Query 002484
Match_columns 917
No_of_seqs 314 out of 1793
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 00:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.4 4.3E-14 9.3E-19 155.8 4.5 49 868-916 230-279 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 1.7E-13 3.7E-18 108.9 1.8 44 868-911 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.1 3.3E-11 7.1E-16 132.1 3.6 53 862-914 282-344 (491)
4 COG5540 RING-finger-containing 99.1 3.4E-11 7.4E-16 129.3 3.5 50 867-916 323-373 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.1 6.6E-11 1.4E-15 104.5 4.0 46 866-911 18-73 (73)
6 PHA02929 N1R/p28-like protein; 99.1 8.9E-11 1.9E-15 124.6 5.2 51 865-915 172-227 (238)
7 PLN03208 E3 ubiquitin-protein 98.9 2.1E-09 4.6E-14 110.7 5.1 48 865-915 16-79 (193)
8 KOG0317 Predicted E3 ubiquitin 98.9 1.3E-09 2.9E-14 117.0 3.8 51 863-916 235-285 (293)
9 KOG0320 Predicted E3 ubiquitin 98.8 2.4E-09 5.2E-14 108.4 4.0 54 861-915 125-178 (187)
10 KOG0823 Predicted E3 ubiquitin 98.8 2.1E-09 4.6E-14 112.7 3.4 50 863-915 43-95 (230)
11 cd00162 RING RING-finger (Real 98.8 6.6E-09 1.4E-13 80.0 3.9 44 869-914 1-45 (45)
12 PF13920 zf-C3HC4_3: Zinc fing 98.7 4.8E-09 1E-13 85.7 2.6 46 867-915 2-48 (50)
13 KOG0802 E3 ubiquitin ligase [P 98.7 4.7E-09 1E-13 123.3 2.0 52 864-915 288-341 (543)
14 PF13923 zf-C3HC4_2: Zinc fing 98.7 8.2E-09 1.8E-13 80.4 2.7 39 870-910 1-39 (39)
15 PF12861 zf-Apc11: Anaphase-pr 98.7 1.7E-08 3.6E-13 91.9 3.9 49 866-914 20-81 (85)
16 PHA02926 zinc finger-like prot 98.6 2.2E-08 4.8E-13 104.8 3.9 51 864-914 167-229 (242)
17 smart00504 Ubox Modified RING 98.6 4.7E-08 1E-12 82.4 4.4 45 868-915 2-46 (63)
18 PF14634 zf-RING_5: zinc-RING 98.5 7.3E-08 1.6E-12 77.2 3.9 44 869-912 1-44 (44)
19 PF15227 zf-C3HC4_4: zinc fing 98.5 6.3E-08 1.4E-12 77.3 2.6 38 870-910 1-42 (42)
20 smart00184 RING Ring finger. E 98.5 1.5E-07 3.2E-12 70.0 4.0 38 870-910 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.5 9.7E-08 2.1E-12 108.2 3.8 49 864-915 23-71 (397)
22 PF00097 zf-C3HC4: Zinc finger 98.4 9.9E-08 2.2E-12 74.5 2.3 39 870-910 1-41 (41)
23 COG5194 APC11 Component of SCF 98.4 3.4E-07 7.5E-12 82.1 4.0 42 873-914 37-80 (88)
24 COG5574 PEX10 RING-finger-cont 98.3 3.9E-07 8.5E-12 97.4 2.8 49 865-916 213-263 (271)
25 KOG0828 Predicted E3 ubiquitin 98.2 5.6E-07 1.2E-11 102.3 2.3 53 864-916 568-635 (636)
26 KOG1734 Predicted RING-contain 98.1 6.6E-07 1.4E-11 95.7 0.5 51 864-914 221-280 (328)
27 KOG2164 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 100.3 3.0 47 867-916 186-237 (513)
28 KOG1493 Anaphase-promoting com 98.1 1.1E-06 2.5E-11 78.3 1.0 50 865-914 18-80 (84)
29 KOG0287 Postreplication repair 98.1 1.4E-06 3E-11 95.7 1.7 47 866-915 22-68 (442)
30 PF04564 U-box: U-box domain; 98.0 2.1E-06 4.6E-11 75.8 2.2 46 867-915 4-50 (73)
31 smart00744 RINGv The RING-vari 98.0 5E-06 1.1E-10 68.7 4.0 42 869-911 1-49 (49)
32 PF13445 zf-RING_UBOX: RING-ty 98.0 4.1E-06 9E-11 67.5 2.8 38 870-908 1-43 (43)
33 KOG2177 Predicted E3 ubiquitin 98.0 2.6E-06 5.6E-11 87.4 1.8 45 864-911 10-54 (386)
34 COG5432 RAD18 RING-finger-cont 98.0 3.6E-06 7.7E-11 90.9 2.6 46 866-914 24-69 (391)
35 COG5219 Uncharacterized conser 97.8 5.8E-06 1.3E-10 99.4 0.3 53 863-915 1465-1523(1525)
36 KOG2930 SCF ubiquitin ligase, 97.7 1.8E-05 3.9E-10 74.4 2.7 52 863-914 42-107 (114)
37 PF11793 FANCL_C: FANCL C-term 97.7 8.3E-06 1.8E-10 71.9 0.2 48 867-914 2-65 (70)
38 KOG4265 Predicted E3 ubiquitin 97.7 1.9E-05 4E-10 87.9 2.7 49 865-916 288-337 (349)
39 KOG0825 PHD Zn-finger protein 97.6 1.2E-05 2.6E-10 95.5 -0.9 52 865-916 121-172 (1134)
40 KOG4445 Uncharacterized conser 97.5 3.2E-05 6.8E-10 84.2 1.4 54 862-915 110-186 (368)
41 KOG1039 Predicted E3 ubiquitin 97.5 4.6E-05 1E-09 85.4 2.4 50 865-914 159-220 (344)
42 KOG0978 E3 ubiquitin ligase in 97.3 0.00014 3E-09 87.4 3.4 47 867-916 643-690 (698)
43 KOG4172 Predicted E3 ubiquitin 97.2 7.6E-05 1.6E-09 63.1 0.1 46 867-915 7-54 (62)
44 KOG1785 Tyrosine kinase negati 97.2 0.00012 2.5E-09 82.2 1.1 46 868-916 370-417 (563)
45 KOG0311 Predicted E3 ubiquitin 97.2 5E-05 1.1E-09 84.3 -1.9 48 866-915 42-90 (381)
46 KOG1428 Inhibitor of type V ad 97.1 0.00022 4.8E-09 88.6 2.7 52 863-914 3482-3543(3738)
47 PF14835 zf-RING_6: zf-RING of 97.0 0.00016 3.4E-09 63.1 -0.1 44 868-915 8-51 (65)
48 KOG4692 Predicted E3 ubiquitin 96.9 0.00076 1.6E-08 75.0 3.6 51 862-915 417-467 (489)
49 KOG0804 Cytoplasmic Zn-finger 96.8 0.00059 1.3E-08 77.9 2.3 50 864-915 172-222 (493)
50 KOG4159 Predicted E3 ubiquitin 96.8 0.00056 1.2E-08 78.2 2.1 48 865-915 82-129 (398)
51 KOG4275 Predicted E3 ubiquitin 96.8 0.00043 9.2E-09 75.5 0.7 42 867-915 300-342 (350)
52 PF11789 zf-Nse: Zinc-finger o 96.4 0.0015 3.2E-08 55.9 1.7 43 865-909 9-53 (57)
53 KOG0297 TNF receptor-associate 96.4 0.0013 2.9E-08 75.2 1.9 49 864-915 18-67 (391)
54 KOG2660 Locus-specific chromos 96.4 0.00082 1.8E-08 74.5 -0.1 49 864-914 12-60 (331)
55 KOG2879 Predicted E3 ubiquitin 96.3 0.0032 6.9E-08 68.5 3.7 52 863-916 235-288 (298)
56 KOG1814 Predicted E3 ubiquitin 96.3 0.0026 5.6E-08 72.3 3.0 47 867-913 184-238 (445)
57 COG5152 Uncharacterized conser 96.3 0.0016 3.4E-08 67.9 1.1 43 868-913 197-239 (259)
58 KOG1941 Acetylcholine receptor 96.3 0.0015 3.3E-08 73.5 1.2 46 867-912 365-413 (518)
59 KOG1002 Nucleotide excision re 96.2 0.0023 4.9E-08 74.3 1.8 50 862-914 531-585 (791)
60 KOG0801 Predicted E3 ubiquitin 96.0 0.0016 3.4E-08 66.0 -0.2 34 861-894 171-204 (205)
61 KOG3970 Predicted E3 ubiquitin 95.7 0.0095 2.1E-07 63.2 4.0 49 867-916 50-106 (299)
62 KOG1813 Predicted E3 ubiquitin 95.7 0.0033 7.2E-08 68.9 0.7 45 867-914 241-285 (313)
63 KOG3039 Uncharacterized conser 95.6 0.0085 1.8E-07 64.4 3.3 50 866-915 220-270 (303)
64 PHA02825 LAP/PHD finger-like p 95.5 0.014 3E-07 59.3 4.0 48 863-914 4-58 (162)
65 PF05883 Baculo_RING: Baculovi 95.4 0.0083 1.8E-07 59.5 2.2 37 867-903 26-68 (134)
66 KOG2114 Vacuolar assembly/sort 95.3 0.014 3.1E-07 71.2 4.0 42 867-913 840-881 (933)
67 COG5236 Uncharacterized conser 95.2 0.014 3E-07 65.2 3.4 53 859-914 53-107 (493)
68 PHA03096 p28-like protein; Pro 95.2 0.0097 2.1E-07 65.7 2.2 45 868-912 179-231 (284)
69 PF10367 Vps39_2: Vacuolar sor 95.2 0.0067 1.4E-07 55.9 0.7 33 865-898 76-108 (109)
70 KOG1571 Predicted E3 ubiquitin 94.9 0.01 2.2E-07 66.7 1.4 43 866-914 304-346 (355)
71 PF04641 Rtf2: Rtf2 RING-finge 94.9 0.026 5.7E-07 61.3 4.2 51 864-915 110-161 (260)
72 KOG2034 Vacuolar sorting prote 94.8 0.01 2.2E-07 72.9 1.0 37 864-901 814-850 (911)
73 PF12906 RINGv: RING-variant d 94.6 0.017 3.6E-07 47.6 1.5 40 870-910 1-47 (47)
74 PHA02862 5L protein; Provision 94.6 0.024 5.3E-07 56.8 2.8 47 868-914 3-52 (156)
75 KOG1952 Transcription factor N 94.4 0.028 6E-07 68.8 3.1 46 866-911 190-243 (950)
76 PF14570 zf-RING_4: RING/Ubox 94.1 0.032 7E-07 46.5 2.1 44 870-914 1-47 (48)
77 KOG0827 Predicted E3 ubiquitin 93.9 0.0036 7.7E-08 70.7 -5.0 50 866-915 195-245 (465)
78 COG5222 Uncharacterized conser 93.7 0.038 8.1E-07 60.9 2.3 42 868-912 275-318 (427)
79 KOG0826 Predicted E3 ubiquitin 93.7 0.05 1.1E-06 60.7 3.3 49 864-914 297-345 (357)
80 KOG2932 E3 ubiquitin ligase in 93.5 0.03 6.4E-07 62.0 1.1 42 870-915 93-134 (389)
81 KOG1001 Helicase-like transcri 93.0 0.041 8.8E-07 67.3 1.5 43 868-914 455-499 (674)
82 PF10272 Tmpp129: Putative tra 93.0 0.14 3E-06 58.5 5.5 52 863-914 267-350 (358)
83 KOG3268 Predicted E3 ubiquitin 92.2 0.061 1.3E-06 55.6 1.2 51 864-914 162-227 (234)
84 COG5175 MOT2 Transcriptional r 91.0 0.15 3.3E-06 57.2 2.8 51 864-914 11-63 (480)
85 PF14447 Prok-RING_4: Prokaryo 91.0 0.1 2.2E-06 44.7 1.1 46 866-916 6-51 (55)
86 KOG1609 Protein involved in mR 91.0 0.1 2.2E-06 56.9 1.3 49 866-914 77-133 (323)
87 KOG3002 Zn finger protein [Gen 90.9 0.13 2.9E-06 57.3 2.2 45 864-915 45-91 (299)
88 KOG0298 DEAD box-containing he 90.4 0.079 1.7E-06 67.5 -0.1 45 866-912 1152-1196(1394)
89 KOG1940 Zn-finger protein [Gen 90.2 0.15 3.2E-06 56.4 1.8 44 869-912 160-204 (276)
90 COG5183 SSM4 Protein involved 90.2 0.25 5.5E-06 60.5 3.8 50 864-914 9-65 (1175)
91 KOG3053 Uncharacterized conser 88.5 0.21 4.4E-06 54.5 1.3 52 863-914 16-81 (293)
92 PF08746 zf-RING-like: RING-li 88.1 0.18 3.9E-06 40.9 0.4 41 870-910 1-43 (43)
93 PF03854 zf-P11: P-11 zinc fin 87.6 0.17 3.7E-06 42.2 0.0 42 869-915 4-46 (50)
94 KOG1100 Predicted E3 ubiquitin 87.3 0.26 5.5E-06 52.4 1.2 39 870-915 161-200 (207)
95 KOG0825 PHD Zn-finger protein 86.8 0.37 8.1E-06 58.9 2.3 50 865-914 94-153 (1134)
96 KOG1829 Uncharacterized conser 86.7 0.42 9.1E-06 57.5 2.6 43 865-910 509-556 (580)
