=1.7 Score=31.92 Aligned_cols=20 Identities=30% Similarity=0.694 Sum_probs=18.6
Q ss_pred CccccccCCCCCCCCccccc
Q 002482 120 YCHAWIRNMPCSVPDCLYLH 139 (917)
Q Consensus 120 YCssFLRn~~C~NpdCmYLH 139 (917)
-|.+-|+|-.|..++|.|.|
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCccccCCCeeCCCCCCccc
Confidence 48889999999999999999
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=70.20 E-value=0.38 Score=55.39 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=57.3
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEe-ecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 33 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSIS-RTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 33 LVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvIn-rd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
.+-|.++|+.+.-|- | ..+.++||.+..+... .+. .....-|||...+.+..||..++|.++....+
T Consensus 82 k~Qirnippql~wev-l--d~Ll~qyg~ve~~eqvnt~~---------etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEV-L--DSLLAQYGTVENCEQVNTDS---------ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred hhhHhcCCHHHHHHH-H--HHHHhccCCHhHhhhhccch---------HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 367888999987654 4 7899999999998763 332 23456789999999999999999999999888
Q ss_pred EEeE
Q 002482 112 RACF 115 (917)
Q Consensus 112 RASf 115 (917)
++.|
T Consensus 150 k~~Y 153 (584)
T KOG2193|consen 150 KVGY 153 (584)
T ss_pred hccc
Confidence 8775
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=69.16 E-value=2.9 Score=51.74 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=63.0
Q ss_pred CCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 002482 23 LTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 102 (917)
Q Consensus 23 LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLN 102 (917)
+.+|.-.|-. .|+-+.+-.++.--| .-+|.+||+|+.++..++-. -|-|.|...|.|..|.+++.
T Consensus 291 isnv~plqp~-~~~~nn~v~~tSssL---~~l~s~yg~v~s~wtlr~~N-----------~alvs~~s~~sai~a~dAl~ 355 (1007)
T KOG4574|consen 291 ISNVFPLQPK-QSLENNAVNLTSSSL---ATLCSDYGSVASAWTLRDLN-----------MALVSFSSVESAILALDALQ 355 (1007)
T ss_pred ecccccCcch-hhhhcccccchHHHH---HHHHHhhcchhhheeccccc-----------chhhhhHHHHHHHHhhhhhc
Confidence 3344444422 366666666665554 78999999999999987642 47899999999999999999
Q ss_pred CCcc--CCeeEEEeEccCC
Q 002482 103 SYIL--DGRPLRACFGTTK 119 (917)
Q Consensus 103 G~~L--DGR~LRASfGTTK 119 (917)
|..+ -|-+.||.|+++-
T Consensus 356 gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 356 GKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred CCcccccCCceeEEecccc
Confidence 9875 6888999999874
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=62.58 E-value=8 Score=42.56 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=76.0
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeE
Q 002482 32 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 111 (917)
Q Consensus 32 NLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~L 111 (917)
...||+.+.+.+.+++. ..+|.++|.+....+....... ...++.||-|..++.+..|+...-...++++.+
T Consensus 89 ~~~f~g~~s~~~e~~~~---~~~~~~~g~~~~~~~S~~~~~~-----~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 89 STFFVGELSENIEESED---DNFSSEAGLRVDARSSSLEDSL-----SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccchhhccc---cccchhhcCcccchhhhhcccc-----ccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 45799999999876654 5789999998888776543221 245678999999999999999877779999999
Q ss_pred EEeEccCCCccccccCCCCCCC-----Ccccccc-CCCCCCCCcHHHHH
Q 002482 112 RACFGTTKYCHAWIRNMPCSVP-----DCLYLHD-FGSQEDSFTKDEIV 154 (917)
Q Consensus 112 RASfGTTKYCssFLRn~~C~Np-----dCmYLHE-~g~~~DsFTKeEm~ 154 (917)
.+.+.+..- -+.|.+. .|.+.=. .+.-..+.|++|+.
