Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>002487
MLATSPGGLHIRPCYPHSSHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYS
ERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD
GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI
DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVG
LVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREI
SNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEE
KVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPM
LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRG
ETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGT
LAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVA
MGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM
KKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSI
IEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGV
FVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD
AENPPVKLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRPYS
NKDRTKKSSGKAVSSQ

High Scoring Gene Products

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  002487
        (916 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370...  2964  6.0e-309  1
UNIPROTKB|Q0BWM9 - symbol:pnp "Polyribonucleotide nucleot...   937  4.3e-143  2
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot...   941  1.1e-142  2
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot...   911  7.1e-141  2
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n...   955  5.0e-140  2
TIGR_CMR|CHY_1758 - symbol:CHY_1758 "polyribonucleotide n...   983  1.3e-139  2
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n...   933  5.7e-139  2
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot...   931  4.0e-138  2
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc...   931  4.0e-138  2
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla...   904  5.1e-138  2
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n...   919  3.5e-137  2
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc...   910  1.9e-136  2
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n...   905  1.1e-135  2
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc...   923  9.5e-135  2
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n...   904  8.8e-130  2
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n...   865  6.4e-125  2
UNIPROTKB|Q2GJV5 - symbol:pnp "Polyribonucleotide nucleot...   849  1.1e-120  2
TIGR_CMR|APH_0767 - symbol:APH_0767 "polyribonucleotide n...   849  1.1e-120  2
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species...   795  2.0e-117  2
UNIPROTKB|O33325 - symbol:pnp "Polyribonucleotide nucleot...   816  1.3e-113  2
TIGR_CMR|CJE_1390 - symbol:CJE_1390 "polyribonucleotide n...   743  2.2e-103  2
UNIPROTKB|Q5RCW2 - symbol:PNPT1 "Polyribonucleotide nucle...   631  1.6e-100  2
UNIPROTKB|Q8TCS8 - symbol:PNPT1 "Polyribonucleotide nucle...   626  6.7e-100  2
UNIPROTKB|G3V6G7 - symbol:Pnpt1 "Polyribonucleotide nucle...   633  2.9e-99   2
UNIPROTKB|E1BIQ0 - symbol:PNPT1 "Uncharacterized protein"...   617  2.9e-99   2
TIGR_CMR|NSE_0057 - symbol:NSE_0057 "polyribonucleotide n...   755  7.6e-99   2
MGI|MGI:1918951 - symbol:Pnpt1 "polyribonucleotide nucleo...   632  2.0e-98   2
FB|FBgn0039846 - symbol:CG11337 species:7227 "Drosophila ...   650  1.3e-96   2
UNIPROTKB|F1NU18 - symbol:PNPT1 "Uncharacterized protein"...   604  1.0e-88   2
UNIPROTKB|E2QWK2 - symbol:PNPT1 "Uncharacterized protein"...   621  2.4e-87   2
WB|WBGene00015266 - symbol:BE0003N10.1 species:6239 "Caen...   606  4.6e-80   2
UNIPROTKB|H7BZ02 - symbol:PNPT1 "Polyribonucleotide nucle...   399  4.7e-74   2
RGD|1307987 - symbol:Pnpt1 "polyribonucleotide nucleotidy...   626  3.4e-61   1
TAIR|locus:2065165 - symbol:DUF5 "AT2G47220" species:3702...   394  3.7e-38   2
UNIPROTKB|I3LEL9 - symbol:LOC100737729 "Uncharacterized p...   307  2.8e-26   1
UNIPROTKB|F1SQL0 - symbol:PNPT1 "Uncharacterized protein"...   235  1.5e-18   1
UNIPROTKB|H7BXF6 - symbol:PNPT1 "Polyribonucleotide nucle...   228  8.1e-18   1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species...   153  3.2e-08   1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe...   152  4.2e-08   1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone...   151  5.6e-08   1
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370...   150  6.7e-08   1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein...   149  9.9e-08   1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone...   144  3.9e-07   1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein...   140  1.2e-06   1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon...   137  2.6e-06   1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh...   131  1.2e-05   1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp...   131  1.2e-05   1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species...   127  3.4e-05   1
UNIPROTKB|H7C3C5 - symbol:PNPT1 "Polyribonucleotide nucle...   102  0.00024   1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone...   117  0.00068   1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot...   102  0.00073   1


>TAIR|locus:2079429 [details] [associations]
            symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
            [GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
            "chloroplast RNA processing" evidence=IGI] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=IMP] [GO:0016120 "carotene biosynthetic process"
            evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
            evidence=IMP] [GO:0016036 "cellular response to phosphate
            starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
            GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
            GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
            GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
            GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
            SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
            RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
            ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
            EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
            GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
            KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
            ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
            GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
            SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
        Length = 922

 Score = 2964 (1048.4 bits), Expect = 6.0e-309, P = 6.0e-309
 Identities = 597/858 (69%), Positives = 678/858 (79%)

Query:    62 RFSVRASATGPEVSEP-VLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD 120
             +FSVRA     +  +   + D   +FP  VSVKIPFG+R+ILVETG MGRQAS AVTVTD
Sbjct:    59 KFSVRALVRPDDTDDADSVGDGSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTD 118

Query:   121 GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI 180
             GETI+YTSVCLADVPSEPSDF PL V+YQERFSA GRTSGGFFKREGRTKDHEVL+CRLI
Sbjct:   119 GETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLI 178

Query:   181 DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVG 240
             DRPLRPT+ KGFY+ETQILSWVLSYDGLH PD             SEVPN+K IAGVRVG
Sbjct:   179 DRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVG 238

Query:   241 LVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREI 300
             L+G +FIVNPT +EME+SQLDL LAG+D AIL IEGY +FL EEML+QAV+VGQDAV+  
Sbjct:   239 LIGGEFIVNPTVKEMEESQLDLFLAGTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQAT 298

Query:   301 SNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEE 360
                ++ L +  GKPKMLD I+LPPPELYKHV+E+AGEEL K LQIK+KI RRKA+SSLEE
Sbjct:   299 CIAIEVLAKKYGKPKMLDAIRLPPPELYKHVKELAGEELTKALQIKSKISRRKAISSLEE 358

Query:   361 KVLTILSENGYVSKDETVGIVETIPXXXXXXXXXXXXXXXXXXXXXXXHIKPKSRKSTPM 420
             KVLTIL+E GYV  +   G +E  P                       HI+P  RK  P+
Sbjct:   359 KVLTILTEKGYVIDEVAFGTIEAQPDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPL 418

Query:   421 LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRG 480
             LFSEVDVKLVFKEV+SK LRRRIVEGG+RSDGR  D IRPI+SRCGLLPRAHGS LFTRG
Sbjct:   419 LFSEVDVKLVFKEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRG 478

Query:   481 ETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGT 540
             ETQ+LAV+TLGDKQMAQRIDNLE  DE KRFYLQY+FPPSSVGEVGRIGAPSRREIGHGT
Sbjct:   479 ETQALAVVTLGDKQMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT 538

Query:   541 LAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVA 600
             LAERALE +LPSD+DFPYTIRVEST+ ESNGSSSMASVCGGCLALQDAGVP+KCS+AG+A
Sbjct:   539 LAERALETILPSDDDFPYTIRVESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIA 598

Query:   601 MGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM 660
             MGMV DT+EFGGDG+PLILSDITG+EDASGDMDFKVAGNEDG+TAFQMDIKVGGITL +M
Sbjct:   599 MGMVWDTEEFGGDGSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIM 658

Query:   661 KKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSI 720
             +KAL QAK GRRHILAEM KCSPPP+ SLSK+APLI IMKV P K+  +IGSGGKKVKSI
Sbjct:   659 EKALIQAKAGRRHILAEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSI 718

Query:   721 IEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGV 780
             IEE+GVEAID +DDGTVKI A D++SLE++KAIIS LTMVP+VGDIYRNCEIKS+APYG 
Sbjct:   719 IEESGVEAIDMQDDGTVKIMAIDVASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGA 778

Query:   781 FVEIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEAD 840
             FVEIAPGREGLCHISELS+ WLAK E             IEVN+KGQLRLS RALLPE++
Sbjct:   779 FVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESE 838

Query:   841 AENPPVKL-PTGDPTKDAAASDKLVG-SPKPKG-------SSSEDTVLPHKKVKVFKRPA 891
              +    K  P GD TKD ++  K V  S K +        SS ++ VL  K V+   R  
Sbjct:   839 TDKDSQKQQPAGDSTKDKSSQRKYVNTSSKDRAAAGASKVSSGDELVLKKKDVR---RAT 895

Query:   892 SPAKDRPYSNKDRTKKSS 909
               + D+  ++   T + S
Sbjct:   896 GGSSDKTMNSNSSTNEES 913


>UNIPROTKB|Q0BWM9 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000158
            GenomeReviews:CP000158_GR GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_762114.1 ProteinModelPortal:Q0BWM9
            STRING:Q0BWM9 GeneID:4288000 KEGG:hne:HNE_3441 PATRIC:32219759
            BioCyc:HNEP228405:GI69-3443-MONOMER Uniprot:Q0BWM9
        Length = 713

 Score = 937 (334.9 bits), Expect = 4.3e-143, Sum P(2) = 4.3e-143
 Identities = 196/415 (47%), Positives = 270/415 (65%)

Query:   428 KLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAV 487
             K VFKE  +  +R  I++ G+R DGR  D IRPI +  G LPR HGS+LFTRGETQ++ V
Sbjct:   296 KTVFKEAEASVVRGDILKTGQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICV 355

Query:   488 ITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALE 547
              TLG     Q ID L+   + K F L Y+FPP SVGE GR+G   RREIGHG LA RAL+
Sbjct:   356 ATLGTSDDEQYIDGLDGTKKEK-FMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALK 414

Query:   548 PVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDT 607
              VLP   DFPYTIR+ S ITESNGSSSMA+VCG  LA+ DAGVP+   ++G+AMG++L+ 
Sbjct:   415 AVLPKHEDFPYTIRMVSEITESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEG 474

Query:   608 DEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQA 667
              EF       +LSDI G ED  GDMDFKVAG E+G+T+ QMDIKV GIT  +M KAL+QA
Sbjct:   475 SEFA------VLSDILGDEDHLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQA 528

Query:   668 KDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVE 727
             K GR HIL EM K        LS++AP + I+KV  +KI  +IGSGGK ++ I++ETG +
Sbjct:   529 KGGRMHILGEMGKALTASRGQLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAK 588

Query:   728 AIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPG 787
              ++ +DDGTV+I+A D  S++ +  +I  +T    VG+IY   ++ S+  +G+FV     
Sbjct:   589 -VNIDDDGTVQISAMDRKSIDAAIKMIKGITAEAEVGEIYEG-KVVSMKDFGIFVNFFGP 646

Query:   788 REGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADAE 842
             ++GL H+S++++  +   +             +  +++G++RLS + +  E   E
Sbjct:   647 KDGLVHVSQMANKRIGHPKEMVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKE 701

 Score = 483 (175.1 bits), Expect = 4.3e-143, Sum P(2) = 4.3e-143
 Identities = 109/294 (37%), Positives = 159/294 (54%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             SV + +  R + +ETG + RQA GAV V  G+TI+  +   A       DFFPL VNYQE
Sbjct:     6 SVSLEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLTVNYQE 65

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             ++ A+GR  GGFFKREGR  + E L  RLIDRP+RP  + GF HE Q++   LSYD  + 
Sbjct:    66 KYFASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLEND 125

Query:   211 PDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
              D             S  P    I   RVG    ++I+NPT  E+E+S+LDL++AG+ DA
Sbjct:   126 ADIIALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVAGTTDA 185

Query:   271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---L 327
             ++M+E     LSE++++ AV  G DA++ + + + AL E   K    +     PP+    
Sbjct:   186 VMMVESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAK----EPFAYEPPDHSAA 241

Query:   328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIV 381
              K V +  G +L K  +I  K  R  A+ + ++K    L     +  DE  G++
Sbjct:   242 LKSVIDTVGADLSKAYKITAKGERYAAIGAAKDKAKAAL-----LGTDEAPGVM 290

 Score = 40 (19.1 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query:   600 AMGMVLDTDEFGGDGTPLILSDITGSEDAS---GDMDFKVAGNEDG 642
             A   +L TDE  G  TP +   +    +AS   GD+  K     DG
Sbjct:   276 AKAALLGTDEAPGVMTPEVFKTVFKEAEASVVRGDI-LKTGQRIDG 320


>UNIPROTKB|P50849 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
            GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
            RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
            IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
            KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
            BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
        Length = 705

 Score = 941 (336.3 bits), Expect = 1.1e-142, Sum P(2) = 1.1e-142
 Identities = 200/412 (48%), Positives = 264/412 (64%)

Query:   427 VKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLA 486
             VK +  ++    +RR I E   R DGR  D IRP+SS  GLLPR HGS LFTRG+TQ+L+
Sbjct:   294 VKQILSKLVKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALS 353

Query:   487 VITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERAL 546
             V TLG     Q +D L   +E KRF   Y+FP  SVGE G +  P RREIGHG L ERAL
Sbjct:   354 VCTLGALGDVQILDGL-GVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERAL 412

Query:   547 EPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLD 606
             EPV+PS+ DFPYT+R+ S + ESNGS+S AS+C   LA+ DAGVPIK  +AG+AMG+V  
Sbjct:   413 EPVIPSEKDFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKS 472

Query:   607 TDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQ 666
              + +       +L+DI G EDA GDMDFKVAG E G+TA QMDIK+ G++  ++++ALQQ
Sbjct:   473 GEHY------TVLTDIQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQ 526

Query:   667 AKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGV 726
             AK GR  IL  ML         LS++AP I  M + P+KI  +IG  GK++  IIEETGV
Sbjct:   527 AKKGRMEILNSMLATLSESRKELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGV 586

Query:   727 EAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAP 786
             + ID E DGT+ I++ D S  +K+K II +L     VG +Y   ++K I  +G FVEI  
Sbjct:   587 K-IDIEQDGTIFISSTDESGNQKAKKIIEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFS 644

Query:   787 GREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPE 838
             G++GL HISEL+   + K E              E++ +G++ LSR+A+L E
Sbjct:   645 GKDGLVHISELALERVGKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAVLRE 696

 Score = 475 (172.3 bits), Expect = 1.1e-142, Sum P(2) = 1.1e-142
 Identities = 104/293 (35%), Positives = 168/293 (57%)

Query:    94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
             I +  R + VETG + +QA+GAV +  G+T + ++   +  P +P DFFPL VNY+ER  
Sbjct:    10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68

Query:   154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDX 213
             A G+  GGF KREGR  +  VL  RLIDRP+RP    GF +E Q++S V+S D     + 
Sbjct:    69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128

Query:   214 XXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
                         S++P    IAGV VG + D+FI+NPT  ++E S ++L++AG+ DAI M
Sbjct:   129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188

Query:   274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKL--PPPELYKHV 331
             +E   D + EE++++A+  G + ++ +    + +V   GK K    IKL     EL + V
Sbjct:   189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEK--SEIKLFEIDEELNEKV 246

Query:   332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
             + +A E+L+K +Q+  K  R  A++ ++  V+    +  +   ++T+  V+ I
Sbjct:   247 KALAEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEEH--DEDTIKQVKQI 297

 Score = 125 (49.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 57/223 (25%), Positives = 103/223 (46%)

Query:   459 RPISSRCGLLPR-AHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
             R ++   G L + A+G+ +   G+T  L+  T   +        L  + E +R Y     
Sbjct:    15 RTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYE-ERLYAVGKI 73

Query:   518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI--TESNGSSSM 575
             P    G + R G PS + +    L +R + P+  +D  F   ++V S +   + N SS M
Sbjct:    74 PG---GFIKREGRPSEKAVLASRLIDRPIRPLF-ADG-FRNEVQVISIVMSVDQNCSSEM 128

Query:   576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
             A++ G  LAL  + +P +  IAGV +G + D D+F       I++      + S D++  
Sbjct:   129 AAMFGSSLALSVSDIPFEGPIAGVTVGRI-D-DQF-------IINPTVDQLEKS-DINLV 178

Query:   636 VAGNEDGITAFQMDIKVGGITLP--VMKKALQQAKDGRRHILA 676
             VAG +D I      ++ G   +P  +M +A+    +  + ++A
Sbjct:   179 VAGTKDAINM----VEAGADEVPEEIMLEAIMFGHEEIKRLIA 217


>UNIPROTKB|Q3IJ73 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
            "protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
            SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
            RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
            STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
            KEGG:pha:PSHAa1001 PATRIC:32295529
            BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
        Length = 708

 Score = 911 (325.7 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
 Identities = 199/421 (47%), Positives = 264/421 (62%)

Query:   426 DVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL 485
             ++  +F  +  K +R RI  G +R DGR  D IR +    G+LPR HGSA+FTRGETQ+L
Sbjct:   294 EIGKIFGSLEKKIVRGRIAAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQAL 353

Query:   486 AVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERA 545
                TLG ++ +Q ID+L    +   F L Y+FPP  VGE G +G+P RREIGHG LA+R 
Sbjct:   354 VTATLGTERDSQLIDDLTGTHK-NHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRG 412

Query:   546 LEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL 605
             +  V+P+  +FPY+IRV S ITESNGSSSMASVCG  LAL +AGVPIK S+AG+AMG+V 
Sbjct:   413 IAAVMPTLTEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVK 472

Query:   606 DTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQ 665
             + D+F      ++LSDI G ED  GDMDFKVAG   GITA QMDIK+ GIT  +M+ AL+
Sbjct:   473 EDDKF------VVLSDILGDEDHLGDMDFKVAGTAGGITALQMDIKIEGITQEIMQIALK 526

Query:   666 QAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETG 725
             QAK  R HIL  M K    PS  LS+ AP I+ MK+  +KI  +IG GG  ++ + EETG
Sbjct:   527 QAKAARLHILEVMDKAISAPSEELSQFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETG 586

Query:   726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA 785
                I+  DDGT+KI A D  S   + + I  LT    VG IY   ++  I  +G FV I 
Sbjct:   587 T-TIEIGDDGTIKIAATDGESAANAISRIEQLTAELEVGTIYEG-KVVRIVDFGAFVNIL 644

Query:   786 PGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLS-RRALLPEADAENP 844
             PG++GL HIS++S+  +                 +EV+ +G++RLS + A+   A A + 
Sbjct:   645 PGKDGLVHISQISTERVNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAPAADA 704

Query:   845 P 845
             P
Sbjct:   705 P 705

 Score = 488 (176.8 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
 Identities = 103/281 (36%), Positives = 163/281 (58%)

Query:    88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNV 146
             Q +  +   G   + +ETG + RQA GAV  + G+T +  +V +    ++P  DFFPL V
Sbjct:     2 QAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTV-VGKREAQPGQDFFPLTV 60

Query:   147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
             NYQER  AAGR  GGF KREGR  D E L+ RLIDRP+RP    GF +E Q+++ V+S +
Sbjct:    61 NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVN 120

Query:   207 GLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
                 PD             S +P S  I   RVG +  ++++NPT +E+E+S+LDL++AG
Sbjct:   121 PEIQPDMVALIGTSAALAISGIPFSGPIGATRVGYIDGEYVLNPTLKELEESKLDLVVAG 180

Query:   267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
             +D+A+LM+E   D L+E++++ AV  G +  + I   +K      GKP    T       
Sbjct:   181 TDNAVLMVESEADVLAEDIMLGAVVYGHEQAQAIITAIKEFKAEAGKPTWDWTAPAKNVS 240

Query:   327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILS 367
             L + V  IA +++ +  +I +K+ R++AL   +++V+ +L+
Sbjct:   241 LEEKVASIAADKVGEAYRITDKVARKEALGVAKDEVVAVLT 281