97 KOG1812 Predicted E3 ubiquitin 86.2 0.68 1.5E-05 53.4 3.9 41 864-904 143-184 (384)
98 KOG0309 Conserved WD40 repeat- 86.1 0.41 9E-06 58.4 2.1 26 884-909 1044-1069(1081)
99 KOG4362 Transcriptional regula 83.2 0.34 7.3E-06 59.1 -0.3 44 868-914 22-68 (684)
100 PF05290 Baculo_IE-1: Baculovi 82.3 1.7 3.8E-05 43.5 4.3 50 866-915 79-132 (140)
101 PF14446 Prok-RING_1: Prokaryo 81.2 1.7 3.6E-05 37.4 3.2 43 866-912 4-49 (54)
102 KOG3899 Uncharacterized conser 80.8 1.7 3.6E-05 48.4 3.9 27 888-914 325-364 (381)
103 COG5220 TFB3 Cdk activating ki 78.8 1.1 2.4E-05 48.6 1.8 46 866-911 9-60 (314)
104 KOG2066 Vacuolar assembly/sort 77.5 1.1 2.4E-05 55.3 1.4 44 866-910 783-830 (846)
105 KOG1815 Predicted E3 ubiquitin 70.7 2.7 5.9E-05 49.2 2.4 37 865-903 68-104 (444)
106 KOG3005 GIY-YIG type nuclease 69.8 2.3 5E-05 46.9 1.4 47 868-914 183-242 (276)
107 KOG1812 Predicted E3 ubiquitin 69.7 4.3 9.4E-05 47.0 3.7 42 868-910 307-351 (384)
108 KOG2817 Predicted E3 ubiquitin 68.8 4 8.6E-05 47.2 3.1 47 867-913 334-383 (394)
109 KOG0802 E3 ubiquitin ligase [P 68.4 1.9 4.1E-05 51.8 0.5 44 864-914 476-519 (543)
110 PF02891 zf-MIZ: MIZ/SP-RING z 68.1 2.8 6E-05 35.1 1.3 42 869-913 4-50 (50)
111 KOG3161 Predicted E3 ubiquitin 65.0 2.3 5E-05 51.5 0.3 39 868-908 12-51 (861)
112 KOG3579 Predicted E3 ubiquitin 62.9 3.1 6.8E-05 46.2 0.8 39 867-905 268-307 (352)
113 KOG2807 RNA polymerase II tran 61.3 5.9 0.00013 44.9 2.6 51 862-912 325-375 (378)
114 KOG3039 Uncharacterized conser 60.2 5.2 0.00011 43.8 1.9 35 865-902 41-75 (303)
115 KOG4718 Non-SMC (structural ma 58.6 4.7 0.0001 43.3 1.2 43 866-910 180-222 (235)
116 PF13901 DUF4206: Domain of un 58.4 6.8 0.00015 41.5 2.3 42 866-912 151-197 (202)
117 smart00249 PHD PHD zinc finger 54.1 8.1 0.00018 29.7 1.6 32 869-900 1-32 (47)
118 KOG0824 Predicted E3 ubiquitin 53.1 4 8.7E-05 45.8 -0.4 53 862-916 100-152 (324)
119 KOG0269 WD40 repeat-containing 52.0 9.6 0.00021 47.3 2.5 40 869-909 781-820 (839)
120 KOG2169 Zn-finger transcriptio 48.5 19 0.00041 44.5 4.3 42 868-914 307-355 (636)
121 KOG2068 MOT2 transcription fac 48.3 14 0.00029 42.2 2.8 48 868-915 250-298 (327)
122 PF04710 Pellino: Pellino; In 46.1 6.7 0.00015 45.5 0.0 28 883-913 304-337 (416)
123 KOG3842 Adaptor protein Pellin 42.8 22 0.00047 40.4 3.2 52 863-914 337-413 (429)
124 PF10235 Cript: Microtubule-as 42.7 14 0.0003 35.0 1.5 39 867-917 44-82 (90)
125 KOG3113 Uncharacterized conser 40.3 24 0.00052 39.0 3.0 48 866-915 110-158 (293)
126 TIGR00622 ssl1 transcription f 39.6 27 0.00059 34.3 3.0 44 868-911 56-110 (112)
127 PF06906 DUF1272: Protein of u 37.9 48 0.001 29.0 3.8 45 869-916 7-53 (57)
128 KOG4218 Nuclear hormone recept 35.4 15 0.00033 42.0 0.7 48 864-912 12-75 (475)
129 PF00628 PHD: PHD-finger; Int 34.9 14 0.00031 30.0 0.3 43 870-912 2-50 (51)
130 KOG2071 mRNA cleavage and poly 34.2 21 0.00046 43.4 1.6 36 865-900 511-556 (579)
131 PLN02189 cellulose synthase 33.8 33 0.00072 44.4 3.3 49 866-914 33-86 (1040)
132 smart00132 LIM Zinc-binding do 31.2 30 0.00066 25.7 1.5 37 869-914 1-37 (39)
133 PLN02436 cellulose synthase A 30.6 42 0.00092 43.7 3.5 49 866-914 35-88 (1094)
134 PF06844 DUF1244: Protein of u 30.6 28 0.00061 31.3 1.4 11 892-902 12-22 (68)
135 KOG1729 FYVE finger containing 30.5 8.4 0.00018 43.2 -2.3 37 868-904 215-251 (288)
136 PLN02638 cellulose synthase A 29.6 46 0.001 43.4 3.5 49 866-914 16-69 (1079)
137 KOG0955 PHD finger protein BR1 29.1 28 0.00061 45.3 1.6 36 863-898 215-252 (1051)
138 PF02318 FYVE_2: FYVE-type zin 28.9 55 0.0012 31.8 3.2 46 866-912 53-102 (118)
139 COG5109 Uncharacterized conser 28.8 36 0.00078 38.8 2.2 45 867-911 336-383 (396)
140 KOG2113 Predicted RNA binding 28.2 35 0.00076 38.8 1.9 44 865-913 341-385 (394)
141 KOG4185 Predicted E3 ubiquitin 27.8 11 0.00025 41.3 -1.9 48 866-913 206-265 (296)
142 smart00064 FYVE Protein presen 26.1 17 0.00036 31.5 -0.8 37 866-902 9-46 (68)
143 KOG1245 Chromatin remodeling c 25.2 25 0.00055 47.1 0.2 51 863-913 1104-1158(1404)
144 PLN02400 cellulose synthase 25.1 44 0.00095 43.6 2.3 49 866-914 35-88 (1085)
145 KOG3726 Uncharacterized conser 24.2 36 0.00078 42.2 1.2 42 867-911 654-696 (717)
146 KOG1814 Predicted E3 ubiquitin 23.3 43 0.00093 39.4 1.6 36 866-901 367-405 (445)
147 PF14569 zf-UDP: Zinc-binding 23.2 60 0.0013 30.2 2.1 50 865-914 7-61 (80)
148 PF04710 Pellino: Pellino; In 22.6 29 0.00062 40.6 0.0 49 867-915 328-401 (416)
149 PLN02915 cellulose synthase A 22.2 89 0.0019 40.8 4.1 51 864-914 12-67 (1044)
150 PF07191 zinc-ribbons_6: zinc- 22.2 8.4 0.00018 34.9 -3.4 39 868-914 2-40 (70)
151 PF05605 zf-Di19: Drought indu 22.0 56 0.0012 27.4 1.6 37 867-913 2-40 (54)
152 KOG4430 Topoisomerase I-bindin 21.9 29 0.00063 42.1 -0.1 52 864-915 257-309 (553)
153 COG0068 HypF Hydrogenase matur 21.7 38 0.00082 42.3 0.8 47 866-912 100-181 (750)
154 KOG4443 Putative transcription 21.1 46 0.00099 41.2 1.3 45 868-912 19-70 (694)
155 PF04216 FdhE: Protein involve 20.6 22 0.00047 39.4 -1.4 47 866-912 171-219 (290)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.3e-14 Score=155.75 Aligned_cols=49 Identities=45% Similarity=1.145 Sum_probs=45.3
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCcCCCcCC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN-LCPICKTTALP 916 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rkn-TCPICR~~lLp 916 (917)
+.|+||||+|+++|++++|||+|.||..||++||.+.. .||+||+.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 68999999999999999999999999999999999774 59999998753
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.36 E-value=1.7e-13 Score=108.95 Aligned_cols=44 Identities=50% Similarity=1.207 Sum_probs=40.6
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR 911 (917)
+.|+||+++|..++.++.|+|+|+||.+||.+||+.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999999999999999999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.3e-11 Score=132.09 Aligned_cols=53 Identities=32% Similarity=0.819 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccccc-cCCCC---------ceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 862 ESPTDLEPCCICQEE-YTDGD---------DLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 862 ~s~~e~e~C~ICLEe-fe~ge---------~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
+...++..|.||||+ |..+. +.++|||||+||.+|++.|++++.+||+||.++
T Consensus 282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 345667789999999 44331 347899999999999999999999999999985
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.4e-11 Score=129.33 Aligned_cols=50 Identities=40% Similarity=0.995 Sum_probs=47.0
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCcCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP 916 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-rknTCPICR~~lLp 916 (917)
..+|+|||+.|.+.|++++|||.|.||..||.+|+. -++.||+||.++.|
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 367999999999999999999999999999999998 78999999999876
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.09 E-value=6.6e-11 Score=104.52 Aligned_cols=46 Identities=41% Similarity=0.912 Sum_probs=37.1
Q ss_pred CCCCCcccccccCCC----------CceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484 866 DLEPCCICQEEYTDG----------DDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911 (917)
Q Consensus 866 e~e~C~ICLEefe~g----------e~VviLPCgHvFH~~CIkqWL~rknTCPICR 911 (917)
.++.|+||++.|.+. ..+...+|+|.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999432 2355568999999999999999999999998
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.08 E-value=8.9e-11 Score=124.62 Aligned_cols=51 Identities=35% Similarity=0.922 Sum_probs=42.3
Q ss_pred CCCCCCcccccccCCCCc----eEE-eCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 865 TDLEPCCICQEEYTDGDD----LGV-LDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~----Vvi-LPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..+.+|+||++.+.+.+. +.+ ++|+|.||..||.+|++.+.+||+||+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456789999999876531 234 479999999999999999999999998764
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.86 E-value=2.1e-09 Score=110.72 Aligned_cols=48 Identities=33% Similarity=0.673 Sum_probs=40.4
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc----------------CCCCcCcCCCcC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ----------------KNLCPICKTTAL 915 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r----------------knTCPICR~~lL 915 (917)
.++.+|+||++.++++ ++++|||.||+.||.+|+.. +..||+||..+.