T Consensus 161 ~~dl~~~~~------~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 161 EKDLNTRRG------LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred cCccccccc------ccccchhcccccCccccceeecccccccchHHHh
Confidence 888876653 2233331 3333333 33445566777765
No 141
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=58.57 E-value=5.9 Score=27.45 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=10.1
Q ss_pred CCCCC-Cccccc
Q 002482 129 PCSVP-DCLYLH 139 (917)
Q Consensus 129 ~C~Np-dCmYLH 139 (917)
.|.|. +|.|.|
T Consensus 7 ~C~~~~~C~f~H 18 (19)
T PF14608_consen 7 NCTNGDNCPFSH 18 (19)
T ss_pred CCCCCCcCccCC
Confidence 39999 999999
No 142
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=53.23 E-value=33 Score=36.79 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=50.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCcc
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 106 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~L 106 (917)
...|.|.|||+.-.=.|| +++.-+-|.|--..|-++ +.+-|.|.++||.+-||..|+...+
T Consensus 115 e~RVvVsGLp~SgSWQDL---KDHmReaGdvCfadv~rD------------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDL---KDHMREAGDVCFADVQRD------------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeEEEecCCCCCchHHH---HHHHHhhCCeeeeeeecc------------cceeeeeeehhhHHHHHHhhccccc
Confidence 466889999999888887 688999999887776654 3568999999999999999987554
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.89 E-value=37 Score=40.16 Aligned_cols=67 Identities=18% Similarity=0.374 Sum_probs=55.8
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCc-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYG-KIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
.+.|.|..+|-.++--|+| .|.+.+= .|..|.|.|+... .++.+-|+|.+.+||..=-...||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll---~F~~~~~~~I~~irivRd~~p-------nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLL---RFCASFIKQISDIRIVRDGMP-------NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHH---HHHHHHhhhhheeEEeecCCC-------ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6889999999999999997 4555544 3778999986542 4789999999999999999999998773
No 144
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=45.41 E-value=18 Score=39.42 Aligned_cols=27 Identities=26% Similarity=0.650 Sum_probs=22.2
Q ss_pred CCccccccCCCCCCCCccccccCCCCCC
Q 002482 119 KYCHAWIRNMPCSVPDCLYLHDFGSQED 146 (917)
Q Consensus 119 KYCssFLRn~~C~NpdCmYLHE~g~~~D 146 (917)
..|.+||-| +|.||+|.|+|-.-.+..
T Consensus 262 pacryfllg-kcnnpncryvhihysena 288 (377)
T KOG1492|consen 262 PACRYFLLG-KCNNPNCRYVHIHYSENA 288 (377)
T ss_pred chhhhhhhc-cCCCCCceEEEEeecCCC
Confidence 457888876 799999999998877655
No 145
>smart00356 ZnF_C3H1 zinc finger.
Probab=44.98 E-value=18 Score=25.44 Aligned_cols=23 Identities=22% Similarity=0.636 Sum_probs=17.4
Q ss_pred CCCccccccCCCCCC-CCccccccC
Q 002482 118 TKYCHAWIRNMPCSV-PDCLYLHDF 141 (917)
Q Consensus 118 TKYCssFLRn~~C~N-pdCmYLHE~ 141 (917)
+..|..| +.-.|.. +.|.|+|+.
T Consensus 4 ~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 4579999 4456876 589999974
No 146
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=43.50 E-value=47 Score=29.29 Aligned_cols=60 Identities=10% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCCChhHHHHHHHhhccCcceE-----EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccCCeeEEEe
Q 002482 40 PINLADEDLLQRKEYFGQYGKVL-----KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 114 (917)
Q Consensus 40 P~sIAeEDLLKr~EyFGQYGKIi-----KIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LDGR~LRAS 114 (917)
-..+...+|+ .++..-+.|. +|.|..+ +.||.-.. +.|.+++..|++..+.|+.|++.
