BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002487
(916 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 948
Score = 1410 bits (3651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/935 (76%), Positives = 801/935 (85%), Gaps = 26/935 (2%)
Query: 1 MLAT-SPGGLHIRPCYPHSS---HFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSR 56
MLA S LH P +P +S S++ RCKL LS NCPRF S SKF SLSLLL
Sbjct: 1 MLANPSTSSLHTIPYHPQTSPSFSNSITTRCKLFLSPNCPRFIHSS-FSKFPSLSLLLPC 59
Query: 57 RKYSERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAV 116
++ ERFS RA PE++E V+ D FPQ VSVKIPFGDR ILVETGH GRQASG+V
Sbjct: 60 KR-GERFSARA-LEDPEITESVIVDGPQFFPQAVSVKIPFGDRHILVETGHTGRQASGSV 117
Query: 117 TVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLV 176
VTDGETI+YT+VCL DVPSEPSDFFPL+VNYQERFSAAGRTSGGFFKREGR KDHEVL+
Sbjct: 118 MVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRAKDHEVLI 177
Query: 177 CRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAG 236
CRLIDRPLRPT++KGFYHETQILSWVLSYDGLH DALAVTAAGIAVALSEVP +K IAG
Sbjct: 178 CRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSSDALAVTAAGIAVALSEVPTTKAIAG 237
Query: 237 VRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDA 296
VRVGLVGDKFIVNPTT+EME+S+LDL++AG+D AILMIEGYC+FL EE L++AVQVGQDA
Sbjct: 238 VRVGLVGDKFIVNPTTKEMEESKLDLVMAGTDSAILMIEGYCNFLPEEKLLEAVQVGQDA 297
Query: 297 VREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALS 356
VR I NEV ALV+ CGKPKM D IKLPPPELYKHV+EIAG+ELV VLQI+NKIPRRKALS
Sbjct: 298 VRAICNEVDALVKKCGKPKMHDAIKLPPPELYKHVKEIAGDELVNVLQIRNKIPRRKALS 357
Query: 357 SLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRK 416
SLEEKV++IL+E G+VSKD + G ET+ DLLE+E+EDEE VVDGEVDEGD+HIKP SRK
Sbjct: 358 SLEEKVISILTEEGFVSKDTSFGTTETVADLLEEEEEDEEFVVDGEVDEGDIHIKPVSRK 417
Query: 417 STPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSAL 476
S+P+L+SEVDVKLVFKEVTS+FLRRRIVEGG+RSDGR ADGIRPI+SRCGLLPRAHGSAL
Sbjct: 418 SSPLLYSEVDVKLVFKEVTSQFLRRRIVEGGKRSDGRNADGIRPINSRCGLLPRAHGSAL 477
Query: 477 FTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREI 536
FTRGETQSLAV TLGDKQMAQ++DNL DE KRFYLQYSFPPSSVGEVGR+GAPSRREI
Sbjct: 478 FTRGETQSLAVATLGDKQMAQKVDNLVDVDEFKRFYLQYSFPPSSVGEVGRMGAPSRREI 537
Query: 537 GHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSI 596
GHG LAERALEP+LPS+ DFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVP+KCSI
Sbjct: 538 GHGMLAERALEPILPSEADFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSI 597
Query: 597 AGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGIT 656
AG+AMGMVLDT+EFGGDGTPLILSDITGSEDASGDMDFKVAGNEDG+TAFQMDIKVGGIT
Sbjct: 598 AGIAMGMVLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGIT 657
Query: 657 LPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKK 716
LPVM++AL QA+DGR+HILAEMLKCSP PS LSKHAPLIH+MKV P+K+N+IIGSGGKK
Sbjct: 658 LPVMRRALLQARDGRKHILAEMLKCSPSPSKRLSKHAPLIHMMKVDPQKVNMIIGSGGKK 717
Query: 717 VKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIA 776
V+SIIEETGVEAIDT+DDGT+KITAKDLSSLEKSK+IISNLTMVPTVGDIYRNCEIK+IA
Sbjct: 718 VRSIIEETGVEAIDTDDDGTIKITAKDLSSLEKSKSIISNLTMVPTVGDIYRNCEIKTIA 777
Query: 777 PYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
PYGVFVEIAPGREGLCHISEL+S+WLAKAED KVGD VDVKLIEVN+KGQL+LSR+ALL
Sbjct: 778 PYGVFVEIAPGREGLCHISELTSSWLAKAEDAFKVGDRVDVKLIEVNEKGQLKLSRKALL 837
Query: 837 PEADAENPPVKLPTGDPTKDAAASDKL-------------VGSPK----PKGSSSEDTVL 879
PE ENP K D K S K+ SP+ PK ++ E+T +
Sbjct: 838 PEPTVENPDGKTTDKDYPKGTVNSSKVGITEAKIEQLKGDTSSPEVATSPKSNAVENTPV 897
Query: 880 PHKKVKVFKRPASPAKDRPYSNKDRTKKSSGKAVS 914
P K K++KR S K+ P +NKDR KK K VS
Sbjct: 898 PQK--KIYKRTISSTKNGPNTNKDRPKKGGNKVVS 930
>gi|449437763|ref|XP_004136660.1| PREDICTED: probable polyribonucleotide nucleotidyltransferase 1,
chloroplastic-like [Cucumis sativus]
Length = 922
Score = 1316 bits (3405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/929 (73%), Positives = 764/929 (82%), Gaps = 28/929 (3%)
Query: 1 MLATSPGGLHIRPCYPHSSHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYS 60
MLA +P GLH +PCY H+S FS K+SLSS CPRF S KS+ F SLSLL S+ K +
Sbjct: 1 MLA-NPCGLHFKPCYSHTSEFSHFGTSKISLSSYCPRFHGSTKSN-FSSLSLLRSK-KSA 57
Query: 61 ERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD 120
+R +A + SD P +P SVKIP GDR ILVETGH+GRQAS AVTVTD
Sbjct: 58 KRLVTKALSESSVPDSVAASDEAPGSLRPFSVKIPVGDRHILVETGHIGRQASSAVTVTD 117
Query: 121 GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI 180
GETI+YT+VCLAD PSEPSDFFPL+VNYQERFSAAGRTSGGFFKREGR +DHEVL+CRLI
Sbjct: 118 GETIVYTTVCLADTPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRARDHEVLICRLI 177
Query: 181 DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVG 240
DRP+RPT++KGFYHETQILSWVLSYDGLH PD LA+TAAGIAVALSEVPNS+ +AGVR+G
Sbjct: 178 DRPIRPTMLKGFYHETQILSWVLSYDGLHTPDCLAITAAGIAVALSEVPNSQAVAGVRIG 237
Query: 241 LVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREI 300
LVGDKFIVNPTT+EME+S+LDL+LAG+D AILMIEGYC+FLSEEML+QA+++GQ+AV I
Sbjct: 238 LVGDKFIVNPTTKEMENSELDLVLAGTDSAILMIEGYCNFLSEEMLLQAIEIGQNAVTAI 297
Query: 301 SNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEE 360
EV +LV GKPKMLD I+LPPP LYKHVEEIAG EL KVLQI+NKIPRRKALSSLEE
Sbjct: 298 CKEVDSLVRERGKPKMLDAIRLPPPLLYKHVEEIAGNELEKVLQIRNKIPRRKALSSLEE 357
Query: 361 KVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPM 420
KV+TIL+E GYVS D T G +E IPDL+EDEDED+ VV + DVHIKP +RK P
Sbjct: 358 KVITILTEEGYVSLDTTSGGLEPIPDLVEDEDEDDVVVDGEVDEG-DVHIKPTTRKPIPT 416
Query: 421 LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRG 480
LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR IRPI+S+ GLLPRAHGS LFTRG
Sbjct: 417 LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRTPVEIRPINSKSGLLPRAHGSTLFTRG 476
Query: 481 ETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGT 540
ETQSLAV+TLGD+QMAQR+DNL DE+KRFYLQYSFPPS VGE GRIGAPSRREIGHG
Sbjct: 477 ETQSLAVVTLGDRQMAQRVDNLVDVDELKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGM 536
Query: 541 LAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVA 600
LAERALEP LPS++DFPYTIRVESTITESNGSSSMASVCGG LALQDAGVPIKC IAG+A
Sbjct: 537 LAERALEPSLPSEDDFPYTIRVESTITESNGSSSMASVCGGSLALQDAGVPIKCPIAGIA 596
Query: 601 MGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM 660
MG+VLDT EFGGDGTPLILSDITGSEDASGDMDFK+AGNE GITAFQMDIKVGGIT+P+M
Sbjct: 597 MGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNEMGITAFQMDIKVGGITIPIM 656
Query: 661 KKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSI 720
++AL QAKDGR+HILAEML PPPS LS +APLIH+MKV+PEKINLIIG+GGKKVKSI
Sbjct: 657 REALLQAKDGRKHILAEMLNSYPPPSKRLSPYAPLIHVMKVQPEKINLIIGTGGKKVKSI 716
Query: 721 IEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGV 780
IEETGVEAIDT DDG VKITAKDL+SLEKSKAIISNLTMVPT+GDIYRNCEIK+IA YG
Sbjct: 717 IEETGVEAIDTRDDGIVKITAKDLTSLEKSKAIISNLTMVPTIGDIYRNCEIKTIAAYGA 776
Query: 781 FVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
FVEIAPGREGLCHISELSS+WLAKAED KVGD +DVKLIEVN+KGQLRLSRRALLP+AD
Sbjct: 777 FVEIAPGREGLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDAD 836
Query: 841 AENPPVKLPTGDPTKDAAASDKLV--------------------GSPKPKGSSSEDTVLP 880
++ K T +P+++ A K G P S ED
Sbjct: 837 -QDSNSKENTSNPSRNKTAMQKGADKGTSKKAGKENIEETNVQKGGAAPTSGSLEDAAKL 895
Query: 881 HKKVKVFKRPASPAKDRPYSNKDRTKKSS 909
K K ++ + K+RP S K++TK +S
Sbjct: 896 QK--KFIRKGVTVTKERPIS-KEQTKSTS 921
>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
Length = 942
Score = 1316 bits (3405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/896 (77%), Positives = 770/896 (85%), Gaps = 16/896 (1%)
Query: 26 RCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPEVSE--PVLSDAL 83
R +L LS N R S + K S L S F VRA A + SE P +A
Sbjct: 16 RWRLPLSCNLHR---SLRPKKAPRSSSSLLFSSKSCSFGVRALAES-QASEINPSSVEAP 71
Query: 84 PSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFP 143
P QP SVKIP GDR ILVETGH+GRQASG+VTVTDGETI+YTSVCLADVPSEPSDFFP
Sbjct: 72 PGVAQPFSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFP 131
Query: 144 LNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVL 203
L+VNYQERFSAAGRTSGGFFKREGRTKDHEVL+CRLIDRPLRPT++KGFYHETQILSWVL
Sbjct: 132 LSVNYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVL 191
Query: 204 SYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLL 263
SYDGLH PD+LAVTAAGIAVALSE+P SK +AGVRVG+VG+KFI+NPTT+EMEDS+LDLL
Sbjct: 192 SYDGLHSPDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLL 251
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+D AILMIEGYC+FL EE L+QAV+VGQDAVR I NEV+AL + GKPKMLD IKLP
Sbjct: 252 VAGTDSAILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGKPKMLDAIKLP 311
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
PPELY+HVEEIAG++L KVLQI+NKIPRRKAL SLEE+VLTIL+E GYVSKDET+G ET
Sbjct: 312 PPELYRHVEEIAGQQLGKVLQIRNKIPRRKALISLEEEVLTILTEEGYVSKDETLGTAET 371
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
I DL EDEDEDEEVVVDGEVDEGDVHIKP RKS+P+ FSEVDVKLVFKEVTSKFLRRRI
Sbjct: 372 IQDLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRI 431
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
VEGG+RSDGR DGIR I+S+CGLLPRAHGSALFTRGETQSLAV+TLGD+QMAQRIDNL
Sbjct: 432 VEGGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLV 491
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
DE+KRFYLQYSFPPS VGEVGR+GAPSRREIGHG LAERALEP+LPS++DFPYTIRVE
Sbjct: 492 DVDELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVE 551
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
STITESNGSSSMASVCGGCLALQDAGVP+K SIAG+AMGMVL+T+EFGGDGTPLILSDIT
Sbjct: 552 STITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDIT 611
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
GSEDASGDMDFKVAG EDGITAFQMDIKVGGITLP+MK+AL QAKDGR+ ILAEM KCSP
Sbjct: 612 GSEDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSP 671
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P+ LSK+APLIHIMKVKPEKIN+IIG GGKKVKSIIEETGVEAIDT+DDG VKITAKD
Sbjct: 672 LPAKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKD 731
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
L+SLEKSK IIS+LTMVPTVGDIYRNCEIKSIAPYGVFVEIA GREGLCHISELS +WLA
Sbjct: 732 LTSLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLA 791
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKL 863
K ED KVGD +DVKLIE+NDKGQLRLSR+ALLP A+ E P +K T +K+ AAS K
Sbjct: 792 KTEDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKPSLKQRTS--SKENAASQK- 848
Query: 864 VGSPKPKGSSSEDTVLPHKKV----KVFKRPASPAKDRPYSNKDRTKKSSGKAVSS 915
+P KG++ + +P + K+ KR S +D P +NK+R KKS KAV+S
Sbjct: 849 --APD-KGTTKKAVNMPKDGLGEVNKIIKRLVSSGRDEPDTNKERPKKSISKAVTS 901
>gi|449494763|ref|XP_004159640.1| PREDICTED: LOW QUALITY PROTEIN: probable polyribonucleotide
nucleotidyltransferase 1, chloroplastic-like [Cucumis
sativus]
Length = 922
Score = 1314 bits (3401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/929 (72%), Positives = 763/929 (82%), Gaps = 28/929 (3%)
Query: 1 MLATSPGGLHIRPCYPHSSHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYS 60
MLA +P GLH +PCY H+S FS K+SLSS CPRF S KS+ F SLSLL S+ K +
Sbjct: 1 MLA-NPCGLHFKPCYSHTSEFSHFGTSKISLSSYCPRFHGSTKSN-FSSLSLLRSK-KSA 57
Query: 61 ERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD 120
+R +A + SD P +P SVKIP GDR ILVETGH+GRQAS AVTVTD
Sbjct: 58 KRLVTKALSESSVPDSVAASDEAPGSLRPFSVKIPVGDRHILVETGHIGRQASSAVTVTD 117
Query: 121 GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI 180
GETI+YT+VCLAD PSEPSDFFPL+VNYQERFSAAGRTSGGFFKREGR +DHEVL+CRLI
Sbjct: 118 GETIVYTTVCLADTPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRARDHEVLICRLI 177
Query: 181 DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVG 240
DRP+RPT++KGFYHETQILSWVLSYDGLH PD LA+TAAGIAVALSEVPNS+ +AGVR+G
Sbjct: 178 DRPIRPTMLKGFYHETQILSWVLSYDGLHTPDCLAITAAGIAVALSEVPNSQAVAGVRIG 237
Query: 241 LVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREI 300
LVGDKFIVNPTT+EME+S+LDL+LAG+D AILMIEGYC+FLSEEML+QA+++GQ+AV I
Sbjct: 238 LVGDKFIVNPTTKEMENSELDLVLAGTDSAILMIEGYCNFLSEEMLLQAIEIGQNAVTAI 297
Query: 301 SNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEE 360
EV +LV GKPKMLD I+LPPP LYKHVEEIAG EL KVLQI+NKIPRRKALSSLEE
Sbjct: 298 CKEVDSLVRERGKPKMLDAIRLPPPLLYKHVEEIAGNELEKVLQIRNKIPRRKALSSLEE 357
Query: 361 KVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPM 420
KV+TIL+E GYVS D T G +E IPDL+EDEDED+ VV + DVHIKP +RK P
Sbjct: 358 KVITILTEEGYVSLDTTSGGLEPIPDLVEDEDEDDVVVDGEVDEG-DVHIKPTTRKPIPT 416
Query: 421 LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRG 480
LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR IRPI+S+ GLLPRAHGS LFTRG
Sbjct: 417 LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRTPVEIRPINSKSGLLPRAHGSTLFTRG 476
Query: 481 ETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGT 540
ETQSLAV+TLGD+QMAQR+DNL DE+KRFYLQYSFPPS VGE GRIGAPSRREIGHG
Sbjct: 477 ETQSLAVVTLGDRQMAQRVDNLVDVDELKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGM 536
Query: 541 LAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVA 600
LAERALEP LPS++DFPYTIRVESTITESNGSSSMASVCGG LALQDAGVPIKC IAG+A
Sbjct: 537 LAERALEPSLPSEDDFPYTIRVESTITESNGSSSMASVCGGSLALQDAGVPIKCPIAGIA 596
Query: 601 MGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM 660
MG+VLDT EFGGDGTPLILSDITGSEDASGDMDFK+AGNE GITAFQMDIKVGGIT+P+M
Sbjct: 597 MGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNEMGITAFQMDIKVGGITIPIM 656
Query: 661 KKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSI 720
++AL QAKDGR+HILAEML PPP LS +APLIH+MKV+PEKINLIIG+GGKKVKSI
Sbjct: 657 REALLQAKDGRKHILAEMLNSYPPPXKRLSPYAPLIHVMKVQPEKINLIIGTGGKKVKSI 716
Query: 721 IEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGV 780
IEETGVEAIDT DDG VKITAKDL+SLEKSKAIISNLTMVPT+GDIYRNCEIK+IA YG
Sbjct: 717 IEETGVEAIDTRDDGIVKITAKDLTSLEKSKAIISNLTMVPTIGDIYRNCEIKTIAAYGA 776
Query: 781 FVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
FVEIAPGREGLCHISELSS+WLAKAED KVGD +DVKLIEVN+KGQLRLSRRALLP+AD
Sbjct: 777 FVEIAPGREGLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDAD 836
Query: 841 AENPPVKLPTGDPTKDAAASDKLV--------------------GSPKPKGSSSEDTVLP 880
++ K T +P+++ A K G P S ED
Sbjct: 837 -QDSNSKENTSNPSRNKTAMQKGADKGTSKKAGKENIEETNVQKGGAAPTSGSLEDAAKL 895
Query: 881 HKKVKVFKRPASPAKDRPYSNKDRTKKSS 909
K K ++ + K+RP S K++TK +S
Sbjct: 896 QK--KFIRKGVTVTKERPIS-KEQTKSTS 921
>gi|225439207|ref|XP_002270169.1| PREDICTED: polyribonucleotide nucleotidyltransferase [Vitis
vinifera]
Length = 946
Score = 1312 bits (3395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/924 (75%), Positives = 770/924 (83%), Gaps = 43/924 (4%)
Query: 26 RCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPEVSE--PVLSDAL 83
R +L LS N R S + K S L S F VRA A + SE P +A
Sbjct: 16 RWRLPLSCNLHR---SLRPKKAPRSSSSLLFSSKSCSFGVRALAES-QASEINPSSVEAP 71
Query: 84 PSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFP 143
P QP SVKIP GDR ILVETGH+GRQASG+VTVTDGETI+YTSVCLADVPSEPSDFFP
Sbjct: 72 PGVAQPFSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPSEPSDFFP 131
Query: 144 LNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVL 203
L+VNYQERFSAAGRTSGGFFKREGRTKDHEVL+CRLIDRPLRPT++KGFYHETQILSWVL
Sbjct: 132 LSVNYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVL 191
Query: 204 SYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLL 263
SYDGLH PD+LAVTAAGIAVALSE+P SK +AGVRVG+VG+KFI+NPTT+EMEDS+LDLL
Sbjct: 192 SYDGLHSPDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTTKEMEDSELDLL 251
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+D AILMIEGYC+FL EE L+QAV+VGQDAVR I NEV+AL + GKPKMLD IKLP
Sbjct: 252 VAGTDSAILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYGKPKMLDAIKLP 311
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
PPELY+HVEEIAG++L KVLQI+NKIPRRKAL SLEE+VLTIL+E GYVSKDET+G ET
Sbjct: 312 PPELYRHVEEIAGQQLGKVLQIRNKIPRRKALISLEEEVLTILTEEGYVSKDETLGTAET 371
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
I DL EDEDEDEEVVVDGEVDEGDVHIKP RKS+P+ FSEVDVKLVFKEVTSKFLRRRI
Sbjct: 372 IQDLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFKEVTSKFLRRRI 431
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
VEGG+RSDGR DGIR I+S+CGLLPRAHGSALFTRGETQSLAV+TLGD+QMAQRIDNL
Sbjct: 432 VEGGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLV 491
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
DE+KRFYLQYSFPPS VGEVGR+GAPSRREIGHG LAERALEP+LPS++DFPYTIRVE
Sbjct: 492 DVDELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVE 551
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
STITESNGSSSMASVCGGCLALQDAGVP+K SIAG+AMGMVL+T+EFGGDGTPLILSDIT
Sbjct: 552 STITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGGDGTPLILSDIT 611
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
GSEDASGDMDFKVAG EDGITAFQMDIKVGGITLP+MK+AL QAKDGR+ ILAEM KCSP
Sbjct: 612 GSEDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRKQILAEMSKCSP 671
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P+ LSK+APLIHIMKVKPEKIN+IIG GGKKVKSIIEETGVEAIDT+DDG VKITAKD
Sbjct: 672 LPAKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKD 731
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
L+SLEKSK IIS+LTMVPTVGDIYRNCEIKSIAPYGVFVEIA GREGLCHISELS +WLA
Sbjct: 732 LTSLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLCHISELSPSWLA 791
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDK- 862
K ED KVGD +DVKLIE+NDKGQLRLSR+ALLP A+ E P +K T +K+ AAS K
Sbjct: 792 KTEDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKPSLKQRTS--SKENAASQKA 849
Query: 863 ---------------------------LVGSPKPKGS----SSEDTVLPHKKVKVFKRPA 891
+PKP S S+E LP K+ KR
Sbjct: 850 PDKGTTKKAVNMPKDGLGEVNVELSNDTSSNPKPVSSHTTNSAEGDALPQ---KIIKRLV 906
Query: 892 SPAKDRPYSNKDRTKKSSGKAVSS 915
S +D P +NK+R KKS KAV+S
Sbjct: 907 SSGRDEPDTNKERPKKSISKAVTS 930
>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
Length = 853
Score = 1297 bits (3356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/827 (80%), Positives = 731/827 (88%), Gaps = 11/827 (1%)
Query: 79 LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP 138
++D S PQP+SVKIP GDR I+VETGH+GRQASG+VTVTDGETIIYTSVCL DVPSEP
Sbjct: 6 VNDGPQSLPQPISVKIPVGDRHIMVETGHLGRQASGSVTVTDGETIIYTSVCLDDVPSEP 65
Query: 139 SDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQI 198
SDF+PL+VNYQERFSAAGRTSGGFFKREGR KDHEVL+CRLIDRPLRPT++KGFYHETQI
Sbjct: 66 SDFYPLSVNYQERFSAAGRTSGGFFKREGRLKDHEVLICRLIDRPLRPTMLKGFYHETQI 125
Query: 199 LSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDS 258
LSWVLSYDGLH PD+LAVTAAGIA+ALSEVPN+KVIAGVRVGLV +KFIVNPTT+EME+S
Sbjct: 126 LSWVLSYDGLHSPDSLAVTAAGIALALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEES 185
Query: 259 QLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLD 318
+LDLLLAG+D AI MIEGYC+FL EE L++AVQ+GQDAVR I NEV ALV+ CGKPKMLD
Sbjct: 186 KLDLLLAGTDSAIFMIEGYCNFLPEEKLLEAVQIGQDAVRTICNEVNALVKKCGKPKMLD 245
Query: 319 TIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETV 378
IKLPPPELYKH+EEIAG+ELVKVLQI+NK+PRRKAL SLEEKVL+IL+E GYVSKD++
Sbjct: 246 AIKLPPPELYKHMEEIAGDELVKVLQIRNKVPRRKALQSLEEKVLSILTEKGYVSKDQSF 305
Query: 379 GIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKF 438
GI ET+ DLLE E+EDEEVVVDGEVDEGDVHIKP R+S+P LFSEVDVKLVFKEVTSKF
Sbjct: 306 GIPETVADLLEVEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLFSEVDVKLVFKEVTSKF 365
Query: 439 LRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQR 498
LRRRIVEGG+RSDGR +GIRPI S CGLLPRAHGSALFTRGETQSLAV+TLGDKQMAQR
Sbjct: 366 LRRRIVEGGKRSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQR 425
Query: 499 IDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY 558
+DNL ++E KRFYLQYSFPPS VGEVGRIGAPSRREIGHG LAERALEP+LPS+NDFPY
Sbjct: 426 VDNLVDEEEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDFPY 485
Query: 559 TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLI 618
T+RVESTITESNGSSSMASVCGGCLALQDAGVP+KC IAG+AMGMVLDT+EFGGDGTPLI
Sbjct: 486 TVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPLI 545
Query: 619 LSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEM 678
LSDITGSEDASGDMDFKVAGNEDG+TAFQMDIKVGGITLPVM+ AL QA+DGR+HILAEM
Sbjct: 546 LSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRTALLQARDGRKHILAEM 605
Query: 679 LKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVK 738
LKCSP PS LSK+APLIHIMKV PEK+N+IIGSGGKKVKSIIEETGVEAIDT+DDG VK
Sbjct: 606 LKCSPSPSKRLSKYAPLIHIMKVNPEKVNIIIGSGGKKVKSIIEETGVEAIDTQDDGIVK 665
Query: 739 ITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELS 798
ITAKDLSS+EKS +IIS LTMVP VGDIY+NCEIKS+APYGVFVEIAPG EGLCHISELS
Sbjct: 666 ITAKDLSSIEKSISIISQLTMVPAVGDIYKNCEIKSVAPYGVFVEIAPGHEGLCHISELS 725
Query: 799 SNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT---- 854
SNWL KAED KVGD VDVKLIEVN KGQLRLSR+ALLPE +E + D T
Sbjct: 726 SNWLPKAEDAFKVGDRVDVKLIEVNGKGQLRLSRKALLPEVTSEKSSAEQQARDLTEGNT 785
Query: 855 ---KDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRP 898
KD + K V K S ED P K K +KR S A+D P
Sbjct: 786 EQSKDKSRDTKFVNPTKV--DSVEDA--PLSKKKAYKRLTSSARDGP 828
>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
Length = 897
Score = 1267 bits (3279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/757 (81%), Positives = 688/757 (90%), Gaps = 4/757 (0%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q S+KIP GDR LVETGHMGRQASG+VTVTDGETI+YT+VCL D PSEPSDFFPL+VN
Sbjct: 85 QKHSLKIPVGDRHTLVETGHMGRQASGSVTVTDGETIVYTTVCLNDTPSEPSDFFPLSVN 144
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQERFSAAGRTSGGFFKREG+TKDHEVL+CRLIDRPLRPT+ KGFYHETQILSWVLSYDG
Sbjct: 145 YQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDG 204
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
H PDALA+TAAGIA+ALSE+P SK +AGVRVGL+GDK+IVNPT +EME+S+LDL+LAG+
Sbjct: 205 SHAPDALAITAAGIALALSEIPTSKAVAGVRVGLIGDKYIVNPTAEEMENSELDLMLAGT 264
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D AILMIEGY +FL EE L++AV+VGQDAVR I NEV+ALV+ CGKPKM+D IKLPPPEL
Sbjct: 265 DSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAIKLPPPEL 324
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDET-VGIVETIPD 386
YKHVEEIAG+ELVKVLQI+NKIPRRKALSSLEE+VL IL+ENG+V + T ETI +
Sbjct: 325 YKHVEEIAGDELVKVLQIRNKIPRRKALSSLEERVLKILTENGFVIDESTPRSNAETIAE 384
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+LEDEDE EV+VDGEVDEGDVHIKP RK TP LFSEVDVKLVFKEVTSKFLR+RIVEG
Sbjct: 385 ILEDEDE--EVIVDGEVDEGDVHIKPTPRKPTP-LFSEVDVKLVFKEVTSKFLRKRIVEG 441
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+RSDGR IRPI+S C +LPRAHGSALFTRGETQ+LAV TLGD +MAQRI+NL D
Sbjct: 442 GKRSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVD 501
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ KRFYLQYSFPPS VGE GRIGAPSRREIGHG LAER+LE +LPSDNDFPYTIRVESTI
Sbjct: 502 DYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTI 561
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLALQDAGVPIKCSIAG+AMG+VLDT EFGGDGTPLILSDITGSE
Sbjct: 562 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSE 621
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DASGDMDFKVAGNEDGITAFQMDIKV GITLP+M++AL QA+DGR+HIL EM+K PPP+
Sbjct: 622 DASGDMDFKVAGNEDGITAFQMDIKVAGITLPIMREALLQARDGRKHILGEMMKSLPPPA 681
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LSK+APLIH+MKV+P+KINLIIGSGGKKVKSIIE++G+EAIDTED+GTV+I AKDL+S
Sbjct: 682 KRLSKYAPLIHVMKVRPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVRIFAKDLAS 741
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEKSKAIIS+LTMVP +GDIYRNCEIKSI PYGVFVEIAPGREGLC+ISELSS WLAKAE
Sbjct: 742 LEKSKAIISSLTMVPNIGDIYRNCEIKSIVPYGVFVEIAPGREGLCYISELSSGWLAKAE 801
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
DV KVGD +DVKL E+N+KGQLRLS RALLP+AD++N
Sbjct: 802 DVFKVGDHIDVKLTEINEKGQLRLSHRALLPDADSDN 838
>gi|356570339|ref|XP_003553347.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Glycine max]
Length = 916
Score = 1264 bits (3272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/846 (77%), Positives = 730/846 (86%), Gaps = 19/846 (2%)
Query: 1 MLATSPGGLH-IRPCYPHS--SHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRR 57
MLA LH + HS SHF LS PR + S K + FRSL +RR
Sbjct: 1 MLACPSSSLHGLTTLQRHSQPSHFLLSKPLFF------PRLAASHKCN-FRSLLSGNNRR 53
Query: 58 KYSERFSVRASATGPEVSEPV-LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAV 116
R +VRASA PEV E V + D QP SVKIP GDR ILVET H+GRQASG+V
Sbjct: 54 ----RSAVRASADSPEVPESVGVGDG--GGLQPYSVKIPVGDRHILVETAHIGRQASGSV 107
Query: 117 TVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLV 176
TVTDGETI+YT+VCL DVP EPSDFFPL+V YQERFSAAGRTSGGFFKREG+ KDHEVL+
Sbjct: 108 TVTDGETIVYTTVCLDDVPCEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLI 167
Query: 177 CRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAG 236
CRLIDRPLRPT+ KGFYHETQILSWVLSYDGLH PD+LA+TAAGIAVALSEVP SK +AG
Sbjct: 168 CRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAG 227
Query: 237 VRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDA 296
VRVGLVGDK+IVNPTT+EME S+LDLLLAG+D+AILMIEGY +FL EE L++AV+VGQ+A
Sbjct: 228 VRVGLVGDKYIVNPTTEEMEHSELDLLLAGTDNAILMIEGYSNFLPEEKLLKAVEVGQNA 287
Query: 297 VREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALS 356
VR I NEV+ALV+ CGKPKMLD IKLPPPELY+HVE IA +ELVKVLQI+NKIPRRKALS
Sbjct: 288 VRAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEAIASDELVKVLQIRNKIPRRKALS 347
Query: 357 SLEEKVLTILSENGYVSKDETV-GIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSR 415
SLEEKVL IL+ENG+VS D T+ ETI ++LE EDEDEEV+VDGEVDEGDVHIKP R
Sbjct: 348 SLEEKVLKILTENGFVSNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPR 407
Query: 416 KSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSA 475
K +LFSEVDVKLVFKEVTSK+ R+R+VEGG+RSDGR DGIRPI SRCGLLPRAHGS
Sbjct: 408 KPA-LLFSEVDVKLVFKEVTSKYWRKRMVEGGKRSDGRTPDGIRPIYSRCGLLPRAHGST 466
Query: 476 LFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRRE 535
LFTRGETQ+LAV+TLGDKQMAQRID+L+ DE KRFYLQYSFPPS VGEVGRIGAPSRRE
Sbjct: 467 LFTRGETQALAVVTLGDKQMAQRIDSLDGVDEFKRFYLQYSFPPSCVGEVGRIGAPSRRE 526
Query: 536 IGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCS 595
IGHG LAER+LEP+LPS++DFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIK S
Sbjct: 527 IGHGMLAERSLEPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKGS 586
Query: 596 IAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGI 655
IAG+AMGMVLDT EFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGI
Sbjct: 587 IAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGI 646
Query: 656 TLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGK 715
TLP+M+KAL QA+DGR+HIL M+ SPPP+ LSK+APLIH+MKV+P++INLIIGSGGK
Sbjct: 647 TLPIMRKALLQARDGRKHILGAMMNSSPPPAKRLSKYAPLIHVMKVRPDRINLIIGSGGK 706
Query: 716 KVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSI 775
KVKSIIEE+GV+ IDTEDDGTVKI AKDL SLEKSKAII++LTMVPT+GDIYR+CEIKSI
Sbjct: 707 KVKSIIEESGVDTIDTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIYRSCEIKSI 766
Query: 776 APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
A YGVFVEIAPGREGLCHISELSS WL KAEDV KVGD +DVKLIE+N+KGQLRLS RAL
Sbjct: 767 ASYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINEKGQLRLSHRAL 826
Query: 836 LPEADA 841
LP+ +A
Sbjct: 827 LPDTEA 832
>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
Length = 922
Score = 1261 bits (3263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/910 (72%), Positives = 745/910 (81%), Gaps = 23/910 (2%)
Query: 17 HSS--HFSLSARCKLSLSSNCPRF----STSQKSSKFRSLSLLLSRRKYSERFSVRASAT 70
HSS HF R +L S N PRF +S K LSLL + + +FSVRA
Sbjct: 10 HSSTPHFWPVRRSRLCRSRNFPRFHSGERSSGGGGKLCPLSLLSA--SGASKFSVRALVR 67
Query: 71 GPEVSEPV--LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTS 128
P+V+E + D +FP VSVKIPFG+R+ILVETG MGRQAS AVTVTDGETI+YTS
Sbjct: 68 -PDVTEDADSVGDGSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTS 126
Query: 129 VCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTL 188
VCLADVPSEPSDF PL V+YQERFSA GRTSGGFFKREGRTKDHEVL+CRLIDRPLRPT+
Sbjct: 127 VCLADVPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTM 186
Query: 189 IKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIV 248
KGFY+ETQILSWVLSYDGLH PDALAVT+AGIAVALSEVPN+K IAGVRVGL+G +FIV
Sbjct: 187 PKGFYNETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIV 246
Query: 249 NPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALV 308
NPT +EME+SQLDL LAG+D AIL IEGY +FL EEML++AV+VGQDAV+ ++ L
Sbjct: 247 NPTVKEMEESQLDLFLAGTDTAILTIEGYSNFLPEEMLLEAVKVGQDAVQATCIAIEVLA 306
Query: 309 EMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSE 368
+ GKPKMLD I+LPPPELYKHV+E+AGEEL K LQIK+KI RRKA+SSLEEKVLTIL+E
Sbjct: 307 KKYGKPKMLDAIRLPPPELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTE 366
Query: 369 NGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVK 428
GYV + G +E PDLLEDEDEDEEVV +GEVD+GDVHI+P RK P+LFSEVDVK
Sbjct: 367 KGYVIDEVAFGTIEAQPDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVK 426
Query: 429 LVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVI 488
LVFKEV+SK LRRRIVEGG+RSDGR D IRPI+SRCGLLPRAHGS LFTRGETQ+LAV+
Sbjct: 427 LVFKEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVV 486
Query: 489 TLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEP 548
TLGDKQMAQRIDNLE DE KRFYLQY+FPPSSVGEVGRIGAPSRREIGHGTLAERALE
Sbjct: 487 TLGDKQMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALET 546
Query: 549 VLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTD 608
+LPSD+DFPYTIRVEST+ ESNGSSSMASVCGGCLALQDAGVP+KCS+AG+AMGMV DT+
Sbjct: 547 ILPSDDDFPYTIRVESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTE 606
Query: 609 EFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAK 668
EFGGDG+PLILSDITG+EDASGDMDFKVAGNEDG+TAFQMDIKVGGITL +M+KAL QAK
Sbjct: 607 EFGGDGSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAK 666
Query: 669 DGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEA 728
GRRHILAEM KCSPPP+ SLSK+APLIHIMKV P K+ +IGSGGKKVKSIIEE+GVEA
Sbjct: 667 AGRRHILAEMAKCSPPPTLSLSKYAPLIHIMKVHPSKVYSLIGSGGKKVKSIIEESGVEA 726
Query: 729 IDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGR 788
ID +DDGTVKI A D++SLE++KAIIS LTMVP VGDIYRNCEIKS+APYG FVEIAPGR
Sbjct: 727 IDMQDDGTVKIMAIDVASLERAKAIISGLTMVPAVGDIYRNCEIKSMAPYGAFVEIAPGR 786
Query: 789 EGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK- 847
EGLCHISELS+ WLAK ED KVGD +DVKLIEVN+KGQLRLS RALLPE++ + K
Sbjct: 787 EGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQ 846
Query: 848 LPTGDPTKDAAASDKLVGSPK--------PKGSSSEDTVLPHKKVKVFKRPASPAKDRPY 899
P GD TKD + K V + K SS ++ VL K V +R + D+
Sbjct: 847 QPAGDSTKDKGSQRKYVNTSSKDRAAAGASKVSSGDELVLKKKDV---RRATGGSSDKTM 903
Query: 900 SNKDRTKKSS 909
+ T + S
Sbjct: 904 KSNSSTNEES 913
>gi|30678905|ref|NP_187021.2| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
gi|75151653|sp|Q8GZQ3.1|PNP1_ARATH RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
chloroplastic; Short=AtcpPNPase; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Protein PIGMENT DEFECTIVE 326; AltName:
Full=Protein RESISTANT TO INHIBITION WITH FSM 10; Flags:
Precursor
gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 922
Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/907 (71%), Positives = 739/907 (81%), Gaps = 17/907 (1%)
Query: 17 HSS--HFSLSARCKLSLSSNCPRF--STSQKSSKFRSLSLLLSRRKYSERFSVRASATGP 72
HSS F R KL S N PRF + SL L + +FSVRA
Sbjct: 10 HSSTPQFWPLRRSKLCRSRNFPRFHSGERSSGGGGKLCSLSLLSGSGAGKFSVRALVRPD 69
Query: 73 EVSEP-VLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCL 131
+ + + D +FP VSVKIPFG+R+ILVETG MGRQAS AVTVTDGETI+YTSVCL
Sbjct: 70 DTDDADSVGDGSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCL 129
Query: 132 ADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKG 191
ADVPSEPSDF PL V+YQERFSA GRTSGGFFKREGRTKDHEVL+CRLIDRPLRPT+ KG
Sbjct: 130 ADVPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKG 189
Query: 192 FYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPT 251
FY+ETQILSWVLSYDGLH PDALAVT+AGIAVALSEVPN+K IAGVRVGL+G +FIVNPT
Sbjct: 190 FYNETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPT 249
Query: 252 TQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMC 311
+EME+SQLDL LAG+D AIL IEGY +FL EEML+QAV+VGQDAV+ ++ L +
Sbjct: 250 VKEMEESQLDLFLAGTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKY 309
Query: 312 GKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGY 371
GKPKMLD I+LPPPELYKHV+E+AGEEL K LQIK+KI RRKA+SSLEEKVLTIL+E GY
Sbjct: 310 GKPKMLDAIRLPPPELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGY 369
Query: 372 VSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVF 431
V + G +E PDLLEDEDEDEEVV +GEVD+GDVHI+P RK P+LFSEVDVKLVF
Sbjct: 370 VIDEVAFGTIEAQPDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVF 429
Query: 432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
KEV+SK LRRRIVEGG+RSDGR D IRPI+SRCGLLPRAHGS LFTRGETQ+LAV+TLG
Sbjct: 430 KEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLG 489
Query: 492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
DKQMAQRIDNLE DE KRFYLQY+FPPSSVGEVGRIGAPSRREIGHGTLAERALE +LP
Sbjct: 490 DKQMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILP 549
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
SD+DFPYTIRVEST+ ESNGSSSMASVCGGCLALQDAGVP+KCS+AG+AMGMV DT+EFG
Sbjct: 550 SDDDFPYTIRVESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFG 609
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
GDG+PLILSDITG+EDASGDMDFKVAGNEDG+TAFQMDIKVGGITL +M+KAL QAK GR
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGR 669
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
RHILAEM KCSPPP+ SLSK+APLI IMKV P K+ +IGSGGKKVKSIIEE+GVEAID
Sbjct: 670 RHILAEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDM 729
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
+DDGTVKI A D++SLE++KAIIS LTMVP+VGDIYRNCEIKS+APYG FVEIAPGREGL
Sbjct: 730 QDDGTVKIMAIDVASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGL 789
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK-LPT 850
CHISELS+ WLAK ED KVGD +DVKLIEVN+KGQLRLS RALLPE++ + K P
Sbjct: 790 CHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQQPA 849
Query: 851 GDPTKDAAASDKLVGSPK--------PKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNK 902
GD TKD ++ K V + K SS ++ VL K V +R + D+ ++
Sbjct: 850 GDSTKDKSSQRKYVNTSSKDRAAAGASKVSSGDELVLKKKDV---RRATGGSSDKTMNSN 906
Query: 903 DRTKKSS 909
T + S
Sbjct: 907 SSTNEES 913
>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 948
Score = 1246 bits (3223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/858 (74%), Positives = 722/858 (84%), Gaps = 13/858 (1%)
Query: 62 RFSVRASATGPEVSEP-VLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD 120
+FSVRA + + + D +FP VSVKIPFG+R+ILVETG MGRQAS AVTVTD
Sbjct: 85 KFSVRALVRPDDTDDADSVGDGSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTD 144
Query: 121 GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI 180
GETI+YTSVCLADVPSEPSDF PL V+YQERFSA GRTSGGFFKREGRTKDHEVL+CRLI
Sbjct: 145 GETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLI 204
Query: 181 DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVG 240
DRPLRPT+ KGFY+ETQILSWVLSYDGLH PDALAVT+AGIAVALSEVPN+K IAGVRVG
Sbjct: 205 DRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVG 264
Query: 241 LVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREI 300
L+G +FIVNPT +EME+SQLDL LAG+D AIL IEGY +FL EEML+QAV+VGQDAV+
Sbjct: 265 LIGGEFIVNPTVKEMEESQLDLFLAGTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQAT 324
Query: 301 SNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEE 360
++ L + GKPKMLD I+LPPPELYKHV+E+AGEEL K LQIK+KI RRKA+SSLEE
Sbjct: 325 CIAIEVLAKKYGKPKMLDAIRLPPPELYKHVKELAGEELTKALQIKSKISRRKAISSLEE 384
Query: 361 KVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPM 420
KVLTIL+E GYV + G +E PDLLEDEDEDEEVV +GEVD+GDVHI+P RK P+
Sbjct: 385 KVLTILTEKGYVIDEVAFGTIEAQPDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPL 444
Query: 421 LFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRG 480
LFSEVDVKLVFKEV+SK LRRRIVEGG+RSDGR D IRPI+SRCGLLPRAHGS LFTRG
Sbjct: 445 LFSEVDVKLVFKEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRG 504
Query: 481 ETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGT 540
ETQ+LAV+TLGDKQMAQRIDNLE DE KRFYLQY+FPPSSVGEVGRIGAPSRREIGHGT
Sbjct: 505 ETQALAVVTLGDKQMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGT 564
Query: 541 LAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVA 600
LAERALE +LPSD+DFPYTIRVEST+ ESNGSSSMASVCGGCLALQDAGVP+KCS+AG+A
Sbjct: 565 LAERALETILPSDDDFPYTIRVESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIA 624
Query: 601 MGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM 660
MGMV DT+EFGGDG+PLILSDITG+EDASGDMDFKVAGNEDG+TAFQMDIKVGGITL +M
Sbjct: 625 MGMVWDTEEFGGDGSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIM 684
Query: 661 KKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSI 720
+KAL QAK GRRHILAEM KCSPPP+ SLSK+APLI IMKV P K+ +IGSGGKKVKSI
Sbjct: 685 EKALIQAKAGRRHILAEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSI 744
Query: 721 IEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGV 780
IEE+GVEAID +DDGTVKI A D++SLE++KAIIS LTMVP+VGDIYRNCEIKS+APYG
Sbjct: 745 IEESGVEAIDMQDDGTVKIMAIDVASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGA 804
Query: 781 FVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
FVEIAPGREGLCHISELS+ WLAK ED KVGD +DVKLIEVN+KGQLRLS RALLPE++
Sbjct: 805 FVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESE 864
Query: 841 AENPPVK-LPTGDPTKDAAASDKLVGSPK--------PKGSSSEDTVLPHKKVKVFKRPA 891
+ K P GD TKD ++ K V + K SS ++ VL K V +R
Sbjct: 865 TDKDSQKQQPAGDSTKDKSSQRKYVNTSSKDRAAAGASKVSSGDELVLKKKDV---RRAT 921
Query: 892 SPAKDRPYSNKDRTKKSS 909
+ D+ ++ T + S
Sbjct: 922 GGSSDKTMNSNSSTNEES 939
>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 922
Score = 1244 bits (3218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/907 (71%), Positives = 738/907 (81%), Gaps = 17/907 (1%)
Query: 17 HSS--HFSLSARCKLSLSSNCPRF--STSQKSSKFRSLSLLLSRRKYSERFSVRASATGP 72
HSS F R KL S N PRF + SL L + +FSVRA
Sbjct: 10 HSSTPQFWPLRRSKLCRSRNFPRFHSGERSSGGGGKLCSLSLLSGSGAGKFSVRALVRPD 69
Query: 73 EVSEP-VLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCL 131
+ + + D +FP VSVKIPFG+R+ILVETG MGRQAS AVTVTDGETI+YTSVCL
Sbjct: 70 DTDDADSVGDGSLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCL 129
Query: 132 ADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKG 191
ADVPSEPSDF PL V+YQERFSA GRTSGGFFKREGRTKDHEVL+CRLIDRPLRPT+ KG
Sbjct: 130 ADVPSEPSDFLPLYVHYQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKG 189
Query: 192 FYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPT 251
FY+ETQILSWVLSYDGLH PDALAVT+AGIAVALSEVPN+K IAGVRVGL+G +FIVNPT
Sbjct: 190 FYNETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPT 249
Query: 252 TQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMC 311
+EME+SQLDL LAG+D AIL IEGY +FL EEML+QAV+VGQDAV+ ++ L +
Sbjct: 250 VKEMEESQLDLFLAGTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKY 309
Query: 312 GKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGY 371
GKPKMLD I+LPPPELYKHV+E+AGEEL K LQIK+KI RRKA+S LEEKVLTIL+E GY
Sbjct: 310 GKPKMLDAIRLPPPELYKHVKELAGEELTKALQIKSKISRRKAISPLEEKVLTILTEKGY 369
Query: 372 VSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVF 431
V + G +E PDLLEDEDEDEEVV +GEVD+GDVHI+P RK P+LFSEVDVKLVF
Sbjct: 370 VIDEVAFGTIEAQPDLLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVF 429
Query: 432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
KEV+SK LRRRIVEGG+RSDGR D IRPI+SRCGLLPRAHGS LFTRGETQ+LAV+TLG
Sbjct: 430 KEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLG 489
Query: 492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
DKQMAQRIDNLE DE KRFYLQY+FPPSSVGEVGRIGAPSRREIGHGTLAERALE +LP
Sbjct: 490 DKQMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILP 549
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
SD+DFPYTIRVEST+ ESNGSSSMASVCGGCLALQDAGVP+KCS+AG+AMGMV DT+EFG
Sbjct: 550 SDDDFPYTIRVESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFG 609
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
GDG+PLILSDITG+EDASGDMDFKVAGNEDG+TAFQMDIKVGGITL +M+KAL QAK GR
Sbjct: 610 GDGSPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGR 669
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
RHILAEM KCSPPP+ SLSK+APLI IMKV P K+ +IGSGGKKVKSIIEE+GVEAID
Sbjct: 670 RHILAEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDM 729
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
+DDGTVKI A D++SLE++KAIIS LTMVP+VGDIYRNCEIKS+APYG FVEIAPGREGL
Sbjct: 730 QDDGTVKIMAIDVASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGL 789
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK-LPT 850
CHISELS+ WLAK ED KVGD +DVKLIEVN++GQLRLS RALLPE++ + K P
Sbjct: 790 CHISELSAEWLAKPEDAYKVGDRIDVKLIEVNEEGQLRLSVRALLPESETDKDSQKQQPA 849
Query: 851 GDPTKDAAASDKLVGSPK--------PKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNK 902
GD TKD ++ K V + K SS ++ VL K V +R + D+ ++
Sbjct: 850 GDSTKDKSSQRKYVNTSSKDRAAAGASKVSSGDELVLKKKDV---RRATGGSSDKTMNSN 906
Query: 903 DRTKKSS 909
T + S
Sbjct: 907 SSTNEES 913
>gi|1924972|gb|AAC49669.1| polyribonucleotide phophorylase [Spinacia oleracea]
Length = 822
Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/817 (77%), Positives = 712/817 (87%), Gaps = 9/817 (1%)
Query: 16 PHSSHF--SLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPE 73
PHSS S S CK+ LS++ S + SL LL + ++F+VRA A
Sbjct: 9 PHSSTLPSSHSKNCKILLSASA--LSRYRTFKTLASLHRLLPTNSHGKKFNVRAMAQ-TH 65
Query: 74 VSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLAD 133
VS+ D+L QP SVKIPFGDR ILVETGH+GRQASGAVTVTDGETI+YT+VC++D
Sbjct: 66 VSQKHAHDSL----QPYSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSD 121
Query: 134 VPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFY 193
+PSEPSDFFPL+VNYQERFSAAGRTSGGFFKREGR KD+EVLVCRLIDRPLR T++KGFY
Sbjct: 122 IPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFY 181
Query: 194 HETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQ 253
HETQILSWVLSYDGLH PDALAVTAAGIAVALSE+P++K +AGVRVGLVG K+IVNPTT
Sbjct: 182 HETQILSWVLSYDGLHPPDALAVTAAGIAVALSELPHTKPVAGVRVGLVGGKYIVNPTTN 241
Query: 254 EMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK 313
EME+S+LDL++AG+D AILMIEGYC+FL EE L++AV+VGQDAVR I EV+ALVE CGK
Sbjct: 242 EMENSELDLVVAGTDSAILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGK 301
Query: 314 PKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVS 373
PKM+D IKLPPPELYKHVEEIAG+ELV LQIK K+PRRKAL SLEEKV+ IL++ GYV
Sbjct: 302 PKMIDAIKLPPPELYKHVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVG 361
Query: 374 KDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKE 433
K I ET+PDL DE+EDEEVVVDGEVDEGDVHIKP + TP+LFSEVDVKLVFKE
Sbjct: 362 KSVATVIPETLPDLYVDEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKE 421
Query: 434 VTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDK 493
TSK+LR+RIVEGGRRSDGR ++G+RPI+SRCGLLPRAHGSALFTRGETQ+LAV+TLGDK
Sbjct: 422 TTSKYLRKRIVEGGRRSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDK 481
Query: 494 QMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSD 553
QMAQRID LE DDE KRFYLQYSFPPS VGE GR+GAPSRREIGHGTLAERALEP+LPS+
Sbjct: 482 QMAQRIDTLEGDDESKRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSE 541
Query: 554 NDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGD 613
++FPYT+RVES ITESNGSSSMASVCGG LAL DAGVP+KC IAG+AMGMVLDT EFGGD
Sbjct: 542 DEFPYTVRVESNITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGD 601
Query: 614 GTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRH 673
GTPLILSDITGSEDASGDMDFKVAGN D +TAFQMDIKVGGITL VMK+AL QAKDGR+
Sbjct: 602 GTPLILSDITGSEDASGDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKI 661
Query: 674 ILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTED 733
ILAEM KC PPPS +LS +APLIH+MKV+PEK+NLIIGSGGK V+SIIE TGVEAIDT+D
Sbjct: 662 ILAEMSKCLPPPSKTLSIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQD 721
Query: 734 DGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCH 793
DGTVKITA+DL SLEKSKA+I+NLTMVPT+GDIYRNCEIKSIAPYG FVEIAPGREGLCH
Sbjct: 722 DGTVKITARDLESLEKSKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGLCH 781
Query: 794 ISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRL 830
ISELS ++LAKAED KVGD VDVKLIEVN+KGQL L
Sbjct: 782 ISELSPSYLAKAEDAFKVGDRVDVKLIEVNEKGQLAL 818
>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
gi|75118006|sp|Q69LE7.1|PNP1_ORYSJ RecName: Full=Probable polyribonucleotide nucleotidyltransferase 1,
chloroplastic; AltName: Full=Polynucleotide
phosphorylase 1; Short=PNPase 1; Flags: Precursor
gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
Length = 902
Score = 1215 bits (3143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/778 (76%), Positives = 682/778 (87%), Gaps = 1/778 (0%)
Query: 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
P S KIP GDR ILVETGH+GRQAS +V VTDGETI+Y+SVCLAD P++PSDFFP++V
Sbjct: 87 PTKFSTKIPVGDRHILVETGHIGRQASASVMVTDGETIVYSSVCLADTPNDPSDFFPMSV 146
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER SAAGRTSGGFFKREGR KDHEVLVCRLIDRPLRPT+ KGFY+ETQILSWV SYD
Sbjct: 147 HYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYD 206
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
G+H PD+LA+TAAG+A+ALSEVPN + IAGVRVG++ D+F+VNPTT++M+DS+LDL++AG
Sbjct: 207 GIHSPDSLAITAAGVAMALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAG 266
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+D AILMIEGYCDFL+EE L+QAV+ GQ A+REI + LV+ CGK KM D I LPPPE
Sbjct: 267 TDSAILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKMFDAIDLPPPE 326
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
LY+HVE+I+G+ELVK LQIK KI RRKALS+LEEKV+TILSE GYV+KDE+ G+ E + D
Sbjct: 327 LYRHVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLAD 386
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
++E+EDEDE +V GEVDEG+VHIKP SRK LFSEVDVKLVFKEV+SKFLRRRIVEG
Sbjct: 387 VIEEEDEDEVIVD-GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEG 445
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+RSDGR +RPI+S+CGLLPRAHGSALFTRGETQ+LAV+TLGD QMAQRIDNL +
Sbjct: 446 GKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTE 505
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
E K FYLQY+FPPSSVGEVGRIGAP+RREIGHG LAERALEP+LP + DFPYTIRVESTI
Sbjct: 506 ESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTI 565
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGDG PLILSDITG+E
Sbjct: 566 TESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAE 625
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DASGDMDFKVAGNE+GI+AFQMDIKV GITLP+M+ AL QA+DGR+HIL EM KCSPPP+
Sbjct: 626 DASGDMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPA 685
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS +APLIH+MKVKP K+NLIIGSGGK +KSIIEETGV+AIDT DDGTVKITA+DLSS
Sbjct: 686 KVLSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSS 745
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEKSKAII+NLTMVP VG+IYRNCEIK+IAPYG FVEIAPGREGLCHISELSS+WLAKAE
Sbjct: 746 LEKSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAE 805
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLV 864
D KVGD +DVKLIE+NDKGQLRLS RALLP+A+ E+ + G + A D LV
Sbjct: 806 DAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQESSSKQQAGGSTREKAPQKDNLV 863
>gi|357111469|ref|XP_003557535.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like
[Brachypodium distachyon]
Length = 900
Score = 1211 bits (3133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/823 (72%), Positives = 695/823 (84%), Gaps = 22/823 (2%)
Query: 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
P SVKIP GDR ILVETGH+GRQAS +V VTDGETIIY SVC+AD PS+PSDFFP++V
Sbjct: 85 PTKFSVKIPVGDRHILVETGHIGRQASASVMVTDGETIIYCSVCMADTPSDPSDFFPMSV 144
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER SAAGRTSGGFFKREGR KDHEVLVCRLIDRPLRPT+ KGFY+ETQIL+WV SYD
Sbjct: 145 HYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILAWVFSYD 204
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
G+H PD LAVTAAGIA+ALSEVPN + IAGVR+G++ D+F++NPTT+EM+DS+LDL++AG
Sbjct: 205 GIHSPDCLAVTAAGIAMALSEVPNKQTIAGVRIGMINDQFVINPTTEEMKDSELDLMMAG 264
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+D AILMIEG+CDFL+EE L+QAV+ GQ A+REI + LV+ CGK KM++ I LPPPE
Sbjct: 265 TDSAILMIEGFCDFLTEEKLLQAVETGQVAIREICKAIDVLVQTCGKKKMVEAINLPPPE 324
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
LY+HVE+I+G+ELVK LQIK KIPRRKALS+LEE V+TILSE GYVSKDE+ G++E + D
Sbjct: 325 LYRHVEDISGDELVKALQIKQKIPRRKALSALEENVITILSEQGYVSKDESSGVIENLAD 384
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
++E+EDEDE +V GEVDEG+VHIKP SRK LFSEVDVKLVFKEV+SKFLRRRIV+G
Sbjct: 385 IVEEEDEDEVIVD-GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVQG 443
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+RSDGR +RPI+S+CGLLPRAHGSALFTRGETQ+LAV+TLGD QMAQRID L +
Sbjct: 444 GKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTE 503
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
E K FYLQY+FPPSSVGEVGR GAP+RREIGHG LAERALEP+LPS+ DFPYTIRVESTI
Sbjct: 504 ESKSFYLQYAFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPSEGDFPYTIRVESTI 563
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGDGTPLILSDITGSE
Sbjct: 564 TESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGTPLILSDITGSE 623
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DASGDMDFKVAGNE GI+AFQMDIKV GITLPVM++AL QA+DGR+HIL EM KCSPPPS
Sbjct: 624 DASGDMDFKVAGNEHGISAFQMDIKVVGITLPVMERALLQARDGRKHILNEMSKCSPPPS 683
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+LS HAP+IH+MKVKP K+NLIIGSGG+ +KSI+EETGV AID DDGTVKITA+D+ S
Sbjct: 684 KALSPHAPVIHVMKVKPNKVNLIIGSGGRTIKSILEETGVYAIDARDDGTVKITARDMES 743
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEKSK II+NLTMVP VG+I+RNCEIK+IAPYG FVEIAPGREGLCHISELSS+WLAKAE
Sbjct: 744 LEKSKTIIANLTMVPKVGEIFRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAE 803
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLVGS 866
D KVGD +DVKLIE+NDKGQLRLS +ALLP+AD E P K T
Sbjct: 804 DAYKVGDRIDVKLIEINDKGQLRLSSKALLPDADQE-PSSKQQT---------------- 846
Query: 867 PKPKGSSSEDTVLPHKKVKVFKRPASPAKD-RPYSNKDRTKKS 908
+GS+ E V +KV R + KD P + ++ T K+
Sbjct: 847 ---RGSAKEKVVYKDDIIKVTTRRSRRKKDVEPSAAENATGKT 886
>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
Length = 730
Score = 1204 bits (3115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/722 (82%), Positives = 655/722 (90%), Gaps = 10/722 (1%)
Query: 78 VLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSE 137
V DA S PQP SVKIP GDR ILVETGH+GRQASG+VTVTDGETI+YTSVCL DVPSE
Sbjct: 9 VAHDAPQSLPQPFSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLDDVPSE 68
Query: 138 PSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQ 197
PSDF+PL+VNYQERFSAAGRTSGGFFKREG+ KDHEVL+CRLIDRPLRPT+ KGFYHETQ
Sbjct: 69 PSDFYPLSVNYQERFSAAGRTSGGFFKREGKLKDHEVLICRLIDRPLRPTMFKGFYHETQ 128
Query: 198 ILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED 257
ILSWVLSYDGLH PD+LAVTAAGIAVALSEVPN+KVIAGVRVGLV +KFIVNPTT+EME+
Sbjct: 129 ILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPNTKVIAGVRVGLVDNKFIVNPTTKEMEE 188
Query: 258 SQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML 317
S+LDLLLAG+D AI MIEGYC+FL+EE L+ AVQ+GQDAVR I NEV LV+ CGK KML
Sbjct: 189 SELDLLLAGTDSAIFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNEVGVLVKKCGKAKML 248
Query: 318 DTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDET 377
D IKLPP ELYKHVEEIAG+ELVK+LQI +K+PRRKAL+SLEEKVL+IL+E GYVSKDE
Sbjct: 249 DAIKLPPAELYKHVEEIAGDELVKILQITSKVPRRKALASLEEKVLSILTEKGYVSKDER 308
Query: 378 VGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSK 437
G ET+ DLLE EDEDEE+VVDGEVDEGDVHIKP RK +P+LFSEVDVKLVFKEVTSK
Sbjct: 309 FGTPETVADLLEVEDEDEEIVVDGEVDEGDVHIKPIGRKFSPLLFSEVDVKLVFKEVTSK 368
Query: 438 FLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQ 497
FLR+RIVEGG+RSDGR D IRPI SRCG+LPRAHGSALFTRGETQSLAV+TLGDKQMAQ
Sbjct: 369 FLRKRIVEGGKRSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQ 428
Query: 498 RIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFP 557
R+DNL ++E KRFYLQY FPPS VGEVGRIGAPSRREIGHG L ERAL+P+LPSD+DFP
Sbjct: 429 RVDNLVDEEEFKRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDFP 488
Query: 558 YTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPL 617
YT+RVESTITESNGSSSMASVCGGCLALQDAGVP+KC IAG+AMGMVLDT+EFGGDGTPL
Sbjct: 489 YTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGMVLDTEEFGGDGTPL 548
Query: 618 ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAE 677
ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVM+KAL QA+DGR+HILAE
Sbjct: 549 ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMRKALLQARDGRQHILAE 608
Query: 678 MLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTV 737
MLKCSP PS LSK+APLIHIMKV P+K+N+IIGSGGKKVKSIIEETGVEAIDT +DG V
Sbjct: 609 MLKCSPFPSERLSKYAPLIHIMKVNPKKVNIIIGSGGKKVKSIIEETGVEAIDTREDGIV 668
Query: 738 KITAKDLSSLEKSKAIISNLTMVPTVGDIYR----------NCEIKSIAPYGVFVEIAPG 787
KITAKDLSS+EKSK+II+ LTMVP VGDIYR NCEIKS+APYGVFVEIAPG
Sbjct: 669 KITAKDLSSIEKSKSIINQLTMVPNVGDIYRHVLSLSCFSLNCEIKSVAPYGVFVEIAPG 728
Query: 788 RE 789
RE
Sbjct: 729 RE 730
>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 897
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/772 (75%), Positives = 673/772 (87%), Gaps = 1/772 (0%)
Query: 85 SFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPL 144
S P SVKIP GDR ILVETGH+GRQASG+V VTDGETI+Y SVC+AD PS+PSDFFP+
Sbjct: 84 SGPTKFSVKIPVGDRHILVETGHIGRQASGSVMVTDGETIVYCSVCMADTPSDPSDFFPM 143
Query: 145 NVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLS 204
+V+YQER SAAGRTSGGFFKREGR KDHEVLVCRLIDRPLRPT+ KGFY+ETQILSWV S
Sbjct: 144 SVHYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFS 203
Query: 205 YDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLL 264
YDGLH PD +AVTAAGIA+ALSEVPN + IAGVR+G++ D+F+VNPTT++MEDS+LDL++
Sbjct: 204 YDGLHSPDCVAVTAAGIAMALSEVPNKQTIAGVRIGMINDQFVVNPTTEQMEDSELDLMM 263
Query: 265 AGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP 324
AG+D AILMIEG+C+FL+EE L+QAV+ GQ A+REI + LV+ CGK KM++ I LPP
Sbjct: 264 AGTDSAILMIEGFCNFLTEEKLLQAVETGQAAIREICKAIDVLVQTCGKKKMVEAINLPP 323
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
ELY+HVE+++GEELVK LQIK KI RRKALS+LEEKV+ ILSE GYVSKDE G +E +
Sbjct: 324 TELYRHVEDLSGEELVKALQIKEKILRRKALSALEEKVIMILSEQGYVSKDELSGTIENL 383
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
D++E+EDEDE + GEVDEGDVHIKP SRK LFSEVDVKLVFKEV+SK+LRRRIV
Sbjct: 384 ADIVEEEDEDEVIED-GEVDEGDVHIKPVSRKPRRQLFSEVDVKLVFKEVSSKYLRRRIV 442
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
EG +RSDGR A +RPI+S+CG+LPRAHGSALFTRGETQ+LAV+TLGD QMAQRID L
Sbjct: 443 EGEKRSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVD 502
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+E K FYLQY+FPPSSVGEVGR GAP+RREIGHG LAERALEP+LP + DFPYTIRVES
Sbjct: 503 TEESKSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDFPYTIRVES 562
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
TITESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGDGTPLILSDITG
Sbjct: 563 TITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTHEFGGDGTPLILSDITG 622
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
SEDASGDMDFKVAGNE GI+AFQMDIKV GITLPVM++AL QA+DGR HIL EMLKCSPP
Sbjct: 623 SEDASGDMDFKVAGNEHGISAFQMDIKVVGITLPVMEQALLQARDGRNHILNEMLKCSPP 682
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
PS +LS HAP+IH+MKVKP K+NLIIGSGG+ +KSI+EETGV AID DDGTVKITA+D+
Sbjct: 683 PSKALSPHAPVIHVMKVKPNKVNLIIGSGGRTIKSILEETGVYAIDARDDGTVKITARDM 742
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
SLEKSK II+NLTMVP VG+I+RNCEIK++APYG FVEIAPGREGLCHISELSS+WLAK
Sbjct: 743 KSLEKSKNIITNLTMVPKVGEIFRNCEIKTVAPYGAFVEIAPGREGLCHISELSSSWLAK 802
