Query 002483
Match_columns 917
No_of_seqs 235 out of 1793
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 17:24:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002483.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1201-1205//hhsearch_pdb/002483hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 1.0 1 1 113.9 6.0 78 837-916 12-89 (91)
2 1x4j_A Ring finger protein 38; 1.0 1 1 104.4 3.9 55 862-916 18-72 (75)
3 1v87_A Deltex protein 2; ring- 1.0 1 1 102.5 6.3 50 866-915 24-93 (114)
4 2ep4_A Ring finger protein 24; 1.0 1 1 101.7 5.7 54 863-916 11-64 (74)
5 2ect_A Ring finger protein 126 1.0 1 1 100.8 4.8 55 862-916 10-64 (78)
6 3dpl_R Ring-box protein 1; ubi 1.0 1 1 100.4 5.5 51 864-914 34-99 (106)
7 4a0k_B E3 ubiquitin-protein li 1.0 1 1 100.3 0.6 53 863-915 44-111 (117)
8 2kiz_A E3 ubiquitin-protein li 1.0 1 1 98.7 6.1 55 862-916 9-63 (69)
9 2ecl_A Ring-box protein 2; RNF 1.0 1 1 98.4 4.8 52 864-915 12-75 (81)
10 4ayc_A E3 ubiquitin-protein li 1.0 1 1 96.7 3.5 45 868-915 54-98 (138)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=113.90 Aligned_cols=78 Identities=28% Similarity=0.579 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88889999999997423011345689999998776644666799951993779921088899988459998686888678
Q 002483 837 DVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 837 ~vstGlSeE~I~k~L~~~k~~~~e~~s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp 916 (917)
....+++++.|. .++..++. .......+...|+||+++|..++.+..++|+|.||..||.+||+.+.+||+||+.+.+
T Consensus 12 ~~~~~~s~~~i~-~lp~~~~~-~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESID-ALPEILVT-EDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHH-TSCEEECC-TTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCCHHHHH-HCCCEEEC-CCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 677898999998-47772443-6656668999884369021589827962799948999999999769968380940799
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=104.37 Aligned_cols=55 Identities=31% Similarity=0.855 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999998776644666799951993779921088899988459998686888678
Q 002483 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 862 ~s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp 916 (917)
....+...|+||+++|..++.+..++|+|.||..||.+||+.+.+||+||+.+.+
T Consensus 18 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 18 NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCCEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 6667999893889352799869987899875799999999749939070880788
No 3
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=102.53 Aligned_cols=50 Identities=30% Similarity=0.498 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCCCC---------------CEEEECCCCHHCHHHHHHHH-----HCCCCCCCCCCCCC
Q ss_conf 9987766446667999---------------51993779921088899988-----45999868688867
Q 002483 866 DLEPCCICQEEYTDGD---------------DLGVLDCGHNFHTDCIKLWL-----MQKNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~CaICLEEf~~ge---------------~V~iLPCgH~FH~~CIkqWL-----~~knTCPICRk~lL 915 (917)
.++.|+||+++|..+. .++.++|+|.||..||.+|| +.+.+||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 9996840781003744433322234557521352299799604999999997036778986999998237
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=101.68 Aligned_cols=54 Identities=33% Similarity=0.892 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999998776644666799951993779921088899988459998686888678
Q 002483 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 863 s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp 916 (917)
...+...|+||+++|..++.+.+++|+|.||.+||.+|++.+.+||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 689999895779201799727870899985499999999859969795934166
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=100.76 Aligned_cols=55 Identities=35% Similarity=0.814 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999998776644666799951993779921088899988459998686888678
Q 002483 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 862 ~s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp 916 (917)
+...+...|+||+++|..++.+.+++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCCCEECCCCCCCCCCEEEECCCCEECHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 4479999892488300699777985889953589999999859908186974587
No 6
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=1.00 E-value=1 Score=100.45 Aligned_cols=51 Identities=27% Similarity=0.639 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCC---------------CEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999987766446667999---------------519937799210888999884599986868886
Q 002483 864 PTDLEPCCICQEEYTDGD---------------DLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~CaICLEEf~~ge---------------~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~l 914 (917)
+.+++.|+||+++|.... .+..++|+|.||..||.+||+.+.+||+||+++
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHCCCCCCCCCCCC
T ss_conf 788989701796684847001023445677663376166486799899999997698586989826
No 7
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=1.00 E-value=1 Score=100.31 Aligned_cols=53 Identities=26% Similarity=0.630 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCC-------------CC--EEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999998776644666799-------------95--199377992108889998845999868688867
Q 002483 863 SPTDLEPCCICQEEYTDG-------------DD--LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 863 s~~e~e~CaICLEEf~~g-------------e~--V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lL 915 (917)
.+..++.|+||+++|... ++ +..++|+|.||..||.+||+.+++||+||+++.
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ECCCC---------------------------------------------------------------
T ss_pred ECCCCCCCEECCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 06899767587944508581121364445666431104775854737999999972990889998645
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=98.66 Aligned_cols=55 Identities=33% Similarity=0.786 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999998776644666799951993779921088899988459998686888678
Q 002483 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 862 ~s~~e~e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lLp 916 (917)
........|+||++.|..++.+..++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 7688999992589131689868986899899899999999859979280960647
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=98.44 Aligned_cols=52 Identities=35% Similarity=0.895 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCCCC-----------CCCEEEE-CCCCHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999877664466679-----------9951993-77992108889998845999868688867
Q 002483 864 PTDLEPCCICQEEYTD-----------GDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~CaICLEEf~~-----------ge~V~iL-PCgH~FH~~CIkqWL~~knTCPICRk~lL 915 (917)
+.+++.|+||+++|.. ++.+..+ +|+|.||.+||.+||+.+++||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 3889999133935656486000225788568994899984475999999986898988297843
No 10
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=96.74 Aligned_cols=45 Identities=36% Similarity=0.893 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCHHCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 877664466679995199377992108889998845999868688867
Q 002483 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 868 e~CaICLEEf~~ge~V~iLPCgH~FH~~CIkqWL~~knTCPICRk~lL 915 (917)
..|+||++.|... +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 54 ~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCC---EECCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9975627232796---67889998469999999976996999998278
Done!