Query 002482
Match_columns 917
No_of_seqs 194 out of 833
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 17:01:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002482.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1201-1205//hhsearch_pdb/002482hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 1.0 1 1 148.3 11.0 105 19-125 3-107 (111)
2 3pgw_S U1-70K; protein-RNA com 1.0 1 1 124.4 11.8 93 24-124 95-187 (437)
3 4fxv_A ELAV-like protein 1; RN 1.0 1 1 122.4 10.3 82 29-118 17-98 (99)
4 4f25_A Polyadenylate-binding p 1.0 1 1 120.7 9.6 81 31-121 5-85 (115)
5 3q2s_C Cleavage and polyadenyl 1.0 1 1 120.6 6.4 85 30-122 67-153 (229)
6 3n9u_C Cleavage and polyadenyl 1.0 1 1 120.1 7.8 86 30-123 54-141 (156)
7 2a3j_A U1 small nuclear ribonu 1.0 1 1 119.6 9.6 88 28-123 26-114 (127)
8 3s8s_A Histone-lysine N-methyl 1.0 1 1 119.4 10.6 82 30-119 5-86 (110)
9 2lxi_A RNA-binding protein 10; 1.0 1 1 118.9 5.3 82 31-120 1-84 (91)
10 3ns6_A Eukaryotic translation 1.0 1 1 117.5 6.0 81 31-119 6-93 (100)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=1.00 E-value=1 Score=148.26 Aligned_cols=105 Identities=44% Similarity=0.751 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 76688886422267699957999987367877788422686437999942589875567899708999949899999999
Q 002482 19 GRMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 98 (917)
Q Consensus 19 ~Rk~LanVRVIQKNLVYVvGLP~sIAeEELLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI 98 (917)
+-++++++|+++++.|||+|||+.+++++|++.+++|++||+|.+|.|.++..+. ....++|+|||+|.+.++|.+||
T Consensus 3 s~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~--~~~~~~G~afV~f~~~~~A~~Ai 80 (111)
T 2cpi_A 3 SGSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYA--GSQGPSASAYVTYIRSEDALRAI 80 (111)
T ss_dssp SCSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCC--SSSCCCEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC--CCCCCCEEEEEEECCHHHHHHHH
T ss_conf 8878765220688879997999877999998888886146888899984477867--66787768999978699999999
Q ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 982898669906999671677743223
Q 002482 99 QSVHSYILDGRPLRACFGTTKYCHAWI 125 (917)
Q Consensus 99 ~ALNGs~LdGRvLRASFGTTKYCssFL 125 (917)
+.|||..++||.|++.|+++|+|+.|-
T Consensus 81 ~~lng~~~~gr~l~V~~a~~k~~~~~~ 107 (111)
T 2cpi_A 81 QCVNNVVVDGRTLKASLGTTKYCSYSG 107 (111)
T ss_dssp HHHTTEEETTEEEEEESCCCCSCSSTT
T ss_pred HHHCCCEECCEEEEEEECCCCCCCCCC
T ss_conf 981998799988899964555356668
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=124.45 Aligned_cols=93 Identities=14% Similarity=0.304 Sum_probs=78.6
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf 88642226769995799998736787778842268643799994258987556789970899994989999999998289
Q 002482 24 TNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS 103 (917)
Q Consensus 24 anVRVIQKNLVYVvGLP~sIAeEELLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNG 103 (917)
..+...+.++|||+|||+.+++++| .++|++||+|+.|.|..+..+. ...++|||+|.+.++|.+||..|||
T Consensus 95 ~~~~~~~~~~lfV~nL~~~~te~~L---~~~F~~~G~I~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 95 PNAQGDAFKTLFVARVNYDTTESKL---RREFEVYGPIKRIHMVYSKRSG-----KPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHH---HHHHHHCCCEEEEEEECCCCCC-----CCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 4445899987998489998999999---9999870986487741158889-----7351588862358999999997589
Q ss_pred CCCCCEEEEEEECCCCCCCCC
Q ss_conf 866990699967167774322
Q 002482 104 YILDGRPLRACFGTTKYCHAW 124 (917)
Q Consensus 104 s~LdGRvLRASFGTTKYCssF 124 (917)
..|+|+.|+|.|+..+-...|
T Consensus 167 ~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 167 KKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred CEECCEEEEEEEECCCCCCCC
T ss_conf 888998889988178888888
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=122.37 Aligned_cols=82 Identities=18% Similarity=0.389 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 22676999579999873678777884226864379999425898755678997089999498999999999828986699
Q 002482 29 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 108 (917)
Q Consensus 29 IQKNLVYVvGLP~sIAeEELLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs~LdG 108 (917)
.|.+.|||+|||+.+++++| +++|++||+|..|.|.+++.+. .++|+|||+|.++++|.+||+.+||..++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L---~~~F~~~G~I~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDEL---RSLFSSIGEVESAKLIRDKVAG-----HSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHH---HHHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHH---HHHHHHCCCEEEEEEEECCCCC-----CCCCCEEEEECCHHHHHHHHHHHCCCEECC
T ss_conf 78999999399998999999---9999714988886754538889-----506218999879999999999848998999
Q ss_pred EEEEEEECCC
Q ss_conf 0699967167
Q 002482 109 RPLRACFGTT 118 (917)
Q Consensus 109 RvLRASFGTT 118 (917)
|.|++.|+.+
T Consensus 89 r~l~V~~AkP 98 (99)
T 4fxv_A 89 KTIKVSYARP 98 (99)
T ss_dssp EECEEEECCB
T ss_pred EEEEEEEEEC
T ss_conf 9989997018
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=1.00 E-value=1 Score=120.65 Aligned_cols=81 Identities=15% Similarity=0.326 Sum_probs=72.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67699957999987367877788422686437999942589875567899708999949899999999982898669906
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 110 (917)
Q Consensus 31 KNLVYVvGLP~sIAeEELLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs~LdGRv 110 (917)
.+.|||+|||+.+++++| +++|++||+|..|.|.+++.+ .+++|||+|.+.++|.+||+.+||..++||.
