BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002484
(917 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 817 RLDVDNMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEE 876
+D D +SYEELLAL + +G S GLS +TI + + +Y + ++ T+ E C IC+ +
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIASLPSK-RYKEGDNQNGTN-ESCVICRLD 294
Query: 877 YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910
Y D +DL +L C H++H++CI WL +CP+C
Sbjct: 295 YEDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 824 SYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTE-----------TESPTDLEPCCI 872
SYEELL LE+R+G+V+ G + TI + KY ES TD E C I
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTD-EKCTI 297
Query: 873 CQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
C DG+D+ L C H FH C+ WL CPIC+
Sbjct: 298 CLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 824 SYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTE-----------TESPTDLEPCCI 872
SYEELL LE+R+G+V+ G + TI + KY ES TD E C I
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTD-EKCTI 296
Query: 873 CQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
C DG+D+ L C H FH C+ WL CPIC+
Sbjct: 297 CLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 818 LDVDNMSYEELLALEERIGDVSTGLSEETIMKI-MKREKYVSTETESPTDLEPCCICQEE 876
+D D M+YEEL+ L E +G S GLS+E I + K+ K+ S + E C ICQ +
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAG-ERCVICQLK 203
Query: 877 YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
Y G+ L C H +H++CI WL +CP+C +
Sbjct: 204 YKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVF 242
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
+EEL+ LEER+G+V+ G S+ TI + KY VST+ S L
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
C IC +G+D+ L C H FH C+ WL+ CPIC+ T LPT
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 952
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
+EEL+ LEER+G+V+ G S+ TI + KY VST+ S L
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
C IC +G+D+ L C H FH C+ WL+ CPIC+ T LPT
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 965
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
+EEL+ LEER+G+V+ G S+ TI + KY VST+ S L
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
C IC +G+D+ L C H FH C+ WL+ CPIC+ T LPT
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 921
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
+EEL+ LEER+G+V+ G S+ TI + KY VST+ S L
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT---TALPT 917
C IC +G+D+ L C H FH C+ WL+ CPIC+ T LPT
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 957
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
+EEL+ LEER+G+V+ G S+ TI + KY V+T+ S L
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
C IC +G+D+ L C H FH C+ WL+ CPIC+
Sbjct: 935 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 979
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKY--VSTETESPTDLE-------------- 868
+EEL+ LEER+G+V+ G S+ TI + KY V+T+ S L
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 869 -PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
C IC +G+D+ L C H FH C+ WL+ CPIC+
Sbjct: 940 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 984
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 825 YEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETE---------SPTDLEPCCICQE 875
+EEL+ LEER+G+V+ G S+ TI + KY + E C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 876 EYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912
+G+D+ L C H FH C+ WL+ CPIC+
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 976
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 823 MSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDD 882
+S + L E D GL++E I + R Y + L+ C +C EYT+G+
Sbjct: 662 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTR-NYGENDA-----LKTCSVCITEYTEGNK 715
Query: 883 LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
L L C H +H CI WL + + CPIC+ L
Sbjct: 716 LRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 816 MRLDVDNM---SYEELLALEERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCC 871
+ LDVD++ +YE LL L ER+GD GL++ I ++ ++ +S L C
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQL-PSYRFNPDSHQSEQTL--CV 381
Query: 872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
+C ++ L VL C H FHT C+ WL CPIC+ A
Sbjct: 382 VCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 823 MSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDD 882
+S + L E D GL++E I + R + + L+ C +C EYT+G+
Sbjct: 529 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-SFGENDA-----LKTCSVCITEYTEGNK 582
Query: 883 LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
L L C H +H CI WL + + CPIC+ L
Sbjct: 583 LRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 823 MSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTD-LEPCCICQEEYTDGD 881
+S + L E D GL++E I + ST D L+ C +C EYT+G+