T Consensus 10 ~dg~~~~~iv---~~i~~~~gi~~~~IG~I~I~~~-------------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 10 KDGLTPRDIV---GAICNEAGIPGRDIGRIDIFDN-------------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp GGT--HHHHH---HHHHTCTTB-GGGEEEEEE-SS--------------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred ccCCCHHHHH---HHHHhccCCCHHhEEEEEEeee-------------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 3456666775 5666665544 5666422 56888776 47999999999999999999987
Q ss_pred Ec
Q 002482 115 FG 116 (917)
Q Consensus 115 fG 116 (917)
-+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 53
No 147
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=40.48 E-value=11 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=18.4
Q ss_pred cCCCccccccCCCCCC-CCcccccc
Q 002482 117 TTKYCHAWIRNMPCSV-PDCLYLHD 140 (917)
Q Consensus 117 TTKYCssFLRn~~C~N-pdCmYLHE 140 (917)
.++-|..|++.-.|.. ..|.|+|.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4678999999889999 69999996
No 148
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=40.17 E-value=1.6e+02 Score=28.61 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=47.3
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcc-eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGK-VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 31 KNLVYV~GLP~sIAeEDLLKr~EyFGQYGK-IiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
+..|-|...|+.+..-+.| ..+.+.+-+ |..+.|.++... .++-+-|.|.++++|..--...||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l--~~f~~~~~~~i~~~riird~~p-------nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFL--LFFGAPFREDIEHIRIIRDGTP-------NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHH--HHhhhcccccEEEEEEeeCCCC-------ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3556666666665554444 233444444 556777776432 5789999999999999999999998874
No 149
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.33 E-value=31 Score=44.80 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=11.9
Q ss_pred CCCCCCCCCCchhhhhhhhc
Q 002482 784 TPSSQLNPFEHEARLQLLMQ 803 (917)
Q Consensus 784 ~f~~ql~~~~n~~rlqllmQ 803 (917)
.|..||.++ --|=|.||.-
T Consensus 110 s~lgalkyl-PhavlkLLeN 128 (2365)
T COG5178 110 SYLGALKYL-PHAVLKLLEN 128 (2365)
T ss_pred hhhhhhhhc-hHHHHHHHhc
Confidence 577777777 4455666643
No 150
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=28.29 E-value=52 Score=35.14 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=40.9
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 102 (917)
Q Consensus 29 IQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLN 102 (917)
|++-.||.- +....-++|+ ++-+ |++..|.+-+..... ..-.|.+||||.+.+.|..|++.-.
T Consensus 109 ~~~r~v~~K--~td~ql~~l~---qw~~--~k~~nv~mr~~~~k~----~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 109 IKERTVYKK--ITDDQLDDLN---QWAS--GKGHNVKMRRHGNKA----HPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHhhhhcc--CCHHHHHHHH---HHhc--ccceEeeccccCCCC----CCCCCceEEEeecHHHHHhhhhhhh
Confidence 455667776 2221223442 4444 999999986544321 1246889999999999999998744
No 151
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=27.47 E-value=58 Score=40.09 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=61.5
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCccC
Q 002482 28 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 28 VIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqaLNG~~LD 107 (917)
+.|. +||+-+--..-...-+ ..+|..++.+++..+...-... -....||+.|.++..|..| .++.+..+.