T Consensus 5 ~~~lfV~nLp~~~te~~L---~~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKAL---YDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHH---HHHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHH---HHHHHCCCCEEEEEEEECCCC-------CCCEEEEEECCHHHHHHHHHHCCCCEECCEE
T ss_conf 989998889998899999---999822697778887633899-------8863899989999999999983998889999
Q ss_pred EEEEECCCCCC
Q ss_conf 99967167774
Q 002482 111 LRACFGTTKYC 121 (917)
Q Consensus 111 LRASFGTTKYC 121 (917)
|++.++..+..
T Consensus 75 i~V~~a~~~~~ 85 (115)
T 4f25_A 75 VFVGRFKSRKE 85 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
T ss_conf 79998888644
No 5
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=120.56 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 267699957999987367877788422686--437999942589875567899708999949899999999982898669
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 30 QKNLVYVvGLP~sIAeEELLRk~EyFGQYG--KIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs~Ld 107 (917)
.+..|||+||++.+++++| +++|.+|| +|++|.|.+++.+. ..+++|||+|.+.++|.+||..|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L---~~~F~~~G~~~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDL---TEAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHH---HHHHHTTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CCCEEEEECCCCCCCHHHH---HHHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHCCCCEEC
T ss_conf 8408998598998999999---999998789635899987548999-----50538999979899999999985898679
Q ss_pred CEEEEEEECCCCCCC
Q ss_conf 906999671677743
Q 002482 108 GRPLRACFGTTKYCH 122 (917)
Q Consensus 108 GRvLRASFGTTKYCs 122 (917)
||.|+|.|+..+.+.
T Consensus 139 Gr~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 139 GQNPVVTPVNKQFLS 153 (229)
T ss_dssp TBCCEEEECCHHHHH
T ss_pred CEEEEEEECCCCCCC
T ss_conf 988699877777654
No 6
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=120.07 Aligned_cols=86 Identities=13% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 267699957999987367877788422686--437999942589875567899708999949899999999982898669
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 107 (917)
Q Consensus 30 QKNLVYVvGLP~sIAeEELLRk~EyFGQYG--KIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs~Ld 107 (917)
.+..|||+|||+.+++++| +++|++|| +|..|.|.+++.+. ..+|+|||+|.+.++|.+||..+||..++
T Consensus 54 ~~~~lfVgnLp~~~te~~L---~~~F~~~G~i~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQL---IQVIRSIGVYDVVELKFAENRANG-----QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHH---HHHHHHTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEECCCCCCCHHHH---HHHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHCCCCEEC
T ss_conf 9988999489998999999---999998799617999987449999-----52528999979899999999986999789
Q ss_pred CEEEEEEECCCCCCCC
Q ss_conf 9069996716777432
Q 002482 108 GRPLRACFGTTKYCHA 123 (917)
Q Consensus 108 GRvLRASFGTTKYCss 123 (917)
||.|+|.+++.+....
T Consensus 126 Gr~l~V~~a~~~~~~~ 141 (156)
T 3n9u_C 126 GEKVDVRPATRQNLSQ 141 (156)
T ss_dssp TEECEEEECCHHHHHH
T ss_pred CEEEEEEECCCCCCHH
T ss_conf 9376998847773024
No 7
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=119.64 Aligned_cols=88 Identities=19% Similarity=0.352 Sum_probs=73.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHH-HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCC
Q ss_conf 22267699957999987367877-78842268643799994258987556789970899994989999999998289866
Q 002482 28 VIQRNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 106 (917)
Q Consensus 28 VIQKNLVYVvGLP~sIAeEELLR-k~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs~L 106 (917)
.-..+.|||+||++.+++++|-+ .+++|++||+|.+|.+.++. ..+|+|||+|.+.++|.+||..+||..+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~--------~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD--------DNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC--------SSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC--------CCCCEEEEEECCHHHHHHHHHHHCCCEE
T ss_conf 99988899959998799999999999984257875899963599--------9677799997989999999999789885
Q ss_pred CCEEEEEEECCCCCCCC
Q ss_conf 99069996716777432
Q 002482 107 DGRPLRACFGTTKYCHA 123 (917)
Q Consensus 107 dGRvLRASFGTTKYCss 123 (917)
+||.|++.|+..+-...