>TIGR_CMR|SPO_3389 [details] [associations]
            symbol:SPO_3389 "polyribonucleotide
            nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
            ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
            PATRIC:23380231 Uniprot:Q5LN23
        Length = 714

 Score = 955 (341.2 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
 Identities = 204/416 (49%), Positives = 270/416 (64%)

Query:   432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
             K++ +  LR  +V+GG+R DGR    +RPI +  GLLPR HGSALFTRGETQ L V TLG
Sbjct:   301 KKLEAGILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLG 360

Query:   492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
                  Q ID L  + +   F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP
Sbjct:   361 TGDDEQFIDALHGNFK-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLP 419

Query:   552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
             +  DFPYTIRV S ITESNGSSSMASVCGG L++ DAGVP+K ++AGVAMG++L+ D   
Sbjct:   420 APTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDD--- 476

Query:   612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
               G+  +L+DI G ED  GDMDFKVAG E+GIT+ QMDIKV GIT  +M+KAL QAKDGR
Sbjct:   477 --GSYAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGR 534

Query:   672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
              HILAEM K     ++  S HAP I  M++  +KI  +IGSGGK ++ I+E +G + +D 
Sbjct:   535 MHILAEMNKALSGAAD-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDI 592

Query:   732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
              DDG +KI + +  S++K+  +I ++   P  G +Y    +K I  +G FV     R+GL
Sbjct:   593 NDDGIIKIASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVK-IVDFGAFVNFFGKRDGL 651

Query:   792 CHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADAENPPVK 847
              H+S++ +  L                 +  +D+G++RLS + +  E   E  P K
Sbjct:   652 VHVSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIVPEK 707

 Score = 436 (158.5 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
 Identities = 103/289 (35%), Positives = 159/289 (55%)

Query:    90 VSVK-IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
             V+ K + +G+  + +E+G + RQA G+V  T GET +  +V  A       DFFPL V+Y
Sbjct:     4 VTTKSMQWGEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLTVHY 63

Query:   149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
             QE++ AAG+  GGFFKRE R  + E L  RLIDRP+RP  + GF +E  ++  VLS+D +
Sbjct:    64 QEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLV 123

Query:   209 HFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDL 262
             + PD             S VP    IAG RVG V  ++++NPT  +M+D       +LDL
Sbjct:   124 NDPDIVAMIAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQRLDL 183

Query:   263 LLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKL 322
             ++AG+ DA++M+E     L+E  ++ AV      ++ + + + +  E C K     T   
Sbjct:   184 VVAGTKDAVMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFT--- 240

Query:   323 PPP--ELYKHVEEIAGEELVKV-LQIKNKIPRRKALSSLEEKVLTILSE 368
             PP   +LY  V+  AGEE ++    I +K  R  A+++  E +   L+E
Sbjct:   241 PPDYSDLYAAVKA-AGEEQMRAAFAITDKQERTAAVAAAREAIKAALTE 288


>TIGR_CMR|CHY_1758 [details] [associations]
            symbol:CHY_1758 "polyribonucleotide
            nucleotidyltransferase" species:246194 "Carboxydothermus
            hydrogenoformans Z-2901" [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006401 "RNA
            catabolic process" evidence=ISS] [GO:0006402 "mRNA catabolic
            process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824
            RefSeq:YP_360578.1 ProteinModelPortal:Q3ABA6 STRING:Q3ABA6
            GeneID:3727728 KEGG:chy:CHY_1758 PATRIC:21276631
            BioCyc:CHYD246194:GJCN-1757-MONOMER Uniprot:Q3ABA6
        Length = 731

 Score = 983 (351.1 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
 Identities = 213/435 (48%), Positives = 280/435 (64%)

Query:   424 EVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQ 483
             E+ +K +   +  + +R++I++ G R DGR  D +RPI    GLLPR HGS LFTRG+TQ
Sbjct:   301 ELTIKGILDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQ 360

Query:   484 SLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAE 543
              L+++TLG     Q +D+L   +E KRF   Y+FPP SVGEV  +  P RREIGHG LAE
Sbjct:   361 VLSIVTLGAVGDVQILDDL-GIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAE 419

Query:   544 RALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGM 603
             RALEPV+P +  FPYTIR+ S + ESNGS+SM SVCG  LAL DAGVPIK  +AGVAMG+
Sbjct:   420 RALEPVIPPEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGL 479

Query:   604 VLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKA 663
             + + DE        IL+DI G EDA GDMDFKVAG +DGITA QMDIK+ G+T  ++ KA
Sbjct:   480 IKEGDEVA------ILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKA 533

Query:   664 LQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEE 723
             L QA++GR HIL +ML+    P   LS +AP I    V PEKI  IIG GGK +K II+E
Sbjct:   534 LAQAREGRMHILGKMLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDE 593

Query:   724 TGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVE 783
             TGV+ ID EDDG + I A D  + EK+  II NLT    VG +Y   ++  IA +G FVE
Sbjct:   594 TGVK-IDIEDDGRIFIAAVDKEAGEKALNIIENLTKEIEVGKVYLG-KVTRIADFGAFVE 651

Query:   784 IAPG------REGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLP 837
             + PG      +EGL HIS+L+ + + + E             I  +++G+L+LSR+  +P
Sbjct:   652 VVPGVLGLPGKEGLVHISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKDAIP 711

Query:   838 EADA---ENPPVKLP 849
               +    +NPP+  P
Sbjct:   712 AEEVREKKNPPIHKP 726

 Score = 404 (147.3 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
 Identities = 103/308 (33%), Positives = 169/308 (54%)

Query:    88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
             Q +  +I    R + +  G +  QASG+V V+ G+T++  +   +  P E  DFFPL V+
Sbjct:     6 QILEKEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVD 65

Query:   148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
             Y+ERF A G+  GGF KREGR  +  +L  RLIDRP+RP   KGF ++  I++ VLS + 
Sbjct:    66 YEERFYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQ 125

Query:   208 LHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
              + P+             S +P    I  V VGLV D+ ++NPT ++ E S+L L++AG+
Sbjct:   126 DNPPEIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGT 185

Query:   268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMC-----GKPKMLDTIKL 322
              DA++M+E     + EE++I+A+  G + V++I   ++   E        K KM + +  
Sbjct:   186 RDAVMMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKM-EVVVE 244

Query:   323 PPPELYKHVEEIA----GEELVKVLQIK-NKIPRRKALSSLEEKVLTILSENGYVSKDET 377
                EL + V   A     E + K++  K NK  R + L +L++++ T   E  Y  ++ T
Sbjct:   245 EKAELKEAVTAEAYPLLKEAIEKIIAEKFNKQERDEYLENLKKELTTKFLET-YPEEELT 303

Query:   378 V-GIVETI 384
             + GI+++I
Sbjct:   304 IKGILDSI 311

 Score = 123 (48.4 bits), Expect = 0.00078, P = 0.00078
 Identities = 57/224 (25%), Positives = 99/224 (44%)

Query:   459 RPISSRCG-LLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE-SDDEVKRFYLQYS 516
             RP+    G +  +A GS L + G+T  L   T G K+  + ID    + D  +RFY    
Sbjct:    17 RPLKLTAGKVATQASGSVLVSYGDTVVLVTAT-GSKEPREGIDFFPLTVDYEERFYAVGK 75

Query:   517 FPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS--S 574
              P    G + R G PS + I    L +R + P+ P    F   + + +T+   N  +   
Sbjct:    76 IPG---GFIKREGRPSEKAILSARLIDRPIRPLFPKG--FKNDVHIVATVLSVNQDNPPE 130

Query:   575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
             +A++ G   AL  + +P    I  V +G+V   DE       L+++      + S  +  
Sbjct:   131 IAAMNGASAALTLSHLPFLGPIGAVVVGLV--EDE-------LVINPTIEQAEKSR-LHL 180

Query:   635 KVAGNEDGITAFQMDIKVGGITLP--VMKKALQQAKDGRRHILA 676
              VAG  D +    M ++ G   +P  +M +A+ +  +  + I+A
Sbjct:   181 VVAGTRDAV----MMVEAGAQEVPEEIMIEAITRGHEEVKKIVA 220


>TIGR_CMR|GSU_1593 [details] [associations]
            symbol:GSU_1593 "polyribonucleotide
            nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
            PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
            HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
            GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
            BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
        Length = 697

 Score = 933 (333.5 bits), Expect = 5.7e-139, Sum P(2) = 5.7e-139
 Identities = 205/419 (48%), Positives = 264/419 (63%)

Query:   424 EVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQ 483
             E ++K    +   + +R  I++ G R DGR    IRPIS    +LPRAHGSALFTRGETQ
Sbjct:   288 ESEIKGFLGDFEYELVREHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQ 347

Query:   484 SLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAE 543
             +L   TLG     QRID+L  +   KRF L Y+FPP SVGE     AP RREIGHG LAE
Sbjct:   348 ALVASTLGTSIDEQRIDSLYGETR-KRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAE 406

Query:   544 RALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGM 603
             RALE V+P   DFPYTIR+ S I ESNGSSSMA+VCGG LA+ DAGVPIK  +AG+AMG+
Sbjct:   407 RALERVVPKHEDFPYTIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGL 466

Query:   604 VLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKA 663
             + +     G+G   ILSDI G ED  GDMDFKVAG E G+TA QMDIK+ G+T  +M+KA
Sbjct:   467 IKE-----GEGIA-ILSDILGDEDHLGDMDFKVAGTEAGVTAIQMDIKITGVTREIMEKA 520

Query:   664 LQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEE 723
             L QA+DGR HIL +M +    P   LS +AP I  + VK +KI  +IGSGGK ++ I E 
Sbjct:   521 LLQARDGRLHILGKMNQAIAAPRTDLSPYAPRITTIWVKTDKIRDVIGSGGKNIRGITEA 580

Query:   724 TGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVE 783
             TGV +ID ED G + I +    + +K+  +I +LT     G +Y    +K +  +G FVE
Sbjct:   581 TGV-SIDIEDSGRINIASTSKEACDKAIKMIRDLTAEAEEGKLYMGT-VKKVMDFGAFVE 638

Query:   784 IAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRR----ALLPE 838
             I PG +GL HISEL +  +                 I ++ +G+++LSR+    A+LPE
Sbjct:   639 IFPGTDGLVHISELDTERVKNVTDVLNEGDKVLVKCIGIDKQGKIKLSRKEALGAVLPE 697

 Score = 448 (162.8 bits), Expect = 5.7e-139, Sum P(2) = 5.7e-139
 Identities = 100/278 (35%), Positives = 153/278 (55%)

Query:    92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
             V + FG R I + TG   +QASGAV V+ G+T++  +        E  DFFPL VNYQE+
Sbjct:     6 VNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEK 65

Query:   152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
               A G+  GGFFKREGR  D+E L  R IDRP+RP   + F ++TQI++ V+S D  + P
Sbjct:    66 AYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDP 125

Query:   212 DXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
                           S++P    IAGV+VG V  +F+ NPT +++E S L++++A S DA+
Sbjct:   126 GILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRDAV 185

Query:   272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
             +M+EG     SE+ +++A+  G  AV+ I      L ++ G PK           L   V
Sbjct:   186 IMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKTRV 245

Query:   332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSE 368
             +++A   + + ++I  K  R   +  +  + L T+L E
Sbjct:   246 KDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETLLPE 283


>UNIPROTKB|Q9KU76 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
            Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
            RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
            PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
            PATRIC:20080407 Uniprot:Q9KU76
        Length = 709

 Score = 931 (332.8 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
 Identities = 194/416 (46%), Positives = 264/416 (63%)

Query:   426 DVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL 485
             ++  +F ++    +RR I+ G  R DGR  D +R +  R G+LPR HGSALFTRGETQ+L
Sbjct:   293 EIHTIFHDLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAL 352

Query:   486 AVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERA 545
                TLG ++ AQ ID L  + +   F L Y+FPP  VGE G +G+P RREIGHG LA+R 
Sbjct:   353 VTATLGTQRDAQIIDELTGEKK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRG 411

Query:   546 LEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL 605
             +  V+PS  +FPYT+RV S ITESNGSSSMASVCG  LAL DAGVPIK S+AG+AMG+V 
Sbjct:   412 IAAVMPSPEEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVK 471

Query:   606 DTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQ 665
             + ++F      ++LSDI G ED  GDMDFKVAG   G+TA QMDIK+ GIT  +M+ AL 
Sbjct:   472 EENDF------VVLSDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALN 525

Query:   666 QAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETG 725
             QAK  R HIL+ M +      + +S+ AP IH MK+  EKI  +IG GG  ++ + EETG
Sbjct:   526 QAKGARLHILSVMDQAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETG 585

Query:   726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA 785
                I+ EDDGT+KI A D    +++   I  +T    VG IY   ++  +A +G FV I 
Sbjct:   586 T-TIEIEDDGTIKIAATDGDQAKEAIRRIQEITAEVEVGVIYTG-KVARLADFGAFVTIL 643

Query:   786 PGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADA 841
             PG++GL HIS+++   + K               +E++ +G++RLS +  +  +DA
Sbjct:   644 PGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699

 Score = 442 (160.7 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
 Identities = 100/285 (35%), Positives = 150/285 (52%)

Query:    86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
             F +PV     +G+  + +ETG M RQA+ AV  T  +T ++ SV          DFFPL 
Sbjct:     2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61

Query:   146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
             VNYQER  AAG+  GGFFKREGR  + E L+ RLIDRP+RP    GF +E Q+++ V+S 
Sbjct:    62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121

Query:   206 DGLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
             +    PD             S +P +  I   RVG +  + ++NP+ +E++ S+LDL++A
Sbjct:   122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181

Query:   266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
             G+D+A+LM+E     L+EE ++ AV  G D  + +   +         P           
Sbjct:   182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241

Query:   326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLT-ILSEN 369
             EL   V  +A   LV+  QI  K+ R   +  +  +V   +L+EN
Sbjct:   242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAEN 286


>TIGR_CMR|VC_0647 [details] [associations]
            symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
            SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
            RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
            PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
            PATRIC:20080407 Uniprot:Q9KU76
        Length = 709

 Score = 931 (332.8 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
 Identities = 194/416 (46%), Positives = 264/416 (63%)

Query:   426 DVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL 485
             ++  +F ++    +RR I+ G  R DGR  D +R +  R G+LPR HGSALFTRGETQ+L
Sbjct:   293 EIHTIFHDLEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAL 352

Query:   486 AVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERA 545
                TLG ++ AQ ID L  + +   F L Y+FPP  VGE G +G+P RREIGHG LA+R 
Sbjct:   353 VTATLGTQRDAQIIDELTGEKK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRG 411

Query:   546 LEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL 605
             +  V+PS  +FPYT+RV S ITESNGSSSMASVCG  LAL DAGVPIK S+AG+AMG+V 
Sbjct:   412 IAAVMPSPEEFPYTVRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVK 471

Query:   606 DTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQ 665
             + ++F      ++LSDI G ED  GDMDFKVAG   G+TA QMDIK+ GIT  +M+ AL 
Sbjct:   472 EENDF------VVLSDILGDEDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALN 525

Query:   666 QAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETG 725
             QAK  R HIL+ M +      + +S+ AP IH MK+  EKI  +IG GG  ++ + EETG
Sbjct:   526 QAKGARLHILSVMDQAISAARSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETG 585

Query:   726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA 785
                I+ EDDGT+KI A D    +++   I  +T    VG IY   ++  +A +G FV I 
Sbjct:   586 T-TIEIEDDGTIKIAATDGDQAKEAIRRIQEITAEVEVGVIYTG-KVARLADFGAFVTIL 643

Query:   786 PGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADA 841
             PG++GL HIS+++   + K               +E++ +G++RLS +  +  +DA
Sbjct:   644 PGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699

 Score = 442 (160.7 bits), Expect = 4.0e-138, Sum P(2) = 4.0e-138
 Identities = 100/285 (35%), Positives = 150/285 (52%)

Query:    86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
             F +PV     +G+  + +ETG M RQA+ AV  T  +T ++ SV          DFFPL 
Sbjct:     2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61

Query:   146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
             VNYQER  AAG+  GGFFKREGR  + E L+ RLIDRP+RP    GF +E Q+++ V+S 
Sbjct:    62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121

Query:   206 DGLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
             +    PD             S +P +  I   RVG +  + ++NP+ +E++ S+LDL++A
Sbjct:   122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181

Query:   266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
             G+D+A+LM+E     L+EE ++ AV  G D  + +   +         P           
Sbjct:   182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241

Query:   326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLT-ILSEN 369
             EL   V  +A   LV+  QI  K+ R   +  +  +V   +L+EN
Sbjct:   242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAALLAEN 286


>UNIPROTKB|P05055 [details] [associations]
            symbol:pnp "polynucleotide phosphorylase monomer"
            species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
            process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
            "identical protein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
            GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
            eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
            EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
            RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
            PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
            SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
            PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
            EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
            EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
            EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
            KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
            EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
            BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
            EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
        Length = 711

 Score = 904 (323.3 bits), Expect = 5.1e-138, Sum P(2) = 5.1e-138
 Identities = 194/420 (46%), Positives = 258/420 (61%)

Query:   430 VFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVIT 489
             +   +    +R R++ G  R DGR  D IR +  R G+LPR HGSALFTRGETQ+L   T
Sbjct:   296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355

Query:   490 LGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPV 549
             LG  + AQ +D L  +     F   Y+FPP SVGE G +G+P RREIGHG LA+R +  V
Sbjct:   356 LGTARDAQVLDELMGE-RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV 414

Query:   550 LPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDE 609
             +P  + FPYT+RV S ITESNGSSSMASVCG  LAL DAGVPIK ++AG+AMG+V + D 
Sbjct:   415 MPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN 474

Query:   610 FGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKD 669
             +      ++LSDI G ED  GDMDFKVAG+ DGI+A QMDIK+ GIT  +M+ AL QAK 
Sbjct:   475 Y------VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKG 528

Query:   670 GRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAI 729
              R HIL  M +    P   +S+ AP IH +K+ P+KI  +IG GG  ++++ EETG   I
Sbjct:   529 ARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TI 587

Query:   730 DTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGRE 789
             + EDDGTVKI A D    + +   I  +T    VG +Y   ++  I  +G FV I  G+E
Sbjct:   588 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTG-KVTRIVDFGAFVAIGGGKE 646

Query:   790 GLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
             GL HIS+++   + K               +EV+ +G++RLS    + EA  ++ P   P
Sbjct:   647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLS----IKEATEQSQPAAAP 702

 Score = 468 (169.8 bits), Expect = 5.1e-138, Sum P(2) = 5.1e-138
 Identities = 105/299 (35%), Positives = 169/299 (56%)

Query:    89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVN 147
             P+  K  +G   + +ETG M RQA+ AV V+  +T ++ +V +    ++P  DFFPL VN
Sbjct:     4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV-VGQKKAKPGQDFFPLTVN 62

Query:   148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
             YQER  AAGR  G FF+REGR  + E L+ RLIDRP+RP   +GF +E Q+++ V+S + 
Sbjct:    63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122

Query:   208 LHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
                PD             S +P +  I   RVG + D++++NPT  E+++S+LDL++AG+
Sbjct:   123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182

Query:   268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
             + A+LM+E     LSE+ ++ AV  G +  + +   +  LV+  GKP+  D    P  E 
Sbjct:   183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEA 241

Query:   327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLE-EKVLTILSENGYVSKDETVGIVETI 384
             L   V  +A   L    +I +K  R   +  ++ E + T+L+E+  + ++E   I+  I
Sbjct:   242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300


>TIGR_CMR|CBU_0852 [details] [associations]
            symbol:CBU_0852 "polyribonucleotide
            nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
            ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
            KEGG:cbu:CBU_0852 PATRIC:17930401
            BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
        Length = 696

 Score = 919 (328.6 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
 Identities = 193/413 (46%), Positives = 263/413 (63%)