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKD 856
AED KVGD +DVKLIE+NDKGQLRLS +ALLP+++ E +K T K+
Sbjct: 803 AEDAYKVGDRIDVKLIEINDKGQLRLSCKALLPDSNQEPSSIKQQTSSSVKE 854
>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
Length = 877
Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/772 (76%), Positives = 674/772 (87%), Gaps = 9/772 (1%)
Query: 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
P SV+IP GDR+ILVETGH+GRQAS +V VTDGETI+Y SVCLAD P++P+DFFPL+V
Sbjct: 71 PAKFSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPNDPADFFPLSV 130
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER SAAGRTSGGFFKREG+TKDHEVLVCRLIDRPLRPT+ KGFY+ETQILSWV SYD
Sbjct: 131 HYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYETQILSWVFSYD 190
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
G+H PD LA+TAAGIAVALSE+PN + IAGVR+GL+ D+F+VNPTT++ME+S+LDL++AG
Sbjct: 191 GIHSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLIDDQFVVNPTTEQMENSELDLMMAG 250
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+D AILMIEGYCDFL+EE L++AV+ GQ A+REI + LV+ CGK KM+D I LPPPE
Sbjct: 251 TDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKMVDAISLPPPE 310
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
LY+HVE+I+G+ELVK LQIK KIPRRKALS+LE+KV++ILSE GYVSKD + G+ E++ D
Sbjct: 311 LYRHVEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDASSGVTESLAD 370
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
++EDEDEDE +V GEVDEGD IKP LF+EVDVKLVFKEV+SK+LRRRIVEG
Sbjct: 371 IVEDEDEDEIIVD-GEVDEGDFPIKP--------LFAEVDVKLVFKEVSSKYLRRRIVEG 421
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
GRRSDGR +RPI+S+CGLLPRAHGSALFTRGETQSLAV+TLG QMAQRIDNL +
Sbjct: 422 GRRSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTE 481
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ K FYLQYSFPPS VGEVGRIGAPSRREIGHG LAERALEP+LP + DFPYTIRVESTI
Sbjct: 482 DSKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPYTIRVESTI 541
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGDG+PLILSDITG+E
Sbjct: 542 TESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILSDITGAE 601
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DASGDMD K+AGNE GI+AFQMDIKV GITLPVM++AL QA+DGR+HIL EM K SPPPS
Sbjct: 602 DASGDMDLKIAGNESGISAFQMDIKVVGITLPVMEQALFQARDGRQHILNEMSKSSPPPS 661
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+LS +APLIH+MKVKP K+NLIIGSGGK +KSIIEETGV+AIDT DDGTVKITA+DLSS
Sbjct: 662 KALSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSS 721
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEKSK II+NLTMVP VG+IYRNCEIKSIAPYG FVEIAPGREGLCHISELSS WLAKAE
Sbjct: 722 LEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSGWLAKAE 781
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAA 858
D KVGD +DVKLIE+NDKGQLRLS RALLP+AD+E+ P KD A
Sbjct: 782 DAFKVGDRIDVKLIEINDKGQLRLSSRALLPDADSESNSGSTKEKAPQKDDA 833
>gi|414883682|tpg|DAA59696.1| TPA: chloroplast RNA processing4 [Zea mays]
Length = 880
Score = 1186 bits (3068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/757 (77%), Positives = 670/757 (88%), Gaps = 2/757 (0%)
Query: 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
P SV+IP GDR+ILVETGH+GRQAS +V VTDGETI+Y SVCL+D P++PSDFFPL+V
Sbjct: 69 PTKFSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLSDTPNDPSDFFPLSV 128
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER SAAGRTSGGFFKREG+TKDHEVLVCRLIDRPLRPT+ KGFY ETQILSWV SYD
Sbjct: 129 HYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYFETQILSWVFSYD 188
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
G+H PD LA+TAAGIAVALSE+PN + IAGVR+GL+ ++FIVNPTT++ME+S+LDL++AG
Sbjct: 189 GIHSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLINNQFIVNPTTEQMENSELDLMMAG 248
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+D AILMIEGYCDFL+EE L++AV+ GQ A+REI + LV+ CGK KM+D I LPPPE
Sbjct: 249 TDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKMVDAISLPPPE 308
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
LY+HVE+I+G+EL+K LQIK KIPRRKALS+LEEKV++ILSE GYVSKD G E++ D
Sbjct: 309 LYRHVEDISGDELMKALQIKGKIPRRKALSALEEKVISILSEQGYVSKDGLSGGTESLAD 368
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
++EDEDEDE V GEVDEGDVHIKP SRK LF+EVDVKLVFKE++SK+LR+RIVE
Sbjct: 369 IVEDEDEDEIVDD-GEVDEGDVHIKPVSRKPL-QLFAEVDVKLVFKEISSKYLRKRIVER 426
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+RSDGR +RPI+S+CGLLPRAHGSALFTRGETQSLAV+TLG QMAQRIDNL +
Sbjct: 427 GKRSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTE 486
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ K FYLQYSFPPS VGEVGRIGAPSRREIGHG LAERALEP+LP + DFPYTIRVESTI
Sbjct: 487 DSKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPLEEDFPYTIRVESTI 546
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGDG+PLILSDITG+E
Sbjct: 547 TESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILSDITGAE 606
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DASGDMD K+AGNE GI+AFQMDIKV GITLPVM+KAL QA++GR+HIL EMLK SPPPS
Sbjct: 607 DASGDMDLKIAGNESGISAFQMDIKVVGITLPVMEKALLQAREGRQHILNEMLKSSPPPS 666
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+LS HAPLIH+MKVKP K+NLIIGSGGK +KSIIEETGV+AIDT DDGTVKITA+DL+S
Sbjct: 667 KALSPHAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLTS 726
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEKSK II+NLTMVP VG+IYR+CEIKSIAPYG FVEIAPGREGLCHISELSS WLAKAE
Sbjct: 727 LEKSKIIIANLTMVPKVGEIYRDCEIKSIAPYGAFVEIAPGREGLCHISELSSGWLAKAE 786
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
D KVGD +DVKLIE+NDKGQLRLS RALLP+ D+E+
Sbjct: 787 DAFKVGDRIDVKLIEINDKGQLRLSSRALLPDVDSES 823
>gi|1588265|prf||2208281A 100RNP protein
Length = 779
Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/778 (77%), Positives = 676/778 (86%), Gaps = 9/778 (1%)
Query: 16 PHSSHF--SLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPE 73
PHSS S S CK+ LS++ S + SL LL + ++F+VRA A
Sbjct: 7 PHSSTLPSSHSKNCKILLSASA--LSRYRTFKTLASLHRLLPTNSHGKKFNVRAMAQ-TH 63
Query: 74 VSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLAD 133
VS+ D+L QP SVKIPFGDR ILVETGH+GRQASGAVTVTDGETI+YT+VC++D
Sbjct: 64 VSQKHAHDSL----QPYSVKIPFGDRHILVETGHIGRQASGAVTVTDGETIVYTTVCMSD 119
Query: 134 VPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFY 193
+PSEPSDFFPL+VNYQERFSAAGRTSGGFFKREGR KD+EVLVCRLIDRPLR T++KGFY
Sbjct: 120 IPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRPKDNEVLVCRLIDRPLRTTMLKGFY 179
Query: 194 HETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQ 253
HETQILSWVLSYDGLH PDALAVTAAGIAVALSE+ ++K +AGVRVGLVG K+IVNPTT
Sbjct: 180 HETQILSWVLSYDGLHPPDALAVTAAGIAVALSELFHTKPVAGVRVGLVGGKYIVNPTTN 239
Query: 254 EMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK 313
EME+S+LDL++AG+D AILMIEGYC+FL EE L++AV+VGQDAVR I EV+ALVE CGK
Sbjct: 240 EMENSELDLVVAGTDSAILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEVEALVEKCGK 299
Query: 314 PKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVS 373
PKM+D IKLPPPELYKHVEEIAG+ELV LQIK K+PRRKAL SLEEKV+ IL++ GYV
Sbjct: 300 PKMIDAIKLPPPELYKHVEEIAGDELVHALQIKKKLPRRKALVSLEEKVVDILTQRGYVG 359
Query: 374 KDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKE 433
K I ET+PDL DE+EDEEVVVDGEVDEGDVHIKP + TP+LFSEVDVKLVFKE
Sbjct: 360 KSVATVIPETLPDLYVDEEEDEEVVVDGEVDEGDVHIKPSPKNCTPLLFSEVDVKLVFKE 419
Query: 434 VTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDK 493
TSK+LR+RIVEGGRRSDGR ++G+RPI+SRCGLLPRAHGSALFTRGETQ+LAV+TLGDK
Sbjct: 420 TTSKYLRKRIVEGGRRSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDK 479
Query: 494 QMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSD 553
QMAQRID LE DDE KRFYLQYSFPPS VGE GR+GAPSRREIGHGTLAERALEP+LPS+
Sbjct: 480 QMAQRIDTLEGDDESKRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSE 539
Query: 554 NDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGD 613
++FPYT+RVES ITESNGSSSMASVCGG LAL DAGVP+KC IAG+AMGMVLDT EFGGD
Sbjct: 540 DEFPYTVRVESNITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGD 599
Query: 614 GTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRH 673
GTPLILSDITGSEDASGDMDFKVAGN D +TAFQMDIKVGGITL VMK+AL QAKDGR+
Sbjct: 600 GTPLILSDITGSEDASGDMDFKVAGNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKI 659
Query: 674 ILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTED 733
ILAEM KC PPPS +LS +APLIH+MKV+PEK+NLIIGSGGK V+SIIE TGVEAIDT+D
Sbjct: 660 ILAEMSKCLPPPSKTLSIYAPLIHVMKVRPEKVNLIIGSGGKTVRSIIEATGVEAIDTQD 719
Query: 734 DGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
DGTVKITA+DL SLEKSKA+I+NLTMVPT+GDIYRNCEIKSIAPYG FVEIAPGREG
Sbjct: 720 DGTVKITARDLESLEKSKAMIANLTMVPTIGDIYRNCEIKSIAPYGAFVEIAPGREGF 777
>gi|356560353|ref|XP_003548457.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Glycine max]
Length = 1087
Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/771 (77%), Positives = 662/771 (85%), Gaps = 17/771 (2%)
Query: 1 MLATSPGGLH-IRPCYPHS--SHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRR 57
MLA LH + HS SHF LS PRF S+K + FRSL +RR
Sbjct: 1 MLACPSSSLHGLATLQRHSQPSHFLLSKPLFF------PRFHASRKCN-FRSLLSGNNRR 53
Query: 58 KYSERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVT 117
R +VRASA PEVSE V+ A QP SVKIP GDR ILVETG +GRQASG+VT
Sbjct: 54 ----RSAVRASADSPEVSESVVG-ADGGGLQPYSVKIPVGDRHILVETGSIGRQASGSVT 108
Query: 118 VTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVC 177
VTDGETI+YT+VCL DVP EPSDFFPL+V YQERFSAAGRTSGGFFKREG+ KDHEVL+C
Sbjct: 109 VTDGETIVYTTVCLDDVPCEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLIC 168
Query: 178 RLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGV 237
RLIDRPLRPT+ KGFYHETQILSWVLSYDGLH PD+LA+TAAGIAVALSEVP SK +AGV
Sbjct: 169 RLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAGV 228
Query: 238 RVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAV 297
RVGLVGDK+IVNPTT+EME S+LDLLLAG+D AILMIEGY FL EE L++AV+VGQDAV
Sbjct: 229 RVGLVGDKYIVNPTTEEMEHSELDLLLAGTDSAILMIEGYSSFLPEEKLLKAVEVGQDAV 288
Query: 298 REISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSS 357
R I NEV+ALV+ CGKPKMLD IKLPPPELY+HVE IAG+ELVKVLQI+NKIPRRKALSS
Sbjct: 289 RAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEAIAGDELVKVLQIRNKIPRRKALSS 348
Query: 358 LEEKVLTILSENGYVSKDETV-GIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRK 416
LEEKVL IL+ENG+VS D T+ ETI ++LE EDEDEEV+VDGEVDEGDVHIKP RK
Sbjct: 349 LEEKVLKILTENGFVSNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRK 408
Query: 417 STPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSAL 476
+LFSEVDVKLVFKE+TSK+ R+RIVEGG+RSDGR DGIRPI+SRCGLLPRAHGS L
Sbjct: 409 PA-LLFSEVDVKLVFKEITSKYWRKRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSTL 467
Query: 477 FTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREI 536
FTRGETQ+LAV+TLGDKQMAQRID L+ DE KRFYLQYSFPPS VGE GRIGAPSRREI
Sbjct: 468 FTRGETQALAVVTLGDKQMAQRIDTLDGVDEFKRFYLQYSFPPSCVGEAGRIGAPSRREI 527
Query: 537 GHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSI 596
GHG LAER+L P+LPS++DFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSI
Sbjct: 528 GHGMLAERSLAPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSI 587
Query: 597 AGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGIT 656
AG+AMGMVLDT EFGGDGTPLILSDITGSEDASGDMDFKVAGN DGITAFQMDIKVGGIT
Sbjct: 588 AGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNGDGITAFQMDIKVGGIT 647
Query: 657 LPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKK 716
LP+M+KAL QA+DGR+HIL M+ SPPP+ LSK+APLIH+MKV+P++INLIIGSGGKK
Sbjct: 648 LPIMRKALLQARDGRKHILGAMMNSSPPPAKMLSKYAPLIHVMKVRPDRINLIIGSGGKK 707
Query: 717 VKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIY 767
VKSIIEE+GV+ IDTEDDGTVKI AKDL SLEKSKAII++LTMVPT+GDIY
Sbjct: 708 VKSIIEESGVDTIDTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIY 758
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 12/126 (9%)
Query: 790 GLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
GLCHISELSS WL KAEDV KVGD +DVKLIEVN+KGQLRLS RALLP+ +A
Sbjct: 960 GLCHISELSSGWLPKAEDVFKVGDRIDVKLIEVNEKGQLRLSHRALLPDTEAS------- 1012
Query: 850 TGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNKDRTKKSS 909
KD +K S K K S+ L + ++ ++D+P++NKD+ KKSS
Sbjct: 1013 ----PKDGLVEEKTEQS-KDKSSTPNSQPLLKEVQRMILYFLLKSQDKPFTNKDKRKKSS 1067
Query: 910 GKAVSS 915
KAV S
Sbjct: 1068 NKAVGS 1073
>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
Length = 865
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/791 (69%), Positives = 635/791 (80%), Gaps = 64/791 (8%)
Query: 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
P S KIP GDR ILVETGH+GRQAS +V VTDGET
Sbjct: 87 PTKFSTKIPVGDRHILVETGHIGRQASASVMVTDGET----------------------- 123
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
VLVCRLIDRPLRPT+ KGFY+ETQILSWV SYD
Sbjct: 124 ---------------------------VLVCRLIDRPLRPTMPKGFYYETQILSWVFSYD 156
Query: 207 GLHFPDALAVTAAGIAV-------------ALSEVPNSKVIAGVRVGLVGDKFIVNPTTQ 253
G+H PD+LA+TAAG+A+ ALSEVPN + IAGVR+G++ D+F+VNPTT+
Sbjct: 157 GIHSPDSLAITAAGVAICSCSYLPQSFLCRALSEVPNKQTIAGVRIGMINDQFVVNPTTE 216
Query: 254 EMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK 313
+M+DS+LDL++AG+D AILMIEGYCDFL+EE L+QAV+ GQ A+REI + LV+ CGK
Sbjct: 217 QMDDSELDLVMAGTDSAILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGK 276
Query: 314 PKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVS 373
KM D I LPPPELY+HVE+I+G+ELVK LQIK KI RRKALS+LEEKV+TILSE GYV+
Sbjct: 277 KKMFDAIDLPPPELYRHVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVA 336
Query: 374 KDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKE 433
KDE+ G+ E + D++E+EDEDE +V GEVDEG+VHIKP SRK LFSEVDVKLVFKE
Sbjct: 337 KDESSGVSENLADVIEEEDEDEVIVD-GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKE 395
Query: 434 VTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDK 493
V+SKFLRRRIVEGG+RSDGR +RPI+S+CGLLPRAHGSALFTRGETQ+LAV+TLGD
Sbjct: 396 VSSKFLRRRIVEGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDY 455
Query: 494 QMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSD 553
QMAQRIDNL +E K FYLQY+FPPSSVGEVGRIGAP+RREIGHG LAERALEP+LP +
Sbjct: 456 QMAQRIDNLVDTEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPE 515
Query: 554 NDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGD 613
DFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGD
Sbjct: 516 EDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGD 575
Query: 614 GTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRH 673
G PLILSDITG+EDASGDMDFKVAGNE+GI+AFQMDIKV GITLP+M+ AL QA+DGR+H
Sbjct: 576 GKPLILSDITGAEDASGDMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKH 635
Query: 674 ILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTED 733
IL EM KCSPPP+ LS +APLIH+MKVKP K+NLIIGSGGK +KSIIEETGV+AIDT D
Sbjct: 636 ILNEMSKCSPPPAKVLSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGD 695
Query: 734 DGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCH 793
DGTVKITA+DLSSLEKSKAII+NLTMVP VG+IYRNCEIK+IAPYG FVEIAPGREGLCH
Sbjct: 696 DGTVKITARDLSSLEKSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCH 755
Query: 794 ISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDP 853
ISELSS+WLAKAED KVGD +DVKLIE+NDKGQLRLS RALLP+A+ E+ + G
Sbjct: 756 ISELSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQESSSKQQAGGST 815
Query: 854 TKDAAASDKLV 864
+ A D LV
Sbjct: 816 REKAPQKDNLV 826
>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
Length = 778
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/777 (70%), Positives = 627/777 (80%), Gaps = 64/777 (8%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
ILVETGH+GRQAS +V VTDGET
Sbjct: 14 ILVETGHIGRQASASVMVTDGET------------------------------------- 36
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
VLVCRLIDRPLRPT+ KGFY+ETQILSWV SYDG+H PD+LA+TAAG
Sbjct: 37 -------------VLVCRLIDRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAG 83
Query: 221 IAV-------------ALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+A+ ALSEVPN + IAGVRVG++ D+F+VNPTT++M+DS+LDL++AG+
Sbjct: 84 VAICSCSYLPQSFLCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGT 143
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D AILMIEGYCDFL+EE L+QAV+ GQ A+REI + LV+ CGK KM D I LPPPEL
Sbjct: 144 DSAILMIEGYCDFLTEEKLLQAVETGQGAIREICKAIDGLVQKCGKKKMFDAIDLPPPEL 203
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
Y+HVE+I+G+ELVK LQIK KI RRKALS+LEEKV+TILSE GYV+KDE+ G+ E + D+
Sbjct: 204 YRHVEDISGDELVKALQIKEKILRRKALSALEEKVITILSEQGYVAKDESSGVSENLADV 263
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+E+EDEDE +V GEVDEG+VHIKP SRK LFSEVDVKLVFKEV+SKFLRRRIVEGG
Sbjct: 264 IEEEDEDEVIVD-GEVDEGEVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKFLRRRIVEGG 322
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+RSDGR +RPI+S+CGLLPRAHGSALFTRGETQ+LAV+TLGD QMAQRIDNL +E
Sbjct: 323 KRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEE 382
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
K FYLQY+FPPSSVGEVGRIGAP+RREIGHG LAERALEP+LP + DFPYTIRVESTIT
Sbjct: 383 SKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTIT 442
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLALQDAGVPIK +AG+AMG+VLDT EFGGDG PLILSDITG+ED
Sbjct: 443 ESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTLEFGGDGKPLILSDITGAED 502
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
ASGDMDFKVAGNE+GI+AFQMDIKV GITLP+M+ AL QA+DGR+HIL EM KCSPPP+
Sbjct: 503 ASGDMDFKVAGNENGISAFQMDIKVVGITLPIMEHALLQARDGRKHILNEMSKCSPPPAK 562
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +APLIH+MKVKP K+NLIIGSGGK +KSIIEETGV+AIDT DDGTVKITA+DLSSL
Sbjct: 563 VLSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLSSL 622
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EKSKAII+NLTMVP VG+IYRNCEIK+IAPYG FVEIAPGREGLCHISELSS+WLAKAED
Sbjct: 623 EKSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAFVEIAPGREGLCHISELSSSWLAKAED 682
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLV 864
KVGD +DVKLIE+NDKGQLRLS RALLP+A+ E+ + G + A D LV
Sbjct: 683 AFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQESSSKQQAGGSTREKAPQKDNLV 739
>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
Length = 808
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/772 (55%), Positives = 548/772 (70%), Gaps = 14/772 (1%)
Query: 57 RKYSERFSVRASATGPEVSEPVLSDALPSFP-----QPVSVKIPFGDRQILVETGHMGRQ 111
R E V S + +EP L L F Q SV+IP GDRQI++ETG +GRQ
Sbjct: 30 RATKENLVVVDSDSTTSFAEPALQPELGDFCIGPCRQQHSVRIPVGDRQIVLETGSIGRQ 89
Query: 112 ASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKD 171
A GAVT++DGETI+YT+VC + SEPSDF PL V+Y ER+SAAGRTSGGF KREG+ +D
Sbjct: 90 AGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHERYSAAGRTSGGFNKREGKPRD 149
Query: 172 HEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNS 231
EV + RL+DRPLRP + KG++HE Q+LSWVLSYDG H P+ LA+TAAG A+ALS+VP
Sbjct: 150 SEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSYDGSHLPEPLAITAAGAALALSDVPVL 209
Query: 232 KVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQ 291
K +AGVRVG + K+++NPT E+ S LD+++AG+ D +LMIEGYC+ LSE+ L++AV+
Sbjct: 210 KPVAGVRVGYINGKYVLNPTASEVTKSSLDMIMAGTSDGLLMIEGYCNLLSEDELVKAVE 269
Query: 292 VGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPR 351
GQ AV+ I E++ E G+ K + L + ++EI G++L L I+ K PR
Sbjct: 270 TGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEERIKEIVGDDLYLALHIRGKQPR 329
Query: 352 RKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIK 411
+++LE+KV + L+E G V + +T L DE+ + DGE+D+GDVHI
Sbjct: 330 AAVITALEKKVWSKLTEEG-------VALSKTREQLEYAHVWDEDEIKDGEIDQGDVHIT 382
Query: 412 PKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRA 471
P R S LF VKL FKE TSK L+ I + RSDGR +RPIS C LLPRA
Sbjct: 383 PTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGISDVRPISCSCNLLPRA 442
Query: 472 HGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAP 531
HGSA+FTRGETQ+L + LG MAQRID + DEVKRFY+QY FP S VGEVGRIG
Sbjct: 443 HGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYVFPHSCVGEVGRIGPA 502
Query: 532 SRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVP 591
SRREIGHG L ER+LEP+ PS FPYT+RVESTITESNGSSSMASVCG LAL DAGVP
Sbjct: 503 SRREIGHGRLIERSLEPIFPSK--FPYTVRVESTITESNGSSSMASVCGAYLALCDAGVP 560
Query: 592 IKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIK 651
+KC IAGVAMG++LD E+GG G P+IL+DI GSEDA GDMD KVAG+++GITAFQMD+K
Sbjct: 561 VKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKVAGSKEGITAFQMDLK 620
Query: 652 VGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIG 711
V GI L ++K+AL +AK R HIL EM CSPPPS LSKH LI +KV EK+N+++G
Sbjct: 621 VQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLIDFVKVGREKVNMVVG 680
Query: 712 SGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCE 771
+GGK V+ II+++GVE++D DG+++I KD ++K+ I ++T PTVG +YRNC
Sbjct: 681 TGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRSITTDPTVGTVYRNCP 740
Query: 772 IKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVN 823
+KS+ +G F+EI+PGREGLCHISEL++N L++ E+ V VG+ +DVK+IEV
Sbjct: 741 VKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLDVKVIEVT 792
>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
Length = 806
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/772 (54%), Positives = 547/772 (70%), Gaps = 14/772 (1%)
Query: 57 RKYSERFSVRASATGPEVSEPVLSDALPSFP-----QPVSVKIPFGDRQILVETGHMGRQ 111
R E V S + +EP L L F Q V+IP GDRQI++ETG +GRQ
Sbjct: 30 RAKKENLVVVDSDSTTSFAEPALQPELGDFCIGPCRQQHCVRIPVGDRQIVLETGSIGRQ 89
Query: 112 ASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKD 171
A GAVT++DGETI+YT+VC + SEPSDF PL V+Y ER+SAAGRTSGGF KREG+ +D
Sbjct: 90 AGGAVTISDGETILYTTVCTSAEASEPSDFVPLYVHYHERYSAAGRTSGGFNKREGKPRD 149
Query: 172 HEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNS 231
EV + RL+DRPLRP + KG++HE Q+LSWVLS+DGLH P+ LA+TAAG A+ALS+VP
Sbjct: 150 SEVFISRLVDRPLRPMIPKGYFHEIQVLSWVLSFDGLHLPEPLAITAAGAALALSDVPVL 209
Query: 232 KVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQ 291
K +AGVRVG + K+++NPT E+ S LD+++AG+ D +LMIEGYC+ LSE+ L++AV+
Sbjct: 210 KPVAGVRVGYINGKYVLNPTASEVTKSSLDMIVAGTSDGLLMIEGYCNLLSEDELVKAVE 269
Query: 292 VGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPR 351
GQ AV+ I E++ E G+ K + L + ++EI G++L L I K PR
Sbjct: 270 TGQRAVKIICKELEEFGEKFGRKKRILKAPFSTSGLEERIKEIMGDDLYLALHISGKQPR 329
Query: 352 RKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIK 411
+++LE+KV + L+E G V + +T L DE+ + DGE+D+GDVHI
Sbjct: 330 AAVITALEKKVWSKLTEEG-------VALSKTREQLEYAHVWDEDEIKDGEIDQGDVHIT 382
Query: 412 PKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRA 471
P R S LF VKL FKE TSK L+ I + RSDGR +RPIS C LLPRA
Sbjct: 383 PTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVRSDGRGISDVRPISCSCNLLPRA 442
Query: 472 HGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAP 531
HGSA+FTRGETQ+L + LG MAQRID + DEVKRFY+QY FP S VGEVGRIG
Sbjct: 443 HGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVKRFYVQYVFPHSCVGEVGRIGPA 502
Query: 532 SRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVP 591
SRREIGHG L ER+LEP+ PS FPYT+RVESTITESNGSSSMASVCG LAL DAGVP
Sbjct: 503 SRREIGHGRLIERSLEPIFPSK--FPYTVRVESTITESNGSSSMASVCGAYLALCDAGVP 560
Query: 592 IKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIK 651
+KC IAGVAMG++LD E+GG G P+IL+DI GSEDA GDMD KVAG++DGITAFQMD+K
Sbjct: 561 VKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGDMDLKVAGSKDGITAFQMDLK 620
Query: 652 VGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIG 711
V GI L ++K+AL +AK R HIL EM CSPPPS LSKH LI +K+ EK+N+++G
Sbjct: 621 VQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSKHVDLIDFVKIGREKVNMVVG 680
Query: 712 SGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCE 771
+GGK V+ II+++GVE++D DG+++I KD ++K+ I ++T PTVG +YRNC
Sbjct: 681 TGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAMEKIRSITTDPTVGTVYRNCP 740
Query: 772 IKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVN 823
+KS+ +G F+EI+PGREGLCHISEL++N L++ E+ V VG+ +DVK+IEV
Sbjct: 741 VKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAVGERLDVKVIEVT 792
>gi|357508847|ref|XP_003624712.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355499727|gb|AES80930.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 734
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/700 (65%), Positives = 517/700 (73%), Gaps = 69/700 (9%)
Query: 1 MLATSPGGLHIRPCYPHSSHFSLSARCKLSLSSNCPR-FSTSQKSSKFRSLSLL-LSRRK 58
MLA H + SH S KL LS + P F + F L L + K
Sbjct: 1 MLACPSTTFHCPTTFHRHSHPS-----KLLLSKSKPLIFPPRSSFAAFGKLKLSSIFSGK 55
Query: 59 YSERFSVRASA-TGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVT 117
RF+V+AS + E+ E +D S P SVKIP GDR ILVETGHMGRQASG+VT
Sbjct: 56 NCRRFNVKASIDSSSELLES--ADGGSSHIAPHSVKIPVGDRYILVETGHMGRQASGSVT 113
Query: 118 VTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVC 177
VTDGETI+YT+VCL D+PSEPSDFFPL+VNYQERFSAAGRTSGGFFKREG+TKDHEVL+C
Sbjct: 114 VTDGETIVYTTVCLDDIPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLIC 173
Query: 178 RLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALS----------- 226
RLIDRPLRPT+ KGFYHETQILSWVLSYDGLH PD+LAVTAAGIA+ALS
Sbjct: 174 RLIDRPLRPTMPKGFYHETQILSWVLSYDGLHIPDSLAVTAAGIALALSEVPTSKAVAGV 233
Query: 227 ----------------EVPNSKV---IAGVRVGLV----------------GDKFIVNPT 251
E+ NS++ +AG ++ ++F PT
Sbjct: 234 RVGLVGDKYIVNPTSEEMENSELDLMLAGTDSAILMIELPNFVIELAPVSRANRFPDFPT 293
Query: 252 TQEM---------EDSQL--DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREI 300
+S L D LL + + + GY +FL EE L++AV+VGQDAVR I
Sbjct: 294 LNTTYFAKEGPSPHNSSLVKDKLLEFALTLVHKMWGYGNFLPEEKLLKAVEVGQDAVRAI 353
Query: 301 SNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEE 360
NEV+ALV+ CGKPKM+D IKLPPPELYKHVEEIAG+ELVKVLQI+NKIPRRKALSSLEE
Sbjct: 354 CNEVEALVKKCGKPKMVDAIKLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEE 413
Query: 361 KVLTILSENGYVSKDET-VGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTP 419
KVL ILSENG+V+ D ETI ++LEDEDEDEEV+VDGEVDEGDVHIKP RK T
Sbjct: 414 KVLKILSENGFVTNDTAPRNNAETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTPRKPT- 472
Query: 420 MLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTR 479
LFSEVDVKLVFK+VTSKFLR+RIVEGG+RSDGR + IRPI+S CGLLPRAHGSALFTR
Sbjct: 473 RLFSEVDVKLVFKDVTSKFLRKRIVEGGKRSDGRTPNEIRPINSSCGLLPRAHGSALFTR 532
Query: 480 GETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHG 539
GETQSLAV TLGD +MAQRIDNL D+ KRFYLQYSFPPS VGEVGRIGAPSRREIGHG
Sbjct: 533 GETQSLAVATLGDNKMAQRIDNLMDVDDYKRFYLQYSFPPSCVGEVGRIGAPSRREIGHG 592
Query: 540 TLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599
LAER+LE +LPSD DFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIK SIAG+
Sbjct: 593 MLAERSLETILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSSIAGI 652
Query: 600 AMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGN 639
AMG+VLDT EFGGDGTPLILSDITGSEDASGDMDFK + +
Sbjct: 653 AMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKASNS 692
>gi|338174907|ref|YP_004651717.1| polyribonucleotide nucleotidyltransferase [Parachlamydia
acanthamoebae UV-7]
gi|336479265|emb|CCB85863.1| polyribonucleotide nucleotidyltransferase [Parachlamydia
acanthamoebae UV-7]
Length = 696
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/747 (49%), Positives = 504/747 (67%), Gaps = 58/747 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNYQ 149
+ ++ G+++I+ ETG + RQA+GAV V GETI++ + C AD P DF PL V+YQ
Sbjct: 7 TTRVKVGEQEIVFETGKIARQANGAVLVRSGETILFNTAC-ADYDLAPGEDFLPLRVDYQ 65
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+FS+AG+T GF KREGR + E LV RLIDRPLRP G+Y+ETQ+LS+V SYDG++
Sbjct: 66 EKFSSAGKTVSGFIKREGRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVN 125
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ LA+ A A+ +S++P K + VRVGL+G KF+VNPT + + S+LDL+LAG++D
Sbjct: 126 APEPLAICGASAALVISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQKKSKLDLILAGTED 185
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LMIEGYCDFL+EE +++A+++G ++ I + A + GKPK L T++ P +++
Sbjct: 186 AVLMIEGYCDFLTEEQILEAIEIGHQGIKAICETLLAWQKELGKPKTLHTLRPLPQDVFH 245
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
VEEIA L + L+IK K R +AL +++ V L +P+
Sbjct: 246 SVEEIAKPLLEQALRIKEKQKREEALGAVKSAVQQKL-----------------LPE--- 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
DGE LF DV KEV+SK++R I+ R
Sbjct: 286 ----------DGEP-----------------LFPAKDVATALKEVSSKYMREMILNENVR 318
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
SDGR + IRPI G+LPRAHGS+LFTRGETQS++V TLG + MAQR ++L+ + +
Sbjct: 319 SDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGGESMAQRFEDLDGEGS-R 377
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
FYLQY FPP SVGEVGRIG+P RRE+GHG LAERAL+ +LP FPYTIR+ES ITES
Sbjct: 378 TFYLQYFFPPFSVGEVGRIGSPGRREVGHGKLAERALQAILPPKEAFPYTIRLESNITES 437
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCGGCLA+ +AGVP+K +AG+AMG++L+ + F +ILSDI G EDA
Sbjct: 438 NGSSSMATVCGGCLAMMEAGVPVKRPVAGIAMGLILENERF------IILSDILGIEDAL 491
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFK+ G+ +GITAFQMDIKV GIT +MK AL+QAK GR HIL +ML+ P +
Sbjct: 492 GDMDFKITGDAEGITAFQMDIKVEGITPSIMKAALEQAKKGRIHILGKMLEVCPTHKEEM 551
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I M++KP KI +IG GGK++++IIE +GVE ID DDG + I + +L +EK
Sbjct: 552 SVYAPRIETMQIKPSKIATVIGPGGKQIRAIIEASGVE-IDINDDGLISIASSNLEGIEK 610
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+KA+I LT +G +Y +I +IAP+G+FVEI PG+EGLCHISE + + D V
Sbjct: 611 AKAMIVGLTSDVEIGKVYTG-KIANIAPFGIFVEILPGKEGLCHISEFDNTRINNLNDYV 669
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD++ VK++E+N++GQL+LSR+A L
Sbjct: 670 KIGDMITVKVLEINERGQLKLSRKATL 696
>gi|282889646|ref|ZP_06298186.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500473|gb|EFB42752.1| hypothetical protein pah_c003o034 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 694
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/747 (49%), Positives = 504/747 (67%), Gaps = 58/747 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNYQ 149
+ ++ G+++I+ ETG + RQA+GAV V GETI++ + C AD P DF PL V+YQ
Sbjct: 5 TTRVKVGEQEIVFETGKIARQANGAVLVRSGETILFNTAC-ADYDLAPGEDFLPLRVDYQ 63
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+FS+AG+T GF KREGR + E LV RLIDRPLRP G+Y+ETQ+LS+V SYDG++
Sbjct: 64 EKFSSAGKTVSGFIKREGRPSEKETLVSRLIDRPLRPMFENGYYNETQVLSYVWSYDGVN 123
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ LA+ A A+ +S++P K + VRVGL+G KF+VNPT + + S+LDL+LAG++D
Sbjct: 124 APEPLAICGASAALVISDIPLIKPVGAVRVGLIGGKFVVNPTVEHQKKSKLDLILAGTED 183
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LMIEGYCDFL+EE +++A+++G ++ I + A + GKPK L T++ P +++
Sbjct: 184 AVLMIEGYCDFLTEEQILEAIEIGHQGIKAICETLLAWQKELGKPKTLHTLRPLPQDVFH 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
VEEIA L + L+IK K R +AL +++ V L +P+
Sbjct: 244 SVEEIAKPLLEQALRIKEKQKREEALGAVKSAVQQKL-----------------LPE--- 283
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
DGE LF DV KEV+SK++R I+ R
Sbjct: 284 ----------DGEP-----------------LFPAKDVATALKEVSSKYMREMILNENVR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
SDGR + IRPI G+LPRAHGS+LFTRGETQS++V TLG + MAQR ++L+ + +
Sbjct: 317 SDGRTSINIRPIDIEQGILPRAHGSSLFTRGETQSVSVCTLGGESMAQRFEDLDGEGS-R 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
FYLQY FPP SVGEVGRIG+P RRE+GHG LAERAL+ +LP FPYTIR+ES ITES
Sbjct: 376 TFYLQYFFPPFSVGEVGRIGSPGRREVGHGKLAERALQAILPPKEAFPYTIRLESNITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCGGCLA+ +AGVP+K +AG+AMG++L+ + F +ILSDI G EDA
Sbjct: 436 NGSSSMATVCGGCLAMMEAGVPVKRPVAGIAMGLILENERF------IILSDILGIEDAL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFK+ G+ +GITAFQMDIKV GIT +MK AL+QAK GR HIL +ML+ P +
Sbjct: 490 GDMDFKITGDAEGITAFQMDIKVEGITPSIMKAALEQAKKGRIHILGKMLEVCPTHKEEM 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I M++KP KI +IG GGK++++IIE +GVE ID DDG + I + +L +EK
Sbjct: 550 SVYAPRIETMQIKPSKIATVIGPGGKQIRAIIEASGVE-IDINDDGLISIASSNLEGIEK 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+KA+I LT +G +Y +I +IAP+G+FVEI PG+EGLCHISE + + D V
Sbjct: 609 AKAMIVGLTSDVEIGKVYTG-KIANIAPFGIFVEILPGKEGLCHISEFDNTRINNLNDYV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD++ VK++E+N++GQL+LSR+A L
Sbjct: 668 KIGDMITVKVLEINERGQLKLSRKATL 694
>gi|187610325|sp|Q6MDI2.2|PNP_PARUW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 697
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/749 (49%), Positives = 505/749 (67%), Gaps = 56/749 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q ++ +P G ++I+ ETG + RQA GAV V GET+++T+ C A +DF PL V+
Sbjct: 2 QRETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+AG+T GGF KREGR + EVLV RLIDRP+RP +G+Y+E Q+LS+V SYDG
Sbjct: 62 YQEKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ P+ LA+ A A+ +S++P K + VR+G + +FIVNPT ++ + S+LDLL+AG+
Sbjct: 122 INSPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++A+LMIEG+CDFL+E+ +++A+++G +++ I ++ GKPK +T++ P EL
Sbjct: 182 EEAVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKEL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
Y VE IA L K L+I K R +AL+ + + + D
Sbjct: 242 YADVESIANPLLEKALRICEKQKREEALAE----------------------VTKAVNDR 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L E+E+ PK + + V K+V+SK +R+ I+
Sbjct: 280 LMPENEE-----------------PK--------YPAKHIAYVIKDVSSKMMRQMILNEN 314
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR + IR I LLPRAHGS+LFTRGETQ+LAV TLG MAQR ++LE +
Sbjct: 315 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RFYLQYSFPP SVGEVGR+GAP RREIGHG LAERAL V+P+ FPYTIR+ES IT
Sbjct: 375 -NRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLESNIT 433
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCGGCLAL DAGV IK +AG+AMG++L+ + F +ILSDI G ED
Sbjct: 434 ESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERF------IILSDILGIED 487
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKV G+++GITAFQMDIKV GIT+ +M+ AL+QAK+GR HIL +ML P
Sbjct: 488 ALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLAVCPTYKG 547
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S++AP I +++KP KI ++IG GGK++++IIE+TGV+ ID +D G V I A DL S+
Sbjct: 548 EMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQ-IDIDDTGLVNIAAIDLVSI 606
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+KAII LT +G IY I SIAP+GVFVEI PG+EGLCHISE N + ++
Sbjct: 607 EKAKAIIHGLTAEIEIGRIYSGKAI-SIAPFGVFVEILPGKEGLCHISEFDVNRINSLDE 665
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VK GD++ VK++++N++GQ++LSR+A L
Sbjct: 666 FVKQGDMLMVKVLDINERGQIKLSRKATL 694
>gi|46446277|ref|YP_007642.1| polynucleotide phosphorylase [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399918|emb|CAF23367.1| probable polyribonucleotide nucleotidyltransferase [Candidatus
Protochlamydia amoebophila UWE25]
Length = 702
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/749 (49%), Positives = 505/749 (67%), Gaps = 56/749 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q ++ +P G ++I+ ETG + RQA GAV V GET+++T+ C A +DF PL V+
Sbjct: 7 QRETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVD 66
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+AG+T GGF KREGR + EVLV RLIDRP+RP +G+Y+E Q+LS+V SYDG
Sbjct: 67 YQEKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDG 126
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ P+ LA+ A A+ +S++P K + VR+G + +FIVNPT ++ + S+LDLL+AG+
Sbjct: 127 INSPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGT 186
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++A+LMIEG+CDFL+E+ +++A+++G +++ I ++ GKPK +T++ P EL
Sbjct: 187 EEAVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKEL 246
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
Y VE IA L K L+I K R +AL+ + + + D
Sbjct: 247 YADVESIANPLLEKALRICEKQKREEALAE----------------------VTKAVNDR 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L E+E+ PK + + V K+V+SK +R+ I+
Sbjct: 285 LMPENEE-----------------PK--------YPAKHIAYVIKDVSSKMMRQMILNEN 319
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR + IR I LLPRAHGS+LFTRGETQ+LAV TLG MAQR ++LE +
Sbjct: 320 VRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLEGEGN 379
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RFYLQYSFPP SVGEVGR+GAP RREIGHG LAERAL V+P+ FPYTIR+ES IT
Sbjct: 380 -NRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLESNIT 438
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCGGCLAL DAGV IK +AG+AMG++L+ + F +ILSDI G ED
Sbjct: 439 ESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERF------IILSDILGIED 492
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKV G+++GITAFQMDIKV GIT+ +M+ AL+QAK+GR HIL +ML P
Sbjct: 493 ALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLAVCPTYKG 552
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S++AP I +++KP KI ++IG GGK++++IIE+TGV+ ID +D G V I A DL S+
Sbjct: 553 EMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQ-IDIDDTGLVNIAAIDLVSI 611
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+KAII LT +G IY I SIAP+GVFVEI PG+EGLCHISE N + ++
Sbjct: 612 EKAKAIIHGLTAEIEIGRIYSGKAI-SIAPFGVFVEILPGKEGLCHISEFDVNRINSLDE 670
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VK GD++ VK++++N++GQ++LSR+A L
Sbjct: 671 FVKQGDMLMVKVLDINERGQIKLSRKATL 699
>gi|337292427|emb|CCB90450.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila
2032/99]
Length = 698
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/746 (49%), Positives = 500/746 (67%), Gaps = 55/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S+K+ G+ +I ETG + RQA+GAV V GET+++ S C P E DF PL V+YQE
Sbjct: 5 SMKVVVGEEEITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+F++AG+T GGF KREGR + E LVCRLIDRP+RP +G+Y +TQ+LS+V SYDG++
Sbjct: 65 KFASAGKTLGGFIKREGRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVWSYDGVNS 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PDALA+ AA A+ +S++P K + VRVG++ +FI+NPT + E S LDL++AG++DA
Sbjct: 125 PDALAICAASAALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVLDLMIAGTEDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LMIEGYC FL+EE +I+A+ +G ++ I ++ + GKPK L +K E+
Sbjct: 185 VLMIEGYCKFLTEEQVIEAISIGHQGIQTICRALENWRQEVGKPKNLSKLKPLAKEVIDA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
VEE+ ++L +VLQI +K R +A ++++V L G
Sbjct: 245 VEELVKDDLNQVLQIVDKKEREEAFDQIKKRVNETLCPEG-------------------- 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
EEV PK F ++V FK+V+S +RR IV+ +RS
Sbjct: 285 ----EEV--------------PK--------FEALEVAKAFKKVSSGHMRRMIVKENKRS 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RPI GLLPR HG +LFTRGETQ++A+ TLG MAQR ++L + +
Sbjct: 319 DGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYEDLNGEGS-RS 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
FYLQY FPP SVGEVGR+G P RRE+GHG LAERAL +LPS +FPYTIR+ES ITESN
Sbjct: 378 FYLQYFFPPFSVGEVGRVGPPGRREVGHGKLAERALASILPSKEEFPYTIRLESNITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLA+ DAGVPI ++G+AMG++L+ + + ILSDI G EDA G
Sbjct: 438 GSSSMASVCGGCLAMMDAGVPITRPVSGIAMGLILEENHY------TILSDILGIEDALG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKV G+++GITAFQMDIKV GIT+ +M+ AL QAK+GR HIL +M + P P +S
Sbjct: 492 DMDFKVTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEKMFEACPEPKKQMS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
K+AP I ++KVKP KI IIG GGK++++IIEETG E ID +D+G V I++ +L L+K+
Sbjct: 552 KYAPRIEVLKVKPSKIGTIIGPGGKQIRAIIEETGAE-IDIDDEGFVTISSSNLDGLQKA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K II +LT +G +Y +I S+ P+G+FVEI PG+EGLCHISE + +VVK
Sbjct: 611 KRIIEDLTAEVEIGKVYEG-KITSVVPFGIFVEILPGKEGLCHISEFDTQRTNDLNEVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD V VK++++N++GQL LSR+ LL
Sbjct: 670 VGDNVRVKVMDINERGQLVLSRKVLL 695
>gi|297620923|ref|YP_003709060.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
86-1044]
gi|297376224|gb|ADI38054.1| polyribonucleotide nucleotidyltransferase [Waddlia chondrophila WSU
86-1044]
Length = 698
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/746 (49%), Positives = 499/746 (66%), Gaps = 55/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S+K+ G+ +I ETG + RQA+GAV V GET+++ S C P E DF PL V+YQE
Sbjct: 5 SMKVVVGEEEITFETGQIARQANGAVVVKSGETMLFCSACATAEPLENVDFLPLRVDYQE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+F++AG+T GGF KREGR + E LVCRLIDRP+RP +G+Y +TQ+LS+V SYDG++
Sbjct: 65 KFASAGKTLGGFIKREGRPTERETLVCRLIDRPIRPLFEEGYYQDTQLLSYVWSYDGVNS 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PDALA+ AA A+ +S++P K + VRVG++ +FI+NPT + E S LDL++AG++DA
Sbjct: 125 PDALAICAASAALTISDIPLKKAVGAVRVGMIDGQFILNPTVEHQEKSVLDLMIAGTEDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LMIEGYC FL+EE +I+A+ +G ++ I ++ + GKPK L +K E+
Sbjct: 185 VLMIEGYCKFLTEEQVIEAISIGHQGIQTICRALENWRQEVGKPKNLSKLKPLAKEVIDA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
VEE+ ++L +VLQI +K R +A ++++V L G
Sbjct: 245 VEELVKDDLNQVLQIVDKKEREEAFDQIKKRVNETLCPEG-------------------- 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
EE PK F ++V FK+V+S +RR IV+ +RS
Sbjct: 285 ----EEA--------------PK--------FEALEVAKAFKKVSSGHMRRMIVKENKRS 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RPI GLLPR HG +LFTRGETQ++A+ TLG MAQR ++L + +
Sbjct: 319 DGRATNQVRPIWIEQGLLPRTHGCSLFTRGETQTVAICTLGGNNMAQRYEDLNGEGS-RS 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
FYLQY FPP SVGEVGR+G P RRE+GHG LAERAL +LPS +FPYTIR+ES ITESN
Sbjct: 378 FYLQYFFPPFSVGEVGRVGPPGRREVGHGKLAERALASILPSKEEFPYTIRLESNITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLA+ DAGVPI ++G+AMG++L+ + + ILSDI G EDA G
Sbjct: 438 GSSSMASVCGGCLAMMDAGVPITRPVSGIAMGLILEENHY------TILSDILGIEDALG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKV G+++GITAFQMDIKV GIT+ +M+ AL QAK+GR HIL +M + P P +S
Sbjct: 492 DMDFKVTGDKNGITAFQMDIKVEGITIDIMRAALAQAKEGRIHILEKMFEACPEPKKQMS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
K+AP I ++KVKP KI IIG GGK++++IIEETG E ID +D+G V I++ +L L+K+
Sbjct: 552 KYAPRIEVLKVKPSKIGTIIGPGGKQIRAIIEETGAE-IDIDDEGFVTISSSNLDGLQKA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K II +LT +G +Y +I S+ P+G+FVEI PG+EGLCHISE + +VVK
Sbjct: 611 KRIIEDLTAEVEIGKVYEG-KITSVVPFGIFVEILPGKEGLCHISEFDTQRTNDLNEVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD V VK++++N++GQL LSR+ LL
Sbjct: 670 VGDNVRVKVMDINERGQLVLSRKVLL 695
>gi|95932676|gb|ABF57675.1| chloroplast polyribonucleotide phosphorylase [Chlamydomonas
reinhardtii]
Length = 854
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/824 (45%), Positives = 511/824 (62%), Gaps = 57/824 (6%)
Query: 19 SHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPEVSEPV 78
S + +R + +S+ S + + R + L RR A+ P P
Sbjct: 28 SSLATGSRSAVHAASSICSSSGANARTSLRRMRALPGRRGMHI-----AAQLAPATYAPP 82
Query: 79 LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP 138
+DA V + +P G ++I +ETG +GRQA+GA+ T GET++Y + C + P+
Sbjct: 83 KADA-------VILTLP-GGKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGD 134
Query: 139 SDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQI 198
F PL VNY ERFSAAGRTSGGF KR+GR +D EVLV RL+DRP+RP KG+ ++TQI
Sbjct: 135 GSFTPLTVNYAERFSAAGRTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQI 194
Query: 199 LSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDK-FIVNPTTQEMED 257
L WVLSYDG++ P+ LA+TAA A+ +S++P K +AGVRVG+ D FI+NPT +EME
Sbjct: 195 LEWVLSYDGVNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMET 254
Query: 258 SQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML 317
S+LDL++AG+ DA+LMIEG+CDFL+EE +I+A+ G +A+ + ++++A + GKPK
Sbjct: 255 SRLDLMVAGTRDAVLMIEGFCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGKPKRT 314
Query: 318 DTIKLPPPELYKHVEEIAGEELVKVLQ--IKNKIPRRKALSSLEEKVLTILSENGYVSKD 375
D + P EL + E+ G+ L + + ++ + + + +E+G S
Sbjct: 315 DAVVTVPEELESRLMELVGDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGS 374
Query: 376 ETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVT 435
ETVG R TP+ S + + V
Sbjct: 375 ETVGGNGN---------------------------GGGGRSYTPLQIS-----MALEAVE 402
Query: 436 SKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQM 495
S+ +R +++ R+DGR IRP++ R GLLPR HGSALFTRGETQS+ V TLG
Sbjct: 403 SRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSICVATLGSAND 462
Query: 496 AQRIDNLESDD----EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
A R D + D E RFYLQY FPPSSVGE GR GAP RRE+GHG LA+RAL P+LP
Sbjct: 463 ALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGELAQRALAPILP 522
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
FPYT+RVESTITESNGSSSMASVCGGCLA+ DAGVPI +AG+AMG++L+++
Sbjct: 523 DPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAMGLILESN--- 579
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
G +LSDI GSEDA GDMDFKVAG+ D ITAFQMDIKV GITL +M KALQQAK GR
Sbjct: 580 --GRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQAKAGR 637
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
RHIL +M KC+PPP+N+LS HAP + +++ P+K +IGSGG+ +K I + +G AID
Sbjct: 638 RHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGATAIDI 697
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
++ G V + A + K+ + L P G I+RN + +A +G FVE+ PGR+GL
Sbjct: 698 DESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCPGRQGL 757
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
H+SEL VVKVGDL+DV ++ V D G+L LSR+A+
Sbjct: 758 VHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAV 801
>gi|440537377|emb|CCP62891.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L1/440/LN]
gi|440541824|emb|CCP67338.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L3/404/LN]
Length = 695
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/741 (48%), Positives = 471/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + +IAGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LLPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPLLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|76789587|ref|YP_328673.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
A/HAR-13]
gi|237803274|ref|YP_002888468.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
B/Jali20/OT]
gi|123606542|sp|Q3KKJ7.1|PNP_CHLTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76168117|gb|AAX51125.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
A/HAR-13]
gi|231274508|emb|CAX11304.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
B/Jali20/OT]
Length = 695
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGA+ V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAILVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + +IAGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|330443786|ref|YP_004376772.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
E58]
gi|328806896|gb|AEB41069.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pecorum
E58]
Length = 693
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/738 (48%), Positives = 475/738 (64%), Gaps = 59/738 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R ++ ETG + RQA G+V V +T+++TSVC AD+ SE SDF P V+YQE+FS+ G+T
Sbjct: 14 RVLIFETGKIARQAGGSVVVRSQDTLVFTSVCAADL-SETSDFLPFRVDYQEKFSSTGKT 72
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR + E+LV RLIDR LRP+L + QILS+V SYDG PD LA+
Sbjct: 73 LGGFIKREGRPTEKEILVSRLIDRSLRPSLPNRLMQDIQILSYVWSYDGQTLPDPLAICG 132
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
AG A+ALS +P + +++GVR+G + ++IVNPT E+++S DL+LAG+++AILMIEG+C
Sbjct: 133 AGAALALSNIPQNNIVSGVRIGYIDGQWIVNPTKTELDNSPFDLVLAGTENAILMIEGHC 192
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
F +EE +++A+ G + I +K + GK K D + P E++ VE +
Sbjct: 193 AFFTEEQVLEAIDYGHKHIITICKGLKDWQQRVGKEKNFDAVLPLPKEVFTAVENRIAQP 252
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
L + I+ K A +EE +L+++ ++D+++
Sbjct: 253 LPSLFDIEGKQALEAASQKMEE-------------------------ELIQELEKDDKI- 286
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
FS ++K FK + S +R I E R+D R I
Sbjct: 287 -----------------------FSAFNIKSAFKALKSDSMRTLIRERKIRADKRALTTI 323
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPIS LLPR HGS LFTRGETQ++AV TLG++ MAQR +NL + K FYLQYSFP
Sbjct: 324 RPISIEVALLPRTHGSCLFTRGETQTVAVCTLGNETMAQRYENLNGEGSSK-FYLQYSFP 382
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES ITESNGSSSMASV
Sbjct: 383 PFSVGEVGRIGSPGRREIGHGKLAEKALAHALPDATQFPYTIRIESNITESNGSSSMASV 442
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CGGCLAL DAGVPIK IAG+AMG++LD +E +ILSDI+G ED GDMDFKVAG
Sbjct: 443 CGGCLALMDAGVPIKTPIAGIAMGLILDAEE------AIILSDISGLEDHLGDMDFKVAG 496
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
N +GITAFQMDIK+ GITL +MK+AL QAK+GR+ IL M + P + LS++AP I
Sbjct: 497 NLEGITAFQMDIKIEGITLDIMKQALAQAKEGRQEILRIMHENLAAPKSDLSQYAPRIET 556
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M++KP KI +IG GGK+++ IIEETGV+ ID D GTV I+A ++ K+K II L
Sbjct: 557 MQIKPSKIATVIGPGGKQIRQIIEETGVQ-IDINDFGTVSISAVSSEAINKAKKIIEGLV 615
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG +YR I SI P+G F+EI PG+EGLCHISE S + + D+ K GD++DVK
Sbjct: 616 GEVEVGKVYRG-RIVSIVPFGAFIEILPGKEGLCHISEFSKQRIEQVSDLFKEGDMIDVK 674
Query: 819 LIEVNDKGQLRLSRRALL 836
LI +N+KGQL+LS +A L
Sbjct: 675 LISINEKGQLKLSHKATL 692
>gi|237805195|ref|YP_002889349.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273495|emb|CAX10411.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|438690781|emb|CCP50038.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
A/7249]
gi|438693239|emb|CCP48241.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
A/363]
Length = 695
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGA+ V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAILVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + +IAGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEISRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|166154186|ref|YP_001654304.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
434/Bu]
gi|166155061|ref|YP_001653316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335431|ref|ZP_07223675.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2tet1]
gi|339625601|ref|YP_004717080.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
L2c]
gi|226702634|sp|B0B971.1|PNP_CHLT2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702636|sp|B0BAV0.1|PNP_CHLTB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|165930174|emb|CAP03658.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
434/Bu]
gi|165931049|emb|CAP06612.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|339460504|gb|AEJ77007.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
L2c]
gi|440526660|emb|CCP52144.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/8200/07]
gi|440536484|emb|CCP61997.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/795]
gi|440538266|emb|CCP63780.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L1/1322/p2]
gi|440539156|emb|CCP64670.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L1/115]
gi|440540046|emb|CCP65560.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L1/224]
gi|440540936|emb|CCP66450.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2/25667R]
gi|440542713|emb|CCP68227.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/UCH-2]
gi|440543604|emb|CCP69118.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Canada2]
gi|440544495|emb|CCP70009.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/LST]
gi|440545385|emb|CCP70899.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Ams1]
gi|440546275|emb|CCP71789.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/CV204]
gi|440914537|emb|CCP90954.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Ams2]
gi|440915427|emb|CCP91844.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Ams3]
gi|440916320|emb|CCP92737.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Canada1]
gi|440917212|emb|CCP93629.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Ams4]
gi|440918103|emb|CCP94520.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
L2b/Ams5]
Length = 695
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGAV V ET +++S C A + SE F P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVGFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + +IAGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LLPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPLLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|15605577|ref|NP_220363.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D/UW-3/CX]
gi|385240393|ref|YP_005808235.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/9768]
gi|385241321|ref|YP_005809162.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/11222]
gi|385243170|ref|YP_005811009.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/9301]
gi|385244047|ref|YP_005811893.1| Polynucleotide adenylyltransferase [Chlamydia trachomatis D-EC]
gi|385244927|ref|YP_005812771.1| Polynucleotide adenylyltransferase [Chlamydia trachomatis D-LC]
gi|385246778|ref|YP_005815600.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/11074]
gi|81345334|sp|O84849.1|PNP_CHLTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|3329314|gb|AAC68439.1| Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis
D/UW-3/CX]
gi|296436398|gb|ADH18572.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/9768]
gi|296437329|gb|ADH19499.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/11222]
gi|296438257|gb|ADH20418.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/11074]
gi|297140758|gb|ADH97516.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/9301]
gi|297748970|gb|ADI51516.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
D-EC]
gi|297749850|gb|ADI52528.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
D-LC]
gi|440525771|emb|CCP51022.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
K/SotonK1]
gi|440528447|emb|CCP53931.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D/SotonD5]
gi|440529338|emb|CCP54822.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D/SotonD6]
Length = 695
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|255317984|ref|ZP_05359230.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
6276s]
gi|440533806|emb|CCP59316.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534700|emb|CCP60210.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
Ia/SotonIa3]
Length = 695
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKETVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|255311683|ref|ZP_05354253.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
6276]
Length = 695
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLTSPKETVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|376282854|ref|YP_005156680.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
A2497]
gi|385270586|ref|YP_005813746.1| Polynucleotide adenylyltransferase [Chlamydia trachomatis A2497]
gi|347975726|gb|AEP35747.1| Polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
A2497]
gi|371908884|emb|CAX09517.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
A2497]
gi|438691866|emb|CCP49140.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
A/5291]
Length = 695
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/741 (48%), Positives = 470/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGA+ V ET +++S C A + SE +F P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAILVKMNETWVFSSACAASL-SEAVNFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + +IAGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIIAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKATGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEISRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS +A L +
Sbjct: 675 KLLSINEKGQLKLSHKATLED 695