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3457899999998776 77899999999999999852 347999999874
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.3e-09 Score=117.03 Aligned_cols=51 Identities=31% Similarity=0.778 Sum_probs=45.3
Q ss_pred CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp 916 (917)
......+|.||||....+ ..+||||+||..||..|+..+..||+||..+-|
T Consensus 235 i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 344567899999998877 688999999999999999999999999998765
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.4e-09 Score=108.42 Aligned_cols=54 Identities=28% Similarity=0.530 Sum_probs=44.8
Q ss_pred CCCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 861 TESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 861 ~~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
....+....|+|||+.|.+.. .+-++|||+||..||+.-|+....||+|++.|.
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 344555678999999998763 245799999999999999999999999998764
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.1e-09 Score=112.66 Aligned_cols=50 Identities=32% Similarity=0.658 Sum_probs=42.5
Q ss_pred CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc---CCCCcCcCCCcC
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ---KNLCPICKTTAL 915 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r---knTCPICR~~lL 915 (917)
.+....+|.||||.-+++ +++.|||.||+.||.+||.. ++.||+||..+-
T Consensus 43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 355667899999998887 78889999999999999984 567999998763
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.76 E-value=6.6e-09 Score=80.00 Aligned_cols=44 Identities=45% Similarity=1.074 Sum_probs=36.7
Q ss_pred CCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCcCCCc
Q 002484 869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTA 914 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-knTCPICR~~l 914 (917)
.|+||++.+. +.+..++|+|.||..|++.|++. ...||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 33455569999999999999997 77899999864
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.74 E-value=4.8e-09 Score=85.74 Aligned_cols=46 Identities=39% Similarity=0.783 Sum_probs=39.3
Q ss_pred CCCCcccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHN-FHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHv-FH~~CIkqWL~rknTCPICR~~lL 915 (917)
+..|.||++...+ +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999998654 578899999 999999999999999999999874
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.7e-09 Score=123.28 Aligned_cols=52 Identities=37% Similarity=0.871 Sum_probs=45.5
Q ss_pred CCCCCCCcccccccCCCCc--eEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDD--LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~--VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
...++.|+||+|++..+.. .++|+|+|+||..|+++||+++.+||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3447789999999998655 688999999999999999999999999998543
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.70 E-value=8.2e-09 Score=80.42 Aligned_cols=39 Identities=41% Similarity=1.020 Sum_probs=33.7
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPIC 910 (917)
|+||++.+.+ .++.++|||.||+.||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999877 35678999999999999999999999998
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.66 E-value=1.7e-08 Score=91.91 Aligned_cols=49 Identities=39% Similarity=0.884 Sum_probs=39.3
Q ss_pred CCCCCcccccccCC--------CC--ceEEeCCCChhcHHHHHHHHhc---CCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTD--------GD--DLGVLDCGHNFHTDCIKLWLMQ---KNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~--------ge--~VviLPCgHvFH~~CIkqWL~r---knTCPICR~~l 914 (917)
.++.|.||...|.. ++ .++.-.|+|.||..||.+||.. +..||+||++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 37789999999872 22 2444589999999999999984 57899999975
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.62 E-value=2.2e-08 Score=104.75 Aligned_cols=51 Identities=33% Similarity=0.787 Sum_probs=39.1
Q ss_pred CCCCCCCcccccccCCC-----CceEEe-CCCChhcHHHHHHHHhcC------CCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDG-----DDLGVL-DCGHNFHTDCIKLWLMQK------NLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~g-----e~VviL-PCgHvFH~~CIkqWL~rk------nTCPICR~~l 914 (917)
...+++|.||||..-++ ...++| +|+|.||..||++|.+.+ ..||+||..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 44567899999986432 123555 799999999999999853 4699999875
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.59 E-value=4.7e-08 Score=82.37 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=40.9
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..|+||++.+.++ ++++|||+|++.||.+|++.+.+||+|++++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999887 77899999999999999999999999998763
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.53 E-value=7.3e-08 Score=77.17 Aligned_cols=44 Identities=34% Similarity=0.801 Sum_probs=39.0
Q ss_pred CCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484 869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~ 912 (917)
.|.||++.|.+.+...+|+|||+||..||+++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966667788899999999999999977788999985
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.50 E-value=6.3e-08 Score=77.27 Aligned_cols=38 Identities=34% Similarity=0.831 Sum_probs=30.6
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCc
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK----NLCPIC 910 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk----nTCPIC 910 (917)
|+||++.|+++ +.|+|||.||+.||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 899999999999999999853 369998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=1.5e-07 Score=69.96 Aligned_cols=38 Identities=55% Similarity=1.193 Sum_probs=33.0
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCc
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPIC 910 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-rknTCPIC 910 (917)
|.||++.. .....++|+|.||..||+.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3457889999999999999998 66779998
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=9.7e-08 Score=108.20 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=42.7
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
.+....|.||++.|..+ ++++|+|.||..||..||..+..||+||..+.
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 34556899999999877 57899999999999999999889999998764
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.43 E-value=9.9e-08 Score=74.46 Aligned_cols=39 Identities=44% Similarity=1.073 Sum_probs=34.2
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCc
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPIC 910 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPIC 910 (917)
|.||++.+.+.. .+++|+|.||.+||++|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988772 4789999999999999999 56679998
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.35 E-value=3.4e-07 Score=82.14 Aligned_cols=42 Identities=43% Similarity=0.803 Sum_probs=32.3
Q ss_pred cccccCCCCceEE--eCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 873 CQEEYTDGDDLGV--LDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 873 CLEefe~ge~Vvi--LPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
|+-....+++..+ -.|.|.||..||.+||..++.||+||++.
T Consensus 37 Cq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 37 CQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 3333334444433 37999999999999999999999999875
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.9e-07 Score=97.43 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=43.1
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHH-HHhcCCC-CcCcCCCcCC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKL-WLMQKNL-CPICKTTALP 916 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkq-WL~rknT-CPICR~~lLp 916 (917)
..+..|.||++..... ..++|||+||..||.. |-+++.. ||+||+.+.|
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 5677899999998776 7889999999999999 9888776 9999998765
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.6e-07 Score=102.28 Aligned_cols=53 Identities=28% Similarity=0.697 Sum_probs=41.5
Q ss_pred CCCCCCCcccccccCCCC---c-----------eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCcCC
Q 002484 864 PTDLEPCCICQEEYTDGD---D-----------LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP 916 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge---~-----------VviLPCgHvFH~~CIkqWL~-rknTCPICR~~lLp 916 (917)
......|+|||.++..-. . ...+||.|+||..|+++|+. .|-.||+||.++.|
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345568999999876211 1 12459999999999999999 66699999999876
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6.6e-07 Score=95.72 Aligned_cols=51 Identities=29% Similarity=0.690 Sum_probs=42.3
Q ss_pred CCCCCCCcccccccCCCC-------ceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGD-------DLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge-------~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~l 914 (917)
..++..|+||-..+...+ ++.+|.|+|+||..||+-|.. +|.+||.||+.+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 345678999988876554 567899999999999999975 688999999765
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.3e-06 Score=100.28 Aligned_cols=47 Identities=32% Similarity=0.556 Sum_probs=39.0
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcC-----CCCcCcCCCcCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK-----NLCPICKTTALP 916 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk-----nTCPICR~~lLp 916 (917)
+..|+||+++...+ ..+.|||+||..||.+++... ..||+|+..|.+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 56799999998776 566799999999999988643 479999987754
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.1e-06 Score=78.30 Aligned_cols=50 Identities=38% Similarity=0.877 Sum_probs=38.0
Q ss_pred CCCCCCcccccccCC--------CCceEEe--CCCChhcHHHHHHHHhc---CCCCcCcCCCc
Q 002484 865 TDLEPCCICQEEYTD--------GDDLGVL--DCGHNFHTDCIKLWLMQ---KNLCPICKTTA 914 (917)
Q Consensus 865 ~e~e~C~ICLEefe~--------ge~VviL--PCgHvFH~~CIkqWL~r---knTCPICR~~l 914 (917)
..++.|.||.-.|.. +|+.-++ .|.|.||..||.+||.. +..||+||++.
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 345589999998862 3332222 69999999999999974 45799999875
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.06 E-value=1.4e-06 Score=95.67 Aligned_cols=47 Identities=36% Similarity=0.692 Sum_probs=42.4
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
....|-||.|.|..+ .++||+|.||.-||+.+|..+..||.|+.++.
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 345699999999988 78899999999999999999999999998764
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.04 E-value=2.1e-06 Score=75.79 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=37.4
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCcCCCcC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTAL 915 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-knTCPICR~~lL 915 (917)
...|+||.+-+.++ ++++|||.|.+.||.+||+. ..+||+|++.+.