Query:   423 SEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGET 482
             +E ++ ++F E+  + +R +I+ G  R DGR    +RPI+ + G+LPR+HGSALFTRGET
Sbjct:   292 NEHELAVIFHELERRIVREQILTGQPRIDGRDTKTVRPITVKVGVLPRSHGSALFTRGET 351

Query:   483 QSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLA 542
             Q+L V TLG ++ AQ ID+L+ D + + F   Y+FPP  VGEVG +  P RREIGHG LA
Sbjct:   352 QALVVTTLGTERDAQSIDDLDGDRQ-EEFIFHYNFPPFCVGEVGFMSGPKRREIGHGRLA 410

Query:   543 ERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMG 602
             +RA+ PV+P+ + FPY IRV S I ESNGSSSMASVCG  LAL DAGVP K  +AG+AMG
Sbjct:   411 KRAVVPVVPTLDKFPYVIRVVSEILESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMG 470

Query:   603 MVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKK 662
             ++ + D++       +LSDI G ED  GDMDFKVAG  +G+TA QMDIK+ GIT  +M++
Sbjct:   471 LIKENDKYA------VLSDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMEQ 524

Query:   663 ALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIE 722
             AL QAK+GR HIL+ M K    P + +S  AP    MK+ PEKI  +IG GG  ++ I E
Sbjct:   525 ALDQAKEGRLHILSIMNKVLDKPRSQVSDLAPQYVTMKINPEKIRDVIGKGGVVIREITE 584

Query:   723 ETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFV 782
              T   AID  DDGT+KI A      E +K  I  LT    +G +Y    +K I  +G FV
Sbjct:   585 ATNC-AIDISDDGTIKIAAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVK-ITDFGAFV 642

Query:   783 EIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRAL 835
             +I P  +GL HIS+++   +                 IE++ +G++RLS + +
Sbjct:   643 QILPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQGRVRLSMKQI 695

 Score = 445 (161.7 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
 Identities = 99/268 (36%), Positives = 146/268 (54%)

Query:    96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
             +G  ++  ETG M RQA+GAV V  G+T++  SV       E  DFFPL VNYQE+  AA
Sbjct:    10 YGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAA 69

Query:   156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXXX 215
             G+  GG+FKREGR  + E L  RLIDRPLRP   KGF +E Q+++ VLS D     D   
Sbjct:    70 GKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDIPA 129

Query:   216 XXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
                       S +P +  +   RVG  G ++++NP+  E++DS LDL++AG+ DA+LM+E
Sbjct:   130 ILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVE 189

Query:   276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
                  L E +++ AV  G  A++     +   ++  G  K           L K V E +
Sbjct:   190 SEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKWEWEPPTVNTALEKWVVEKS 249

Query:   336 GEELVKVLQIKNKIPRRKALSSLEEKVL 363
                L K  QI+ K  R+  + ++ +++L
Sbjct:   250 EAPLKKAYQIQEKTARQAQIQAIRDQLL 277


>TIGR_CMR|BA_3944 [details] [associations]
            symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
            SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
            RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
            DNASU:1086877 EnsemblBacteria:EBBACT00000009810
            EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
            GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
            KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
            BioCyc:BANT260799:GJAJ-3716-MONOMER
            BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
        Length = 712

 Score = 910 (325.4 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
 Identities = 194/411 (47%), Positives = 263/411 (63%)

Query:   428 KLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAV 487
             ++++K V  + +RR I     R DGR  D IRP++S  G+L R HGS LFTRG+TQ+L++
Sbjct:   296 EILYKIVKEE-VRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSI 354

Query:   488 ITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALE 547
              TLG     Q +D L   +E KRF   Y+FP  SVGE   +  P RREIGHG L ERALE
Sbjct:   355 CTLGALGDVQILDGL-GVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALE 413

Query:   548 PVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDT 607
             PV+PS+ DFPYT+R+ S + ESNGS+S AS+CG  LA+ DAGVP+K  +AG+AMG+V   
Sbjct:   414 PVIPSEKDFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTG 473

Query:   608 DEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQA 667
             + +       ILSDI G ED  GDMDFKVAG   G+TA QMDIK+ G++  ++++ALQQA
Sbjct:   474 EHY------TILSDIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQA 527

Query:   668 KDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVE 727
             K GR HIL  ML     P   LS +AP I  M + P+KI  +IG  GK++  IIEETGV+
Sbjct:   528 KVGRVHILNHMLSVIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVK 587

Query:   728 AIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPG 787
              ID E DGTV I++ +    +K+K II ++     VG+IY   ++K +  +G FVE+  G
Sbjct:   588 -IDIEQDGTVFISSINQEMNDKAKKIIEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSG 645

Query:   788 REGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPE 838
             ++GL HISEL+   + K E             IE++ +G++ LSR+ LL E
Sbjct:   646 KDGLVHISELALERVGKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVLLKE 696

 Score = 447 (162.4 bits), Expect = 1.9e-136, Sum P(2) = 1.9e-136
 Identities = 93/270 (34%), Positives = 152/270 (56%)

Query:    94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
             I    RQ+ VETG + +QA+GAV V  G+T +  S   A   ++  DFFPL VNY+ER  
Sbjct:    10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68

Query:   154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDX 213
             A G+  GGF KREGR  +  +L  RLIDRP+RP    GF +E Q+++ V+S D     + 
Sbjct:    69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128

Query:   214 XXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
                         S++P    IAG  VG +  +F++NPT ++ E S + L++AG+ DAI M
Sbjct:   129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188

Query:   274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
             +E   D + EE +++A+  G D ++ +    + +V+  GK K    +     +L + V E
Sbjct:   189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248

Query:   334 IAGEELVKVLQIKNKIPRRKALSSLEEKVL 363
             +A +++   +Q+  K  R  A++ ++++V+
Sbjct:   249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI 278


>TIGR_CMR|CPS_2207 [details] [associations]
            symbol:CPS_2207 "polyribonucleotide
            nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
            34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
            activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
            evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
            SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
            PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
        Length = 705

 Score = 905 (323.6 bits), Expect = 1.1e-135, Sum P(2) = 1.1e-135
 Identities = 200/426 (46%), Positives = 264/426 (61%)

Query:   423 SEVDV---KLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTR 479
             ++VDV   K +F ++    +R RI +G  R DGR  + IR +    G+LPR HGSA+FTR
Sbjct:   286 ADVDVQEAKDLFHDLEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTR 345

Query:   480 GETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHG 539
             GETQ+L   TLG ++ AQR+D L  D +   F L Y+FPP  VGE G +G+P RREIGHG
Sbjct:   346 GETQALVTATLGTQRDAQRLDTLMGD-KTDPFMLHYNFPPYCVGETGFVGSPKRREIGHG 404

Query:   540 TLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599
              LA+R +  V+PS  +FPY +RV S ITESNGSSSMASVCG  LAL DAGVPIK S+AG+
Sbjct:   405 RLAKRGMLAVMPSLEEFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGI 464

Query:   600 AMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPV 659
             AMG+V + ++F      ++LSDI G ED  GDMDFKVAG   GITA QMDIK+ GIT  +
Sbjct:   465 AMGLVKEGEKF------VVLSDILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEI 518

Query:   660 MKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKS 719
             M+ AL QAK  R HIL+ M +      + +S+ AP IH MKV  +KI  IIG GG  ++ 
Sbjct:   519 MQIALNQAKAARTHILSVMDEAIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQ 578

Query:   720 IIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYG 779
             + EETG   I+ EDDGTVKI A      E +   I  LT    VG +Y   ++  I  +G
Sbjct:   579 LTEETGT-TIEIEDDGTVKIAATSGEQAEDAINRIKALTAEIEVGTLYTG-KVVRIVDFG 636

Query:   780 VFVEIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEA 839
              FV + PG++GL HIS++S   +                 +EV+ +G++RLS +  + + 
Sbjct:   637 AFVNVLPGKDGLVHISQISEERVNNVSEVLTEGQEVKVKVLEVDRQGRVRLSIKEAMEKP 696

Query:   840 DAENPP 845
              AE  P
Sbjct:   697 AAEATP 702

 Score = 445 (161.7 bits), Expect = 1.1e-135, Sum P(2) = 1.1e-135
 Identities = 101/290 (34%), Positives = 154/290 (53%)

Query:    89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVN 147
             P++ K   G   + +ETG + RQAS AV  +  +T +  SV +    ++P  DFFPL VN
Sbjct:     4 PITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSV-VGKKEAKPGQDFFPLTVN 62

Query:   148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
             YQER  AAG+  G FFKREGR  + E L+ RLIDRP+RP   +GF +E Q++  V+S + 
Sbjct:    63 YQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSVNP 122

Query:   208 LHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
                PD             S +P S  +   RVG    ++I+NP   E+  SQLDL+++G+
Sbjct:   123 EIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVSGT 182

Query:   268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
             D A+LM+E   D LSEE+++ AV  G + ++   + +K        P       +   EL
Sbjct:   183 DSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEFKAEVNTPSWDWVAPVKNAEL 242

Query:   328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDE 376
                + E++  ++ +  QI  K  R + +  +   VL  +L+EN  V   E
Sbjct:   243 LAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALLAENADVDVQE 292


>TIGR_CMR|SO_1209 [details] [associations]
            symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
            ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
            KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
        Length = 699

 Score = 923 (330.0 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
 Identities = 204/437 (46%), Positives = 275/437 (62%)

Query:   410 IKPKSRKSTPMLFSEVDVKLV---FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCG 466
             +K  ++++      +VD++ V      +  K +R RI+ G  R DGR  D +R +S   G
Sbjct:   272 VKAAAKEALLAANPDVDLREVDNLLGSLEKKVVRGRILRGMPRIDGREPDMVRALSVLAG 331

Query:   467 LLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVG 526
             +LPR HGSALFTRGETQ+L   TLG ++ AQ+ID++  +    RF L Y+FPP SVGE G
Sbjct:   332 VLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGE-RTNRFMLHYNFPPYSVGETG 390

Query:   527 RIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQ 586
              +G+P RREIGHG LA R +  V+PS  +FPY++RV S ITESNGSSSMASVCG  LAL 
Sbjct:   391 MVGSPKRREIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITESNGSSSMASVCGTSLALM 450

Query:   587 DAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAF 646
             DAGVPIK S+AG+AMG+V + D+F      ++LSDI G ED  GDMDFKVAG  DG+TA 
Sbjct:   451 DAGVPIKTSVAGIAMGLVKEGDDF------VVLSDILGDEDHLGDMDFKVAGTRDGVTAL 504

Query:   647 QMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKI 706
             QMDIK+ GIT  +M+ ALQQA   R HIL  M +        +S HAP I  +K+ PEKI
Sbjct:   505 QMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAIGSHRADISDHAPRITTIKINPEKI 564

Query:   707 NLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDI 766
               +IG GG  ++++ EETG   I+ EDDGTVKI + +  + +++   I  +T    VG I
Sbjct:   565 RDVIGKGGAVIRALTEETGT-TIELEDDGTVKIASSNGEATKEAIRRIEEITSEVEVGRI 623

Query:   767 YRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKG 826
             Y N ++  I  +G FV I PG++GL HIS++S   +A                +EV+ +G
Sbjct:   624 Y-NGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSDHLELNQEVTVKVMEVDRQG 682

Query:   827 QLRLS-RRALLPEADAE 842
             ++RLS + A   E  AE
Sbjct:   683 RVRLSIKEAQTKEPAAE 699

 Score = 418 (152.2 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
 Identities = 89/263 (33%), Positives = 139/263 (52%)

Query:    89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
             P+     +G   + +ETG + RQA  AV  + G+T +  +V          DFFPL VNY
Sbjct:     3 PIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTVNY 62

Query:   149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
             QE+  AAG+  GGFFKREGR  + E L+ RLIDRP+RP    GF +E Q++  V+S D  
Sbjct:    63 QEKTYAAGKIPGGFFKREGRPSEEETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPE 122

Query:   209 HFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
               PD             S +P +  +   RVG +  ++++NPT +++  SQL+L++AG++
Sbjct:   123 IEPDIISMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPTVKQIGASQLNLVVAGTE 182

Query:   269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
              A+LM+E     L EE+++ +V  G D  + +   +       GKP    T  +    L 
Sbjct:   183 SAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPVEDEALV 242

Query:   329 KHVEEIAGEELVKVLQIKNKIPR 351
               ++E+A    ++  QI+ K  R
Sbjct:   243 AQIKELAEAGFIEAYQIQVKQER 265


>TIGR_CMR|DET_0970 [details] [associations]
            symbol:DET_0970 "polyribonucleotide
            nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
            195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
            HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
            SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
            PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
        Length = 720

 Score = 904 (323.3 bits), Expect = 8.8e-130, Sum P(2) = 8.8e-130
 Identities = 190/419 (45%), Positives = 267/419 (63%)

Query:   422 FSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGE 481
             ++E D+   + +   K +R  I+E   R +GR    +R + +  G+LPR HGSALFTRG+
Sbjct:   285 YAEGDILAAYDKEIKKAIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGD 344

Query:   482 TQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTL 541
             TQ +A+ TLG  Q AQ++D L ++D  KRF L Y+F P S GEV R G+P RREIGHG L
Sbjct:   345 TQVMAITTLGSLQEAQQLDGLSAED-TKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGAL 403

Query:   542 AERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAM 601
             AERAL PVLP+  +FPYTIR+ + +  S+GS+SM SVC   L+L DAGVP+K ++AG+++
Sbjct:   404 AERALVPVLPTPEEFPYTIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISI 463

Query:   602 GMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMK 661
             G++      G + T   ++DI G ED  GDMDFKVAG  DGITA Q+D+KV GI+  V++
Sbjct:   464 GLIT-----GENDTYCTITDIEGIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIR 518

Query:   662 KALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSII 721
              A+ QAK+ R  IL  M K    P   LS +AP ++ + + P KI  +IGSGGK ++SII
Sbjct:   519 DAIYQAKEARYTILEVMDKALAQPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSII 578

Query:   722 EETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVF 781
             E+T    +D E+DGTV I A D +S +K+  II +LT     G +Y   ++  I  +G F
Sbjct:   579 EQTNT-TVDIENDGTVVIGATDEASAQKAIKIIEDLTKDVEAGSVYTG-KVTRIMTFGAF 636

Query:   782 VEIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALL-PEA 839
             VEI PG+EG+ HISEL+ + + K E              E++ +G++ LSRR +L P A
Sbjct:   637 VEILPGKEGMVHISELADHRVEKVEDVVKVGDEITVKVTEIDSQGRINLSRRVILNPNA 695

 Score = 390 (142.3 bits), Expect = 8.8e-130, Sum P(2) = 8.8e-130
 Identities = 87/279 (31%), Positives = 148/279 (53%)

Query:    97 GDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAG 156
             G R++ +E+G M R A  AVT+   +T +  ++C A  P E  DF PL ++Y+ER  AAG
Sbjct:    12 GGRKLTIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLTIDYEERMYAAG 71

Query:   157 RTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXXXX 216
             +  GGF +REGR  +  +L  RL DRPLRP L K + +E QI+  V++ D  +  D    
Sbjct:    72 KIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIASDKENDADIWGV 131

Query:   217 XXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEG 276
                      S++P    +   RVG    +F++NPT  ++E SQ+DL++  +  A++MIE 
Sbjct:   132 VGASTVLTMSQIPYEGPVGASRVGYTNGEFVLNPTFAQLEQSQMDLVVVSTRKAVVMIEA 191

Query:   277 YCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAG 336
                 + E+++I+A++    A +E+ +    +    GK K+   +   P E+   V     
Sbjct:   192 GSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPEEVKAAVAAFVK 251

Query:   337 EELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKD 375
               + + L  ++K  R  A+ +L+ +++  L+E  Y   D
Sbjct:   252 GRVNEALSHQDKTLRENAVEALQSELVEALAET-YAEGD 289


>TIGR_CMR|ECH_0726 [details] [associations]
            symbol:ECH_0726 "polyribonucleotide
            nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
            Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
            ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
            KEGG:ech:ECH_0726 PATRIC:20576896
            BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
        Length = 796

 Score = 865 (309.6 bits), Expect = 6.4e-125, Sum P(2) = 6.4e-125
 Identities = 193/461 (41%), Positives = 275/461 (59%)

Query:   423 SEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGET 482
             S+ D+    K      +R +I++   R DGR  D IR I     +LP+AHGSALFTRG T
Sbjct:   293 SDQDIVTALKTFERSLVRSKIIDTSSRIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNT 352

Query:   483 QSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLA 542
             Q+L V  LG  Q  Q +D+L+ D   + F L Y+FPP +VGE   + AP RREIGHG LA
Sbjct:   353 QALVVTALGTPQDEQIVDDLDGDRR-ENFLLHYNFPPYAVGESAALRAPGRREIGHGKLA 411

Query:   543 ERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMG 602
              RA+  VLP  +DFPYTIRV S ITES+GSSSMA+VCG  LAL D GVPIK  +AG+AMG
Sbjct:   412 WRAIRYVLPEKSDFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMG 471

Query:   603 MVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKK 662
             ++ + D F      +ILSDI G ED  GDMDFKVAG  +G+TA QMD+K+ GI + +++K
Sbjct:   472 LIKEDDRF------IILSDILGDEDHLGDMDFKVAGTAEGVTALQMDMKISGIDIDIIEK 525

Query:   663 ALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIE 722
             AL QAKDGR HIL++M        N +  HAP I  + +  +KI  +IGSGGK ++ I E
Sbjct:   526 ALLQAKDGRMHILSKMNAVIQESRNRIKNHAPRIESIFINKDKIRNVIGSGGKNIRDICE 585

Query:   723 ETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFV 782
             +TG + I+   DGTV I A +  ++E +K++I ++   P +G ++    ++ I  +G FV
Sbjct:   586 KTGAK-IEIIQDGTVMIYAVNNEAVEYAKSMIMDIVTEPEIGKVFEGTVVE-IMKFGAFV 643

Query:   783 EIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADAE 842
                 G++GL HISE+ +  ++                I + D+  ++LS R +  E+   
Sbjct:   644 SFLGGKKGLVHISEIRNEHISSVGSVISLNDKVKVLVIGI-DREHIQLSMRRVDQES--- 699

Query:   843 NPPVKLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKK 883
               P+     +  K++ + D   GS    GSS +++  P+ +
Sbjct:   700 GEPIDGELYNIRKNSFSDDSC-GSTG--GSSFKESYNPNSR 737

 Score = 383 (139.9 bits), Expect = 6.4e-125, Sum P(2) = 6.4e-125
 Identities = 98/289 (33%), Positives = 147/289 (50%)

Query:    96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
             +G + +++E+G + RQASGAV V+   T +  +V       EP DF PL V +  +  A 
Sbjct:    11 WGGKTLVLESGKIARQASGAVMVSYAGTTVLATVVTGKT-KEPVDFLPLTVQFVAKSYAV 69

Query:   156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXXX 215
             G+  GGF KREG+  D E L+ RLIDR +RP    GFY E  I+  +LSYD +  P+   
Sbjct:    70 GKIPGGFLKREGKPSDRETLISRLIDRSIRPLFPAGFYDEISIVCNLLSYDTVTPPEVTA 129

Query:   216 XXXXXXXXXXSEVPNSKVIAGVRVGLVGD--KFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
                       S VP + ++ G RVG +    K+++N +  EM  S LDL L+G++D++LM
Sbjct:   130 LVGATAALSISGVPFNGLVVGARVGYLPSEGKYLLNASADEMLCSSLDLFLSGNEDSVLM 189

Query:   274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
             +E     LSE  ++ A+  G    +E+ N +K      G+   +D I      L   +E 
Sbjct:   190 VESEASELSESQMLGAITFGHQHCQEVINLIKEFSHESGQTP-IDFIPHDISSLVSDIES 248