>gi|440532912|emb|CCP58422.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
G/SotonG1]
Length = 695
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/741 (48%), Positives = 469/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 DKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISDFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS + L +
Sbjct: 675 KLLSINEKGQLKLSHKVTLED 695
>gi|255349247|ref|ZP_05381254.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
70]
gi|255503784|ref|ZP_05382174.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
70s]
Length = 695
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/741 (48%), Positives = 469/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
++ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 NKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIAFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISGFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS RA L +
Sbjct: 675 KLLSINEKGQLKLSHRATLED 695
>gi|440532020|emb|CCP57530.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
F/SotonF3]
Length = 695
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/741 (48%), Positives = 469/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
++ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 NKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISGFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS RA L +
Sbjct: 675 KLLSINEKGQLKLSHRATLED 695
>gi|255507465|ref|ZP_05383104.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D(s)2923]
gi|385242248|ref|YP_005810088.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/11023]
gi|385245858|ref|YP_005814681.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/150]
gi|386263200|ref|YP_005816479.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
Sweden2]
gi|389858539|ref|YP_006360781.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
F/SW4]
gi|389859415|ref|YP_006361656.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
E/SW3]
gi|389860291|ref|YP_006362531.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
F/SW5]
gi|289525888|emb|CBJ15370.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
Sweden2]
gi|296435474|gb|ADH17652.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/150]
gi|296439191|gb|ADH21344.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/11023]
gi|380249611|emb|CCE14908.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
F/SW5]
gi|380250486|emb|CCE14019.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
F/SW4]
gi|380251364|emb|CCE13130.1| polyribonucleotide nucleotidyltransferase [Chlamydia trachomatis
E/SW3]
gi|440527556|emb|CCP53040.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
D/SotonD1]
gi|440530230|emb|CCP55714.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/SotonE4]
gi|440531127|emb|CCP56611.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/SotonE8]
gi|440535596|emb|CCP61106.1| polynucleotide phosphorylase/polyadenylase [Chlamydia trachomatis
E/Bour]
Length = 695
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/741 (48%), Positives = 469/741 (63%), Gaps = 58/741 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
++ ++ ETG + RQASGAV V ET +++S C A + SE DF P V+YQE+FS+AGR
Sbjct: 13 NKTLIFETGKIARQASGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGR 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+LV RL+DR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEREILVSRLMDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLVG K+++NPT E+ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVGGKWVINPTRDELSASRLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K + P ++ V + E
Sbjct: 192 CDFLTEEQVLEAIVFGQTYIAKICDAIEAWQKAIGKQKNFSAVLDMPEDVQNVVSDFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L ++K +A LEE V I +L+++E+ D
Sbjct: 252 KFEKALSFRDKEALEQASKELEESV---------------------IANLVQEENSD--- 287
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 288 ------------------------FSLLNVKAAFKTAKSNQMRALIQDLGIRVDGRTTTE 323
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 324 IRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFEDLNGDG-AARFYLQYFF 382
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPY IR+ES ITESNGSSSMAS
Sbjct: 383 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPETSRFPYIIRLESNITESNGSSSMAS 442
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCLAL DAGVPIK +AG+AMG++LD D+ +ILSDI+G ED GDMDFKVA
Sbjct: 443 VCGGCLALMDAGVPIKAPVAGIAMGLILDRDQ------AIILSDISGIEDHLGDMDFKVA 496
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G GITAFQMDIK+ GIT +M++AL QAK GR HIL M + P ++SK+AP I
Sbjct: 497 GTAKGITAFQMDIKIEGITHKIMEQALAQAKQGRSHILNLMTQVLASPKGTVSKYAPRIE 556
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D DDG + I A S+ K+K +I L
Sbjct: 557 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDDGVINIAASTQESINKAKELIEGL 615
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG +Y N + SIA +GVFVE+ PG+EGLCHISELS + VK GD + V
Sbjct: 616 TGEVEVGKVY-NGRVTSIATFGVFVEVLPGKEGLCHISELSKQKVDNISGFVKEGDKLAV 674
Query: 818 KLIEVNDKGQLRLSRRALLPE 838
KL+ +N+KGQL+LS RA L +
Sbjct: 675 KLLSINEKGQLKLSHRATLED 695
>gi|329943105|ref|ZP_08291879.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
gi|332287687|ref|YP_004422588.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
gi|384450846|ref|YP_005663446.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
gi|384451840|ref|YP_005664438.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
01DC11]
gi|384452814|ref|YP_005665411.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
08DC60]
gi|384453793|ref|YP_005666389.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
C19/98]
gi|384454772|ref|YP_005667367.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
02DC15]
gi|392376918|ref|YP_004064696.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
RD1]
gi|406593706|ref|YP_006740885.1| S1 RNA binding domain-containing protein [Chlamydia psittaci NJ1]
gi|407454319|ref|YP_006733427.1| S1 RNA binding domain-containing protein [Chlamydia psittaci 84/55]
gi|407455593|ref|YP_006734484.1| S1 RNA binding domain-containing protein [Chlamydia psittaci GR9]
gi|407458330|ref|YP_006736635.1| S1 RNA binding domain-containing protein [Chlamydia psittaci
WS/RT/E30]
gi|407459578|ref|YP_006737681.1| S1 RNA binding domain-containing protein [Chlamydia psittaci M56]
gi|407460949|ref|YP_006738724.1| S1 RNA binding domain-containing protein [Chlamydia psittaci WC]
gi|313848261|emb|CBY17262.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
RD1]
gi|325507208|gb|ADZ18846.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
gi|328814652|gb|EGF84642.1| S1 RNA binding domain protein [Chlamydophila psittaci Cal10]
gi|328914940|gb|AEB55773.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
6BC]
gi|334692574|gb|AEG85793.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
C19/98]
gi|334693550|gb|AEG86768.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
01DC11]
gi|334694529|gb|AEG87746.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
02DC15]
gi|334695503|gb|AEG88719.1| polyribonucleotide nucleotidyltransferase [Chlamydophila psittaci
08DC60]
gi|405781078|gb|AFS19828.1| S1 RNA binding domain protein [Chlamydia psittaci 84/55]
gi|405782136|gb|AFS20885.1| S1 RNA binding domain protein [Chlamydia psittaci GR9]
gi|405785460|gb|AFS24206.1| S1 RNA binding domain protein [Chlamydia psittaci WS/RT/E30]
gi|405786452|gb|AFS25197.1| S1 RNA binding domain protein [Chlamydia psittaci M56]
gi|405786671|gb|AFS25415.1| S1 RNA binding domain protein [Chlamydia psittaci WC]
gi|405789578|gb|AFS28320.1| S1 RNA binding domain protein [Chlamydia psittaci NJ1]
Length = 694
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/751 (47%), Positives = 476/751 (63%), Gaps = 60/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A++ E DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEAVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P + ++AGVRVG V ++++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE +I+A++ G + I +K + GK K I P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEKNTSQIVSLPEEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + + V +L+IK K A LE +V+ +
Sbjct: 242 QSAVNALVEGKFVDLLKIKEKKAFEAASKQLENEVV----------------------EQ 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+E ++K+ FK+ S F+R I E G
Sbjct: 280 LQEENE---------------------------VFTEFNIKIAFKQAKSNFMRSLIREQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IRPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 IRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES+IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPVKFPYTIRIESSIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++LD D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAKDGR+ IL M + P
Sbjct: 486 HLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQDILETMKQALAAPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + S+ P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDNVGD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VK GD + VKL+ +N+KGQ +LS +A L E
Sbjct: 664 FVKQGDTLTVKLLSINEKGQYKLSHKATLSE 694
>gi|406592648|ref|YP_006739828.1| S1 RNA binding domain-containing protein [Chlamydia psittaci CP3]
gi|406594339|ref|YP_006741926.1| S1 RNA binding domain-containing protein [Chlamydia psittaci MN]
gi|410858701|ref|YP_006974641.1| polyribonucleotide nucleotidyltransferase [Chlamydia psittaci
01DC12]
gi|405782771|gb|AFS21519.1| S1 RNA binding domain protein [Chlamydia psittaci MN]
gi|405788520|gb|AFS27263.1| S1 RNA binding domain protein [Chlamydia psittaci CP3]
gi|410811596|emb|CCO02249.1| polyribonucleotide nucleotidyltransferase [Chlamydia psittaci
01DC12]
Length = 694
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/751 (47%), Positives = 476/751 (63%), Gaps = 60/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A++ E DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEAVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P + ++AGVRVG V ++++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE +I+A++ G + I +K + GK K I P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEKNTSQIVSLPEEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + + V +L+IK K A LE +V+ +
Sbjct: 242 QSAVNALVEGKFVDLLKIKEKKAFEAASKQLENEVV----------------------EQ 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+E ++K+ FK+ S F+R I E G
Sbjct: 280 LQEENE---------------------------VFTEFNIKIAFKQAKSNFMRSLIREQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IRPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 IRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES+IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPVKFPYTIRIESSIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++LD D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAKDGR+ IL M + P
Sbjct: 486 HLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQDILETMKQALAAPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + S+ P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDNVGD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VK GD + VKL+ +N+KGQ +LS +A L E
Sbjct: 664 FVKQGDTLTVKLLSINEKGQYKLSHKATLSE 694
>gi|15834850|ref|NP_296609.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
Nigg]
gi|270285016|ref|ZP_06194410.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
Nigg]
gi|270289041|ref|ZP_06195343.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
Weiss]
gi|301336414|ref|ZP_07224616.1| polynucleotide phosphorylase/polyadenylase [Chlamydia muridarum
MopnTet14]
gi|81548983|sp|Q9PL77.1|PNP_CHLMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7190270|gb|AAF39102.1| polyribonucleotide nucleotidyltransferase [Chlamydia muridarum
Nigg]
Length = 693
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/739 (47%), Positives = 472/739 (63%), Gaps = 59/739 (7%)
Query: 98 DRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGR 157
D+ ++ ETG + RQA+GAV V ET +++S C A + SE DF P V+YQE+FS+AG+
Sbjct: 13 DKTLIFETGKIARQANGAVLVKMNETWVFSSACAASL-SEAVDFLPFRVDYQEKFSSAGK 71
Query: 158 TSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217
TSGGF KREGR + E+L+ RLIDR LRP+ + Q+LS+V SYDG PD LA+
Sbjct: 72 TSGGFLKREGRPSEKEILISRLIDRSLRPSFPNRLMQDIQVLSYVWSYDGKTLPDPLAIC 131
Query: 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+A+SEVP + ++AGVRVGLV K++VNPT E++ S+LDL++AG+ A+LMIEG+
Sbjct: 132 GASAALAISEVPQNCIVAGVRVGLVEGKWVVNPTKDELDASKLDLVMAGTASAVLMIEGH 191
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
CDFL+EE +++A+ GQ + +I + ++A + GK K L + P ++ V E
Sbjct: 192 CDFLTEEQVLEAIAFGQKYIAKICDAIEAWQKAIGKEKQLSAVLDLPEDVQNVVSNFIRE 251
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
+ K L +++ + LEE V + +L+++E +
Sbjct: 252 KFEKALSFRDRDALEQVSKELEESV---------------------VANLVQEESD---- 286
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
FS ++VK FK S +R I + G R DGR
Sbjct: 287 ------------------------FSLLNVKAAFKNAKSNQMRALIRDLGIRVDGRSTTE 322
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
IRPIS LPR HGS LFTRGETQS+AV TLG + MAQR ++L D RFYLQY F
Sbjct: 323 IRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMAQRFEDLNGDG-AARFYLQYFF 381
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGEVGRIG+P RREIGHG LAE+AL VLP + FPYT+RVES ITESNGSSSMAS
Sbjct: 382 PPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEASRFPYTVRVESNITESNGSSSMAS 441
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCGGCL+L DAGVPIK +AG+AMG++LD D+ ++LSDI+G ED GDMDFKVA
Sbjct: 442 VCGGCLSLMDAGVPIKAPVAGIAMGLILDQDK------AIVLSDISGIEDHLGDMDFKVA 495
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G E+GITAFQMDIKV GIT +M++AL QAK GR HIL M + P++S+S++AP I
Sbjct: 496 GTEEGITAFQMDIKVEGITHEIMEQALAQAKQGRSHILNLMTQVMSSPNDSVSRYAPRIE 555
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
M++ KI +IG GGK+++ IIE +G + +D D+G + I+A S++K+K +I L
Sbjct: 556 TMQINTSKIATVIGPGGKQIRQIIERSGAQ-VDINDNGLINISANTQESIDKAKELIEGL 614
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
T VG IY N + S+ +G FVE+ PG+EGLCHISELS + D VK GD + V
Sbjct: 615 TGEVEVGKIY-NGRVTSVVAFGAFVEVLPGKEGLCHISELSKQKVDNVADFVKEGDRLAV 673
Query: 818 KLIEVNDKGQLRLSRRALL 836
KL+ +N+KGQL+LS +A L
Sbjct: 674 KLLSINEKGQLKLSHKATL 692
>gi|449071406|ref|YP_007438486.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila psittaci
Mat116]
gi|449039914|gb|AGE75338.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila psittaci
Mat116]
Length = 694
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/751 (47%), Positives = 475/751 (63%), Gaps = 60/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A++ E DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEAVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P + ++AGVRVG V ++++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE +I+A++ G + I +K + GK K I P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEKNTSQIVSLPEEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + + V +L+IK K A LE +V+ +
Sbjct: 242 QSAVNALVEGKFVDLLKIKEKKAFEAASKQLENEVV----------------------EQ 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+E ++K+ FK+ S F+R I E G
Sbjct: 280 LQEENE---------------------------VFTEFNIKIAFKQAKSNFMRSLIREQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IR IS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 IRSDGRSITTIRHISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES+IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPVKFPYTIRIESSIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++LD D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAKDGR+ IL M + P
Sbjct: 486 HLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQDILETMKQALAAPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + S+ P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDNVGD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VK GD + VKL+ +N+KGQ +LS +A L E
Sbjct: 664 FVKQGDTLTVKLLSINEKGQYKLSHKATLSE 694
>gi|29840519|ref|NP_829625.1| polynucleotide phosphorylase [Chlamydophila caviae GPIC]
gi|75539485|sp|Q822C1.1|PNP_CHLCV RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29834868|gb|AAP05503.1| polyribonucleotide nucleotidyltransferase [Chlamydophila caviae
GPIC]
Length = 694
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/740 (47%), Positives = 465/740 (62%), Gaps = 59/740 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
+ ++ ETG + RQA+GAV ET +++SVC A++ EP DF PL V+YQE+FS+ G+T
Sbjct: 14 KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEPVDFLPLRVDYQEKFSSIGKT 72
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR + E+L RLIDR +RP+L + Q+LS+V SYDG+ PD +A+
Sbjct: 73 LGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQVLSYVWSYDGVTLPDPIAICG 132
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A+A+S++P V+AGVRVG V + ++VNPT EM+ S+++L+LAG+++AILMIEG+C
Sbjct: 133 VSAALAISDIPQISVVAGVRVGFVNNSWVVNPTKAEMDVSRMELVLAGTENAILMIEGHC 192
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
DFL+EE +I+A++ G + I +K L + GK K D I P E+ V +
Sbjct: 193 DFLTEEQVIEAIEFGHKHIATICRAIKDLQQKVGKKKNSDAIVPLPEEVQSSVNTFVEGK 252
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+L+IK K A LE+ E + LE+ +
Sbjct: 253 FADLLKIKEKKAFEAASKQLEK---------------------EIVEKFLEENE------ 285
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
+F+ +++K FK+ S ++R I E RSDGR I
Sbjct: 286 ----------------------IFTALNIKTAFKQAKSDYMRALIREQSVRSDGRAITTI 323
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L + + +FYLQY FP
Sbjct: 324 RPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEG-LAKFYLQYFFP 382
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES ITESNGSSSMASV
Sbjct: 383 PFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPAKFPYTIRIESNITESNGSSSMASV 442
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CGGCLAL DAGVPIK IAG+AMG++LD D ILSDI+G ED GDMDFKVAG
Sbjct: 443 CGGCLALMDAGVPIKTPIAGIAMGLILDNDHV------TILSDISGLEDYLGDMDFKVAG 496
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
N +GITAFQMDIKV GIT +M+ AL QAK GR+HIL M + P LS++AP I
Sbjct: 497 NTEGITAFQMDIKVEGITPTIMQAALAQAKAGRQHILDIMKEALAAPKTDLSQYAPRIET 556
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++EK+K++I L
Sbjct: 557 MQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAIEKAKSMIEGLV 615
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG IY + SI P+G FVEI PG+EGLCHISE S + D VK GD++ VK
Sbjct: 616 GEVEVGKIYEG-RVTSIVPFGAFVEILPGKEGLCHISEFSKQRIENVGDFVKQGDILAVK 674
Query: 819 LIEVNDKGQLRLSRRALLPE 838
L+ +N+KGQ +LS +A L E
Sbjct: 675 LLSINEKGQYKLSHKATLSE 694
>gi|62185343|ref|YP_220128.1| polynucleotide phosphorylase [Chlamydophila abortus S26/3]
gi|81312506|sp|Q5L5B4.1|PNP_CHLAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|62148410|emb|CAH64177.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
S26/3]
Length = 694
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/751 (47%), Positives = 473/751 (62%), Gaps = 60/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A++ E DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEAVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P + ++AGVRVG V ++++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE +I+A++ G + I +K + GK K I P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKHIGKEKNTSGIVSLPEEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + V +L+IK K A LE +V+ +
Sbjct: 242 QSAVNTFVEGKFVDLLKIKEKKAFEAASKQLENEVI----------------------EQ 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+ ++K+ FK+ S F+R I E G
Sbjct: 280 LQEENE---------------------------VFTAFNIKIAFKQAKSNFIRGLIREQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IRPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPMKFPYTIRIESNIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++L+ D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILEDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAK+GR+ IL M + P
Sbjct: 486 HLGDMDFKVAGNTEGITAFQMDIKVEGITPDIMRAALAQAKEGRQDILETMKQALAAPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + S+ P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDNVGD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VK GD + VKL+ +N+KGQ +LS +A L E
Sbjct: 664 FVKQGDTLTVKLLSINEKGQYKLSHKATLSE 694
>gi|424825383|ref|ZP_18250370.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
LLG]
gi|333410482|gb|EGK69469.1| polyribonucleotide nucleotidyltransferase [Chlamydophila abortus
LLG]
Length = 694
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/751 (47%), Positives = 473/751 (62%), Gaps = 60/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A++ E DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEAVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDIQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P + ++AGVRVG V ++++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE +I+A++ G + I +K + GK K I P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKHIGKEKNTSGIVSLPEEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + V +L+IK K A LE +V+ +
Sbjct: 242 QSAVNTFVEGKFVDLLKIKEKKAFEAASKQLENEVI----------------------EQ 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+ ++K+ FK+ S F+R I E G
Sbjct: 280 LQEENE---------------------------VFTAFNIKVAFKQAKSNFIRGLIREQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IRPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPMKFPYTIRIESNIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++L+ D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILEDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAK+GR+ IL M + P
Sbjct: 486 HLGDMDFKVAGNTEGITAFQMDIKVEGITPDIMRAALAQAKEGRQDILETMKQALAAPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + S+ P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDNVGD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VK GD + VKL+ +N+KGQ +LS +A L E
Sbjct: 664 FVKQGDTLTVKLLSINEKGQYKLSHKATLSE 694
>gi|407457009|ref|YP_006735582.1| S1 RNA binding domain-containing protein [Chlamydia psittaci VS225]
gi|405784270|gb|AFS23017.1| S1 RNA binding domain protein [Chlamydia psittaci VS225]
Length = 724
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/738 (47%), Positives = 467/738 (63%), Gaps = 60/738 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A++ E DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAANL-EEAVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P + ++AGVRVG V ++++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQTSIVAGVRVGFVNNRWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE +I+A++ G + I +K + GK K I P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKALKDWQKQIGKEKNTSQIVSLPEEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + + V +L+IK K A LE +V+ +
Sbjct: 242 QSAVNALVEGKFVDLLKIKEKKAFEAASKQLENEVV----------------------EQ 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+E ++K+ FK+ S F+R I E G
Sbjct: 280 LQEENE---------------------------VFTEFNIKIAFKQAKSNFMRSLIREQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IRPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 IRSDGRSITTIRPISIETSFLPRTHGSCLFTRGETQTMAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES+IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHTLPDPVKFPYTIRIESSIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++LD D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAKDGR+ IL M + P
Sbjct: 486 HLGDMDFKVAGNTEGITAFQMDIKVEGITPAIMRAALAQAKDGRQDILETMKQALAAPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + S+ P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSVVPFGAFVEILPGKEGLCHISEFSKQRIDNVGD 663
Query: 808 VVKVGDLVDVKLIEVNDK 825
VK GD + VKL+ +N+K
Sbjct: 664 FVKQGDTLTVKLLSINEK 681
>gi|89898059|ref|YP_515169.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila felis
Fe/C-56]
gi|123483690|sp|Q255L4.1|PNP_CHLFF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89331431|dbj|BAE81024.1| polyribonucleotide nucleotidyltransferase [Chlamydophila felis
Fe/C-56]
Length = 694
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/751 (47%), Positives = 473/751 (62%), Gaps = 60/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ +SV + G + ++ ETG + RQA+GAV ET +++SVC A + EP DF PL V+
Sbjct: 4 ETISVTLEEG-KTLVFETGKIARQANGAVLARMQETWVFSSVCAATL-EEPVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+L RLIDR +RP+L + QILS+V SYDG
Sbjct: 62 YQEKFSSIGKTLGGFIKREGRPTEREILTSRLIDRSMRPSLPNRLMQDVQILSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A+A+S++P ++AGVRVG + + ++VNPT EM+ S+++L+LAG+
Sbjct: 122 VTLPDPIAICGVSAALAISDIPQINIVAGVRVGFINNTWVVNPTKAEMDVSRMELVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ AILMIEG+CDF +EE +I+A++ G + I ++ + GK K + P ++
Sbjct: 182 EKAILMIEGHCDFFTEEQVIEAIEFGHKHIVTICKAIEDWQKQIGKEKNTSAVVPLPEQV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + + +LQIK K KA + +++ EN V K
Sbjct: 242 QTAVNTLVEGKFSDLLQIKEK----KAFEAASKQL-----ENDIVEK------------- 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L++E+E +F+ +++K FK+ S ++R I + G
Sbjct: 280 LQEENE---------------------------IFTPLNIKTAFKQAKSDYMRSLIRKQG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RSDGR IRPIS LPR HGS LFTRGETQ++AV TLG + MAQR ++L +
Sbjct: 313 LRSDGRSVTTIRPISIDTSFLPRTHGSCLFTRGETQTVAVCTLGSEAMAQRYEDLNGEG- 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES IT
Sbjct: 372 LAKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDPAKFPYTIRIESNIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPIK IAG+AMG++LD D ILSDI+G ED
Sbjct: 432 ESNGSSSMASVCGGCLALMDAGVPIKTPIAGIAMGLILDDDHV------TILSDISGLED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN +GITAFQMDIKV GIT +M+ AL QAK GR++IL M P
Sbjct: 486 HLGDMDFKVAGNAEGITAFQMDIKVEGITPEIMQAALAQAKSGRQNILETMKATLASPKT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEE GV+ ID D G V I+A ++
Sbjct: 546 DLSQYAPRIETMQIKPNKIATVIGPGGKQIRQIIEEAGVQ-IDINDSGLVSISASSPQAI 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+K+II L VG IY + SI P+G FVEI PG+EGLCHISE S + D
Sbjct: 605 EKAKSIIEGLVGEVEVGKIYEG-RVTSIVPFGAFVEILPGKEGLCHISEFSKQRIENVGD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VK GD++ VKL+ +N+KGQ +LS +A L E
Sbjct: 664 FVKQGDILPVKLLSINEKGQYKLSHKATLSE 694
>gi|303273102|ref|XP_003055912.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461996|gb|EEH59288.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 823
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/751 (48%), Positives = 493/751 (65%), Gaps = 35/751 (4%)
Query: 100 QILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTS 159
Q++VETG +G+QA+GAV V++GET +Y ++C F PL VNY ERFSAAGRTS
Sbjct: 33 QVVVETGKIGKQANGAVIVSEGETQMYVTICAGRDVVADGGFVPLTVNYMERFSAAGRTS 92
Query: 160 GGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAA 219
GG+ KR+G ++HE L+ RL+DRPLRP + K + +ETQIL WVLSYDG DALA+TAA
Sbjct: 93 GGYRKRDGGVREHETLIGRLVDRPLRPMIPKAWAYETQILQWVLSYDGNRSTDALAITAA 152
Query: 220 GIAVALSEVPNSKVIAGVRVGLV-GDKF-IVNPTTQEMEDSQLDLLLAGSDDAILMIEGY 277
A A+S+VP SK + GVRVG + GD IVNPTT++ME+S+LDLLLAG++DA++MIEGY
Sbjct: 153 SAAAAVSDVPLSKPVCGVRVGFLPGDATPIVNPTTEQMENSRLDLLLAGTEDAVMMIEGY 212
Query: 278 CDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGE 337
DFLS + +I A+ G A+ + E+ GK K + + P +Y+ V+ G+
Sbjct: 213 GDFLSVDEMITAIAAGHAAIASVCRELSKWAAEVGKAKATERLLTAPDGIYESVKAAVGD 272
Query: 338 ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
EL + I K R A+ L K +E + L ++ +
Sbjct: 273 ELAVAMAIGKKQIRGAAVERLRSKA------------------IEMVSGLDKENAAYKAS 314
Query: 398 VVDGEVDEGDVH--IKPKSRKS--TPMLFSE------VDVKLVFKEVTSKFLRRRIVEGG 447
++ +H +KP++ ++ P L S DV+L +++ S+ LR I G
Sbjct: 315 ARAAQLPSAHMHALLKPRALRTHARPTLGSHPGTSGPEDVRLACEKIESEALRDMIRSRG 374
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPIS G L R HGS+LFTRGETQ++A TLG + AQR D + D+
Sbjct: 375 TRQDGRDVYTVRPISCEGGFLHRTHGSSLFTRGETQAIAAATLGSQSDAQRFDGIAEMDD 434
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+RFYL Y FPPSSVGE GR+GA SRRE+GHG LAERAL PVLPS ++FP+T+R+ESTIT
Sbjct: 435 -RRFYLHYFFPPSSVGECGRVGAASRREVGHGNLAERALAPVLPSKDEFPFTVRLESTIT 493
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VC GCLALQDAGVPI+ +AG+AMG+VL + G D ++L+DI GSED
Sbjct: 494 ESNGSSSMATVCAGCLALQDAGVPIRRKVAGIAMGLVLGDETKGEDA--IVLTDILGSED 551
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP-- 685
A GDMDFKVAG+ +G++AFQMDIKV GI+LPVM+ AL++A++G HIL EM K P P
Sbjct: 552 ALGDMDFKVAGDGEGMSAFQMDIKVEGISLPVMRTALERAREGLIHILGEMDKADPSPRK 611
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+SK+AP I +++V + I IIG GG+++KSI EET ++ ID +DG +T
Sbjct: 612 GGEMSKYAPRIEVVEVNTKYIGKIIGKGGEQIKSICEETRIDTIDINNDGVCVLTGSYGC 671
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ ++ II+ LT+ P +G IYRN + + +G FVEI PG EGLCH+SEL +A
Sbjct: 672 DMARALEIIAELTIEPEIGKIYRNSRVTKVLEFGAFVEILPGVEGLCHVSELDVTRVANV 731
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
+DVV GD +DVKL+E N++GQ +LSRR +L
Sbjct: 732 KDVVNDGDFIDVKLLETNERGQYKLSRREVL 762
>gi|255073611|ref|XP_002500480.1| predicted protein [Micromonas sp. RCC299]
gi|226515743|gb|ACO61738.1| predicted protein [Micromonas sp. RCC299]
Length = 838
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/758 (47%), Positives = 498/758 (65%), Gaps = 14/758 (1%)
Query: 82 ALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDF 141
AL P+ ++++I G+ ++ VETG +GRQA+GAV VT+GET+IY ++C + F
Sbjct: 46 ALDRTPKTLTLRI--GESEVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGF 103
Query: 142 FPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSW 201
PL VNYQER+SA GRT+GG+ KR+G +++E L+ RL+DRPLRP + KG+ ++TQIL W
Sbjct: 104 VPLTVNYQERYSAVGRTAGGYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEW 163
Query: 202 VLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKF--IVNPTTQEMEDSQ 259
VLSYDG DALA+TAA A A+S+VP K IAGVRVGL+ + ++NPT ++ME S+
Sbjct: 164 VLSYDGARSTDALAITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSR 223
Query: 260 LDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDT 319
LDL+LAG++DA++MIEG+ DFL+ + ++ A++ G +AV ++ A + G+ K
Sbjct: 224 LDLVLAGTEDAVMMIEGFGDFLTTQEMLYAIEKGHEAVANACRDIDAWAKDVGRVKNEAA 283
Query: 320 IKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVG 379
+ + P + V + G EL + + I K R A+ + + + L+ G TV
Sbjct: 284 VLVAPEGVDDAVRALVGAELAEAMAISVKQTRGAAVEGIRARAIESLA--GGDDAKFTVS 341
Query: 380 IVETIPDLLEDEDEDEEVVVDGEVDEG-DVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKF 438
V L +++ G +P R P L E DV+L S
Sbjct: 342 AVRRPAQSLRFAFC--ALLLFSLFPPGPRAFSRPFVRLPPPAL--ENDVRLACGRCESNA 397
Query: 439 LRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQR 498
LR I G R DGR +RPI+ GLLPR HGS+LFTRGETQ++A TLG AQ+
Sbjct: 398 LRSMIRANGVRQDGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQK 457
Query: 499 IDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY 558
+D L +D + +RFYL Y FPPSSVGE GR+GA SRRE+GHG LAERAL PV+P +DFP+
Sbjct: 458 VDGLGNDKD-RRFYLHYFFPPSSVGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPF 516
Query: 559 TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLI 618
T+R+ESTITESNGSSSMA+VC G LALQDAGVPI +AG+AMG++L DE G+ P+I
Sbjct: 517 TVRLESTITESNGSSSMATVCAGSLALQDAGVPITRKVAGIAMGLILG-DESAGE-APVI 574
Query: 619 LSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEM 678
L+DI GSEDA GDMDFKVAG+ DGI+AFQMDIKV GITL V+++AL+ A+ G HIL EM
Sbjct: 575 LTDILGSEDALGDMDFKVAGDGDGISAFQMDIKVEGITLAVLREALESARVGLVHILGEM 634
Query: 679 LKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVK 738
K P P+ +S +AP + +++V + I +IG GG+++K+I E+T ++ ID ++G V
Sbjct: 635 DKADPAPAGRMSAYAPQVEVVEVPTKYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVT 694
Query: 739 ITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELS 798
+T + K+ II +LT+ P VG YRN + + +G FVEI PG EGLCH+SEL
Sbjct: 695 LTGSFGCDMPKAVEIIRSLTVEPEVGKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELD 754
Query: 799 SNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
+A DVV+ G +DVKL+E N++GQ +LSRRA+L
Sbjct: 755 VTRVANVRDVVEEGQTIDVKLLETNERGQFKLSRRAVL 792
>gi|387219263|gb|AFJ69340.1| polyribonucleotide nucleotidyltransferase [Nannochloropsis gaditana
CCMP526]
Length = 853
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 342/766 (44%), Positives = 473/766 (61%), Gaps = 69/766 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
+++ G + + ETG +GR A G+VTV GET++Y S C + P E DF PL ++Y ER
Sbjct: 80 MEVEVGGKILAFETGKIGRSADGSVTVRQGETVVYASACAENKPQE-LDFTPLRIDYFER 138
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
FSAAG TSG + KR+GR D E+LV RLIDRPLRP L + + ETQ+LSWV SYDG+H
Sbjct: 139 FSAAGMTSGSYTKRDGRASDREILVARLIDRPLRPMLTEAWTCETQVLSWVFSYDGVHNS 198
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ +A+ AA AV LS +P +AGV+VG V + +VNPT QEM +S L+L++AG+++ I
Sbjct: 199 EPMAICAASAAVVLSSIPLETPVAGVQVGRVDGRLVVNPTKQEMANSTLNLMVAGTEEGI 258
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LMIEG +FL EE+L+ A++ G A+ +I ++ GKPK L + L PPEL +
Sbjct: 259 LMIEGAAEFLPEEVLLDALREGHAAIADICRALREWGAKVGKPKRLGDLCLAPPELKPLL 318
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+E + + L+ N+ +L +E+ ++ ++G+ +PD
Sbjct: 319 QERYAKAIDAALKSGNRNAYSASLHGIEDSIVA------------SLGVDSGLPD----- 361
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
GE F D+K+ FK++ + + + G R+D
Sbjct: 362 ---------GE-------------------FLARDLKVEFKKLVKQRMALMVAAGRGRAD 393
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPIS G+LP HGS LFTRGETQ+L +TLG+K M+QR ++L+ D KRF
Sbjct: 394 GRGPSEVRPISIEMGVLPTPHGSVLFTRGETQALVTVTLGNKGMSQRTESLDGSDS-KRF 452
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
YLQYSFPPSSVGEVGR+GAP RREIGHG LAERAL PV+PS+ DFPY +RVES I ES G
Sbjct: 453 YLQYSFPPSSVGEVGRVGAPGRREIGHGNLAERALLPVIPSEEDFPYALRVESMIMESCG 512
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLD--TDEFGGDGTPLILSDITGSEDAS 629
SSSMAS CGG LAL D GVP+K IAGVAMG++LD DE P++L+DI G EDA
Sbjct: 513 SSSMASACGGSLALMDCGVPLKRHIAGVAMGLLLDEAVDE------PIVLTDILGLEDAF 566
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
G MDFK+ G+ +G+T FQ+DIK G+T P ++KAL+QAK+GR HIL M + P P +
Sbjct: 567 GTMDFKICGDAEGVTTFQLDIKCNGLTFPTLEKALRQAKEGRLHILKIMEEACPAPRAEM 626
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKI---------- 739
+ I +K+ P I +IG G+++++II++ + +D D G V +
Sbjct: 627 RGNVMRISQVKINPSFIGKLIGPQGRQIRAIIDQFSLSELDVSDQGVVSVCSFSTESNQA 686
Query: 740 TAKDLSSLEKSKAIISNLTM----VPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHIS 795
AK + + K + SN +P VG ++R+ EIK I +GVFVEI PG +GL H+S
Sbjct: 687 AAKFIEDMYKDEVKASNTVEFKGPMPEVGTVFRDVEIKGIQSFGVFVEILPGLQGLVHVS 746
Query: 796 ELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
EL++ + E + K GD VDVKL+ +N+KGQLRLSR+A+L E A
Sbjct: 747 ELNNKRVVSVEALYKSGDRVDVKLLGINEKGQLRLSRKAILEEEGA 792
>gi|384449816|ref|YP_005662418.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
LPCoLN]
gi|269302800|gb|ACZ32900.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
LPCoLN]
Length = 694
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 352/749 (46%), Positives = 468/749 (62%), Gaps = 59/749 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q +S+ + G + ++ ETG + RQA+GAV V GET ++ S C D+ + DF PL V+
Sbjct: 4 QTISINLTEG-KILVFETGKIARQANGAVLVRSGETCVFASACAVDL-DDKVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG
Sbjct: 62 YQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD LA+ AA A+A+S++P S ++AGVR+G + +++++NPT E+ S LDL+LAG+
Sbjct: 122 QVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE ++ A++ G + I ++ E GK K L + P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEIGKSKNLSAVYPLPTEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+E A ++ ++ IK+K +EE +L +
Sbjct: 242 LTAVKECAQDKFTELFNIKDKKVHAATAHEIEENIL----------------------EK 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L+ ED+D LFS ++K K + S +R I +
Sbjct: 280 LQREDDD--------------------------LFSSFNIKAACKTLKSDTMRALIRDRE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR +RPI+ LPR HGS LFTRGETQ+LAV TLG + MAQR ++L +
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEG- 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES IT
Sbjct: 373 LSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIESNIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPI IAG+AMG++LD D +ILSDI+G ED
Sbjct: 433 ESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILD------DQGAIILSDISGLED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFK+AG+ GITAFQMDIKV GIT +MKKAL QAK G IL M + P
Sbjct: 487 HLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALSAPKA 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEETGV+ ID D G V I+A S++
Sbjct: 547 DLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQ-IDINDLGVVSISASSASAI 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
K+K II L VG YR + S+ +G FVE+ PG+EGLCHISE S + D
Sbjct: 606 NKAKEIIEGLVGEVEVGKTYRG-RVTSVVAFGAFVEVLPGKEGLCHISEFSRQRIENISD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VVK GD++DVKL+ +N+KGQL+LS +A L
Sbjct: 665 VVKEGDIIDVKLLSINEKGQLKLSHKATL 693
>gi|15618907|ref|NP_225193.1| polynucleotide phosphorylase [Chlamydophila pneumoniae CWL029]
gi|15836530|ref|NP_301054.1| polynucleotide phosphorylase [Chlamydophila pneumoniae J138]
gi|16752027|ref|NP_445393.1| polynucleotide phosphorylase/polyadenylase [Chlamydophila
pneumoniae AR39]
gi|81789835|sp|Q9Z6R0.1|PNP_CHLPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4377328|gb|AAD19136.1| Polyribonucleotide Nucleotidyltransferase [Chlamydophila pneumoniae
CWL029]
gi|7189766|gb|AAF38644.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
AR39]
gi|8979372|dbj|BAA99206.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
J138]
Length = 694
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 352/749 (46%), Positives = 468/749 (62%), Gaps = 59/749 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q +S+ + G + ++ ETG + RQA+GAV V GET ++ S C D+ + DF PL V+
Sbjct: 4 QTISINLTEG-KILVFETGKIARQANGAVLVRSGETCVFASACAVDL-DDKVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG
Sbjct: 62 YQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD LA+ AA A+A+S++P S ++AGVR+G + +++++NPT E+ S LDL+LAG+
Sbjct: 122 QVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE ++ A++ G + I ++ E GK K L + P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEVGKSKNLSAVYPLPAEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+E A ++ ++ IK+K +EE +L +
Sbjct: 242 LTAVKECAQDKFTELFNIKDKKVHAATAHEIEENIL----------------------EK 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L+ ED+D LFS ++K K + S +R I +
Sbjct: 280 LQREDDD--------------------------LFSSFNIKAACKTLKSDTMRALIRDRE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR +RPI+ LPR HGS LFTRGETQ+LAV TLG + MAQR ++L +
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEG- 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES IT
Sbjct: 373 LSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIESNIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPI IAG+AMG++LD D +ILSDI+G ED
Sbjct: 433 ESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILD------DQGAIILSDISGLED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFK+AG+ GITAFQMDIKV GIT +MKKAL QAK G IL M + P
Sbjct: 487 HLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALSAPKA 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEETGV+ ID D G V I+A S++
Sbjct: 547 DLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQ-IDVNDLGVVSISASSASAI 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
K+K II L VG YR + S+ +G FVE+ PG+EGLCHISE S + D
Sbjct: 606 NKAKEIIEGLVGEVEVGKTYRG-RVTSVVAFGAFVEVLPGKEGLCHISECSRQRIENISD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VVK GD++DVKL+ +N+KGQL+LS +A L
Sbjct: 665 VVKEGDIIDVKLLSINEKGQLKLSHKATL 693
>gi|33242368|ref|NP_877309.1| polynucleotide phosphorylase [Chlamydophila pneumoniae TW-183]
gi|33236879|gb|AAP98966.1| polyribonucleotide nucleotidyltransferase [Chlamydophila pneumoniae
TW-183]
Length = 694
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 352/749 (46%), Positives = 468/749 (62%), Gaps = 59/749 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q +S+ + G + ++ ETG + RQA+GAV V GET ++ S C D+ + DF PL V+
Sbjct: 4 QTISINLTEG-KILVFETGKIARQANGAVLVRSGETCVFASACAVDL-DDKVDFLPLRVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+FS+ G+T GGF KREGR + E+LV RLIDR LRP+ + Q+LS+V SYDG
Sbjct: 62 YQEKFSSTGKTLGGFIKREGRPSEKEILVSRLIDRSLRPSFPYRLMQDVQVLSYVWSYDG 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD LA+ AA A+A+S++P S ++AGVR+G + +++++NPT E+ S LDL+LAG+
Sbjct: 122 QVLPDPLAICAASAALAISDIPQSNIVAGVRIGCIDNQWVINPTKTELASSTLDLVLAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++AILMIEG+CDF +EE ++ A++ G + I ++ E GK K L + P E+
Sbjct: 182 ENAILMIEGHCDFFTEEQVLDAIEFGHKHIVTICKRLQLWQEEIGKSKNLSAVYPLPAEV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+E A ++ ++ IK+K +EE +L +
Sbjct: 242 LTAVKECAQDKFTELFNIKDKKVHAATAHEIEENIL----------------------EK 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L+ ED+D LFS ++K K + S +R I +
Sbjct: 280 LQREDDD--------------------------LFSSFNIKAACKTLKSDTMRALIRDRE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR +RPI+ LPR HGS LFTRGETQ+LAV TLG + MAQR ++L +
Sbjct: 314 IRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYEDLNGEG- 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ +FYLQY FPP SVGEVGRIG+P RREIGHG LAE+AL LP FPYTIR+ES IT
Sbjct: 373 LSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFPYTIRIESNIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVPI IAG+AMG++LD D +ILSDI+G ED
Sbjct: 433 ESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILD------DQGAIILSDISGLED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFK+AG+ GITAFQMDIKV GIT +MKKAL QAK G IL M + P
Sbjct: 487 HLGDMDFKIAGSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALSAPKA 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I M++KP KI +IG GGK+++ IIEETGV+ ID D G V I+A S++
Sbjct: 547 DLSQYAPRIETMQIKPTKIASVIGPGGKQIRQIIEETGVQ-IDVNDLGVVSISASSASAI 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
K+K II L VG YR + S+ +G FVE+ PG+EGLCHISE S + D
Sbjct: 606 NKAKEIIEGLVGEVEVGKTYRG-RVTSVVAFGAFVEVLPGKEGLCHISECSRQRIENISD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VVK GD++DVKL+ +N+KGQL+LS +A L
Sbjct: 665 VVKEGDIIDVKLLSINEKGQLKLSHKATL 693
>gi|384246679|gb|EIE20168.1| hypothetical protein COCSUDRAFT_48633 [Coccomyxa subellipsoidea
C-169]
Length = 1063
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 353/737 (47%), Positives = 483/737 (65%), Gaps = 35/737 (4%)
Query: 118 VTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVC 177
+T G+T++Y + C D F PL VNY ERFSAAGRTSGG+ KR+GR KD EVL
Sbjct: 2 LTCGKTVLYATACCGDHTVGDGSFTPLQVNYAERFSAAGRTSGGWLKRDGRPKDGEVLTA 61
Query: 178 RLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGV 237
RL+DRPLRP G+ ++TQ+L WVLSYDG++ P+ LA+TAA A+A+S++P K +AGV
Sbjct: 62 RLVDRPLRPMFAPGWANDTQVLIWVLSYDGINTPEPLAITAAAAALAISDIPLQKAVAGV 121
Query: 238 RVGLV-GDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDA 296
RVGL+ G F+VNP+ QE+++S LDL+LAG+ DA+LMIEGYCDFLSE+ +++AV+VG +A
Sbjct: 122 RVGLLEGRGFVVNPSEQELQESSLDLMLAGTADALLMIEGYCDFLSEDQMLEAVRVGTEA 181
Query: 297 VREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKN-KIPRRKAL 355
V E ++ + G+PK D + L +E + +++ + K R A+
Sbjct: 182 VAEQCRAIEGWRKQVGRPKRQD-MAHGTEGLEARIEALCRDDVEAAYRRSGGKHERSSAV 240
Query: 356 SSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSR 415
+++E+V + L+E + +++ L EDE + EE+ V G P +
Sbjct: 241 MAIQERVKSQLAEADSL---------QSLGSLSEDESDVEEMSV------GTSGAAPVAN 285
Query: 416 KSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSA 475
S F FK V ++ +RR + R+DGR D +RPI+SR GLLP HGS+
Sbjct: 286 LSQ---FGRA-----FKHVEARVMRRMALGEDCRADGRRCDEVRPITSRAGLLPSTHGSS 337
Query: 476 LFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR-FYLQYSFPPSSVGEVGRIGAPSRR 534
LFTRGETQ++AV+TLG +Q AQ++D + + + R F+LQY FPPS VGE GR+GAP RR
Sbjct: 338 LFTRGETQTIAVVTLGSEQDAQQVDEMALEGQFSRKFFLQYYFPPSCVGETGRVGAPGRR 397
Query: 535 EIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKC 594
EIGHG LAERAL P++P DFPYT+RVEST+TESNGSSSMASVCGG LAL DAGVP+
Sbjct: 398 EIGHGQLAERALTPIIPDAVDFPYTVRVESTVTESNGSSSMASVCGGYLALLDAGVPVTR 457
Query: 595 SIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGG 654
+AGVAMG++L+ G IL+DI GSEDA GDMDFKVAG+ D ITAFQMDIKV G
Sbjct: 458 PVAGVAMGLILEP-----SGQFQILTDILGSEDAMGDMDFKVAGDADHITAFQMDIKVEG 512
Query: 655 ITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGG 714
IT+ V+ AL A+ RRHIL EM +C+P P SL+ +AP I V P+K+ +IG GG
Sbjct: 513 ITIEVLTAALAAARAARRHILGEMDRCAPAPRRSLAPNAPRIRRFNVNPDKLGQLIGPGG 572
Query: 715 KKVKSIIEETGVEAIDTEDD--GTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEI 772
+ ++++IEE+G + I D+ GTV++ A K+ + L P VG Y ++
Sbjct: 573 RYIRALIEESGADDIKVVDNIKGTVEVMASSDDIATKALQMAERLLEEPEVGRTYNGAKV 632
Query: 773 KSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSR 832
S+ +G+FVEI PG+ GL H SEL + AE+ V VGD +DVKL+EV + G+L+LSR
Sbjct: 633 DSVEKFGLFVEILPGKTGLLHNSELDVDRSITAENWV-VGDSIDVKLLEVLENGKLKLSR 691
Query: 833 RALLPEADAENPPVKLP 849
+AL E AE+ P++ P
Sbjct: 692 KALQIEGGAEDIPMEQP 708
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 30/221 (13%)
Query: 629 SGDMDFKVAGNEDG---ITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
SG D KV N G + A DI L + ++ L++ + GR + A++
Sbjct: 582 SGADDIKVVDNIKGTVEVMASSDDIATK--ALQMAERLLEEPEVGRTYNGAKV------- 632
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGV--EAIDTE-----DDGTVK 738
+S+ K + I+ P K L+ S +SI E V ++ID + ++G +K
Sbjct: 633 -DSVEKFGLFVEIL---PGKTGLLHNSELDVDRSITAENWVVGDSIDVKLLEVLENGKLK 688
Query: 739 ITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELS 798
++ K L ++ I P G IYRNC++ S A +GVFVEI PG +GL H+SEL
Sbjct: 689 LSRKALQIEGGAEDIPMEQ---PEPGKIYRNCQVTSCAAFGVFVEILPGLQGLVHVSELE 745
Query: 799 SNWLAKAE-DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ +AE D GD +DVKL+EV +L+LSR+++L E
Sbjct: 746 ---IGRAEADEWSPGDTMDVKLLEVMAGNKLKLSRKSVLLE 783
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 761 PTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLI 820
P +G IYR+ ++ ++ +G+FVEI PG GLCHISEL A D + GD +DVKLI
Sbjct: 898 PEIGKIYRDACVEGVSAFGLFVEILPGVRGLCHISELELGRTASM-DAWEEGDRIDVKLI 956
Query: 821 EVNDKGQLRLSRRALLPE 838
+ G+L+LSR+ +L E
Sbjct: 957 DTLKDGKLKLSRKEVLLE 974
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 726 VEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA 785
V+ IDT DG +K++ K++ LE A SN P VG+I R ++S+ +GVFV++A
Sbjct: 953 VKLIDTLKDGKLKLSRKEVL-LEDGSAQRSN---EPAVGEIVRGAVVRSVVDFGVFVKVA 1008
Query: 786 PGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEA 839
PG +GL H S+L + + D + GD +DVK+++ D +L LS+ A L A
Sbjct: 1009 PGVKGLVHRSQLDLDDFEEVSDRYQSGDRIDVKVLQPFDD-RLTLSQVAALEAA 1061
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 763 VGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEV 822
+G IY++ + + G+ VE APG EG H ++L GD++D K++EV
Sbjct: 803 LGRIYKDARVTKVMATGLVVEAAPGVEGTVHQTDLDVTQYPDLR-CWHAGDVMDAKVVEV 861
Query: 823 NDKGQLRLSRRALL 836
++ G+LRLSR+A+L
Sbjct: 862 SEDGKLRLSRKAVL 875
>gi|299115591|emb|CBN75793.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 834
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 367/838 (43%), Positives = 494/838 (58%), Gaps = 100/838 (11%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
+++ G R + ETG +GRQASGAV DGET++Y++ C D + S+F PL V+Y ER
Sbjct: 26 LRVTVGGRDLSFETGKVGRQASGAVMARDGETVVYSTAC-TDRKTTTSNFSPLRVDYMER 84
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
FSAAG TSGG+ KR+GR D E LV RL+DRPLRP + G++HETQ+LSWVLSYD +H P
Sbjct: 85 FSAAGMTSGGYNKRDGRASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTVHPP 144
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGD-KFIVNPTTQEMEDSQLDLLLAGSDDA 270
LA+TAA A+ALS VP + IAGV VG+ + + +VNP S L+L +AG+ D
Sbjct: 145 VPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEISVAAMSPLNLTIAGTADG 204
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LMIEG DF+ EE +++A++VG AVR++ ++ E+ GK K DT++LPP L +
Sbjct: 205 VLMIEGESDFVCEEDMMRAIEVGHAAVRDLCLGIEEWSEVAGKEKKTDTLRLPPEGLDEI 264
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+E ++KV L E+G D++ + E L
Sbjct: 265 MER-----------------------DFQDKVDHALFESGEGKDDQSSAMRE-----LTG 296
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ V +GE +P + + +S DV+ K++ SK LR + E GRR
Sbjct: 297 LTREALQVAEGE--------EPGNGR-----YSTYDVETALKKLYSKRLRTIVKETGRRC 343
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D +RPIS GLLPR HGS LFTRG+TQ++A +TLG +Q+ D + + +K
Sbjct: 344 DGRRTDEVRPISIETGLLPRTHGSCLFTRGDTQAIATVTLGGSGSSQKTDGI-TGMILKH 402
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
FYLQY+FPPS VGE GRIG P RRE+GHG LAE+AL +P NDFPYT+RVES ITES
Sbjct: 403 FYLQYTFPPSCVGETGRIGGPGRREVGHGALAEKALSYTVPPVNDFPYTVRVESLITESC 462
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGT-PLILSDITGSEDAS 629
GSSSMASVCGG LA+ DAG+P+ IAGVAMG++LD E GG G ++L+DI G EDA
Sbjct: 463 GSSSMASVCGGSLAMMDAGIPVSSPIAGVAMGLLLD--EEGGSGEEAVVLTDILGLEDAL 520
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP-PSNS 688
G MDFKVAGN+ GIT FQ+DIK G+T ++ +AL QAK GR HIL EM K P P
Sbjct: 521 GTMDFKVAGNDKGITTFQLDIKCAGLTTALLGRALTQAKAGRLHILGEMQKAQPDGPRKE 580
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S P IM V P++I IIG GGK ++ IIE+ ++ +D E+DG V I+A + +S
Sbjct: 581 ISPFVPTATIMSVDPDQIGKIIGPGGKIIRQIIEDFSLDGMDVEEDGRVMISAFNSTSAA 640
Query: 749 KSKAII-----------------------------SNLTMVPTVGDIYRNCEIKSIAPYG 779
+ I ++ +G YR+CE+ SI P+G
Sbjct: 641 SAVKYIEEMLKDVTLRGGGRGGGGGGGGRSSRGVPADFNATAIIGTTYRDCEVVSIQPFG 700
Query: 780 VFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE- 838
FVE APG EGL H+SEL N + AE + +DVK+I +NDKG++RLSR+A+L +
Sbjct: 701 AFVEFAPGLEGLVHVSELDVNRVVTAEGFLADKPAIDVKVIGLNDKGKVRLSRKAVLMDE 760
Query: 839 -------ADAENPPVKLPTGDPTKDAAASDKLVG----------SPKPKGSSSEDTVL 879
A +PP K P G A AS +G +PK G++ E L
Sbjct: 761 RGGKAGGAAVPSPPRKRPNG-----ALASGGALGVVKRAAPAAATPKTVGAAKEGVAL 813
>gi|145344077|ref|XP_001416565.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576791|gb|ABO94858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 823
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 341/757 (45%), Positives = 479/757 (63%), Gaps = 67/757 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G+ ++ +ETG +G QA+GAV ++GET++Y + C + + F PL VNY ERFSAA
Sbjct: 75 IGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVNYAERFSAA 134
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GRTSGG+ KR+G +++E L RL+DRP+RP + KG+ +ETQ+L W++S+D DALA
Sbjct: 135 GRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERSTDALA 194
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLV--GDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
+TAA A+A+S++P K + GVRVGL+ D+ +VNPT+++M+ S+LDL+LAG+D+A+LM
Sbjct: 195 ITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLAGTDEAVLM 254
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
IEG+CDFL+ + +++A++ GQ+AV + E+ A KM+ + + PE
Sbjct: 255 IEGFCDFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKL-IVQPE------- 306
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G+ E + L+EDE +
Sbjct: 307 ---------------------------------------------GVDEAVAALVEDELK 321
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFK---EVTSKFLRRRIVEGGRRS 450
+ +VV + + G I ++ L E V ++ S+ LR I GRR
Sbjct: 322 -QAIVVPIKQERG-AMIGAARERAVEALQDEFQASAVINACGKIESRALRDVIRTKGRRQ 379
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI+ G+LPR HGS+LFTRGETQ++ V TLG Q AQR D++E+ ++ KR
Sbjct: 380 DGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQDDVEAGED-KR 438
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y FPPSSVGE GR G SRREIGHG LAERAL P+LPS+ DFP+ ++ESTITESN
Sbjct: 439 FMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCKLESTITESN 498
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGG--DGTPLILSDITGSEDA 628
GSSSMA+VC G LAL DAGVPIK +AG+AMG++L ++ GG + P++L+DI GSEDA
Sbjct: 499 GSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGDELEPIVLTDILGSEDA 558
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG++DGITAFQMDIKV GIT+ VMK AL++A+ G HIL EM KC P P+ +
Sbjct: 559 LGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLVHILGEMEKCDPAPAGA 618
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAID-TEDDGTVKITAKDLSSL 747
SK+AP I + V + +IG GG+ ++SI+E+TG E ID ++ V +T + L
Sbjct: 619 TSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAENIDVNKEKEMVFVTGGADADL 678
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + +I + + P VG IYR C +K + +G FVE PG EGL HISEL + + D
Sbjct: 679 DAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEGLVHISELDVSRVPNVSD 738
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
V G ++DVK+I V+++G+ LSR+ +L E ENP
Sbjct: 739 VTSEGAVMDVKIIAVDNRGKTSLSRKEVLLE---ENP 772
>gi|338732644|ref|YP_004671117.1| polyribonucleotide nucleotidyltransferase [Simkania negevensis Z]
gi|336482027|emb|CCB88626.1| polyribonucleotide nucleotidyltransferase [Simkania negevensis Z]
Length = 685
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 322/685 (47%), Positives = 444/685 (64%), Gaps = 57/685 (8%)
Query: 160 GGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAA 219
GGF KREG+ + E LVCRLIDRP+RP +G+Y ETQ+++ VLSYDG++ P+ LA+ A
Sbjct: 13 GGFIKREGKPTERETLVCRLIDRPIRPMFEEGYYTETQLITSVLSYDGVNAPEPLAICAN 72
Query: 220 GIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCD 279
A+ LS++P K IAGVRVG++ D+F++NPT QE EDS LDL+LAG++DAILMIEGYCD
Sbjct: 73 SAALVLSDIPLIKPIAGVRVGMIEDRFVINPTVQEQEDSVLDLMLAGTEDAILMIEGYCD 132
Query: 280 FLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEEL 339
FL+E+ +++A++ G A++ I ++ GK K D ++L P L + V+ I L
Sbjct: 133 FLTEDQVMEAIEEGHQAIKLICQKLSDWQATHGKTKKRDELRLLPTGLLEEVDSIMNAPL 192
Query: 340 VKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVV 399
++I K R +LS+++E V+ L +P+ ED+ +
Sbjct: 193 QDAIRISEKQVREDSLSAIKETVVEKL-----------------LPEGAEDKHK------ 229
Query: 400 DGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIR 459
++ +V++ K+VTS +RR I++ +R DGR + +R
Sbjct: 230 ----------------------YAPHEVQMAIKKVTSDHMRRMILKENKRCDGRGPEDVR 267
Query: 460 PISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPP 519
I LPR HGSA+FTRGETQ++AV TLG + M QR ++L +D ++RFYLQY+FPP
Sbjct: 268 QIWIDMDYLPRTHGSAVFTRGETQTIAVCTLGGESMGQRYEDLNTDG-IRRFYLQYNFPP 326
Query: 520 SSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVC 579
SVGE GRIG P RRE+GHG LAERAL+ +P + FPYTIR+ES ITESNGSSSMASVC
Sbjct: 327 FSVGESGRIGPPGRREVGHGKLAERALQCTIPEKDSFPYTIRLESNITESNGSSSMASVC 386
Query: 580 GGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGN 639
GGCLAL AGVPIK IAG+AMG++L+ D + ILSDI G EDA GDMDFK+ G+
Sbjct: 387 GGCLALMQAGVPIKRPIAGIAMGLILEKDSYA------ILSDILGVEDALGDMDFKITGD 440
Query: 640 EDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIM 699
E GITAFQ+DIKV GI +MK AL QAK GR HIL +ML+ P + LS+HAP I +
Sbjct: 441 EKGITAFQLDIKVEGINPQIMKVALAQAKQGRIHILHKMLEACPKSNEHLSQHAPRIETV 500
Query: 700 KVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTM 759
+VKP +I IIG GGK+++ I+E +G + ID +D G V I + ++++K II NLT
Sbjct: 501 QVKPSQIGTIIGPGGKQIREIVELSGAD-IDIDDSGLVSIASSTKEGMDRAKEIIYNLTA 559
Query: 760 VPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKL 819
+G Y+ +I +I +G+FV I ++GLCHISELS + D K GD ++VK+
Sbjct: 560 EVEIGQTYKG-KIVTIKEFGLFVAIL-SKQGLCHISELSYQRIENIHDHYKEGDSIEVKV 617
Query: 820 IEVNDKGQLRLSRRALL--PEADAE 842
+E+N+ GQ+RLS +A+L PE E
Sbjct: 618 LEINNNGQIRLSHKAILEAPEGYVE 642
>gi|374328865|ref|YP_005079049.1| polynucleotide phosphorylase/polyadenylase [Pseudovibrio sp.
FO-BEG1]
gi|359341652|gb|AEV35026.1| polynucleotide phosphorylase/polyadenylase [Pseudovibrio sp.