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 45799999999998 88999999999999999998 889999988764
No 31
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.03 E-value=5e-06 Score=68.66 Aligned_cols=42 Identities=33% Similarity=0.819 Sum_probs=33.2
Q ss_pred CCcccccccCCCCceEEeCCC-----ChhcHHHHHHHHhc--CCCCcCcC
Q 002484 869 PCCICQEEYTDGDDLGVLDCG-----HNFHTDCIKLWLMQ--KNLCPICK 911 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCg-----HvFH~~CIkqWL~r--knTCPICR 911 (917)
.|.||++ +.+++...++||. |+||..|+++|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4999999 3444455578985 89999999999975 45899995
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.99 E-value=4.1e-06 Score=67.54 Aligned_cols=38 Identities=37% Similarity=0.859 Sum_probs=23.0
Q ss_pred CcccccccCCCCc-eEEeCCCChhcHHHHHHHHhcC----CCCc
Q 002484 870 CCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLMQK----NLCP 908 (917)
Q Consensus 870 C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~rk----nTCP 908 (917)
|+||.| |...+. -++|+|||+|+++||++|++.. -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 766443 4778999999999999999843 3576
No 33
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.6e-06 Score=87.36 Aligned_cols=45 Identities=31% Similarity=0.703 Sum_probs=40.0
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR 911 (917)
..+...|.||++.|..+ ++|+|+|.||..||..++...-.||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 34566799999999998 7889999999999999998666899999
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.96 E-value=3.6e-06 Score=90.92 Aligned_cols=46 Identities=28% Similarity=0.693 Sum_probs=41.2
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
....|-||-+.|..+ ..++|||.||.-||+..|..+..||+||.+.
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 345699999999888 6789999999999999999999999999753
No 35
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.77 E-value=5.8e-06 Score=99.43 Aligned_cols=53 Identities=26% Similarity=0.674 Sum_probs=40.0
Q ss_pred CCCCCCCCcccccccCCCC----ceEEeCCCChhcHHHHHHHHhc--CCCCcCcCCCcC
Q 002484 863 SPTDLEPCCICQEEYTDGD----DLGVLDCGHNFHTDCIKLWLMQ--KNLCPICKTTAL 915 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge----~VviLPCgHvFH~~CIkqWL~r--knTCPICR~~lL 915 (917)
.-.+.++|+||+..+..-| ..++-.|+|.||..|+.+|++. +.+||+||.++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456788999988765211 1134469999999999999984 678999998764
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.8e-05 Score=74.36 Aligned_cols=52 Identities=29% Similarity=0.713 Sum_probs=38.5
Q ss_pred CCCCCCCCcccccccC------------CCCceEE-e-CCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 863 SPTDLEPCCICQEEYT------------DGDDLGV-L-DCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 863 s~~e~e~C~ICLEefe------------~ge~Vvi-L-PCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
-+...+.|+||...+- ..++.++ . .|.|.||..||.+||+.++.||+|.++-
T Consensus 42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4455677888865442 1223333 2 7999999999999999999999998763
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.71 E-value=8.3e-06 Score=71.93 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=23.0
Q ss_pred CCCCcccccccCCCCce---EEe--CCCChhcHHHHHHHHhc----C-------CCCcCcCCCc
Q 002484 867 LEPCCICQEEYTDGDDL---GVL--DCGHNFHTDCIKLWLMQ----K-------NLCPICKTTA 914 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~V---viL--PCgHvFH~~CIkqWL~r----k-------nTCPICR~~l 914 (917)
+..|.||++.+.+.+++ +.- .|++.||..||.+||.. + ..||.|+++|
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 35799999987633322 222 69999999999999972 1 1499999876
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.9e-05 Score=87.90 Aligned_cols=49 Identities=35% Similarity=0.636 Sum_probs=42.3
Q ss_pred CCCCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~lLp 916 (917)
+..++|.|||.+-++. .+|||.| -.|..|.+..--+.+.|||||+++..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 4467899999997665 8999999 58999999988889999999998754
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.58 E-value=1.2e-05 Score=95.51 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=45.3
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp 916 (917)
.....|+||+..+.+.......+|+|+||..||..|-+...+||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3456799999999888766677999999999999999999999999988753
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.52 E-value=3.2e-05 Score=84.19 Aligned_cols=54 Identities=24% Similarity=0.640 Sum_probs=44.1
Q ss_pred CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-----------------------cCCCCcCcCCCcC
Q 002484 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-----------------------QKNLCPICKTTAL 915 (917)
Q Consensus 862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-----------------------rknTCPICR~~lL 915 (917)
+..-....|.|||-.|.+++...+++|-|+||..|+.++|. .+..||+||..|.
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 33445567999999999999999999999999999988772 1236999998764
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=4.6e-05 Score=85.42 Aligned_cols=50 Identities=32% Similarity=0.903 Sum_probs=39.1
Q ss_pred CCCCCCcccccccCCCC----ceEEe-CCCChhcHHHHHHHHh--c-----CCCCcCcCCCc
Q 002484 865 TDLEPCCICQEEYTDGD----DLGVL-DCGHNFHTDCIKLWLM--Q-----KNLCPICKTTA 914 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge----~VviL-PCgHvFH~~CIkqWL~--r-----knTCPICR~~l 914 (917)
..++.|.||||...+.. ..++| +|.|.||..||.+|-. + .+.||+||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 55678999999987653 13455 5999999999999983 4 46899999753
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00014 Score=87.41 Aligned_cols=47 Identities=26% Similarity=0.730 Sum_probs=38.9
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCcCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTALP 916 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-rknTCPICR~~lLp 916 (917)
...|+.|-..+++. +++.|+|+||..||..-+. +...||.|-+.+-+
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 45699999766554 7779999999999999997 67789999887643
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=7.6e-05 Score=63.11 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=36.3
Q ss_pred CCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHh-cCCCCcCcCCCcC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLM-QKNLCPICKTTAL 915 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~-rknTCPICR~~lL 915 (917)
.++|.||+|.-.+. ++..||| -.|++|-.+-++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 37899999986554 4558999 579999766555 7889999998763
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.20 E-value=0.00012 Score=82.24 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=38.2
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCCcCC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTTALP 916 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~lLp 916 (917)
+.|.||-|. .++|++-||||..|..|+..|-. ...+||.||.+|.-
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 469999886 34567889999999999999985 35799999998753
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=5e-05 Score=84.32 Aligned_cols=48 Identities=29% Similarity=0.538 Sum_probs=39.1
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCcCCCcC
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-KNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-knTCPICR~~lL 915 (917)
.+..|.|||+-++.. +.+..|.|.||.+||.+-|+. .+.||.||+.+.
T Consensus 42 ~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 345699999998765 334469999999999999985 678999998764
No 46
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.14 E-value=0.00022 Score=88.57 Aligned_cols=52 Identities=33% Similarity=0.604 Sum_probs=42.6
Q ss_pred CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----------CCcCcCCCc
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN----------LCPICKTTA 914 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rkn----------TCPICR~~l 914 (917)
..+.++.|.||+-+--.......|.|+|+||..|.+.-|+++- .||+|+.+|
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 3456778999988876666778999999999999998777542 699999876
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.00 E-value=0.00016 Score=63.13 Aligned_cols=44 Identities=30% Similarity=0.677 Sum_probs=23.1
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..|.+|.+-++++ +....|.|+||..||.+-+.. .||+|+.++-
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT--B-SSS--B-S
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC--CCCCcCChHH
Confidence 4599999998877 233489999999999886553 4999998763
No 48
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00076 Score=75.02 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
-...++..|+||+..--.. +..||+|.-|++||.+.|+..+.|=.||+++.
T Consensus 417 lp~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3446788999998764333 66799999999999999999999999998764
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.81 E-value=0.00059 Score=77.92 Aligned_cols=50 Identities=28% Similarity=0.756 Sum_probs=38.6
Q ss_pred CCCCCCCcccccccCCCCc-eEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..+..+|+||||.+..... +....|.|.||-.|+.+|.. .+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 3456689999999876532 34457999999999999953 57999997544
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00056 Score=78.25 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=42.8
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..+..|+||+.-+..+ +.+||||.||..||.+-|.++..||.||.++.
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 4567899999998887 77899999999999998888999999998875
No 51
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00043 Score=75.47 Aligned_cols=42 Identities=38% Similarity=0.748 Sum_probs=33.9
Q ss_pred CCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~lL 915 (917)
...|.|||+.-.+ .+.|+||| +-|.+|-+.. +.|||||+.++
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6789999998554 48899999 7799997663 48999998654
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.43 E-value=0.0015 Score=55.88 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=29.0
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--KNLCPI 909 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--knTCPI 909 (917)
.-...|+|.+..|+++ ++...|+|+|-++.|.+||+. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3446799999999876 555689999999999999943 456999
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.43 E-value=0.0013 Score=75.20 Aligned_cols=49 Identities=27% Similarity=0.569 Sum_probs=42.6
Q ss_pred CCCCCCCcccccccCCCCceEE-eCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~Vvi-LPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
.+++..|+||+..+.++ .. +.|||.||..||.+|+..+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45567899999999888 34 589999999999999999999999988764
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.39 E-value=0.00082 Score=74.48 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=40.7
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
......|.+|-..|.+.. .+..|-|.||+.||.+.|...+.||+|...+
T Consensus 12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 345567999999888763 3457999999999999999999999997644
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0032 Score=68.47 Aligned_cols=52 Identities=27% Similarity=0.488 Sum_probs=41.0
Q ss_pred CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCCcCC
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTTALP 916 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~lLp 916 (917)
....+.+|++|.+.-..+ ....+|+|+||+.||..-+. ..-+||.|-.++.+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 445677899999987666 35568999999999998766 34689999887653
No 56
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0026 Score=72.29 Aligned_cols=47 Identities=34% Similarity=0.609 Sum_probs=38.5
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--------CCCCcCcCCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--------KNLCPICKTT 913 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--------knTCPICR~~ 913 (917)
...|+||+++..-.+.++.|||+|+||+.|++.++.. .-.||-|+-.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3469999999887788889999999999999999862 2358877643
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.27 E-value=0.0016 Score=67.90 Aligned_cols=43 Identities=28% Similarity=0.669 Sum_probs=38.8
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT 913 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~ 913 (917)
..|.||.++|+.+ +++.|||.||..|.-+-++....|-+|-+.
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 4799999999988 788999999999999988888999999654
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.0015 Score=73.47 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=38.0
Q ss_pred CCCCcccccccCCCC-ceEEeCCCChhcHHHHHHHHhcC--CCCcCcCC
Q 002484 867 LEPCCICQEEYTDGD-DLGVLDCGHNFHTDCIKLWLMQK--NLCPICKT 912 (917)
Q Consensus 867 ~e~C~ICLEefe~ge-~VviLPCgHvFH~~CIkqWL~rk--nTCPICR~ 912 (917)
+.-|..|-|.|...+ .+..|||.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345999999887544 57788999999999999999764 47999983
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.15 E-value=0.0023 Score=74.27 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=39.1
Q ss_pred CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh-----cCCCCcCcCCCc
Q 002484 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM-----QKNLCPICKTTA 914 (917)
Q Consensus 862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~-----rknTCPICR~~l 914 (917)
+...+...|.+|-+.-++. ....|.|+||+-||++++. ..-+||+|-..+
T Consensus 531 ~enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3345566899999886655 6778999999999999986 346899996544
No 60
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0016 Score=66.04 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=29.3
Q ss_pred CCCCCCCCCCcccccccCCCCceEEeCCCChhcH
Q 002484 861 TESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHT 894 (917)
Q Consensus 861 ~~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~ 894 (917)
+....+.-+|.||||+++.++.+.+|||-++||+
T Consensus 171 DVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 171 DVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred chhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3344556689999999999999999999999996
No 61
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0095 Score=63.25 Aligned_cols=49 Identities=29% Similarity=0.639 Sum_probs=40.5
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--------CCCCcCcCCCcCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--------KNLCPICKTTALP 916 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--------knTCPICR~~lLp 916 (917)
...|..|--.+..+|. +.|-|-|+||.+|+.+|-.. ...||.|.++|.|
T Consensus 50 ~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3469999998888854 47789999999999999763 2369999999876
No 62
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0033 Score=68.91 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
.+.|-||.+.|..+ +++.|+|.||..|..+-++....|.+|-+..