Query:   334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
                E+    L   N I + + L  LEE    +LSE   V+   + G VE
Sbjct:   249 SYKEDFS--LAYSNTIKKERVLK-LEELRGKVLSE---VADKYSAGDVE 291


>UNIPROTKB|Q2GJV5 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
            catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003729
            GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
            ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
            KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
            ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
            Uniprot:Q2GJV5
        Length = 838

 Score = 849 (303.9 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 198/488 (40%), Positives = 269/488 (55%)

Query:   426 DVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL 485
             D+    K      +R R++E   R DGR  D IR I     L+ +AHGSALFTRG+TQ+L
Sbjct:   300 DIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQAL 359

Query:   486 AVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERA 545
              +  LG  Q  Q +D  + D   +RF L Y+FPP +VGE   +  P RREIGHG LA RA
Sbjct:   360 VITALGTPQDEQIVDGFDGDKR-ERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418

Query:   546 LEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL 605
             + PVLPS  DFPYTIRV S ITES+GSSSMA+VCG  LAL D GVP+K S+AG+AMG++ 
Sbjct:   419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478

Query:   606 DTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQ 665
             + D +       ILSDI G ED  GDMDFKVAG  +GITA QMD+KV GI   V+  AL 
Sbjct:   479 EGDRYA------ILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALD 532

Query:   666 QAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETG 725
             QAK+GR  I+ +M +       ++ +H P +  M +   KI  +IG+GGK V+ I E+TG
Sbjct:   533 QAKEGRFFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTG 592

Query:   726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA 785
              + I+   DGTV I A    ++E +K +I+ +   P VG IY   E+  +A YG FV   
Sbjct:   593 AK-IEISQDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSG-EVCELAKYGAFVTFL 650

Query:   786 PGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEA-DAENP 844
               R+GL HISE+ +  +                 I++ DK  ++LS R +  E  D  + 
Sbjct:   651 GARKGLVHISEIRNEHINAVADVLAVGDKVKVLVIDM-DKDHIQLSMRRIDQETGDQVDC 709

Query:   845 PVKLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNKDR 904
              +  P     ++  A+   VG     G  +    +P      +   ++    R    +D 
Sbjct:   710 ELYAPQ---RRNGVAAGNTVGDSSVNGGGAGSVYVPRGD---YGGASAGRNGRGGGKRDG 763

Query:   905 TKKSSGKA 912
               KSS  A
Sbjct:   764 AAKSSSSA 771

 Score = 359 (131.4 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 85/278 (30%), Positives = 144/278 (51%)

Query:    94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
             + +GDR + +E+G + RQA GAV V  G T +  +V ++    E  DF PL V +  +  
Sbjct:     9 VEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATV-VSQKSKEAVDFLPLTVQFLAKSY 67

Query:   154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDX 213
             A G+  GGFFKREG+  D E L+ R+IDR +RP    GF  E  ++  +LSYD    P+ 
Sbjct:    68 AVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSYDASSPPET 127

Query:   214 XXXXXXXXXXXXSEVPNSKVIAGVRVGLV-GD-KFIVNPTTQEMEDSQLDLLLAGSDDAI 271
                         S +P    +AG R+G + G+ ++I+NP+  E+  S LD+  A +D +I
Sbjct:   128 VALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMFYARTDTSI 187

Query:   272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
             LM+E     L+E  ++ A+Q G +   EI   +K + E   + +     +  P +L   +
Sbjct:   188 LMVESEAHELTEAEMLGALQFGHEHCEEI---IKVIGEFAEEARKCAPAEFVPCDLSTII 244

Query:   332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN 369
             + I  +   + L   ++  ++  ++ L+  V   L+E+
Sbjct:   245 DSIGSDYKERFLVAYSEKEKKARVAKLDA-VRASLTED 281

 Score = 37 (18.1 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query:   413 KSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
             ++RK  P  F   D+  +   + S +  R +V
Sbjct:   226 EARKCAPAEFVPCDLSTIIDSIGSDYKERFLV 257


>TIGR_CMR|APH_0767 [details] [associations]
            symbol:APH_0767 "polyribonucleotide
            nucleotidyltransferase" species:212042 "Anaplasma phagocytophilum
            HZ" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
            GO:GO:0003729 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
            ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
            KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
            ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
            Uniprot:Q2GJV5
        Length = 838

 Score = 849 (303.9 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 198/488 (40%), Positives = 269/488 (55%)

Query:   426 DVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL 485
             D+    K      +R R++E   R DGR  D IR I     L+ +AHGSALFTRG+TQ+L
Sbjct:   300 DIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQAL 359

Query:   486 AVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERA 545
              +  LG  Q  Q +D  + D   +RF L Y+FPP +VGE   +  P RREIGHG LA RA
Sbjct:   360 VITALGTPQDEQIVDGFDGDKR-ERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418

Query:   546 LEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL 605
             + PVLPS  DFPYTIRV S ITES+GSSSMA+VCG  LAL D GVP+K S+AG+AMG++ 
Sbjct:   419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478

Query:   606 DTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQ 665
             + D +       ILSDI G ED  GDMDFKVAG  +GITA QMD+KV GI   V+  AL 
Sbjct:   479 EGDRYA------ILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALD 532

Query:   666 QAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETG 725
             QAK+GR  I+ +M +       ++ +H P +  M +   KI  +IG+GGK V+ I E+TG
Sbjct:   533 QAKEGRFFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTG 592

Query:   726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA 785
              + I+   DGTV I A    ++E +K +I+ +   P VG IY   E+  +A YG FV   
Sbjct:   593 AK-IEISQDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSG-EVCELAKYGAFVTFL 650

Query:   786 PGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEA-DAENP 844
               R+GL HISE+ +  +                 I++ DK  ++LS R +  E  D  + 
Sbjct:   651 GARKGLVHISEIRNEHINAVADVLAVGDKVKVLVIDM-DKDHIQLSMRRIDQETGDQVDC 709

Query:   845 PVKLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNKDR 904
              +  P     ++  A+   VG     G  +    +P      +   ++    R    +D 
Sbjct:   710 ELYAPQ---RRNGVAAGNTVGDSSVNGGGAGSVYVPRGD---YGGASAGRNGRGGGKRDG 763

Query:   905 TKKSSGKA 912
               KSS  A
Sbjct:   764 AAKSSSSA 771

 Score = 359 (131.4 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 85/278 (30%), Positives = 144/278 (51%)

Query:    94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
             + +GDR + +E+G + RQA GAV V  G T +  +V ++    E  DF PL V +  +  
Sbjct:     9 VEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATV-VSQKSKEAVDFLPLTVQFLAKSY 67

Query:   154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDX 213
             A G+  GGFFKREG+  D E L+ R+IDR +RP    GF  E  ++  +LSYD    P+ 
Sbjct:    68 AVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSYDASSPPET 127

Query:   214 XXXXXXXXXXXXSEVPNSKVIAGVRVGLV-GD-KFIVNPTTQEMEDSQLDLLLAGSDDAI 271
                         S +P    +AG R+G + G+ ++I+NP+  E+  S LD+  A +D +I
Sbjct:   128 VALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMFYARTDTSI 187

Query:   272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
             LM+E     L+E  ++ A+Q G +   EI   +K + E   + +     +  P +L   +
Sbjct:   188 LMVESEAHELTEAEMLGALQFGHEHCEEI---IKVIGEFAEEARKCAPAEFVPCDLSTII 244

Query:   332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN 369
             + I  +   + L   ++  ++  ++ L+  V   L+E+
Sbjct:   245 DSIGSDYKERFLVAYSEKEKKARVAKLDA-VRASLTED 281

 Score = 37 (18.1 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query:   413 KSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
             ++RK  P  F   D+  +   + S +  R +V
Sbjct:   226 EARKCAPAEFVPCDLSTIIDSIGSDYKERFLV 257


>TAIR|locus:2222662 [details] [associations]
            symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
            evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
            evidence=IGI] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IGI] [GO:0042991
            "transcription factor import into nucleus" evidence=RCA]
            HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
            GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
            GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
            HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
            HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
            EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
            UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
            PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
            KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
            OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
            Genevestigator:Q9S7G6 Uniprot:Q9S7G6
        Length = 991

 Score = 795 (284.9 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
 Identities = 175/425 (41%), Positives = 249/425 (58%)

Query:   434 VTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDK 493
             V  K +R R++  G R DGR  D +RPI      LP  HGSALF+RG+TQ L  +TLG  
Sbjct:   349 VRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAP 408

Query:   494 QMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSD 553
               AQ +D+L    + KRF L YSFPP    EVG+ G  +RRE+GHGTLAE+AL  VLP +
Sbjct:   409 AEAQSLDSLVGPPK-KRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPE 467

Query:   554 NDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGD 613
               FPYTIR+ S +  S+GS+SMASVCGG +AL DAG+P++  +AGV++G++ D D   G+
Sbjct:   468 EAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGE 527

Query:   614 GTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRR 672
                  I++DI G ED  GDMDFK+AG  DG+TA Q+DIK  GI L ++ ++L+ A++ R 
Sbjct:   528 IKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARL 587

Query:   673 HILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTE 732
              IL  M +    P      ++P +  +K   + +  +IG  G   + I  ETG     + 
Sbjct:   588 QILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARL--SI 645

Query:   733 DDGTVKITAKDLSSLEKSKAIISNLT-MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
             D+GT+ I AK+   +EK++  +  +      VG +Y+   + SI  YG FVE   G++GL
Sbjct:   646 DNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGT-VSSIKEYGAFVEFPGGQQGL 704

Query:   792 CHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRRALLPEADAENPPVKLPTG 851
              H+SELS   ++K               IE + +G ++LSR+ALLP+      P + P  
Sbjct:   705 LHMSELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPK------PKRKPAS 758

Query:   852 DPTKD 856
             D  KD
Sbjct:   759 DAGKD 763

 Score = 382 (139.5 bits), Expect = 2.0e-117, Sum P(2) = 2.0e-117
 Identities = 101/305 (33%), Positives = 157/305 (51%)

Query:    72 PEVSE-PVLSDA--LPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTS 128
             P V + PV +    L SF +   V    G R +  ETG + R A+G+V +   ET + ++
Sbjct:    36 PSVPDSPVSAGTKILESFKEEFEV----GSRVVSFETGKIARFANGSVVLGMDETKVLST 91

Query:   129 VCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTL 188
             V  A   S P DF PL V+YQE+  A G     + +REG  K+ E+L  RLIDRP+RP  
Sbjct:    92 VTCAKTDS-PRDFLPLTVDYQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLF 150

Query:   189 IKGFYHETQILSWVLSYDGLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIV 248
               GFYHE QI++ VLS DG   PD             S+VP    I  +R+G +  +F+V
Sbjct:   151 PTGFYHEVQIMASVLSSDGKQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVV 210

Query:   249 NPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQ-DAVREISNEVKAL 307
             NPT  E+  S L+L+ A + D  +MI+     +SE+ L  A+++   +AV+ +  +++ L
Sbjct:   211 NPTMDELSSSDLNLIYACTRDKTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIR-L 269

Query:   308 VEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKN--KIPRRKALSSLEEKVLTI 365
              E  GK K    + +   +  + V ++A   +  V    +  K  R +AL ++ + V  +
Sbjct:   270 AEKAGKQKKEYKLSMLSDKTLEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKV 329

Query:   366 LSENG 370
               E G
Sbjct:   330 FEEEG 334

 Score = 38 (18.4 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   851 GDPTKDAAASDKLVGSPKPK 870
             G P  +A + D LVG PK +
Sbjct:   406 GAPA-EAQSLDSLVGPPKKR 424


>UNIPROTKB|O33325 [details] [associations]
            symbol:pnp "Polyribonucleotide nucleotidyltransferase"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] HAMAP:MF_01595 InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR014069 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005829 GO:GO:0005886 GO:GO:0005618 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
            GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 PIR:F70883 RefSeq:NP_217299.1
            RefSeq:NP_337358.1 RefSeq:YP_006516229.1 ProteinModelPortal:O33325
            SMR:O33325 PRIDE:O33325 EnsemblBacteria:EBMYCT00000001176
            EnsemblBacteria:EBMYCT00000071784 GeneID:13317568 GeneID:888467
            GeneID:925429 KEGG:mtc:MT2853 KEGG:mtu:Rv2783c KEGG:mtv:RVBD_2783c
            PATRIC:18128028 TubercuList:Rv2783c TIGRFAMs:TIGR02696
            Uniprot:O33325
        Length = 752

 Score = 816 (292.3 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
 Identities = 188/418 (44%), Positives = 256/418 (61%)

Query:   424 EVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQ 483
             E +V    + +T K +R+RI+    R DGR    IR +S+   ++PRAHGSALF RGETQ
Sbjct:   321 EKEVGAALRALTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQ 380

Query:   484 SLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAE 543
              L V TL   +MAQ+ID+L  +   KR+   Y+FPP S GE GR+G+P RREIGHG LAE
Sbjct:   381 ILGVTTLDMIKMAQQIDSLGPETS-KRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAE 439

Query:   544 RALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGM 603
             RAL PVLPS  +FPY IR  S    SNGS+SM SVC   LAL +AGVP+K  +AG+AMG+
Sbjct:   440 RALVPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGL 499

Query:   604 VLDTDEFGG--DGTP----LILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITL 657
             V D  +  G  DG      + L+DI G+EDA GDMDFKVAG +D +TA Q+D K+ GI  
Sbjct:   500 VSDDIQVEGAVDGVVERRFVTLTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPS 559

Query:   658 PVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKV 717
              V+  AL+QAKD R  IL  M +    P + +S +AP +  +KV  +KI  +IG  GK +
Sbjct:   560 QVLAGALEQAKDARLTILEVMAEAIDRP-DEMSPYAPRVTTIKVPVDKIGEVIGPKGKVI 618

Query:   718 KSIIEETGVEAIDTEDDGTVKITAKD----LSSLEKSKAIISNLTMVPTVGDIYRNCEIK 773
              +I EETG + I  EDDGTV + A D     ++++K  AI +    +PTVG+ +    +K
Sbjct:   619 NAITEETGAQ-ISIEDDGTVFVGATDGPSAQAAIDKINAIAN--PQLPTVGERFLGTVVK 675

Query:   774 SIAPYGVFVEIAPGREGLCHISELSSNW-LAKAEXXXXXXXXXXXXXIEVNDKGQLRL 830
             +   +G FV + PGR+GL HIS+L     +AK E              +++ +G++ L
Sbjct:   676 T-TDFGAFVSLLPGRDGLVHISKLGKGKRIAKVEDVVNVGDKLRVEIADIDKRGKISL 732

 Score = 325 (119.5 bits), Expect = 1.3e-113, Sum P(2) = 1.3e-113
 Identities = 77/209 (36%), Positives = 111/209 (53%)

Query:    96 FGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSA 154
             FG R I  ETG +  QA+GAV    D + ++ ++   +  P E  DFFPL V+ +ER  A
Sbjct:    22 FGTRTIRFETGRLALQAAGAVVAYLDDDNMLLSATTASKNPKEHFDFFPLTVDVEERMYA 81

Query:   155 AGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXX 214
             AGR  G FF+REGR     +L CRLIDRPLRP+ + G  +E QI+  +LS D     D  
Sbjct:    82 AGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQIVVTILSLDPGDLYDVL 141

Query:   215 XXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG----SDDA 270
                          +P S  I GVRV L+   ++  PT  ++E +  D+++AG     D A
Sbjct:   142 AINAASASTQLGGLPFSGPIGGVRVALIDGTWVGFPTVDQIERAVFDMVVAGRIVEGDVA 201

Query:   271 ILMIEGYCDFLSEEMLIQAVQVGQDAVRE 299
             I+M+E      + E +++ V+ G  A  E
Sbjct:   202 IMMVEAE----ATENVVELVEGGAQAPTE 226

 Score = 76 (31.8 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 23/118 (19%), Positives = 55/118 (46%)

Query:   267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP--P 324
             +++ + ++EG     +E ++   ++  +  +  +    + L +  GK     T+  P  P
Sbjct:   210 TENVVELVEGGAQAPTESVVAAGLEAAKPFIAALCTAQQELADAAGKSGK-PTVDFPVFP 268

Query:   325 P---ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVG 379
                 ++Y  V  +A +EL   L I  K  R + +  ++ +V+  L++  Y  +++ VG
Sbjct:   269 DYGEDVYYSVSSVATDELAAALTIGGKAERDQRIDEIKTQVVQRLADT-YEGREKEVG 325


>TIGR_CMR|CJE_1390 [details] [associations]
            symbol:CJE_1390 "polyribonucleotide
            nucleotidyltransferase" species:195099 "Campylobacter jejuni
            RM1221" [GO:0004654 "polyribonucleotide nucleotidyltransferase
            activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
            evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 OMA:YTMRVVS HOGENOM:HOG000218326
            ProtClustDB:PRK11824 RefSeq:YP_179377.1 ProteinModelPortal:Q5HTK8
            STRING:Q5HTK8 GeneID:3231896 KEGG:cjr:CJE1390 PATRIC:20044580
            BioCyc:CJEJ195099:GJC0-1417-MONOMER Uniprot:Q5HTK8
        Length = 719

 Score = 743 (266.6 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
 Identities = 174/392 (44%), Positives = 240/392 (61%)

Query:   422 FSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGE 481
             +SE  V     +V  K +R +I+  G+R+DGR  + +RPIS    +LP AHGS LFTRG+
Sbjct:   309 WSEESVLNTLAKVKRKLIRGQILNEGKRADGRSLNEVRPISIETNILPNAHGSCLFTRGQ 368

Query:   482 TQSLAVITLGDKQMAQRIDNLESDDEV-KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGT 540
             TQ+L V TLG +  AQ ID L   + + +RF + Y+FP  SVGE   I AP RRE+GHG 
Sbjct:   369 TQALVVATLGGENDAQMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGN 428

Query:   541 LAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVA 600
             LA+RAL P +  D ++PY IR+ S I ESNGSSSMA+VCGG LAL+ AGVP    +AGVA
Sbjct:   429 LAKRALYPSV--DENYPYVIRLVSEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVA 486

Query:   601 MGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM 660
             MG++ + +++       +L+DI G ED  GDMDFKVAG++DG+TA QMDIK+GGI    +
Sbjct:   487 MGLIFEDNKYA------VLTDIMGLEDHDGDMDFKVAGSKDGVTALQMDIKLGGIDQETL 540

Query:   661 KKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSI 720
             K+AL QAK+GR HIL  M + +     +  +  P + +  V P KI  IIG  GK +K I
Sbjct:   541 KQALYQAKEGRIHILNIMEEAAKEIIVN-EEVLPKLELFSVDPSKIVDIIGQAGKTIKEI 599

Query:   721 IEETGVEAIDTE-DDGTVKITAKDLSSLEKSKAIISNLTMVPT---------------VG 764
             +E+ GV +ID + + G VKI       ++ +K  I N+T                   +G
Sbjct:   600 VEKFGV-SIDLDREKGEVKIAGSQNEQIKAAKDYIINITSSQKGTKKGSKDKDISGFELG 658

Query:   765 DIYRNCEIKSIAPYGVFVEIAPGREGLCHISE 796
               ++   +K IAP+G FVE+  G +GL H S+
Sbjct:   659 QEFQGI-VKKIAPFGAFVELKNGVDGLLHSSK 689

 Score = 301 (111.0 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
 Identities = 78/258 (30%), Positives = 133/258 (51%)

Query:   108 MGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREG 167
             + +QA+GAV +  G++++  +V   +   E  DF PL V Y E+  AAG+  GG+ KRE 
Sbjct:    19 VAKQAAGAVLMRQGKSVVLATVAREEKQVE-EDFLPLTVQYIEKAYAAGKIPGGYVKRET 77