FO-BEG1]
Length = 716
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 329/755 (43%), Positives = 461/755 (61%), Gaps = 62/755 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G R +++ETG + RQA GAV T GET + +V A DFFPL VNYQE+
Sbjct: 7 VEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAGR GGFFKREGR +HE L RLIDRP+RP + G+ +ETQ++ VLS+D + P
Sbjct: 67 AYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSHDLENAP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ A A+ +S VP I G RVG + ++++NPT +ME++ LDL++AG++DA+
Sbjct: 127 DVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVAGTNDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP-PELYK 329
LM+E LSEE+++ AV G + + + + L E K P+ L+ LP +L+
Sbjct: 187 LMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELN---LPDHSDLFG 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V+E+A EEL I K R+ A+ +++ KV+ L V+ +E I DL
Sbjct: 244 KVQELANEELGAAYSITAKTERKNAVDAVKAKVVEAL-----VTGEEGAPEANVISDL-- 296
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
FK+ + +R RI++ G R
Sbjct: 297 -----------------------------------------FKKAEAAIVRGRILDTGSR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I S G+LPRAHGS+LFTRGETQ++ V TLG + Q ID LE +
Sbjct: 316 IDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKAT 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ +DFPYT+RV S ITES
Sbjct: 376 -FMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHDFPYTVRVVSEITES 434
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG L+L DAGVP+K +AG+AMG++ + + F +LSDI G ED
Sbjct: 435 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFA------VLSDILGDEDHL 488
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG+E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K + L
Sbjct: 489 GDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAITEARSEL 548
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I ++K+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 549 GEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGKAIKA 607
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I+++ P VG IY +K++ +G FV R+GL HIS+L+ +AK DV+
Sbjct: 608 ALNWINSIAAEPEVGVIYEGTVVKTV-DFGAFVNFFGARDGLVHISQLAPRKVAKVTDVI 666
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
K GD V VKL+ +++G++RLS + + E E P
Sbjct: 667 KEGDKVFVKLMGFDERGKVRLSMKVVDQETGQEIP 701
>gi|254471003|ref|ZP_05084406.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
JE062]
gi|211960145|gb|EEA95342.1| polyribonucleotide nucleotidyltransferase protein [Pseudovibrio sp.
JE062]
Length = 712
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 329/755 (43%), Positives = 461/755 (61%), Gaps = 62/755 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G R +++ETG + RQA GAV T GET + +V A DFFPL VNYQE+
Sbjct: 7 VEVDWGGRPLILETGKVARQADGAVIATYGETKVLATVVSAKDAKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAGR GGFFKREGR +HE L RLIDRP+RP + G+ +ETQ++ VLS+D + P
Sbjct: 67 AYAAGRIPGGFFKREGRPSEHETLTSRLIDRPIRPLFVDGYKNETQVVLTVLSHDLENAP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ A A+ +S VP I G RVG + ++++NPT +ME++ LDL++AG++DA+
Sbjct: 127 DVVAMVGASAALTISGVPFMGPIGGARVGYINGEYVLNPTVDQMEETNLDLVVAGTNDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP-PELYK 329
LM+E LSEE+++ AV G + + + + L E K P+ L+ LP +L+
Sbjct: 187 LMVESEAQELSEEVMLGAVMFGHKGFQPVIDAIIQLAEKAAKEPRELN---LPDHSDLFG 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V+E+A EEL I K R+ A+ +++ KV+ L V+ +E I DL
Sbjct: 244 KVQELANEELGAAYSITAKTERKNAVDAVKAKVVEAL-----VTGEEGAPEANVISDL-- 296
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
FK+ + +R RI++ G R
Sbjct: 297 -----------------------------------------FKKAEAAIVRGRILDTGSR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I S G+LPRAHGS+LFTRGETQ++ V TLG + Q ID LE +
Sbjct: 316 IDGRDLSTVRSIVSEVGMLPRAHGSSLFTRGETQAMVVATLGTGEDEQFIDLLEGTKKAT 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ +DFPYT+RV S ITES
Sbjct: 376 -FMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVNPMLPAHHDFPYTVRVVSEITES 434
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG L+L DAGVP+K +AG+AMG++ + + F +LSDI G ED
Sbjct: 435 NGSSSMASVCGASLSLMDAGVPLKAPVAGIAMGLIKEGERFA------VLSDILGDEDHL 488
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG+E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K + L
Sbjct: 489 GDMDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAITEARSEL 548
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I ++K+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 549 GEHAPRIEVIKIPVDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGKAIKA 607
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I+++ P VG IY +K++ +G FV R+GL HIS+L+ +AK DV+
Sbjct: 608 ALNWINSIAAEPEVGVIYEGTVVKTV-DFGAFVNFFGARDGLVHISQLAPRKVAKVTDVI 666
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
K GD V VKL+ +++G++RLS + + E E P
Sbjct: 667 KEGDKVFVKLMGFDERGKVRLSMKVVDQETGQEIP 701
>gi|158421687|ref|YP_001522979.1| polynucleotide phosphorylase/polyadenylase [Azorhizobium
caulinodans ORS 571]
gi|158328576|dbj|BAF86061.1| polyribonucleotide nucleotidyltransferase [Azorhizobium caulinodans
ORS 571]
Length = 756
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 330/744 (44%), Positives = 457/744 (61%), Gaps = 57/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ +G R +++ETG M RQA GAV + G+T + +V A P DFFPL VNYQE+
Sbjct: 40 ELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKT 99
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP G+ ++TQ++ VL++D + PD
Sbjct: 100 YAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 159
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
L++ AA A+ LS VP I G RVG VGD++++NPT +E++DS LDL++AG+ DA+L
Sbjct: 160 VLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVAGTSDAVL 219
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSEE+++ AV G + + + L E K P+ + + L +
Sbjct: 220 MVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA--LEAKI 277
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
EIA +L +IK K R +A+ + + KV
Sbjct: 278 REIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYF------------------------- 312
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E++ +DG+ PK++ DV V K + +K +R I++ G R D
Sbjct: 313 ---EQLAIDGQE-------APKAQ----------DVAEVLKGLEAKIVRWAILDDGIRID 352
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S G+LPRAHGSALFTRGETQ+L V TLG + Q ID+LE + + F
Sbjct: 353 GRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK-EHF 411
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYT+RV S I ESNG
Sbjct: 412 LLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVSEILESNG 471
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG L+L DAGVP+K +AG+AMG++L+ ++F +LSDI G ED GD
Sbjct: 472 SSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFA------VLSDILGDEDHLGD 525
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ GIT +MK AL QAKDGR HIL EM K L +
Sbjct: 526 MDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSKALTSARAELGE 585
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +MK+ +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + S++ +
Sbjct: 586 HAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASASGDSIKAAI 644
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY +K + +G FV ++GL HIS+LS +AK+ DVVK
Sbjct: 645 NWIKSIASEPEVGAIYDGTVVK-VVDFGAFVNFFGSKDGLVHISQLSKERVAKSSDVVKE 703
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G+ RLS +A+
Sbjct: 704 GDKVKVKLVGFDERGKTRLSMKAV 727
>gi|187471094|sp|A8IGA3.2|PNP_AZOC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 724
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 330/744 (44%), Positives = 457/744 (61%), Gaps = 57/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ +G R +++ETG M RQA GAV + G+T + +V A P DFFPL VNYQE+
Sbjct: 8 ELDWGGRTLVLETGKMARQADGAVFASYGDTTVLATVVSAREPKPGQDFFPLTVNYQEKT 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP G+ ++TQ++ VL++D + PD
Sbjct: 68 YAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQVVVTVLAHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
L++ AA A+ LS VP I G RVG VGD++++NPT +E++DS LDL++AG+ DA+L
Sbjct: 128 VLSMVAASAALTLSGVPFMGPIGGARVGFVGDEYVLNPTIEELKDSALDLVVAGTSDAVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSEE+++ AV G + + + L E K P+ + + L +
Sbjct: 188 MVESEAKELSEEVMLGAVMFGHRHFQPVIEAIIRLAEKAAKEPRPFEPVDHSA--LEAKI 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
EIA +L +IK K R +A+ + + KV
Sbjct: 246 REIAEADLRAAYKIKQKQARYEAVGAAKSKVKKYF------------------------- 280
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E++ +DG+ PK++ DV V K + +K +R I++ G R D
Sbjct: 281 ---EQLAIDGQE-------APKAQ----------DVAEVLKGLEAKIVRWAILDDGIRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S G+LPRAHGSALFTRGETQ+L V TLG + Q ID+LE + + F
Sbjct: 321 GRDVKTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK-EHF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYT+RV S I ESNG
Sbjct: 380 LLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVSEILESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG L+L DAGVP+K +AG+AMG++L+ ++F +LSDI G ED GD
Sbjct: 440 SSSMATVCGTSLSLMDAGVPLKSPVAGIAMGLILEGEKFA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ GIT +MK AL QAKDGR HIL EM K L +
Sbjct: 494 MDFKVAGTESGVTALQMDIKIAGITEEIMKVALAQAKDGRAHILGEMSKALTSARAELGE 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +MK+ +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + S++ +
Sbjct: 554 HAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASASGDSIKAAI 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY +K + +G FV ++GL HIS+LS +AK+ DVVK
Sbjct: 613 NWIKSIASEPEVGAIYDGTVVK-VVDFGAFVNFFGSKDGLVHISQLSKERVAKSSDVVKE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G+ RLS +A+
Sbjct: 672 GDKVKVKLVGFDERGKTRLSMKAV 695
>gi|414176948|ref|ZP_11431177.1| polyribonucleotide nucleotidyltransferase [Afipia broomeae ATCC
49717]
gi|410887101|gb|EKS34913.1| polyribonucleotide nucleotidyltransferase [Afipia broomeae ATCC
49717]
Length = 714
Score = 590 bits (1521), Expect = e-165, Method: Compositional matrix adjust.
Identities = 326/749 (43%), Positives = 456/749 (60%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GETI+ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ A+ A+ LS P I RVG + D++++NPT EM D+ LDL++AG+ DA
Sbjct: 126 PDILALVASSAALTLSGAPFQGPIGAARVGFINDEYVLNPTLDEMADTNLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK----PKMLDTIKLPPPE 326
+LM+E L+EE+++ AV G R +KA++E+ K P+ + ++
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGH---RHFQPVIKAIIELAEKAAKEPREVSSVD--NSA 240
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ K + + EL K I K R A+ +++KV+
Sbjct: 241 IDKEMRTVGEAELRKAYAIPVKQDRYAAVGEVKKKVMD---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ + ++ V VFKE+ + +R I++
Sbjct: 279 ----------------------HFFPEGQEPK---YDKLRVAGVFKELEADVVRNNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+R DGR +RPI + G+LPRAHGSALFTRGETQ++ V TLG + Q ID+L S
Sbjct: 314 GKRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSL-SGT 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+RF L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP+ ++FPYT+RV S I
Sbjct: 373 YKERFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVP+K AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E+GIT+ QMDIK+ GIT +MK+AL QAKDGR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTENGITSLQMDIKIAGITEAIMKQALAQAKDGRIHILGEMAKALTNAR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L +HAP I ++++ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + + S
Sbjct: 547 AELGEHAPRIEVLQIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASANGES 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ + I ++ P VG IY +K + +G FV ++GL HIS+L++N + K
Sbjct: 606 IRAAIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGPKDGLVHISQLAANRVQKTS 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ ++D+G++RLS + +
Sbjct: 665 DVVKEGDKVKVKLLGLDDRGKVRLSMKVV 693
>gi|299133369|ref|ZP_07026564.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
gi|298593506|gb|EFI53706.1| polyribonucleotide nucleotidyltransferase [Afipia sp. 1NLS2]
Length = 714
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 336/767 (43%), Positives = 461/767 (60%), Gaps = 73/767 (9%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV++ +G R + +ETG + RQA GAV T GET++ +V A P E DF PL VNYQE
Sbjct: 6 SVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP IKG+ +TQ++ LS+D +
Sbjct: 66 KTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA A+ LS VP I RV V ++FI+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPIGAARVAFVNNEFILNPTLDEMADTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK----PKMLDTIKLPPPE 326
+LM+E L EE+++ AV G R +KA++++ K P+ ++TI E
Sbjct: 186 VLMVESEAKELPEEVMLGAVMFGH---RHFQPVIKAIIDLAEKAAKEPREIETID--NSE 240
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ K + + EL K I K R A+ ++++KV+
Sbjct: 241 IEKDMRAVGEAELRKAYAIPVKQDRYAAVGAVKKKVMD---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ F ++ + VFKE+ + +R I++
Sbjct: 279 ----------------------HFFPEGQEPK---FDKLRIAGVFKELEADVVRNNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S
Sbjct: 314 GLRIDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGT 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP SVGE GRIG+P RREIGHG LA RA+ PVLP+ ++FPYT+RV S I
Sbjct: 373 YKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG + G+T+ QMDIK+ GIT +MK AL QAKDGR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKDGRIHILGEMAKALTAAR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L +HAP I ++++ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+ + + S
Sbjct: 547 AELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAK-INIEDDGTVKVASANGES 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ + I ++T P VG IY +K + +G FV ++GL HIS+L++N + K
Sbjct: 606 IRAAIKWIKSITSEPEVGQIYDGTVVK-VMEFGAFVNFFGPKDGLVHISQLAANRVQKTS 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEA--------DAENPP 845
DVVK GD V VKL+ ++D+G++RLS +A+ E AEN P
Sbjct: 665 DVVKEGDKVKVKLLGLDDRGKVRLSMKAVNQETGEDLEAKQKAENAP 711
>gi|338972684|ref|ZP_08628055.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobiaceae
bacterium SG-6C]
gi|414169625|ref|ZP_11425358.1| polyribonucleotide nucleotidyltransferase [Afipia clevelandensis
ATCC 49720]
gi|338233845|gb|EGP08964.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobiaceae
bacterium SG-6C]
gi|410885357|gb|EKS33172.1| polyribonucleotide nucleotidyltransferase [Afipia clevelandensis
ATCC 49720]
Length = 714
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 330/749 (44%), Positives = 458/749 (61%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GETI+ +V A P + DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVMATYGETIVLATVVAAKSPRDGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ A+ A+ +S VP I RVG V D+F++NPT EM D+ LDL++AG+ A
Sbjct: 126 PDILALVASSAALTISGVPFMGPIGAARVGFVNDEFVLNPTLDEMNDTNLDLVVAGTATA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK----PKMLDTIKLPPPE 326
+LM+E L E++++ AV G + + +KA++E+ K P+ L +
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKHFQPV---IKAIIELAEKAAKEPREL--VATVNEA 240
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L K + I ++L K I K R A+ ++++K+L ++G + E + +++
Sbjct: 241 LEKEILGIVEQDLRKAYSIPVKQERYAAVGAVKQKLLEHFFKDGVEERYEKLRVLD---- 296
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
VFKEV +K +R I++
Sbjct: 297 -------------------------------------------VFKEVEAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+R DGR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q ID+L S
Sbjct: 314 GKRIDGRDLSTVRPIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSL-SGT 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+RF L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP+ ++FPYT+RV S I
Sbjct: 373 YKERFLLHYNFPPFSVGETGRLGGTKRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVP+K AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT+ QMDIK+ GIT +MK+AL QAKDGR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTETGITSLQMDIKIAGITEAIMKQALAQAKDGRIHILGEMAKALTNAR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L +HAP I ++++ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + + S
Sbjct: 547 AELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASANGES 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ + I ++T P VG IY +K + +G FV ++GL HIS+L++N + K
Sbjct: 606 IRAAIKWIKSITSDPEVGQIYDGTVVK-VMEFGAFVNFFGPKDGLVHISQLAANRVQKTS 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ ++D+G++RLS +A+
Sbjct: 665 DVVKEGDKVKVKLLGLDDRGKVRLSMKAV 693
>gi|219119866|ref|XP_002180684.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408157|gb|EEC48092.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 830
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 352/811 (43%), Positives = 482/811 (59%), Gaps = 75/811 (9%)
Query: 63 FSVRASATGPEV--SEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD 120
FS+ + +GP V+ +LP Q V I +ETG +GRQA+GAVT+T
Sbjct: 58 FSIESDHSGPAGFPVHRVIFHSLPGQEQDVP--------PICIETGKIGRQAAGAVTLTR 109
Query: 121 GETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLI 180
G++++Y + P E DF PL+V+YQERFS+AG TSGG+ KR+GR +HE+L CRLI
Sbjct: 110 GDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTSGGYNKRDGRPAEHEILTCRLI 169
Query: 181 DRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVG 240
DRPLRP + G+ HETQ+LSWVLSYDG D LA+ A+ ++ +S+VP K +A V+VG
Sbjct: 170 DRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIASASSLFISDVPLHKPVAAVQVG 229
Query: 241 LVGD-KFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVRE 299
+ D +VNPT +ME S+L+L++AG+++A+LMIEG DFL E +IQAV+ G +A++
Sbjct: 230 MKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAADFLPESTMIQAVKTGHEAIQV 289
Query: 300 ISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIK-NKIPRRKALSSL 358
+ + AL ++ GK K LDTIK P L V+E+ + + + K + K ++ L
Sbjct: 290 LCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDRIDDMWSSGLGKEAQGKIMTDL 349
Query: 359 EEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKST 418
V+ L E+ ETV I DLL
Sbjct: 350 YTAVVGELIED---YPGETVAIKGAFKDLL------------------------------ 376
Query: 419 PMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFT 478
F R R E G R DGR IR ++ GLLPR HGSALFT
Sbjct: 377 ---------------CRRMFFRAR--EEGLRCDGRGPTDIRQLTMETGLLPRVHGSALFT 419
Query: 479 RGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGH 538
RGETQ +A TLG M Q+I+ L+ DE KRFYLQY+FPPS VGE GR+GAP RRE+GH
Sbjct: 420 RGETQCVATTTLGGSGMRQKIEKLDGTDE-KRFYLQYTFPPSCVGETGRVGAPGRREVGH 478
Query: 539 GTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAG 598
G LAERAL P +P+ DFPYTIRVES ITES+GSSSMASVCGG LAL DAGVPIK +AG
Sbjct: 479 GNLAERALIPTIPALADFPYTIRVESLITESHGSSSMASVCGGSLALMDAGVPIKAPVAG 538
Query: 599 VAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLP 658
+AMGM+L D +ILSDI G+EDA G MDFKVAG+ GI+ FQ+DIK G+TL
Sbjct: 539 IAMGMLLGDKGGVSDENAVILSDILGTEDALGTMDFKVAGDRVGISTFQLDIKCEGLTLE 598
Query: 659 VMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVK 718
M+ AL+QA+ GR H+L+EM K P L P + + E I IIG GGK+++
Sbjct: 599 TMESALEQARTGRLHLLSEMEKVIASPREELPATVPKMMSFSIPVEAIGKIIGPGGKQIR 658
Query: 719 SIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTM-VPTVGDIYRNCEIKSIAP 777
+IIE+ + +D ++G V++++ D + + +++ I+ L P G+ Y +I I P
Sbjct: 659 AIIEDFELVNMDVGEEGGVQLSSFDTAKMGEAQTFITTLVRPEPVEGETYTG-KITGIHP 717
Query: 778 YGVFVEIAPGR--------EGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVN-DKGQL 828
+GVF+EI PG EGL H+SEL+ + E +K ++ ++ + + DKG+L
Sbjct: 718 FGVFLEILPGAEDGSYPGLEGLVHVSELAHERVRNCEGFMKSMNVEELTVKYLGKDKGKL 777
Query: 829 RLSRRALLPEADAENPPVKLPTGDPTKDAAA 859
+LSR+ALL E + G P+++AAA
Sbjct: 778 QLSRKALLEEQGGDGGRRNGSRG-PSREAAA 807
>gi|414164446|ref|ZP_11420693.1| polyribonucleotide nucleotidyltransferase [Afipia felis ATCC 53690]
gi|410882226|gb|EKS30066.1| polyribonucleotide nucleotidyltransferase [Afipia felis ATCC 53690]
Length = 714
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 334/764 (43%), Positives = 457/764 (59%), Gaps = 67/764 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV++ +G R + +ETG + RQA GAV T GET++ +V A P E DF PL VNYQE
Sbjct: 6 SVELDWGGRPLKLETGKVARQADGAVIATYGETVVIATVVSAKTPKEGIDFLPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP IKG+ +TQ++ LS+D +
Sbjct: 66 KTFAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIKGYRCDTQVIVTTLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA A+ LS VP + RV V ++FI+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMADTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L EE+++ AV G + + + L E K P+ ++TI E+ +
Sbjct: 186 VLMVESEAKELPEEVMLGAVMFGHKHFQPVIKAIIDLAEKAAKEPREIETID--NSEIDR 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + EL K I K R A+ ++++KV+
Sbjct: 244 DMRAVGEAELRKAYAIPVKQDRYAAVGAVKKKVMD------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ F ++ V VFKE+ + +R I++ G R
Sbjct: 279 -------------------HFFPEGQEPK---FDKLRVAGVFKELEADVVRNNILDTGVR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQFIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GRIG+P RREIGHG LA RA+ PVLP+ ++FPYT+RV S ITES
Sbjct: 376 TFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG + G+T+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTDKGVTSLQMDIKIAGITEEIMKIALTQAKDGRMHILGEMAKALTAARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I ++++ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+ + + S+
Sbjct: 550 GEHAPRIEVLQIPTDKIRDVIGTGGKIIREIVEKTGAK-INIEDDGTVKVASANGESIRA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++T P VG IY +K + +G FV ++GL HIS+L+ N + K DVV
Sbjct: 609 AIKWIKSITSEPEVGQIYDGTIVK-VMEFGAFVNFFGPKDGLVHISQLAPNRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRA--------LLPEADAENPP 845
K GD V VKL+ ++D+G++RLS +A L + AEN P
Sbjct: 668 KEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGEDLEAKQKAENAP 711
>gi|209883656|ref|YP_002287513.1| polynucleotide phosphorylase/polyadenylase [Oligotropha
carboxidovorans OM5]
gi|337739278|ref|YP_004631006.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM5]
gi|386028297|ref|YP_005949072.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM4]
gi|226702670|sp|B6JCR8.1|PNP_OLICO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209871852|gb|ACI91648.1| polyribonucleotide nucleotidyltransferase [Oligotropha
carboxidovorans OM5]
gi|336093365|gb|AEI01191.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM4]
gi|336096942|gb|AEI04765.1| polyribonucleotide nucleotidyltransferase Pnp [Oligotropha
carboxidovorans OM5]
Length = 714
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 333/764 (43%), Positives = 457/764 (59%), Gaps = 67/764 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV++ +G R + +ETG + RQA GAV T GET++ +V A P E DF PL VNYQE
Sbjct: 6 SVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +TQ++ LS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA A+ LS VP + RV V ++FI+NPT EM D+QLDL++AG+ A
Sbjct: 126 PDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVAGTATA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L EE+++ AV G + + + L E K P+ D + +L K
Sbjct: 186 VLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPR--DVVATVNADLEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ I ++L K I K R A+ + ++KVL G
Sbjct: 244 EILGIVEQDLRKAYSIPVKQDRYAAVGAAKDKVLEHFFPEG------------------- 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
I+P+ + ++ V VFK++ +K +R I++ GRR
Sbjct: 285 --------------------IEPR--------YEKLRVLDVFKDLEAKIVRWNILDTGRR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q ID+L + +
Sbjct: 317 IDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSLAGTYK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GRIG+P RREIGHG LA RA+ PVLP+ ++FPYT+RV S ITES
Sbjct: 376 TFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHHEFPYTLRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ D F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E G+T+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAKALTAARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I ++++ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+ + + S+
Sbjct: 550 GEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAK-INIEDDGTVKVASANGESIRA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++T P VG IY +K + +G FV ++GL HIS+L+++ + K DVV
Sbjct: 609 AIKWIKSITSEPEVGQIYDGTVVK-VMEFGAFVNFFGPKDGLVHISQLAASRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRA--------LLPEADAENPP 845
K GD V VKL+ ++D+G++RLS +A L + AEN P
Sbjct: 668 KEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGEDLEAKQKAENAP 711
>gi|449016416|dbj|BAM79818.1| polyribonucleotide nucleotidyltransferase [Cyanidioschyzon merolae
strain 10D]
Length = 909
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 337/768 (43%), Positives = 462/768 (60%), Gaps = 61/768 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNY 148
V + +P + I +ETG RQA GAV V G+T++Y + C +D P+ DF PL V+Y
Sbjct: 103 VDINVPGAEAPIQLETGFFARQAGGAVAVRSGDTVVYCTAC-SDAELSPNIDFVPLRVDY 161
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
E+FSA GRTS G+ KRE R D E+ V RLIDRPLRP + +GF+ ETQ+L+ V S+DG
Sbjct: 162 VEKFSAVGRTSAGYLKRE-RPGDREIQVSRLIDRPLRPCIAEGFFKETQVLANVFSFDGT 220
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGD-KFIVNPTTQEM--EDSQLDLLLA 265
H D LA+ AG A+ALS VP +AGVR+G+ D F+VNPT Q+M E +D+++A
Sbjct: 221 HQADTLAICGAGAALALSPVPMCARVAGVRIGMRQDGSFVVNPTEQQMRGECKYMDMVVA 280
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDT 319
G+ A+LMIE C F SE+ + +A++V Q A+ +I ++ L + PK
Sbjct: 281 GTSSAVLMIEAGCLFASEQQIAEAIEVAQRAIAQICEGIERLEALVTAAHPERAPKDDAD 340
Query: 320 IKLPPPELYKHVEEIAGEE-LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETV 378
++ L + +IA + L + ++I K R AL+ + E+VL
Sbjct: 341 LRRVRDTLLEQTRKIARKMGLSQAIRIAEKKQREAALAEIREQVL--------------- 385
Query: 379 GIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKF 438
+ L D ++E+ G DE E ++ +K V S
Sbjct: 386 -------EELLDAVTEQELETHGAADEEAF---------------ETLCRMAWKRVLSSE 423
Query: 439 LRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQR 498
+RR IV R+DGR +RPI LP AHGS LFTRGETQ+LAV+TLG + AQR
Sbjct: 424 MRRLIVREKVRADGRKPHQVRPIDIVQTPLPCAHGSTLFTRGETQTLAVVTLGGQDSAQR 483
Query: 499 IDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY 558
++L + FYLQY FPP +VGEVGRIGAP RREIGHG LA+RALEPV+P FPY
Sbjct: 484 SESLLGE-HTAHFYLQYMFPPFAVGEVGRIGAPGRREIGHGMLAQRALEPVVPPREVFPY 542
Query: 559 TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDT-----DEFGGD 613
IRVES I ESNGSSSMASVCGG LAL DAGVP+ ++AGVAMG++LD D
Sbjct: 543 VIRVESNIMESNGSSSMASVCGGSLALMDAGVPVSAAVAGVAMGLILDQTTEEPDVSRQS 602
Query: 614 GTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRH 673
+ LIL+DI G EDA GDMDFKVAG GITA QMDIKV GITL ++++AL+QA+D R H
Sbjct: 603 PSYLILTDILGMEDALGDMDFKVAGTRTGITALQMDIKVEGITLGIIREALEQARDARIH 662
Query: 674 ILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVE---AID 730
+L M P +++ P I I+ + P++I +IG GG+ V+SIIE G E ID
Sbjct: 663 MLDVMDAACSAPRSTVPSSVPKIKIINIDPKRIGDVIGPGGRVVRSIIEACGGEENITID 722
Query: 731 TEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAP--GR 788
E DG V I + LE++ +I N+TM V ++ + + P+G +VE+ P G+
Sbjct: 723 IEPDGVVSILGPETELLERAARMIRNITMDVEVSQVFEQARVTKVLPFGAYVELDPLTGK 782
Query: 789 EGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
EG HISE++ + + + EDV++ ++ VK++EVN +GQ+R+SR+ALL
Sbjct: 783 EGWLHISEIAWHHIDRIEDVLREDQVIAVKVLEVNARGQVRVSRKALL 830
>gi|307942752|ref|ZP_07658097.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
gi|307773548|gb|EFO32764.1| polyribonucleotide nucleotidyltransferase [Roseibium sp. TrichSKD4]
Length = 710
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 325/746 (43%), Positives = 457/746 (61%), Gaps = 61/746 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G R +++ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEVDWGGRPLVLETGKIARQADGAVMATYGETKVMATVVSAKSPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR +HE L RLIDRP+RP G+ ++TQ++ VLS+D + P
Sbjct: 67 AFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVILTVLSHDMENAP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ LS VP I G RVG + ++++NP +ME+S LDL++AG+ +A+
Sbjct: 127 DILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPAVDDMEESSLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP-PELYK 329
LM+E L E+ ++ AV GQ + + + + L E K P+ L LP EL+
Sbjct: 187 LMVESEAKELDEDTMLGAVVFGQKGFQPVIDAIIKLAETAAKEPREL---VLPDHSELFG 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
++ IA ++L +I +K R+ A+ + + KV+ + ENG
Sbjct: 244 TIKGIAEDDLKAAYKITSKTERKNAIDAAKAKVVEAVIENG------------------- 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D E V GE+ FK++ ++ +R I++ G R
Sbjct: 285 -GDAAPEATVVGEL---------------------------FKKLEAEIVRGAILDTGTR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R ISS G+LPRAHGSALFTRGETQ L V TLG + Q +D L+ + +
Sbjct: 317 IDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDLLQGTMK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYT+RV S ITES
Sbjct: 376 HFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMLPAHHEFPYTLRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K +AG+AMG++ + D F +LSDI G ED
Sbjct: 436 NGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG+E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM + L
Sbjct: 490 GDMDFKVAGSENGITSLQMDIKIDGITEEIMKVALAQAKDGRIHILGEMANAITEARSEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I ++K+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEHAPRIEMLKIPVDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGKAIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I+++ P VG IY +K + +G FV R+GL HIS+L+ +AK DVV
Sbjct: 609 AVNWINSIAAEPEVGVIYEGTVVKCV-DFGAFVNFFGARDGLVHISQLAPKKVAKVTDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +++G++RLS + +
Sbjct: 668 KEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|91203627|emb|CAJ71280.1| stronly similar to polynucleotide phosphorylase (PNPase)
[Candidatus Kuenenia stuttgartiensis]
Length = 705
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 335/746 (44%), Positives = 453/746 (60%), Gaps = 58/746 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G+R + +ETG + RQA GAV V GETI+ + A DF PL V+Y+E+ AA
Sbjct: 10 IGNRALSIETGRVARQADGAVLVQYGETIVLVTAVSASEEKGNVDFLPLTVDYREKTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR E+L RLIDRP+RP ++ E Q++S VLS D + PD LA
Sbjct: 70 GKFPGGFFKREGRPSQKEILTMRLIDRPIRPLFPDTYFREVQVMSIVLSADKENDPDILA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S +P K VRVG + +KFI+NPT E+ S +D++++G++DA++M+E
Sbjct: 130 MVGASAALSISSIPFCKPTGSVRVGQIEEKFIINPTHAELAQSSMDIVISGTEDAVMMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV-EEI 334
+ EE ++ A+ G A++EI L+E CGK K + + P + K + EEI
Sbjct: 190 ASAKEIPEEQMVDAIMFGHAAIKEIITLQHELIEKCGKEKQI----VAPSRMNKELMEEI 245
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
++K +++ EK LT GY K+ I+ I +
Sbjct: 246 ----------------KQKYYTAIVEKNLT--PGKGY-RKEALDEILAAIIN-------- 278
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
E V+G D TP ++K +F+ V + +R +IV G R D R
Sbjct: 279 -EYCVEGVED-----------APTPK-----EIKAIFETVETIVVREQIVSKGLRPDSRG 321
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
IRPI+ G+LPR HGSALFTRGETQ++ V+TLG Q++D LE D+ K+F L
Sbjct: 322 LKDIRPITCEVGILPRVHGSALFTRGETQAIVVVTLGTTSDEQKVDGLE-DEYSKKFMLD 380
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP VGE + P RREIGHG LAERAL VLP N FPYT RV S ITESNGSSS
Sbjct: 381 YNFPPFCVGETKPLRGPGRREIGHGALAERALAEVLPPPNKFPYTTRVVSDITESNGSSS 440
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGG LAL DAGVPIK +AG+AMG+V + + + ILSDI G+ED GDMDF
Sbjct: 441 MASVCGGTLALMDAGVPIKAPVAGIAMGLVKE------ENSVCILSDILGTEDHLGDMDF 494
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG G+TA QMDIK+ GIT +M+ AL QA++GR HIL E+ K P +S +AP
Sbjct: 495 KVAGTAQGVTALQMDIKIAGITEKIMRDALAQAREGRLHILQELEKVIEKPREKISVYAP 554
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I +K+ PEKI +IIG GGK +K I EETG + I+ EDDGTV I+A S EK+K I
Sbjct: 555 KIVQIKINPEKIGMIIGPGGKNIKKIQEETGAK-IEIEDDGTVIISATLGESAEKAKTWI 613
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG Y+ ++ SI YG FVEI PG +GL HISELS ++ KA DVV+VG
Sbjct: 614 ENMTKEVEVGKTYKG-KVLSIKEYGAFVEIIPGHDGLVHISELSYEYVEKAGDVVEVGQE 672
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEAD 840
+ +K+I ++D+ +++LSR+A L E++
Sbjct: 673 IMIKVIGIDDQKRVKLSRKAALKESE 698
>gi|365895014|ref|ZP_09433141.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3843]
gi|365424228|emb|CCE05683.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3843]
Length = 722
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 328/745 (44%), Positives = 443/745 (59%), Gaps = 57/745 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVIATYGETVVLATVVAAKAPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ LS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIITTLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDVLAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E L+E++++ AV G + + N + L E K TI + EL K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTI-IDNGELEKE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ IA +EL K I K R A+ + +EKV+
Sbjct: 245 MLGIAEQELRKAYAIPVKQERYAAVGAAKEKVMA-------------------------- 278
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
H P+ ++ + ++ V VFKE+ +K +R I++ GRR
Sbjct: 279 ------------------HFFPEGQEPK---YDKLRVADVFKELEAKIVRWNILDTGRRI 317
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 318 DGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKET 376
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT+RV S ITESN
Sbjct: 377 FLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTVRVVSEITESN 436
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+K AG+AMG++L+ + +LSDI G ED G
Sbjct: 437 GSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEDKRYA------VLSDILGDEDHLG 490
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA+DGR HIL EM K L
Sbjct: 491 DMDFKVAGTEGGITSLQMDIKIEGITEEIMRVALAQARDGRIHILGEMAKALTAARAELG 550
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++ +
Sbjct: 551 EYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASNDGEAMKAA 609
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++ P VG IY +K + +G FV R+GL HIS+L+ + K DVVK
Sbjct: 610 IKWIKSIASDPEVGQIYDGVVVK-VMEFGAFVNFFGSRDGLVHISQLADKRVQKTTDVVK 668
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +D+G+ RLS +A+
Sbjct: 669 EGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|341614812|ref|ZP_08701681.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium sp.
JLT1363]
Length = 774
Score = 580 bits (1495), Expect = e-162, Method: Compositional matrix adjust.
Identities = 324/761 (42%), Positives = 453/761 (59%), Gaps = 59/761 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V I +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKREGR + E L RLIDRP+RP +GFY+E ++ VLSYDG
Sbjct: 66 KFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEM--EDSQLDLLLAGSD 268
PD +A+ AA A+ +S VP I RVG ++ +NP+ Q E+ +LDL++A +
Sbjct: 126 PDIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSLQTALDEEGRLDLVVAATQ 185
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DA++M+E L+EE ++ AV + R++ + L E K ++
Sbjct: 186 DAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIDLAEQAAKEPWELASSDDNADMK 245
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+++++ GE++ K ++ +K R AL++ E+V + S +E
Sbjct: 246 AYIKDMVGEDIAKAYKLTDKSQRSDALNTARERV------KEHYSGEE------------ 287
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
DG+ +K T +KLV K++ S+ +R I++ G+
Sbjct: 288 ----------FDGQ------------QKMTA-------IKLV-KKIESEIVRGAILKDGQ 317
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +RPI + GLLPR HGSALFTRGETQ++ TLG K Q ID LE
Sbjct: 318 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLS-Y 376
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F L Y+FPP SVGEVGR G SRRE GHG LA RAL PVLPS DFPYTIR+ S ITE
Sbjct: 377 NHFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPSHEDFPYTIRILSDITE 436
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGGCL++ DAGVPI+ ++G+AMG++L+ DEF +LSDI G ED
Sbjct: 437 SNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDEFA------VLSDILGDEDH 490
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+E+GIT+ QMDIKV GIT +MK AL+QAK GR HIL EM K +
Sbjct: 491 LGDMDFKVAGSENGITSLQMDIKVAGITQEIMKTALEQAKAGRAHILGEMTKALGSARSG 550
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+SKHAP I M++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ + +E
Sbjct: 551 VSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSNADEIE 609
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ I + VG IY ++ +I +G FV G++GL H+SE+ + + K DV
Sbjct: 610 AARKWIEGIVEEAEVGKIY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDV 668
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
V G V VK++E++ +G++RLS R + E E + P
Sbjct: 669 VSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPP 709
>gi|316931583|ref|YP_004106565.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris DX-1]
gi|315599297|gb|ADU41832.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris DX-1]
Length = 722
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 324/746 (43%), Positives = 449/746 (60%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS P I RVG + D++++NP EM ++QL+L++AG+ DA
Sbjct: 126 PDVLAMVAASAALTLSGAPFRGPIGAARVGFINDEYVLNPVLDEMAETQLELVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSEE+++ AV G + + + + L E K P+ L I++ + K
Sbjct: 186 VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPREL--IEIDNAAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EK L
Sbjct: 244 EMLGLIEQELRAAYAIPVKQERYAAVGKVKEKALA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HFFPEGQEPK---YDKLRIAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I ++ G+LPRAHGSALFTRGETQ+L V TLG + Q +D+L + +
Sbjct: 317 IDGRDSKTVRSILAQAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+GGIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEQGITSLQMDIKIGGITEEIMKVALGQAKDGRIHILGEMSKALDRARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D S++
Sbjct: 550 GEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGESIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG+IY +K + +G FV ++GL HIS+L++ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGEIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus marinus
MC-1]
gi|187610282|sp|A0LE14.1|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus marinus
MC-1]
Length = 701
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 318/743 (42%), Positives = 460/743 (61%), Gaps = 57/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ FG++ I +ETG + RQA+GAV VT G+T++ + DFFPL+V+YQE+F
Sbjct: 9 VQFGEKTITLETGRVARQANGAVMVTYGDTVVLVTAVAETSMRAGQDFFPLSVHYQEKFW 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGF KRE R + EVL RLIDRP+RP KGF +ETQ+++ VLSYD + D
Sbjct: 69 AAGKIPGGFIKRETRPSEREVLTSRLIDRPIRPLFPKGFMNETQVVAQVLSYDPDYPSDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A+ALS VP I G RVG + K ++NPT ++ S+LDL++AG+ A+ M
Sbjct: 129 AALIGCSAALALSGVPFEGPIGGARVGFIDGKPVLNPTVDQLAASRLDLVVAGTRSAVTM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPK-MLDTIKLPPPELYKHVE 332
+E DFLSE+ ++ V ++ + + ++ LV GKP+ +++ +++ L + +
Sbjct: 189 VESEVDFLSEDEMLDCVMFAHESFQPVITAIEELVAEAGKPRWVVEPVQVNEALLAEMND 248
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
+ A ++ + I K+ R +A++ ++ + E +G +E
Sbjct: 249 KFAA-QVTEAYAIPEKMARYEAVAQVKAAAM------------EALGTIE---------- 285
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
VDG+ S K + +V +FK++ S+ LR+ +++ G+R DG
Sbjct: 286 ------VDGQ-----------SVKRSE------EVASLFKKIESRTLRQNVLQ-GKRVDG 321
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R IRPI+ +LPR HG+ALFTRGETQ++A +TLG + Q ++ L S + RFY
Sbjct: 322 RGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETL-SGEYRDRFY 380
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP VGE GR+GAP RREIGHG LA RAL ++PS FPYT+R+ S ITESNGS
Sbjct: 381 LNYTFPPYCVGETGRMGAPGRREIGHGKLATRALTAIVPSAEVFPYTLRITSEITESNGS 440
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCG LA+QDAGVPIK +AG+AMG+V + D + +LSDI G ED GDM
Sbjct: 441 SSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEGDAYA------VLSDILGDEDHLGDM 494
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAGN DGITA QMDIK+ GIT +M KAL+QA+ GR HIL EM K +S +
Sbjct: 495 DFKVAGNADGITALQMDIKITGITREIMAKALEQARAGRLHILGEMGKAMTTHRAEMSAY 554
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP IH MK+ P+KI +IGSGGK ++SI EETG AID EDDGT++I + D +S E++
Sbjct: 555 APRIHTMKIHPDKIREVIGSGGKVIRSITEETGC-AIDIEDDGTIRIASSDQASAEQAVK 613
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II ++ G +Y ++ I +G FV I P ++GL HIS+L++ + DVVK G
Sbjct: 614 IIKSIVAEVEKGQVYEG-KVVRITDFGAFVNILPNKDGLVHISQLANRRVQNVTDVVKEG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
D+V VK+++V+ +G+++L+ + +
Sbjct: 673 DVVTVKVLDVDRQGRVKLTMKEM 695
>gi|319898331|ref|YP_004158424.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
gi|319402295|emb|CBI75834.1| polyribonucleotide nucleotidyltransferase [Bartonella clarridgeiae
73]
Length = 733
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 324/775 (41%), Positives = 469/775 (60%), Gaps = 61/775 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GA+ T GET++ +V A P +FFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKRE R + E L+ RLIDRP+RP ++G+ ++TQ++ V+ +D + P
Sbjct: 67 NYAVGKIPGGYFKRENRPNESETLISRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IA R+G ++I+NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E +++ A+ GQ + + + N + L E+ K P+ D I L K+
Sbjct: 187 LMVESEAHELPENVMLNAIMFGQKSFQPVINAIIKLAEVAAKEPR--DFIPENLSVLEKN 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ ++L I +K R A+ L+E+V+ N ++ K E
Sbjct: 245 MLKMVEQDLKDAYTITDKQKRHTAIDVLKEEVI-----NKFMQKTE-------------- 285
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E+ E F+ + VFK + +K +R+ I++ G+R
Sbjct: 286 --ENCE-------------------------FNTDQIATVFKHLQAKIVRQNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L V TLG + Q ID+L + +
Sbjct: 319 DGRNPSDVRAIQSEVGILPRTHGSALFTRGETQALVVTTLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE+GRIG+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + ++F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEKFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALTSARSELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + DL ++E +
Sbjct: 552 EFSPRIEMMNITVDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASSDLKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P +G IY+ +K IA +G FV R+GL HIS+L+S +AK D+VK
Sbjct: 611 KHWILSIVDEPEIGAIYQGTVVK-IAEFGAFVNFFGSRDGLVHISQLASERVAKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE---NPPVKLPTGDPTKDAAASDK 862
GD V VKL+ +++G++RLS + + + E N +K + T + S+K
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMKVVDQQTGKELINNDSIKTEKDNNTDEKNPSEK 724
>gi|328545912|ref|YP_004306021.1| polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
SL003B-26A1]
gi|326415652|gb|ADZ72715.1| Polyribonucleotide nucleotidyltransferase [Polymorphum gilvum
SL003B-26A1]
Length = 708
Score = 577 bits (1487), Expect = e-161, Method: Compositional matrix adjust.
Identities = 321/747 (42%), Positives = 454/747 (60%), Gaps = 63/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G R +++ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEVEWGGRPLILETGKVARQADGAVMATYGETKVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR +HE L RLIDRP+RP +G+ ++TQ++ VLS+D + P
Sbjct: 67 AFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFAEGYKNDTQVIVTVLSHDMENAP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP + G RVG + ++++NP +M +S LDL++AG+ DA+
Sbjct: 127 DILALVASSAALTLSGVPFMGPVGGARVGYINGEYVLNPLIDDMPESSLDLIVAGTGDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP-PELYK 329
LM+E L E++++ AV G + + + + L E K P+ L+ LP L+
Sbjct: 187 LMVESEAKELPEDVMLGAVMFGHSGFQTVIDAIIKLAETAAKEPRGLN---LPDHSALFA 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPDLL 388
+++IA E+L I K RR A+ + + KV+ +++ G + TV + DL
Sbjct: 244 RIKDIAAEDLKAAYTITGKTERRNAVDAAKTKVVEAVITNAGDAAPAATV-----VGDL- 297
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
FK++ ++ +R I+E G
Sbjct: 298 ------------------------------------------FKKLEAEIVRGAIIETGH 315
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI S G+LPRAHGSALFTRGETQ L V TLG + Q +D LE +
Sbjct: 316 RIDGRDLKTVRPIVSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQFVDALEGTYKA 375
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYT+RV S ITE
Sbjct: 376 -HFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAKHEFPYTLRVVSEITE 434
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG LAL DAGVP+K +AG+AMG++ + D F +LSDI G ED
Sbjct: 435 SNGSSSMATVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFA------VLSDILGDEDH 488
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +GIT+ QMDIK+ GIT +MK AL+QA++GR HIL EM K
Sbjct: 489 LGDMDFKVAGTAEGITSLQMDIKIQGITEEIMKVALEQAREGRVHILGEMSKAITEARPE 548
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
L +HAP I +MK+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVKI + D +++
Sbjct: 549 LGEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKIASADGKAIK 607
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I+++ P VG IY +K + +G FV ++GL HIS+L+ +AK DV
Sbjct: 608 AAINWINSIAAEPEVGMIYEGTVVKCV-EFGAFVNFFGAKDGLVHISQLAPRKVAKVTDV 666
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
VK GD V VKL+ +++G++RLS + +
Sbjct: 667 VKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|319405094|emb|CBI78698.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. AR 15-3]
Length = 733
Score = 577 bits (1487), Expect = e-161, Method: Compositional matrix adjust.
Identities = 318/745 (42%), Positives = 456/745 (61%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GA+ T GET++ +V A P +FFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAIIATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKRE R + E L+ RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 NYAVGKIPGGYFKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IA R+G ++I+NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + N + L E+ K P+ D I L +
Sbjct: 187 LMVESEAHELPEDVMLNAVMFGQKSFQPVINAIIKLAEVAAKEPR--DFIPEDLSILENN 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ ++L I +K R A+ L+EKV I + + +
Sbjct: 245 MLKMIEQDLRDTYTITDKQKRHAAIDLLKEKV---------------------INNFIPE 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+E+ E F+ + VFK + +K +R+ I++ G+R
Sbjct: 284 AEENCE-------------------------FNTDQIATVFKNLQAKIVRKNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S GL PR HGSALFTRGETQ+L + TLG + Q ID+L + +
Sbjct: 319 DGRNLSDVRPIQSEVGLFPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE+GRIG+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + ++F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGEQFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALARARSELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I IM + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + DL ++E +
Sbjct: 552 EFSPRIEIMNIPVDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASSDLKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K IA +G FV R+GL HIS+L+S +AK D+VK
Sbjct: 611 KHWILSIVDEPEVGSIYQGTVVK-IAEFGAFVNFFGSRDGLVHISQLASERVAKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|224000017|ref|XP_002289681.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
CCMP1335]
gi|220974889|gb|EED93218.1| polyribonucleotide nucleotidyltransferase [Thalassiosira pseudonana
CCMP1335]
Length = 721
Score = 577 bits (1487), Expect = e-161, Method: Compositional matrix adjust.
Identities = 326/735 (44%), Positives = 456/735 (62%), Gaps = 69/735 (9%)
Query: 118 VTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVC 177
+T G++++Y + D DF PL+V +QERFS+AG TSG F KR+GR +HE+LVC
Sbjct: 1 MTRGDSVLYATAS-RDKDKRDIDFLPLSVEHQERFSSAGTTSGAFNKRDGRPAEHEILVC 59
Query: 178 RLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGV 237
RLIDRPLRP + +G+ HETQ+LSW+LSYDG+ D LA+TA+ A+ LS+VP K +A
Sbjct: 60 RLIDRPLRPLIAEGWRHETQLLSWILSYDGVRTCDPLAITASAAALWLSDVPLLKPVAAA 119
Query: 238 RVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAV 297
VG + + ++NPT ++M+ S+L+L +AG+ +A+LMIEG DFL E+++++AV G +A+
Sbjct: 120 MVGYIDGQLVLNPTVEQMKHSRLNLTVAGTKEAVLMIEGAADFLPEDLMVEAVTFGHEAI 179
Query: 298 REISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSS 357
+ ++ L ++ GK K D+IK P L + ++E+ + KV +I N +K S+
Sbjct: 180 KIQCAGLEELGKVAGKAKKYDSIKPPVEGLQEAMDELFTD---KVDEIFNGDMAKKDQSA 236
Query: 358 LEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKS 417
+ ++ +E V +LE E++ P+ + +
Sbjct: 237 AQSQL------------NEAV--------MLEFEEK-----------------YPEEKAA 259
Query: 418 TPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALF 477
VK FK++ + + + G R DGR + +R I S GL PR HGSALF
Sbjct: 260 ---------VKAAFKDLLCRRMFAKAKASGTRIDGRKLNEVRVIDSEAGLFPRVHGSALF 310
Query: 478 TRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIG 537
TRGETQ +A TLGD M Q+ID + +E KRFYLQY+FPPS VGE GR+GAP RRE+G
Sbjct: 311 TRGETQVVATATLGDSGMRQKIDRISGMEE-KRFYLQYTFPPSCVGETGRVGAPGRREVG 369
Query: 538 HGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIA 597
HG LAERAL P LPS+ DFPY IRVES +TESNGSSSMASVCGGCLAL DAGVPIK IA
Sbjct: 370 HGNLAERALVPTLPSEADFPYAIRVESLVTESNGSSSMASVCGGCLALMDAGVPIKSPIA 429
Query: 598 GVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITL 657
G+AMGM+L D +I+SDI G+EDA G MDFKVAGN++GIT FQ+DIK G+TL
Sbjct: 430 GIAMGMLLGDKGGVSDENAVIVSDILGTEDALGTMDFKVAGNKEGITTFQLDIKCEGLTL 489
Query: 658 PVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKV 717
MKKAL QAK+GR HIL EM K P L P + + + P+ I +IG GG+++
Sbjct: 490 ETMKKALDQAKEGRLHILGEMEKALKEPRAELPASVPKMIKVTISPDSIGKVIGPGGRQI 549
Query: 718 KSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII-SNLTMVPTVGDIYRNCEIKSIA 776
+++IE+ ++ ID ++ G ++I D+ +EK+K +I + + P G IY +I I
Sbjct: 550 RALIEDFKLDNIDVDESGEIQILGFDMEQMEKAKEMIPTYVGPEPEEGKIYTG-KITGIH 608
Query: 777 PYGVFVEI--------APGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEV-----N 823
+GVFVEI PG EGLCH+SEL + E ++ ++ + +EV N
Sbjct: 609 NFGVFVEILPGAEDGSTPGLEGLCHVSELHIERVRNTEGFIRA---MNTETLEVVYQGKN 665
Query: 824 DKGQLRLSRRALLPE 838
KGQ +LSR+A+L E
Sbjct: 666 KKGQHQLSRKAVLEE 680
>gi|118590504|ref|ZP_01547906.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
12614]
gi|118436967|gb|EAV43606.1| polynucleotide phosphorylase/polyadenylase [Stappia aggregata IAM
12614]
Length = 709
Score = 577 bits (1486), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/746 (43%), Positives = 452/746 (60%), Gaps = 60/746 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G R +++ETG + RQA GAV + GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEVEWGGRPLVLETGKVARQADGAVMASYGETKVLATVVSAKSPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR +HE L RLIDRP+RP G+ ++TQ++ VLS+D + P
Sbjct: 67 AFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDLENAP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP I G RVG + ++++NP +M +S LDL++AG++DA+
Sbjct: 127 DILAMVASSAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESTLDLVVAGTNDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP-PELYK 329
LM+E L E++++ AV G + + + + L E K P+ L LP EL+
Sbjct: 187 LMVESEAKELDEDIMLGAVMFGHKGFQPVIDAIIKLAETAAKEPREL---VLPDHSELFG 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V+ +A +LV +I +K R+ A+ + + KV+ L N
Sbjct: 244 KVKAMAESDLVAAYKITSKTDRKNAIDAAKAKVVEALITNAA------------------ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
E E E + GE FK++ ++ +R I++ G R
Sbjct: 286 -EGEAVESTILGEQ---------------------------FKKLEAEIVRGAILDTGTR 317
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R ISS G+LPRAHGSALFTRGETQ L V TLG + Q ID LE +
Sbjct: 318 IDGRDLSTVRAISSEVGILPRAHGSALFTRGETQGLVVATLGTGEDEQYIDLLEGTVK-S 376
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P++P ++FPYT+RV S ITES
Sbjct: 377 HFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMMPPHHEFPYTVRVVSEITES 436
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG L+L DAGVP+K +AG+AMG++ D D F +LSDI G ED
Sbjct: 437 NGSSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKDGDRFA------VLSDILGDEDHL 490
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +DGIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 491 GDMDFKVAGTQDGITSLQMDIKIDGITEEIMKVALGQAKDGRIHILGEMSKAITEARAEL 550
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I +MK+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVKI + D +++
Sbjct: 551 GEHAPRIEVMKIPVDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKIASADGKAIKA 609
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I+++ P VG IY +K + +G FV ++GL HIS+L+ +AK DV+
Sbjct: 610 AVNWINSIAAEPEVGMIYEGTVVKCV-DFGAFVNFFGAKDGLVHISQLAPKKVAKVTDVI 668
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +++G++RLS + +
Sbjct: 669 KEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|91974709|ref|YP_567368.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisB5]
gi|123749482|sp|Q13EM2.1|PNP_RHOPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91681165|gb|ABE37467.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisB5]
Length = 722
Score = 577 bits (1486), Expect = e-161, Method: Compositional matrix adjust.