T Consensus 509 ~s~p-~i~~~~~~~~s~~~s~---s~~s~~~~~ltk~k~l~~Cky~-----~~Ct~a~Ce~~HPtaa~~~-~s~p~k~fa 578 (681)
T KOG3702|consen 509 ASQP-TIFVANGHGGSNPDSL---SRHSEKKNELTKAKILTRCKYG-----PACTSAECEFAHPTAAENA-KSLPNKKFA 578 (681)
T ss_pred cCCC-ceecccccccCCCcch---hhCcccccccccceeeccccCC-----CcCCchhhhhcCCcchhhh-hcccccccc
Confidence 4454 5666554333222233 4778899999998886544322 1334799999999877554 445666665
Q ss_pred CeeEEEeEccCCCccccccCCCCCCCCccccccC
Q 002482 108 GRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDF 141 (917)
Q Consensus 108 GR~LRASfGTTKYCssFLRn~~C~NpdCmYLHE~ 141 (917)
-+.++.. +-|.+ +..|.++||.|-|--
T Consensus 579 ~~~~ks~----p~Ck~---~~kCtasDC~~sH~~ 605 (681)
T KOG3702|consen 579 SKCLKSH----PGCKF---GKKCTASDCNYSHAG 605 (681)
T ss_pred ccceecc----ccccc---ccccccccCcccccC
Confidence 5555532 33442 678999999999853
No 152
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.45 E-value=74 Score=34.44 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=24.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCeeEEEeEccCC
Q 002482 84 VYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTK 119 (917)
Q Consensus 84 AFVTFs~~EDA~rAIqaLNG~~LDGR~LRASfGTTK 119 (917)
|||||++.++|..|++.+..... +.+++..+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 79999999999999996654432 34455544433
No 153
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.04 E-value=75 Score=30.73 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=52.3
Q ss_pred cCCCCccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 002482 21 MHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 100 (917)
Q Consensus 21 k~LanVRVIQKNLVYV~GLP~sIAeEDLLKr~EyFGQYGKIiKIvInrd~~g~~q~~~~prGsAFVTFs~~EDA~rAIqa 100 (917)
.........+...+|+.+++..++.+++ .+.|..+|.|..+.+....... ......++.+....++..+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 215 SRGKALLLEKSDNLYVGNLPLKTAEEEL---ADLFKSRGDIVRASLPPSKDGK-----IPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred cccccccccccceeeccccccccchhHH---HHhccccccceeeeccCCCCCc-----ccccccccchhHHHhhhhhhcc
Confidence 3444455566788999999999998887 6999999999777775443321 1233344666666666666655
Q ss_pred hCCCccCC
Q 002482 101 VHSYILDG 108 (917)
Q Consensus 101 LNG~~LDG 108 (917)
.......+
T Consensus 287 ~~~~~~~~ 294 (306)
T COG0724 287 GNKKKILG 294 (306)
T ss_pred ccceeecc
Confidence 44444433
No 154
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=25.10 E-value=38 Score=33.43 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=20.3
Q ss_pred ccccc-ccCCceeecC--CCCccccccCC
Q 002482 892 KFIPS-YEDLKCQMSN--SSNLYNRGFAM 917 (917)
Q Consensus 892 ~~y~~-~e~~k~~m~~--s~d~yNrtfgm 917 (917)
.|||| |+..+++.-| .+|-|.|+|.+
T Consensus 97 ~FyPG~y~g~~l~lf~~~~~~nYYRAf~l 125 (126)
T PF08747_consen 97 VFYPGEYDGNSLRLFGELDDDNYYRAFRL 125 (126)
T ss_pred EECCceecCceeEecCCCCCCCcceeeec
Confidence 78988 7888888877 46778888864
No 155
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=2.6e+02 Score=34.54 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=56.6
Q ss_pred cCeEEEeCCCCC-CChhHHHHHHHhhccCc-ceEEEEEeecCCCCc------ccCC------------------------
Q 002482 31 RNLVYIIGLPIN-LADEDLLQRKEYFGQYG-KVLKVSISRTATGDI------QHSA------------------------ 78 (917)
Q Consensus 31 KNLVYV~GLP~s-IAeEDLLKr~EyFGQYG-KIiKIvInrd~~g~~------q~~~------------------------ 78 (917)
.+.|=|+||-|. +.-+|||.--.-|-.+| .|+.|.|....-|.. -+.|
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 356899999996 67788876556677777 999999953221100 0111
Q ss_pred ------------CCCcEEEEEeCCHHHHHHHHHHhCCCccCC
Q 002482 79 ------------NNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 79 ------------~prGsAFVTFs~~EDA~rAIqaLNG~~LDG 108 (917)
..-++|-|+|.+.+.|..--..+||..+.-
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 124689999999999999999999998864
Done!