Query:   168 RTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXXXXXXXXXXXXXSE 227
             +  D E L  R+IDR LRP   KG+ + TQI+  VLS D                   S+
Sbjct:    78 KPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSD 137

Query:   228 VPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE--GYCDFLSEEM 285
             +P    + GVR+G +   FI+NP  +E+++S LDL +AG  D +LMIE     D    E+
Sbjct:   138 IPMKAPVCGVRIGKIDGNFILNPNNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEI 197

Query:   286 LIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK----HVEEIAGEELVK 341
              I+A     D + + +++   + E+  + ++L+ + L    +      + E  +  +   
Sbjct:   198 FIEAPYA--DVLTQTTSQ--NMNEL-SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNS 252

Query:   342 VLQIKNKIPRRKALSSLE 359
              +++KN+I   + L+ +E
Sbjct:   253 QIELKNEIEYPEILAFIE 270

 Score = 40 (19.1 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query:   826 GQLRLSRRALLPEADAENPP 845
             G   L++RAL P  D EN P
Sbjct:   425 GHGNLAKRALYPSVD-ENYP 443


>UNIPROTKB|Q5RCW2 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9601 "Pongo abelii" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000957
            "mitochondrial RNA catabolic process" evidence=ISS] [GO:0000958
            "mitochondrial mRNA catabolic process" evidence=ISS] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=ISS] [GO:0000964 "mitochondrial RNA 5'-end processing"
            evidence=ISS] [GO:0000965 "mitochondrial RNA 3'-end processing"
            evidence=ISS] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
            [GO:0008266 "poly(U) RNA binding" evidence=ISS] [GO:0034046
            "poly(G) RNA binding" evidence=ISS] [GO:0034599 "cellular response
            to oxidative stress" evidence=ISS] [GO:0035198 "miRNA binding"
            evidence=ISS] [GO:0035927 "RNA import into mitochondrion"
            evidence=ISS] [GO:0035928 "rRNA import into mitochondrion"
            evidence=ISS] [GO:0043457 "regulation of cellular respiration"
            evidence=ISS] [GO:0043631 "RNA polyadenylation" evidence=ISS]
            [GO:0045025 "mitochondrial degradosome" evidence=ISS] [GO:0045926
            "negative regulation of growth" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0061014 "positive regulation
            of mRNA catabolic process" evidence=ISS] [GO:0070207 "protein
            homotrimerization" evidence=ISS] [GO:0070584 "mitochondrion
            morphogenesis" evidence=ISS] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=ISS]
            [GO:0071850 "mitotic cell cycle arrest" evidence=ISS] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=ISS] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=ISS]
            [GO:2000772 "regulation of cellular senescence" evidence=ISS]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0008266 GO:GO:0016020 GO:GO:0005758 GO:GO:0034599
            GO:GO:0045926 GO:GO:0035198 GO:GO:0070207 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
            GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
            InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
            SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 CTD:87178 HOVERGEN:HBG053625 GO:GO:0097222
            GO:GO:0000965 GO:GO:0000964 GO:GO:2000627 GO:GO:0000962
            GO:GO:0035928 EMBL:CR858156 RefSeq:NP_001125193.1 UniGene:Pab.14131
            ProteinModelPortal:Q5RCW2 SMR:Q5RCW2 PRIDE:Q5RCW2 GeneID:100172084
            KEGG:pon:100172084 Uniprot:Q5RCW2
        Length = 783

 Score = 631 (227.2 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
 Identities = 158/448 (35%), Positives = 233/448 (52%)

Query:   431 FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITL 490
             F  V  +  R  I+   +R DGR    +R +S    +    HGSALF RG+TQ L  +T 
Sbjct:   340 FNVVAKEVFRNIILNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTF 399

Query:   491 GDKQMAQRIDN-LESDDEVK--RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALE 547
                +   + D  + + + +K   F L Y FPP +  E+G++   +RRE+GHG LAE+AL 
Sbjct:   400 DSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALY 459

Query:   548 PVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDT 607
             PV+P   DFP+TIRV S + ESNGSSSMAS CGG LAL D+GVPI  ++AGVA+G+V  T
Sbjct:   460 PVIP--RDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKT 517

Query:   608 DEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQ 666
             D   G+     +L+DI G ED +GDMDFK+AG   GITA Q DIK+ GI + ++ +A+QQ
Sbjct:   518 DPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQ 577

Query:   667 AKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGV 726
             A   ++ IL  M K    P  S  ++ P++  ++V   K    +G GG  +K +  ETGV
Sbjct:   578 ASVAKKEILQIMNKTISKPRTSRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGV 637

Query:   727 EAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRNCEIKSIAPYGVF 781
               I   D+ T  + A   S+L +++  I+ +           G +Y    I  I   GV 
Sbjct:   638 -TISQVDEETFSVFAPTPSALHEARDFITEICKDDQEQQLEFGAVY-TATITEIRDTGVM 695

Query:   782 VEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--GQLRLSRRALLPE 838
             V++ P     L H ++L    +                     D   G++RLSR+ L   
Sbjct:   696 VKLYPNMTAVLLHNTQLDQRKIRHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSP 755

Query:   839 ADAE----NPPVKLPTGDPTKDAAASDK 862
             A       N    +  G+P   ++++ +
Sbjct:   756 ATTVVRTLNDRSSIVMGEPISQSSSNSQ 783

 Score = 386 (140.9 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
 Identities = 83/272 (30%), Positives = 152/272 (55%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             +V +  G+R++ + +G + R A G+  V  G+T +  +      PS PS F PL V+Y++
Sbjct:    46 AVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PSQFMPLVVDYRQ 104

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             + +AAGR    + +RE  T D E+L  R+IDR +RP    G++++TQ+L  +L+ DG++ 
Sbjct:   105 KAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNE 164

Query:   211 PDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
             PD             S++P +  +  VR+G++  + +VNPT +EM  S L+L++AG+  +
Sbjct:   165 PDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGECVVNPTRKEMSSSTLNLVVAGAPKS 224

Query:   271 -ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DTIKLPPPELY 328
              I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     +  P PE+ 
Sbjct:   225 QIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIV 284

Query:   329 KHVEEIAGEELVKVLQI--KNKIPRRKALSSL 358
             KH  ++A E L  V      +K+ R +A++ +
Sbjct:   285 KHTHKLAMERLYAVFTDYEHDKVSRDEAVNKI 316


>UNIPROTKB|Q8TCS8 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0035458 "cellular
            response to interferon-beta" evidence=IDA] [GO:0061014 "positive
            regulation of mRNA catabolic process" evidence=IMP] [GO:0035927
            "RNA import into mitochondrion" evidence=IDA] [GO:0000964
            "mitochondrial RNA 5'-end processing" evidence=IMP] [GO:0000965
            "mitochondrial RNA 3'-end processing" evidence=IMP] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=IMP] [GO:0070207
            "protein homotrimerization" evidence=IDA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008266 "poly(U)
            RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
            evidence=IDA] [GO:0000962 "positive regulation of mitochondrial RNA
            catabolic process" evidence=IDA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IDA] [GO:0006401 "RNA
            catabolic process" evidence=IDA] [GO:0043631 "RNA polyadenylation"
            evidence=IDA] [GO:0034599 "cellular response to oxidative stress"
            evidence=IDA] [GO:0000957 "mitochondrial RNA catabolic process"
            evidence=IDA] [GO:0006402 "mRNA catabolic process" evidence=IDA]
            [GO:0045926 "negative regulation of growth" evidence=IDA]
            [GO:0071850 "mitotic cell cycle arrest" evidence=IDA] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=IDA]
            [GO:0035198 "miRNA binding" evidence=IDA] [GO:0005758
            "mitochondrial intermembrane space" evidence=IDA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0051260 "protein
            homooligomerization" evidence=IDA] [GO:0000958 "mitochondrial mRNA
            catabolic process" evidence=IDA] [GO:0045025 "mitochondrial
            degradosome" evidence=IDA] [GO:0035928 "rRNA import into
            mitochondrion" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0071042 "nuclear polyadenylation-dependent mRNA
            catabolic process" evidence=IDA] [GO:0043457 "regulation of
            cellular respiration" evidence=ISS] [GO:0070584 "mitochondrion
            morphogenesis" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:2000772 "regulation of cellular senescence" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886
            GO:GO:0008266 GO:GO:0005758 GO:GO:0034599 GO:GO:0045926
            GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
            GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
            InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
            SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 eggNOG:COG1185
            EMBL:AC015982 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:AJ458465
            EMBL:AY027528 EMBL:BC000862 EMBL:BC005986 EMBL:BC053660
            EMBL:AY290863 EMBL:CR749867 IPI:IPI00744711 PIR:T50626
            RefSeq:NP_149100.2 UniGene:Hs.388733 PDB:3U1K PDBsum:3U1K
            ProteinModelPortal:Q8TCS8 SMR:Q8TCS8 STRING:Q8TCS8
            PhosphoSite:Q8TCS8 DMDM:115502437 REPRODUCTION-2DPAGE:IPI00291165
            PaxDb:Q8TCS8 PeptideAtlas:Q8TCS8 PRIDE:Q8TCS8
            Ensembl:ENST00000415374 Ensembl:ENST00000447944 GeneID:87178
            KEGG:hsa:87178 UCSC:uc002rzf.2 CTD:87178 GeneCards:GC02M055861
            H-InvDB:HIX0023979 HGNC:HGNC:23166 HPA:HPA034603 MIM:610316
            neXtProt:NX_Q8TCS8 PharmGKB:PA134915354 HOVERGEN:HBG053625
            InParanoid:Q8TCS8 OMA:YTMRVVS OrthoDB:EOG4T4CTT PhylomeDB:Q8TCS8
            BRENDA:2.7.7.8 GenomeRNAi:87178 NextBio:76209 ArrayExpress:Q8TCS8
            Bgee:Q8TCS8 CleanEx:HS_PNPT1 Genevestigator:Q8TCS8
            GermOnline:ENSG00000138035 GO:GO:0097222 GO:GO:0000965
            GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
            Uniprot:Q8TCS8
        Length = 783

 Score = 626 (225.4 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
 Identities = 159/460 (34%), Positives = 239/460 (51%)

Query:   422 FSEVD-VKLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F E D  +++  F  V  +  R  ++   +R DGR    +R +S    +    HGSALF 
Sbjct:   328 FPEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQ 387

Query:   479 RGETQSLAVITLGDKQMAQRIDN-LESDDEVK--RFYLQYSFPPSSVGEVGRIGAPSRRE 535
             RG+TQ L  +T    +   + D  + + + +K   F L Y FPP +  E+G++   +RRE
Sbjct:   388 RGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRE 447

Query:   536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
             +GHG LAE+AL PV+P   DFP+TIRV S + ESNGSSSMAS CGG LAL D+GVPI  +
Sbjct:   448 LGHGALAEKALYPVIP--RDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSA 505

Query:   596 IAGVAMGMVLDTDEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGG 654
             +AGVA+G+V  TD   G+     +L+DI G ED +GDMDFK+AG   GITA Q DIK+ G
Sbjct:   506 VAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPG 565

Query:   655 ITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGG 714
             I + ++ +A+QQA   ++ IL  M K    P  S  ++ P++  ++V   K    +G GG
Sbjct:   566 IPIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGG 625

Query:   715 KKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRN 769
               +K +  ETGV  I   D+ T  + A   S++ +++  I+ +           G +Y  
Sbjct:   626 YNLKKLQAETGV-TISQVDEETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVY-T 683

Query:   770 CEIKSIAPYGVFVEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--G 826
               I  I   GV V++ P     L H ++L    +                     D   G
Sbjct:   684 ATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADG 743

Query:   827 QLRLSRRALLPEADAE----NPPVKLPTGDPTKDAAASDK 862
             ++RLSR+ L   A       N    +  G+P   ++++ +
Sbjct:   744 RMRLSRKVLQSPATTVVRTLNDRSSIVMGEPISQSSSNSQ 783

 Score = 385 (140.6 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
 Identities = 82/272 (30%), Positives = 153/272 (56%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             +V +  G+R++ + +G + R A G+  V  G+T +  +      PS PS F PL V+Y++
Sbjct:    46 AVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PSQFMPLVVDYRQ 104

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             + +AAGR    + +RE  T D E+L  R+IDR +RP    G++++TQ+L  +L+ DG++ 
Sbjct:   105 KAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNE 164

Query:   211 PDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
             PD             S++P +  +  VR+G++  +++VNPT +EM  S L+L++AG+  +
Sbjct:   165 PDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKS 224

Query:   271 -ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DTIKLPPPELY 328
              I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     +  P PE+ 
Sbjct:   225 QIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIV 284

Query:   329 KHVEEIAGEELVKVLQI--KNKIPRRKALSSL 358
             K+  ++A E L  V      +K+ R +A++ +
Sbjct:   285 KYTHKLAMERLYAVFTDYEHDKVSRDEAVNKI 316


>UNIPROTKB|G3V6G7 [details] [associations]
            symbol:Pnpt1 "Polyribonucleotide nucleotidyltransferase 1"
            species:10116 "Rattus norvegicus" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000958
            "mitochondrial mRNA catabolic process" evidence=IEA] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end processing"
            evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end processing"
            evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0005758
            "mitochondrial intermembrane space" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
            [GO:0034599 "cellular response to oxidative stress" evidence=IEA]
            [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
            into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
            cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
            degradosome" evidence=IEA] [GO:0045926 "negative regulation of
            growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
            catabolic process" evidence=IEA] [GO:0070207 "protein
            homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
            morphogenesis" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=IEA]
            [GO:2000772 "regulation of cellular senescence" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            RGD:1307987 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 CTD:87178 GeneTree:ENSGT00390000014001
            EMBL:CH473996 RefSeq:NP_001135843.1 UniGene:Rn.23118
            ProteinModelPortal:G3V6G7 Ensembl:ENSRNOT00000004919 GeneID:360992
            KEGG:rno:360992 NextBio:674815 Uniprot:G3V6G7
        Length = 784

 Score = 633 (227.9 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 161/429 (37%), Positives = 230/429 (53%)

Query:   422 FSEVD-VKLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F EVD ++++  F  V  +  R  I+   +R DGR    +R IS    +    HGSALF 
Sbjct:   328 FPEVDQLEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQ 387

Query:   479 RGETQSLAVITLGDKQMAQRIDNL-ESDDEVK--RFYLQYSFPPSSVGEVGRIGAPSRRE 535
             RG+TQ L  +T    + + + D +  + + VK   F L Y FPP +  E G++   +RRE
Sbjct:   388 RGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRE 447

Query:   536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
             +GHG LAE+AL PV+P D  FP+TIRV S + ESNGSSSMAS CGG LAL DAGVPI  +
Sbjct:   448 LGHGALAEKALCPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSA 505

Query:   596 IAGVAMGMVLDTDEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGG 654
             +AGVA+G+V  ++   G+     +L+DI G ED +GDMDFK+AG   GITA Q DIK+ G
Sbjct:   506 VAGVAVGLVTKSNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPG 565

Query:   655 ITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGG 714
             + + ++ +A+QQA   +R IL  M K    P  S  ++ P++  +KV   K    IG GG
Sbjct:   566 VPVKIIMEAIQQATVAKREILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGG 625

Query:   715 KKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRN 769
               +K +  ETGV  I   D+ T  I A   +++ +++  I+ +           G +Y  
Sbjct:   626 YHLKKLQAETGV-TISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVY-T 683

Query:   770 CEIKSIAPYGVFVEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--G 826
               I  I   GV V++ P     L H S+L    +                     D   G
Sbjct:   684 ATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADG 743

Query:   827 QLRLSRRAL 835
             ++RLSR+ L
Sbjct:   744 RMRLSRKVL 752

 Score = 372 (136.0 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 85/281 (30%), Positives = 153/281 (54%)

Query:    82 ALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDF 141
             AL S  +  +V +  G R++ + +G + R A G   V  G+T +  +      PS PS F
Sbjct:    37 ALWSGTRSRAVTVDLGHRKLEISSGKLARFADGCAVVQSGDTAVMVTAVSKTKPS-PSQF 95

Query:   142 FPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSW 201
              PL V+Y+++ +AAGR    + +RE  + D E+L  R+IDR +RP    G++++TQ+L  
Sbjct:    96 MPLVVDYRQKAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQVLCN 155

Query:   202 VLSYDGLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLD 261
             +L+ DG++ PD             S++P +  +  VR+G++  + +VNPT +EM  S L+
Sbjct:   156 LLAVDGINEPDILAINGASAALSLSDIPWNGPVGAVRIGMIDGECVVNPTRKEMSSSTLN 215

Query:   262 LLLAGSDDA-ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DT 319
             L++AG+  + I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     
Sbjct:   216 LVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQSIQQLVKEIGVAKRTPQK 275

Query:   320 IKLPPPELYKHVEEIAGEELVKVLQI--KNKIPRRKALSSL 358
             I  P  E+ K+   IA E+L  V      +K+ R +A++ +
Sbjct:   276 IFTPSAEIVKYTHTIAMEKLYAVFTDYEHDKVSRDEAVNKI 316


>UNIPROTKB|E1BIQ0 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:2000772 "regulation of cellular senescence"
            evidence=IEA] [GO:2000627 "positive regulation of miRNA catabolic
            process" evidence=IEA] [GO:0097222 "mitochondrial mRNA
            polyadenylation" evidence=IEA] [GO:0071850 "mitotic cell cycle
            arrest" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0070207
            "protein homotrimerization" evidence=IEA] [GO:0061014 "positive
            regulation of mRNA catabolic process" evidence=IEA] [GO:0045926
            "negative regulation of growth" evidence=IEA] [GO:0045025
            "mitochondrial degradosome" evidence=IEA] [GO:0043457 "regulation
            of cellular respiration" evidence=IEA] [GO:0035928 "rRNA import
            into mitochondrion" evidence=IEA] [GO:0035458 "cellular response to
            interferon-beta" evidence=IEA] [GO:0035198 "miRNA binding"
            evidence=IEA] [GO:0034599 "cellular response to oxidative stress"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005886 "plasma
            membrane" evidence=IEA] [GO:0005758 "mitochondrial intermembrane
            space" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0000965
            "mitochondrial RNA 3'-end processing" evidence=IEA] [GO:0000964
            "mitochondrial RNA 5'-end processing" evidence=IEA] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=IEA] [GO:0000958 "mitochondrial mRNA catabolic process"
            evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886 GO:GO:0008266
            GO:GO:0005758 GO:GO:0034599 GO:GO:0006378 GO:GO:0045926
            GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
            GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
            InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
            SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
            Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 CTD:87178 OMA:YTMRVVS GO:GO:0000965
            GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
            GeneTree:ENSGT00390000014001 EMBL:DAAA02030915 EMBL:DAAA02030914
            IPI:IPI00700535 RefSeq:NP_001179126.1 UniGene:Bt.45909
            ProteinModelPortal:E1BIQ0 Ensembl:ENSBTAT00000011729 GeneID:508877
            KEGG:bta:508877 NextBio:20868715 Uniprot:E1BIQ0
        Length = 783

 Score = 617 (222.3 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 158/429 (36%), Positives = 225/429 (52%)

Query:   422 FSEVD-VKLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F EVD  +++  F   T    R  I+   +R DGR    +R I+    +    HGS+LF 
Sbjct:   328 FPEVDSCEIIESFNIATKDVFRSIILNEYKRCDGRDLTSLRNINCEVDMFKILHGSSLFQ 387

Query:   479 RGETQSLAVITLGDKQM---AQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRRE 535
             RG+TQ L  +T    +    + RI    +  + K F L Y FPP +  E+G++   +RRE
Sbjct:   388 RGQTQVLCTVTFDSLESNFKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGINRRE 447

Query:   536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
             +GHG LAERAL PV+P D  FP+TIRV S + ESNGSSSMAS CGG LAL DAGVPI  +
Sbjct:   448 LGHGALAERALYPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSA 505

Query:   596 IAGVAMGMVLDTDEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGG 654
             +AGVA+G+V       G+     +L+DI G ED  GDMDFK+AG   GITA Q DIK+ G
Sbjct:   506 VAGVAIGLVTKNSPDKGEIEDYRLLTDILGIEDYHGDMDFKIAGTSKGITALQADIKLPG 565

Query:   655 ITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGG 714
             I + ++ +A+QQA   ++ IL  M K    P  S  ++ P++  ++V   K    +G GG
Sbjct:   566 IPIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGG 625

Query:   715 KKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRN 769
               +K +  ETGV  I   D+ T  I A   S++ +++  I+++           G +Y  
Sbjct:   626 YHLKKLQAETGV-TISQVDEETFSIFAPTPSAMHEARDFITDICRDDQEQQLEFGAVY-T 683

Query:   770 CEIKSIAPYGVFVEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--G 826
               I  I   GV V++ P     L H ++L    +                     D   G
Sbjct:   684 ATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPSALGLEVGQEIQVKYFGRDPADG 743

Query:   827 QLRLSRRAL 835
             ++RLSR+ L
Sbjct:   744 RMRLSRKVL 752

 Score = 388 (141.6 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
 Identities = 86/274 (31%), Positives = 154/274 (56%)

Query:    89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
             P SV +  G R++ + +G + R A G+  V  G+T +  +      PS PS F PL V+Y
Sbjct:    44 PRSVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PSQFMPLVVDY 102

Query:   149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
             +++ +AAGR    + +RE  + D E+L  R+IDR +RP    G++++TQIL  +L+ DG+
Sbjct:   103 RQKAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGV 162

Query:   209 HFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
             + PD             S++P +  I  VR+G++  + +VNPT +EM +S L+L++ G+ 
Sbjct:   163 NEPDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMANSTLNLVVTGAP 222

Query:   269 DA-ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DTIKLPPPE 326
              + I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     + +P PE
Sbjct:   223 KSQIVMLEASAENILQQDFCHAIKVGVKHTQQIIQGIQQLVKENGVTKRTPQKLFVPSPE 282

Query:   327 LYKHVEEIAGEELVKVLQI--KNKIPRRKALSSL 358
             + KH  ++A E+L  V      +KI R +A++ +
Sbjct:   283 IVKHAHKLAMEKLYTVFTDYEHDKISRDEAINKI 316


>TIGR_CMR|NSE_0057 [details] [associations]
            symbol:NSE_0057 "polyribonucleotide
            nucleotidyltransferase" species:222891 "Neorickettsia sennetsu str.
            Miyayama" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
            [GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000237
            GenomeReviews:CP000237_GR GO:GO:0000175 InterPro:IPR022967
            SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
            HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_505958.1
            ProteinModelPortal:Q2GEY8 STRING:Q2GEY8 GeneID:3931805
            KEGG:nse:NSE_0057 PATRIC:22680229 BioCyc:NSEN222891:GHFU-94-MONOMER
            Uniprot:Q2GEY8
        Length = 757

 Score = 755 (270.8 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
 Identities = 174/419 (41%), Positives = 249/419 (59%)

Query:   422 FSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGE 481
             ++E +V    K++  + +R+ ++E G R DGR    IRPIS     LP  HGSALFTRG 
Sbjct:   291 YAESEVLFFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGG 350

Query:   482 TQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTL 541
             TQSL V TLG  Q  Q +D+++ +   +   L Y+F P +VGEVG + AP RREIGHG L
Sbjct:   351 TQSLVVATLGSYQDEQVMDDIDGERR-ESVLLHYNFLPYAVGEVGALRAPGRREIGHGRL 409

Query:   542 AERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAM 601
             A +A++ VLP    FPYT+R+ S ITES+GSSSMA+VCG  LAL D GVPI   +AG+AM
Sbjct:   410 ALKAVKAVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAM 469

Query:   602 GMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMK 661
             G++ D     G  +  +LSDI+G ED  GDMDFKVAG  +GI A QMD+KV GI++  ++
Sbjct:   470 GLITD-----GVRSA-VLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIR 523

Query:   662 KALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSII 721
              AL QA  GR HIL +M      P  SL   AP I   K+  + ++ +IGSGGK ++ I 
Sbjct:   524 DALNQALAGRLHILEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGIS 583

Query:   722 EETGVEAIDTEDDGTVKITAKDLSSLEKSKAII-----SNLTMVPT--VGDIYRNCEIKS 774
              +T  + ID + +  V I A    +L ++K  +     ++ + VP   +G++Y   +I S
Sbjct:   584 SDTSAK-IDIDQNNYVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDG-KIVS 641

Query:   775 IAPYGVFVEIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRLSRR 833
             +  +G+FV +   +EGL HISE+S N +                  ++   G+++L+ R
Sbjct:   642 VVDFGLFVVLPNKQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTMR 700

 Score = 246 (91.7 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
 Identities = 73/285 (25%), Positives = 132/285 (46%)

Query:    99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLA-DVPS--EPSDF--FPLNVNYQERFS 153
             + + ++TG + RQA+GA  V+ G T++   V L  D  +  + SD     L  N+  +  
Sbjct:    14 KSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNFLAKSY 73

Query:   154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH-FPD 212
             A GR   GFFKREG+  + EVL  R++DR +RP + +   +E  I+  +L++      P+
Sbjct:    74 ALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVCKLLAHGNRKVLPE 133

Query:   213 XXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
                          S +P S  + GV V + G +   N   +E E   L+L +A ++++++
Sbjct:   134 IPALIAASAALQLSGIPFSGPVIGVDVDMRGSEVTCNEI-RETEGG-LELFVACTEESVV 191

Query:   273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
             M+E      SEE ++ A+     + + + + +   V+     K +  +     EL + V 
Sbjct:   192 MVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVKPIGVL-YDNKELCEKVR 250

Query:   333 EIAGEELVKVL--QIKNKIPRRKALSSLEEKVLTILSENGYVSKD 375
                  +L  V   +I +K  R   L  +       LS++GY   +
Sbjct:   251 AACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSDDGYAESE 295

 Score = 39 (18.8 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query:   552 SDNDFPYTIRVESTITESNGSSS 574
             SD     T+R++     S GSSS
Sbjct:   691 SDGKIKLTMRIDEDRVGSGGSSS 713


>MGI|MGI:1918951 [details] [associations]
            symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
            species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
            activity" evidence=ISO] [GO:0000957 "mitochondrial RNA catabolic
            process" evidence=ISO] [GO:0000958 "mitochondrial mRNA catabolic
            process" evidence=ISO;IMP] [GO:0000962 "positive regulation of
            mitochondrial RNA catabolic process" evidence=ISO] [GO:0000964
            "mitochondrial RNA 5'-end processing" evidence=ISO] [GO:0000965
            "mitochondrial RNA 3'-end processing" evidence=ISO] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
            "mitochondrion" evidence=ISO;IDA] [GO:0005758 "mitochondrial
            intermembrane space" evidence=ISO;IDA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0006402 "mRNA
            catabolic process" evidence=ISO] [GO:0006810 "transport"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=ISO]
            [GO:0016020 "membrane" evidence=IEA] [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            [GO:0034599 "cellular response to oxidative stress" evidence=ISO]
            [GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
            response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
            into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
            mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
            respiration" evidence=IMP] [GO:0043631 "RNA polyadenylation"
            evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
            [GO:0045926 "negative regulation of growth" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
            "positive regulation of mRNA catabolic process" evidence=ISO]
            [GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
            "mitochondrion morphogenesis" evidence=IMP] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=ISO]
            [GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=ISO]
            [GO:2000772 "regulation of cellular senescence" evidence=ISO]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1918951
            Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
            GO:GO:0034599 GO:GO:0045926 GO:GO:0035198 GO:GO:0070207
            GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584
            GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
            GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
            Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
            eggNOG:COG1185 EMBL:BX000351 HOGENOM:HOG000218327 KO:K00962
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:RDKTLMI CTD:87178 HOVERGEN:HBG053625
            OrthoDB:EOG4T4CTT GO:GO:0097222 GO:GO:0000965 GO:GO:0000964
            GO:GO:2000627 GO:GO:0000962 GO:GO:0035928 EMBL:AJ507387
            EMBL:AF465249 EMBL:AK004563 EMBL:AK149419 EMBL:BC027228
            EMBL:BC049283 EMBL:BC055826 IPI:IPI00321923 IPI:IPI00556889
            RefSeq:NP_082145.1 RefSeq:XP_003689309.1 UniGene:Mm.211131 PDB:1WHU
            PDBsum:1WHU ProteinModelPortal:Q8K1R3 SMR:Q8K1R3 STRING:Q8K1R3
            PhosphoSite:Q8K1R3 PaxDb:Q8K1R3 PRIDE:Q8K1R3
            Ensembl:ENSMUST00000020756 GeneID:71701 KEGG:mmu:71701
            UCSC:uc007igp.1 GeneTree:ENSGT00390000014001 InParanoid:Q8K1R3
            EvolutionaryTrace:Q8K1R3 NextBio:334263 Bgee:Q8K1R3
            Genevestigator:Q8K1R3 GermOnline:ENSMUSG00000020464 Uniprot:Q8K1R3
        Length = 783

 Score = 632 (227.5 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 165/459 (35%), Positives = 239/459 (52%)

Query:   422 FSEVD-VKLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F EVD  +++  F  V  +  R  I+   +R DGR    +R IS    +    HGSALF 
Sbjct:   328 FPEVDQFEIIESFNIVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQ 387

Query:   479 RGETQSLAVITLGDKQMAQRIDNL-ESDDEVK--RFYLQYSFPPSSVGEVGRIGAPSRRE 535
             RG+TQ L  +T    + + + D +  + + VK   F L Y FPP +  E G++   +RRE
Sbjct:   388 RGQTQVLCTVTFDSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRE 447

Query:   536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
             +GHG LAE+AL PV+P D  FP+TIRV S + ESNGSSSMAS CGG LAL DAGVPI  +
Sbjct:   448 LGHGALAEKALCPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSA 505

Query:   596 IAGVAMGMVLDTDEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGG 654
             +AGVA+G+V  T+   G+     +L+DI G ED +GDMDFK+AG   GITA Q DIK+ G
Sbjct:   506 VAGVAVGLVTKTNPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPG 565

Query:   655 ITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGG 714
             + + ++ +A+QQA   ++ IL  M K    P  S  ++ P++  +KV   K    +G GG
Sbjct:   566 VPIKIIMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVKVPLSKRAKFVGPGG 625

Query:   715 KKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRN 769
               +K +  ETGV  I   D+ T  I A   +++ +++  I+ +           G +Y  
Sbjct:   626 YHLKKLQAETGV-TISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVY-T 683

Query:   770 CEIKSIAPYGVFVEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--G 826
               I  I   GV V++ P     L H S+L    +                     D   G
Sbjct:   684 ATITEIRDTGVMVKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADG 743

Query:   827 QLRLSRRALLPEADAE----NPPVKLPTGDPTKDAAASD 861
             ++RLSR+ L   A       N    +  G+P   ++ S+
Sbjct:   744 RMRLSRKVLQSPATTALKTLNDRSSIVMGEPVSQSSNSN 782

 Score = 365 (133.5 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 80/272 (29%), Positives = 151/272 (55%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             +V +  G R++ + +G + R A G   +  G+T +  +  ++   + PS F PL V+Y++
Sbjct:    46 AVTVDLGHRKLEISSGKLARFADGCAVIQSGDTAVMVTA-VSKTKASPSQFMPLVVDYRQ 104

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             + +AAGR    + +RE  + D EVL  R+IDR +RP    G++++TQ+L  +L+ DG++ 
Sbjct:   105 KAAAAGRIPTNYLRREIGSSDREVLTSRVIDRSIRPLFPAGYFYDTQVLCNLLAVDGINE 164

Query:   211 PDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
             PD             S++P +  +  VR+G++  + +VNPT +EM  S L+L++AG+  +
Sbjct:   165 PDILAVNGASVALSLSDIPWNGPVGAVRIGMIDGECVVNPTRREMSSSTLNLVVAGAPKS 224

Query:   271 -ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DTIKLPPPELY 328
              I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     I  P  E+ 
Sbjct:   225 QIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVAKRTPQKIFTPSAEIV 284

Query:   329 KHVEEIAGEELVKVLQI--KNKIPRRKALSSL 358
             K+ + IA E+L  V      +K+ R +A++ +
Sbjct:   285 KYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKI 316


>FB|FBgn0039846 [details] [associations]
            symbol:CG11337 species:7227 "Drosophila melanogaster"
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
            InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
            Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
            SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
            Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
            FlyBase:FBgn0039846 EMBL:BT015961 ProteinModelPortal:Q5U1D1
            SMR:Q5U1D1 STRING:Q5U1D1 PRIDE:Q5U1D1 InParanoid:Q5U1D1
            ArrayExpress:Q5U1D1 Bgee:Q5U1D1 Uniprot:Q5U1D1
        Length = 771

 Score = 650 (233.9 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 165/434 (38%), Positives = 233/434 (53%)

Query:   422 FSEVDVKLV---FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F + +  L+   F + +    R  I E G R DGR  D +R IS +  +    HGSALF 
Sbjct:   325 FPDTEPSLITEQFNQTSRTIFRELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQ 384

Query:   479 RGETQSLAVITLGDKQMAQRIDNLESDD----EVKRFYLQYSFPPSSVGEVGRIGAPSRR 534
             RG+TQ    ++L  ++ A ++D+L + D    + K F L Y FPP + GEVGRIG   RR
Sbjct:   385 RGQTQVFCTVSLDSQESAMKLDSLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRR 444

Query:   535 EIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKC 594
             E+GHG LAER+L P LP  ND+P+T+R+ S + ESNGSSSMASVCGG LAL DAGVP+  
Sbjct:   445 EMGHGALAERSLLPTLP--NDYPFTVRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSA 502

Query:   595 SIAGVAMGMVLDTDEFGGDGTP-----LILSDITGSEDASGDMDFKVAGNEDGITAFQMD 649
               AGVA+G+V    +F  D T       IL+DI G ED  GDMD KVAG   G TA Q D
Sbjct:   503 PAAGVAIGLVT---KFENDDTKHLQDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQAD 559

Query:   650 IKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLI 709
             +K+ GI L V+ ++LQ+A D + +IL  M +    P     +  P+   + V+P++   +
Sbjct:   560 LKIPGIPLKVVMESLQKATDAKSNILDIMSEAIREPRKYPKESWPVSETLTVEPQQRAQL 619

Query:   710 IGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTM---VPTV--G 764
             IG  G  +K I  ETG  ++   D+    + A   ++++++K +I    +   VP +  G
Sbjct:   620 IGPSGLHMKRIYLETGT-SLTAVDETHFNVFAPSQAAMDEAKELIEGYMVKERVPDLEFG 678

Query:   765 DIYRNCEIKSIAPYGVFVEIAPGRE-GLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVN 823
              IY   +I  +   GV V + P     L H S+L    +A                    
Sbjct:   679 GIY-TAKITELRDTGVMVILYPSMPPALLHNSQLDQRKIAHPSTLNLEVGQEIQVKYFGR 737

Query:   824 D--KGQLRLSRRAL 835
             D   G +RLSR+ L
Sbjct:   738 DPVSGFMRLSRKVL 751

 Score = 330 (121.2 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 83/279 (29%), Positives = 151/279 (54%)

Query:    91 SVKIPFGD-RQILVETGHMGRQASGAVTVTDGET-IIYTSVCLADVPSEPSDFFPLNVNY 148
             SV++ F + R +   +G + R A+G      G+T ++ T+V  A  P+    F PL V+Y
Sbjct:    41 SVEVNFSNGRNMTFSSGRLARFANGTAVCQMGDTAVMVTAVAKAK-PNPGQGFMPLVVDY 99

Query:   149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
             + + +A+GR    F +RE    + E+L  RLIDR LRP   K +  ETQ++  +L+ D +
Sbjct:   100 RLKNAASGRIPMNFMRRELGPSEKEILSARLIDRSLRPLFHKDYRTETQLVCNMLAMDAV 159

Query:   209 HFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS- 267
             H PD             S++P +  I  VRVGL   + ++NPT +E++ SQLDL+++ + 
Sbjct:   160 HSPDVLAINAASMALSLSDIPWNGPIGAVRVGLCDGEVLINPTRRELQTSQLDLVVSATK 219

Query:   268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM-LDTIKLPPPE 326
              + ++M+EG  + + ++ L++A++ G    + I +E++ L +  G+ K  ++      PE
Sbjct:   220 QNLVVMLEGKGNVVLQQDLLKAIKQGTREAQFIIHEIERLQKAYGRQKREVEVAAEVDPE 279

Query:   327 LYKHVEEIAGEELVKVLQ--IKNKIPRRKALSSLEEKVL 363
             L K V  +    L ++ Q    +K+ R  A++ +   V+
Sbjct:   280 LGKAVRSMCEMRLREIFQDSTHDKMSRDNAVNEVRSNVI 318


>UNIPROTKB|F1NU18 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
            [GO:0000958 "mitochondrial mRNA catabolic process" evidence=IEA]
            [GO:0000962 "positive regulation of mitochondrial RNA catabolic
            process" evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end
            processing" evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end
            processing" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0005758
            "mitochondrial intermembrane space" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
            [GO:0034599 "cellular response to oxidative stress" evidence=IEA]
            [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
            response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
            into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
            cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
            degradosome" evidence=IEA] [GO:0045926 "negative regulation of
            growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
            catabolic process" evidence=IEA] [GO:0070207 "protein
            homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
            morphogenesis" evidence=IEA] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=IEA]
            [GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=IEA]
            [GO:2000772 "regulation of cellular senescence" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
            GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
            GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
            GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
            GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
            Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS GO:GO:0000965 GO:GO:0000964
            GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
            GeneTree:ENSGT00390000014001 EMBL:AADN02046838 IPI:IPI00587631
            Ensembl:ENSGALT00000012892 Uniprot:F1NU18
        Length = 714

 Score = 604 (217.7 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
 Identities = 153/418 (36%), Positives = 217/418 (51%)

Query:   431 FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITL 490
             F  V+    R  I+   RR DGR    +R I     +    HGSALF RG+TQ L  +T 
Sbjct:   270 FNAVSKVIFRNLILNEYRRCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTF 329

Query:   491 GDKQMAQRIDNLE---SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGH-GTLAERAL 546
                + + + D +    S  + K F L Y FPP +  E+G++   +RRE+GH G LAERAL
Sbjct:   330 DSIESSVKSDLISTAVSGIKDKNFMLHYEFPPYATNEIGKVTGVNRRELGHAGALAERAL 389

Query:   547 EPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLD 606
             +PV+P D  FP+TIRV S + ESNGSSSMAS CGG LAL DAGVP+  ++AGVA+G+V  
Sbjct:   390 KPVIPQD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTK 447

Query:   607 TDEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQ 665
              D  G D     +L+DI G ED  GDMDFK+AG   G+TA Q+D+K+ GI + ++ +A+Q
Sbjct:   448 YDPEGRDIEDYRLLTDILGIEDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIMEAIQ 507

Query:   666 QAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETG 725
             QA   +R IL  M +    P  +  +  P++  + V   K    +G G   +K +  +TG
Sbjct:   508 QATAAKREILQIMNETLAKPRPNRKESGPVVETIHVPLSKRLRFLGPGAYNLKKLQAKTG 567

Query:   726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRNCEIKSIAPYGV 780
             V  +   D+ T  + A   S++ +++  I  L           G IY    I  I   GV
Sbjct:   568 V-TLSQLDEETYSMFAPTPSAMHEAREFIGELCKDDQEVNLEFGAIY-TATITEIRDSGV 625