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 34699999999998 7889999999999999999989999997754
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.0085 Score=64.37 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=44.7
Q ss_pred CCCCCcccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 866 DLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviL-PCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
....|+||.+.+...-.+.+| +|||+|+++|+++.+.....||+|-+++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 456799999999998888888 89999999999999999999999987753
No 64
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.47 E-value=0.014 Score=59.34 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=35.6
Q ss_pred CCCCCCCCcccccccCCCCceEEeCCCC-----hhcHHHHHHHHhc--CCCCcCcCCCc
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVLDCGH-----NFHTDCIKLWLMQ--KNLCPICKTTA 914 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviLPCgH-----vFH~~CIkqWL~r--knTCPICR~~l 914 (917)
....+..|-||.++... . .-||.. .-|..|+.+|+.. ...|++|+++.
T Consensus 4 ~s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 4 VSLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred cCCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 34556789999988542 1 247654 6699999999985 45799998864
No 65
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.45 E-value=0.0083 Score=59.48 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=30.3
Q ss_pred CCCCcccccccCCCCceEEeCCC------ChhcHHHHHHHHhc
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCG------HNFHTDCIKLWLMQ 903 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCg------HvFH~~CIkqWL~r 903 (917)
..+|.||++.+...+-++.++|+ |.||.+|+++|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 34699999999985567777886 89999999999443
No 66
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.014 Score=71.21 Aligned_cols=42 Identities=24% Similarity=0.729 Sum_probs=34.3
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTT 913 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~ 913 (917)
...|.+|--.+..+ ++-..|||.||.+|+. .....||.|+.+
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 46799998887766 4566899999999999 556689999864
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.24 E-value=0.014 Score=65.21 Aligned_cols=53 Identities=25% Similarity=0.559 Sum_probs=42.2
Q ss_pred ccCCCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHH--HhcCCCCcCcCCCc
Q 002484 859 TETESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLW--LMQKNLCPICKTTA 914 (917)
Q Consensus 859 ~e~~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqW--L~rknTCPICR~~l 914 (917)
..++.+++...|.||-+.+.- +.++||+|..|-.|..+. |-.++.||+||++-
T Consensus 53 SaddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345667778899999988654 367899999999998654 56889999999863
No 68
>PHA03096 p28-like protein; Provisional
Probab=95.24 E-value=0.0097 Score=65.71 Aligned_cols=45 Identities=31% Similarity=0.653 Sum_probs=33.4
Q ss_pred CCCcccccccCCCC----ceEEe-CCCChhcHHHHHHHHhc---CCCCcCcCC
Q 002484 868 EPCCICQEEYTDGD----DLGVL-DCGHNFHTDCIKLWLMQ---KNLCPICKT 912 (917)
Q Consensus 868 e~C~ICLEefe~ge----~VviL-PCgHvFH~~CIkqWL~r---knTCPICR~ 912 (917)
..|.||||...... .-++| .|.|.||..||+.|-.. +.+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999876532 34566 59999999999999874 345555543
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.20 E-value=0.0067 Score=55.94 Aligned_cols=33 Identities=33% Similarity=0.764 Sum_probs=27.8
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHH
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIK 898 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIk 898 (917)
.+...|.||-..+.. ....+.||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 445679999999987 467778999999999986
No 70
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.01 Score=66.74 Aligned_cols=43 Identities=23% Similarity=0.600 Sum_probs=31.5
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
-.+.|.||+++.++. +-+||||.-| |+.--... ..||+||+.|
T Consensus 304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs~~l-~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCSKHL-PQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccce---eeecCCcEEE--chHHHhhC-CCCchhHHHH
Confidence 345799999997764 7889999866 65554332 3499999865
No 71
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.86 E-value=0.026 Score=61.29 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=40.6
Q ss_pred CCCCCCCcccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviL-PCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
......|+|+..+|......+.| +|||+|...||++-- ....||+|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 45567899999999665555555 999999999999973 3567999988764
No 72
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=0.01 Score=72.86 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=29.6
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHH
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWL 901 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL 901 (917)
.+..+.|.||...+-.. ...+.+|||.||++||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 45567899999887655 45577999999999998765
No 73
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.63 E-value=0.017 Score=47.56 Aligned_cols=40 Identities=28% Similarity=0.747 Sum_probs=27.6
Q ss_pred CcccccccCCCCceEEeCCCC-----hhcHHHHHHHHh--cCCCCcCc
Q 002484 870 CCICQEEYTDGDDLGVLDCGH-----NFHTDCIKLWLM--QKNLCPIC 910 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgH-----vFH~~CIkqWL~--rknTCPIC 910 (917)
|-||+++..+.+ ..+.||.- +.|..|+.+|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999977665 33557653 679999999998 45679998
No 74
>PHA02862 5L protein; Provisional
Probab=94.59 E-value=0.024 Score=56.84 Aligned_cols=47 Identities=28% Similarity=0.740 Sum_probs=31.5
Q ss_pred CCCcccccccCCCCce-EEeCCCChhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484 868 EPCCICQEEYTDGDDL-GVLDCGHNFHTDCIKLWLM--QKNLCPICKTTA 914 (917)
Q Consensus 868 e~C~ICLEefe~ge~V-viLPCgHvFH~~CIkqWL~--rknTCPICR~~l 914 (917)
+.|-||.++.++.... ...---.+-|.+|+.+|+. ++..|++||.+.
T Consensus 3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 5799999985433000 0000014789999999998 567899999864
No 75
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.36 E-value=0.028 Score=68.81 Aligned_cols=46 Identities=33% Similarity=0.693 Sum_probs=34.9
Q ss_pred CCCCCcccccccCCCCceEE-eCCCChhcHHHHHHHHhcC-------CCCcCcC
Q 002484 866 DLEPCCICQEEYTDGDDLGV-LDCGHNFHTDCIKLWLMQK-------NLCPICK 911 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~Vvi-LPCgHvFH~~CIkqWL~rk-------nTCPICR 911 (917)
...+|.||++.+.....+-- ..|-|+||..||++|-+.. -.||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 34569999999987764422 2488999999999998631 2599997
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.09 E-value=0.032 Score=46.46 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=22.5
Q ss_pred CcccccccCCCCceEEe--CCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 870 CCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 870 C~ICLEefe~ge~VviL--PCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
|++|.+++...+ ...+ +|++..|+.|..+-++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 2334 6899999999888886 578899999864
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.0036 Score=70.67 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=44.1
Q ss_pred CCCCCcccccccCCC-CceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 866 DLEPCCICQEEYTDG-DDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~C~ICLEefe~g-e~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
-...|.||.+.|+.. +++..+-|||.+|.+||.+||..+..||.|+.++.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 346799999999876 67778899999999999999999999999998763
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.71 E-value=0.038 Score=60.88 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=33.5
Q ss_pred CCCcccccccCCCCceEEeC-CCChhcHHHHHHHHh-cCCCCcCcCC
Q 002484 868 EPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLM-QKNLCPICKT 912 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLP-CgHvFH~~CIkqWL~-rknTCPICR~ 912 (917)
..|+.|-.-+... ..++ |+|.||..||..-|. ....||.|.+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6799998887766 3444 899999999998776 5678999944
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.05 Score=60.71 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=39.2
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
..+...|+||+.....+. ++.--|-+||+.||.+.+...+.||+--.++
T Consensus 297 ~~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345678999999987762 3334699999999999999999999976554
No 80
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.03 Score=62.01 Aligned_cols=42 Identities=21% Similarity=0.559 Sum_probs=28.8
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
|.-|--.+..- -+.+||+|+||++|... ...+.||.|-..+.
T Consensus 93 Cd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 93 CDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred ecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 55564444332 13459999999999764 45779999976654
No 81
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.04 E-value=0.041 Score=67.27 Aligned_cols=43 Identities=33% Similarity=0.817 Sum_probs=35.2
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcCcCCCc
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ--KNLCPICKTTA 914 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r--knTCPICR~~l 914 (917)
..|.||++ .+...+..|+|.||..|+.+-+.. ...||+||..+
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 67999999 345678899999999999998874 33599998643
No 82
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.02 E-value=0.14 Score=58.46 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=32.8
Q ss_pred CCCCCCCCcccccccCCCCc-------------------eEEeCCCChhcHHHHHHHHhc-------------CCCCcCc
Q 002484 863 SPTDLEPCCICQEEYTDGDD-------------------LGVLDCGHNFHTDCIKLWLMQ-------------KNLCPIC 910 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~-------------------VviLPCgHvFH~~CIkqWL~r-------------knTCPIC 910 (917)
...+.+.|.-||..-.+-+. ...--|.-.+|.+|+-+|+.. +-.||+|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 44677788889886432100 001123346799999999852 3479999
Q ss_pred CCCc
Q 002484 911 KTTA 914 (917)
Q Consensus 911 R~~l 914 (917)
|+.+
T Consensus 347 Ra~F 350 (358)
T PF10272_consen 347 RAKF 350 (358)
T ss_pred cccc
Confidence 9874
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.061 Score=55.62 Aligned_cols=51 Identities=31% Similarity=0.732 Sum_probs=35.8
Q ss_pred CCCCCCCcccccccCCCCc----eEEeCCCChhcHHHHHHHHhc-----C------CCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGDD----LGVLDCGHNFHTDCIKLWLMQ-----K------NLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~----VviLPCgHvFH~~CIkqWL~r-----k------nTCPICR~~l 914 (917)
.++...|.||+..--++.. .--..||.-||.-|+..||+. + ..||.|.+++
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 3444568899765443321 223479999999999999972 1 3699998876
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.04 E-value=0.15 Score=57.15 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=33.9
Q ss_pred CCCCCCCcccccccCCCCc-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
.++++-|+.|+|++...|+ ..-.+||-..|.-|...--+ ....||.||+..
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 3444559999999987664 33457897666666433222 456899999754
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.00 E-value=0.1 Score=44.71 Aligned_cols=46 Identities=35% Similarity=0.621 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp 916 (917)
....|..|...-..+ .+++|+|+.+..|..- ++-+-||+|-+++..
T Consensus 6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 345687787764444 6889999999999554 466789999887753
No 86
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.95 E-value=0.1 Score=56.86 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=36.5
Q ss_pred CCCCCcccccccCCCCc-eEEeCCC-----ChhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTDGDD-LGVLDCG-----HNFHTDCIKLWLM--QKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~-VviLPCg-----HvFH~~CIkqWL~--rknTCPICR~~l 914 (917)
+...|-||.++...... ..+.||. +..|+.|+.+|+. .+..|.+|+...