Identities = 323/746 (43%), Positives = 446/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLRLETGKVARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ A+ A+ LS P I RVG + D++++NP EM ++QLDL++AG+ DA
Sbjct: 126 PDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSEE+++ AV G + + + + AL E K P+ L I E K
Sbjct: 186 VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIALAEKAAKEPRELTVIDDSAIE--K 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EK +
Sbjct: 244 EMLGLVEQELRAAYAIAVKQERYAAVGKVKEKAIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HFFPEGQEPK---YDKLRIAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q +D+L + +
Sbjct: 317 IDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E G+T+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D S++
Sbjct: 550 GEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGESIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG+IY +K + +G FV ++GL HIS+L++ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGEIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|323138133|ref|ZP_08073206.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
49242]
gi|322396595|gb|EFX99123.1| polyribonucleotide nucleotidyltransferase [Methylocystis sp. ATCC
49242]
Length = 717
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 331/747 (44%), Positives = 450/747 (60%), Gaps = 65/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ + R++++ETG + RQA GAV + GET + +V A P DFFPL VNYQE+
Sbjct: 8 ELDWAGRKLVLETGKVARQADGAVMASWGETTVLATVVSAKAPKPGQDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP G+ +TQ++ VLS+D + PD
Sbjct: 68 FAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRCDTQVIVTVLSHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ LS VP + G RVG + + +NPT +EM+ S LDL++AG+ DA+L
Sbjct: 128 ILAMVAASAALTLSGVPFMGPVGGARVGYINGQLKLNPTIEEMKLSDLDLVVAGTSDAVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E LSEE +++AV G + + + + L E K D L P+L HV
Sbjct: 188 MVESEAKELSEETMLEAVMTGHRGFQPVIDAIIRLAERAAK----DPRDLIVPDL-AHVA 242
Query: 333 E----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
E IA +L + + K R A+ +++ KV+T L G
Sbjct: 243 EAVARIAEADLREAYKHTVKQERYAAVDAVKAKVMTELFPEG------------------ 284
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
S P F++ V VFKE+ +K +R I++ G
Sbjct: 285 ----------------------------SEPA-FTKEQVGEVFKELQAKVVRWNILDTGI 315
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI + G+LPR HGSALFTRGETQ+L V TLG + Q +D+LE +
Sbjct: 316 RIDGRDVKTVRPIVAEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK- 374
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ +FPYT+RV S ITE
Sbjct: 375 ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAAEFPYTLRVVSEITE 434
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED
Sbjct: 435 SNGSSSMATVCGTSLALMDAGVPLKAPTAGIAMGLILEGERFA------VLSDILGDEDH 488
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+T+ QMDIK+ GIT +MK AL QAKDGR HIL EM K
Sbjct: 489 LGDMDFKVAGTSNGVTSLQMDIKIAGITEEIMKVALAQAKDGRLHILGEMAKALTTSRAE 548
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
L + AP I +K+ +KI +IGSGGK ++ I+E+TG + I+ EDDGTVK+ + D +S++
Sbjct: 549 LGEFAPRIETLKIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKVASSDGNSIK 607
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I ++ P VG IY +K+ A +G FV ++GL HIS+LS +AK DV
Sbjct: 608 AAINWIKSIASDPEVGMIYEGTVVKT-ADFGAFVNFFGAKDGLVHISQLSKQRVAKTTDV 666
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
VK GD V VKL+ +D+G++RLS RA+
Sbjct: 667 VKEGDRVKVKLLGFDDRGKVRLSMRAV 693
>gi|192288867|ref|YP_001989472.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris TIE-1]
gi|226702683|sp|B3QAB0.1|PNP_RHOPT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|192282616|gb|ACE98996.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris TIE-1]
Length = 722
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 447/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP I RVG + D++++NP EM ++QL+L++AG+ DA
Sbjct: 126 PDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSEE+++ AV G + + + + L E K P+ L + E+ K
Sbjct: 186 VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVD--DSEIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EK +
Sbjct: 244 EMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HFFPEGQEPK---YDKLRIAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I ++ G+LPR HGSALFTRGETQ+L V TLG + Q +D+L S +
Sbjct: 317 IDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQALVVTTLGTGEDEQYVDSL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D S++
Sbjct: 550 GEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGESIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P +G+IY +K + +G FV ++GL HIS+L++ + K DVV
Sbjct: 609 AIKWIKSIASDPEIGEIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|39933509|ref|NP_945785.1| polynucleotide phosphorylase [Rhodopseudomonas palustris CGA009]
gi|81564252|sp|Q6NCN8.1|PNP_RHOPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|39647355|emb|CAE25876.1| polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris CGA009]
Length = 722
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 447/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKVARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP I RVG + D++++NP EM ++QL+L++AG+ DA
Sbjct: 126 PDVLAMVAASAALTLSGVPFKGPIGAARVGFINDEYVLNPVLDEMAETQLELVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSEE+++ AV G + + + + L E K P+ L + E+ K
Sbjct: 186 VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIDLAEKAAKEPRELTVVD--DSEIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EK +
Sbjct: 244 EMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKAIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HFFPEGQEPK---YDKLRIAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I ++ G+LPR HGSALFTRGETQ++ V TLG + Q +D+L S +
Sbjct: 317 IDGRDSKTVRNILAQVGVLPRTHGSALFTRGETQAMVVTTLGTGEDEQYVDSL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D S++
Sbjct: 550 GEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGESIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG+IY +K + +G FV ++GL HIS+L++ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGEIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|86747731|ref|YP_484227.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris HaA2]
gi|123099194|sp|Q2J2J4.1|PNP_RHOP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86570759|gb|ABD05316.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris HaA2]
Length = 718
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/746 (43%), Positives = 445/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GETI+ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKVARQADGAVVATYGETIVLATVVAAKTPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS P I RVG + D++++NP EM ++QL+L++AG+ DA
Sbjct: 126 PDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMPETQLELVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSEE+++ AV G + + + + L E K P+ L + + + K
Sbjct: 186 VLMVESEAKELSEEIMLGAVMFGHRHFQPVIDAIIELAEKAAKEPREL--VVIDDSAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EK +
Sbjct: 244 EMLGLVEQELRAAYAIPVKQERYAAVGKVKEKAIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ + + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HFFPEGEEPK---YDKLRIAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q +D+L + +
Sbjct: 317 IDGRDSKTVRSIIAEAGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYVDSLAGTYK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIRPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D S++
Sbjct: 550 GEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGESIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG+IY +K + +G FV ++GL HIS+L+S + K DVV
Sbjct: 609 AIKWIKSIASDPEVGEIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLASGRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS R +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMRVV 693
>gi|75674227|ref|YP_316648.1| polynucleotide phosphorylase [Nitrobacter winogradskyi Nb-255]
gi|123614401|sp|Q3SWP5.1|PNP_NITWN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74419097|gb|ABA03296.1| 3'exoribonuclease [Nitrobacter winogradskyi Nb-255]
Length = 718
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 328/769 (42%), Positives = 455/769 (59%), Gaps = 59/769 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS P I RVG + D++++NPT E+ D+QLDL++AG+ DA
Sbjct: 126 PDILAMVAASAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEIVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSEE++++AV G + + + + L E K P+ L I E+ K
Sbjct: 186 VLMVESEAKELSEEIMLKAVMFGHRHFQPVIDAIIELAEKAAKEPRELKVID--DTEIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + ++L I K R A+ ++EK L
Sbjct: 244 EMLGLVEQDLRAAYAIPVKQDRYAAVGKVKEKALA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ V VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HFFPEGQEPK---YDKLRVAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I + G+LPRAHGSALFTRGETQ++ V TLG + Q ID+L + +
Sbjct: 317 IDGRDVKTVRNIVAEAGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSLAGTYK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGAKRREIGHGKLAWRAIRPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG L+L DAGVP+K AG+AMG++L+ + + +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGERYA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALDRARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+HAP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D S++
Sbjct: 550 GEHAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGESIKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG+IY +K + +G FV ++GL HIS+L++ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGEIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAA 858
K G V VKL+ +D+G+ RLS + + E + + GD ++AA
Sbjct: 668 KEGAKVKVKLLGFDDRGKTRLSMKVVDQETGEDLEAKQKAEGDAPREAA 716
>gi|452990674|emb|CCQ98083.1| polynucleotide phosphorylase (PNPase) [Clostridium ultunense Esp]
Length = 708
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 316/746 (42%), Positives = 457/746 (61%), Gaps = 58/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
++++ +++ +ETG + +QASGAV V G+T++ ++V ++ P E DFFPL VNY+E
Sbjct: 7 TLELDIAGKKMTLETGKVAKQASGAVLVRFGDTVVLSTVTVSKEPKE-LDFFPLTVNYEE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R A G+ GGF KREGR + +L RLIDRP+RP +GF +E QI++ VLS D +
Sbjct: 66 RLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQIVNLVLSVDQDYS 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
+ A+ A+++SE+P + I GV VG V K+++NPT +E E S L L++AG+ DA
Sbjct: 126 SEIAAMVGTSCALSISEIPFNGPIGGVIVGRVAGKYVINPTVEEAEKSDLHLVVAGTKDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+ M+E FL+EE ++Q + G +++I E++ GKPKM T+ E+
Sbjct: 186 VNMVEAGAKFLTEEEMLQGIIAGHTEIKKICEEIEKFAVRVGKPKMEVTLYQVNEEIDHA 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V + A E+L++ +Q +K R++A+ ++ E+ L S Y ++E + E + ++L++
Sbjct: 246 VRDFAREKLIQAIQTPDKQARQEAIDAVNEETLNHFS-TLYTEEEEIRQVSEILHNILKE 304
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E +RR I R
Sbjct: 305 E-----------------------------------------------VRRLITHEKIRP 317
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI++ GLLPR HGS LFTRG+TQ+L+V TLG Q +D L+ ++E KR
Sbjct: 318 DGRALTEIRPITTEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLEEE-KR 376
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F Y+FPP SVGE + AP RREIGHG L ERALEP++PS+ +FPYTIR+ S + ESN
Sbjct: 377 FMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALEPIIPSEEEFPYTIRLVSEVLESN 436
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S AS+C +AL DAGVPIK +AGVAMG++ D D + IL+DI G ED G
Sbjct: 437 GSTSQASICASTMALMDAGVPIKAPVAGVAMGLIKDGDHYS------ILTDIQGMEDHLG 490
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG + GITA QMDIK+ GIT ++ +AL+QAK+GR IL +M + P +LS
Sbjct: 491 DMDFKVAGTDFGITALQMDIKIEGITYEIIDQALKQAKEGRLFILNKMRETIAEPRKNLS 550
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I +++ P+KI +IG GG+ + II+ETGV+ ID E DG V I + ++ K+
Sbjct: 551 PYAPKIITLRIDPDKIREVIGPGGRMINKIIDETGVK-IDIEQDGRVYIASPNMEQNMKA 609
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K II +L VG+ Y +K I +G FVE+ PG+EGL HIS+L+ N + K EDVVK
Sbjct: 610 KKIIEDLVREVVVGETYLGT-VKRIEKFGAFVEVIPGKEGLVHISQLAPNRVNKVEDVVK 668
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD V VK+IE++D+G++ LSR+A+L
Sbjct: 669 VGDTVLVKVIEIDDQGRVNLSRKAVL 694
>gi|27375890|ref|NP_767419.1| polynucleotide phosphorylase [Bradyrhizobium japonicum USDA 110]
gi|81740094|sp|Q89WB3.1|PNP_BRAJA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27349028|dbj|BAC46044.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 110]
Length = 720
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/746 (43%), Positives = 446/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ+++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A+ A+ LS P I RVG V D++++NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ + I L K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVID--NAALEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EKV+
Sbjct: 244 EMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HYFPEGQEPK---YDKLRIAGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ++ V TLG + Q ID L S +
Sbjct: 317 IDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV ++GL HIS+L+S + K DVV
Sbjct: 609 AIKWIKSIASEPEVGQIYDGTVVK-VMEFGAFVNFFGSKDGLVHISQLASARVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|296285001|ref|ZP_06862999.1| polynucleotide phosphorylase/polyadenylase [Citromicrobium
bathyomarinum JL354]
Length = 769
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/761 (42%), Positives = 451/761 (59%), Gaps = 59/761 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + +G + + +ETG + RQA GAV T GET++ +V A E DFFPL VNYQE
Sbjct: 6 TVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKKVKEGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKRE R + E LV RLIDRP+RP +GFY+E +++ VLS+DG
Sbjct: 66 KFSAAGRIPGGFFKREARPTEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQ--LDLLLAGSD 268
PD +A+ AA A+ +S VP IA RVG ++ +NPT D + LDL++A ++
Sbjct: 126 PDIVAMIAASAALTISGVPFMGPIASARVGFRNGEYELNPTQSAALDDEGRLDLVVAATN 185
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DA++M+E L+EE ++ AV D R++ + L E K ++
Sbjct: 186 DAVMMVESEAKELTEEEMLGAVMFAHDECRKVIGAIIELAEQAAKDPWELASGDDHADMK 245
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
++++ G+++ K ++ +K R AL+ EKV + S +E
Sbjct: 246 SAIKQMIGDDIAKAYKLTDKSARSDALNEAREKV------KAHYSSEE------------ 287
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
DG+ +K T +KLV K++ S+ +R I++ G+
Sbjct: 288 ----------FDGQ------------QKMTA-------IKLV-KKLESEIVRGAILKDGQ 317
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +RPI + GLLPR HGS+LFTRGETQ++ TLG K Q ID LE
Sbjct: 318 RIDGRKLDEVRPIEAIVGLLPRTHGSSLFTRGETQAICTTTLGTKDAEQMIDGLEGLS-Y 376
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F L Y+FPP SVGEVGR G RREIGHG LA RAL PVLPS DFPYTIRV S ITE
Sbjct: 377 NHFMLHYNFPPYSVGEVGRFGFTGRREIGHGKLAWRALHPVLPSHEDFPYTIRVLSDITE 436
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGGCL++ DAGVPI+ ++G+AMG++L+ D+F +LSDI G ED
Sbjct: 437 SNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFA------VLSDILGDEDH 490
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+E GIT+ QMDIKV GIT +M KAL+QAK GR HIL EM K
Sbjct: 491 LGDMDFKVAGSESGITSLQMDIKVAGITQEIMAKALEQAKAGRAHILGEMTKALGSARTG 550
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+SKHAP I M++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ + +E
Sbjct: 551 VSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSNADEIE 609
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ I + VG IY ++ +I +G FV G++GL H+SE+ + + K DV
Sbjct: 610 AARKWIEGIVEEAEVGKIY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDV 668
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
V G V VK++E++++G++RLS R + E E + P
Sbjct: 669 VSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPP 709
>gi|398820450|ref|ZP_10578972.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
YR681]
gi|398228878|gb|EJN14978.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
YR681]
Length = 718
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 325/746 (43%), Positives = 445/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ+++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIATVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A+ A+ LS P I RVG V D++++NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFVNDEYVLNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ + I L K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVID--NAALEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EKV+
Sbjct: 244 EMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HYFPEGQEPK---YDKLRIGAVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ L V TLG + Q ID L S +
Sbjct: 317 IDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQGLVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV ++GL HIS+L+S + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGSKDGLVHISQLASARVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|395785548|ref|ZP_10465280.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th239]
gi|423717553|ref|ZP_17691743.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th307]
gi|395425095|gb|EJF91266.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th239]
gi|395426953|gb|EJF93069.1| polyribonucleotide nucleotidyltransferase [Bartonella tamiae Th307]
Length = 734
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 324/754 (42%), Positives = 456/754 (60%), Gaps = 58/754 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIDWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKEPKAGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E L+ RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVTVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ LS VP I G RVG + ++++NP EM +S LDL++AG+ +A+
Sbjct: 127 DILSIVAASAALTLSGVPFMGPIGGARVGYINGQYVLNPNIDEMPESTLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ L +L K
Sbjct: 187 LMVESEAQELPEDIMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFSPEDLS--DLEKK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++A ++L K Q+ +K R A+ +++ KV I + +P+ +ED
Sbjct: 245 MLKLAEKDLRKAYQMTDKQERYSAVDAVKAKV-----------------IEKFLPEGVED 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
D +S + VFK + +K +R I++ G R
Sbjct: 288 GD-----------------------------YSAEQIATVFKHLQAKIVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID+L + +
Sbjct: 319 DGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GRIG+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPMLPAKESFPYTIRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP++ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLQRPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GIT+ QMDIK+ GIT +MK AL QAK GR HIL EM K L
Sbjct: 492 DMDFKVAGTENGITSLQMDIKIDGITEEIMKIALDQAKGGRIHILGEMAKALTGARAELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + EKI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + D +++ +
Sbjct: 552 EFAPRIEMMNIPVEKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTVKIASSDAKTIDAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG+IY +K+ A +G FV R+GL HIS+LS +AK DVV+
Sbjct: 611 KRWIHSIIDEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLSPERVAKTTDVVQ 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
G V VKL+ +++G++RLS + + E E P
Sbjct: 670 DGQKVWVKLMGFDERGKVRLSMKVVDQETGKEIP 703
>gi|197106893|ref|YP_002132270.1| polynucleotide phosphorylase [Phenylobacterium zucineum HLK1]
gi|226702673|sp|B4RC48.1|PNP_PHEZH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|196480313|gb|ACG79841.1| polyribonucleotide nucleotidyltransferase [Phenylobacterium
zucineum HLK1]
Length = 715
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 316/742 (42%), Positives = 441/742 (59%), Gaps = 56/742 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + + +ETG M RQA GAV T GET++ + A P DFFPL VNYQE+F
Sbjct: 9 IEWGGKTLTLETGRMARQADGAVLATYGETMVLATAVFAKSPKPGQDFFPLTVNYQEKFY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ G F +REG E L RLIDRP+RP +KGF +E Q++ VL++D + PD
Sbjct: 69 AAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPLFVKGFKNEVQVICTVLAHDLENDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
+A+ AA A+ LS VP IA RVG V ++++NPT EM++S +DL++AG+ +A++M
Sbjct: 129 VAMVAASAALVLSGVPFMGPIAAARVGYVNGEYVLNPTLDEMKESAMDLVVAGTAEAVMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E L+EE ++ V ++ + + + L E K + D E+ V++
Sbjct: 189 VESEIKELTEEQVLGGVTFAHKGMQPVIDAIIELAEHSAK-EPFDFQPDDTDEIAAKVKD 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+ G +L QI K R A+ + +EK +T +++
Sbjct: 248 LIGGDLRAAYQITGKSERHAAIGAAKEKAMTAFAKS------------------------ 283
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
++ P + + VFKE+ + +RR I+E G+R DGR
Sbjct: 284 ----------------------EANPEGYDANKLGGVFKEIEADIVRRSILETGKRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPI G+LPRAHGSALFTRGETQ+L V TLG Q ID LE ++F L
Sbjct: 322 TVDQVRPILGEVGVLPRAHGSALFTRGETQALCVTTLGTGDDEQLIDALEGK-YFEKFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR+G+P RRE+GHG LA RAL P+LPS +FPYTIR+ S I ESNGSS
Sbjct: 381 HYNFPPFSVGETGRMGSPGRREVGHGKLAWRALRPMLPSYEEFPYTIRIVSEIFESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMA+VCG LAL DAGVP+K ++G+AMG++L+ D F +LSDI G ED GDMD
Sbjct: 441 SMATVCGSSLALMDAGVPLKKPVSGIAMGLILEKDGFA------VLSDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG DGIT+ QMDIK+ GIT +MKKAL+QAK GR HILAEM K P L + A
Sbjct: 495 FKVAGTADGITSLQMDIKIAGITEEIMKKALEQAKGGRDHILAEMNKAMTAPRAELGEFA 554
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I +K+ +KI +IGSGGK ++ I+E+TG + ID +DGT+KI A + + ++ +K
Sbjct: 555 PKIETIKIPVDKIREVIGSGGKVIREIVEKTGAK-IDIGEDGTIKIAAAEQTKIDAAKEW 613
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ P VG IY +K I +G FV ++GL H+S++S+ +AK DV+ G
Sbjct: 614 IKSIASEPEVGQIYTGKVVK-IVDFGAFVNFFGAKDGLVHVSQISNERVAKVSDVLTEGQ 672
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
V VKL+ +D+G+ RLS + +
Sbjct: 673 QVKVKLLGFDDRGKTRLSMKVV 694
>gi|347527557|ref|YP_004834304.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. SYK-6]
gi|345136238|dbj|BAK65847.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. SYK-6]
Length = 780
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 319/765 (41%), Positives = 450/765 (58%), Gaps = 60/765 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I +G + + +ETG + RQA GAV T GET++ +V A + DFFPL V+YQE
Sbjct: 6 TVEIEWGGKTLKLETGRVARQADGAVLATYGETVVLCAVTAAKSVKDGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ VLS+DG
Sbjct: 66 KFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ +S VP I VRVG ++ +NP+ E++ +LDL++A +D A
Sbjct: 126 PDILAMIAASAALTISGVPFMGPIGAVRVGYKDGEYQLNPSLDEVKSGELDLVVAATDAA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E LSEE+++ AV + R++ + L E K + EL
Sbjct: 186 VMMVESEAKELSEEVMLGAVMFAHEESRKVIGAIIQLAEKAAKEPWELNLGDGNAELKAK 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++++ G ++ ++ NK R AL+S +K + G ++ GI
Sbjct: 246 LKDLIGADIAAAYKLTNKSERSNALNSARDKAKEYFAAQGLDAQSVMAGI---------- 295
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
KLV K++ + +R I++ G+R
Sbjct: 296 -------------------------------------KLV-KKIEADIVRTAILKEGQRI 317
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + +
Sbjct: 318 DGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLSYES 376
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ DFPYTIRV S ITESN
Sbjct: 377 FMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDFPYTIRVLSDITESN 436
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ ++F +LSDI G ED G
Sbjct: 437 GSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGEDF------TVLSDILGDEDHLG 490
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GIT QMDIKV GIT + + AL QAKDGR HIL EM K + LS
Sbjct: 491 DMDFKVAGTSEGITTMQMDIKVAGITKEIFEAALHQAKDGRAHILGEMNKALDSTRSELS 550
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D++ +E +
Sbjct: 551 AHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSDIAQIEAA 609
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
KA I + VG IY N ++ ++ +G FV G++GL H+SE+ + + K DV+K
Sbjct: 610 KAWILGIVEEAEVGKIY-NGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNERVEKVADVLK 668
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE---NPPVKLPTGD 852
G V VK++E++ +G++RLS R + E E P + P GD
Sbjct: 669 EGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPRGD 713
>gi|85373534|ref|YP_457596.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter litoralis
HTCC2594]
gi|123409685|sp|Q2NBZ2.1|PNP_ERYLH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84786617|gb|ABC62799.1| polyribonucleotide nucleotidyltransferase [Erythrobacter litoralis
HTCC2594]
Length = 769
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 328/769 (42%), Positives = 457/769 (59%), Gaps = 64/769 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V I +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAARSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKREGR + E L RLIDRP+RP +GFY+E +++ VLSYDG
Sbjct: 66 KFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGD-KFIVNPTTQEM--EDSQLDLLLAGS 267
PD +A+ AA A+ +S +P I RVG D ++++NP+ + ED LDL++A +
Sbjct: 126 PDIVAMIAASAALTISGLPFMGPIGAARVGFTNDGEYVLNPSVVDALGEDGNLDLVVAAT 185
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE 326
DA++M+E L+EE ++ AV + R++ + L E K P LD ++
Sbjct: 186 QDAVMMVESEAKELTEEQMLGAVMFAHEESRKVIGAIIDLAEQAAKDPWELDPVEDKSAA 245
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L K + + G++L K +I NK R+ A+++ K S+
Sbjct: 246 LEK-LRGVIGDDLAKAYKITNKAQRQDAVNAARTKAREHYSD------------------ 286
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
LE+ D E + R +KLV K++ S +R+ I++
Sbjct: 287 -LEESDPAEYM----------------GR-----------LKLV-KKLESDIVRKAILKD 317
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+R DGR D +RPI + GLLPR HGSALFTRGETQ++ TLG K Q ID LE
Sbjct: 318 GQRIDGRKTDEVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDSEQMIDGLEGLS 377
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
F L Y+FPP SVGEVGR G SRRE GHG LA RAL PVLP + +FPYTIRV S I
Sbjct: 378 -YSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPVLPDNEEFPYTIRVLSDI 436
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ D+F +LSDI G E
Sbjct: 437 TESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGDDF------TVLSDILGDE 490
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+E+GIT+ QMDIKV GIT +M KAL+QAK GR HIL +M +
Sbjct: 491 DHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTKALEQAKAGRAHILGKMTEALGSSR 550
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+SKHAP I M++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ +
Sbjct: 551 GEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSNADE 609
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I + VG IY N ++ +I +G FV G++GL H+SE+ + + K
Sbjct: 610 IEAARKWIEGIVEEAEVGKIY-NGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPT 668
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE---NPPVKLPTGD 852
DVV G V VK++E++ +G++RLS R + E E P + P GD
Sbjct: 669 DVVSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPPREPRGD 717
>gi|386399287|ref|ZP_10084065.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM1253]
gi|385739913|gb|EIG60109.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM1253]
Length = 717
Score = 573 bits (1478), Expect = e-160, Method: Compositional matrix adjust.
Identities = 332/770 (43%), Positives = 454/770 (58%), Gaps = 60/770 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A+ A+ LS P I RVG D+FI+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+EE+++ AV G + + N + L E K P+ + TI L K
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTTID--NSALEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EKV+
Sbjct: 244 EMLGMVEQELRAAYAIPVKQDRYAAVGKVKEKVIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HYFPEGQEPK---YDKLRIGGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR +IL EM K L
Sbjct: 490 GDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKDGRIYILGEMSKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASNDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV ++GL HIS+L+S + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGSKDGLVHISQLASARVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAA 859
K GD V VKL+ +D+G+ RLS + + E E+ K + P ++AA
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVVDQET-GEDLEGKGESQQPAREAAG 716
>gi|374571715|ref|ZP_09644811.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM471]
gi|374420036|gb|EHQ99568.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
WSM471]
Length = 717
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 332/770 (43%), Positives = 454/770 (58%), Gaps = 60/770 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A+ A+ LS P I RVG D+FI+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+EE+++ AV G + + N + L E K P+ + TI L K
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTTID--NSALEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EKV+
Sbjct: 244 EMLGMVEQELRAAYAIPVKQDRYAAVGKVKEKVIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HYFPEGQEPK---YDKLRIGGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDSKTVRNIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR +IL EM K L
Sbjct: 490 GDMDFKVAGTEQGITSLQMDIKIEGITEEIMKVALGQAKDGRIYILGEMSKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV ++GL HIS+L+S + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGSKDGLVHISQLASARVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAA 859
K GD V VKL+ +D+G+ RLS + + E E+ K + P ++AA
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVVDQET-GEDLEGKGESQQPAREAAG 716
>gi|451940181|ref|YP_007460819.1| polynucleotide phosphorylase/polyadenylase [Bartonella australis
Aust/NH1]
gi|451899568|gb|AGF74031.1| polynucleotide phosphorylase/polyadenylase [Bartonella australis
Aust/NH1]
Length = 733
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 322/745 (43%), Positives = 451/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLTIETGKIARQADGAVIATYGETVVLATVVSAKSAKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKREGR ++E L+ RLIDRP+RP + G+ ++TQI+ V+ +D + P
Sbjct: 67 AYAVGKIPGGYFKREGRPNENETLISRLIDRPIRPLFVDGYKNDTQIIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++I+NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPNIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ D +L K
Sbjct: 187 LMVESEAQELPEDVMLGAVIFGQKGFQPVLDAIIKLAEVAAKEPR--DFTPEDLSDLEKT 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++A ++L K I +K R A+ +++ +++ E P + E+
Sbjct: 245 MLKMAEQDLRKAYAITDKQERYAAIDAIKTEIIN-----------------EFRPKMEEN 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
D FS + VFK + + +R+ I++ G+R
Sbjct: 288 CD-----------------------------FSVDQIATVFKNLQAMIVRQNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+ PR HGSALFTRGETQ+L V TLG + Q ID+L + +
Sbjct: 319 DGRNLSTVRPIKSEVGIFPRTHGSALFTRGETQALVVTTLGTSEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GRIG+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPMLPTRESFPYTIRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ IAG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPIAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAKDGR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILGEMAKALTSARGELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D +E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASTDAKIIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG +Y+ +K+ A +G FV R+GL HIS+L+S +AK DVVK
Sbjct: 611 KRWIHSIVDEPEVGAVYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLTSERVAKTIDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKLI +++G++RLS + +
Sbjct: 670 EGDKVWVKLIGFDERGKIRLSMKVV 694
>gi|395787129|ref|ZP_10466730.1| polyribonucleotide nucleotidyltransferase [Bartonella birtlesii
LL-WM9]
gi|395411553|gb|EJF78074.1| polyribonucleotide nucleotidyltransferase [Bartonella birtlesii
LL-WM9]
Length = 733
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 319/745 (42%), Positives = 451/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F A GR GG+ KRE R ++E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 FYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMSESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPR--DFVPEDLSDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ EIA + + K I +K R A+ +L+ +V+ + ET G E
Sbjct: 245 MLEIAEQGIRKAYTITDKQERYAAIDALKTEVINKFTP-------ETGGSSE-------- 289
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ G+R
Sbjct: 290 -------------------------------FSAEQIATVFKQLQAKVVRGNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGLLPRTHGSALFTRGETQAMVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ IAG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPIAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QA++GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAREGRIHILNEMAKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P +G IY+ +K+ A +G FV R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPEIGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVTKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKII 694
>gi|456351638|dbj|BAM86083.1| polyribonucleotide nucleotidyltransferase [Agromonas oligotrophica
S58]
Length = 719
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 330/772 (42%), Positives = 453/772 (58%), Gaps = 62/772 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVGASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ D + + K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPR--DVAIIDNAAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ IA ++L I K R A+ +++EKV+ G
Sbjct: 244 EMLGIAEQDLRTAYAIPIKQQRYAAVGAVKEKVMAYFFPEGQ------------------ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+PK + ++ V VFKE+ +K +R I++ G+R
Sbjct: 286 ---------------------EPK--------YDKLRVSAVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR A +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S +TES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEVTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA+DGR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQARDGRIHILGEMSKALTAARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P +G IY +K + +G FV R+GL HIS+L+ + K DVV
Sbjct: 609 AIKWIKSIASDPEIGQIYDGTVVK-VMEFGAFVNFFGTRDGLVHISQLADKRVQKTTDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPT--GDPTKDAAA 859
K GD V VKL+ +D+G+ RLS +A + + E+ K T GD ++AA
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKA-VDQTTGEDLEAKQKTEGGDAPREAAG 718
>gi|334140673|ref|YP_004533875.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp.
PP1Y]
gi|333938699|emb|CCA92057.1| polyribonucleotide nucleotidyltransferase [Novosphingobium sp.
PP1Y]
Length = 761
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 316/753 (41%), Positives = 439/753 (58%), Gaps = 60/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSMEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKRE + E L RLIDRP+RP +GFY+E ++ VLSYDG
Sbjct: 66 KFSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINCIAQVLSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQE-MEDSQLDLLLAGSDD 269
PD +A+ AA A+ +S VP I RVG V ++ +NP + + D +LDL++A + D
Sbjct: 126 PDVVAMIAASAALTISGVPFMGPIGACRVGFVDGQYTLNPKQEAALADGRLDLVVAATGD 185
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E L+EE ++ AV D +++ N + L E K + ++
Sbjct: 186 AVMMVESEAKELTEEEMLGAVMFAHDECKKVVNLIIDLAEQAAKEPWEIDLSDNTADIKA 245
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
++E+ G+++ ++ +K R AL++ K
Sbjct: 246 KLKEVVGKDVAAAYKLTDKSARSNALNAARAKA--------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+E D E V IK K+V ++ +R I++ G+R
Sbjct: 279 -----KEAFADAEPQTQMVAIK------------------TMKKVEAEIVRGAILKDGQR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D +RPI S G LPR HGSALFTRGETQ++ TLG K Q ID LE
Sbjct: 316 IDGRKLDQVRPIESMVGFLPRTHGSALFTRGETQTICTTTLGTKDSEQMIDGLEGLS-YS 374
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ DFPYTIRV S +TES
Sbjct: 375 AFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDFPYTIRVLSDVTES 434
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCGGCL++ DAGVPI+ ++G+AMG++L+ D+F +LSDI G ED
Sbjct: 435 NGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDDFA------VLSDILGDEDHL 488
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E+GIT QMDIK+ GIT +M KAL+QAK GR HIL EM K L
Sbjct: 489 GDMDFKVAGTENGITTMQMDIKIAGITKEIMGKALEQAKAGRAHILGEMTKALGSARTEL 548
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ DL +E
Sbjct: 549 SAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSDLDQIEA 607
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I + VG IY ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 608 AKNWILGIVEEAEVGKIYTG-KVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVV 666
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++++G++RLS R + E E
Sbjct: 667 SEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEE 699
>gi|383768327|ref|YP_005447390.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
S23321]
gi|381356448|dbj|BAL73278.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
S23321]
Length = 718
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 325/746 (43%), Positives = 444/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A+ A+ LS P I RVG D+FI+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ + I L K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVID--NSALEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EKV+
Sbjct: 244 EMLGLVEQELRSAYAIPVKQDRYAAVGKVKEKVMA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HYFPEGQEPK---YDKLRISGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 490 GDMDFKVAGTEAGITSLQMDIKIEGITEEIMKVALGQAKDGRIHILGEMAKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV ++GL HIS+L+S+ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGSKDGLVHISQLASSRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|397676595|ref|YP_006518133.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397284|gb|AFN56611.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 748
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 329/750 (43%), Positives = 452/750 (60%), Gaps = 60/750 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G +++ +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE++
Sbjct: 8 EIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKY 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
SAAGR GGFFKRE + E L+ RLIDRP+RP +GFY+ET +++ V+SYDG + PD
Sbjct: 68 SAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENEPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ALS VP I RVG +FI+NPT +++E S LDL++ + DA++
Sbjct: 128 ILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVGATRDAVM 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + L EE+++ AV ++++ + + L E K + + + L VE
Sbjct: 188 MVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAK-EPWELVSYDDSALAAKVE 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+ + K ++ K R +ALS +
Sbjct: 247 ELCYDNFDKAYRLTRKAERVEALSKAK--------------------------------- 273
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
V+D E D K + +K + K++ +K +R I++ GRR DG
Sbjct: 274 ----AVLDEAFPEADPTEKLRIQK-------------LAKKLEAKIVRTAILKEGRRIDG 316
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI S+ G LPR HGSALFTRGETQ+L TLG Q ID L + +RF
Sbjct: 317 RDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGL-TGLHYERFM 375
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS DFPYTIRV S ITESNGS
Sbjct: 376 LHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPYTIRVLSDITESNGS 435
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCGGCLAL DAGVP+ ++G+AMG++L+ D F ILSDI G ED GDM
Sbjct: 436 SSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFA------ILSDIMGDEDHLGDM 489
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E GIT+ QMDIKV GIT +M+KAL+QAK GR HIL EM K + +S
Sbjct: 490 DFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKALGEVRSEISNL 549
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M V +KI +IG+GGK ++ I+ TG + +D EDDGTV++++ D +++E ++
Sbjct: 550 APRIETMSVPKDKIRDVIGTGGKVIREIVATTGAK-VDIEDDGTVRLSSSDPANIEAARE 608
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I+ + P VG IY N ++ +I +G FV GR+GL H+SE+ + + K DV+ G
Sbjct: 609 WINGIVEEPEVGKIY-NGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNKVSDVLSEG 667
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V VK++E++++G++RLS R + E AE
Sbjct: 668 QEVKVKVLEIDNRGKVRLSMRVVDQETGAE 697
>gi|338707657|ref|YP_004661858.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294461|gb|AEI37568.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 754
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 334/751 (44%), Positives = 451/751 (60%), Gaps = 62/751 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G +++ +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE++
Sbjct: 8 EIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKY 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
SAAGR GGFFKRE + E LV RLIDRP+RP GFY+ET +++ V+SYDG + PD
Sbjct: 68 SAAGRIPGGFFKRERGASERETLVSRLIDRPIRPLFPDGFYNETLLIAQVMSYDGENEPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ALS VP I RVG ++I+NPT ++E+S LDL++ + DA++
Sbjct: 128 ILAMIAASAALALSGVPFLGPIGAARVGYQDGEYILNPTLAQLENSDLDLVVGATRDAVM 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSEE+++ AV +++ + + L E K P L + L V
Sbjct: 188 MVESEAKELSEEIMLDAVSFAHKSLQPVIKAIINLAEQAAKEPWELSSYD--DTALAAKV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
EE+ + L K ++ K R +A+S K +L E PD E
Sbjct: 246 EELCKDSLDKAYRLTKKSERVEAIS----KAKAVLDE--------------AFPDADASE 287
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++ ++ + K++ +K +R I++ GRR D
Sbjct: 288 --------------------------------KLRIQKLAKKLEAKIVRTAILKEGRRID 315
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S+ G LPR HGSALFTRGETQ+L TLG Q ID L +RF
Sbjct: 316 GRDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGLNGL-HYERF 374
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS DFPYTIRV S ITESNG
Sbjct: 375 MLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPYTIRVLSDITESNG 434
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGGCLAL DAGVP+K ++G+AMG++L+ D F ILSDI G ED GD
Sbjct: 435 SSSMATVCGGCLALMDAGVPLKRPVSGIAMGLILEKDGFA------ILSDIMGDEDHLGD 488
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E+GIT+ QMDIKV GIT +M KAL+QAK GR HIL EM K + LS
Sbjct: 489 MDFKVAGTEEGITSLQMDIKVAGITEEIMGKALEQAKAGRAHILGEMSKALGEVRSELSN 548
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I M V +KI +IG+GGK ++ I+ TG + +D EDDGTV++++ D + +E ++
Sbjct: 549 LAPRIETMSVPKDKIRDVIGTGGKVIREIVATTGAK-VDIEDDGTVRLSSSDPAQIEAAR 607
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I+ + P VG IY N ++ +I +G FV GR+GL H+SE+ + + K DV+
Sbjct: 608 NWITGIIEEPEVGKIY-NGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNKVSDVLAE 666
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++++G++RLS R + E AE
Sbjct: 667 GQEVKVKVLEIDNRGKVRLSMRVVDQETGAE 697
>gi|405377158|ref|ZP_11031104.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF142]
gi|397326357|gb|EJJ30676.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF142]
Length = 716
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 324/773 (41%), Positives = 455/773 (58%), Gaps = 69/773 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA+
Sbjct: 127 DILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ PE Y
Sbjct: 187 LMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PEDYSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E +A EL + +I K R A+ +++ KV
Sbjct: 241 LESEMLGLAEGELREAYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 --------------------KAHFLPEEGEAR---YTAEEVGAIFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAA 859
DVVK GD V VKL+ +++G++RLS + + E P + GD KD AA
Sbjct: 665 DVVKEGDKVWVKLLGFDERGKVRLSMKVVDQATGQEIPAAE--KGDKKKDEAA 715
>gi|384411996|ref|YP_005621361.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|335932370|gb|AEH62910.1| polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 748
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 329/750 (43%), Positives = 452/750 (60%), Gaps = 60/750 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G +++ +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE++
Sbjct: 8 EIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKY 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
SAAGR GGFFKRE + E L+ RLIDRP+RP +GFY+ET +++ V+SYDG + PD
Sbjct: 68 SAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENEPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ALS VP I RVG +FI+NPT +++E S LDL++ + DA++
Sbjct: 128 ILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVGATRDAVM 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + L EE+++ AV ++++ + + L E K + + + L VE
Sbjct: 188 MVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAK-EPWELVSYDDSALAAKVE 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+ + K ++ K R +ALS
Sbjct: 247 ELCYDNFDKAYRLTRKAERVEALSK----------------------------------- 271
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+ V+D E D K + +K + K++ +K +R I++ GRR DG
Sbjct: 272 --AKAVLDEAFPEADPTEKLRIQK-------------LAKKLEAKIVRTAILKEGRRIDG 316
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI S+ G LPR HGSALFTRGETQ+L TLG Q ID L + +RF
Sbjct: 317 RDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGL-TGLHYERFM 375
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS DFPYTIRV S ITESNGS
Sbjct: 376 LHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPYTIRVLSDITESNGS 435
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCGGCLAL DAGVP+ ++G+AMG++L+ D F ILSDI G ED GDM
Sbjct: 436 SSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFA------ILSDIMGDEDHLGDM 489
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E GIT+ QMDIKV GIT +M+KAL+QAK GR HIL EM K + +S
Sbjct: 490 DFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKALGEVRSEISNL 549
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M V +KI +IG+GGK ++ I+ TG + +D EDDGTV++++ D +++E ++
Sbjct: 550 APRIETMSVPKDKIRDVIGTGGKVIREIVATTGAK-VDIEDDGTVRLSSSDPANIEAARE 608
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I+ + P VG IY N ++ +I +G FV GR+GL H+SE+ + + K DV+ G
Sbjct: 609 WINGIVEEPEVGKIY-NGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNKVSDVLSEG 667
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V VK++E++++G++RLS R + E AE
Sbjct: 668 QEVKVKVLEIDNRGKVRLSMRVVDQETGAE 697
>gi|148251685|ref|YP_001236270.1| polynucleotide phosphorylase/polyadenylase [Bradyrhizobium sp.
BTAi1]
gi|187470940|sp|A5E870.1|PNP_BRASB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146403858|gb|ABQ32364.1| Polyribonucleotide nucleotidyltransferase [Bradyrhizobium sp.
BTAi1]
Length = 720
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 323/746 (43%), Positives = 443/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ LS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMTDTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ D + + K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPR--DVAIIDNSAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ IA ++L K I K R A+++++EKV+ G
Sbjct: 244 EMLGIAEQDLRKAYAIPVKQERYAAVAAVKEKVMAYFFPEGQ------------------ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+PK + ++ V VFKE+ +K +R I++ GRR
Sbjct: 286 ---------------------EPK--------YEKLRVADVFKELEAKIVRWNILDTGRR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S +TES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEVTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ + +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA++GR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKALTAARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P +G IY +K + +G FV R+GL HIS+L+ + K DVV
Sbjct: 609 AIKWIKSIASDPEIGQIYDGTVVK-VMEFGAFVNFFGTRDGLVHISQLADKRVQKTTDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS +A+
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|417851111|ref|ZP_12496891.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
gi|338220035|gb|EGP05616.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. gallicida str. Anand1_poultry]
Length = 714
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 312/751 (41%), Positives = 445/751 (59%), Gaps = 55/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E QI++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 122 QICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + + +K GKP+ P L
Sbjct: 182 DKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L + +I K R + + +++ V I + ++
Sbjct: 242 IEKVKAIAEARLGEAYRITEKQARYEQIDAIKADV-----------------IAQITAEV 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED EE +VD +F + S+ +R RI+ G
Sbjct: 285 AEGEDISEEKIVD-----------------------------IFTALESQIVRSRIIAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 316 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 375 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 489 HLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +S
Sbjct: 549 DISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNSA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I ++T G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 608 KEVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ VG V VK++E++ +G++RL+ + + P+
Sbjct: 667 YLAVGQEVTVKVVEIDRQGRIRLTMKEVAPK 697
>gi|452822281|gb|EME29302.1| polyribonucleotide nucleotidyltransferase [Galdieria sulphuraria]
Length = 945
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 317/747 (42%), Positives = 456/747 (61%), Gaps = 50/747 (6%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V + GDR ETG RQA GAV V DG+T+++ + C + +DF P V+Y ER
Sbjct: 131 VFVQVGDRIWSFETGRFARQAGGAVVVRDGDTMVFCTACTETKNIKTTDFLPFRVDYFER 190
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
FS+ G+T G + KREGR D E+L+ RLIDRPLRP + +G+++ETQ+LS V SYDG+H P
Sbjct: 191 FSSLGKTIGAYHKREGRPSDLEILISRLIDRPLRPMITEGYFYETQVLSNVFSYDGVHLP 250
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGL-VGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
D LA+ ++ALS VP K +A VRV + D ++NP + + ++LDL+++G+ D
Sbjct: 251 DVLAICGCSASLALSSVPMKKTVAAVRVAIDKEDSIVINPENKILSTAKLDLVVSGTVDG 310
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+EG +F+SE+ L+ AV+ ++ +I + +LV+ GK K I +P ++
Sbjct: 311 VLMVEGGAEFVSEDTLMTAVEAAHSSIVKICEAIDSLVKRAGKAKFPGKIIVPSEQMISL 370
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V+ +AG EL + L + +K R +A+ E++ T + + E TI
Sbjct: 371 VDSLAGIELDQALNVFSKKERDEAI----ERIRTQVIDAAISRWKENDCTAHTI------ 420
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
ED+DE + + +++ +K+V S +R+ I++ R
Sbjct: 421 EDDDE--------------------------YFDAKLRMSWKKVLSSRMRQFILDKQIRP 454
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK- 509
DGR D IRPI G L R HGS+LFTRGETQ+L V TLG ++ AQ + L D EVK
Sbjct: 455 DGRDLDTIRPIDIIQGPLLRTHGSSLFTRGETQALVVATLGGEENAQHYETL--DGEVKS 512
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RFYLQY FPP SVGEVG++G P RREIGHG LAERAL P++PS +FPY IRVES ITES
Sbjct: 513 RFYLQYFFPPFSVGEVGKLGPPGRREIGHGRLAERALAPIIPSREEFPYVIRVESNITES 572
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL +AGVPI+ ++GVAMG+++D + IL+DI G EDA
Sbjct: 573 NGSSSMASVCGGCLALMEAGVPIRNPVSGVAMGLIVDGSKVA------ILTDILGIEDAL 626
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG G+TA QMD+K+ GI + V++++L +A++ R IL ML P P +L
Sbjct: 627 GDMDFKVAGTAHGVTAVQMDMKMEGIGMDVLRQSLYRAREARGKILESMLNIMPRPKPNL 686
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEA---IDTEDDGTVKITAKDLSS 746
P I +++ + I +IG GGK +++IIE G EA I DG V IT+ D +
Sbjct: 687 PASVPRICALQIPTKSIGELIGPGGKHIRNIIEACGGEALVSIYIGQDGLVSITSSDEDT 746
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
L+++ ++ N +G Y + I P+G+FVE+ G+EG CHISE+ + +
Sbjct: 747 LKRAVDMVENSVRRVEIGQEYIG-RVTRILPFGMFVELFQGKEGWCHISEVGVERVESID 805
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRR 833
++KVGD V++IE+++K +R+SRR
Sbjct: 806 KIMKVGDECKVRVIEIDEKRGVRVSRR 832
>gi|357976253|ref|ZP_09140224.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. KC8]
Length = 767
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 319/750 (42%), Positives = 443/750 (59%), Gaps = 59/750 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G + + +ETG + RQA+GAV T GET++ +V A E DFFPL V+YQE++
Sbjct: 8 EIQWGGKTLTLETGRVARQANGAVVATLGETVVLCAVTAARSVKEGQDFFPLTVHYQEKY 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
++GR GGFFKRE + E LV RLIDRP+RP +GFY+E ++ VLSYDG + PD
Sbjct: 68 FSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENEPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ LS VP I RVG +FI+NPT ++ + +LDL++AG+ DA++
Sbjct: 128 ILAMIAASAALTLSGVPFMGPIGAARVGYQDGEFILNPTDAQVAEGELDLVVAGTHDAVM 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E LSEE+++ AV G ++++ + + L E K + + ++
Sbjct: 188 MVESEAKELSEEIMLGAVMFGHREMQKVLDAIIGLAEQAAKDPWDLAAQPDTSAMKTKLK 247
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
++ G+E+ ++ NK R AL+ K + D
Sbjct: 248 KLVGKEITAAYKLTNKSARSDALNEARAKAKVAFA----------------------DAS 285
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+++V + KLV K++ ++ +R I++ GRR DG
Sbjct: 286 PQDQMVAN---------------------------KLV-KKLEAEIVRTAILKDGRRIDG 317
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI + LPRAHGSALFTRGETQ++A TLG K Q ID L + + F
Sbjct: 318 RDTKTVRPIEATVHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGL-TGLRYENFM 376
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGEVGR GAP RREIGHG LA RAL VLP+ +FPYTIR+ S ITESNGS
Sbjct: 377 LHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHGVLPTKEEFPYTIRLTSDITESNGS 436
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCGG LAL DAGVPIK ++G+AMG++L+ +F +LSDI G ED GDM
Sbjct: 437 SSMATVCGGSLALMDAGVPIKRPVSGIAMGLILEGKDFA------VLSDILGDEDHLGDM 490
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +GIT+ QMDIK+ GIT +MK AL+QA GR HIL EM K LS H
Sbjct: 491 DFKVAGTSEGITSLQMDIKIAGITEEIMKVALEQASGGRAHILGEMAKALDHTREELSAH 550
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M V EKI +IG+GGK ++ I+ +TG + +D EDDGTVKI++ D +E +K
Sbjct: 551 APRIETMNVPKEKIRDVIGTGGKVIREIVAQTGAK-VDIEDDGTVKISSSDPEKIEAAKN 609
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I + VG IY ++ ++ +G FV G++GL H+SE+ + +AK DV+ G
Sbjct: 610 WIIGIVAEAEVGKIY-TGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVAKVSDVLSEG 668
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V VK++EV+ +G++RLS R + E AE
Sbjct: 669 QEVKVKVLEVDQRGKVRLSMRVVDQETGAE 698
>gi|384214500|ref|YP_005605664.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 6]
gi|354953397|dbj|BAL06076.1| polyribonucleotide nucleotidyltransferase [Bradyrhizobium japonicum
USDA 6]
Length = 717
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 325/746 (43%), Positives = 443/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A+ A+ LS P I RVG D+FI+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVASSAALTLSGAPFKGPIGAARVGFANDEFILNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ + I L K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVTVID--NSALEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + +EL I K R A+ ++EKV+
Sbjct: 244 EMLGLVEQELRAAYAIPVKQDRYAAVGKVKEKVIA------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ ++ + ++ V VFKE+ +K +R I++ G+R
Sbjct: 279 -------------------HYFPEGQEPK---YDKLRVSGVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDSKTVRNIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S ITES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEDKRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAK+GR HIL EM K L
Sbjct: 490 GDMDFKVAGTEAGITSLQMDIKIEGITEEIMKVALGQAKEGRIHILGEMAKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV ++GL HIS+L+S + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGSKDGLVHISQLASARVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|315634794|ref|ZP_07890076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
gi|315476346|gb|EFU67096.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter segnis
ATCC 33393]
Length = 742
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/752 (41%), Positives = 446/752 (59%), Gaps = 58/752 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 36 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVAVVAKKDVKEGQDFFPLTVNY 95
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 96 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 155
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 156 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTD 215
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K LV GKP+ P +L
Sbjct: 216 KAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTDLI 275
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A L +I K R + + +++ V+ ++
Sbjct: 276 NKVKALAEARLGDAYRITEKQARYEQIDAIKADVVAQITA-------------------- 315
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDEEV SE + +F + S+ +R RI+ G
Sbjct: 316 ----EDEEV-------------------------SEGKIIDIFTALESQIVRGRIIAGEP 346
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 347 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 405
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 406 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITE 465
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 466 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKF------VVLSDILGDEDH 519
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 520 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 579
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++++
Sbjct: 580 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAVQ 638
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I ++T G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 639 DVMARIEDITAEVEAGAIYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDY 697
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
++VG V VK++E++ +G++RL+ + L P+ D
Sbjct: 698 LQVGQEVMVKVVEIDRQGRIRLTMKELAPKQD 729
>gi|85710513|ref|ZP_01041577.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
gi|85687691|gb|EAQ27696.1| polyribonucleotide nucleotidyltransferase [Erythrobacter sp. NAP1]
Length = 762
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 325/756 (42%), Positives = 448/756 (59%), Gaps = 61/756 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKREGR + E L RLIDRP RP +GFY+E +++ VLSYDG
Sbjct: 66 KFSAAGRIPGGFFKREGRATEKETLTSRLIDRPCRPLFPEGFYNEINVIAQVLSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGD-KFIVNPTTQEM--EDSQLDLLLAGS 267
PD +A+ AA A+ +S VP I RVG D ++++NPT + ED +LDL++A +
Sbjct: 126 PDIVAMIAASAALTISGVPFMGPIGAARVGFTNDGEYVLNPTVADALGEDGRLDLVVAAT 185
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE 326
DA++M+E L+EE ++ AV + R++ + L E K P LD ++ +
Sbjct: 186 QDAVMMVESEAKELTEEEMLGAVMFAHEESRKVIGAIIELAEQAAKAPWELDPVEDKSAK 245
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ K I G +L +I +K R+ A+++ EK E D
Sbjct: 246 MDKLRAAI-GSDLEAAYKITDKSARQDAVNAAREKAR------------------EAFAD 286
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
L E + P T +KLV K++ S+ +R I++
Sbjct: 287 LAESD--------------------PAEYLGT--------LKLV-KKLESEIVRGSILKD 317
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR D +RPI + GLLPR HGSALFTRGETQ++ TLG K Q ID LE
Sbjct: 318 GTRIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLS 377
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
F L Y+FPP SVGEVGR G SRRE GHG LA RAL PVLP +FPYTIRV S I
Sbjct: 378 -YSNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAFRALRPVLPDAEEFPYTIRVLSDI 436
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCGG L++ DAGVP+ ++G+AMG++L+ ++F +LSDI G E
Sbjct: 437 TESNGSSSMATVCGGALSMMDAGVPLARPVSGIAMGLILEGEDFA------VLSDILGDE 490
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+E+GIT+ QMDIKV GIT +M +AL+QAK GR HIL EM K
Sbjct: 491 DHLGDMDFKVAGSEEGITSLQMDIKVAGITQEIMTQALEQAKAGRAHILGEMAKALTGAR 550
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+SKHAP I M++ KI +IG+GGK ++ I+ ETG + +D +D+GT+KI++ +
Sbjct: 551 TEVSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGTIKISSSNADE 609
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E +K I + VG IY N ++ +I +G FV G++GL H+SE+ + + K
Sbjct: 610 IEAAKKWIEGIVEEAEVGKIY-NGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPT 668
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVV G V VK++E++++G++RLS R + E E
Sbjct: 669 DVVSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEE 704
>gi|56551445|ref|YP_162284.1| polynucleotide phosphorylase [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752942|ref|YP_003225835.1| polynucleotide phosphorylase/polyadenylase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|81355362|sp|Q5NQ32.1|PNP_ZYMMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56543019|gb|AAV89173.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552305|gb|ACV75251.1| Polyribonucleotide nucleotidyltransferase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 748
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 329/750 (43%), Positives = 451/750 (60%), Gaps = 60/750 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G +++ +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE++
Sbjct: 8 EIDWGGKKLTLETGQVARQADGAVIATLGETVVLCAVTAAKTVKEGQDFFPLTVHYQEKY 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
SAAGR GGFFKRE + E L+ RLIDRP+RP +GFY+ET +++ V+SYDG + PD
Sbjct: 68 SAAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNETLVIAQVMSYDGENEPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ALS VP I RVG +FI+NPT +++E S LDL++ + DA++
Sbjct: 128 ILAMIAASAALALSGVPFLGPIGAARVGYQDGEFILNPTLEQLEKSDLDLVVGATRDAVM 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + L EE+++ AV ++++ + + L E K + + + L VE
Sbjct: 188 MVESEANELPEEVMLNAVSFAHESLQPVIKAIINLAEQAAK-EPWELVSYDDSALAAKVE 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+ + K ++ K R ALS
Sbjct: 247 ELCYDNFDKAYRLTRKAERVDALSK----------------------------------- 271
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+ V+D E D K + +K + K++ +K +R I++ GRR DG
Sbjct: 272 --AKAVLDEAFPEADPTEKLRIQK-------------LAKKLEAKIVRTAILKEGRRIDG 316
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI S+ G LPR HGSALFTRGETQ+L TLG Q ID L + +RF
Sbjct: 317 RDLKTVRPIRSQVGFLPRTHGSALFTRGETQALVSTTLGTADAEQMIDGL-TGLHYERFM 375
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS DFPYTIRV S ITESNGS
Sbjct: 376 LHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKADFPYTIRVLSDITESNGS 435
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCGGCLAL DAGVP+ ++G+AMG++L+ D F ILSDI G ED GDM
Sbjct: 436 SSMATVCGGCLALMDAGVPLTRPVSGIAMGLILEKDGFA------ILSDIMGDEDHLGDM 489
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E GIT+ QMDIKV GIT +M+KAL+QAK GR HIL EM K + +S
Sbjct: 490 DFKVAGTEKGITSLQMDIKVAGITEEIMQKALEQAKGGRAHILGEMSKALGEVRSEISNL 549
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M V +KI +IG+GGK ++ I+ TG + +D EDDGTV++++ D +++E ++
Sbjct: 550 APRIETMSVPKDKIRDVIGTGGKVIREIVATTGAK-VDIEDDGTVRLSSSDPANIEAARE 608
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I+ + P VG IY N ++ +I +G FV GR+GL H+SE+ + + K DV+ G
Sbjct: 609 WINGIVEEPEVGKIY-NGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNKVSDVLSEG 667
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V VK++E++++G++RLS R + E AE
Sbjct: 668 QEVKVKVLEIDNRGKVRLSMRVVDQETGAE 697
>gi|398828034|ref|ZP_10586236.1| polyribonucleotide nucleotidyltransferase [Phyllobacterium sp.
YR531]
gi|398218752|gb|EJN05254.1| polyribonucleotide nucleotidyltransferase [Phyllobacterium sp.