Query:   781 FVEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--GQLRLSRRAL 835
              V++ P     L H S+L    +                     D   G++RLSR+ L
Sbjct:   626 MVKLYPNMTPVLLHNSQLDQRKIKHPSALGLEVGQEIQVKYFGRDPTDGRMRLSRKVL 683

 Score = 301 (111.0 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
 Identities = 70/242 (28%), Positives = 133/242 (54%)

Query:   121 GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI 180
             G+T +  +      PS  S F PL V+Y+++ +AAGR    + +RE  T D E+L  R+I
Sbjct:     6 GDTAVMVTAVSKTKPSA-SQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDKEILTSRVI 64

Query:   181 DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDXXXXXXXXXXXXXSEVPNSKVIAGVRVG 240
             DR +RP    G++++TQIL  +L+ DG++ PD             S++P +  +  VRVG
Sbjct:    65 DRSIRPLFPVGYFYDTQILCNLLAVDGVNDPDVLAINGASAALALSDIPWNGPVGAVRVG 124

Query:   241 LVGDKFIVNPTTQEMEDSQLDLLLAGS-DDAILMIEGYCDFLSEEMLIQAVQVGQDAVRE 299
             LV  + ++NPT ++M  S L+L++A +  + ++M+E   + + ++    A++VG    + 
Sbjct:   125 LVDGETVINPTRKQMSSSTLNLVVAAAPQNQVVMLEATAENILQQDFCHAIKVGVKQTQH 184

Query:   300 ISNEVKALVEMCGKPKM-LDTIKLPPPELYKHVEEIAGEELVKVLQ--IKNKIPRRKALS 356
             I   ++ LV+  G  K  +  + + P E+ +  +++A  ++  V      +KI R +A++
Sbjct:   185 IIQGIQQLVKERGVVKRTVQKLFVAPEEIVECAKKLAFNKIYAVFTDFSHDKISRDEAIN 244

Query:   357 SL 358
              +
Sbjct:   245 KI 246


>UNIPROTKB|E2QWK2 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006402 "mRNA catabolic process"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR003029
            InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
            PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 OMA:YTMRVVS GeneTree:ENSGT00390000014001
            EMBL:AAEX03007533 Ensembl:ENSCAFT00000004640 Uniprot:E2QWK2
        Length = 789

 Score = 621 (223.7 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 156/429 (36%), Positives = 226/429 (52%)

Query:   422 FSEVDV-KLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F E D  +++  F  V  +  R  I+   +R DGR    +R I+    L    HGSALF 
Sbjct:   334 FPEADTYEIIESFNVVAKEVFRSIILNEYKRCDGRDLTSLRNINCEVDLFKTLHGSALFQ 393

Query:   479 RGETQSLAVITLGDKQMAQRIDNLES---DDEVKRFYLQYSFPPSSVGEVGRIGAPSRRE 535
             RG+TQ    +T    + + + D + +     + K F L Y FPP +  E+G++   +RRE
Sbjct:   394 RGQTQVFCTVTFDSLESSIKSDRIITAINGIKDKNFMLHYEFPPYATNEIGKVTGVNRRE 453

Query:   536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
             +GHG LAE+AL PV+P D  FP+TIRV S + ESNGSSSMAS CGG LAL DAGVPI  +
Sbjct:   454 LGHGALAEKALYPVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSA 511

Query:   596 IAGVAMGMVLDTDEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGG 654
             +AGVA+G+V   +   G+     +L+DI G ED +GDMDFK+AG   GITA Q DIK+ G
Sbjct:   512 VAGVAIGLVTKNNPDKGEIEDYRLLTDILGIEDYNGDMDFKIAGTSKGITALQADIKLPG 571

Query:   655 ITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGG 714
             I + ++ +A+QQA   +R IL  M K    P  S  ++ P++  ++V   K    +G GG
Sbjct:   572 IPIKIVMEAIQQASVAKREILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGG 631

Query:   715 KKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRN 769
               +K +  ETGV  +   D+ T  + A   S++ +++  I+ L           G +Y  
Sbjct:   632 YHLKKLQAETGV-TVSQVDEETFSVFAPTPSAMHEARDFITELCKDDQEQQLEFGAVY-T 689

Query:   770 CEIKSIAPYGVFVEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--G 826
               I  I   GV V++ P     L H ++L    +                     D   G
Sbjct:   690 ATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADG 749

Query:   827 QLRLSRRAL 835
             ++RLSR+ L
Sbjct:   750 RMRLSRKVL 758

 Score = 271 (100.5 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 80/303 (26%), Positives = 151/303 (49%)

Query:    91 SVKIPFGDR--QILVETGHMGRQASG-AVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
             +V +  G R  +++   G +G +    A  ++ G+T +  +      PS PS F PL V+
Sbjct:    46 AVAVDLGSRMRRLVYVKGKLGNKTDNTAYFLSSGDTAVMVTAVSKTKPS-PSQFMPLVVD 104

Query:   148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI-DRPLRPTLIKGFYHETQ-ILSWVLSY 205
             Y+++ +AAGR    + +RE  + D EVL  R+I DR +RP    G++++TQ  ++ +L  
Sbjct:   105 YRQKAAAAGRIPTNYLRREVGSSDKEVLTSRVIADRSIRPLFPAGYFYDTQYFVNRILFQ 164

Query:   206 DGLHFPDXXXXXXXXXXXXXSEVPNSKVIAG-VRVGLVGDKFIVNPTTQEMEDSQLDLLL 264
             +   +                 +     I G VR+G++  + +VNPT +EM  S L+L++
Sbjct:   165 NNEPYALMLINRKTVLLCNKDVLWALNTILGAVRIGMIDGECVVNPTRKEMSSSTLNLVV 224

Query:   265 AGSDDA-ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DTIKL 322
             AG+  + I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     +  
Sbjct:   225 AGAPKSQIVMMEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKEIGVTKRTPQKLFT 284

Query:   323 PPPELYKHVEEIAGEELVKVLQI--KNKIPRRKALSSLEEKVLTILSENGYVSKDETVGI 380
             P PE+ +H+ ++  E L  V      +KI R +A++ +       L E     + +T  I
Sbjct:   285 PSPEIVEHIHKLTMERLYAVFTDYEHDKISRDEAINKIRLDTEEQLKEK--FPEADTYEI 342

Query:   381 VET 383
             +E+
Sbjct:   343 IES 345


>WB|WBGene00015266 [details] [associations]
            symbol:BE0003N10.1 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004654
            "polyribonucleotide nucleotidyltransferase activity" evidence=IEA]
            [GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] InterPro:IPR003029 InterPro:IPR012162
            InterPro:IPR015848 Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50126
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
            eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
            PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
            GeneTree:ENSGT00390000014001 EMBL:FO080241 RefSeq:NP_497324.3
            UniGene:Cel.33878 ProteinModelPortal:Q965N3 SMR:Q965N3 PaxDb:Q965N3
            EnsemblMetazoa:BE0003N10.1 GeneID:175269 KEGG:cel:CELE_BE0003N10.1
            UCSC:BE0003N10.1 CTD:175269 WormBase:BE0003N10.1 InParanoid:Q965N3
            OMA:PWNGPVX NextBio:887466 Uniprot:Q965N3
        Length = 738

 Score = 606 (218.4 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
 Identities = 156/426 (36%), Positives = 226/426 (53%)

Query:   431 FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITL 490
             +  +  K LR   +  G R DGR  D  RPI+    +  + HG ++F RG+TQ ++ +T 
Sbjct:   316 YSTLVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTF 375

Query:   491 GDKQMAQRIDN---LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALE 547
                  A   D+   L      K F L Y FP  ++ E G   + +RREIGHG LAE++L+
Sbjct:   376 DSPAAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLK 435

Query:   548 PVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDT 607
              + P+D  FPY  R+   + ESNGSSSMASVCGG LAL DAGVP+K + AGVA+G++  +
Sbjct:   436 NLFPAD--FPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLI--S 491

Query:   608 DEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQA 667
             DE   +    +L+DI G ED +GDMDFKVAG  DG TA Q+D+K GG+T   + ++LQ A
Sbjct:   492 DEAEPETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAA 551

Query:   668 KDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVE 727
             + G  H+L +M      P        P+I  M+++P K   +  + G   K I  ETGV+
Sbjct:   552 RAGIDHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVK 611

Query:   728 AIDTEDDGTVKITAKDLSSLEKSKAII-----SNLTMVPTVGDIYRNCEIKSIAPYGVFV 782
              I  ED+  + + A+D   L+K+  ++     SN T+    G I +  EI  I   GV++
Sbjct:   612 -ISAEDEAHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQ-AEIVEIIERGVYL 669

Query:   783 EIAPGREGLCHISE--LSSNWLAKAEXXXXXXXXXXXXXIEVNDK--GQLRLSRRALLPE 838
              + PG      +S   LS N +   +                 D+  G +RLSR+ L   
Sbjct:   670 TL-PGSSRRIFMSNNHLSLNPVRHPDVLGLKIGDKMSVHWFGRDEHTGNIRLSRKTL--- 725

Query:   839 ADAENP 844
             A A+ P
Sbjct:   726 AGAKTP 731

 Score = 217 (81.4 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
 Identities = 80/279 (28%), Positives = 129/279 (46%)

Query:    91 SVKIPF-GDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
             SV + F G   I ++ GH+ R AS  V  + G+  +  +V             PL V Y+
Sbjct:    27 SVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSGVPLQVEYR 86

Query:   150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
                SA GR    F +RE    D+E+L+ R IDR +RP L+ G  +ETQI+   L+ D   
Sbjct:    87 PSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRP-LLPGNSYETQIICKPLALDENA 145

Query:   210 FPDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLV--GDKFIVNPTTQEMEDSQLDLLLA-G 266
                             S    +  +A +RV     GD F VNPT +E+ ++ L+L++A  
Sbjct:   146 DQIMLGINAASTALQISSAAYNGPLAALRVARTARGD-FHVNPTQEELREASLNLIVAMR 204

Query:   267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP-P 325
               +  +MIE      S E L  A+ V   A R ++   +A+ ++  +PK  D +      
Sbjct:   205 KHEKTVMIELDGRESSAEHLEHALDV---AFRHVAKLHEAMEQLTAEPK--DELASEDFS 259

Query:   326 ELYKHVEEIAGEELVKVLQIK--NKIPRRKALSSLEEKV 362
              L + +EE A E +  V+     +KI R   + ++ E++
Sbjct:   260 GLERLLEETARERIYYVITDAGHDKISRDMEIKAIFEEI 298

 Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query:   344 QIKNKIPRRKALSSLEEKVLTILSENGYVSK 374
             Q K  +P  +++     K +T+   NGY  K
Sbjct:   572 QFKPTVPIIQSMRIEPHKRVTLFRNNGYNCK 602


>UNIPROTKB|H7BZ02 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
            evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
            GO:GO:0006396 GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AC015982
            GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
            TIGRFAMs:TIGR03591 HGNC:HGNC:23166 ProteinModelPortal:H7BZ02
            SMR:H7BZ02 Ensembl:ENST00000402246 Bgee:H7BZ02 Uniprot:H7BZ02
        Length = 537

 Score = 399 (145.5 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 89/208 (42%), Positives = 125/208 (60%)

Query:   422 FSEVD-VKLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F E D  +++  F  V  +  R  ++   +R DGR    +R +S    +    HGSALF 
Sbjct:   328 FPEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQ 387

Query:   479 RGETQSLAVITLGDKQMAQRIDN-LESDDEVK--RFYLQYSFPPSSVGEVGRIGAPSRRE 535
             RG+TQ L  +T    +   + D  + + + +K   F L Y FPP +  E+G++   +RRE
Sbjct:   388 RGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRE 447

Query:   536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
             +GHG LAE+AL PV+P   DFP+TIRV S + ESNGSSSMAS CGG LAL D+GVPI  +
Sbjct:   448 LGHGALAEKALYPVIP--RDFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSA 505

Query:   596 IAGVAMGMVLDTDEFGGDGTPL-ILSDI 622
             +AGVA+G+V  TD   G+     +L+DI
Sbjct:   506 VAGVAIGLVTKTDPEKGEIEDYRLLTDI 533

 Score = 385 (140.6 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 82/272 (30%), Positives = 153/272 (56%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             +V +  G+R++ + +G + R A G+  V  G+T +  +      PS PS F PL V+Y++
Sbjct:    46 AVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PSQFMPLVVDYRQ 104

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             + +AAGR    + +RE  T D E+L  R+IDR +RP    G++++TQ+L  +L+ DG++ 
Sbjct:   105 KAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNE 164

Query:   211 PDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
             PD             S++P +  +  VR+G++  +++VNPT +EM  S L+L++AG+  +
Sbjct:   165 PDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKS 224

Query:   271 -ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML-DTIKLPPPELY 328
              I+M+E   + + ++    A++VG    ++I   ++ LV+  G  K     +  P PE+ 
Sbjct:   225 QIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIV 284

Query:   329 KHVEEIAGEELVKVLQI--KNKIPRRKALSSL 358
             K+  ++A E L  V      +K+ R +A++ +
Sbjct:   285 KYTHKLAMERLYAVFTDYEHDKVSRDEAVNKI 316


>RGD|1307987 [details] [associations]
            symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
            species:10116 "Rattus norvegicus" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000957
            "mitochondrial RNA catabolic process" evidence=ISO] [GO:0000958
            "mitochondrial mRNA catabolic process" evidence=ISO] [GO:0000962
            "positive regulation of mitochondrial RNA catabolic process"
            evidence=ISO] [GO:0000964 "mitochondrial RNA 5'-end processing"
            evidence=ISO] [GO:0000965 "mitochondrial RNA 3'-end processing"
            evidence=ISO] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO]
            [GO:0005758 "mitochondrial intermembrane space" evidence=ISO]
            [GO:0005886 "plasma membrane" evidence=ISO] [GO:0006401 "RNA
            catabolic process" evidence=ISO] [GO:0006402 "mRNA catabolic
            process" evidence=ISO] [GO:0008266 "poly(U) RNA binding"
            evidence=ISO] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            [GO:0034599 "cellular response to oxidative stress" evidence=ISO]
            [GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
            response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
            into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
            mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
            respiration" evidence=ISO] [GO:0043631 "RNA polyadenylation"
            evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
            [GO:0045926 "negative regulation of growth" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
            "positive regulation of mRNA catabolic process" evidence=ISO]
            [GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
            "mitochondrion morphogenesis" evidence=ISO] [GO:0071042 "nuclear
            polyadenylation-dependent mRNA catabolic process" evidence=ISO]
            [GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
            "mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
            "positive regulation of miRNA catabolic process" evidence=ISO]
            [GO:2000772 "regulation of cellular senescence" evidence=ISO]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 RGD:1307987 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
            GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
            GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
            GO:GO:0070584 GO:GO:0000958 GO:GO:0071850 GO:GO:0000175
            GO:GO:0043457 GO:GO:0071042 InterPro:IPR022967 SMART:SM00316
            GO:GO:0045025 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014
            GO:GO:2000772 HOGENOM:HOG000218327 GO:GO:0004654 PANTHER:PTHR11252
            HOVERGEN:HBG053625 GO:GO:0000965 GO:GO:0000964 GO:GO:2000627
            GO:GO:0000962 GO:GO:0035928 UniGene:Rn.23118 EMBL:BC092603
            IPI:IPI00777805 ProteinModelPortal:Q562B9 STRING:Q562B9
            PRIDE:Q562B9 UCSC:RGD:1307987 InParanoid:Q562B9 ArrayExpress:Q562B9
            Genevestigator:Q562B9 Uniprot:Q562B9
        Length = 452

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 157/417 (37%), Positives = 222/417 (53%)

Query:   431 FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITL 490
             F  V  +  R  I+   +R DGR    +R IS    +    HGSALF RG+TQ L  +T 
Sbjct:     8 FNVVAKEVFRSIILNEYKRCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTF 67

Query:   491 GDKQMAQRIDNL-ESDDEVK--RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALE 547
                + + + D +  + + VK   F L Y FPP +  E G++   +RRE+GHG LAE+AL 
Sbjct:    68 DSLESSIKSDQIITAINGVKDKNFMLHYEFPPYATNETGKVTGVNRRELGHGALAEKALC 127

Query:   548 PVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDT 607
             PV+P D  FP+TIRV S + ESNGSSSMAS CGG LAL DAGVPI  ++AGVA+G+V  +
Sbjct:   128 PVIPKD--FPFTIRVTSEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKS 185

Query:   608 DEFGGDGTPL-ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQ 666
             +   G+     +L+DI G ED +GDMDFK+AG   GITA Q DIK+ G+ + ++ +A+QQ
Sbjct:   186 NPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPVKIIMEAIQQ 245

Query:   667 AKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGV 726
             A   +R IL  M K    P  S  ++ P++  +KV   K    IG GG  +K +  ETGV
Sbjct:   246 ATVAKREILQTMSKTISKPRASRKENGPVVETVKVPLSKRAKFIGPGGYHLKKLQAETGV 305

Query:   727 EAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT-----VGDIYRNCEIKSIAPYGVF 781
               I   D+ T  I A   +++ +++  I+ +           G +Y    I  I   GV 
Sbjct:   306 -TISQVDEETFSIFAPTPTAMHEARDFITEICRDDQEQQLEFGAVY-TATITEIRDTGVM 363

Query:   782 VEIAPGREG-LCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDK--GQLRLSRRAL 835
             V++ P     L H S+L    +                     D   G++RLSR+ L
Sbjct:   364 VKLYPNMTAVLLHNSQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 420


>TAIR|locus:2065165 [details] [associations]
            symbol:DUF5 "AT2G47220" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
            evidence=ISS] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] GO:GO:0005634 GO:GO:0009570 EMBL:CP002685
            InterPro:IPR020568 SUPFAM:SSF54211 InterPro:IPR007930 Pfam:PF05266
            IPI:IPI00546959 RefSeq:NP_182244.2 UniGene:At.48604
            ProteinModelPortal:F4IL21 SMR:F4IL21 PRIDE:F4IL21
            EnsemblPlants:AT2G47220.1 GeneID:819335 KEGG:ath:AT2G47220
            Uniprot:F4IL21
        Length = 469

 Score = 394 (143.8 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
 Identities = 77/92 (83%), Positives = 83/92 (90%)

Query:    87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
             P  VSVKIPFG+R+ILVETG MGRQAS AVTVTDGETI++TSVCLADVPSEPSDF PL V
Sbjct:    17 PNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYV 76

Query:   147 NYQERFSAAGRTSGGFFKREGRTKDHEV-LVC 177
             +YQERFSA GRTSGGFFKREGRTKDHEV  +C
Sbjct:    77 HYQERFSAVGRTSGGFFKREGRTKDHEVTFLC 108

 Score = 49 (22.3 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query:   315 KMLDTIKLPPPELY-----KH-VEEIAGEELVKVLQIKNKIPR-RKALSSLEEK 361
             K+L+ +K+   E+      KH  E+  GE   K+L++KNK+   +K  ++LE++
Sbjct:   390 KILEELKVFDKEMKDESSKKHKAEQEFGEMERKILEVKNKVLELQKQEAALEKQ 443


>UNIPROTKB|I3LEL9 [details] [associations]
            symbol:LOC100737729 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0006402 "mRNA catabolic process" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR012162 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0003723 GO:GO:0006402 InterPro:IPR020568
            SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654
            PANTHER:PTHR11252 GeneTree:ENSGT00390000014001 EMBL:FP236371
            Ensembl:ENSSSCT00000024635 OMA:RHIMVET Uniprot:I3LEL9
        Length = 242

 Score = 307 (113.1 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 63/186 (33%), Positives = 108/186 (58%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             +V +  G R++ + +G + R A G+  V  G+T +  +      PS PS F PL V+Y++
Sbjct:    46 TVAVDLGSRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PSQFMPLVVDYRQ 104