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 35679999998765432 3455764 5689999999998 556799998754
No 87
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.90 E-value=0.13 Score=57.34 Aligned_cols=45 Identities=27% Similarity=0.616 Sum_probs=37.0
Q ss_pred CCCCCCCcccccccCCCCceEEeCC--CChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDC--GHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPC--gHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..+..+|+||.+.+..+ ++.| ||.-|..|-. +..+.||.||.++-
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34556799999999987 7788 7999999976 45788999998874
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.40 E-value=0.079 Score=67.53 Aligned_cols=45 Identities=36% Similarity=0.833 Sum_probs=38.4
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~ 912 (917)
+...|.||++.+..-. .+..|||.||..|+..|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 3447999999988321 57789999999999999999999999974
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.21 E-value=0.15 Score=56.36 Aligned_cols=44 Identities=39% Similarity=0.826 Sum_probs=37.8
Q ss_pred CCcccccccCCCC-ceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484 869 PCCICQEEYTDGD-DLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912 (917)
Q Consensus 869 ~C~ICLEefe~ge-~VviLPCgHvFH~~CIkqWL~rknTCPICR~ 912 (917)
.|+||.|.+.... .+..++|||.-|..|..+.....-+||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3999999877655 3567899999999999999887899999987
No 90
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.19 E-value=0.25 Score=60.47 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=37.5
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCC-----hhcHHHHHHHHh--cCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGH-----NFHTDCIKLWLM--QKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgH-----vFH~~CIkqWL~--rknTCPICR~~l 914 (917)
.+++..|.||..+-..++.+ .-||++ ..|.+|+.+|+. .++.|-+|+.++
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 34557899998876665443 236764 689999999998 456799998865
No 91
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.46 E-value=0.21 Score=54.45 Aligned_cols=52 Identities=27% Similarity=0.527 Sum_probs=36.8
Q ss_pred CCCCCCCCcccccccCCCCce-EEeCCC-----ChhcHHHHHHHHhcCC--------CCcCcCCCc
Q 002484 863 SPTDLEPCCICQEEYTDGDDL-GVLDCG-----HNFHTDCIKLWLMQKN--------LCPICKTTA 914 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~V-viLPCg-----HvFH~~CIkqWL~rkn--------TCPICR~~l 914 (917)
..+.+..|-||+..=++.-.- -+-||. |..|..||..|+.+|. +||-|+++.
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 345556788999875554221 123663 8999999999998654 599999874
No 92
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.07 E-value=0.18 Score=40.94 Aligned_cols=41 Identities=34% Similarity=0.826 Sum_probs=23.4
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHhcCC--CCcCc
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKN--LCPIC 910 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rkn--TCPIC 910 (917)
|.+|.+-...+..-....|.=.+|..|++.+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877763222224888999999999998655 79988
No 93
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.55 E-value=0.17 Score=42.21 Aligned_cols=42 Identities=29% Similarity=0.743 Sum_probs=26.1
Q ss_pred CCcccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 869 PCCICQEEYTDGDDLGVLDCG-HNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCg-HvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
.|.-|.-+ +. ....|. |+.|..|+...|.+...||+|++++.
T Consensus 4 nCKsCWf~--~k---~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFA--NK---GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S----S---SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhhc--CC---CeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 35556543 22 356786 99999999999999999999998763
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=0.26 Score=52.42 Aligned_cols=39 Identities=28% Similarity=0.672 Sum_probs=29.3
Q ss_pred CcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 870 CCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~lL 915 (917)
|.+|-+. +..|..|||.| .+|..|-.. ..+||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888665 44467789998 789999655 456999987653
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.82 E-value=0.37 Score=58.94 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=36.5
Q ss_pred CCCCCCcccccccCCCCc-eEEeC---CCChhcHHHHHHHHhc------CCCCcCcCCCc
Q 002484 865 TDLEPCCICQEEYTDGDD-LGVLD---CGHNFHTDCIKLWLMQ------KNLCPICKTTA 914 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~-VviLP---CgHvFH~~CIkqWL~r------knTCPICR~~l 914 (917)
.+.+.|.||.-++..+++ ..+++ |+|-||..||..|+.+ +-.|++|+..|
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 345678888888876432 34444 9999999999999863 34689997654
No 96
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.71 E-value=0.42 Score=57.55 Aligned_cols=43 Identities=23% Similarity=0.590 Sum_probs=28.8
Q ss_pred CCCCCCcccccc-----cCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484 865 TDLEPCCICQEE-----YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910 (917)
Q Consensus 865 ~e~e~C~ICLEe-----fe~ge~VviLPCgHvFH~~CIkqWL~rknTCPIC 910 (917)
.....|.||... |+.....+...|+++||.+|++. ....||.|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 445678899542 33333345668999999999554 34459999
No 97
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.16 E-value=0.68 Score=53.40 Aligned_cols=41 Identities=39% Similarity=0.714 Sum_probs=30.4
Q ss_pred CCCCCCCcccccccCCC-CceEEeCCCChhcHHHHHHHHhcC
Q 002484 864 PTDLEPCCICQEEYTDG-DDLGVLDCGHNFHTDCIKLWLMQK 904 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~g-e~VviLPCgHvFH~~CIkqWL~rk 904 (917)
......|.||+.++... +...++.|+|.||.+|+++.+..+
T Consensus 143 ~~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 143 KLPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 33467899999555444 333356899999999999999854
No 98
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.07 E-value=0.41 Score=58.35 Aligned_cols=26 Identities=35% Similarity=0.777 Sum_probs=23.5
Q ss_pred EEeCCCChhcHHHHHHHHhcCCCCcC
Q 002484 884 GVLDCGHNFHTDCIKLWLMQKNLCPI 909 (917)
Q Consensus 884 viLPCgHvFH~~CIkqWL~rknTCPI 909 (917)
.+..|+|+-|..|.+.|+.....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 45689999999999999999999985
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.20 E-value=0.34 Score=59.11 Aligned_cols=44 Identities=30% Similarity=0.683 Sum_probs=36.4
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcC---CCCcCcCCCc
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK---NLCPICKTTA 914 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk---nTCPICR~~l 914 (917)
.+|.||++.|.++ ..+.|-|.||..|+..-|..+ ..||+|+..+
T Consensus 22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 4699999999988 678999999999998776644 4799998543
No 100
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.35 E-value=1.7 Score=43.47 Aligned_cols=50 Identities=28% Similarity=0.555 Sum_probs=37.2
Q ss_pred CCCCCcccccccCCCCceEEeC-CCChhcHHHHHHHHh---cCCCCcCcCCCcC
Q 002484 866 DLEPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLM---QKNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLP-CgHvFH~~CIkqWL~---rknTCPICR~~lL 915 (917)
...+|-||.|.-.++.-++--. ||-..|..|-...++ ....||+||+.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 6678999999877664333222 888899998877655 4678999998764
No 101
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.23 E-value=1.7 Score=37.41 Aligned_cols=43 Identities=35% Similarity=0.810 Sum_probs=32.2
Q ss_pred CCCCCcccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcC--cCC
Q 002484 866 DLEPCCICQEEYTDGDDLGVL-DCGHNFHTDCIKLWLMQKNLCPI--CKT 912 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviL-PCgHvFH~~CIkqWL~rknTCPI--CR~ 912 (917)
....|.+|-+.|++++++++- .|+=.||++|..+ ...|-+ |..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~ 49 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGT 49 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCC
Confidence 345799999999977777766 5999999999544 445544 544
No 102
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.80 E-value=1.7 Score=48.44 Aligned_cols=27 Identities=19% Similarity=0.645 Sum_probs=21.5
Q ss_pred CCChhcHHHHHHHHh-------------cCCCCcCcCCCc
Q 002484 888 CGHNFHTDCIKLWLM-------------QKNLCPICKTTA 914 (917)
Q Consensus 888 CgHvFH~~CIkqWL~-------------rknTCPICR~~l 914 (917)
|.-.+|..|+.+|+. .+-+||+||+.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 556889999999884 455899999864
No 103
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.85 E-value=1.1 Score=48.56 Aligned_cols=46 Identities=22% Similarity=0.581 Sum_probs=34.4
Q ss_pred CCCCCcccccccCCCCceEEe--C-CCChhcHHHHHHHHhcC-CCCc--CcC
Q 002484 866 DLEPCCICQEEYTDGDDLGVL--D-CGHNFHTDCIKLWLMQK-NLCP--ICK 911 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviL--P-CgHvFH~~CIkqWL~rk-nTCP--ICR 911 (917)
.+..|+||..+.--.-.++.| | |-|..|..|+++-+... ..|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 455799998774433345554 5 99999999999999864 5799 674
No 104
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.46 E-value=1.1 Score=55.31 Aligned_cols=44 Identities=30% Similarity=0.658 Sum_probs=33.7
Q ss_pred CCCCCcccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484 866 DLEPCCICQEEYTDG----DDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910 (917)
Q Consensus 866 e~e~C~ICLEefe~g----e~VviLPCgHvFH~~CIkqWL~rknTCPIC 910 (917)
.+..|+-|.+..-.. +.++++.|+|.||+.|+.--..+.+ |-+|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 345799999886532 4578899999999999988766555 6666
No 105
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.75 E-value=2.7 Score=49.23 Aligned_cols=37 Identities=32% Similarity=0.626 Sum_probs=31.4
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ 903 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r 903 (917)
.....|-||.+.+.. .+..+.|+|.||..|+...|..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 445679999999876 5677899999999999999974
No 106
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=69.78 E-value=2.3 Score=46.92 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCceEEe----CCCChhcHHHHHHHHh---------cCCCCcCcCCCc
Q 002484 868 EPCCICQEEYTDGDDLGVL----DCGHNFHTDCIKLWLM---------QKNLCPICKTTA 914 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviL----PCgHvFH~~CIkqWL~---------rknTCPICR~~l 914 (917)
..|-||.++|.+.+..+.+ .|.-++|..|+..-+. ....||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5799999999655544433 4888999999998443 245799998743
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.71 E-value=4.3 Score=46.99 Aligned_cols=42 Identities=24% Similarity=0.550 Sum_probs=30.9
Q ss_pred CCCcccccccCCCCc---eEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484 868 EPCCICQEEYTDGDD---LGVLDCGHNFHTDCIKLWLMQKNLCPIC 910 (917)
Q Consensus 868 e~C~ICLEefe~ge~---VviLPCgHvFH~~CIkqWL~rknTCPIC 910 (917)
..|++|.-.++..+- +.. .|||.||+.|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCCccccCc
Confidence 358888776654443 233 499999999999999888877655
No 108
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.81 E-value=4 Score=47.23 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=38.8
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcC---CCCcCcCCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK---NLCPICKTT 913 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk---nTCPICR~~ 913 (917)
...|+|=.+.-.+......|.|||+.+++-|.+..+.. ..||.|=..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 35699988888888888999999999999999987743 469999544
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.45 E-value=1.9 Score=51.80 Aligned_cols=44 Identities=30% Similarity=0.837 Sum_probs=36.1
Q ss_pred CCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
....+.|.||+++. ..++.+|. |..|+.+|+..+..||+|.+.+
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence 34456799999998 34667888 8999999999999999997653
No 110
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=68.06 E-value=2.8 Score=35.10 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCcccccccCCCCceEEeCCCChhcHHHHHHHHhc-----CCCCcCcCCC
Q 002484 869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ-----KNLCPICKTT 913 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r-----knTCPICR~~ 913 (917)
.|+|....+..+ ++-..|.|.-|.+ ++.||.. .-.||+|.++
T Consensus 4 ~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 588888888765 4445799986544 5566652 2369999864
No 111
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.99 E-value=2.3 Score=51.53 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=29.3
Q ss_pred CCCcccccccCCCCc-eEEeCCCChhcHHHHHHHHhcCCCCc
Q 002484 868 EPCCICQEEYTDGDD-LGVLDCGHNFHTDCIKLWLMQKNLCP 908 (917)
Q Consensus 868 e~C~ICLEefe~ge~-VviLPCgHvFH~~CIkqWL~rknTCP 908 (917)
..|.||+..|..... -+-|-|||+.|+.|+..-. +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 459999888875542 3567899999999998754 44666
No 112
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=3.1 Score=46.21 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCcccccccCCCCceEEeC-CCChhcHHHHHHHHhcCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLMQKN 905 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLP-CgHvFH~~CIkqWL~rkn 905 (917)
...|.+|.|.+++...|.+-. =.|+||..|-++-++++.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 356999999999874332211 269999999999998653
No 113
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=61.32 E-value=5.9 Score=44.92 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=37.2
Q ss_pred CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912 (917)
Q Consensus 862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~ 912 (917)
........|-.|.++.......+.-.|+++||.+|=.--=..-..||-|..