YR531]
Length = 713
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 321/752 (42%), Positives = 450/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFADGYKNDTQVVLTVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +++ A A+ LS VP I G RVG + ++ +NPT EM +S LDL++AG+ DA+
Sbjct: 127 DIISLIGASAALTLSGVPFMGPIGGARVGYINGEYRLNPTVDEMPESSLDLVVAGTGDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L+E++++ AV G + + + + + L E+ K P+ + E
Sbjct: 187 LMVESEAKELAEDVMLGAVMFGHRSFQPVIDAIIKLAEVAAKEPRDFQADDVSAAE--AA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V ++A +L +I +K R A+ + + KV
Sbjct: 245 VLKVAETDLRAAYKITDKQDRYNAVDAAKAKV---------------------------- 276
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
H P+ + FS ++ VFK V +K +R I++ G R
Sbjct: 277 ----------------KAHFFPEGVEEPE--FSAEEIATVFKSVQAKIVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP+ FPYT+R S ITESN
Sbjct: 378 FMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPVLPAKEQFPYTLRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ ++F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLLRPVAGIAMGLILEGEKFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG+E+GITA QMDIK+ GIT +MK AL QAKDGR HIL EM K + L
Sbjct: 492 DMDFKVAGSENGITALQMDIKIDGITEEIMKVALAQAKDGRLHILGEMAKAITEGRSELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +E +
Sbjct: 552 EFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+ I ++ P VG+IY +K+ A +G FV R+GL HIS+L+S+ +AK DVVK
Sbjct: 611 RKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLASDRVAKTSDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VKL+ +++G++RLS + + E E
Sbjct: 670 EGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|359400098|ref|ZP_09193090.1| polyribonucleotide nucleotidyltransferase [Novosphingobium
pentaromativorans US6-1]
gi|357598524|gb|EHJ60250.1| polyribonucleotide nucleotidyltransferase [Novosphingobium
pentaromativorans US6-1]
Length = 761
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 316/753 (41%), Positives = 438/753 (58%), Gaps = 60/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSMEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKRE + E L RLIDRP+RP +GFY+E ++ VLSYDG
Sbjct: 66 KFSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINCIAQVLSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQE-MEDSQLDLLLAGSDD 269
PD +A+ AA A+ +S VP I RVG V ++ +NP + + D +LDL++A + D
Sbjct: 126 PDVVAMIAASAALTISGVPFMGPIGACRVGFVDGQYTLNPKQEAALADGRLDLVVAATGD 185
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E L+EE ++ AV D +++ N + L E K + ++
Sbjct: 186 AVMMVESEAKELNEEEMLGAVMFAHDECKKVVNLIIDLAEQAAKEPWEIDLSDNTADIKA 245
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
++E+ G+++ ++ +K R AL++ K
Sbjct: 246 KLKEVVGKDVAAAYKLTDKSARSNALNAARAKA--------------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+E D E V IK K+V ++ +R I++ G+R
Sbjct: 279 -----KEAFADAEPQTQMVAIK------------------TMKKVEAEIVRGAILKDGQR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D +RPI S G LPR HGSALFTRGETQ++ TLG K Q ID LE
Sbjct: 316 IDGRKLDQVRPIESMVGFLPRTHGSALFTRGETQTICTTTLGTKDSEQMIDGLEGLS-YS 374
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ DFPYTIRV S +TES
Sbjct: 375 AFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDFPYTIRVLSDVTES 434
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCGGCL++ DAGVPI+ ++G+AMG++L+ DEF +LSDI G ED
Sbjct: 435 NGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDEFA------VLSDILGDEDHL 488
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E+GIT QMDIK+ GIT +M KAL+QAK GR HIL EM K L
Sbjct: 489 GDMDFKVAGTENGITTMQMDIKIAGITKEIMGKALEQAKAGRAHILGEMTKALGSARTEL 548
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S HAP I +++ KI +IG+GGK ++ I+ ET + +D +D+G +KI++ DL +E
Sbjct: 549 SAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETCAK-VDIDDEGVIKISSSDLDQIEA 607
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I + VG IY ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 608 AKNWILGIVEEAEVGKIYTG-KVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVV 666
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++++G++RLS R + E E
Sbjct: 667 SEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEE 699
>gi|389690696|ref|ZP_10179589.1| polyribonucleotide nucleotidyltransferase [Microvirga sp. WSM3557]
gi|388588939|gb|EIM29228.1| polyribonucleotide nucleotidyltransferase [Microvirga sp. WSM3557]
Length = 725
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 328/744 (44%), Positives = 445/744 (59%), Gaps = 59/744 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ R++++ETG M RQA GAV T GET + +V A P DFFPL VNYQER AA
Sbjct: 11 WAGRKLVLETGKMARQADGAVVATYGETTVLATVVSAKEPKAGVDFFPLTVNYQERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD +A
Sbjct: 71 GRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVEGYKNDTQVVVTVLSHDLENDPDVVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP + RVG +G ++ +NP QEME S LDL++AG+ +A+LM+E
Sbjct: 131 MVAASAALTLSGVPFMGPVGAARVGYIGGQYKLNPPIQEMEQSALDLVVAGTSEAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHVEEI 334
L E++++ AV G + + + L E K P+ D E+ + V I
Sbjct: 191 SEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR--DYQPADVSEVEQAVLAI 248
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A +L + ++ K R A+ +++ KV+ L
Sbjct: 249 AEADLREAYKLTKKQDRYAAVDAVKAKVMDAL---------------------------- 280
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
V DGE F VK VFKE +K +R I++ G R DGR
Sbjct: 281 --VPADGEAK-----------------FDPEKVKAVFKEAQAKVVRWNILDTGTRIDGRD 321
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI S G+LPR HGSA+FTRGETQ+L V TLG + Q ID LE + + F L
Sbjct: 322 LKTVRPILSEVGVLPRTHGSAVFTRGETQALVVTTLGTGEDEQFIDELEGTRK-ETFLLH 380
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP ++FPYTIRV S ITESNGSSS
Sbjct: 381 YNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPPSHEFPYTIRVVSEITESNGSSS 440
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GDMDF
Sbjct: 441 MASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGDMDF 494
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG + GIT+ QMDIK+ GIT +M+ AL QAKDGR HILAEM K P L +HAP
Sbjct: 495 KVAGTDQGITSLQMDIKIAGITEEIMRVALDQAKDGRGHILAEMNKALTAPRAELGEHAP 554
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I M++ +KI +IGSGGK ++ I+E+TG + ID DDG +KI + D S++ + I
Sbjct: 555 RIETMQIPVDKIREVIGSGGKVIREIVEKTGAK-IDINDDGLIKIASADGKSIKAAYNWI 613
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
++ P V IY +K + +G FV R+GL HISEL+ N + K DVVK GD
Sbjct: 614 RSIVAEPEVNVIYDGTVVK-VMEFGAFVNFFGSRDGLVHISELAKNRVGKVTDVVKEGDK 672
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE 838
V VK + ++++G++RLS + + E
Sbjct: 673 VKVKFLGMDERGKVRLSMKVVNQE 696
>gi|319403623|emb|CBI77208.1| polyribonucleotide nucleotidyltransferase [Bartonella rochalimae
ATCC BAA-1498]
Length = 733
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 315/745 (42%), Positives = 453/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GA+ T GET++ +V A P +FFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKTPKPDQNFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+ KRE R + E L+ RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 NYAVGKIPGGYLKRESRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IA R+G ++I+NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + N + L E+ K P+ D I L K
Sbjct: 187 LMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPR--DFIPEDLSILEKD 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+ ++L + I +K R AL L+E+V+ ++ E
Sbjct: 245 MLEMVEQDLRDIYTITDKQKRHAALDFLKEEVINKFTQ--------------------ET 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E E F+ + VFK++ +K +R+ I++ G+R
Sbjct: 285 EKNCE--------------------------FNTDQIATVFKQLQAKIVRQNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L + TLG + Q ID+L + +
Sbjct: 319 DGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE+GRIG+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + +F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGKQFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALARARSELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IG+GGK ++ I+E+TG + I+ EDDGT+KI + DL ++E +
Sbjct: 552 EFSPRIEMMNIPVDKIRDVIGAGGKVIREIVEKTGAK-INIEDDGTIKIASSDLKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K IA +G FV R+GL HIS+L+ +AK D+VK
Sbjct: 611 KNWILSIVDEPEVGAIYQGTVVK-IAEFGAFVNFFGSRDGLVHISQLAVERVAKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|261868717|ref|YP_003256639.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769978|ref|ZP_11484593.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416076363|ref|ZP_11585444.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416081081|ref|ZP_11586355.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444337102|ref|ZP_21151126.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|261414049|gb|ACX83420.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004967|gb|EGY45457.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348011104|gb|EGY51089.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348657011|gb|EGY74608.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443547571|gb|ELT57042.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 743
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 314/758 (41%), Positives = 447/758 (58%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 36 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 95
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 96 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTAL 275
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + + +++ V+ ++
Sbjct: 276 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITA------------------- 316
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDEEV SE + +F + S+ +R RI+ G
Sbjct: 317 -----EDEEV-------------------------SEGKIIDIFTALESQIVRGRIIAGE 346
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 347 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 405
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 406 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 465
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 466 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 519
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 520 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 579
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 580 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 638
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG Y+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 639 QDVMARIEDITAEVEVGATYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 697
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ D P
Sbjct: 698 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQDTVQQP 735
>gi|343518066|ref|ZP_08755062.1| polyribonucleotide nucleotidyltransferase [Haemophilus pittmaniae
HK 85]
gi|343394917|gb|EGV07464.1| polyribonucleotide nucleotidyltransferase [Haemophilus pittmaniae
HK 85]
Length = 710
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 315/756 (41%), Positives = 445/756 (58%), Gaps = 60/756 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF +E QI++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGVARVGFINDQFVLNPTMAEQKQSRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D LSEE ++ AV G + + +K GKP+ T +L
Sbjct: 182 DKAVLMVESEADVLSEEQMLSAVVFGHQQQQVVVEAIKEFAREAGKPRWDWTAPAVDTDL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLT-ILSENGYVSKDETVGIVETIPD 386
V+ IA L +I K R + + +++ V+ I +EN VS+ + V I
Sbjct: 242 INKVKAIAEARLGDAYRITEKQSRYEQIDAIKADVIAQITAENEEVSEGKIVDI------ 295
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
F + S+ +R RI+ G
Sbjct: 296 --------------------------------------------FTALESQIVRGRIIAG 311
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ +D L +
Sbjct: 312 EPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQILDELTGER 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S I
Sbjct: 372 Q-DHFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEI 430
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G E
Sbjct: 431 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDKF------VVLSDILGDE 484
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QAK R HIL M + P P
Sbjct: 485 DHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALKQAKGARMHILGVMEQAIPAPR 544
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++
Sbjct: 545 AEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDNNA 603
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ A I +T G IY+ ++ +A +G FV I +EGL HIS+++ + K
Sbjct: 604 AKAVMARIDEITAEVEAGAIYKG-KVTRLADFGAFVAIIGNKEGLVHISQIAEERVEKVS 662
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D ++VG VDVK++E++ +G++RL+ + L P+ AE
Sbjct: 663 DYLQVGQEVDVKVVEIDRQGRIRLTMKELAPKQTAE 698
>gi|220922849|ref|YP_002498151.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
nodulans ORS 2060]
gi|254782728|sp|B8IGX3.1|PNP_METNO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219947456|gb|ACL57848.1| 3' exoribonuclease [Methylobacterium nodulans ORS 2060]
Length = 725
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 318/741 (42%), Positives = 446/741 (60%), Gaps = 59/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G R++++ETG + RQA GAV + GET + +V P DF PL VNYQER AA
Sbjct: 11 WGGRKLVLETGKVARQADGAVVASYGETTVLATVVSLKEPKPGIDFLPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD ++
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPDIVS 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP I RVG VG+++ +NPT QEME S LDL++AG++ A+LM+E
Sbjct: 131 MVAASAALTLSGVPFMGPIGAARVGYVGNQYKLNPTIQEMEGSSLDLVVAGTEAAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHVEEI 334
L E++++ AV G + + + L E K P+ L E+ K V EI
Sbjct: 191 SEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLS--EVEKAVLEI 248
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
+L + + K R A+ +++ KV+ L+
Sbjct: 249 GEADLREAYKKTVKQERYAAVDAVKAKVMAALAP-------------------------- 282
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
+EG+ +P++ VK FKEV +K +R I++ G R DGR
Sbjct: 283 ---------EEGEAKFEPET------------VKAAFKEVQAKVVRWNILDTGSRIDGRD 321
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI S G+LPRAHGSALFTRGETQ+L V TLG Q ID LE + + F L
Sbjct: 322 VRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYK-ETFLLH 380
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYTIRV S ITESNGSSS
Sbjct: 381 YNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAAHEFPYTIRVVSEITESNGSSS 440
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCG LAL DAGVP++ +AG+AMG++L+ + F +LSDI G ED GDMDF
Sbjct: 441 MATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGDMDF 494
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG +G+T+ QMDIK+ GIT +M+ AL QAKDGR HIL EM K L +HAP
Sbjct: 495 KVAGTSEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHILGEMAKALTAARPELGEHAP 554
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I M++ +KI +IG+GGK ++ I+E+TG + ID +D G +KI + D +++ + I
Sbjct: 555 RIETMQIPTDKIREVIGTGGKVIREIVEKTGAK-IDIQDTGVIKIASSDAKAIKAAYNWI 613
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
++ P G IY +K++ +G F+ ++GL HISEL+ +AK DVVK GD
Sbjct: 614 RSIVAEPEAGMIYDGTVVKTM-EFGAFINFFGAKDGLVHISELAPQRVAKVTDVVKEGDK 672
Query: 815 VDVKLIEVNDKGQLRLSRRAL 835
V VK + +++G++RLS + +
Sbjct: 673 VKVKFLGQDERGKIRLSMKVV 693
>gi|395778736|ref|ZP_10459248.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
Re6043vi]
gi|423714950|ref|ZP_17689174.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
F9251]
gi|395417944|gb|EJF84281.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
Re6043vi]
gi|395430434|gb|EJF96476.1| polyribonucleotide nucleotidyltransferase [Bartonella elizabethae
F9251]
Length = 731
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 321/752 (42%), Positives = 456/752 (60%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E LV RLIDRP+RP ++G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIAASAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGLQPVIDAIIKLAEVAAKDPR--DFVPEDLSDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++E+A + + K I +K R A+ +L+ +V + + IP E
Sbjct: 245 MQEMAEQGIRKAYTITDKQERYAAIDALKTEV-----------------VHKFIP---ET 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
ED+ + FS + VFK++ +K +R I++ RR
Sbjct: 285 EDDCQ--------------------------FSADQIATVFKQLQAKIVRGNILDTERRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDALTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAKDGR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILHEMGKALTSARTELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G F+ R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-ADFGAFINFFGSRDGLVHISQLASERVTKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VKL+ +++G++RLS + + E E
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|319406539|emb|CBI80181.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. 1-1C]
Length = 733
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 315/745 (42%), Positives = 454/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GA+ T GET++ +V A +P +FFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAILATYGETVVLATVVSAKIPKPDQNFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+ KRE R + E L+ RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 NYAVGKIPGGYLKRENRPSESETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IA R+G ++I+NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAIIASSAALTLSGIPFMGPIAAARIGYCNGQYILNPNIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + N + L E+ K P+ D I L K
Sbjct: 187 LMVESEAHELPEDVMLDAVMFGQKSFQPVINAIIKLAEVAAKEPR--DFIPEDLSILEKD 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ ++L V I +K R A+ L+E+V+ ++ E
Sbjct: 245 MLKMIEQDLRDVYTITDKQKRHAAIDLLKEEVINKFTQ--------------------ET 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E E F+ + VFK + +K +R+ I++ G+R
Sbjct: 285 EKNCE--------------------------FNTDQIATVFKHLQAKIVRQNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L + TLG + Q ID+L + +
Sbjct: 319 DGRNLSDVRSIQSEVGILPRTHGSALFTRGETQALVIATLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE+GRIG+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGEIGRIGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRTVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + ++F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLANPVAGIAMGLIKEGEQFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITSLQMDIKIDGITEEIMKIALAQAKDGRIHILNEMAKALARARSELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + DL ++E +
Sbjct: 552 EFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASSDLKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K IA +G FV R+GL HIS+L+ +AK D+VK
Sbjct: 611 KNWILSIVDEPEVGAIYQGTVVK-IAEFGAFVNFFGSRDGLVHISQLAVERVAKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|251793162|ref|YP_003007890.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
aphrophilus NJ8700]
gi|422336698|ref|ZP_16417671.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus F0387]
gi|247534557|gb|ACS97803.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Aggregatibacter
aphrophilus NJ8700]
gi|353346010|gb|EHB90297.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus F0387]
Length = 709
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/753 (41%), Positives = 446/753 (59%), Gaps = 58/753 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + ++ V+ +
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDVIKADVIAQFTA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDEEV EG + +D+ F + S+ +R RI+ G
Sbjct: 283 ----EDEEVA------EGKI----------------IDI---FTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P P
Sbjct: 487 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILSVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++++
Sbjct: 547 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAVQ 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I ++T G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 DVMARIEDITAEVEAGAIYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
++VG V VK++E++ +G++RL+ + L P+ +A
Sbjct: 665 LQVGQEVMVKVVEIDRQGRIRLTMKELAPKEEA 697
>gi|416052880|ref|ZP_11578515.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347991672|gb|EGY33135.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 754
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 448/758 (59%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 45 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 104
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 105 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 164
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 165 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 224
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 225 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTAL 284
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + +++ V+ ++
Sbjct: 285 INKVKALAEARLGDAYRITEKQSRYAQIDAIKADVIAQITA------------------- 325
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE+ E ++D +F + S+ +R RI+ G
Sbjct: 326 -EDEEISEGKIID-----------------------------IFTALESQIVRGRIIAGE 355
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 356 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 414
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 415 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLVEFPYVVRVVSEIT 474
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 475 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 528
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 529 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 588
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 589 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 647
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG IY+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 648 QDVMARIEDITAEVEVGAIYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 706
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ + + P
Sbjct: 707 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQNTVHQP 744
>gi|326388041|ref|ZP_08209645.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207542|gb|EGD58355.1| polynucleotide phosphorylase/polyadenylase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 763
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 319/779 (40%), Positives = 448/779 (57%), Gaps = 60/779 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ V+SYDG
Sbjct: 66 KFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA A+ +S VP I RVG ++ +NP ++ + +LDL++A +D A
Sbjct: 126 PDIVAMIAASAALTISGVPFLGPIGAARVGFKDGEYQLNPNMAQVAEGRLDLVVAATDTA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E L+E+ ++ AV R++ + L E K + ++
Sbjct: 186 VMMVESEAKELTEDEMLGAVMFAHAESRKVIGAIIELAEKAAKDPWEVDLTDNTADIKAK 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++ I G+++ ++ NK R AL++ +K SE
Sbjct: 246 LKSIVGDDIAAAYKLTNKSERANALNAARDKAKAAFSEE--------------------- 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
P+++ V +K + K V S +R I++ G+R
Sbjct: 285 --------------------SPQTQM--------VAIKTLKK-VESDIVRTAILKDGQRI 315
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G LPR HGSALFTRGETQ++ TLG K Q ID L+ +R
Sbjct: 316 DGRTVTQVRPIESIVGFLPRTHGSALFTRGETQTICTTTLGTKDAEQMIDGLDG-LTYQR 374
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS DFPYTIRV S +TESN
Sbjct: 375 FMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALNPVLPSKEDFPYTIRVLSDVTESN 434
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGGCL+L DAGVPI ++G+AMG++L+ D+F +LSDI G ED G
Sbjct: 435 GSSSMATVCGGCLSLMDAGVPILRPVSGIAMGLILEGDDF------TVLSDILGDEDHLG 488
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GIT+ QMDIKV GIT + + AL QAK GR HIL EM + LS
Sbjct: 489 DMDFKVAGTSEGITSLQMDIKVAGITEEIFRTALAQAKGGRAHILGEMTRALGEVRTELS 548
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP I + + KI +IG+GGK ++ I+ TG + +D +D+G +KI++ D++ +E +
Sbjct: 549 AHAPRIETISIDKSKIREVIGTGGKVIREIVATTGAK-VDIDDEGVIKISSADVAQIEAA 607
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I + P VG +Y N ++ +I +G FV GR+GL H+SE+ + + K DVVK
Sbjct: 608 KKWILGIVEEPEVGKVY-NGKVVNIVDFGAFVNFMGGRDGLVHVSEMKNERVEKPTDVVK 666
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLVGSPKP 869
G V VK++E++++G++RLS R + E AE + P +P + PKP
Sbjct: 667 EGQEVKVKVLEIDNRGKVRLSMRLVDQETGAEIEDTRAPR-EPREPRGDRGGDRRGPKP 724
>gi|435853455|ref|YP_007314774.1| polyribonucleotide nucleotidyltransferase [Halobacteroides halobius
DSM 5150]
gi|433669866|gb|AGB40681.1| polyribonucleotide nucleotidyltransferase [Halobacteroides halobius
DSM 5150]
Length = 705
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 459/748 (61%), Gaps = 55/748 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ G + +ETG + +QA+G+V V G+T++ + ++D P ++FPL VNY+ER
Sbjct: 7 MELGGSNLTIETGELAQQANGSVLVRYGDTVVLVTATMSD-PRPGINYFPLMVNYEERLY 65
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR D L RLIDRPLRP +GF H+ Q+++ VLS D + PD
Sbjct: 66 AVGKIPGGFIKREGRPSDAATLTARLIDRPLRPLFPEGFRHDVQVVATVLSVDSDNAPDI 125
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A A+A+S++P I GVRVGLV ++++NPT +M+++++DL +AG+++A++M
Sbjct: 126 AAMIGASAALAISDIPFEAPIGGVRVGLVDGEYMINPTIAQMKETKIDLTVAGTEEAVMM 185
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM-LDTIKLPPPELYKHVE 332
+E + +EE +I+A++ G ++EI K +V GK K ++ + PE+ + V+
Sbjct: 186 VEAGANEATEEEVIEAIEFGHQTIKEIVKLEKEMVAEIGKEKADVELEIIDRPEIEEEVK 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
+ G++L + LQ K K R K +S+++E ++ D ED D
Sbjct: 246 DYVGDDLKEALQTKVKAKRSKQISAVKEDTKKYFADK---------------YDDAEDLD 290
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E +EVV + ++ +R ++E G R DG
Sbjct: 291 EIKEVVSN-----------------------------TLDKIIKNVIRSLVIEEGTRIDG 321
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RPI S+ LLPRAHGS +FTRG+TQ++ V TLG Q +D LE + E KR+
Sbjct: 322 RDLDEVRPIWSKVDLLPRAHGSGVFTRGQTQAMTVATLGAVGDEQVLDGLE-EKESKRYM 380
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE + +P RREIGHGTL ERAL P++P+ ++FPYT+R+ S + SNGS
Sbjct: 381 HHYNFPPYSVGETNPLRSPGRREIGHGTLGERALRPMIPNSDEFPYTLRLVSEVLSSNGS 440
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+S AS+CG LAL DAGVPIK ++G+AMG++ DE IL+DI G ED +GDM
Sbjct: 441 TSQASICGSTLALMDAGVPIKAPVSGIAMGLIKADDEVA------ILTDIQGIEDHNGDM 494
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +DGITA Q+DIK+ GI+ ++ + L+QA+ GR HIL +ML+ P S++
Sbjct: 495 DFKVAGTKDGITALQLDIKIKGISKEILARGLEQARKGRLHILDKMLETIDQPRTEKSEY 554
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I +K+ +KI +IG GGK +K II+ETGV+ ID EDDGT+ I A+D +S ++++
Sbjct: 555 APAIMTLKIDEDKIKDVIGKGGKTIKGIIDETGVK-IDIEDDGTIYIAAEDQASGKEARK 613
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II NLT VG Y +K +G FVEI PG+EGL HISEL+ + K E++VK
Sbjct: 614 IIENLTKEIEVGQ-YHMGTVKRTTDFGAFVEIVPGKEGLLHISELADRHVKKVENIVKKD 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + VK+I+++D+G++ LSR+ L E +
Sbjct: 673 DELLVKVIDIDDRGRISLSRKQALEEQE 700
>gi|419846105|ref|ZP_14369362.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK2019]
gi|386414400|gb|EIJ28956.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK2019]
Length = 712
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/761 (41%), Positives = 447/761 (58%), Gaps = 60/761 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D S+ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDSSAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMARIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLP--EADAENPPVK 847
+ VG V VK++E++ +G++RL+ + L P E +AE+ P +
Sbjct: 665 LHVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAESAPAE 705
>gi|444345965|ref|ZP_21153963.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443542204|gb|ELT52563.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 752
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 314/758 (41%), Positives = 447/758 (58%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 45 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 104
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 105 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 164
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 165 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 224
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 225 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTAL 284
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + + +++ V+ ++
Sbjct: 285 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITA------------------- 325
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDEEV SE + +F + S+ +R RI+ G
Sbjct: 326 -----EDEEV-------------------------SEGKIIDIFTALESQIVRGRIIAGE 355
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 356 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 414
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 415 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 474
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 475 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 528
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 529 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 588
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 589 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 647
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG Y+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 648 QDVMARIEDITAEVEVGATYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 706
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ D P
Sbjct: 707 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQDTVQQP 744
>gi|387121413|ref|YP_006287296.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|416034324|ref|ZP_11573306.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429734664|ref|ZP_19268671.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|444334238|ref|ZP_21149846.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347998188|gb|EGY39126.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|385875905|gb|AFI87464.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429151510|gb|EKX94376.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|443550672|gb|ELT58855.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 743
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 447/758 (58%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 36 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 95
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 96 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTAL 275
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + + +++ V+ ++
Sbjct: 276 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITA------------------- 316
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE+ E ++D +F + S+ +R RI+ G
Sbjct: 317 -EDEEISEGKIID-----------------------------IFTALESQIVRGRIIAGE 346
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 347 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 405
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 406 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 465
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 466 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 519
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 520 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 579
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 580 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 638
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG Y+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 639 QDVMARIEDITAEVEVGATYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 697
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ D P
Sbjct: 698 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQDTVQQP 735
>gi|407972913|ref|ZP_11153826.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor indicus
C115]
gi|407431684|gb|EKF44355.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor indicus
C115]
Length = 718
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/752 (42%), Positives = 452/752 (60%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLVLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGFDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVDGYKNDTQVIITVLQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +++ AA A+ LS VP I RVG +G ++I+NP EME+++LDL++AG+ +A+
Sbjct: 127 DIVSMVAASAALTLSGVPFMGPIGAARVGYIGGEYILNPHVDEMEETKLDLVVAGTGEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ L EL
Sbjct: 187 LMVESEAQQLPEDVMLGAVMFGHKNFQPVIDAIIKLAEVAAKEPRDFSAADLS--ELEGE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ +L +I +K R A+ + + KV L E
Sbjct: 245 MLKVVENDLRDAYKITDKQQRYDAVDAAKAKVKATF--------------------LPEG 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E+E + +S V VFK + +K +R I++ G R
Sbjct: 285 EEETK--------------------------WSTEQVNTVFKSLQAKIVRWNILDTGNRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ+L V TLG + Q ID+L + +
Sbjct: 319 DGRDLSTVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLTGTYK-ES 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ + FPYT+RV S ITESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPASDQFPYTLRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K L
Sbjct: 492 DMDFKVAGTDEGITSLQMDIKIDGITEEIMKIALEQAKGGRLHILGEMSKALAESRGELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+ I ++T P VG+IY +K+ A +G FV R+GL HIS+L+S +AK DVVK
Sbjct: 611 RKWIHSITAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLASERVAKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VKL+ +++G++RLS + + E E
Sbjct: 670 EGDKVFVKLMGFDERGKVRLSMKVVDQETGTE 701
>gi|415757846|ref|ZP_11481479.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416049988|ref|ZP_11576804.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416067609|ref|ZP_11582353.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|347990983|gb|EGY32497.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348001986|gb|EGY42709.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655342|gb|EGY70801.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 752
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 447/758 (58%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 45 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 104
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 105 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 164
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 165 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 224
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 225 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEVGKPRWDWVAPEPNTAL 284
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + + +++ V+ ++
Sbjct: 285 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITA------------------- 325
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE+ E ++D +F + S+ +R RI+ G
Sbjct: 326 -EDEEISEGKIID-----------------------------IFTALESQIVRGRIIAGE 355
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 356 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 414
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 415 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 474
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 475 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 528
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 529 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 588
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 589 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 647
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG Y+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 648 QDVMARIEDITAEVEVGATYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 706
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ D P
Sbjct: 707 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQDTVQQP 744
>gi|416106827|ref|ZP_11590076.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348006029|gb|EGY46495.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 743
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 314/758 (41%), Positives = 447/758 (58%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 36 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 95
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 96 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVVEAGKPRWDWVAPEPNTAL 275
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + + +++ V+ ++
Sbjct: 276 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITA------------------- 316
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDEEV SE + +F + S+ +R RI+ G
Sbjct: 317 -----EDEEV-------------------------SEGKIIDIFTALESQIVRGRIIAGE 346
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 347 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 405
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 406 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 465
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 466 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 519
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 520 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 579
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 580 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 638
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG Y+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 639 QDVMARIEDITAEVEVGATYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 697
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ D P
Sbjct: 698 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQDTVQQP 735
>gi|367471499|ref|ZP_09471106.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 285]
gi|365276190|emb|CCD83574.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 285]
Length = 718
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 442/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P + DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ VLS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVGASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ D + + K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPR--DVAIIDNSAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ IA ++L I K R A+ +++EKV+ G
Sbjct: 244 EMLGIAEQDLRTAYAIPIKQQRYAAVGAVKEKVMAYFFPEGQ------------------ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+PK + ++ V VFKE+ +K +R I++ G+R
Sbjct: 286 ---------------------EPK--------YDKLRVAAVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR A +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S +TES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEVTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA++GR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV R+GL HIS+L+ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGTRDGLVHISQLADKRVQKTTDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS +A+
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKAV 693
>gi|251772265|gb|EES52835.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrodiazotrophum]
Length = 709
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 318/755 (42%), Positives = 446/755 (59%), Gaps = 64/755 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+PV+V++ G + + +ETG M RQA GA + T+I + A +DF PL V+
Sbjct: 2 KPVTVEVAVGGKTVRIETGRMARQADGAAVLWVEGTVIIATAVAAKTVKPGTDFLPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREG+ + E+L RL+DRPLRP +GFY++TQ+++ V+S D
Sbjct: 62 YQERAYAAGKIPGGFFKREGKPSEREILNSRLVDRPLRPLFPEGFYYDTQVIASVVSADR 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
D +AV AA A+ +S++P + VRVG V +F++NP + E S LDL++AG+
Sbjct: 122 SGLTDVMAVVAASTALTISDIPFDDPLGAVRVGYVDGQFVINPDIEAQERSSLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP--- 324
DAI+M+EG D +SEE+ ++A++ A + I + L + GK K LP
Sbjct: 182 ADAIMMVEGKADEVSEELFLEAIRTAHAACQPIIAAQRELQKKIGKSKR----ALPQVPV 237
Query: 325 -PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
PEL + + E L +L + +K R + S + + L G+
Sbjct: 238 RPELMEKIRSGGREPLSGILVVSDKKVREEKTSEIRSNLAKELFPEGF------------ 285
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ PM E + F E+ + LR +
Sbjct: 286 ---------------------------------ADPM--QEKEFSNGFHELERELLRAMV 310
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
++ G R+DGR IRPI+ G+LPR HGSALFTRGETQSL+V TLG QRID+LE
Sbjct: 311 LDRGIRADGRSTTEIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDSLE 370
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ KRF L Y+FP SVGEV + P RREIGHG LAERAL PVLPS +DFPY+IR+
Sbjct: 371 GESH-KRFMLHYNFPAFSVGEVKPMRGPGRREIGHGNLAERALIPVLPSKDDFPYSIRLV 429
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S I ESNGS+SMA+VCGG LA+ DAG+PIK +AG+AMG++ + D ILSDI
Sbjct: 430 SDILESNGSTSMATVCGGTLAMMDAGIPIKAPVAGIAMGLIKEGDRIA------ILSDIL 483
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKV G + G+TA QMDIK+ GITL +MKKAL+QA+ GR HI+ +M + P
Sbjct: 484 GIEDHLGDMDFKVTGTDIGVTAVQMDIKIKGITLEIMKKALEQARVGRIHIMGKMKEALP 543
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+ +S +AP I +++K +KI +IG GGK ++SI E TG + I+ ED G + + + D
Sbjct: 544 SVRSQMSPYAPRIMTIQIKQDKIREVIGPGGKMIRSITERTGAK-IEIEDSGVIHVASAD 602
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ +K+ II + VG IY ++K++A YG FVEI PG GLCH+S+L +
Sbjct: 603 EEAAKKAIEIIHQIVAEAEVGKIYLG-KVKTVAEYGAFVEIMPGTTGLCHVSQLEPRRVE 661
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
K DVV GD + VK++EV+ +G++RLSR+ + E
Sbjct: 662 KVTDVVNEGDEIVVKVLEVDRQGKIRLSRKEAIAE 696
>gi|384439796|ref|YP_005654520.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
gi|359290929|gb|AEV16446.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
Length = 714
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 325/773 (42%), Positives = 457/773 (59%), Gaps = 69/773 (8%)
Query: 79 LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP 138
+ +A P+ PQ + R +++ETG +QASGAV V GET++ + ++ P E
Sbjct: 1 MPEATPNSPQAFRYETQVAGRPLVLETGKYAKQASGAVLVRYGETVVLATAQASETPIE- 59
Query: 139 SDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQI 198
+DF PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE Q+
Sbjct: 60 ADFLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQV 119
Query: 199 LSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDS 258
+ VLS D + PD L TAA A+ LS++P +A VRVGL+G + ++NPT QE+E+S
Sbjct: 120 IVTVLSADQKNPPDILGPTAASAALLLSDIPWEGPVAAVRVGLIGGQLVLNPTLQELEES 179
Query: 259 QLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLD 318
LDL++AGS +AILM+E + EE L+QA++ ++ I + +A+ GKPKM
Sbjct: 180 ALDLVVAGSREAILMVEAGAQEVDEETLVQALEFAHREMQPILDLQEAMARALGKPKMAW 239
Query: 319 TIKLPPPELYKHVEEIA------GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYV 372
T PPE E+ A L +VLQ +K R +AL + E +
Sbjct: 240 T----PPETLSEEEKEAFYRLAVARGLSQVLQTASKGERSRALEAFAEAL---------- 285
Query: 373 SKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFK 432
I+E +P K TP + + F
Sbjct: 286 -------ILEALP---------------------------KGEDGTPEEAKKPLYQSAFG 311
Query: 433 EVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGD 492
EV + LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 312 EVVRRELRRLVLEEGKRADGRGPRDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGT 371
Query: 493 KQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPS 552
+ Q ID+L DE ++F + Y+FPP S GEV R+ SRRE+GHG LA+RAL+ V+P
Sbjct: 372 GRDEQIIDDL-GIDETEKFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALKAVMPK 430
Query: 553 DNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGG 612
+ DFPYT+RV + ESNGSSSMA+VC GCLAL DAGVP+K +AGVAMG+V + +
Sbjct: 431 EADFPYTVRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGER--- 487
Query: 613 DGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRR 672
+IL+DI G EDA GDMDFKVAG+ G+TA QMD KVGG+ V+K+AL QAK+ R
Sbjct: 488 ---AVILTDILGLEDALGDMDFKVAGSRKGVTALQMDNKVGGLPREVLKEALLQAKEARL 544
Query: 673 HILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTE 732
IL M P P L HAP I +KV EKI L+IG GGK V++ +EE GVE +D E
Sbjct: 545 RILDLMESVLPGPRPELKPHAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDIE 602
Query: 733 DDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLC 792
+DGTV+I + D+ + +K+K + LTM VG++Y + I P+G F+ + PG EGL
Sbjct: 603 EDGTVRIYSSDMEAAQKAKKRVEELTMEAKVGEVYEGT-VTKITPFGAFISLFPGTEGLL 661
Query: 793 HISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ + + ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 662 HISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 710
>gi|418464891|ref|ZP_13035830.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756846|gb|EHK91003.1| polynucleotide phosphorylase/polyadenylase [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 745
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 448/758 (59%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 36 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 95
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 96 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTAL 275
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + +++ V+ ++
Sbjct: 276 INKVKALAEARLGDAYRITEKQFRYAQIDAIKADVIAQITA------------------- 316
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE+ E ++D +F + S+ +R RI+ G
Sbjct: 317 -EDEEISEGKIID-----------------------------IFTALESQIVRGRIIAGE 346
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 347 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 405
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 406 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 465
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 466 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 519
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 520 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 579
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 580 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 638
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG IY+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 639 QDVMARIEDITAEVEVGAIYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 697
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ + + P
Sbjct: 698 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQNTVHQP 735
>gi|409439767|ref|ZP_11266806.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium mesoamericanum
STM3625]
gi|408748604|emb|CCM77987.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium mesoamericanum
STM3625]
Length = 716
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 325/773 (42%), Positives = 454/773 (58%), Gaps = 67/773 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTHDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEVMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQPEDYSELES-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELRTAYKNTQKAERYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 --------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSAEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QAK GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAKGGRAHILGEMAKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAA 859
DVVK G V VKL+ +++G++RLS + + E P + D K+ AA
Sbjct: 665 DVVKEGQKVWVKLLGFDERGKVRLSMKVVDQATGQELPAAE--KSDKKKEEAA 715
>gi|257096719|sp|B3PXD7.2|PNP_RHIE6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 712
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 316/750 (42%), Positives = 447/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L E++++ AV G + + + + L E+ K P+ PE Y
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PEDYS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL + +I K R A+ +++ KV
Sbjct: 240 ALESEMLGLAEAELREAYKITQKADRYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|163867506|ref|YP_001608705.1| polynucleotide phosphorylase [Bartonella tribocorum CIP 105476]
gi|189037300|sp|A9IMR9.1|PNP_BART1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161017152|emb|CAK00710.1| polyribonucleotide nucleotidyltransferase [Bartonella tribocorum
CIP 105476]
Length = 731
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 315/745 (42%), Positives = 452/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E LV RLIDRP+RP ++G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHMDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPR--DFVPEDLSDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++E+A +++ K I +K R A+ +L+ E I + +
Sbjct: 245 MQEMAEQDIRKAYTITDKQERYAAIDALK---------------------TEIINKFMPE 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ED + FS + VFK++ +K +R I++ +R
Sbjct: 284 TEEDCQ-------------------------FSTDQIATVFKQLQAKIVRGNILDTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q ID L + +
Sbjct: 319 DGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDALTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAKDGR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMAKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I ++ + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVINIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G F+ R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-ADFGAFINFFGSRDGLVHISQLASERVTKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS +A+
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKAV 694
>gi|386833714|ref|YP_006239028.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. multocida str. 3480]
gi|385200414|gb|AFI45269.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. multocida str. 3480]
Length = 714
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/751 (41%), Positives = 444/751 (59%), Gaps = 55/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E QI++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 122 QICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + + +K GKP+ P L
Sbjct: 182 DKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L + +I K R + + +++ V I + ++
Sbjct: 242 IEKVKAIAEARLGEAYRITEKQARYEQIDAIKADV-----------------IAQITAEV 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED E VVD +F + S+ +R RI+ G
Sbjct: 285 AEGEDISEGKVVD-----------------------------IFTALESQIVRSRIIAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 316 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 375 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 489 HLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +S
Sbjct: 549 DISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNSA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I ++T G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 608 KEVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ VG V VK++E++ +G++RL+ + + P+
Sbjct: 667 YLAVGQEVTVKVVEIDRQGRIRLTMKEVAPK 697
>gi|395767092|ref|ZP_10447629.1| polyribonucleotide nucleotidyltransferase [Bartonella doshiae NCTC
12862]
gi|395414851|gb|EJF81288.1| polyribonucleotide nucleotidyltransferase [Bartonella doshiae NCTC
12862]
Length = 734
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 317/743 (42%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGKIPGGYFKRENRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IAG RVG ++I+NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGIPFMGPIAGARVGYCNGQYILNPNIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAHELPEDIMLGAVMFGHKGLQPVIDAIIKLAEVAAKDPR--DFVPEDLSDLEKS 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A + + K I +K R A+ +L+ E I + +
Sbjct: 245 MLEMAEQNIRKAYTITDKQERYAAIDALK---------------------TEIINKFMPE 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ED + D + VFK++ +K +R I++ G+R
Sbjct: 284 TEEDCKFTAD-------------------------QIATVFKKLQAKIVRWNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKEAFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ +++ F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKESERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL +M K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNQMAKALTSARTELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGVIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|85714171|ref|ZP_01045160.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
gi|85699297|gb|EAQ37165.1| polyribonucleotide nucleotidyltransferase [Nitrobacter sp. Nb-311A]
Length = 723
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 321/746 (43%), Positives = 442/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV + GET++ +V A P E DF PL V+YQE
Sbjct: 11 SVEIDWGGRPLKLETGKIARQADGAVIASYGETVVLATVVAAKTPREGVDFLPLTVDYQE 70
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 71 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFADGWRNETQVIVTVLSHDMEND 130
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP I RVG + D++++NPT EM D++L+L++AG+ DA
Sbjct: 131 PDVLAMVAASAALTLSGVPFKGPIGAARVGFMNDEYVLNPTLDEMVDTRLELVVAGTADA 190
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSE++++ AV G + + N + L E K P+ + I L K
Sbjct: 191 VLMVESEAKELSEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPREVAAID--NSALEK 248
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + ++L I K R A+ +EKVL
Sbjct: 249 EMLALIEQDLRAAYAIPVKQDRYAAVGKAKEKVLA------------------------- 283
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H P+ + + ++ V VFKE+ +K +R I++ G+R
Sbjct: 284 -------------------HYFPEGAEPK---YDKLRVAEVFKELEAKIVRWNILDTGKR 321
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I + G+LPRAHGSALFTRGETQ++ V TLG + Q ID+L S +
Sbjct: 322 IDGRDVKTVRAIVAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDSL-SGTYKE 380
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYTIRV S ITES
Sbjct: 381 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITES 440
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ + +LSDI G ED
Sbjct: 441 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYA------VLSDILGDEDHL 494
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L
Sbjct: 495 GDMDFKVAGTESGITSLQMDIKIAGITEEIMKVALAQAKDGRIHILGEMAKALTNARAEL 554
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 555 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASNDGEAMKA 613
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG +Y +K + +G FV ++GL HIS+L+ + K DVV
Sbjct: 614 AIKWIKSIASDPEVGQVYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAVGRVQKTSDVV 672
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 673 KEGDKVKVKLLGFDDRGKTRLSMKVV 698
>gi|373466883|ref|ZP_09558192.1| polyribonucleotide nucleotidyltransferase [Haemophilus sp. oral
taxon 851 str. F0397]
gi|371759647|gb|EHO48359.1| polyribonucleotide nucleotidyltransferase [Haemophilus sp. oral
taxon 851 str. F0397]
Length = 709
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 310/754 (41%), Positives = 445/754 (59%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D S+ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDNSAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMARIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLTPKQETE 698
>gi|322418695|ref|YP_004197918.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
gi|320125082|gb|ADW12642.1| polyribonucleotide nucleotidyltransferase [Geobacter sp. M18]
Length = 696
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 324/748 (43%), Positives = 438/748 (58%), Gaps = 67/748 (8%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
+ I +ETG + +QASGAV + G+T++ + E FFPL VNYQE+ A GR
Sbjct: 12 KTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYAGGRI 71
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
G FFKREGR D+E L CRLIDRP+RP +GF ++TQ+++ V+S D H P LA+
Sbjct: 72 PGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDHDPGILAMIG 131
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A+ +S+VP + IAGV+VG V FI NP+ ++ E S +++++A S DAILM+EG
Sbjct: 132 ASAALMVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDMEIVIAASKDAILMVEGSA 191
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELYKHVEEI 334
+SE L++A+ G+ AV+ I + LV K +P P +L V+ +
Sbjct: 192 SEVSENDLLEAIFFGKQAVQGILAAQEELVAKVAPVKR----NIPAPVVNTDLKARVDAL 247
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EE+ ++IK K+ R A+ ++ K + L+E
Sbjct: 248 AKEEMRGAVRIKTKVERHDAIDAITVKTVAALAEEF------------------------ 283
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EG SE DVK +E+ +R I++ G R DGR
Sbjct: 284 ----------EG----------------SEKDVKAFIEELEYDLVREHIIKDGERIDGRD 317
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
IR I++ GLLPRAHGSALFTRGETQS+ TLG QRID+L D K+F L
Sbjct: 318 TKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSR-KKFLLH 376
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGE AP RREIGHG LAERAL+ VLP +DFPYTIR+ S ITESNGSSS
Sbjct: 377 YNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIRIVSDITESNGSSS 436
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCGG L++ DAG+PIK +AG+AMG++ + D+F ILSDI G ED GDMDF
Sbjct: 437 MATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFA------ILSDILGDEDHLGDMDF 490
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG +G+TA QMDIK+GG+T +M AL QAK GR HIL EM K LS AP
Sbjct: 491 KVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKTIATSRGDLSAFAP 550
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I + VK +KI +IGSGGK ++S+ E TGV AID +D G + I + + + + + +I
Sbjct: 551 RITTIWVKVDKIRDVIGSGGKNIRSVTEATGV-AIDIDDTGKINIASTNKEACDLAIKMI 609
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
NLT G +Y +K I +G FVEI PG +GL H+SEL + + D++K GD
Sbjct: 610 RNLTAEAEEGKLYMGT-VKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVSDILKEGDK 668
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADAE 842
V VK I ++ +G+++LSR+ L + E
Sbjct: 669 VLVKCIGIDKQGKIKLSRKEALGQTFTE 696
>gi|15602979|ref|NP_246051.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Pm70]
gi|378773733|ref|YP_005175976.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
36950]
gi|383309735|ref|YP_005362545.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. HN06]
gi|417853812|ref|ZP_12499158.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|81636811|sp|Q9CLU1.1|PNP_PASMU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|12721458|gb|AAK03198.1| Pnp [Pasteurella multocida subsp. multocida str. Pm70]
gi|338218996|gb|EGP04715.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. Anand1_goat]
gi|356596281|gb|AET15007.1| polyribonucleotide nucleotidyltransferase [Pasteurella multocida
36950]
gi|380871007|gb|AFF23374.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. HN06]
Length = 714
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 311/751 (41%), Positives = 444/751 (59%), Gaps = 55/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E QI++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 122 QICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + + +K GKP+ P L
Sbjct: 182 DKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L + +I K R + + +++ V I + ++
Sbjct: 242 IEKVKAIAEARLGEAYRITEKQARYEQIDAIKADV-----------------IAQITAEV 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED E +VD +F + S+ +R RI+ G
Sbjct: 285 AEGEDISEGKIVD-----------------------------IFTALESQIVRSRIIAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 316 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 375 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 489 HLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +S
Sbjct: 549 DISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNSA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I ++T G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 608 KEVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ VG V VK++E++ +G++RL+ + + P+
Sbjct: 667 YLAVGQEVTVKVVEIDRQGRIRLTMKEVAPK 697
>gi|440224993|ref|YP_007332084.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici CIAT
899]
gi|440036504|gb|AGB69538.1| polyribonucleotide nucleotidyltransferase [Rhizobium tropici CIAT
899]
Length = 732
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 317/750 (42%), Positives = 446/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 26 TVEIEWAGRPLKLETGKIARQADGAVVATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 85
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 86 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 145
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 146 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTQDA 205
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L E++++ AV G + + + + L E+ K P+ PE Y
Sbjct: 206 VLMVESEAKELPEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQ------PEDYS 259
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E+ +A EL +I K R A+ +++ KV
Sbjct: 260 ELEKEMLGLAEAELRNAYKITQKADRYAAVDAVKAKV----------------------- 296
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 297 ---------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILD 332
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 333 TSSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 392
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S
Sbjct: 393 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 451
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 452 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 505
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 506 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMSKAITES 565
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 566 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 624
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 625 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 683
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 684 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 713
>gi|395791955|ref|ZP_10471394.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis Pm136co]
gi|423714006|ref|ZP_17688265.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395421153|gb|EJF87409.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395432874|gb|EJF98848.1| polyribonucleotide nucleotidyltransferase [Bartonella vinsonii
subsp. arupensis Pm136co]
Length = 711
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 322/760 (42%), Positives = 455/760 (59%), Gaps = 61/760 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKTPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E LV RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPTENETLVSRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAHELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPR--DFVPEDLSDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A +++ K I +K R A+ +L+ E I + +
Sbjct: 245 MLEMAEQDIRKAYTITDKQERYAAIDALK---------------------TEVINKFMPE 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
EDED + FS + VFK++ +K +R I++ +R
Sbjct: 284 EDEDCK-------------------------FSTDQIATVFKQLQAKIVRWNILDTEKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL QAK+GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALDQAKEGRIHILNEMAKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIPVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE---NPPVK 847
GD V VKL+ +++G++RLS + + + E + PVK
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKIIDQQTGKEITSDKPVK 709
>gi|421263866|ref|ZP_15714884.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. P52VAC]
gi|401688993|gb|EJS84505.1| polynucleotide phosphorylase/polyadenylase [Pasteurella multocida
subsp. multocida str. P52VAC]
Length = 714
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 311/753 (41%), Positives = 445/753 (59%), Gaps = 55/753 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E QI++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 122 QICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + + +K GKP+ P L
Sbjct: 182 DKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L + +I K R + + +++ V I + ++
Sbjct: 242 IEKVKAIAEARLGEAYRITEKQARYEQIDAIKADV-----------------IAQITAEV 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED E +VD +F + S+ +R RI+ G
Sbjct: 285 AEGEDISEGKIVD-----------------------------IFTTLESQIVRSRIIAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 316 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 375 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTFAEFPYVVRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 489 HLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +S
Sbjct: 549 DISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNSA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I ++T G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 608 KEVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
+ VG V VK++E++ +G++RL+ + + P+ +
Sbjct: 667 YLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 699
>gi|418299092|ref|ZP_12910927.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens CCNWGS0286]
gi|355535386|gb|EHH04674.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens CCNWGS0286]
Length = 715
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 315/750 (42%), Positives = 448/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+EE+++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV
Sbjct: 240 ALENEMLALAEAELRDAYKITEKAARYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ +S ++ VFK + +K +R +++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YSPEEIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|217976462|ref|YP_002360609.1| polyribonucleotide nucleotidyltransferase [Methylocella silvestris
BL2]
gi|254782729|sp|B8EP09.1|PNP_METSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217501838|gb|ACK49247.1| Polyribonucleotide nucleotidyltransferase [Methylocella silvestris
BL2]
Length = 714
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 324/742 (43%), Positives = 449/742 (60%), Gaps = 59/742 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ + R++ +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 8 ELDWAGRKLTLETGRIARQADGAVLATYGETTVLATVVSARTPKPGIDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ VLS+D + PD
Sbjct: 68 FAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYRNDTQVVVTVLSHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ A A+ +S +P + G RVG + +NPT E+++S LDL++AG+ DA+L
Sbjct: 128 ILALVATSAALTISGIPFMGPVGGARVGYINGALKLNPTVDELKESALDLVVAGTGDAVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSE ++++AV G + + + + L E K P+ L E+ V
Sbjct: 188 MVESEAKELSETLMLEAVMTGHRGFQPVIDAIIRLAEKAAKEPRELAVAD--KAEVEAAV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+IA EL + +I K R KA+ +++ KV L P
Sbjct: 246 RDIAEGELREAYKITAKQERYKAVDAVKAKVALAL-----------------FP------ 282
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
ED E P+ FS+ V F ++ +K +R I++ G R D
Sbjct: 283 -EDAE---------------PR--------FSKEKVAEAFHDLQAKVVRWNILDLGVRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q +D+LE + +RF
Sbjct: 319 GRDLKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK-ERF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ +FPYTIR+ S ITESNG
Sbjct: 378 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAAEFPYTIRIVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 438 SSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E+G+T+ QMDIKV GIT +MK AL QAK GR HIL EM K L +
Sbjct: 492 MDFKVAGTEEGVTSLQMDIKVAGITEEIMKVALDQAKGGRLHILGEMSKALTGARAELGE 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I +K+ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+ + D +S++ +
Sbjct: 552 FAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAK-INIEDDGTVKVASSDGNSIKAAI 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
A I ++ P VG IY +K + +G FV ++GL HIS+L+ +AK+ DVVK
Sbjct: 611 AWIKSIANDPEVGQIYEGTVVK-VVDFGAFVNFFGSKDGLVHISQLAKGRVAKSSDVVKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRR 833
G+ V VKL+ +D+G++RLS R
Sbjct: 670 GEKVKVKLLGFDDRGKVRLSMR 691
>gi|421594156|ref|ZP_16038617.1| polynucleotide phosphorylase/polyadenylase [Rhizobium sp. Pop5]
gi|403699753|gb|EJZ17106.1| polynucleotide phosphorylase/polyadenylase [Rhizobium sp. Pop5]
Length = 712
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/750 (42%), Positives = 448/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ PE Y
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PEDYS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL + +I K R A+ +++ KV
Sbjct: 240 ALESEMLGLAEGELREAYKITQKADRYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|350561994|ref|ZP_08930831.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780312|gb|EGZ34647.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 694
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 316/740 (42%), Positives = 439/740 (59%), Gaps = 57/740 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + ETG + RQA+GAV V +T++ +V DFFPL VNYQER AA
Sbjct: 9 YGNQTVTFETGGIARQATGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVNYQERTYAA 68
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR + E L RLIDRPLRP +GF HETQI++ V+S + PD +A
Sbjct: 69 GKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFTHETQIVATVMSINPEVDPDIVA 128
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S VP + I RVG ++++NPT E+ DSQLDL++AG+++A++M+E
Sbjct: 129 MLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGTENAVIMVE 188
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSE++++ AV G + ++ ++ L GKP T + V E+A
Sbjct: 189 SEASELSEDVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPQTDDSVDAQVAEVA 248
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
LV+ QI K R + L+SL V+ L+
Sbjct: 249 RNALVEAYQIAEKQARTERLNSLRADVVERLATG-------------------------- 282
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
DEG P + VK F E+ + +R RI++G R DGR
Sbjct: 283 --------DEG----APSAEA----------VKNAFHELEYRIVRDRILDGNPRIDGRDT 320
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI+ + G+LPRAHGSA+FTRGETQ+L V TLG + AQ ID +E + +RF L Y
Sbjct: 321 RSVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERR-ERFMLHY 379
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP GE G +G+P RREIGHG LA+R ++ V+P D+ FPY IRV S ITESNGSSSM
Sbjct: 380 NFPPYCTGETGMVGSPKRREIGHGRLAKRGVQAVVPRDDSFPYVIRVVSEITESNGSSSM 439
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCG LAL DAGVP+K +AG+AMG++ + D F +L+DI G ED GDMDFK
Sbjct: 440 ASVCGTSLALMDAGVPLKAPVAGIAMGLIKEADRFA------VLTDILGDEDHLGDMDFK 493
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG G+TA QMDIK+ GIT +M+KALQQA++GR HIL M + +S +AP
Sbjct: 494 VAGTRAGVTALQMDIKIDGITREIMEKALQQAREGRLHILERMGESISSHRTEMSSYAPR 553
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+++ PEKI +IG GG ++++ EETG +ID DDG VKI + D ++ E++K I
Sbjct: 554 FITLRINPEKIRDVIGKGGATIRALTEETGT-SIDISDDGVVKIASTDQAAGEEAKRRIE 612
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
LT VG +Y +K I +G FV I PGR+GL HIS++S+ + D + GD V
Sbjct: 613 ELTADVEVGRVYSGRVVK-IMDFGAFVSILPGRDGLVHISQISNERVENVTDFLNEGDSV 671
Query: 816 DVKLIEVNDKGQLRLSRRAL 835
VK++EV+ +G++RLS +A+
Sbjct: 672 TVKVLEVDKQGRIRLSMKAV 691
>gi|425063811|ref|ZP_18466936.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida X73]
gi|404382365|gb|EJZ78826.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida X73]
Length = 751
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/753 (41%), Positives = 445/753 (59%), Gaps = 55/753 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 39 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 98
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E QI++ V+S +
Sbjct: 99 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNP 158
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 159 QICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT 218
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + + +K GKP+ P L
Sbjct: 219 DKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTAL 278
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L + +I K R + + +++ V I + ++
Sbjct: 279 IEKVKAIAEARLGEAYRITEKQARYEQIDAIKADV-----------------IAQITAEV 321
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED E +VD +F + S+ +R RI+ G
Sbjct: 322 AEGEDISEGKIVD-----------------------------IFTALESQIVRSRIIAGE 352
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 353 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 411
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 412 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 471
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 472 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 525
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 526 HLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRA 585
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +S
Sbjct: 586 DISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNSA 644
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I ++T G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 645 KEVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSD 703
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
+ VG V VK++E++ +G++RL+ + + P+ +
Sbjct: 704 YLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 736
>gi|365886810|ref|ZP_09425710.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3809]
gi|365337639|emb|CCD98241.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. STM 3809]
Length = 719
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 322/746 (43%), Positives = 441/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P + DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSPRDGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ LS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDAWRNETQVIVTTLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDILAMVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ D + + K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKEPR--DVAIIDNSAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ IA ++L K I K R A+ +++EKV+ G
Sbjct: 244 EMLGIAEQDLRKAYAIPVKQERYAAVGAVKEKVMAHFFPEG------------------- 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+PK + ++ V VFKE+ +K +R I++ GRR
Sbjct: 285 --------------------AEPK--------YEKLRVADVFKELEAKIVRWNILDTGRR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDVKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S +TES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEVTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ + +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRYA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA++GR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKALTAARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV R+GL HIS+L+ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGTRDGLVHISQLADKRVQKTSDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|443632661|ref|ZP_21116840.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443347484|gb|ELS61542.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 705
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 319/743 (42%), Positives = 452/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + D+FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E + + EE +++A+ G + ++ + + +V GK K T+ EL + V+
Sbjct: 189 VEAGAEEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEITLYEVDEELSEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ + +N V+K EDE+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEV---------KNAVVAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S K+V EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KMVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSRYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|300113661|ref|YP_003760236.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
gi|299539598|gb|ADJ27915.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus watsonii
C-113]
Length = 695
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/747 (41%), Positives = 442/747 (59%), Gaps = 57/747 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ I +GDR +++ETG + RQASGAV V GET++ +V E DFFPL VNY
Sbjct: 3 PIKKVIEYGDRPLILETGCIARQASGAVVVRYGETVVLVTVVGMKEAVEGRDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L RLIDRPLRP K F +E Q+++ V+S D
Sbjct: 63 QERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFVNEVQVIATVISSDSE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ PD ++ A A+ LS +P + IA RVG + ++++NPT +ME+S LDL++AG++
Sbjct: 123 NDPDIPSLIGASAALTLSGIPFATPIAAARVGYIDGQYVLNPTLSQMEESALDLVVAGTE 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E L EE+++ +V G ++E+ ++ L E GKP + +L
Sbjct: 183 KAVLMVESEAQELPEEIMLGSVMFGHQEMQEVIQTIRELAEEAGKPAWDWQSPIEEEDLK 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ +I + + Q+++K R+ L+ L ++ L +P
Sbjct: 243 SAIRDIGEARVQEAYQVRSKQERQACLTELRNSIVGSL-----------------VP--- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
ED + +S V + + +R +I+ GG
Sbjct: 283 --EDNSQ--------------------------WSREQVLEAMGALEKRLVREQILAGGE 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR IRPIS GLLPR HGSALFTRGETQSL TLG ++ AQ ID +E +
Sbjct: 315 RIDGRDTTAIRPISITTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERR- 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+RF L Y+FPP VGE G +G+P RREIGHG LA+R+L V+P + FPY IRV S ITE
Sbjct: 374 ERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNAVVPDEESFPYVIRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG L+L DAGVPIK +AG+AMG++ + D F +LSDI G ED
Sbjct: 434 SNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEADRFA------VLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG E G+TA QMDIK+ GIT +M+ AL QA++GR HIL +M + P
Sbjct: 488 LGDMDFKVAGTEKGVTALQMDIKIDGITEEIMRTALTQAREGRFHILQKMNEIISTPRQE 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S++AP + + K+ PEKI +IG GG ++++ EETG ID DDGTVKI + D + +
Sbjct: 548 MSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGT-TIDIVDDGTVKIFSADKADGQ 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++K + + VG IY + + +G FV I PG++GL HIS++S+ + D
Sbjct: 607 EAKRRVEEIVSDVEVGKIYEG-RVSRLMDFGAFVTILPGKDGLLHISQISAERVKNVSDK 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ GD++ VK++EV+ +G++RLS +A+
Sbjct: 666 LSEGDIIRVKVLEVDKQGRVRLSVKAI 692
>gi|325577639|ref|ZP_08147914.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
gi|325160384|gb|EGC72510.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae ATCC 33392]
Length = 712
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/761 (40%), Positives = 447/761 (58%), Gaps = 60/761 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D S+ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDSSAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMVRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLP--EADAENPPVK 847
++VG V VK++E++ +G++RL+ + L P E +AE+ P +
Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAESAPAE 705
>gi|417839272|ref|ZP_12485465.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19107]
gi|341953842|gb|EGT80338.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19107]
Length = 709
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/754 (41%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTIRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMARIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|153004013|ref|YP_001378338.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp.
Fw109-5]
gi|187470964|sp|A7H9F8.1|PNP_ANADF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152027586|gb|ABS25354.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp.
Fw109-5]
Length = 722
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/773 (41%), Positives = 462/773 (59%), Gaps = 59/773 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ G ++IL+ETG + +QA G+V V G++I+ +V A E DFFPL V+Y
Sbjct: 3 PIQKTARVGAQEILLETGKVAKQAHGSVWVRMGDSIVLVTVVSAAEKKEGIDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QE+ AAGR G FF+REGR + E L R++DR RP +G+ +ETQI++ V+S+D
Sbjct: 63 QEKLFAAGRVPGSFFRREGRPTEKETLTSRIVDRSCRPLFAEGYPNETQIIATVISFDQE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ D LA+T A A+ LS++P + IAGVRVG V +F+ NPT + ++ LD+++A S
Sbjct: 123 NDTDVLALTGASAALHLSDIPFNGPIAGVRVGRVNGQFVANPTLAQRAEADLDVIMAASR 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCG-KPKMLDTIKLPPPE- 326
DAI+M+EG +SE++++ A+ GQ AVRE+ + AL + G KP+ PP+
Sbjct: 183 DAIVMVEGGAKEVSEQVMVDALLFGQAAVRELLDAQDALRKATGDKPRR----AFDPPKN 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ + E++ + K R LS +++++L L K+E G
Sbjct: 239 DVALREKVKALTWEKVKEAYARNEKHDRYGRLSEIKKELLQAL-------KEEAAG---- 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
++K + E ++K +++V +++R+ I
Sbjct: 288 -----------------------------DAQKLAAIALREKEIKGYYEDVKYEYMRKMI 318
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ RR GR IR I+S GLLPR HGS+LFTRGETQ+L TLG + QR++ L
Sbjct: 319 TDERRRIGGRGEADIRKITSEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEML- 377
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ KRF L Y+FPP SVGEV + +P RREIGHG LAERAL V+P ++ FPYT+R+
Sbjct: 378 TGMVFKRFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRQVMPPEDKFPYTVRIV 437
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + ++ ILSDI
Sbjct: 438 SDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA------ILSDIL 491
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKV G +GIT+ QMDIK+GG+T ++++AL QA DGR+HIL EM K
Sbjct: 492 GDEDHLGDMDFKVCGTAEGITSIQMDIKIGGVTREILERALAQAADGRKHILGEMAKAIA 551
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P S+S +AP I +K++PE+I IIG GGK +K I TG +I+ EDDG+V I +
Sbjct: 552 TPRESISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGT-SINIEDDGSVSIASPS 610
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+E + +I +LT +G Y ++ IA +G FVE+ PG +GL HISELS +
Sbjct: 611 QDKVEAAIKMIRSLTQEAEIGKTYLGT-VRKIAEFGAFVELFPGTDGLIHISELSDKRVK 669
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPT-GDPTK 855
DV+ G+ V VK+I V+ G++RLSR+ L EA + P T G+P K
Sbjct: 670 SVSDVLSEGEEVLVKVISVDRAGKIRLSRKEALAEAAGKKPEGAAETKGEPAK 722
>gi|399041724|ref|ZP_10736700.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF122]
gi|398059942|gb|EJL51780.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF122]
Length = 713
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 324/775 (41%), Positives = 456/775 (58%), Gaps = 71/775 (9%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESILDLVVAGTHDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQPEDYSELEG-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELRTAYKNTQKAERYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 --------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASD 861
DVVK G V VKL+ +++G++RLS + + E P D K+ AA++
Sbjct: 665 DVVKEGQKVWVKLLGFDERGKVRLSMKVVDQATGQEIP------ADKKKEEAAAE 713
>gi|345428773|ref|YP_004821889.1| polynucleotide phosphorylase [Haemophilus parainfluenzae T3T1]
gi|301154832|emb|CBW14295.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
parainfluenzae T3T1]
Length = 712
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/761 (40%), Positives = 447/761 (58%), Gaps = 60/761 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +E G + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLEIGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGTSAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D S+ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDSSAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMARIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLP--EADAENPPVK 847
++VG V VK++E++ +G++RL+ + L P E +AE+ PV+
Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAESAPVE 705
>gi|15887437|ref|NP_353118.1| polyribonucleotide nucleotidyltransferase [Agrobacterium fabrum
str. C58]
gi|187470963|sp|A9CKQ7.1|PNP_AGRT5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15154950|gb|AAK85903.1| polyribonucleotide nucleotidyltransferase [Agrobacterium fabrum
str. C58]
Length = 713
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 314/750 (41%), Positives = 447/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+EE+++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV
Sbjct: 240 ALENEMLGLAETELRTAYKITEKAARYAAVDAVKTKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ +S ++ VFK + +K +R +++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YSPEEIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASASGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|121602640|ref|YP_989507.1| polynucleotide phosphorylase/polyadenylase [Bartonella
bacilliformis KC583]
gi|421761309|ref|ZP_16198112.1| polynucleotide phosphorylase/polyadenylase [Bartonella
bacilliformis INS]
gi|187470938|sp|A1UU54.1|PNP_BARBK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120614817|gb|ABM45418.1| polyribonucleotide nucleotidyltransferase [Bartonella bacilliformis
KC583]
gi|411173093|gb|EKS43141.1| polynucleotide phosphorylase/polyadenylase [Bartonella
bacilliformis INS]
Length = 733
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/754 (41%), Positives = 455/754 (60%), Gaps = 58/754 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKRE R ++E L+ RLIDRP+RP + + ++TQ++ V+ +D + P
Sbjct: 67 TYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ LS +P IAG RVG +++NPT EM +S+LDL++AG+++A+
Sbjct: 127 DILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E LSEE+++ A+ GQ + + + + L E+ K P+ + I +L K
Sbjct: 187 LMVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPR--EFIPEDFSDLEKT 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ ++L K I +K R A+ +++ ++L+ + V+ + T + T
Sbjct: 245 MLKMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIAT------- 297
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
VFK + +K +R I++ G+R
Sbjct: 298 ---------------------------------------VFKRLQAKIVRWNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ+L V TLG + Q +D L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQYVDLLTGVCK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+ +P RREIGHG LA RA+ P+LP+ FPYTIRV S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTKEAFPYTIRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERF------VILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GIT+ QMDIK+ GIT +MK AL+QAKDGR HIL EM K LS
Sbjct: 492 DMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEMAKALTDARTELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + EKI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D S+E +
Sbjct: 552 EFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASPDTKSIETA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K+ I ++ P VG IY+ +K+ +G F+ +GL HIS+L+S +AK DVVK
Sbjct: 611 KSWIHSIVDEPEVGTIYQGTVVKT-TEFGAFINFFGSHDGLVHISQLASKRVAKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
GD V V+L+ +++G++RLS + + + E P
Sbjct: 670 EGDKVWVQLMGFDERGKIRLSMKVVDQQTGKEIP 703
>gi|425065982|ref|ZP_18469102.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida P1059]
gi|404382522|gb|EJZ78982.1| Polyribonucleotide nucleotidyltransferase [Pasteurella multocida
subsp. gallicida P1059]
Length = 751
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/753 (41%), Positives = 445/753 (59%), Gaps = 55/753 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 39 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVN 98
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E QI++ V+S +
Sbjct: 99 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNP 158
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 159 QICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGT 218
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + + +K GKP+ P L
Sbjct: 219 DKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFSAEAGKPRWDWVAPEPNTAL 278
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L + +I K R + + +++ V I + ++
Sbjct: 279 IEKVKAIAEARLGEAYRITEKQARYEQIDAIKADV-----------------IAQITAEV 321
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED E +VD +F + S+ +R RI+ G
Sbjct: 322 AEGEDISEGKIVD-----------------------------IFTALESQIVRSRIIAGE 352
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 353 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 411
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 412 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 471
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 472 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 525
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 526 HLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRA 585
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +S
Sbjct: 586 DISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNSA 644
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I ++T G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 645 KEVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSD 703
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
+ VG V VK++E++ +G++RL+ + + P+ +
Sbjct: 704 YLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQE 736
>gi|190889779|ref|YP_001976321.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CIAT
652]
gi|190695058|gb|ACE89143.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
CIAT 652]
Length = 706
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/749 (42%), Positives = 446/749 (59%), Gaps = 67/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 1 MEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 60
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 61 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNP 120
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA+
Sbjct: 121 DILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDAV 180
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ PE Y
Sbjct: 181 LMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PEDYSA 234
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E +A EL + +I K R A+ +++ KV
Sbjct: 235 LESEMLGLAEAELREAYKITQKADRYAAVDAVKAKV------------------------ 270
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 271 --------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILDT 307
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 308 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 367
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S I
Sbjct: 368 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEI 426
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 427 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 480
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 481 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRTHILGEMAKAITESR 540
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 541 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 599
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 600 IEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 658
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 659 DVVKEGDKVWVKLLGFDERGKVRLSMKVV 687
>gi|381401149|ref|ZP_09926065.1| polynucleotide phosphorylase/polyadenylase [Kingella kingae
PYKK081]
gi|380833867|gb|EIC13719.1| polynucleotide phosphorylase/polyadenylase [Kingella kingae
PYKK081]
Length = 708
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 318/751 (42%), Positives = 450/751 (59%), Gaps = 62/751 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLTVDYFERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V + +++NPT Q++ SQLDL++AG++ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVAGTEQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D L E++++ AV G + ++ + + L + P++ D K P +L V+E
Sbjct: 191 SEADILPEDVMLGAVVFGHEQMQTVITAINELAQEV-NPEVWDW-KAPEANTDLIAKVKE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I+G+ + + +I+ K R L DE VE
Sbjct: 249 ISGDLIAEAFKIRQKQARSAKL-------------------DEAWAAVEA---------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
V++ E D ++ ++K +FK + + +R +I+ G R DGR
Sbjct: 280 ---VLITEETDT----------------LAKNEIKGIFKNLEAAVVRGQILAGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTNILPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HILA+M P LS+HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQTAVAGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ MK+ P+KI +IG GG+ ++SI ETG E I+ DDG V I A + E +KA
Sbjct: 553 PRLYTMKINPDKIREVIGKGGETIRSITAETGTE-INIADDGVVTIAATIAEAGEAAKAR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V I PG++GL HIS+++ + D ++VG
Sbjct: 612 IEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHERVKNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
V VK +EV+D+G++RLS +ALLP+ + +
Sbjct: 672 QTVSVKALEVDDRGRVRLSMKALLPQPEQQQ 702
>gi|77165581|ref|YP_344106.1| polynucleotide phosphorylase/polyadenylase [Nitrosococcus oceani
ATCC 19707]
gi|254433639|ref|ZP_05047147.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
gi|123593842|sp|Q3J9C0.1|PNP_NITOC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|76883895|gb|ABA58576.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus oceani
ATCC 19707]
gi|207089972|gb|EDZ67243.1| 3' exoribonuclease family, domain 2 [Nitrosococcus oceani AFC27]
Length = 695
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 313/749 (41%), Positives = 445/749 (59%), Gaps = 61/749 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ I +GDR +++ETG + RQASGAV V GET++ +V +E DFFPL VNY
Sbjct: 3 PIKKVIEYGDRSLVLETGCIARQASGAVVVRYGETVVLVTVVGMKEAAEGRDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L RLIDRPLRP K F +E Q+++ V+S D
Sbjct: 63 QERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKNFINEVQVIATVISSDSE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ PD ++ A A+ALS +P + IA RVG + ++++NPT +ME S LDL++AG++
Sbjct: 123 NDPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGQYVLNPTLGQMEKSALDLVVAGTE 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E L EE+++ +V ++ + ++ L E GKP + +L
Sbjct: 183 KAVLMVESEAQELPEEIMLGSVMFAHQEMQVVIQAIRELAEEAGKPAWDWKPPIEEEDLK 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTIL--SENGYVSKDETVGIVETIPD 386
V+E+ + QI++K R+ +L+ L ++ L EN S+++ ++E I
Sbjct: 243 SAVQEVGEARAQEAYQIRSKQERQASLAELRNSIVESLVPEENSRWSREQ---VLEAIGA 299
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
L + +R +I+ G
Sbjct: 300 L-----------------------------------------------EKRLVREQILSG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR A IRPI+ GLLPR HGSALFTRGETQSL TLG ++ AQ ID +E +
Sbjct: 313 GERIDGRDATAIRPINISTGLLPRTHGSALFTRGETQSLVATTLGTERDAQVIDAIEGER 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+RF L Y+FPP VGE G +G+P RREIGHG LA+R+L V+P + FPY IRV S I
Sbjct: 373 R-ERFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRSLNGVVPDEESFPYVIRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG L+L DAGVPIK +AG+AMG++ + D F +LSDI G E
Sbjct: 432 TESNGSSSMATVCGTSLSLMDAGVPIKAPVAGIAMGLIKEKDRFA------VLSDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GITA QMDIK+ GIT +M+ AL QA++GR +IL +M + P
Sbjct: 486 DHLGDMDFKVAGTEKGITALQMDIKIDGITEEIMRTALSQAREGRFYILQKMNEIISTPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S++AP + + K+ PEKI +IG GG ++++ EETG ID DDGTVKI + D +
Sbjct: 546 QEMSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGT-TIDIVDDGTVKIFSADKAD 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++K + + VG IY + + +G FV I PG++GL HIS++S+ +
Sbjct: 605 GQEAKRRVEEIVSDVEVGKIYEG-RVSRLMDFGAFVTILPGKDGLLHISQISAERVKNVS 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
D + GD++ VK++EV+ +G++RLS +A+
Sbjct: 664 DKLSEGDVIRVKVLEVDKQGRVRLSVKAI 692
>gi|170743024|ref|YP_001771679.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
4-46]
gi|226702664|sp|B0UEX5.1|PNP_METS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|168197298|gb|ACA19245.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium sp.