Sbjct: 544 LSLAQFFLLNEDDDDQPRGLTKEQIDNL-------STRNFGENDALKTCSVCITEYTEGN 596
Query: 882 DLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
L L C H +H CI WL + + CPIC+ L
Sbjct: 597 KLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 823 MSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTD-LEPCCICQEEYTDGD 881
+S + L E D GL++E I + ST D L+ C +C EYT+G+
Sbjct: 527 LSLAQFFLLNEDDDDQPRGLTKEQIDNL-------STRNFGENDALKTCSVCITEYTEGN 579
Query: 882 DLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
L L C H +H CI WL + + CPIC+ L
Sbjct: 580 KLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 823 MSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDD 882
+S + L E D GL++E I + R + + L+ C +C EYT+G+
Sbjct: 505 LSLAQFFLLNEDDEDQPRGLTKEQIDNLAMR-SFGENDA-----LKTCSVCITEYTEGNK 558
Query: 883 LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
L L C H +H CI WL + + CPIC+ L
Sbjct: 559 LRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 591
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 816 MRLDVDNM---SYEELLALEERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCC 871
+ LDVD++ +YE LL L ER+GD GL++ I ++ ++ +S L C
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQL-PSYRFNPDSHQSEQTL--CV 356
Query: 872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
+C ++ L VL C H FH C+ WL CPIC+ A
Sbjct: 357 VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 399
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 816 MRLDVDNM---SYEELLALEERIGDVST-GLSEETIMKI----MKREKYVSTETESPTDL 867
+ LDVD++ +YE LL L ER+G+ GL++ I ++ E + S +T
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQSEQTL----- 395
Query: 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
C +C ++ L VL C H FH C+ WL CPIC+ A
Sbjct: 396 --CVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADA 440
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 801 FVYHGL-AEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGL-SEETIMKIMKREKYVS 858
+V+ GL E H + L DN YE+LLAL +G + S E + + Y
Sbjct: 697 YVFGGLFPEHHPVLSTVSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYFD 756
Query: 859 TETESPTDLEPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLMQ-KNLCPICKTTALP 916
+ S D C IC E YT+GD L C H FH CI WL N CP+C+ +
Sbjct: 757 DASLSSAD--SCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVT 814
Query: 917 T 917
T
Sbjct: 815 T 815
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 816 MRLDVDNM---SYEELLALEERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCC 871
+ LDVD++ +YE LL L ER+GD GL++ I ++ ++ +S L C
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQL-PSYRFNPDSHQSEQTL--CV 299
Query: 872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
+C ++ L VL C H FH C+ WL CPIC+ A
Sbjct: 300 VCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 342
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALPT 917
C IC EEY DGD L +L C H +H C+ WL + K CP+CK +P+
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALPT 917
C IC EEY DGD L +L C H +H C+ WL + K CP+CK +P+
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 816 MRLDVDN---MSYEELLALEERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCC 871
LDV++ +YE LL L ER+G+ GL++ I + + ++ +S L C
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPNNHQSEQTL--CV 464
Query: 872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
+C ++ L VL C H FH C+ WL CPIC+ A
Sbjct: 465 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 816 MRLDVDN---MSYEELLALEERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCC 871
LDV++ +YE LL L ER+G+ GL++ I + + ++ + +S L C
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPSNHQSEQTL--CV 467
Query: 872 ICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914
+C ++ L VL C H FH C+ WL CPIC+ A
Sbjct: 468 VCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADA 510
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
C IC E+Y DG++L V+ C H FH C+ WL+Q + CP C+
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 334
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
C IC E+Y DG++L V+ C H FH C+ WL+Q + CP C+
Sbjct: 290 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 331
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 842 LSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL 901
++++ IMKI + S E + +D C IC E Y D + +L C H FH +CI WL
Sbjct: 277 VTKKAIMKIPTKTGKFSDEKDLDSDC--CAICIEAYKPTDTIRILPCKHEFHKNCIDPWL 334
Query: 902 MQKNLCPICKTTAL 915
++ CP+CK L
Sbjct: 335 IEHRTCPMCKLDVL 348
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALPT 917
C IC +EY DGD L +L C H +H C+ WL + K CP+CK +P+
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICK 911
C IC +EY DGD L VL C H +H+ C+ WL Q + CPICK
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 860 ETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
+T S + + C IC E+Y DG++L V+ C H FH C+ WL+Q + CP C+