T Consensus 325 ~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 325 TEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred cccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 333455569999888888777777789999999995433334457999964
No 114
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.16 E-value=5.2 Score=43.82 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM 902 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~ 902 (917)
..-+.|+.||..+.++ ++.+=||+|+++||.+.+.
T Consensus 41 K~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 3445699999999998 7889999999999999875
No 115
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.65 E-value=4.7 Score=43.28 Aligned_cols=43 Identities=28% Similarity=0.863 Sum_probs=34.8
Q ss_pred CCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCc
Q 002484 866 DLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPIC 910 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPIC 910 (917)
....|.+|.+-.-.+ +++-.|+-.||..||.+.+.+...||.|
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 446799998775544 2344688899999999999999999999
No 116
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=58.35 E-value=6.8 Score=41.49 Aligned_cols=42 Identities=26% Similarity=0.668 Sum_probs=29.1
Q ss_pred CCCCCcccccc-----cCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484 866 DLEPCCICQEE-----YTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKT 912 (917)
Q Consensus 866 e~e~C~ICLEe-----fe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~ 912 (917)
....|-||-++ |+....+..-.|+-+||+.|.. +..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45679999753 3333333445799999999976 267999943
No 117
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.07 E-value=4 Score=45.76 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=41.4
Q ss_pred CCCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484 862 ESPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 862 ~s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLp 916 (917)
........|-||...+...+. .--|.|.|++.|.+.|....+.||.||..+-+
T Consensus 100 ~~~~~~~~~~~~~g~l~vpt~--~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 100 GFQQDHDICYICYGKLTVPTR--IQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cccCCccceeeeeeeEEeccc--ccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 344566789999888776531 11499999999999999999999999876543
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.02 E-value=9.6 Score=47.34 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=28.6
Q ss_pred CCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcC
Q 002484 869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPI 909 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPI 909 (917)
.|++|-..+..- .+-.--|+|.-|..|+++|+....-||.
T Consensus 781 ~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeeee-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 577775554321 1222259999999999999998888876
No 120
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=48.53 E-value=19 Score=44.52 Aligned_cols=42 Identities=24% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHH-HHh----cC--CCCcCcCCCc
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKL-WLM----QK--NLCPICKTTA 914 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkq-WL~----rk--nTCPICR~~l 914 (917)
..|+||.-.+..+ ++-..|+|+ .|.+. |+. ++ ..||+|.+.+
T Consensus 307 L~CPl~~~Rm~~P--~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 307 LNCPLSKMRMSLP--ARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred ecCCcccceeecC--Ccccccccc---eecchhhhHHhccCCCeeeCccCCccc
Confidence 3588776554333 123344443 56544 332 12 2599998765
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=48.28 E-value=14 Score=42.18 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=36.7
Q ss_pred CCCcccccccCCCCce-EEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 868 EPCCICQEEYTDGDDL-GVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 868 e~C~ICLEefe~ge~V-viLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
..|+||.+.....+.. .-.+|++.-|..|+..-......||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 5799999987444322 22368888888888888888999999998764
No 122
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=46.08 E-value=6.7 Score=45.52 Aligned_cols=28 Identities=29% Similarity=0.744 Sum_probs=0.0
Q ss_pred eEEeCCCChhcHHHHHHHHh------cCCCCcCcCCC
Q 002484 883 LGVLDCGHNFHTDCIKLWLM------QKNLCPICKTT 913 (917)
Q Consensus 883 VviLPCgHvFH~~CIkqWL~------rknTCPICR~~ 913 (917)
-+.|.|||++.+. .|-. ...+||+||+.
T Consensus 304 ~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4678999988754 5654 24579999974
No 123
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.77 E-value=22 Score=40.42 Aligned_cols=52 Identities=25% Similarity=0.550 Sum_probs=34.3
Q ss_pred CCCCCCCCcccccccC--------------C-CCc-eEEeCCCChhcHHHHHHHHhc---------CCCCcCcCCCc
Q 002484 863 SPTDLEPCCICQEEYT--------------D-GDD-LGVLDCGHNFHTDCIKLWLMQ---------KNLCPICKTTA 914 (917)
Q Consensus 863 s~~e~e~C~ICLEefe--------------~-ge~-VviLPCgHvFH~~CIkqWL~r---------knTCPICR~~l 914 (917)
....+.+|++|+..-. + +-. -.--||||+--.+-.+-|-+. +..||.|-+.+
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 3344678999987522 0 000 112389999988999999763 34699997654
No 124
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=42.75 E-value=14 Score=34.99 Aligned_cols=39 Identities=26% Similarity=0.632 Sum_probs=30.1
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCcCCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTALPT 917 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~lLpT 917 (917)
...|.||-..+.. =+|.||..|..+ +..|.||-+.|+.|
T Consensus 44 ~~~C~~CK~~v~q--------~g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQ--------PGAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred Ccccccccccccc--------CCCccChhhhcc----cCcccccCCeeccc
Confidence 4579999776544 368899999765 88999998888654
No 125
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.31 E-value=24 Score=39.04 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=34.1
Q ss_pred CCCCCcccccccCCCCce-EEeCCCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 866 DLEPCCICQEEYTDGDDL-GVLDCGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~V-viLPCgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
....|+|---++...-.. ....|||+|-..-+++. ....|++|.+.+-
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 345688876666554443 34489999999888774 3678999987653
No 126
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.61 E-value=27 Score=34.28 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=33.3
Q ss_pred CCCcccccccCCCC-----------ceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484 868 EPCCICQEEYTDGD-----------DLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911 (917)
Q Consensus 868 e~C~ICLEefe~ge-----------~VviLPCgHvFH~~CIkqWL~rknTCPICR 911 (917)
..|--|+..|.... ......|+++||.+|=.-+-+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886531 122347999999999877777777899995
No 127
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.86 E-value=48 Score=29.04 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=31.9
Q ss_pred CCcccccccCCCCceEEeCCC--ChhcHHHHHHHHhcCCCCcCcCCCcCC
Q 002484 869 PCCICQEEYTDGDDLGVLDCG--HNFHTDCIKLWLMQKNLCPICKTTALP 916 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCg--HvFH~~CIkqWL~rknTCPICR~~lLp 916 (917)
.|-.|-.++.....- ..-|. ..||.+|.+.-| +..||-|--.+++
T Consensus 7 nCE~C~~dLp~~s~~-A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPE-AYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCc-ceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 477787777655411 11243 369999999977 7899999887764
No 128
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=35.42 E-value=15 Score=42.00 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=28.4
Q ss_pred CCCCCCCcccccccCCCCceEEeC---CCChh--------cHHHHHHHH-----hcCCCCcCcCC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLD---CGHNF--------HTDCIKLWL-----MQKNLCPICKT 912 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLP---CgHvF--------H~~CIkqWL-----~rknTCPICR~ 912 (917)
...++.|++|-+...-- ..+.|. |+-.| |+.|+..-- ..++.||.||.