4-46]
Length = 725
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 318/741 (42%), Positives = 443/741 (59%), Gaps = 59/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G R++++ETG + RQA GAV + GET + +V P DF PL VNYQER AA
Sbjct: 11 WGGRKLVLETGKVARQADGAVVASYGETTVLATVVSMKEPKPGIDFLPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD ++
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPDIVS 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP I RVG +G ++ +NPT QEME+S LDL++AG+D A+LM+E
Sbjct: 131 MVAASAALTLSGVPFMGPIGAARVGYLGGQYKLNPTVQEMEESSLDLVVAGTDAAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHVEEI 334
L E++++ AV G + + + L E K P+ L E+ K V EI
Sbjct: 191 SEAKELPEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFQPTDLT--EVEKAVLEI 248
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
+L + + K R A+ +++ KV+ L G
Sbjct: 249 GEADLREAYRKTVKQERYAAVDAVKAKVMAALVPEG------------------------ 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
G+ +P+ VK FKEV +K +R I++ G R DGR
Sbjct: 285 -----------GEAKFEPEK------------VKAAFKEVQAKVVRWNILDTGSRIDGRD 321
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI S G+LPRAHGSALFTRGETQ+L V TLG Q ID LE + + F L
Sbjct: 322 VRTVRPILSEVGVLPRAHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYK-ETFLLH 380
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP ++FPYT+RV S ITESNGSSS
Sbjct: 381 YNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPPAHEFPYTLRVVSEITESNGSSS 440
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCG LAL DAGVP++ +AG+AMG++L+ + + +LSDI G ED GDMDF
Sbjct: 441 MATVCGSSLALMDAGVPLRRPVAGIAMGLILEGERYA------VLSDILGDEDHLGDMDF 494
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E+G+T+ QMDIK+ GIT +M+ AL QAK+GR HIL EM K L +HAP
Sbjct: 495 KVAGTEEGVTSLQMDIKIAGITEEIMRVALDQAKEGRAHILGEMAKALTAARPELGEHAP 554
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I M++ +KI +IG+GGK ++ I+E+TG + ID +D G VKI + D +++ + I
Sbjct: 555 RIETMQIPTDKIREVIGTGGKVIREIVEKTGAK-IDIQDTGVVKIASSDGKAIKAAYNWI 613
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
++ P G IY +K++ +G FV ++GL HISEL+ +AK DVVK GD
Sbjct: 614 RSIVAEPEAGMIYDGTVVKTM-EFGAFVNFFGAKDGLVHISELAPQRVAKVTDVVKEGDK 672
Query: 815 VDVKLIEVNDKGQLRLSRRAL 835
V VK + +++G++RLS + +
Sbjct: 673 VKVKFLGQDERGKIRLSMKVV 693
>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|257096715|sp|B5YHN2.1|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 710
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/753 (42%), Positives = 464/753 (61%), Gaps = 52/753 (6%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
+ V++ ++++++TG +Q +G+V G+T + +V P E DF PL ++YQ
Sbjct: 1 MEVELEIKGKKLVLQTGIFAKQTNGSVLAKYGDTYVLCTVVAEKTPKEGLDFVPLTIDYQ 60
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ +AG+ GGFFKREG+ D E+LV RLIDRP+RP GF +ETQ ++ VLSY +
Sbjct: 61 EKAYSAGKIPGGFFKREGKPTDREILVSRLIDRPVRPLFPDGFNYETQGIASVLSYGDEN 120
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
D L++ A+ +S++P + +A VRVG+V ++FI+NP E E S L+L++AG+++
Sbjct: 121 IADILSIIGISSALTISDIPFNGPVAAVRVGMVEEEFILNPDNDEAEKSILNLVVAGTEE 180
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP-PPELY 328
A+ M+EG SEE L++A++ +++I K L ++ GKPK + I L E+
Sbjct: 181 AVTMVEGGAAECSEETLVEALKFAHTHIKKIIALQKKLQQLSGKPKR-EIISLNGDEEIQ 239
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
K + I G ++ L + K+ R++AL L + L L+ + K L
Sbjct: 240 KAILNIIGGKIENALFLPKKVERQQALDELLNECLQNLNTEEFRQK------------LY 287
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+ D+D +++ F +V KF+R IV+ G
Sbjct: 288 GNFDKD----------------------------ISLEITNAFDKVIKKFMRESIVKKGI 319
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R+DGR +D IRPI+ G+LPR HGSALFTRGETQ+L TLG + Q++D+LE +
Sbjct: 320 RADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKVDSLEGEI-F 378
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
K F L Y+F P SVGEV + AP RREIGHG LAERAL V+PS ++FPYTIRV S I E
Sbjct: 379 KTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAERALSYVIPSKDEFPYTIRVVSDILE 438
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG L+L DAGVPIK +AGVAMG++ + GD T ++L+DI G ED
Sbjct: 439 SNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKE-----GDKT-VVLTDILGMEDH 492
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG E GITAFQMD+K+ GI+ + KKAL+QAK R IL +M + P
Sbjct: 493 YGDMDFKVAGTEKGITAFQMDVKISGISYEIFKKALKQAKQARLFILKKMAETISEPKKE 552
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTED-DGTVKITAKDLSSL 747
LS +AP I+ ++VKPEKI IIG+GGK +K IIEETGV+ ID ED +G VKI + + S+
Sbjct: 553 LSLYAPRIYKIQVKPEKIRDIIGTGGKVIKGIIEETGVK-IDIEDKEGIVKIASSNESAA 611
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ II +T +G IY ++ I +G FVEI PG EGL HIS+++ + K +
Sbjct: 612 QKAIEIIKGITQEAELGRIYMG-KVTRIVDFGAFVEIMPGVEGLLHISQIADKRIQKVSE 670
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
V+K G+ + VK+IE+++ G++RLSR+ L E +
Sbjct: 671 VLKTGEQIPVKVIEIDELGRVRLSRKEALREIE 703
>gi|387771787|ref|ZP_10127944.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parahaemolyticus HK385]
gi|386908172|gb|EIJ72870.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parahaemolyticus HK385]
Length = 707
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 307/745 (41%), Positives = 443/745 (59%), Gaps = 58/745 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVRQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E LV RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKLSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A + +I K R + + +++ +V+ L+ +
Sbjct: 243 NKVKALAESRIGDAYRITEKQARYEQIDTIKAEVIATLT--------------------V 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE E ++D + + S+ +R RI+ G
Sbjct: 283 EDETLSEGAIID-----------------------------IITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILNVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + V IY+ ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 TVMARIEEIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITDERVERVADY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRR 833
+ VG V VK++E++ + ++RL+ +
Sbjct: 665 LSVGQEVMVKVVEIDRQNRIRLTMK 689
>gi|424897717|ref|ZP_18321291.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2297]
gi|393181944|gb|EJC81983.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2297]
Length = 712
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 320/749 (42%), Positives = 449/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSELEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + +I K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELREGYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 --------------------KAHFFPEGVE--PKYTAEV-IGAVFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMSKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|145632472|ref|ZP_01788206.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
gi|144986667|gb|EDJ93219.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
3655]
Length = 709
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDGNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|170747372|ref|YP_001753632.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
radiotolerans JCM 2831]
gi|226702663|sp|B1LZQ1.1|PNP_METRJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|170653894|gb|ACB22949.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
radiotolerans JCM 2831]
Length = 739
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 326/743 (43%), Positives = 442/743 (59%), Gaps = 63/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GDR++++ETG + RQA GAV T GET + +V A P DF PL VNYQER AA
Sbjct: 11 WGDRKLVLETGKVARQADGAVIATYGETSVLATVVAAKEPKPGIDFMPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP I+G+ ++TQ++ VL++D + PD +A
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFIEGWRNDTQVVVTVLTHDLENDPDIVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNP-TTQEMEDSQLDLLLAGSDDAILMI 274
+ AA A+ LS VP I G RVG + + +NP T+ E+S LDL++AG+ DA+LM+
Sbjct: 131 MVAASAALTLSGVPFMGPIGGARVGYINGGYRLNPLVTETKEESSLDLVVAGTQDAVLMV 190
Query: 275 EGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP-PELYKHVE 332
E LSE++++ AV G + + + L E K P+ K P ++ K V
Sbjct: 191 ESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR---DFKAPENADVEKAVL 247
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+ EL K R A+ +++ KV+ L G
Sbjct: 248 EVCEAELRAAYTKTVKQERYAAVDAVKAKVMAALCPEGAEK------------------- 288
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
F VK FKE SK +R I++ G R DG
Sbjct: 289 -----------------------------FPAEKVKAAFKEAQSKVVRWNILDSGARIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +R I S G+LPRAHGSALFTRGETQ+L V TLG + Q ID LE + +RF
Sbjct: 320 RDVKTVRSILSEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYK-ERFL 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP ++FPYTIRV S ITESNGS
Sbjct: 379 LHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GDM
Sbjct: 439 SSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG ++G+T+ QMDIK+ GIT +MK AL QAKDGR HILAEM K L ++
Sbjct: 493 DFKVAGTDEGVTSLQMDIKIAGITEEIMKIALAQAKDGRAHILAEMAKALTAARPELGEY 552
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M++ +KI +IG+GGK ++ I+E+TG + I+ ED G VKI + D +++ +
Sbjct: 553 APRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAK-INIEDTGVVKIASADGKAIKAAYN 611
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I ++ P VG IY +K + +G FV ++GL HISEL++ +AK +DVVK G
Sbjct: 612 WIRSIVAEPEVGVIYDGTIVKCM-EFGAFVNFFGAKDGLVHISELAAQRVAKVQDVVKEG 670
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
D V VK + +D+G++RLS + +
Sbjct: 671 DKVKVKFLGQDDRGKIRLSMKVV 693
>gi|148827370|ref|YP_001292123.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittGG]
gi|187610273|sp|A5UG34.1|PNP_HAEIG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148718612|gb|ABQ99739.1| polynucleotide phosphorylase [Haemophilus influenzae PittGG]
Length = 709
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/754 (40%), Positives = 446/754 (59%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I VRVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAVRVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ +E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEINEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|68248838|ref|YP_247950.1| polynucleotide phosphorylase [Haemophilus influenzae 86-028NP]
gi|145635136|ref|ZP_01790841.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
gi|81336747|sp|Q4QNV7.1|PNP_HAEI8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68057037|gb|AAX87290.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
86-028NP]
gi|145267557|gb|EDK07556.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittAA]
Length = 709
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + VK + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAVKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISESKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|398304210|ref|ZP_10507796.1| polynucleotide phosphorylase/polyadenylase [Bacillus vallismortis
DV1-F-3]
Length = 706
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 319/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + DKFI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDKFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEETMLEAIMFGHDEIKRLIAFQEEIVAAVGKEKSEIALYEIDEELSEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ + +N V+K EDE+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEV---------KNTVVAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S K+V EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KMVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG + G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILDSMLATLSESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D SS K+K I
Sbjct: 554 PKILTMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESSNHKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|188583695|ref|YP_001927140.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium populi
BJ001]
gi|226702662|sp|B1ZGS7.1|PNP_METPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|179347193|gb|ACB82605.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium populi
BJ001]
Length = 745
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/744 (43%), Positives = 441/744 (59%), Gaps = 65/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GDR++++ETG RQA GAV T GET + +V A P DF PL VNYQER AA
Sbjct: 11 WGDRKLVLETGKTARQADGAVVATYGETTVLATVVAAKEPKAGIDFMPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD ++
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPDIVS 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP I RVG + + +NP E+ +S LDL++AG+ DA+LM+E
Sbjct: 131 MVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVAGTQDAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE---LYKHV 331
LSE++++ AV G + + + L E K P+ PPE + K V
Sbjct: 191 SEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR-----DFSPPENADVEKAV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+I EL +I K R KA+ +++ KV+ L
Sbjct: 246 LDICESELRDAYKITVKQDRYKAVDAVKAKVVAALCPA---------------------- 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EG+ P+ VK FKE SK +R I++ G R D
Sbjct: 284 -------------EGEQKFSPEK------------VKAAFKEAQSKVVRWNILDTGSRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S G+LPRAHGS+LFTRGETQ+L V TLG + Q ID LE + +RF
Sbjct: 319 GRDVKTVRPIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYK-ERF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP ++FPYTIRV S ITESNG
Sbjct: 378 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 438 SSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG ++GIT+ QMDIK+ GIT +M+ AL QAKDGR HIL EM + L +
Sbjct: 492 MDFKVAGTDEGITSLQMDIKIAGITEEIMRVALAQAKDGRAHILGEMAQALTAARPELGE 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M++ +KI +IG+GGK ++ I+E+TG + I+ ED G VKI + D +++ +
Sbjct: 552 YAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAK-INIEDTGVVKIASSDGKAIKAAY 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P G IY +K I +G FV ++GL HISEL+ +AK DVVK
Sbjct: 611 NWIRSIVAEPEAGTIYDGTIVK-IMEFGAFVNFFGAKDGLVHISELAPQRVAKVGDVVKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G V VK + +++G++RLS + +
Sbjct: 670 GQKVKVKFLGADERGKIRLSMKVV 693
>gi|16078732|ref|NP_389551.1| polynucleotide phosphorylase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309547|ref|ZP_03591394.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221313871|ref|ZP_03595676.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221318794|ref|ZP_03600088.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323066|ref|ZP_03604360.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321315436|ref|YP_004207723.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|402775915|ref|YP_006629859.1| polynucleotide phosphorylase [Bacillus subtilis QB928]
gi|418033183|ref|ZP_12671660.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|428279266|ref|YP_005561001.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|430758907|ref|YP_007209628.1| Polynucleotide phosphorylase PnpA [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449094359|ref|YP_007426850.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis XF-1]
gi|452914057|ref|ZP_21962684.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis
MB73/2]
gi|1709698|sp|P50849.3|PNP_BACSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase;
AltName: Full=Vegetative protein 15; Short=VEG15
gi|1184680|gb|AAC43595.1| polynucleotide phosphorylase [Bacillus subtilis]
gi|2634041|emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484223|dbj|BAI85298.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. natto BEST195]
gi|320021710|gb|ADV96696.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis BSn5]
gi|351469331|gb|EHA29507.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. subtilis str. SC-8]
gi|402481096|gb|AFQ57605.1| Polynucleotide phosphorylase (PNPase) [Bacillus subtilis QB928]
gi|407959076|dbj|BAM52316.1| polynucleotide phosphorylase [Synechocystis sp. PCC 6803]
gi|407964653|dbj|BAM57892.1| polynucleotide phosphorylase [Bacillus subtilis BEST7003]
gi|430023427|gb|AGA24033.1| Polynucleotide phosphorylase PnpA [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|449028274|gb|AGE63513.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis XF-1]
gi|452116477|gb|EME06872.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis
MB73/2]
gi|1589234|prf||2210369A polynucleotide phosphorylase
Length = 705
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 319/743 (42%), Positives = 451/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + D+FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ + +N V+K EDE+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEV---------KNAVVAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSRYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D S +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESGNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|384175410|ref|YP_005556795.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349594634|gb|AEP90821.1| polyribonucleotide nucleotidyltransferase [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 705
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 319/743 (42%), Positives = 451/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + D+FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIILEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ + +N V+K EDE+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEV---------KNAVVAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSRYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D S +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESGNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|196231533|ref|ZP_03130391.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
Ellin428]
gi|196224386|gb|EDY18898.1| Polyribonucleotide nucleotidyltransferase [Chthoniobacter flavus
Ellin428]
Length = 716
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 310/751 (41%), Positives = 446/751 (59%), Gaps = 57/751 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V G I +ETG + + A GAVTV GETI++ S A E DFFPL V+Y+E
Sbjct: 5 NVTAHIGAHPITIETGKLAKLADGAVTVRSGETIVFISAVSATTVKEGQDFFPLTVDYRE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ +A G+ GG+FKREGR + E+L CR+ DRPLRP KG+ ++TQI+ +LS DG
Sbjct: 65 KAAAVGKFPGGYFKREGRPSEKEILTCRMTDRPLRPLFPKGYLYDTQIIGVLLSADGEVD 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L + A A+ +S++P + + VRVG V +FI NPT +M DS LDL+ G+
Sbjct: 125 PDILFINGASAALMVSDIPFAGPVGAVRVGRVNGQFIANPTHSQMADSDLDLVYVGNATD 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++MIEG D + EE I A+ Q V +I + L + GK K + EL +
Sbjct: 185 VIMIEGAGDEVPEEQFIAALHFAQTEVSKIVALQQELAQKVGKAKRQAALFTVKDELMEV 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+AG+ + + K+K+ R+KA+++L+++V + I+ P+
Sbjct: 245 AYAVAGDRIEAAIYNKSKVARQKAIAALKDEV--------------SAAIIAKYPEA--- 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
++ ++ F + K R I++ R
Sbjct: 288 --------------------------------TKFEISQAFDYLQKKAFRVSILDKQTRC 315
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IR +S+ GLLPR+HGSALF RGETQ++A+ TL AQ +D + KR
Sbjct: 316 DGRGLDQIRDLSAEVGLLPRSHGSALFQRGETQAVALATLAPADEAQELDGYTGGETTKR 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR G+P RREIGHG LAER++EPV+P FPY IRV S + ESN
Sbjct: 376 FILHYNFPPFSVGETGRTGSPGRREIGHGALAERSVEPVIPDVTKFPYAIRVSSEVMESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGT---PLILSDITGSED 627
GS+SMASVC G LAL DAGVP+K S+AG++ G+V EF DG +L+DI GSED
Sbjct: 436 GSTSMASVCSGVLALLDAGVPLKKSVAGISCGLVT---EFRADGQLDRYTMLTDIIGSED 492
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMD+K+ G DG+T FQ+D+K+ GI L +M++A+ + +D R +L M P
Sbjct: 493 HFGDMDWKLCGTRDGVTGFQLDLKLPGIPLKMMEEAIYRTRDARMRVLDVMDSALSQPRT 552
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LSK+AP I +++ P+KI LIIG GGK +K I+ ETG E I+ EDDG+V I + + SL
Sbjct: 553 ELSKYAPRIETIRINPDKIGLIIGPGGKTIKGIVAETGAE-INIEDDGSVHIYSNNGDSL 611
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++K II +T +VG++Y+ + +I +G FVE+ PG++G+ HISEL+ + + ED
Sbjct: 612 LRAKQIIEGMTKEISVGEMYQG-RVVTIKEFGCFVEVLPGKDGMVHISELADFRVNRVED 670
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VVK+GD++ VK I V++KG+++LSR+A + E
Sbjct: 671 VVKMGDVIWVKCIGVDEKGRVKLSRKAAMKE 701
>gi|386812420|ref|ZP_10099645.1| polyribonucleotide nucleotidyltransferase [planctomycete KSU-1]
gi|386404690|dbj|GAB62526.1| polyribonucleotide nucleotidyltransferase [planctomycete KSU-1]
Length = 703
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/751 (43%), Positives = 457/751 (60%), Gaps = 62/751 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G R + +ETG + +QA GA + G+TI+ T+V A +E +DFFPL V+Y+E+ AA
Sbjct: 10 IGKRILSIETGKIAKQADGAALIRYGDTIVLTTVVAAG-ENEDADFFPLIVDYREKTYAA 68
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + EVL RLIDRP+RP + + +E QI+S VLS D + PD A
Sbjct: 69 GKFPGGFFKREGKPTNKEVLTMRLIDRPIRPLFPETYLNEVQIMSMVLSADKENDPDIFA 128
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S +P VRVGLV +F++NPT E+ S +DL+++G+++A+ M+E
Sbjct: 129 MIGASAALSISSIPFHGPTGSVRVGLVDGEFVINPTHSELLMSSIDLVVSGTEEAVTMVE 188
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL-YKHVEEI 334
+ EE ++ A+ G ++EI K L+ C K K +PP ++ +EEI
Sbjct: 189 SSSKEVPEEQMVDAIMFGHTFIKEIVQLQKELLSKCRKEKQ----PIPPLKINMALLEEI 244
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
G+ ++L+ KN+ P + +E+ L +
Sbjct: 245 KGKYYTRILE-KNQTPGK------QERKLAL----------------------------- 268
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
E+ +H R+ P ++ ++K +F+ + + +R +I+ +R DGR
Sbjct: 269 ------NEILNQIIHEYCTDREDAP---TKREIKAIFERIETVVVRDQIIRENKRPDGRG 319
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
IRPI+ G+LPR HGSALFTRGETQ+L V TLG Q++D LE D+ K+F L
Sbjct: 320 VKDIRPITCEIGILPRTHGSALFTRGETQALVVTTLGTPTDEQKVDTLE-DEYSKKFMLD 378
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP VGEV + P RREIGHG LAERALE VLP N FPYT+RV S ITESNGSSS
Sbjct: 379 YNFPPFCVGEVKPLRGPGRREIGHGALAERALEAVLPPPNKFPYTVRVVSDITESNGSSS 438
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCGG L++ DAG+PI +AG+AMG+V + D+ ILSDI G+ED GDMDF
Sbjct: 439 MATVCGGTLSMMDAGIPIIAPVAGIAMGLVKEGDDV------RILSDILGTEDHLGDMDF 492
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT VM+ AL QAK+GR I+ E++K P +S +AP
Sbjct: 493 KVAGTEKGVTALQMDIKISGITQEVMQSALAQAKEGRLFIIKELIKVIEKPRADISVYAP 552
Query: 695 -LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
L+HI K+ PEKI ++IG GGK +K I EET + I+ EDDGTV I+A S +K+K
Sbjct: 553 KLVHI-KINPEKIGMVIGPGGKNIKKIQEETSAK-IEIEDDGTVIISAALTESAQKAKTW 610
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T VG +Y ++ S+ YG FVEI PG +GL HISELS +++ K EDVV+VG
Sbjct: 611 IERMTEEVQVGKVYTG-KVLSLKEYGAFVEIIPGHDGLVHISELSDSYVEKVEDVVQVGQ 669
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
+ +K+I ++D+ +++LSR+A L E P
Sbjct: 670 EIMIKVIGIDDQKRVKLSRKAALKEKGQPEP 700
>gi|416893567|ref|ZP_11924717.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus ATCC 33389]
gi|347813857|gb|EGY30510.1| polyribonucleotide nucleotidyltransferase [Aggregatibacter
aphrophilus ATCC 33389]
Length = 733
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/753 (41%), Positives = 446/753 (59%), Gaps = 58/753 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 27 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 86
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 87 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 146
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 147 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFINDQFVLNPTINEQKQSRLDLVVAGTD 206
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 207 KAVLMVESEAGILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLI 266
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ +S
Sbjct: 267 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQISA-------------------- 306
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDEEV EG + +D+ F + S+ +R RI+ G
Sbjct: 307 ----EDEEVA------EGKI----------------IDI---FTALESQIVRGRIIAGEP 337
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 338 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGERS 396
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 397 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEITE 456
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 457 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDEDH 510
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 511 LGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRAD 570
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++++
Sbjct: 571 ISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAVQ 629
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I ++T G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 630 DVMARIEDITAEVEAGAIYKG-KVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDY 688
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
++VG V VK++E++ +G++RL+ + L P+ +A
Sbjct: 689 LQVGQEVMVKVVEIDRQGRIRLTMKELAPKEEA 721
>gi|187610327|sp|Q1QS60.2|PNP_NITHX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 720
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 325/770 (42%), Positives = 459/770 (59%), Gaps = 59/770 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS P I RVG + D++++NPT EM D+QL+L++AG+ DA
Sbjct: 126 PDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E LSE++++ AV G R + A++E+
Sbjct: 186 VLMVESEAKELSEDIMLGAVMFGH---RHFQPVINAIIELA------------------- 223
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
E A +E +V Q + S+LE+++L ++ E P
Sbjct: 224 --EKAAKEPREVSQADD--------SALEKEMLGLIEG-------------ELRPAYAIA 260
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ + + V + H P+ ++ + ++ + VFK + +K +R I++ G+R
Sbjct: 261 DKQQRQNAVAAAKAKVIAHYFPEGQEPK---YDKLRIAAVFKHLEAKIVRWNILDTGKRI 317
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR A +R I + G+LPRAHGSALFTRGETQ++ V TLG + Q ID L S +
Sbjct: 318 DGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDAL-SGTYKET 376
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+ RREIGHG LA RA+ PVLP ++FPYTIRV S ITESN
Sbjct: 377 FLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITESN 436
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCG L+L DAGVP+K AG+AMG++L+ + +LSDI G ED G
Sbjct: 437 GSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYA------VLSDILGDEDHLG 490
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GI++ QMDIK+ GIT +MK AL QA++GR HIL EM K L
Sbjct: 491 DMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKALTNARAELG 550
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP I K+ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+ + D +++ +
Sbjct: 551 EYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-INIEDDGTVKVASNDGEAMKAA 609
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++ P VG IY +K + +G FV ++GL HIS+L++N + K+ D+VK
Sbjct: 610 IKWIKSIASDPEVGQIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAANRVQKSSDIVK 668
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEA--DAENPPVKLPTGDPTKDAA 858
GD V VKL+ +D+G+ RLS +A+ + D E K D ++AA
Sbjct: 669 EGDKVKVKLLGFDDRGKTRLSMKAVDQQTGEDLEAAGHKAEKADAPREAA 718
>gi|419801849|ref|ZP_14327052.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK262]
gi|385192216|gb|EIF39622.1| polyribonucleotide nucleotidyltransferase [Haemophilus
parainfluenzae HK262]
Length = 712
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 311/761 (40%), Positives = 447/761 (58%), Gaps = 60/761 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ ++ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADMIAQIT--------------------- 281
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
D E+ EG + VD+ F + S+ +R RI+ G
Sbjct: 282 ---------AADEEISEGKI----------------VDI---FTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D S+ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDSSAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMVRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLP--EADAENPPVK 847
++VG V VK++E++ +G++RL+ + L P E +AE+ P +
Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETEAESAPAE 705
>gi|386389873|ref|ZP_10074672.1| polyribonucleotide nucleotidyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385694418|gb|EIG25023.1| polyribonucleotide nucleotidyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 707
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 307/745 (41%), Positives = 445/745 (59%), Gaps = 58/745 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVRQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E LV RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSESETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKLSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A + +I K R + + +++ +V+ L+ ++DETV
Sbjct: 243 NKVKALAESRIGDAYRITEKQARYEQIDTIKAEVIATLT-----AEDETVS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++D + + S+ +R RI+ G
Sbjct: 289 ------EGAIID-----------------------------IITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILNVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + V +Y+ ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 AVMARIEEIVAEVEVNAVYKG-KVTRVVDFGAFVSILGGKEGLVHISQITDERVERVADY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRR 833
+ VG V VK++E++ + ++RL+ +
Sbjct: 665 LSVGQEVMVKVVEIDRQNRIRLTMK 689
>gi|423711015|ref|ZP_17685335.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
Sb944nv]
gi|395414929|gb|EJF81364.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
Sb944nv]
Length = 733
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 316/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ D I +L +
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPR--DFIPEDLSDLEEA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++A E++ K QI +K R A+ +L+ +V+ + +P++ ED
Sbjct: 245 MLKMAEEDIRKAYQITDKQERYAAIDALKTEVIN-----------------KFMPEMEED 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ +R
Sbjct: 288 -----------------------------CKFSADQIATVFKQLQAKIVRWNILDTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPNKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSARDELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ ED+GT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDNGTIKIASTDAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGVIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLTSERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|152979713|ref|YP_001345342.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
succinogenes 130Z]
gi|187470960|sp|A6VR10.1|PNP_ACTSZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150841436|gb|ABR75407.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
succinogenes 130Z]
Length = 707
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/753 (41%), Positives = 450/753 (59%), Gaps = 60/753 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ SV E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKEVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF +E QI++ V+S +
Sbjct: 63 QERSYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ALS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALALSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K LV+ GKP+ P L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKELVKEAGKPRWDWVAPEPDTALI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLT-ILSENGYVSKDETVGIVETIPDL 387
V+ IA L +I K R + + +++ V+ I +EN
Sbjct: 243 NQVKVIAESRLGDAYRITEKQVRYEQIDAIKADVIAQITAENE----------------- 285
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EV EG + VD+ F + S+ +R RI+ G
Sbjct: 286 --------------EVSEGKI----------------VDI---FTALESQIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV+TLG ++ AQ +D L + +
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVVTLGTERDAQILDELTGERQ 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE GR+G+P RREIGHG LA+R + V+PS ++FPY +RV S IT
Sbjct: 373 -DTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEEDKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 486 HLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIAAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S++AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 546 EISEYAPRIYTMKIDPKKIKDVIGKGGATIRTLTEETGT-SIDIDDDGTVKIAAIDGNAV 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I +T G +Y ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 605 KEVMARIEEITAEVEAGAVY-TGKVTRLADFGAFVAILGNKEGLVHISQIAEERVEKVSD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
++VG V VK++E++ +G++RL+ + ++ +A+
Sbjct: 664 YLQVGQDVQVKVVEIDRQGRIRLTMKDIVSKAE 696
>gi|417843177|ref|ZP_12489254.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21127]
gi|341950411|gb|EGT77000.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21127]
Length = 709
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITS-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|403530115|ref|YP_006664644.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
RM-11]
gi|403232187|gb|AFR25930.1| polynucleotide phosphorylase/polyadenylase [Bartonella quintana
RM-11]
Length = 733
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 316/743 (42%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F A GR GG+ KRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ YD + P
Sbjct: 67 FYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQYDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++I+NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ D I +L
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPR--DFIPEDLSDLETA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+ +++ K I +K R A+ L+ +++ N ++S+ E
Sbjct: 245 MLEMVEQDIRKAYTITDKQERSTAIDVLKTEII-----NKFMSETEE------------- 286
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ RR
Sbjct: 287 ----------------------------NCKFSADQIATVFKQLQAKIVRSNILDTKRRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ IAG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GITA QMDIK+ GIT +MK AL+QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTKNGITALQMDIKIDGITEEIMKIALEQAKDGRIHILNEMAKALTSARDELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ ED+GT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDNGTIKIASADARTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L++ + K +VVK
Sbjct: 611 KRWIHSIVDEPEVGGIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLTTERVTKTTNVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|240849876|ref|YP_002971264.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
gi|240266999|gb|ACS50587.1| polyribonucleotide nucleotidyltransferase [Bartonella grahamii
as4aup]
Length = 731
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 313/745 (42%), Positives = 451/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E LV RLIDRP+RP ++G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D + EL K
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPR--DFVPEDLSELEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++++A +++ K I +K R A+ +L+ ++L + +P+ ED
Sbjct: 245 MQKMAEQDIRKAYTITDKQERYAAIDALKTEILN-----------------KFMPETEED 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ +R
Sbjct: 288 -----------------------------CKFSADQIATVFKQLQAKIVRGNILDTQKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRFGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKAIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G F+ R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-AEFGAFINFFGSRDGLVHISQLASERVTKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|329123749|ref|ZP_08252309.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
gi|327469948|gb|EGF15413.1| polyribonucleotide nucleotidyltransferase [Haemophilus aegyptius
ATCC 11116]
Length = 714
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 309/754 (40%), Positives = 443/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 8 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 67
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 68 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 127
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 128 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 187
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 188 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLI 247
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 248 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 287
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 288 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 318
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 319 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 377
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS FPY +RV S ITE
Sbjct: 378 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRVVSEITE 437
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 438 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKF------VVLSDILGDEDH 491
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 492 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 551
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI IIG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 552 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 610
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 611 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDY 669
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 670 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 703
>gi|145631098|ref|ZP_01786873.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
gi|144983383|gb|EDJ90865.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
R3021]
Length = 709
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|261492523|ref|ZP_05989076.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496798|ref|ZP_05993172.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261307545|gb|EEY08874.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311682|gb|EEY12832.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 716
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 312/756 (41%), Positives = 451/756 (59%), Gaps = 60/756 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENLKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A L +I K R + + +++ +V+ L+ ++DETV
Sbjct: 243 NKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLT-----AEDETVS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++D + + S+ +R RI+ G
Sbjct: 289 ------EGTIID-----------------------------IITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + +LPR HGSALFTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EET +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNT-SIDIDDDGTVKIAATDGNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + V IY N ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 606 AVMARIEEIVAEVEVNQIY-NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL--LPEADAE 842
+ VG V VK++E++ +G++RL+ + + EA+AE
Sbjct: 665 LTVGQEVQVKVVEIDRQGRIRLTMKDINNTNEANAE 700
>gi|153008079|ref|YP_001369294.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
ATCC 49188]
gi|187610317|sp|A6WWW1.1|PNP_OCHA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|151559967|gb|ABS13465.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum anthropi
ATCC 49188]
Length = 713
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 323/752 (42%), Positives = 448/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP ++G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVEGYKNDTQVVLTVVQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I G RVG + ++++NP EM +S+LDL++AG+ DA+
Sbjct: 127 DVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E LSEE+++ AV GQ + + + + L E+ K P+ PE
Sbjct: 187 LMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQ------PE---- 236
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
LS LE K+L ++ + + T
Sbjct: 237 -----------------------DLSDLEAKMLAVVENDLRDAYKIT------------- 260
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E + V VD + H P+ + FS VFK + +K +R I++ G R
Sbjct: 261 EKQARYVAVDAAKAKAKAHFFPEGVEEPE--FSAEKFATVFKHLQAKIVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S GLLPR HGSALFTRGETQ++ V TLG + Q ID L + +
Sbjct: 319 DGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYK-ES 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RRE+GHG LA RA+ P+LP+ + FPYTIR S ITESN
Sbjct: 378 FMLHYNFPPYSVGETGRMGSPGRREVGHGKLAWRAIHPMLPAADQFPYTIRSVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K L
Sbjct: 492 DMDFKVAGTDNGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKALSTSREELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNGKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+S+ +AK DVVK
Sbjct: 611 KKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLASDRVAKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VKL+ +++G++RLS + + E E
Sbjct: 670 EGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|417858448|ref|ZP_12503505.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens F2]
gi|338824452|gb|EGP58419.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens F2]
Length = 709
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 313/749 (41%), Positives = 446/749 (59%), Gaps = 67/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 1 MEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQEK 60
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 61 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENNP 120
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS +P I G RVG + ++++NP EME+S LDL++AG+ DA+
Sbjct: 121 DVLSMVATSAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESTLDLVVAGTSDAV 180
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 181 LMVESEAKELNEDIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFE------PEDFSA 234
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E +A EL +I K R A+ +++ KV
Sbjct: 235 LENEMLALAEAELRDAYKITEKAARYTAVDAVKAKV------------------------ 270
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ +S ++ VFK + +K +R +++
Sbjct: 271 --------------------KAHFLPEEGEAK---YSPEEIGAVFKHLQAKIVRWNVLDT 307
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 308 KSRIDGRDLSTVRPIISEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 367
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 368 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEI 426
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G E
Sbjct: 427 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGDE 480
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 481 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITESR 540
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 541 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 599
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 600 IEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTS 658
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 659 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 687
>gi|240949645|ref|ZP_04753980.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
gi|240295903|gb|EER46579.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
NM305]
Length = 711
Score = 564 bits (1453), Expect = e-157, Method: Compositional matrix adjust.
Identities = 310/751 (41%), Positives = 450/751 (59%), Gaps = 58/751 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V +E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + ++F++NPTT E S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A L +I K R + + +++ V+ L+ ++DET+
Sbjct: 243 NKVKALAEVRLGDAYRITEKQARYEQIDAIKADVIAQLT-----AEDETIS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
G++ VD+ + S+ +R RI+ G
Sbjct: 289 -----------SGKI---------------------VDI---ITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSALFTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P +
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITSEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I + V IY+ ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 RVMERIEEIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITEARVERVADY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEA 839
+ VG V VK++E++ +G++RL+ + L EA
Sbjct: 665 LSVGQEVQVKVVEIDRQGRIRLTMKDLNNEA 695
>gi|395782581|ref|ZP_10462967.1| polyribonucleotide nucleotidyltransferase [Bartonella
rattimassiliensis 15908]
gi|395417318|gb|EJF83657.1| polyribonucleotide nucleotidyltransferase [Bartonella
rattimassiliensis 15908]
Length = 731
Score = 564 bits (1453), Expect = e-157, Method: Compositional matrix adjust.
Identities = 316/752 (42%), Positives = 451/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E LV RLIDRP+RP ++G+ ++TQI+ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSENETLVSRLIDRPIRPLFVEGYKNDTQIIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ + + + L E+ K P+ D I L K
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPR--DFIPEDLSNLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++E+A E++ + I +K R A+ +L+ E I + +
Sbjct: 245 MQEMAEEDIRRAYTITDKQERYAAIDALK---------------------TEIINKFMPE 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ED + VD + VFK++ +K +R I++ +R
Sbjct: 284 TEEDCKFSVD-------------------------QIATVFKQLQAKIVRGSILDTQKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q ID L + +
Sbjct: 319 DGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTSEDEQYIDALTGLYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+ +P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKSGRIHILNEMAKALTSARSELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G F+ R+GL HIS+L++ + K D+VK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-AEFGAFINFFGSRDGLVHISQLATERVTKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VKL+ +++G++RLS + + E E
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|335032810|ref|ZP_08526182.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium sp. ATCC
31749]
gi|333795486|gb|EGL66811.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium sp. ATCC
31749]
Length = 713
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 447/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV
Sbjct: 240 ALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ +S ++ VFK + +K +R +++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YSPEEIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASASGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|418407620|ref|ZP_12980937.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens 5A]
gi|358005606|gb|EHJ97931.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
tumefaciens 5A]
Length = 715
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 447/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV
Sbjct: 240 ALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ +S ++ VFK + +K +R +++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YSPEEIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASASGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|395780941|ref|ZP_10461385.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
085-0475]
gi|395416816|gb|EJF83178.1| polyribonucleotide nucleotidyltransferase [Bartonella washoensis
085-0475]
Length = 733
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 316/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ D I +L +
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPR--DFIPDDLSDLEEA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++A E++ K QI +K R A+ +L+ +V+ + +P++ ED
Sbjct: 245 MLKMAEEDIRKAYQITDKQERYAAIDALKTEVIN-----------------KFMPEMEED 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ +R
Sbjct: 288 -----------------------------CKFSADQIATVFKQLQAKIVRWNILDTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPNKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K + LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSARDELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ ED+GT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDNGTIKIASTDAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGVIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLTSERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|408788370|ref|ZP_11200091.1| polynucleotide phosphorylase/polyadenylase [Rhizobium lupini
HPC(L)]
gi|408485959|gb|EKJ94292.1| polynucleotide phosphorylase/polyadenylase [Rhizobium lupini
HPC(L)]
Length = 715
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/757 (41%), Positives = 451/757 (59%), Gaps = 67/757 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMIATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV +P
Sbjct: 240 ALENEMLALAEAELRDAYKITEKAARYAAVDAVKAKVKA-----------------HFLP 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
+ EG+ P+ ++ VFK + +K +R +++
Sbjct: 283 E------------------EGEAKYTPE------------EIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGAIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK GD V VKL+ +++G++RLS + + E+ E
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQESGKE 700
>gi|16272192|ref|NP_438401.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
Rd KW20]
gi|1172546|sp|P44584.1|PNP_HAEIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd KW20]
Length = 709
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEXSEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGVIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|378828391|ref|YP_005191123.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
HH103]
gi|365181443|emb|CCE98298.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
HH103]
Length = 717
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/749 (42%), Positives = 445/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +++ AA A+ LS +P I G RVG + ++++NP EME+S LDL++AG+ +A+
Sbjct: 127 DVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVAGTQEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ D PE +
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFD------PEDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA +EL +I K R A+ +++ KV +P+
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHF-----------------LPE 283
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+E+ E ++ VFK + +K +R I++
Sbjct: 284 GIENPAHSAE-----------------------------EIASVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP FPYT+RV S I
Sbjct: 375 K-ERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT+ QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|257464719|ref|ZP_05629090.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
gi|257450379|gb|EEV24422.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus minor
202]
Length = 711
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/751 (41%), Positives = 447/751 (59%), Gaps = 58/751 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + ++F++NPT E S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMSEQRLSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A + +I K R + + +++ +V+ L+ ++DETV
Sbjct: 243 NKVKALAEARIGDAYRITEKQARYEQIDAIKAEVIATLT-----AEDETV---------- 287
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
SE + + + S+ +R RI+ G
Sbjct: 288 ----------------------------------SEGKIIDIITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSALFTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P +
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I + V IY+ ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 RVMERIEEIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITDARVERVTDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEA 839
+ VG V VK++E++ +G++RL+ + L EA
Sbjct: 665 LSVGQEVQVKVVEIDRQGRIRLTMKDLNNEA 695
>gi|386265388|ref|YP_005828880.1| polynucleotide phosphorylase [Haemophilus influenzae R2846]
gi|309972624|gb|ADO95825.1| Polynucleotide phosphorylase [Haemophilus influenzae R2846]
Length = 709
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIIAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|325291527|ref|YP_004277391.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
gi|325059380|gb|ADY63071.1| polynucleotide phosphorylase [Agrobacterium sp. H13-3]
Length = 715
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 447/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV
Sbjct: 240 ALENEMLGLAETELRTAYKITEKAARYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ +S ++ VFK + +K +R +++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YSPEEIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASASGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|32034381|ref|ZP_00134571.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|126208059|ref|YP_001053284.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|303252208|ref|ZP_07338376.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247551|ref|ZP_07529595.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307256599|ref|ZP_07538380.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307261033|ref|ZP_07542715.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263214|ref|ZP_07544834.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|187470959|sp|A3MZU3.1|PNP_ACTP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096735|sp|B3GXC1.2|PNP_ACTP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126096851|gb|ABN73679.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|302648991|gb|EFL79179.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306855916|gb|EFM88075.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306865009|gb|EFM96911.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306869335|gb|EFN01130.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871431|gb|EFN03155.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 715
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/748 (41%), Positives = 445/748 (59%), Gaps = 58/748 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D LSEE ++ AV G + + +K V+ GKP+ P L
Sbjct: 182 DKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A + +I K R + + +++ V+ L+ ++DETV
Sbjct: 242 INQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLT-----AQDETVS-------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ++D + + S +R RI+ G
Sbjct: 289 -------EGAIID-----------------------------IITALESSIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEK 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 372 SDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P P
Sbjct: 486 HLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++
Sbjct: 546 DISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAATDNNAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++ V IY+ ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 605 KAVMARIEDIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 664 YLSVGQEVTVKVVEIDRQNRIRLTMKDL 691
>gi|254361252|ref|ZP_04977395.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|452745241|ref|ZP_21945077.1| polynucleotide phosphorylase/polyadenylase [Mannheimia haemolytica
serotype 6 str. H23]
gi|153092748|gb|EDN73791.1| polyribonucleotide nucleotidyltransferase [Mannheimia haemolytica
PHL213]
gi|452086634|gb|EME03021.1| polynucleotide phosphorylase/polyadenylase [Mannheimia haemolytica
serotype 6 str. H23]
Length = 716
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 311/756 (41%), Positives = 451/756 (59%), Gaps = 60/756 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL+++G+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVSGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A L +I K R + + +++ +V+ L+ ++DETV
Sbjct: 243 NKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEVIAQLT-----AEDETVS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++D + + S+ +R RI+ G
Sbjct: 289 ------EGTIID-----------------------------IITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + +LPR HGSALFTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTSVLPRTHGSALFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EET +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETNT-SIDIDDDGTVKIAATDGNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I + V IY N ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 606 AVMARIEEIVAEVEVNQIY-NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL--LPEADAE 842
+ VG V VK++E++ +G++RL+ + + EA+AE
Sbjct: 665 LTVGQEVQVKVVEIDRQGRIRLTMKDINNTNEANAE 700
>gi|424909032|ref|ZP_18332409.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392845063|gb|EJA97585.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 715
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/757 (41%), Positives = 450/757 (59%), Gaps = 67/757 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMIATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDFS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV +P
Sbjct: 240 ALENEMLALAEAELRDAYKITEKAARYAAVDAVKAKVKA-----------------HFLP 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
+ EG+ P+ ++ VFK + +K +R +++
Sbjct: 283 E------------------EGEAKYTPE------------EIGAVFKHLQAKIVRWNVLD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMANAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGAIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK GD V VKL+ +++G++RLS + + E E
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKE 700
>gi|307245438|ref|ZP_07527526.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254392|ref|ZP_07536230.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258851|ref|ZP_07540583.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853779|gb|EFM85996.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862691|gb|EFM94647.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867202|gb|EFM99058.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 715
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/748 (41%), Positives = 445/748 (59%), Gaps = 58/748 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D LSEE ++ AV G + + +K V+ GKP+ P L
Sbjct: 182 DKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A + +I K R + + +++ V+ L+ ++DETV
Sbjct: 242 INQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLT-----AQDETVS-------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ++D + + S +R RI+ G
Sbjct: 289 -------EGAIID-----------------------------IITALESSIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ +D L + ++
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIVDEL-TGEK 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 372 SDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P P
Sbjct: 486 HLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++
Sbjct: 546 DISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAATDNNAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++ V IY+ ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 605 KAVMARIEDIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 664 YLSVGQEVTVKVVEIDRQNRIRLTMKDL 691
>gi|319775898|ref|YP_004138386.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
gi|317450489|emb|CBY86706.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3047]
Length = 709
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/754 (40%), Positives = 443/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTIDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI IIG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|165975991|ref|YP_001651584.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|226702591|sp|B0BUD5.1|PNP_ACTPJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|165876092|gb|ABY69140.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 715
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/748 (41%), Positives = 445/748 (59%), Gaps = 58/748 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D LSEE ++ AV G + + +K V+ GKP+ P L
Sbjct: 182 DKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A + +I K R + + +++ V+ L+ ++DET+
Sbjct: 242 INQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLT-----TQDETIS-------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ++D + + S +R RI+ G
Sbjct: 289 -------EGAIID-----------------------------IITALESSIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEK 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 372 SDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P P
Sbjct: 486 HLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++
Sbjct: 546 DISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAATDNNAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++ V IY+ ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 605 KAVMARIEDIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 664 YLSVGQEVTVKVVEIDRQNRIRLTMKDL 691
>gi|52424548|ref|YP_087685.1| polynucleotide phosphorylase/polyadenylase [Mannheimia
succiniciproducens MBEL55E]
gi|81387489|sp|Q65VB0.1|PNP_MANSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52306600|gb|AAU37100.1| Pnp protein [Mannheimia succiniciproducens MBEL55E]
Length = 704
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/747 (41%), Positives = 442/747 (59%), Gaps = 58/747 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ SV E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVSVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF +E QI++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K V GKP+ P L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFVAEAGKPRWDWVAPEPDSALI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 SKVKAIAENRLGDAYRITEKQVRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEVSEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQSLAV+TLG ++ AQ +D L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVVTLGTERDAQILDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE GR+G+P RREIGHG LA+R + V+PS ++FPY +RV S ITE
Sbjct: 373 DTFLFHYNFPPYSVGETGRVGSPKRREIGHGRLAKRGVAAVMPSISEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPVKSAVAGIAMGLVKEDDKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 LGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAISAPRAE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++++
Sbjct: 547 ISEFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAAVDGNAVK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I ++T G +Y ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 TVMARIEDITAEVEAGAVY-TGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
++VG V VK++E++ +G++RL+ R L
Sbjct: 665 LQVGQEVQVKVVEIDRQGRIRLTMRDL 691
>gi|260580886|ref|ZP_05848711.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
gi|260092509|gb|EEW76447.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
RdAW]
Length = 709
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGVIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|103486036|ref|YP_615597.1| polynucleotide phosphorylase/polyadenylase [Sphingopyxis alaskensis
RB2256]
gi|123380103|sp|Q1GVQ8.1|PNP_SPHAL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|98976113|gb|ABF52264.1| 3' exoribonuclease [Sphingopyxis alaskensis RB2256]
Length = 771
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/751 (41%), Positives = 443/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I +G + +ETG + RQA GAV T GET++ +V A + DFFPL V+YQE+
Sbjct: 7 VSIEWGGETLTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKDGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E ++ VLSYDG + P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSYDGHNEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ +S VP I RVG + ++I+NPT +++ + LDL++A + DA+
Sbjct: 127 DILAMVAASAALTISGVPFMGPIGAARVGYLNGEYILNPTDEQVAEGDLDLVVAATHDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E + LSEE+++ AV DA +E+ + L E K L +
Sbjct: 187 MMVESEANELSEEVMLGAVLFAHDACKEVVKAIIKLAEQAAKEPWEIASSDDDAALKDKL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
++ G+++ ++ +K R AL+ K
Sbjct: 247 RKLIGKDIAAAYKLTDKSARSNALNEARAKA----------------------------- 277
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E + DG + P++ + +K+V K++ ++ +R I++ G+R D
Sbjct: 278 --KESFIADG--------LDPQAVMAG--------IKIV-KKLEAEIVRTAILKEGKRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + LPRAHGSALFTRGETQ++A TLG K Q ID L + F
Sbjct: 319 GRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGL-SYQHF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS ++FPYTIR+ S ITESNG
Sbjct: 378 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTIRLTSDITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGG LA+ DAGVPIK ++G+AMG++L+ ++ ILSDI G ED GD
Sbjct: 438 SSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYA------ILSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +GIT QMDIK+ GIT + + AL QAK+GR HIL EM K LS
Sbjct: 492 MDFKVAGTSEGITTMQMDIKIAGITREIFEAALAQAKEGRAHILGEMNKALGEVRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I M++ KI +IG+GGK ++ I+ TG + +D +D+G +KI++ DL +E ++
Sbjct: 552 HAPRIETMQIDKAKIRDVIGTGGKVIREIVATTGAK-VDIDDEGLIKISSSDLDQIEAAR 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I+ + VG IY + ++ ++ +G FV G++GL H+SE+ + + K DV+
Sbjct: 611 KWIAGIVEEAEVGKIY-DGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNERVEKVADVLSE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E AE
Sbjct: 670 GQDVKVKVLEIDPRGKVRLSMRVVDQETGAE 700
>gi|417841284|ref|ZP_12487388.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19501]
gi|341949322|gb|EGT75926.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M19501]
Length = 709
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/754 (40%), Positives = 445/754 (59%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ +++ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADLISQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|154254063|ref|YP_001414887.1| polynucleotide phosphorylase/polyadenylase [Parvibaculum
lavamentivorans DS-1]
gi|187610324|sp|A7HZ97.1|PNP_PARL1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154158013|gb|ABS65230.1| Polyribonucleotide nucleotidyltransferase [Parvibaculum
lavamentivorans DS-1]
Length = 728
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/762 (41%), Positives = 450/762 (59%), Gaps = 63/762 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R +++ETG + RQA GAV T G+T + +V P DFFPL VNYQE+
Sbjct: 8 EIEWGGRTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLTVNYQEKT 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + E LV RLIDRP+RP IKGF +ETQ+++ V+S+D + PD
Sbjct: 68 YAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSHDMENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A A+ +S +P I RVG +G ++ +NP EM +S LDL++AG+ DA++
Sbjct: 128 IVAMIAVSAALTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESALDLVVAGTADAVM 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSE++++ AV G + + + + + E C K P+ +D EL V
Sbjct: 188 MVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKEPRAIDVKD--NSELVAKV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+A ++ +K+K R +AL++ ++KV + L
Sbjct: 246 RELAESDVRAAYGLKDKGQRHEALAAAKDKVKSALCNP---------------------- 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
ED P SE DV VFK + S +R I++ R D
Sbjct: 284 -ED------------------------PNAVSETDVGGVFKSIESDVVRNSILDTKSRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + +RPI S G+LPR HGSALFTRGETQ+L V TLG Q ID LE + + F
Sbjct: 319 GRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTGDDEQFIDALEGTYK-ENF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G RRE+GHG LA RAL VLP +FPYT+R+ S ITESNG
Sbjct: 378 LLHYNFPPFSVGETGRVGFTGRREVGHGKLAWRALRAVLPPKTEFPYTLRLVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LA+ DAGVP+K ++AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 438 SSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG ++G+T+ QMDIK+ GI +MK+AL QAK GR HIL EM K + +
Sbjct: 492 MDFKVAGTQEGVTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAKALDTARPEMGE 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I ++ V +KI +IG+GGK ++ I+E+TG + +D DDGT+K+ + D S+ K+
Sbjct: 552 YAPRIEVITVPTDKIREVIGTGGKVIREIVEKTGAK-VDISDDGTIKVASSDGESIRKAI 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
A I + P VG IY +K++ +G FV R+GL HIS+++ + + DVVK
Sbjct: 611 AWIQGIVAEPEVGKIYEGTVVKAV-DFGAFVNFFGPRDGLVHISQMAPTRVEQVSDVVKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADA----ENPPVKLP 849
GD V VKL+ +D+G++RLS + + E EN P + P
Sbjct: 670 GDKVKVKLLGFDDRGKVRLSMKHVNQETGEEIVYENEPAEQP 711
>gi|145628545|ref|ZP_01784345.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145639858|ref|ZP_01795459.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|378696376|ref|YP_005178334.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|144979015|gb|EDJ88701.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
22.1-21]
gi|145271076|gb|EDK10992.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittII]
gi|301168898|emb|CBW28492.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
10810]
gi|309750352|gb|ADO80336.1| Polynucleotide phosphorylase [Haemophilus influenzae R2866]
Length = 709
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|145637206|ref|ZP_01792868.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
gi|145269651|gb|EDK09592.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittHH]
Length = 709
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVTIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|113460848|ref|YP_718915.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
129PT]
gi|170717334|ref|YP_001784444.1| polynucleotide phosphorylase/polyadenylase [Haemophilus somnus
2336]
gi|123031253|sp|Q0I2T0.1|PNP_HAES1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037307|sp|B0UTJ5.1|PNP_HAES2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|112822891|gb|ABI24980.1| polynucleotide phosphorylase [Haemophilus somnus 129PT]
gi|168825463|gb|ACA30834.1| Polyribonucleotide nucleotidyltransferase [Haemophilus somnus 2336]
Length = 713
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 310/748 (41%), Positives = 445/748 (59%), Gaps = 58/748 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VN
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTSVFVTVVAKKDVKEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E QI++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQIIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMNEQKQSRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K GKP+ T L
Sbjct: 182 DKAVLMVESEADILTEEQMLAAVVFGHQQQQIVIEAIKEFAAEAGKPRWDWTAPEANTIL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ IA L +I K R + + ++ V+T ++ ++DET+
Sbjct: 242 IEKVKSIAENRLGDAYRITEKQARYEQIDLIKADVITQVT-----AEDETI--------- 287
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
SE + +F + S+ +R RI+ G
Sbjct: 288 -----------------------------------SEGKIIDIFTALESQIVRGRILRGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEK 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS ++FPY +RV S IT
Sbjct: 372 TDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDNF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 486 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG V+S+ EETG +ID +DDGTVKI A D +++
Sbjct: 546 DISDFAPRIYTMKIDPKKIKDVIGKGGATVRSLTEETGT-SIDIDDDGTVKIAAVDKNAV 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ + I ++T VG +Y+ ++ +A +G FV + +EGL HIS+++ + K D
Sbjct: 605 QEVMSRIEDITAEVEVGVVYKG-KVTRLADFGAFVALVGNKEGLVHISQIAEERVEKVSD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ +G V VK++E++ +G++RL+ + L
Sbjct: 664 YLAIGQEVIVKVLEIDRQGRIRLTMKEL 691
>gi|398355878|ref|YP_006401342.1| polyribonucleotide nucleotidyltransferase Pnp [Sinorhizobium fredii
USDA 257]
gi|390131204|gb|AFL54585.1| polyribonucleotide nucleotidyltransferase Pnp [Sinorhizobium fredii
USDA 257]
Length = 717
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/749 (42%), Positives = 445/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +++ AA A+ LS +P I G RVG + ++++NP EME+S LDL++AG+ +A+
Sbjct: 127 DVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMEESSLDLVVAGTQEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ D PE +
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPREFD------PEDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA +EL +I K R A+ +++ KV +P+
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKEHF-----------------LPE 283
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+E+ E ++ VFK + +K +R I++
Sbjct: 284 GIENPAHSAE-----------------------------EIASVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP FPYT+RV S I
Sbjct: 375 K-ERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEDRFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT+ QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|374314854|ref|YP_005061282.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350498|gb|AEV28272.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
Length = 701
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/744 (41%), Positives = 446/744 (59%), Gaps = 55/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ VSVKI G+ +++ ETG + +QASGAV + + +VC + P+E D+ PL+V
Sbjct: 5 KKVSVKI--GNGELVFETGKIAKQASGAVYAHYEGSAVIATVCCGNAPTEALDYVPLSVE 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E++ AAG+ GGF KRE R KD E+LV R+IDRP+RP K F E QI+ V+S D
Sbjct: 63 YNEKYYAAGKIPGGFLKRESRPKDKEILVSRIIDRPMRPLFDKAFGREIQIVPTVVSSDM 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ PD +AV AA AV +S++P IA VR+ ++ +++IVNPT ++E SQLD+++AG+
Sbjct: 123 INTPDIIAVNAASAAVTISDIPFDGPIAAVRIAMLDNEYIVNPTFAQIEQSQLDIVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ I M+EG +SEE ++ A+ Q + I + L ++ GK K+ ++
Sbjct: 183 RNGITMVEGGAKEVSEETMLGAIATAQPVITAICDAQLELKKIAGKAKLPVFVETVDLSW 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + A + + +K K+ R AL + K+
Sbjct: 243 LDSVRKAAYPLIKEASFVKGKMERYAALEVAQNKI------------------------- 277
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ++ +PK +F +++ ++ LR I+ G
Sbjct: 278 -------------KEQFAAEIAAEPKHSSQLSTMFDDLEYEI---------LRSSILNDG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR + IRPI+ G+L RAHGSALFTRGETQ+LAV TLG Q D ++ +
Sbjct: 316 LRTDGRNVEQIRPITCEVGVLARAHGSALFTRGETQALAVTTLGTASDEQMFDTIDGEKT 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE GR+ + RREIGHG LA+RAL ++PS + FPYT+R+ S I
Sbjct: 376 FSNFMLHYNFPPYSVGECGRL-STGRREIGHGHLAQRALSAIVPSKDKFPYTVRIVSEIM 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCL+L DAGVPI +AG+AMG++ + ++ ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGGCLSLMDAGVPISKPVAGIAMGLITEGADYS---KYVVLSDILGEED 491
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKV G EDGITAFQMDIK+ G+T +M KALQQAK GR HIL M + P
Sbjct: 492 HLGDMDFKVTGTEDGITAFQMDIKIAGVTPEIMSKALQQAKRGRLHILHIMNETLKAPRK 551
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S++AP I MKV EKI +IG+GGK +K+I ++G E ++ DDGTV I K+ +S
Sbjct: 552 EISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIAAQSGSE-VNIADDGTVTIYGKNNASA 610
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ +K ++ ++ P +G IY+ +K I +G F+EI PG+EGLCHIS+L+ + K E+
Sbjct: 611 QMAKDLVKSIIEEPEIGRIYQGT-VKRIMDFGAFIEILPGKEGLCHISKLAKTRVQKVEE 669
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
V+ VG ++ VKLIE++ + +L LS
Sbjct: 670 VLTVGQVIPVKLIEIDRQNRLNLS 693
>gi|350265984|ref|YP_004877291.1| polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598871|gb|AEP86659.1| Polyribonucleotid nucleotidyl transferase PnpA [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 705
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/743 (42%), Positives = 451/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + D+FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIALYEIDEELSEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++L+K +Q+ K R A++ + +N V+K EDE+
Sbjct: 249 LAEKDLLKAIQVHEKHAREDAINEV---------KNTVVAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D SS +K++ I
Sbjct: 554 PKILTMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESSNQKAQKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|145640150|ref|ZP_01795734.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
R3021]
gi|229846318|ref|ZP_04466426.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
gi|145274736|gb|EDK14598.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
22.4-21]
gi|229810411|gb|EEP46129.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
7P49H1]
Length = 709
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|114798182|ref|YP_762114.1| polynucleotide phosphorylase/polyadenylase [Hyphomonas neptunium
ATCC 15444]
gi|123128295|sp|Q0BWM9.1|PNP_HYPNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114738356|gb|ABI76481.1| polyribonucleotide nucleotidyltransferase [Hyphomonas neptunium
ATCC 15444]
Length = 713
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 319/755 (42%), Positives = 451/755 (59%), Gaps = 62/755 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV + + R + +ETG + RQA GAV V G+TI+ + A DFFPL VNYQE
Sbjct: 6 SVSLEWAGRTLTIETGQVARQADGAVMVQYGDTIVLATAVFAKEAKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++ A+GR GGFFKREGR + E L RLIDRP+RP + GF HE Q++ LSYD +
Sbjct: 66 KYFASGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFVDGFKHEVQVVVTTLSYDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
D +A+ A A+ LS P I RVG ++I+NPT E+E+S+LDL++AG+ DA
Sbjct: 126 ADIIALVGASAALVLSGAPFMGPIGAARVGYKDGQYIINPTIAELEESELDLVVAGTTDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---L 327
++M+E LSE++++ AV G DA++ + + + AL E K + PP+
Sbjct: 186 VMMVESQAAELSEDVMLGAVVAGHDAMQPVIDAIIALAEKAAK----EPFAYEPPDHSAA 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
K V + G +L K +I K R A+ + ++K L + DE G++
Sbjct: 242 LKSVIDTVGADLSKAYKITAKGERYAAIGAAKDKAKAAL-----LGTDEAPGVM------ 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
TP +F K VFKE + +R I++ G
Sbjct: 291 ------------------------------TPEVF-----KTVFKEAEASVVRGDILKTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D IRPI + G LPR HGS+LFTRGETQ++ V TLG Q ID L+ +
Sbjct: 316 QRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTKK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
++F L Y+FPP SVGE GR+G RREIGHG LA RAL+ VLP DFPYTIR+ S IT
Sbjct: 376 -EKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKHEDFPYTIRMVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ EF +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E+G+T+ QMDIKV GIT +M KAL+QAK GR HIL EM K
Sbjct: 489 HLGDMDFKVAGTENGVTSLQMDIKVAGITKDIMGKALEQAKGGRMHILGEMGKALTASRG 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP + I+KV +KI +IGSGGK ++ I++ETG + ++ +DDGTV+I+A D S+
Sbjct: 549 QLSENAPQMEIIKVPTDKIRDVIGSGGKVIRGIVDETGAK-VNIDDDGTVQISAMDRKSI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + +I +T VG+IY ++ S+ +G+FV ++GL H+S++++ + ++
Sbjct: 608 DAAIKMIKGITAEAEVGEIYEG-KVVSMKDFGIFVNFFGPKDGLVHVSQMANKRIGHPKE 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
+VK GD V VKL+ +++G++RLS + + E E
Sbjct: 667 MVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|92115668|ref|YP_575397.1| polynucleotide phosphorylase/polyadenylase [Nitrobacter
hamburgensis X14]
gi|91798562|gb|ABE60937.1| Polyribonucleotide nucleotidyltransferase [Nitrobacter hamburgensis
X14]
Length = 748
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 325/770 (42%), Positives = 459/770 (59%), Gaps = 59/770 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+YQE
Sbjct: 34 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYQE 93
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP G+ +ETQ++ VLS+D +
Sbjct: 94 KTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMEND 153
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS P I RVG + D++++NPT EM D+QL+L++AG+ DA
Sbjct: 154 PDVLAMVAASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVAGTADA 213
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E LSE++++ AV G R + A++E+
Sbjct: 214 VLMVESEAKELSEDIMLGAVMFGH---RHFQPVINAIIELA------------------- 251
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
E A +E +V Q + S+LE+++L ++ E P
Sbjct: 252 --EKAAKEPREVSQADD--------SALEKEMLGLIEG-------------ELRPAYAIA 288
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ + + V + H P+ ++ + ++ + VFK + +K +R I++ G+R
Sbjct: 289 DKQQRQNAVAAAKAKVIAHYFPEGQEPK---YDKLRIAAVFKHLEAKIVRWNILDTGKRI 345
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR A +R I + G+LPRAHGSALFTRGETQ++ V TLG + Q ID L S +
Sbjct: 346 DGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDAL-SGTYKET 404
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+ RREIGHG LA RA+ PVLP ++FPYTIRV S ITESN
Sbjct: 405 FLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITESN 464
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCG L+L DAGVP+K AG+AMG++L+ + +LSDI G ED G
Sbjct: 465 GSSSMASVCGASLSLMDAGVPLKRPTAGIAMGLILEGSRYA------VLSDILGDEDHLG 518
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GI++ QMDIK+ GIT +MK AL QA++GR HIL EM K L
Sbjct: 519 DMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRIHILGEMAKALTNARAELG 578
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP I K+ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+ + D +++ +
Sbjct: 579 EYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-INIEDDGTVKVASNDGEAMKAA 637
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++ P VG IY +K + +G FV ++GL HIS+L++N + K+ D+VK
Sbjct: 638 IKWIKSIASDPEVGQIYEGTVVK-VMEFGAFVNFFGAKDGLVHISQLAANRVQKSSDIVK 696
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEA--DAENPPVKLPTGDPTKDAA 858
GD V VKL+ +D+G+ RLS +A+ + D E K D ++AA
Sbjct: 697 EGDKVKVKLLGFDDRGKTRLSMKAVDQQTGEDLEAAGHKAEKADAPREAA 746
>gi|419839523|ref|ZP_14362930.1| polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
HK386]
gi|386909383|gb|EIJ74058.1| polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
HK386]
Length = 709
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/754 (40%), Positives = 443/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ + ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADAIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|404316827|ref|ZP_10964760.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum anthropi
CTS-325]
Length = 713
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 322/752 (42%), Positives = 447/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVLTVVQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I G RVG + ++++NP EM +S+LDL++AG+ DA+
Sbjct: 127 DVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E LSEE+++ AV GQ + + + + L E+ K P+ PE
Sbjct: 187 LMVESEAQELSEEVMLGAVVFGQKGFQPVIDAIIKLAEVAAKEPRDFQ------PE---- 236
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
LS LE KVL ++ + + T
Sbjct: 237 -----------------------DLSDLEAKVLAVIENDLRDAYKIT------------- 260
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E + V VD + H P+ + M S +FK + +K +R I++ G R
Sbjct: 261 EKQARYVAVDAAKAKAKAHFFPEGVEEPEM--SPEQFATIFKHLQAKIVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S GLLPR HGSALFTRGETQ++ V TLG + Q ID L + +
Sbjct: 319 DGRDLKTVRAIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYK-ES 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RRE+GHG LA RA+ P+LP+ + FPYTIR S ITESN
Sbjct: 378 FMLHYNFPPYSVGETGRMGSPGRREVGHGKLAWRAIHPMLPAADQFPYTIRSVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D + +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGDRYA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K + L
Sbjct: 492 DMDFKVAGTDNGITALQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKALSTSRDELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + + +
Sbjct: 552 EFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNGKEIAAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+S+ +AK DVVK
Sbjct: 611 KKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLASDRVAKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VKL+ +++G++RLS + + E E
Sbjct: 670 EGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|359300105|ref|ZP_09185944.1| polynucleotide phosphorylase/polyadenylase [Haemophilus
[parainfluenzae] CCUG 13788]
Length = 712
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/747 (41%), Positives = 440/747 (58%), Gaps = 58/747 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E LV RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K V GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLSAVVFGHQQQQVVIENIKEFVREAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A + +I K R + ++ +V+ L+ ++DETV
Sbjct: 243 NKVKALAEARIGDAYRITEKQARYAQIDEIKAEVIATLT-----AEDETVS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++D + + S +R RI+ G
Sbjct: 289 ------EGAIID-----------------------------IITALESSIVRGRILAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTKDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDNF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I ++ V IY ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 AVMARIEDIVAEVEVNAIY-TGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 665 LTVGQEVQVKVVEIDRQNRIRLTMKDL 691
>gi|220931634|ref|YP_002508542.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
gi|254782723|sp|B8CW78.1|PNP_HALOH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219992944|gb|ACL69547.1| Polyribonucleotide nucleotidyltransferase [Halothermothrix orenii H
168]
Length = 705
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/739 (43%), Positives = 446/739 (60%), Gaps = 50/739 (6%)
Query: 104 ETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFF 163
ETG +QA+G+V G+T + + +++ P E D+FPL VNY+ER A G+ G
Sbjct: 17 ETGKYAKQANGSVVARYGDTTVLVTATMSE-PREGIDYFPLMVNYEERVYAIGKIPGSIT 75
Query: 164 KREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAV 223
+REGR +D L RLIDRPLRP +GF H+ QI++ VLS D PD LA+ A +A+
Sbjct: 76 RREGRPRDVATLAARLIDRPLRPLFPEGFRHDVQIIATVLSVDNDCEPDILALNGASVAL 135
Query: 224 ALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSE 283
LS++P I GV+VGLV + ++NP +E E S+LDL +AG+ DA+LM+E + +SE
Sbjct: 136 TLSDIPFDGPIGGVKVGLVDGELVINPDEEEREKSKLDLTVAGTRDAVLMVEAGANEVSE 195
Query: 284 EMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVL 343
++++ A+++ ++ + + + E GK K T PEL + + + ++ L
Sbjct: 196 DVMLDAIELAHQEIKRLVLLQEEIGEEAGKKKFEFTKDEITPELDEEIRKYISSDMENAL 255
Query: 344 QIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEV 403
+I K+ R + ++E L D+ E+ D E
Sbjct: 256 RIPEKLERNAKVDEIKENTLQYFE------------------DMFENNGLDNE------- 290
Query: 404 DEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISS 463
K+ + E ++ V KE +R+ I+E G R DGR D IRPI
Sbjct: 291 -----------EKNKQLKMVERTIEKVMKEK----VRKMIIEEGIRPDGRKPDEIRPIWC 335
Query: 464 RCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVG 523
G LPR HGS +FTRG+TQ+L+V+TLG Q + L ++E KR+ Y+FPP SVG
Sbjct: 336 EVGTLPRVHGSGVFTRGQTQALSVVTLGATSDEQILFGL-GEEETKRYMHHYNFPPYSVG 394
Query: 524 EVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCL 583
E + +P RREIGHG L ERAL+PV+P +FPYTIRV S + ESNGS+S AS+CG L
Sbjct: 395 ETSPLRSPGRREIGHGALGERALQPVIPDQEEFPYTIRVVSEVLESNGSTSQASICGSTL 454
Query: 584 ALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGI 643
AL DAGVPIK +AG+AMG++ + D +ILSDI G ED GDMDFKVAG +GI
Sbjct: 455 ALMDAGVPIKEPVAGIAMGLLKE------DEKVVILSDIQGLEDFYGDMDFKVAGTRNGI 508
Query: 644 TAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKP 703
TA QMDIK+ GI+ ++KKAL++A++GR +IL +ML+ P LS +APL+ MKV P
Sbjct: 509 TALQMDIKIHGISKEILKKALKRAREGRLYILDKMLQVIDKPRPELSPYAPLMITMKVSP 568
Query: 704 EKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTV 763
+KI IIG GGK + II+ETGVE ID +DDG+V I A+D S ++K II+ LT V
Sbjct: 569 DKIRHIIGPGGKIINKIIDETGVE-IDIDDDGSVYILAQDQESGNRAKEIINKLTKEVEV 627
Query: 764 GDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVN 823
GDIY +K I +G FVEI PGREGL HISEL+ + + K ED+VK+GD + VK+IE++
Sbjct: 628 GDIYEG-RVKKITNFGAFVEILPGREGLVHISELADHHVKKVEDIVKIGDRIPVKVIEID 686
Query: 824 DKGQLRLSRRALLPEADAE 842
+ G++ LSR+ L E E
Sbjct: 687 ELGRINLSRKRALKEQKKE 705
>gi|260582885|ref|ZP_05850670.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
gi|260094098|gb|EEW78001.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
NT127]
Length = 709
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 443/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFTKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEGISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|424889220|ref|ZP_18312823.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393174769|gb|EJC74813.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 712
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/749 (42%), Positives = 447/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDHSELEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + +I K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELREGYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 --------------------KAHFFPEGVE--PKYSAEV-IGAVFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|90420519|ref|ZP_01228426.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
manganoxydans SI85-9A1]
gi|90335247|gb|EAS49000.1| polyribonucleotide nucleotidyltransferase [Aurantimonas
manganoxydans SI85-9A1]
Length = 710
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 319/752 (42%), Positives = 450/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIDWAGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKQPKPGLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GGFFKREGR + E LV RLIDRP+RP +G+ +ETQ++ VL +D + P
Sbjct: 67 TFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFAQGYKNETQVVVTVLQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ LS VP I G RVG + ++ +NP EM +SQLDL++AG++ A+
Sbjct: 127 DVLAMVAASAALTLSGVPFMGPIGGARVGYINGEYKLNPHVDEMSESQLDLVVAGTEGAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L+E++++ AV G + + + + L E K P+ + + L
Sbjct: 187 LMVESEAHELAEDIMLGAVMFGHRGFQPVIDAIIKLAEHAAKEPR--EHVVADYSALEAE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ EL +I +K R A+ +++ KV G+ +P+ +ED
Sbjct: 245 MLQLVEGELRDAYKITDKTQRYTAVDAVKAKV------TGHF-----------LPEGVED 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+S+ V VFK + +K +R I++ G R
Sbjct: 288 TK-----------------------------YSKEQVGTVFKSLQAKIVRWNILDTGGRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPRAHGSALFTRGETQ+L V TLG + Q +D L + +R
Sbjct: 319 DGRDLKTVRKIVSEAGILPRAHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYK-ER 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ FPYTIR S +TESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPAPEQFPYTIRAVSEVTESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+K S+AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLKRSVAGIAMGLIKEDERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GIT+ QMDIK+ GIT +M+ AL QAK GR HIL EM + L
Sbjct: 492 DMDFKVAGTSEGITSLQMDIKIQGITEEIMQIALDQAKGGRLHILQEMGQALSESRAELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M++ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVKI + +E +
Sbjct: 552 EFAPRIEVMQIPTDKIRDVIGAGGKIIREIVEKTGAK-INIEDDGTVKIASSSGKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG++Y +K++ +G FV R+GL HIS+L+++ +AK D+VK
Sbjct: 611 KKWIHSIVAEPEVGEVYEGTVVKTV-EFGAFVNFFGSRDGLVHISQLAADRVAKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VKL+ +++G++RLS + + E E
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVVDQETGQE 701
>gi|307249785|ref|ZP_07531763.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858200|gb|EFM90278.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 715
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/748 (41%), Positives = 444/748 (59%), Gaps = 58/748 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISHLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D LSEE ++ AV G + + +K V+ GKP+ P L
Sbjct: 182 DKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A + +I K R + + +++ V+ L+ ++DET+
Sbjct: 242 INQVKALAEARIGDAYRITEKQARYEQIDAIKADVVAQLT-----TQDETIS-------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ++D + + S +R RI+ G
Sbjct: 289 -------EGAIID-----------------------------IITALESSIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEK 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 372 SDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P P
Sbjct: 486 HLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++
Sbjct: 546 DISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAATDNNAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++ V IY+ ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 605 KAVMARIEDIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 664 YLSVGQEVTVKVVEIDRQNRIRLTMKDL 691
>gi|296330884|ref|ZP_06873359.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674402|ref|YP_003866074.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151889|gb|EFG92763.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412646|gb|ADM37765.1| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 705
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + D+FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + +V GK K + EL V+
Sbjct: 189 VEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIALYEIDEELSDKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ + +N V+K EDE+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEV---------KNTVVAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG + G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTDKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D SS +K++ I
Sbjct: 554 PKILTMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESSNQKAQKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|254503471|ref|ZP_05115622.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
gi|222439542|gb|EEE46221.1| 3' exoribonuclease family, domain 2 [Labrenzia alexandrii DFL-11]
Length = 711
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 324/753 (43%), Positives = 452/753 (60%), Gaps = 56/753 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G R +++ETG + RQA G+V T GET + +V A P DFFPL VNYQE+
Sbjct: 8 VEVDWGGRPLILETGKVARQADGSVMATYGETKVLATVVSAKAPRAGQDFFPLTVNYQEK 67
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR +HE L RLIDRP+RP G+ ++TQ++ VLS+D + P
Sbjct: 68 AFAAGKIPGGYFKREGRPSEHETLTSRLIDRPIRPLFADGYKNDTQVVITVLSHDMENAP 127
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ LS VP I G RVG + ++++NP +M +S LDL++AG+ DA+
Sbjct: 128 DILAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPLVDDMPESALDLVVAGTSDAV 187
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L EE ++ AV G + + + + L E G + + EL V
Sbjct: 188 LMVESEAKELDEETMLGAVMFGHKGFQTVIDAIIKLAE-AGAKEPREFTAADHSELLGKV 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+ IA ++L +I K R+ A+ + + KV+ L N ++ ETV
Sbjct: 247 KAIAADDLAAAYKITAKTERKNAVDAAKAKVVEALITN--AAEGETV------------- 291
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E V GE FK++ ++ +R I++ G R D
Sbjct: 292 ----EANVLGEQ---------------------------FKKLEAEIVRGGILDTGTRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +R ISS G+L RAHGS+LFTRGETQ L V TLG + Q ID LE + F
Sbjct: 321 GRDLSTVRQISSEVGILSRAHGSSLFTRGETQGLVVATLGTGEDEQFIDLLEGTVK-SHF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYT+RV S ITESNG
Sbjct: 380 MLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAINPMLPAHHEFPYTLRVVSEITESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG L+L DAGVP+K +AG+AMG++ + + F +LSDI G ED GD
Sbjct: 440 SSSMATVCGTSLSLMDAGVPLKAPVAGIAMGLIKEGERFA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM + L +
Sbjct: 494 MDFKVAGSENGITALQMDIKIDGITEEIMKVALEQAKGGRIHILGEMANAITEARSELGE 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +MK+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVKI + D +++ +
Sbjct: 554 HAPRIEMMKIPVDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKIASSDGKAIKAAV 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I+++ P VG IY +K + +G FV ++GL HIS+L+ +AK DVVK
Sbjct: 613 NWINSIAAEPEVGVIYEGTVVKCV-DFGAFVNFFGAKDGLVHISQLAPKKVAKVTDVVKE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
GD V VKL+ +++G++RLS + + E E P
Sbjct: 672 GDKVWVKLMGFDERGKVRLSMKVVDQETGQEIP 704
>gi|229844934|ref|ZP_04465071.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
gi|229812068|gb|EEP47760.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
6P18H1]
Length = 709
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLLARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|116249886|ref|YP_765724.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. viciae 3841]
gi|123385010|sp|Q1MN44.1|PNP_RHIL3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115254534|emb|CAK05608.1| putative Polynribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium leguminosarum bv.