T Consensus 98 ~gr~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 98 QGNPLVITFSETPQSQV 114 (127)
T ss_dssp TTSCCEEEECCCCCHHH
T ss_pred CCCEEEEEECCCCCHHC
T ss_conf 79788999824850002
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=119.44 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCE
Q ss_conf 26769995799998736787778842268643799994258987556789970899994989999999998289866990
Q 002482 30 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 109 (917)
Q Consensus 30 QKNLVYVvGLP~sIAeEELLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs~LdGR 109 (917)
..+.|||+||++.+++++| +++|++||+|.+|.|.+++.+. .++|+|||+|.+.++|.+||+.+||..++||
T Consensus 5 p~~~lfV~nL~~~~te~~L---~~~F~~~G~i~~v~i~~d~~tg-----~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFL---KDMCRKYGEVEEVEILLHPRTR-----KHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCCEEEEESCCTTCCHHHH---HHHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHH---HHHHHHCCCEEEEEEEECCCCC-----CEEEEEEEEECCHHHHHHHHHHHCCCEECCE
T ss_conf 9838999799999999999---9999856974489997779999-----4606999998979999999998489988980
Q ss_pred EEEEEECCCC
Q ss_conf 6999671677
Q 002482 110 PLRACFGTTK 119 (917)
Q Consensus 110 vLRASFGTTK 119 (917)
.|++.++..+
T Consensus 77 ~i~V~~a~~~ 86 (110)
T 3s8s_A 77 IIHAQLDIKG 86 (110)
T ss_dssp ECEEEECSTT
T ss_pred EEEEEECCCC
T ss_conf 8999988887
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=118.94 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=72.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHC-CCCCCC
Q ss_conf 67699957999987367877788422686-4379999425898755678997089999498999999999828-986699
Q 002482 31 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH-SYILDG 108 (917)
Q Consensus 31 KNLVYVvGLP~sIAeEELLRk~EyFGQYG-KIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALN-Gs~LdG 108 (917)
.|.|||.|||+.+++++| +++|++|| +|..|.|.+++.+. .++|+|||+|.+.++|.+||+.++ +..++|
T Consensus 1 S~~i~v~nLp~~~te~~l---~~~F~~~G~~v~~v~i~~d~~t~-----~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDI---RGQLQSHGVQAREVRLMRNKSSG-----QSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHH---HHHHHHHTCCCSBCCSSSCSSSC-----CCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEECCCCCCCHHHH---HHHHHHHCCEEEEEEEEECCCCC-----CCCCEEEEEECCHHHHHHHHHHCCCCEEECC
T ss_conf 999999499999999999---98998749875899998549999-----8575289996499999999996279908999
Q ss_pred EEEEEEECCCCC
Q ss_conf 069996716777
Q 002482 109 RPLRACFGTTKY 120 (917)
Q Consensus 109 RvLRASFGTTKY 120 (917)
|.|++.|+.+|.
T Consensus 73 r~i~V~~a~~~~ 84 (91)
T 2lxi_A 73 QKVSMHYSDPKP 84 (91)
T ss_dssp EEEEEECCCSCC
T ss_pred EEEEEEECCCCC
T ss_conf 999999858999
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=1.00 E-value=1 Score=117.47 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=72.4
Q ss_pred CCEEEEECCCC------CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 67699957999------987367877788422686437999942589875567899708999949899999999982898
Q 002482 31 RNLVYIIGLPI------NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 104 (917)
Q Consensus 31 KNLVYVvGLP~------sIAeEELLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~psgsAYVTFss~EDA~kAI~ALNGs 104 (917)
.++|||+|||+ .+++++| +++|++||+|.+|.|.+++.+. .++|+|||+|.+.++|.+||..+||.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L---~~~F~~~G~i~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKAL---TSLFSKAGKVVNMEFPIDEATG-----KTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHH---HHHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH---HHHHHHCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHHCCC
T ss_conf 758999599868757788899999---9999855987699977758999-----61229999989999999999994796
Q ss_pred CCCC-EEEEEEECCCC
Q ss_conf 6699-06999671677
Q 002482 105 ILDG-RPLRACFGTTK 119 (917)
Q Consensus 105 ~LdG-RvLRASFGTTK 119 (917)
.++| |.|++.++..+
T Consensus 78 ~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 78 RLDLKHRLFLYTMKDV 93 (100)
T ss_dssp BSSSSCBCEEEESHHH
T ss_pred CCCCCEEEEEEECCHH
T ss_conf 6389707999987605
Done!