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             + +AAGR    + +RE  + D E+L  R+IDR +RP    G++++TQIL  +L+ DG++ 
Sbjct:   105 KAAAAGRIPTNYLRREIGSSDKEILTSRVIDRSIRPLFPAGYFYDTQILCNLLAVDGVNE 164

Query:   211 PDXXXXXXXXXXXXXSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
             PD             S++P +  I  VR+G++  + +VNPT +EM  S L+L++ G+  +
Sbjct:   165 PDVLAINGASVALSLSDIPWNGPIGAVRIGMIDGECVVNPTRKEMSSSTLNLVVTGAPKS 224

Query:   271 -ILMIE 275
              IL +E
Sbjct:   225 QILPLE 230


>UNIPROTKB|F1SQL0 [details] [associations]
            symbol:PNPT1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006402 "mRNA catabolic process" evidence=IEA]
            [GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
            InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
            PROSITE:PS50126 SMART:SM00322 InterPro:IPR015847 GO:GO:0003723
            GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 SUPFAM:SSF55666 GO:GO:0004654
            PANTHER:PTHR11252 GeneTree:ENSGT00390000014001 EMBL:FP236371
            Ensembl:ENSSSCT00000009196 OMA:ITEIRNC Uniprot:F1SQL0
        Length = 250

 Score = 235 (87.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 69/220 (31%), Positives = 103/220 (46%)

Query:   624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
             G ED  GDMDFK+AG   GITA Q DIK+ GI + ++ +A+QQA   ++ IL  M K  P
Sbjct:     1 GIEDYHGDMDFKIAGTAKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTIP 60

Query:   684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
              P  S  ++ P++  ++V   K    +G GG  +K +  ETGV  I   D+ T  I A  
Sbjct:    61 KPRASRKENGPVVETVQVPLSKRAKFVGPGGYHLKKLQAETGV-TISQVDEETFSIFAPT 119

Query:   744 LSSLEKSKAIISNLTMVPT-----VGDIYRNCEIKSIAPYGVFVEIAPGREG-LCHISEL 797
              S++ ++K  I+ +           G +Y    I  I   GV V++ P     L H ++L
Sbjct:   120 PSAMHEAKDFITEICKDDQEQQLEFGAVY-TATITEIRDTGVMVKLYPNMTAVLLHNTQL 178

Query:   798 SSNWLAKAEXXXXXXXXXXXXXIEVNDK--GQLRLSRRAL 835
                 +                     D   G++RLSR+ L
Sbjct:   179 DQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVL 218


>UNIPROTKB|H7BXF6 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0006402 "mRNA
            catabolic process" evidence=IEA] InterPro:IPR012162
            InterPro:IPR001247 Pfam:PF01138 GO:GO:0003723 GO:GO:0006402
            InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC015982 GO:GO:0004654
            PANTHER:PTHR11252 HGNC:HGNC:23166 ProteinModelPortal:H7BXF6
            SMR:H7BXF6 PRIDE:H7BXF6 Ensembl:ENST00000260604 Bgee:H7BXF6
            Uniprot:H7BXF6
        Length = 179

 Score = 228 (85.3 bits), Expect = 8.1e-18, P = 8.1e-18
 Identities = 44/122 (36%), Positives = 75/122 (61%)

Query:    91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
             +V +  G+R++ + +G + R A G+  V  G+T +  +      PS PS F PL V+Y++
Sbjct:    46 AVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-PSQFMPLVVDYRQ 104

Query:   151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
             + +AAGR    + +RE  T D E+L  R+IDR +RP    G++++TQ+L  +L+ DG++ 
Sbjct:   105 KAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNE 164

Query:   211 PD 212
             PD
Sbjct:   165 PD 166


>RGD|1310986 [details] [associations]
            symbol:Exosc4 "exosome component 4" species:10116 "Rattus
            norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
            "nuclear-transcribed mRNA catabolic process" evidence=ISO]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0017091 "AU-rich element binding"
            evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
            evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
            evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
            [GO:0051607 "defense response to virus" evidence=IEA;ISO]
            [GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
            [GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
            [GO:0004532 "exoribonuclease activity" evidence=ISO]
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
            GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
            GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
            GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
            Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
            UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
            GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
            Uniprot:D4A4Y0
        Length = 245

 Score = 153 (58.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 61/226 (26%), Positives = 100/226 (44%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R I +R G+  +A GSA   +G T++LAV+  G  ++         D 
Sbjct:    11 GYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGSRSRALPDR 69

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
              +     QYS    S GE  R     R+    G    +  E  + +       I +   +
Sbjct:    70 ALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQV 127

Query:   567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
              +++G +  A V    LA+ DAG+P++  +   + G V        DGT L  +D++  E
Sbjct:   128 LQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV--------DGTAL--ADLSHVE 177

Query:   627 DASGDMDFKVA--GNEDGITAFQMDIKVGGITLP-VMKKALQQAKD 669
             +A+G     +A       I   +MD ++    L  V++ A Q A+D
Sbjct:   178 EAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARD 223


>MGI|MGI:1923576 [details] [associations]
            symbol:Exosc4 "exosome component 4" species:10090 "Mus
            musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
            "nuclear-transcribed mRNA catabolic process" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
            [GO:0030307 "positive regulation of cell growth" evidence=ISO]
            [GO:0035327 "transcriptionally active chromatin" evidence=ISO]
            [GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
            response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
            surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
            process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
            MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
            GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
            KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
            GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
            HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
            Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
            RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
            SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
            PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
            KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
            Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
            GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
        Length = 245

 Score = 152 (58.6 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 62/235 (26%), Positives = 103/235 (43%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R I +R G+  +A GSA   +G T++LAV+  G  ++         D 
Sbjct:    11 GYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGSRSRALPDR 69

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
              +     QYS    S GE  R     R+    G    +  E  + +       I +   +
Sbjct:    70 ALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQV 127

Query:   567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
              +++G +  A V    LA+ DAG+P++  +   + G V        DGT L  +D++  E
Sbjct:   128 LQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV--------DGTAL--ADLSHVE 177

Query:   627 DASGDMDFKVA--GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEML 679
             +A+G     +A       I   +MD ++    L  + +A  QA  G  H L +++
Sbjct:   178 EAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGV-HTLLDLV 231


>UNIPROTKB|Q9NPD3 [details] [associations]
            symbol:EXOSC4 "Exosome complex component RRP41"
            species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
            activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
            [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
            processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
            process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
            "DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] [GO:0035327 "transcriptionally active
            chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
            evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
            process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
            evidence=IMP] [GO:0030307 "positive regulation of cell growth"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
            "defense response to virus" evidence=IMP] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
            metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
            nuclear-transcribed mRNA catabolic process involved in
            deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
            GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
            GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
            CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
            OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
            SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
            EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
            ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
            PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
            PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
            Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
            GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
            neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
            PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
            NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
            Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
        Length = 245

 Score = 151 (58.2 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 62/226 (27%), Positives = 99/226 (43%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R I +R G+  +A GSA   +G T++LAV+    +    R   L    
Sbjct:    11 GYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRA 70

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
              V     QYS    S GE  R     R+    G    +  E  + +       I +   +
Sbjct:    71 LVN---CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQV 127

Query:   567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
              +++G +  A V    LA+ DAG+P++  +   + G V        DGT L  +D++  E
Sbjct:   128 LQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV--------DGTAL--ADLSHVE 177

Query:   627 DASGDMDFKVA--GNEDGITAFQMDIKVGGITLP-VMKKALQQAKD 669
             +A+G     +A       I   +MD ++    L  V++ A Q A+D
Sbjct:   178 EAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARD 223


>TAIR|locus:2076710 [details] [associations]
            symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
            evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
            InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
            HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
            HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
            IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
            UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
            STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
            EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
            KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
            PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
            Genevestigator:Q9SP08 Uniprot:Q9SP08
        Length = 241

 Score = 150 (57.9 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 58/237 (24%), Positives = 110/237 (46%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR  + +R I +  G++ +A GSA+F  G T+ +A +  G +++  +    ++D 
Sbjct:     8 GLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV-YGPREIQNKSQQKKNDH 66

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYT-IRVEST 565
              V     +YS    S G+  R     RR      +  + +E  + ++   P++ I +   
Sbjct:    67 AV--VLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACILTEL-MPHSQIDIFLQ 122

Query:   566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
             + +++G +  A +    LAL DAG+P++      + G +        + TPL+  D+   
Sbjct:   123 VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYL--------NSTPLL--DLNYV 172

Query:   626 EDASGDMDFKVA--GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
             ED++G  D  V      D ++  QMD K   + +   +     A +G + I AE ++
Sbjct:   173 EDSAGGADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAI-AERIR 225


>UNIPROTKB|F1RSL0 [details] [associations]
            symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
            [GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
            "defense response to virus" evidence=IEA] [GO:0045006 "DNA
            deamination" evidence=IEA] [GO:0035327 "transcriptionally active
            chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
            growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
            "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
            complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
            GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
            GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
            SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
            UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
            KEGG:ssc:100511875 Uniprot:F1RSL0
        Length = 245

 Score = 149 (57.5 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 62/226 (27%), Positives = 100/226 (44%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R I +R G+  +A GSA   +G T++LAV+  G  ++         D 
Sbjct:    11 GYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGSRSRALPDR 69

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
              +     QYS    S GE  R     R+    G    +A E  + +       I +   +
Sbjct:    70 ALVN--CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQV 127

Query:   567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
              +++G    A V    LA+ DAG+P++  +   + G V        DGT L  +D++  E
Sbjct:   128 LQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFV--------DGTAL--ADLSHVE 177

Query:   627 DASGDMDFKVA--GNEDGITAFQMDIKVGGITLP-VMKKALQQAKD 669
             +A+G     +A       I   +MD ++    L  V++ A Q A+D
Sbjct:   178 EAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARD 223


>UNIPROTKB|Q7YRA3 [details] [associations]
            symbol:EXOSC4 "Exosome complex component RRP41"
            species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
            evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
            evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
            [GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
            "transcriptionally active chromatin" evidence=IEA] [GO:0030307
            "positive regulation of cell growth" evidence=IEA] [GO:0017091
            "AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
            5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
            evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
            GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
            InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
            KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
            IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
            ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
            Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
            eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
            HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
            NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
            Uniprot:Q7YRA3
        Length = 245

 Score = 144 (55.7 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 60/226 (26%), Positives = 99/226 (43%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R I +R G+  +A GSA   +G T++LAV+    +    R   L    
Sbjct:    11 GYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRA 70

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
              V     QYS    S GE  R     R+    G    +  E  + +       I +   +
Sbjct:    71 LVN---CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQV 127

Query:   567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
              +++G +  A V    LA+ DAG+P++  +   + G V        DGT L  +D++  E
Sbjct:   128 LQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV--------DGTAL--ADLSHVE 177

Query:   627 DASGDMDFKVA--GNEDGITAFQMDIKVGGITLP-VMKKALQQAKD 669
             +A+G     +A       I   +MD ++    L  V++ A + ++D
Sbjct:   178 EAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRD 223


>UNIPROTKB|E2RIM3 [details] [associations]
            symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
            evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
            "DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
            active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
            cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
            "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
            complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
            Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
            GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
            GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
            CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
            Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
            Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
            NextBio:20856762 Uniprot:E2RIM3
        Length = 245

 Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 60/226 (26%), Positives = 98/226 (43%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R I +R G+  +A GSA   +G T++LAV+    +    R   L    
Sbjct:    11 GYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRA 70

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
              V     QYS    S GE  R     R+    G    +  E  + +       I +   +
Sbjct:    71 LVN---CQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQV 127

Query:   567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
              +++G +  A V    LA+ DAG+P++  +   + G V        D T L  +D++  E
Sbjct:   128 LQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV--------DNTAL--ADLSHVE 177

Query:   627 DASGDMDFKVA--GNEDGITAFQMDIKVGGITLP-VMKKALQQAKD 669
             +A+G     +A       I   +MD ++    L  V++ A + A+D
Sbjct:   178 EAAGGPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARD 223


>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
            symbol:exosc4 "exosome component 4" species:7955
            "Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
            InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
            SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
            HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
            EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
            UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
            KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
        Length = 245

 Score = 137 (53.3 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 58/224 (25%), Positives = 98/224 (43%)

Query:   447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
             G R DGR A  +R + +R  +  +A GSA   +G T++LAV+    +    R  +L  D 
Sbjct:    11 GYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLH-DR 69

Query:   507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYT-IRVEST 565
              +     QYS    S  E  R     R+        ++  E  + ++  +P + I +   
Sbjct:    70 AI--INCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTEL-YPRSQIDIYVK 126

Query:   566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
             I +++G +  A V    LAL DAG+P++  +   + G V DT        PL  +D+  +
Sbjct:   127 ILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDT--------PL--ADLCHA 176

Query:   626 EDASGDMDFKVA--GNEDGITAFQMDIKVGGITLPVMKKALQQA 667
             E++ G     +A       I   QMD ++    L  + +A   A
Sbjct:   177 EESGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTA 220


>WB|WBGene00007201 [details] [associations]
            symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0010171 "body morphogenesis"
            evidence=IMP] [GO:0040018 "positive regulation of multicellular
            organism growth" evidence=IMP] InterPro:IPR001247
            InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
            GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
            GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
            eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
            OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
            RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
            STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
            GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
            WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
            ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
            Uniprot:Q17533
        Length = 240

 Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 57/187 (30%), Positives = 86/187 (45%)

Query:   443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL-AVITLGDKQMAQRIDN 501
             I E G R DGR    IR I++R GL   A GS     G T+ L AV    + + ++RI+ 
Sbjct:     4 ISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIE- 62

Query:   502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYT-I 560
                 D+      QYS    S  E        R+      L E+A E V+ ++  FP + +
Sbjct:    63 ----DKCA-IVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEA-FPRSQL 116

Query:   561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
              +   + + +GS+  A V    LAL DAG+P+K   +    G+V        DG P++  
Sbjct:   117 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVV--------DGKPIV-- 166

Query:   621 DITGSED 627
             D+T  E+
Sbjct:   167 DLTSREE 173


>UNIPROTKB|Q17533 [details] [associations]
            symbol:exos-4.1 "Putative exosome complex component RRP41"
            species:6239 "Caenorhabditis elegans" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
            GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
            GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
            SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
            GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
            Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
            RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
            STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
            GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
            WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
            ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
            Uniprot:Q17533
        Length = 240

 Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 57/187 (30%), Positives = 86/187 (45%)

Query:   443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSL-AVITLGDKQMAQRIDN 501
             I E G R DGR    IR I++R GL   A GS     G T+ L AV    + + ++RI+ 
Sbjct:     4 ISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIE- 62

Query:   502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYT-I 560
                 D+      QYS    S  E        R+      L E+A E V+ ++  FP + +
Sbjct:    63 ----DKCA-IVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEA-FPRSQL 116

Query:   561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
              +   + + +GS+  A V    LAL DAG+P+K   +    G+V        DG P++  
Sbjct:   117 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVV--------DGKPIV-- 166

Query:   621 DITGSED 627
             D+T  E+
Sbjct:   167 DLTSREE 173


>TAIR|locus:2075351 [details] [associations]
            symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
            thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
            [GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
            [GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
            Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
            InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
            HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
            EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
            EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
            RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
            RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
            ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
            PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
            EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
            EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
            EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
            TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
            Genevestigator:Q9LX74 Uniprot:Q9LX74
        Length = 239

 Score = 127 (49.8 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 39/145 (26%), Positives = 73/145 (50%)

Query:   449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
             R DGR  + +RP++    +L R HGSA +++G+T+ LA +  G K   ++ +N E     
Sbjct:     5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAV-YGPKAGTKKNENAE----- 58

Query:   509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
             K  + +  + P S G++G++      E  +  + +R ++ +     +   T  V   +  
Sbjct:    59 KACF-EVIWKPKS-GQIGKV------EKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVH 110

Query:   569 SNGSSSMASVCGGCLALQDAGVPIK 593
              +GS    ++   C AL DAG+P+K
Sbjct:   111 DDGSLLPCAINAACAALVDAGIPMK 135


>UNIPROTKB|H7C3C5 [details] [associations]
            symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
            mitochondrial" species:9606 "Homo sapiens" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004654 "polyribonucleotide
            nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
            evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
            InterPro:IPR001247 Pfam:PF01138 GO:GO:0003723 GO:GO:0006396
            GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
            EMBL:AC015982 GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252
            SUPFAM:SSF46915 HGNC:HGNC:23166 ProteinModelPortal:H7C3C5
            Ensembl:ENST00000415489 Uniprot:H7C3C5
        Length = 139

 Score = 102 (41.0 bits), Expect = 0.00024, P = 0.00024
 Identities = 29/100 (29%), Positives = 47/100 (47%)

Query:   422 FSEVD-VKLV--FKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
             F E D  +++  F  V  +  R  ++   +R DGR    +R +S    +    HGSALF 
Sbjct:    20 FPEADPYEIIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQ 79

Query:   479 RGETQSLAVITLGDKQMAQRIDN-LESDDEVK--RFYLQY 515
             RG+TQ L  +T    +   + D  + + + +K   F L Y
Sbjct:    80 RGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHY 119


>ZFIN|ZDB-GENE-050522-362 [details] [associations]
            symbol:exosc6 "exosome component 6" species:7955
            "Danio rerio" [GO:0000178 "exosome (RNase complex)"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR001247 Pfam:PF01138
            ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
            GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
            HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
            HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
            RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
            STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
            KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
            KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
            Bgee:Q6P0I8 Uniprot:Q6P0I8
        Length = 271

 Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
 Identities = 42/146 (28%), Positives = 71/146 (48%)

Query:   458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
             +RP+ +RCGL+ +A GSA    G T+ +  +  G K+  +R D  E+D +  R    +  
Sbjct:    42 VRPVFARCGLVSQAKGSAYIEAGNTKIICSV-YGPKETERR-D--ETDMKTGRLVCDFRL 97

Query:   518 PPSSVGEVGR-IGAPSRREIGHGTLAERALEPVLPSDNDFPYT-IRVESTITESNGSSSM 575
              P S  + G  I     R++   TL E +L P +     +P + I V   + E++GS   
Sbjct:    98 APFSCVKRGAWIQGSEERDLS-ATLME-SLRPGVCLHR-YPRSQIDVNVMVLENDGSVLA 154

Query:   576 ASVCGGCLALQDAGVPIKCSIAGVAM 601
              +V    +AL DAG+ +   + G  +
Sbjct:   155 HAVTCASMALADAGIEMYDIVLGCTL 180


>UNIPROTKB|Q724J5 [details] [associations]
            symbol:LMOf2365_0229 "RNA-binding protein" species:265669
            "Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
            PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
            GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
            HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
            STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
            KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
        Length = 142

 Score = 102 (41.0 bits), Expect = 0.00073, P = 0.00073
 Identities = 36/132 (27%), Positives = 59/132 (44%)

Query:   771 EIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEXXXXXXXXXXXXXIEVNDKGQLRL 830
             ++  I  +G FVE+  G+ GL HISE++ N++                 + + D G++ L
Sbjct:    12 KVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNIGDDGKIGL 71

Query:   831 S-RRAL----LPEADAENPPV--KLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKK 883
             S R+A+     PE   +  P   K P G+  K A + + ++ S   K S    T +  K+
Sbjct:    72 SIRKAVDRPDRPEKSYDRKPKYSKKPAGNYVKPAESFEDIM-SKFLKDSDERLTTI--KR 128

Query:   884 VKVFKRPASPAK 895
                 KR    AK
Sbjct:   129 QTESKRGGRGAK 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      916       843   0.00081  122 3  11 23  0.44    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  51
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  357 KB (2177 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  74.95u 0.10s 75.05t   Elapsed:  00:00:03
  Total cpu time:  74.96u 0.10s 75.06t   Elapsed:  00:00:03
  Start:  Tue May 21 05:31:59 2013   End:  Tue May 21 05:32:02 2013

Back to top