Sbjct: 192 DTLSSSSISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 243
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALPT 917
C IC +EY DGD L +L C H +H C+ WL + K CP+CK +P+
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALPT 917
C IC +EY DGD L +L C H +H C+ WL + K CP+CK +P+
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTALPT 917
C IC +EY DGD L +L C H +H C+ WL + K CP+CK +P+
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
C IC E+Y DG++L V+ C H FH C+ WL+Q + CP C+
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCR 308
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICK 911
C IC +EY DGD L VL C H +H+ C+ WL Q + CPICK
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICK 911
+ + C IC +EY DGD L +L C H +H+ C+ WL Q + CPICK
Sbjct: 226 EYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
C IC E+Y DG++L V+ C H FH C+ WL+Q + CP C+
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCR 307
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910
C IC EE+++G +L V+ C H FH +C+ WL Q CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 837 DVSTGLSEETIMKI----MKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVL-DCGHN 891
+V+ GL E I I K+ V+ E + + + C +C E+ + + L ++ +C H
Sbjct: 97 EVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHV 156
Query: 892 FHTDCIKLWLMQKNLCPICKTTA 914
FH DCI +WL CP+C+T+
Sbjct: 157 FHIDCIDIWLQGNANCPLCRTSV 179
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910
C IC EE+++G +L V+ C H FH C+ WL Q CP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLC 312
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915
SP D E CCIC EY DG +L L C H+FH CI WL + CP+CK L
Sbjct: 332 SPEDAE-CCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNIL 383
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 832 EERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
+ R+GD + +S+ I I K +K ETES D + C +C E Y D + +L C H
Sbjct: 245 QRRLGDAAKKAISKLQIRTIKKGDK----ETES--DFDNCAVCIEGYKPNDVVRILPCRH 298
Query: 891 NFHTDCIKLWLMQKNLCPICKTTAL 915
FH C+ WL+ CP+CK L
Sbjct: 299 LFHKSCVDPWLLDHRTCPMCKMNIL 323
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 832 EERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
+ R+GD + +S+ T + K +K E+ D + C +C E Y D + VL C H
Sbjct: 231 QRRLGDAAKKAISKLTTRTVKKGDK------ETDPDFDHCAVCIESYKQNDVVRVLPCKH 284
Query: 891 NFHTDCIKLWLMQKNLCPICKTTAL 915
FH C+ WL + CP+CK L
Sbjct: 285 VFHKSCVDPWLSEHCTCPMCKLNIL 309
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 841 GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKL 899
GL E+TI K + +E + PT C IC +Y L L DC H FH CI
Sbjct: 121 GLDEDTIQS---YPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDT 177
Query: 900 WLMQKNLCPICKTTALPT 917
WL CP+C+T+ LPT
Sbjct: 178 WLRLNPTCPVCRTSPLPT 195
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 832 EERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
+ R+GD + +S+ T + K +K E+ D + C +C E Y D + VL C H
Sbjct: 231 QRRLGDAAKKAISKLTTRTVKKGDK------ETDPDFDHCAVCIESYKQNDVVRVLPCKH 284
Query: 891 NFHTDCIKLWLMQKNLCPICKTTAL 915
FH C+ WL + CP+CK L
Sbjct: 285 VFHKSCVDPWLSEHCTCPMCKLNIL 309
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 849 KIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCP 908
KI TE + LE C +C+E+YT G+ + L C H FH DCI WL Q + CP
Sbjct: 207 KIQALPTIQITEEHVGSGLE-CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCP 265
Query: 909 ICK 911
+C+
Sbjct: 266 VCR 268
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 832 EERIGDVST-GLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGDDLGVLDCGH 890
+ R+GD + +S+ + I K +K ETES D + C +C E Y D + +L C H
Sbjct: 244 QRRLGDAAKKAISKLQVRTIRKGDK----ETES--DFDNCAVCIEGYKPNDVVRILPCRH 297
Query: 891 NFHTDCIKLWLMQKNLCPICKTTAL 915
FH C+ WL+ CP+CK L
Sbjct: 298 LFHKSCVDPWLLDHRTCPMCKMNIL 322
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT 917
CCIC+E GD + L C H FH C+K WL + N CPIC+ LPT
Sbjct: 230 CCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR-HELPT 276
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 822 NMSYEELLALEERIGDVSTGLSEETIMKIMKREKYVSTETESPTDLEPCCICQEEYTDGD 881
N+ ++LA+ I D+ + E + I++ + +++ DLE C +C+E +G
Sbjct: 24 NLKRLQVLAIMNGI-DMEIEVPEASKRAILELPVHEIVKSDEGGDLE-CSVCKEPAEEGQ 81
Query: 882 DLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911
+L C H FH +CI LWL + N CP+C+
Sbjct: 82 KYRILPCKHEFHEECILLWLKKTNSCPLCR 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,374,766
Number of Sequences: 539616
Number of extensions: 15925028
Number of successful extensions: 42884
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 39698
Number of HSP's gapped (non-prelim): 1934
length of query: 917
length of database: 191,569,459
effective HSP length: 127
effective length of query: 790
effective length of database: 123,038,227
effective search space: 97200199330
effective search space used: 97200199330
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)