T Consensus 12 edl~ElCPVCGDkVSGY-HYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccccCccccc-eeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 34556799998875432 334554 55555 445554321 24567999985
No 129
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=34.86 E-value=14 Score=29.97 Aligned_cols=43 Identities=26% Similarity=0.648 Sum_probs=29.3
Q ss_pred CcccccccCCCCceEEeCCCChhcHHHHHHHHh------cCCCCcCcCC
Q 002484 870 CCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM------QKNLCPICKT 912 (917)
Q Consensus 870 C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~------rknTCPICR~ 912 (917)
|.||......++.+.--.|.-.||..|+..=+. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 889999444443333347999999999976543 2457888853
No 130
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=34.17 E-value=21 Score=43.41 Aligned_cols=36 Identities=31% Similarity=0.614 Sum_probs=25.5
Q ss_pred CCCCCCcccccccCC----CCc------eEEeCCCChhcHHHHHHH
Q 002484 865 TDLEPCCICQEEYTD----GDD------LGVLDCGHNFHTDCIKLW 900 (917)
Q Consensus 865 ~e~e~C~ICLEefe~----ge~------VviLPCgHvFH~~CIkqW 900 (917)
+....|.||.|.|+. .++ .+.+.-|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 667789999999873 111 233446889999998654
No 131
>PLN02189 cellulose synthase
Probab=33.78 E-value=33 Score=44.45 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=33.6
Q ss_pred CCCCCcccccccCC---CCc-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTD---GDD-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~---ge~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
....|.||-+++.. ++. +.+-.|+--.|+.|.+-=-+ .++.||-||+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 44579999999763 332 23335888899999843222 356899999864
No 132
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=31.23 E-value=30 Score=25.67 Aligned_cols=37 Identities=22% Similarity=0.624 Sum_probs=24.6
Q ss_pred CCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 869 PCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 869 ~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
.|..|-+.+...+.. +..=+..||.+|. .|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcC
Confidence 388888888765322 2234678888774 578887765
No 133
>PLN02436 cellulose synthase A
Probab=30.64 E-value=42 Score=43.68 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=33.7
Q ss_pred CCCCCcccccccC---CCCc-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYT---DGDD-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe---~ge~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
....|.||-+++. ++|. |.+-.|+--.|+.|.+-=-+ ..+.||-||+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 4457999999975 3333 23336888899999843222 356899999864
No 134
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.55 E-value=28 Score=31.29 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=8.5
Q ss_pred hcHHHHHHHHh
Q 002484 892 FHTDCIKLWLM 902 (917)
Q Consensus 892 FH~~CIkqWL~ 902 (917)
||+.|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 135
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.53 E-value=8.4 Score=43.21 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=30.9
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcC
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQK 904 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rk 904 (917)
..|.||+++|..+.....+.|--+||..|+..|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3899999999876666677777799999999999753
No 136
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.62 E-value=46 Score=43.41 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=34.0
Q ss_pred CCCCCcccccccCCCC---c-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTDGD---D-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~ge---~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
....|.||-+++.... . |.+-.|+--.|+.|.+==-+ -...||-||+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 4457999999976433 2 33447888899999843222 356799999864
No 137
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=29.07 E-value=28 Score=45.27 Aligned_cols=36 Identities=22% Similarity=0.584 Sum_probs=25.3
Q ss_pred CCCCCCCCcccccccCCCCceEEe--CCCChhcHHHHH
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVL--DCGHNFHTDCIK 898 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviL--PCgHvFH~~CIk 898 (917)
..+++..|+||++.-.....+.+. .|+=.+|.+|..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 346677899999986663333222 588888888886
No 138
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.94 E-value=55 Score=31.76 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=29.1
Q ss_pred CCCCCcccccccCCC--CceEEeCCCChhcHHHHHHHHhcCC--CCcCcCC
Q 002484 866 DLEPCCICQEEYTDG--DDLGVLDCGHNFHTDCIKLWLMQKN--LCPICKT 912 (917)
Q Consensus 866 e~e~C~ICLEefe~g--e~VviLPCgHvFH~~CIkqWL~rkn--TCPICR~ 912 (917)
....|.+|...|..- .......|+|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 566899999987533 2355668999999999655 11112 4777743
No 139
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.82 E-value=36 Score=38.76 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=34.9
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc---CCCCcCcC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ---KNLCPICK 911 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r---knTCPICR 911 (917)
...|++-.|...++.....|.|||+.-++-+.+.-+. ...||.|=
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3469988888777777888999999998888776542 34699993
No 140
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=28.17 E-value=35 Score=38.85 Aligned_cols=44 Identities=2% Similarity=-0.235 Sum_probs=32.7
Q ss_pred CCCCCCcccccccCCCCceEEeCCCC-hhcHHHHHHHHhcCCCCcCcCCC
Q 002484 865 TDLEPCCICQEEYTDGDDLGVLDCGH-NFHTDCIKLWLMQKNLCPICKTT 913 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge~VviLPCgH-vFH~~CIkqWL~rknTCPICR~~ 913 (917)
....+|..|-+..... ...+|+| .||..|.. +....+||+|..-
T Consensus 341 ~s~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred hhhcccccccCceeee---EeecCCcccChhhhhh--cccCCcccccccc
Confidence 3445688887665433 3448998 89999988 7788999999753
No 141
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.78 E-value=11 Score=41.33 Aligned_cols=48 Identities=33% Similarity=0.659 Sum_probs=36.4
Q ss_pred CCCCCcccccccCCCC-c--eEEeC--------CCChhcHHHHHHHHhcC-CCCcCcCCC
Q 002484 866 DLEPCCICQEEYTDGD-D--LGVLD--------CGHNFHTDCIKLWLMQK-NLCPICKTT 913 (917)
Q Consensus 866 e~e~C~ICLEefe~ge-~--VviLP--------CgHvFH~~CIkqWL~rk-nTCPICR~~ 913 (917)
....|.||...|...+ . -.++. |+|..|..|+..-+.+. -.||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3456999999998432 2 23345 99999999999998765 489999863
No 142
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=25.19 E-value=25 Score=47.12 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=39.7
Q ss_pred CCCCCCCCcccccccCCCCceEEeCCCChhcHHHHHHHHhc----CCCCcCcCCC
Q 002484 863 SPTDLEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQ----KNLCPICKTT 913 (917)
Q Consensus 863 s~~e~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~r----knTCPICR~~ 913 (917)
.......|.||.......+.+.+.-|--.||..|++.-+.. .-.||-|+..
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 33455679999999888765656678889999999998863 3479999864
No 144
>PLN02400 cellulose synthase
Probab=25.06 E-value=44 Score=43.60 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=33.6
Q ss_pred CCCCCcccccccCCCC---c-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 866 DLEPCCICQEEYTDGD---D-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 866 e~e~C~ICLEefe~ge---~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
....|.||-+++...+ . |.+-.|+--.|+.|.+==-+ -...||-||+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrY 88 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRY 88 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcc
Confidence 3457999999976433 2 34447888899999842111 345799999865
No 145
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=36 Score=42.19 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=30.1
Q ss_pred CCCCcccccccC-CCCceEEeCCCChhcHHHHHHHHhcCCCCcCcC
Q 002484 867 LEPCCICQEEYT-DGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICK 911 (917)
Q Consensus 867 ~e~C~ICLEefe-~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR 911 (917)
...|.+|+..-. +.+-.+.+.|+-.||..| |+.....||+|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 346889976533 222335568999999888 777788999993
No 146
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=43 Score=39.38 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=27.6
Q ss_pred CCCCCcccccccCCCC---ceEEeCCCChhcHHHHHHHH
Q 002484 866 DLEPCCICQEEYTDGD---DLGVLDCGHNFHTDCIKLWL 901 (917)
Q Consensus 866 e~e~C~ICLEefe~ge---~VviLPCgHvFH~~CIkqWL 901 (917)
....|+-|.-.++..+ ++..+.|+|.||.-|-..-.
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 4456888888777655 67788999999999976544
No 147
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.23 E-value=60 Score=30.17 Aligned_cols=50 Identities=20% Similarity=0.488 Sum_probs=21.2
Q ss_pred CCCCCCcccccccCCCC--ce--EEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 865 TDLEPCCICQEEYTDGD--DL--GVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 865 ~e~e~C~ICLEefe~ge--~V--viLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
.....|.||-+++...+ ++ ....|+--.|+.|..-=.+ -...||-||...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 34567999999876433 22 2336888889999876555 456799999764
No 148
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=22.57 E-value=29 Score=40.62 Aligned_cols=49 Identities=24% Similarity=0.537 Sum_probs=0.0
Q ss_pred CCCCcccccccC--------------CCC--ceEEeCCCChhcHHHHHHHHhc---------CCCCcCcCCCcC
Q 002484 867 LEPCCICQEEYT--------------DGD--DLGVLDCGHNFHTDCIKLWLMQ---------KNLCPICKTTAL 915 (917)
Q Consensus 867 ~e~C~ICLEefe--------------~ge--~VviLPCgHvFH~~CIkqWL~r---------knTCPICR~~lL 915 (917)
..+|+||+..-. +.. ...--||||+-=.++.+-|-+. +..||.|-.+|-
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 668999987532 110 1122399999999999999763 347999977653
No 149
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.20 E-value=89 Score=40.84 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=35.5
Q ss_pred CCCCCCCcccccccCCC---Cc-eEEeCCCChhcHHHHHHHHh-cCCCCcCcCCCc
Q 002484 864 PTDLEPCCICQEEYTDG---DD-LGVLDCGHNFHTDCIKLWLM-QKNLCPICKTTA 914 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~g---e~-VviLPCgHvFH~~CIkqWL~-rknTCPICR~~l 914 (917)
......|.||-+++... |. |.+-.|+--.|+.|.+-=.+ ....||-||+..
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 34567899999997643 32 33447888899999943233 356799999864
No 150
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.19 E-value=8.4 Score=34.85 Aligned_cols=39 Identities=28% Similarity=0.568 Sum_probs=20.1
Q ss_pred CCCcccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCcCCCc
Q 002484 868 EPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLMQKNLCPICKTTA 914 (917)
Q Consensus 868 e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~rknTCPICR~~l 914 (917)
..|++|..++.... +|++|..|-+. +.....||-|.+++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 35888888755432 56666666554 34566788887765
No 151
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.05 E-value=56 Score=27.40 Aligned_cols=37 Identities=19% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCCCcccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCcCCC
Q 002484 867 LEPCCICQEEYTDGDDLGVLDCGHNFHTDCIKLWLM--QKNLCPICKTT 913 (917)
Q Consensus 867 ~e~C~ICLEefe~ge~VviLPCgHvFH~~CIkqWL~--rknTCPICR~~ 913 (917)
...|+.|-++|.... +...|.++-.. ..-.||+|...
T Consensus 2 ~f~CP~C~~~~~~~~----------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHH----------HHHHHHhHCcCCCCCccCCCchhh
Confidence 457999988654431 12233333332 23469999754
No 152
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=21.91 E-value=29 Score=42.12 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCCCCCCcccccccCCCCceEEeC-CCChhcHHHHHHHHhcCCCCcCcCCCcC
Q 002484 864 PTDLEPCCICQEEYTDGDDLGVLD-CGHNFHTDCIKLWLMQKNLCPICKTTAL 915 (917)
Q Consensus 864 ~~e~e~C~ICLEefe~ge~VviLP-CgHvFH~~CIkqWL~rknTCPICR~~lL 915 (917)
......|.+|+..+...++...+. |.|.++..|+.+|=.....|+.|++.+.
T Consensus 257 q~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~ 309 (553)
T KOG4430|consen 257 QENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVR 309 (553)
T ss_pred hhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccc
Confidence 455667999999988877777774 7799999999999999999999988763
No 153
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=38 Score=42.32 Aligned_cols=47 Identities=32% Similarity=0.594 Sum_probs=34.3
Q ss_pred CCCCCcccccccCCCCc-------eEEeCCCChh--------------------cHHHHHHHHh--------cCCCCcCc
Q 002484 866 DLEPCCICQEEYTDGDD-------LGVLDCGHNF--------------------HTDCIKLWLM--------QKNLCPIC 910 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~-------VviLPCgHvF--------------------H~~CIkqWL~--------rknTCPIC 910 (917)
+...|.-|++++-++.. +.++.||-.| |..|-+++-. +-..||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 44579999999988775 3455787766 8999988754 23469999
Q ss_pred CC
Q 002484 911 KT 912 (917)
Q Consensus 911 R~ 912 (917)
.-
T Consensus 180 GP 181 (750)
T COG0068 180 GP 181 (750)
T ss_pred CC
Confidence 53
No 154
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=21.05 E-value=46 Score=41.15 Aligned_cols=45 Identities=27% Similarity=0.700 Sum_probs=28.2
Q ss_pred CCCcccccccCCCC--ceEEeCCCChhcHHHHHHHHhcC-----CCCcCcCC
Q 002484 868 EPCCICQEEYTDGD--DLGVLDCGHNFHTDCIKLWLMQK-----NLCPICKT 912 (917)
Q Consensus 868 e~C~ICLEefe~ge--~VviLPCgHvFH~~CIkqWL~rk-----nTCPICR~ 912 (917)
..|.||-..=+... .+.+-.|+-.||..|+..|+... ..||-||.
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 34666643322221 12333689999999999998732 35888875
No 155
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.63 E-value=22 Score=39.44 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred CCCCCcccccccCCCCceEEe--CCCChhcHHHHHHHHhcCCCCcCcCC
Q 002484 866 DLEPCCICQEEYTDGDDLGVL--DCGHNFHTDCIKLWLMQKNLCPICKT 912 (917)
Q Consensus 866 e~e~C~ICLEefe~ge~VviL--PCgHvFH~~CIkqWL~rknTCPICR~ 912 (917)
....|+||=..-........- --.|.+|.-|-.+|-..+..||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 346899997764322000000 01356677888999888999999954
Done!