viciae 3841]
Length = 712
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 445/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ P Y
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PADYS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL +I K R A+ +++ KV
Sbjct: 240 ALESEMLGLAEGELRNAYKITQKADRYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|167855122|ref|ZP_02477894.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219870717|ref|YP_002475092.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
gi|254782722|sp|B8F492.1|PNP_HAEPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167853757|gb|EDS24999.1| polyribonucleotide nucleotidyltransferase [Haemophilus parasuis
29755]
gi|219690921|gb|ACL32144.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
SH0165]
Length = 709
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 310/753 (41%), Positives = 450/753 (59%), Gaps = 58/753 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V +E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + ++F++NPTT E S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + + +K V+ GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A L +I K R + + +++ V+ L+ ++DET+
Sbjct: 243 NKVKALAEARLGDAYRITEKQARYEQIDAIKADVIAQLT-----AEDETIS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
G++ VD+ + S+ +R RI+ G
Sbjct: 289 -----------SGKI---------------------VDI---ITALESQIVRSRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSALFTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P +
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRSE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I + V IY+ ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 RVMERIEEIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITDARVERVADY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
+ VG V VK++E+ +G++RL+ + L +A A
Sbjct: 665 LSVGQDVQVKVVEIERQGRIRLTMKDLNGDATA 697
>gi|149185848|ref|ZP_01864163.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
SD-21]
gi|148830409|gb|EDL48845.1| polynucleotide phosphorylase/polyadenylase [Erythrobacter sp.
SD-21]
Length = 763
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/761 (41%), Positives = 438/761 (57%), Gaps = 61/761 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V I +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSIEWGGKTLTLETGQIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKREGR + E L RLIDRP+RP +GFY+E ++ VLS+DG
Sbjct: 66 KFSAAGRIPGGFFKREGRATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSFDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEM--EDSQLDLLLAGSD 268
PD +A+ AA A+ +S VP I RVG ++ +NP+ E+ +LDL++A +
Sbjct: 126 PDIVAMIAASAALTISGVPFMGPIGAARVGFRNGEYELNPSLANALDEEGRLDLVVAATQ 185
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DA++M+E L+EE ++ AV D R++ + L E K +
Sbjct: 186 DAVMMVESEAKELTEEEMLGAVAFAHDEARKVVGAIVDLAEQAAKDPWEIERADDLSGMK 245
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ + G+++ +I +K RR + + +KV
Sbjct: 246 DEIRGLIGDDIAAAYKITDKSERRDRIDAARDKVKA------------------------ 281
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+ EDED + ++ + K++ S+ +R I++ G
Sbjct: 282 KYEDEDGQ--------------------------TQSAANKIIKKLESEIVRGSILKDGT 315
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +RPI + GLLPR HGSALFTRGETQ++ TLG K Q ID LE
Sbjct: 316 RIDGRKLDQVRPIEAMVGLLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGLEGLS-Y 374
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F L Y+FPP SVGEVGR G SRRE GHG LA RAL PVLP DFPYTIR+ S ITE
Sbjct: 375 NNFMLHYNFPPYSVGEVGRFGFTSRRETGHGKLAWRALHPVLPDHEDFPYTIRILSDITE 434
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGGCL++ DAGVPI+ ++G+AMG++L+ ++F +LSDI G ED
Sbjct: 435 SNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGEDFA------VLSDILGDEDH 488
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+E GIT QMDIKV GIT +M KAL+QAK GR+HIL EM K
Sbjct: 489 LGDMDFKVAGSEAGITTMQMDIKVAGITQEIMAKALEQAKAGRQHILGEMAKALGSARTG 548
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+SKHAP I M++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ + +E
Sbjct: 549 VSKHAPRIETMQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSNADEIE 607
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ I + VG +Y N ++ +I +G FV G++GL H+SE+ + + K DV
Sbjct: 608 AARKWIEGIVEEAEVGKVY-NGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDV 666
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
V G V VK++E++ +G++RLS R + E E + P
Sbjct: 667 VSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPP 707
>gi|319408006|emb|CBI81660.1| polyribonucleotide nucleotidyltransferase [Bartonella
schoenbuchensis R1]
Length = 733
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 312/745 (41%), Positives = 456/745 (61%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAVLATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKRE R ++E L+ RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IAG RVG ++++NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ D I +L
Sbjct: 187 LMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPR--DFIPEDLSDLETT 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ + ++L K I +K R A+ +++ +V+ + ++SK +E+
Sbjct: 245 MLGMVEKDLQKAYTITDKQERHTAIDAIKAEVV-----DKFMSK-------------IEE 286
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E F+ + VFK + +K +R+ I++ G+R
Sbjct: 287 NCE----------------------------FNADQIATVFKHLQAKIVRQNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPRAHGSALFTRGETQ+L + TLG + Q ID+L + +
Sbjct: 319 DGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGTSEDEQYIDSLTGTYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GRI +P RREIGHG LA RA+ P+LP+ + FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAIHPMLPTKDSFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GIT+ QMDIK+ GIT +MK AL+QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMSKALTSARDELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ ED+G +KI + D ++E +
Sbjct: 552 EFSPRIEMMNIPVDKIRDVIGSGGKVIREIVEQTGAK-INIEDNGAIKIASTDAKAIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P +G IY+ +K+ A +G FV R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPEIGSIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVEKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|49473865|ref|YP_031907.1| polynucleotide phosphorylase [Bartonella quintana str. Toulouse]
gi|81647260|sp|Q6G0P7.1|PNP_BARQU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49239368|emb|CAF25701.1| Polyribonucleotide nucleotidyltransferase [Bartonella quintana str.
Toulouse]
Length = 733
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 446/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F A GR GG+ KRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ YD + P
Sbjct: 67 FYAVGRIPGGYLKRESRPTESETLISRLIDRPIRPLFADGYKNDTQVIVSVIQYDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++I+NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNKQYILNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ D I +L
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPR--DFIPEDLSDLETA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+ +++ K I +K R A+ L+ +++ N ++S+ E
Sbjct: 245 MLEMVEQDIRKAYTITDKQERSTAIDVLKTEII-----NKFMSETEE------------- 286
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ +R
Sbjct: 287 ----------------------------NCKFSADQIATVFKQLQAKIVRSNILDTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ IAG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLVRPIAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GITA QMDIK+ GIT +MK AL+QA+DGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTNNGITALQMDIKIDGITEEIMKIALEQARDGRIHILNEMAKALTSARDELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ ED+GT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDNGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L++ + K +VVK
Sbjct: 611 KRWIHSIVDEPEVGGIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLTTERVTKTTNVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|393720906|ref|ZP_10340833.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas echinoides
ATCC 14820]
Length = 791
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/752 (41%), Positives = 443/752 (58%), Gaps = 59/752 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V +G + + +ETG + RQA+GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVTTQWGGKTLTLETGRVARQANGAVMATLGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E ++ VLSYDG +
Sbjct: 66 KYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ +S VP I RVG V ++++NPT ++++ LDL++A + +A
Sbjct: 126 PDVLAMVAASAALTISGVPFMGPIGAARVGYVDGEYVLNPTLDQVKEGDLDLVVAATGEA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E LSEE+++ AVQ A RE N + L E K +
Sbjct: 186 VMMVESEAKELSEEVMLGAVQFAHKACREAVNLIIDLAEQAAKDPWEMAAQADLSAAKDK 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++++ G+++ ++ +K R L++ K
Sbjct: 246 LKKLIGKDIAAAYKVTDKSERSNLLNAARAKA---------------------------- 277
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+E D P+ + + L +++ ++V R I++ G+R
Sbjct: 278 ----KEAFADA---------APQDQMAAQKLVKKLEAEIV---------RGAILKDGQRI 315
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI + LPRAHGSALFTRGETQS+ TLG K Q ID L + +
Sbjct: 316 DGRTTTQIRPIEAIVHFLPRAHGSALFTRGETQSICTTTLGTKDAEQMIDGL-TGLSYEN 374
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS ++FPYTIRV S ITESN
Sbjct: 375 FMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTIRVLSDITESN 434
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F +LSDI G ED G
Sbjct: 435 GSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKKFA------VLSDILGDEDHLG 488
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GIT QMDIK+ GIT +M+KAL+QAK+GR HIL EM K LS
Sbjct: 489 DMDFKVAGTEAGITTMQMDIKIAGITEEIMRKALEQAKEGRAHILGEMNKALSSTRTELS 548
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP I +++ KI +IG+GGK ++ I+ +TG + +D +D+G +KI++ D + +E +
Sbjct: 549 AHAPRIETLQIDKSKIREVIGTGGKVIREIVAQTGAK-VDIDDEGLIKISSSDTAQIEAA 607
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I + VG +Y + ++ ++ +G FV G++GL H+SE+ + + K DV+K
Sbjct: 608 IKWIKGIVEEAEVGKVY-DGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVADVLK 666
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E AE
Sbjct: 667 EGQDVKVKVLEIDPRGKVRLSMRVVDQETGAE 698
>gi|253991498|ref|YP_003042854.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
gi|211638376|emb|CAR66998.1| polyribonucleotide nucleotidyltransferase (ec 2.7.7.8)
(polynucleotid phosphorylase) (pnpase) (cap87k)
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782948|emb|CAQ86113.1| polyribonucleotide nucleotidyltransferase [Photorhabdus
asymbiotica]
Length = 708
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 437/743 (58%), Gaps = 58/743 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G I +ETG M RQA+ AV V +T ++ +V DFFPL VNY
Sbjct: 4 PIVRKFQYGQHTIAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E LV RLIDRPLRP +GF +E QI++ V+S +
Sbjct: 64 QERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIVATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ALS +P + I RVG + D++++NPT+ E+++S+LDL+++G+
Sbjct: 124 VNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G D + + + + ALV GK K + EL+
Sbjct: 184 GAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALVAEAGKEKWDWAPEPINQELH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V +A L +I K R + ++++V+ L E
Sbjct: 244 DRVAALAESRLGDAYRITEKQERYAQVDVIKDEVIAALLEQ------------------- 284
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
D +DE ++H + + +R R++ G
Sbjct: 285 -----------DEALDEAEIH-------------------EILGNLEKNVVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGE-RT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+FPP SVGE G IG+P RREIGHG LA+R + V+P N+FPYT+RV S ITE
Sbjct: 374 DRFLLHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ +G++A QMDIK+ GIT +M+ AL QAK R HIL+ M + P N
Sbjct: 488 LGDMDFKVAGSREGVSALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINCPRND 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ + I +T VG +Y ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 HAISRIEEITAEIEVGRVY-TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVADY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS 831
++VG V VK++EV+ +G++RLS
Sbjct: 666 LQVGQEVSVKVLEVDRQGRVRLS 688
>gi|395791475|ref|ZP_10470933.1| polyribonucleotide nucleotidyltransferase [Bartonella alsatica IBS
382]
gi|395408838|gb|EJF75448.1| polyribonucleotide nucleotidyltransferase [Bartonella alsatica IBS
382]
Length = 733
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T G TI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGGTIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IA RVG ++I+NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIASARVGYCNGQYILNPHIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E +++ AV G ++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAQELPENIMLGAVMFGHKGLQPVLDAIIKLAEVAAKDPR--DFVPEDLTDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A +++ K I +K R A+ +L+ +V+ N ++
Sbjct: 245 MLEMAEQDIRKAYTIADKQERYAAIDALKTEVI-----NKFI------------------ 281
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
P++ +S+ FS + VFK++ +K +R I++ +R
Sbjct: 282 ---------------------PETEESSE--FSADQIATVFKQLQAKIVRWNILDTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID+L + +
Sbjct: 319 DGRDLSTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGTYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKSGRIHILNEMSKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P +G IY+ +K+ A +G FV R+GL HIS+L+S + K D+VK
Sbjct: 611 KHWIHSIVDEPEIGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVIKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMK 692
>gi|352683782|ref|YP_004895766.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
intestini RyC-MR95]
gi|350278436|gb|AEQ21626.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
intestini RyC-MR95]
Length = 692
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/741 (41%), Positives = 443/741 (59%), Gaps = 59/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G R + +ETG + +QA+G+V + GET + +V D P E DFFPL V+++E+ A
Sbjct: 8 LGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLTVDFEEKMYAV 67
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF +REGR + +L RLIDRP+RP G++++ QI++ +S D + PD A
Sbjct: 68 GKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPDIPA 127
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S++P IAGVRVG V KFI+NPT ++ S++++ +AG+ +AILM+E
Sbjct: 128 MIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVAGTKEAILMVE 187
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SE++++ A+ G + ++++ + + GKPKM T +PP L K + E
Sbjct: 188 AGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPEALSKEIMEYG 247
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ L +K+ R K +S +E +L VE P+
Sbjct: 248 EPKIHDALMDPDKLHRDKMVSETKEAILE--------------HFVELYPE--------- 284
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
SE+D+ + +++ K R I R DGR
Sbjct: 285 ---------------------------SEIDIAHIVQKLVKKVFRHIITHDKIRPDGRAL 317
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D +RPIS GLL R HG +LFTRG+TQ L + L + AQ +D L ++ KR+ Y
Sbjct: 318 DEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQTLDGLGTE-LTKRYIHHY 376
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE + +P RREIGHG LAERAL PV+PS+ +FPYTIR+ S + ESNGSSSM
Sbjct: 377 NFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRLVSEVLESNGSSSM 436
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS C L+L DAGVPIK ++GVAMG+V + D+ IL+DI G EDA+GDMDFK
Sbjct: 437 ASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGDDI------TILTDIQGLEDANGDMDFK 490
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E GITA QMDIK+ GI + ++AL+QA+ GR +IL +ML+C P P SL +HAP
Sbjct: 491 VAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILGKMLECIPAPRPSLKEHAPK 550
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I +K+ P+KI +IG GGK +K I EE+G + ID E+DGTV + A D +S K+ I+
Sbjct: 551 ITTLKINPDKIKDVIGPGGKVIKKITEESGAK-IDIEEDGTVYVAAADQASANKAIEAIN 609
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+T P +G IY ++ + +G FVE PGREGL HIS+L+ + K EDVV VGD +
Sbjct: 610 AITAEPEIGKIYTG-KVTRLMNFGAFVEFMPGREGLVHISQLAKERVEKVEDVVNVGDEI 668
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
VKL+E++ KG++ LSR+A L
Sbjct: 669 VVKLVEIDAKGRMNLSRKAAL 689
>gi|206602200|gb|EDZ38682.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II '5-way CG']
Length = 713
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 322/761 (42%), Positives = 455/761 (59%), Gaps = 62/761 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEPSDFFPLNV 146
P+ V+ G + + +ETG M +QA G+V V DG +I T+V + V DF PL V
Sbjct: 2 NPIFVEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVA-SKVSKPGVDFLPLTV 60
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER AAG+ GGFFKREG+ + E+L RLIDRPLRP +GF+ +TQ+++ V+S D
Sbjct: 61 DYQERAYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISID 120
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
D +AV A+ A+ +S++P +A V+VG V FIVNPT E E S LDL++AG
Sbjct: 121 RGGISDVMAVVASSAALYVSDIPFLNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAG 180
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+ DAI+M+EG + +SEE + A+ + ++ + + L M GK K PP+
Sbjct: 181 TRDAIMMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAMPIPPK 240
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRR----KALSSLEEKVLTILSENGYVSKDETVGIVE 382
+ + VE + L + L+I K R+ + L + EK+L S
Sbjct: 241 VMEMVESMGASRLREALKIAVKQERQDQTAQILGDVREKILQEFSA-------------- 286
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
T P+ + +E E +F+ F E+ + +R
Sbjct: 287 TSPETVVEERE---------------------------IFN------AFHELERRIMREM 313
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I++ R+DGR IRPI+ G+LPR HGSALFTRGETQSL+V TLG QRID L
Sbjct: 314 ILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDAL 373
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
E + KRF L Y+FPP SVGE + P RREIGHG LAERAL+PVLP+ + FPY+IR+
Sbjct: 374 EGES-TKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDSFPYSIRL 432
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S I ESNGSSSMA+VCGG LA+ DAG+PIK ++AG+AMG++ + D ILSDI
Sbjct: 433 VSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIA------ILSDI 486
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKV G E+GITA QMDIK+ GIT+ +M++ALQ+A++GR +I+ +M
Sbjct: 487 LGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKMAL 546
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P N++S AP I +K+K +KI +IG GGK ++ I E+TG + I+ +D G ++I +
Sbjct: 547 PSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAK-IEIDDSGLIQIAST 605
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D + +K+ +I+ + VG IY +K++A YG FVE+ PG GLCHIS+L +
Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLG-RVKTVADYGAFVELFPGTTGLCHISQLEDRRV 664
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
K DVV GDL+ VK +EV+ +G++RLSR+ + E A+
Sbjct: 665 EKVSDVVSEGDLILVKALEVDRQGKIRLSRKEAIAEVGADR 705
>gi|241207064|ref|YP_002978160.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240860954|gb|ACS58621.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 712
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 446/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ P Y
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PADYS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL + +I K R A+ +++ KV
Sbjct: 240 ALETEMLGLAEGELREAYKITQKADRYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 ---------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|354581526|ref|ZP_09000430.1| polyribonucleotide nucleotidyltransferase [Paenibacillus lactis
154]
gi|353201854|gb|EHB67307.1| polyribonucleotide nucleotidyltransferase [Paenibacillus lactis
154]
Length = 697
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/748 (41%), Positives = 450/748 (60%), Gaps = 61/748 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNY 148
SV++ G R +++ETG + +QA+ AV V G+T + +C SEP D FFPL VNY
Sbjct: 4 SVEMQLGGRPLVLETGRLAKQANAAVMVRYGDTAV---LCTVTASSEPKDLDFFPLTVNY 60
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
+ER A G+ GGF KREGR + +L RL DRP+RP +GF ++ Q+L+ V+S D
Sbjct: 61 EERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD 120
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
P+ A+ A+++S+VP + I GV VG V F+VNPT E E S + L++AG+
Sbjct: 121 CEPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGNFVVNPTIAEQEASDIYLVVAGTK 180
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DAI+M+E + + EE++++A+ G + +++I +++ LV + GK KM + +
Sbjct: 181 DAIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAVAGKEKMEVKLHAVDENVN 240
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ V E A LV+ ++I+ K R+ A+ ++ E+ T+ E +ET P+LL
Sbjct: 241 REVREFAEARLVEAVRIEEKHARQDAIDAINEETYTVFEEK----------YIET-PELL 289
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+D VK V ++ + +RR I
Sbjct: 290 KD------------------------------------VKEVLHDIVKEEVRRLITHDKV 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR IRPI GLLPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E
Sbjct: 314 RPDGRGLSEIRPIECDTGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ET 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FPP SVGE + AP RREIGHG L ERAL V+P++ +FPYTIR+ S + E
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEAEFPYTIRLVSEVLE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGS+S AS+C LA+ DAGVPIK +AGVAMG++ D + IL+DI G ED
Sbjct: 433 SNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVS------ILTDIQGMEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG DG+TA QMDIK+ GI ++++ALQQAK+GR HIL +M++ P S
Sbjct: 487 LGDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMMEVIKEPRAS 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS++AP I M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + +
Sbjct: 547 LSQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASSNEEMNR 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
K+ II + VG+IY +K I +G FVEI P ++GL HIS+LS+ +AK EDV
Sbjct: 606 KALTIIEGIVKEVAVGEIYTGT-VKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVEDV 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALL 836
V +GD++ VK+ E++ +G++ LSR+A+L
Sbjct: 665 VAIGDVITVKVTEIDQQGRINLSRKAVL 692
>gi|303251556|ref|ZP_07337730.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252131|ref|ZP_07534030.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302649554|gb|EFL79736.1| polynucleotide phosphorylase/polyadenylase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860431|gb|EFM92445.1| Polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 715
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 445/748 (59%), Gaps = 58/748 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+
Sbjct: 2 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + D+F++NPTT E + S+LDL++AG+
Sbjct: 122 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTTSEQKISRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E D LSEE ++ AV G + + +K V+ GKP+ P L
Sbjct: 182 NKAVLMVESEADILSEEQMLSAVVFGHQQQQVVIENIKEFVKEAGKPRWDWVAPEPNTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A + +I K R + + +++ V+ L+ ++DET+
Sbjct: 242 INQVKALAEARIGDAYRITEKQARYEQIDAIKADVIAQLT-----TQDETIS-------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ++D + + S +R RI+ G
Sbjct: 289 -------EGAIID-----------------------------IITALESSIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEK 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 372 SDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P P
Sbjct: 486 HLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILSVMEQAIPAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++
Sbjct: 546 DISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAATDNNAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++ V IY+ ++ + +G FV I G+EGL HIS++++ + + D
Sbjct: 605 KAVMARIEDIVAEVEVNAIYKG-KVTRVVDFGAFVSILGGKEGLVHISQITNERVERVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 664 YLSVGQEVTVKVVEIDRQNRIRLTMKDL 691
>gi|13474634|ref|NP_106203.1| polynucleotide phosphorylase [Mesorhizobium loti MAFF303099]
gi|81778152|sp|Q98BI3.1|PNP_RHILO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|14025388|dbj|BAB51989.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium loti
MAFF303099]
Length = 715
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/745 (42%), Positives = 447/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET + +V P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP G+ ++TQI+ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP + G RVG + ++++NP EM++S+LDL++AG+ DA+
Sbjct: 127 DILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L EE+++ AV G + + + + L E+ K P+ D L
Sbjct: 187 LMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPR--DFTAPDYSALEGE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ +I G+EL +I +K R A+ +++ KV +
Sbjct: 245 MLKIVGDELSNAYKITDKQQRYAAVDAVKAKVKAAFAP---------------------- 282
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+GE +PK ++ + VFKE+ +K +R I++ G R
Sbjct: 283 --------AEGE--------EPK--------YTSEQIGSVFKELQAKVVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L V TLG + Q +D+L + ++
Sbjct: 319 DGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYK-EK 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS + FPYT+RV S ITESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GIT+ QMDIK+ GIT +MK AL QAKDGR+HIL EM L
Sbjct: 492 DMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHALTGARPELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I + P VG+IY +K+ A +G FV R+GL HIS+L++ +AK DVVK
Sbjct: 611 KKWIHTIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLANERVAKTSDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|148825487|ref|YP_001290240.1| polynucleotide phosphorylase/polyadenylase [Haemophilus influenzae
PittEE]
gi|187610272|sp|A5UAQ6.1|PNP_HAEIE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148715647|gb|ABQ97857.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
PittEE]
Length = 709
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 307/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ +V G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLASVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQLRYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|319896566|ref|YP_004134759.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
gi|317432068|emb|CBY80418.1| polyribonucleotide nucleotidyltransferase [Haemophilus influenzae
F3031]
Length = 709
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 442/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++ ++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQLVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAKFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEKEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI IIG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDIIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLIHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|146337231|ref|YP_001202279.1| polynucleotide phosphorylase [Bradyrhizobium sp. ORS 278]
gi|187470941|sp|A4YJF3.1|PNP_BRASO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146190037|emb|CAL74029.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 278]
Length = 719
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 323/746 (43%), Positives = 443/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P + DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKAPRDGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ VLS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ D + + K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPR--DVAIIDNSAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ IA ++L K I K R A+ +++EKV+ G
Sbjct: 244 EMLGIAEQDLRKAYAIAIKQERYAAVGAVKEKVMAYFFPEGQ------------------ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+PK + ++ V VFKE+ +K +R I++ G+R
Sbjct: 286 ---------------------EPK--------YDKLRVAAVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR A +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S +TES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEVTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA++GR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKALTAARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV R+GL HIS+L+ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGTRDGLVHISQLADKRVQKTTDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|302392342|ref|YP_003828162.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
DSM 5501]
gi|302204419|gb|ADL13097.1| polyribonucleotide nucleotidyltransferase [Acetohalobium arabaticum
DSM 5501]
Length = 708
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/751 (41%), Positives = 456/751 (60%), Gaps = 56/751 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K+ G R++ +ETG + +QA+G+V V GET+I + + D D+FPL +NY+ER
Sbjct: 7 KMELGGRELTLETGKLAQQANGSVLVRYGETVILVTATMDD--PRGMDYFPLMINYEERL 64
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+ G+ GGF KREGR + L RLIDRPLRP +G H+ Q+++ VLS D + P+
Sbjct: 65 YSVGKIPGGFIKREGRPSEAATLTSRLIDRPLRPLFPEGMRHDVQVIATVLSVDNDNSPE 124
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A A+++S++P I GV VGLV + I+NPT +E E+S LDL++AG+ D ++
Sbjct: 125 VAAMIGASAALSISDIPFEGPIGGVNVGLVDGELILNPTVEEQEESSLDLIVAGNKDGVM 184
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM-LDTIKLPPPELYKHV 331
M+E + ++E+ +I+A+ G ++ I + +V GK + L+ + + PE+ V
Sbjct: 185 MVESAANEVTEDKMIEAIDYGHQKLQGIIKLQEEMVAKIGKEEADLELVTVEDPEVEAAV 244
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E AGE+L + L K+K R + L ++E+V E D D+
Sbjct: 245 REYAGEDLKEALLTKDKAERGENLDQVKEEVK------------------EHFTDEFADD 286
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ EE K K ST ++T + +R +++ G+R D
Sbjct: 287 EGTEE--------------KMKVVSST------------LDKITKETIRSLVLDEGKRVD 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D +RPI +LPRAHGS +FTRG+TQ + V TLG QR+D +E E KR+
Sbjct: 321 GRDLDEVRPIWCEVDVLPRAHGSGIFTRGQTQVMTVATLGAVGDEQRLDGIEVK-ESKRY 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVGE G I P RREIGHG L ERAL P++P +DFPYTIR+ S + ESNG
Sbjct: 380 MHHYNFPSFSVGETGPIRGPGRREIGHGALGERALRPMIPEHDDFPYTIRLVSEVLESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+CG L+L DAGVPI+ +AG+AMG++ D+ +LSDI G ED +GD
Sbjct: 440 STSQASICGSTLSLMDAGVPIRKPVAGIAMGLMKKGDKVE------VLSDIQGIEDFNGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+EDGITA QMD+K+ GI+ ++ +AL+QA+ GR HIL +ML+ P + LS
Sbjct: 494 MDFKVAGSEDGITALQMDVKIKGISKDILAEALEQARQGRLHILDKMLEVMPESRDELSP 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M++ PEKI +IG GGK +K II+ETGV +D EDDGTV I A D S ++++
Sbjct: 554 YAPSIITMEIDPEKIRDVIGPGGKTIKKIIDETGVN-VDIEDDGTVFIAADDQESGKQAQ 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+++ +T VG+IY E+K + +G FVEI PG+EGL HISEL+ + + ED++ V
Sbjct: 613 QMVAKMTEDVEVGEIYLG-EVKRVTHFGAFVEILPGKEGLVHISELADYHVDEVEDLLTV 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD + VKL E++DK +L LSR+ L E + E
Sbjct: 672 GDEILVKLTEIDDKDRLNLSRKEALVERERE 702
>gi|430762367|ref|YP_007218224.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430011991|gb|AGA34743.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 694
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/740 (42%), Positives = 439/740 (59%), Gaps = 57/740 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + ETG + RQASGAV V +T++ +V DFFPL VNYQER AA
Sbjct: 9 YGNQTVTFETGGIARQASGAVLVNIADTVVLVTVVARKEADPGRDFFPLTVNYQERTYAA 68
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR + E L RLIDRPLRP +GF HETQI++ V+S + PD +A
Sbjct: 69 GKIPGGFFKREGRPNEKETLTSRLIDRPLRPLFPEGFKHETQIIATVMSINPEVDPDIVA 128
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S VP + I RVG ++++NPT E+ DSQLDL++AG+++A++M+E
Sbjct: 129 MLGASAALAVSGVPFAGPIGAARVGYRDGQYLLNPTASELPDSQLDLVVAGTENAVIMVE 188
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ AV G + ++ ++ L GKP T L V E+A
Sbjct: 189 SEASELSEEVMLGAVMYGHEQMQAAIQAIRELAADAGKPAWDWTAPETDDSLDVRVAEVA 248
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
LV+V Q+ K R + L+SL V+ ++ G DE
Sbjct: 249 RNALVEVYQVAEKQARTERLNSLRAGVVEQVATGG-------------------DEAPSA 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E V K F ++ + +R RI++G R DGR
Sbjct: 290 EAV-----------------------------KNAFHDLEYRIVRDRILDGNPRIDGRDT 320
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI+ + G+LPRAHGSA+FTRGETQ+L V TLG + AQ ID +E + +RF L Y
Sbjct: 321 RTVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERR-ERFMLHY 379
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP GE G +G P RREIGHG LA+R ++ V+P D+ FPY IRV S ITESNGSSSM
Sbjct: 380 NFPPYCTGETGMVGTPKRREIGHGRLAKRGVQAVMPKDDSFPYVIRVVSEITESNGSSSM 439
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCG LAL DAGVP+K +AG+AMG++ + D F +L+DI G ED GDMDFK
Sbjct: 440 ASVCGTSLALMDAGVPMKAPVAGIAMGLIKEADRFA------VLADILGDEDHLGDMDFK 493
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG DG+TA QMDIK+ GIT +M+ ALQQA+DGR HIL M + +S +AP
Sbjct: 494 VAGTRDGVTALQMDIKIDGITREIMETALQQARDGRLHILERMGEAISSHRTEMSSYAPR 553
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
M++ PEKI +IG GG ++++ EETG +ID DDG VKI + D ++ E+++ I
Sbjct: 554 FITMRINPEKIRDVIGKGGATIRALTEETGT-SIDISDDGIVKIASTDQAAGEEARRRIE 612
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
LT VG +Y +K I +G FV I PGR+GL HIS++S++ + D + GD V
Sbjct: 613 ELTADVEVGRVYSGRVVK-IMDFGAFVSILPGRDGLVHISQISNDRVENVTDFLNEGDSV 671
Query: 816 DVKLIEVNDKGQLRLSRRAL 835
VK++EV+ +G++RLS +A+
Sbjct: 672 TVKVLEVDKQGRIRLSMKAV 691
>gi|319779764|ref|YP_004139240.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317165652|gb|ADV09190.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 715
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 316/745 (42%), Positives = 446/745 (59%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET + +V P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP G+ ++TQI+ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFASGYKNDTQIVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP + G RVG + ++++NP EM++S+LDL++AG+ DA+
Sbjct: 127 DILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHVDEMQESKLDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L EE+++ AV G + + + + L E+ K P+ D L
Sbjct: 187 LMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPR--DFTAPDYSALEAE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ +I G+EL + +K R A+ +++ KV +
Sbjct: 245 MLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPA--------------------- 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E ED + ++ + VFKE+ +K +R I++ G R
Sbjct: 284 EGEDAK-------------------------YTSEQIGSVFKELQAKVVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L V TLG + Q +D+L + ++
Sbjct: 319 DGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYK-EK 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS + FPYT+RV S ITESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GIT+ QMDIK+ GIT +MK AL QAKDGR+HIL EM + L
Sbjct: 492 DMDFKVAGTANGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHALTGARSELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I + P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK DVVK
Sbjct: 611 KKWIHTIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLANDRVAKTSDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|402305152|ref|ZP_10824211.1| polyribonucleotide nucleotidyltransferase [Haemophilus sputorum HK
2154]
gi|400376265|gb|EJP29152.1| polyribonucleotide nucleotidyltransferase [Haemophilus sputorum HK
2154]
Length = 712
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/747 (41%), Positives = 440/747 (58%), Gaps = 58/747 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E LV RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGRIPGGFFKREGRPSEGETLVARLIDRPVRPLFPEGFFNEIQVIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTISEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K V GKP+ P +L
Sbjct: 183 KAVLMVESEADVLTEEQMLSAVVFGHQQQQVVIENIKEFVREAGKPRWDWVAPEPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ +A + +I K R + ++ +V+ L+ ++DETV
Sbjct: 243 NKVKALAEVRIGDAYRITEKQARYAQIDEIKAEVIATLT-----AEDETVS--------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++D + + S +R RI+ G
Sbjct: 289 ------EGAIID-----------------------------IITALESSIVRGRILAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + ++
Sbjct: 314 RIDGRTKDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGEKS 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE GRIG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPSAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDNF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKGARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGTVKIAATDNNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
A I ++ V +Y ++ + +G FV I G+EGL HIS+++ + + D
Sbjct: 606 AVMARIEDIVAEVEVNAVY-TGKVTRVVDFGAFVSILGGKEGLVHISQITDARVERVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ VG V VK++E++ + ++RL+ + L
Sbjct: 665 LTVGQEVQVKVVEIDRQNRIRLTMKDL 691
>gi|333375612|ref|ZP_08467420.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
23330]
gi|332970461|gb|EGK09453.1| polyribonucleotide nucleotidyltransferase [Kingella kingae ATCC
23330]
Length = 708
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/751 (42%), Positives = 450/751 (59%), Gaps = 62/751 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDIKEGQDFFPLTVDYFERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V + +++NPT Q++ SQLDL++AG++ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYVNNAYVLNPTKQQLSRSQLDLVVAGTEQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D L E++++ AV G + ++ + + L + P++ D K P +L V+E
Sbjct: 191 SEADILPEDVMLGAVVFGHEQMQTVITAINELAQEV-NPEVWDW-KAPEANTDLIAKVKE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I+G+ + + +I+ K R L DE VE
Sbjct: 249 ISGDLIAEAFKIRQKQARSAKL-------------------DEAWAAVEA---------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
V++ E D ++ ++K +FK + + +R +I+ G R DGR
Sbjct: 280 ---VLITEETDT----------------LAKNEIKGIFKNLEAAVVRGQILAGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HILA+M P LS+HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILAQMQTAVAGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ MK+ P+KI +IG GG+ ++SI ETG E I+ DDG V I A + E +KA
Sbjct: 553 PRLYTMKINPDKIREVIGKGGETIRSITAETGTE-INIADDGVVTIAATTAEAGEAAKAR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V I PG++GL HIS+++ + D ++VG
Sbjct: 612 IEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHERVKNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
V VK +EV+D+G++RLS +ALLP+ + +
Sbjct: 672 QTVSVKALEVDDRGRVRLSMKALLPQPEQQQ 702
>gi|410478615|ref|YP_006766252.1| polyribonucleotide nucleotidyltransferase [Leptospirillum
ferriphilum ML-04]
gi|406773867|gb|AFS53292.1| putative polyribonucleotide nucleotidyltransferase [Leptospirillum
ferriphilum ML-04]
Length = 713
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 323/761 (42%), Positives = 455/761 (59%), Gaps = 62/761 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEPSDFFPLNV 146
P+ V+ G + + +ETG M +QA G+V V DG +I T+V + V DF PL V
Sbjct: 2 NPIFVEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVA-SKVSKPGVDFLPLTV 60
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER AAG+ GGFFKREG+ + E+L RLIDRPLRP +GF+ +TQ+++ V+S D
Sbjct: 61 DYQERAYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISID 120
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
D +AV A+ A+ +S++P +A V+VG V FIVNPT E E S LDL++AG
Sbjct: 121 RGGISDVMAVVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAG 180
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM-LDTIKLPPP 325
+ DAI+M+EG + +SEE + A+ + ++ + + L M GK K L + +PP
Sbjct: 181 TRDAIMMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPP- 239
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
++ VE + L + L+I K R +E+ IL
Sbjct: 240 KVMDMVESMGAPRLREALKIAVKQER-------QEQTAQIL------------------- 273
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVH---IKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
GDV ++ S S M+ E ++ F E+ + +R
Sbjct: 274 --------------------GDVREKILQEFSASSPEMVVEEREIFNAFHELERRIMREM 313
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I++ R+DGR IRPI+ G+LPR HGSALFTRGETQSL+V TLG QRID L
Sbjct: 314 ILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDAL 373
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
E + KRF L Y+FPP SVGE + P RREIGHG LAERAL+PVLP+ + FPY+IR+
Sbjct: 374 EGES-TKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDSFPYSIRL 432
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S I ESNGSSSMA+VCGG LA+ DAG+PIK ++AG+AMG++ + D ILSDI
Sbjct: 433 VSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIA------ILSDI 486
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKV G E+GITA QMDIK+ GIT+ +M++ALQ+A++GR +I+ +M
Sbjct: 487 LGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMREALQKAREGRLYIMEKMKMAL 546
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P N++S AP I +K+K +KI +IG GGK ++ I E+TG + I+ +D G ++I +
Sbjct: 547 PSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAK-IEIDDSGLIQIAST 605
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D + +K+ +I+ + VG IY +K++A YG FVE+ PG GLCHIS+L +
Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLG-RVKTVADYGAFVELFPGTTGLCHISQLEDRRV 664
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
K DVV GDL+ VK +EV+ +G++RLSR+ + E A+
Sbjct: 665 EKVSDVVSEGDLILVKALEVDRQGKIRLSRKEAIAEVGADR 705
>gi|365878940|ref|ZP_09418390.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 375]
gi|365293161|emb|CCD90921.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Bradyrhizobium sp. ORS 375]
Length = 720
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 323/746 (43%), Positives = 443/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV + GET++ +V A P E DF PL V+YQE
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVASYGETVVLATVVAAKAPREGVDFLPLTVDYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + + +ETQ++ VLS+D +
Sbjct: 66 KAYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDSWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA A+ LS VP I RVG D++I+NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDIVALVAASAALTLSGVPFKGPIGAARVGFANDEYILNPTLDEMADTQLDLVVAGTSDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + N + L E K P+ D + + K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGHRHFQPVINAIIELAEKAAKDPR--DVAIIDNSAIEK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ IA ++L K I K R A+ +++EKV+ G
Sbjct: 244 EMLGIAEQDLRKAYAIAIKQERYAAVGAVKEKVMAYFFPEGQ------------------ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+PK + ++ V VFKE+ +K +R I++ G+R
Sbjct: 286 ---------------------EPK--------YDKLRVAAVFKELEAKIVRWNILDTGKR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR A +R I G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 317 IDGRDAKTVRNIVCEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDAL-SGTYKE 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT RV S +TES
Sbjct: 376 TFLLHYNFPPYSVGETGRLGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTTRVVSEVTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL DAGVP+K AG+AMG++L+ F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGSRFA------VLSDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT+ QMDIK+ GIT +M+ AL QA++GR HIL EM K L
Sbjct: 490 GDMDFKVAGTESGITSLQMDIKIEGITEEIMRVALGQAREGRIHILGEMSKALTNARAEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +++
Sbjct: 550 GEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGEAMKA 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I ++ P VG IY +K + +G FV R+GL HIS+L+ + K DVV
Sbjct: 609 AIKWIKSIASDPEVGQIYDGTVVK-VMEFGAFVNFFGTRDGLVHISQLADKRVQKTTDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K GD V VKL+ +D+G+ RLS + +
Sbjct: 668 KEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|227824763|ref|ZP_03989595.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
gi|226905262|gb|EEH91180.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus sp. D21]
Length = 703
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/741 (41%), Positives = 443/741 (59%), Gaps = 59/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G R + +ETG + +QA+G+V + GET + +V D P E DFFPL V+++E+ A
Sbjct: 19 LGGRPLTIETGKIAKQANGSVLIRYGETAVVVAVTGTDTPREGVDFFPLTVDFEEKMYAV 78
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF +REGR + +L RLIDRP+RP G++++ QI++ +S D + PD A
Sbjct: 79 GKIPGGFLRREGRPPETAILTSRLIDRPIRPMFPDGYHNDVQIVATAVSVDPDNAPDIPA 138
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S++P IAGVRVG V KFI+NPT ++ S++++ +AG+ +AILM+E
Sbjct: 139 MIGASCALSISDIPFEGPIAGVRVGRVDGKFIINPTLEQAAVSEMNVAVAGTKEAILMVE 198
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SE++++ A+ G + ++++ + + GKPKM T +PP L K + E
Sbjct: 199 AGAKEVSEQVMLDAILFGHEEIKKLVAFQEQIQAEVGKPKMEFTPYVPPEALSKEIMEYG 258
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ L +K+ R K +S +E +L VE P+
Sbjct: 259 EPKIHDALMDPDKLHRDKMVSETKEAILE--------------HFVELYPE--------- 295
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
SE+D+ + +++ K R I R DGR
Sbjct: 296 ---------------------------SEIDIAHIVQKLVKKVFRHIITHDKIRPDGRAL 328
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D +RPIS GLL R HG +LFTRG+TQ L + L + AQ +D L ++ KR+ Y
Sbjct: 329 DEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQTLDGLGTE-LTKRYIHHY 387
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE + +P RREIGHG LAERAL PV+PS+ +FPYTIR+ S + ESNGSSSM
Sbjct: 388 NFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRLVSEVLESNGSSSM 447
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS C L+L DAGVPIK ++GVAMG+V + D+ IL+DI G EDA+GDMDFK
Sbjct: 448 ASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGDDI------TILTDIQGLEDANGDMDFK 501
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E GITA QMDIK+ GI + ++AL+QA+ GR +IL +ML+C P P SL +HAP
Sbjct: 502 VAGTEKGITAIQMDIKIDGINRQIFEQALEQARKGRAYILGKMLECIPAPRPSLKEHAPK 561
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I +K+ P+KI +IG GGK +K I EE+G + ID E+DGTV + A D +S K+ I+
Sbjct: 562 ITTLKINPDKIKDVIGPGGKVIKKITEESGAK-IDIEEDGTVYVAAADQASANKAIEAIN 620
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+T P +G IY ++ + +G FVE PGREGL HIS+L+ + K EDVV VGD +
Sbjct: 621 AITAEPEIGKIY-TGKVTRLMNFGAFVEFMPGREGLVHISQLAKERVEKVEDVVNVGDEI 679
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
VKL+E++ KG++ LSR+A L
Sbjct: 680 VVKLVEIDAKGRMNLSRKAAL 700
>gi|342904999|ref|ZP_08726793.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21621]
gi|341952098|gb|EGT78639.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21621]
Length = 709
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 306/754 (40%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAKEAGKPRWDWVAPQLDTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEARLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS ++FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLSEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAIPAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G +Y+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAVYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V+VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVNVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|402819996|ref|ZP_10869563.1| hypothetical protein IMCC14465_07970 [alpha proteobacterium
IMCC14465]
gi|402510739|gb|EJW21001.1| hypothetical protein IMCC14465_07970 [alpha proteobacterium
IMCC14465]
Length = 718
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 316/745 (42%), Positives = 444/745 (59%), Gaps = 62/745 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R +++ETG + RQA GAV T G+T + +V P DFFPL VNYQE+
Sbjct: 8 EIDWGGRPLILETGRIARQADGAVLATYGDTTVLATVVADRSPKSGIDFFPLTVNYQEKT 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GG+FKREGR + E LV RLIDRP+RP +KGF +ETQ+++ VLS+D + D
Sbjct: 68 YAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVIATVLSHDLENDSD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A A+ +S VP I RVG ++I+NPT +EM+DS LDL++AG+ DA+L
Sbjct: 128 IVAMVAVSAALTISGVPFLGPIGAARVGFANGEYILNPTLEEMKDSNLDLVVAGTGDAVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSEE+++ AV G + + N + +L E C K P+ D + L + V
Sbjct: 188 MVESQAGELSEEVMLGAVMHGHREFQPVINAIISLAEKCAKEPR--DVPENNDDALKEKV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL-ED 390
IA +L Q +K R++ +++ ++KV+ DLL D
Sbjct: 246 AGIARGDLESAYQEADKSARQEKIAAAKDKVMA---------------------DLLPAD 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
D D + + G FK + S +R I++ +R
Sbjct: 285 ADADTAITLSG----------------------------AFKGLESDIVRGGILDTEKRI 316
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPRAHGSALFTRGETQ+L V TLG Q +D LE + +
Sbjct: 317 DGRGLADVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGDDEQLVDALEGTYK-EN 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G RREIGHG LA RA++P+LP+ DFPYT+R+ S ITESN
Sbjct: 376 FMLHYNFPPYSVGETGRVGFTGRREIGHGKLAWRAIKPMLPTAEDFPYTLRLVSEITESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LA+ DAGVP++ +AG+AMG++ + D F +LSDI G ED G
Sbjct: 436 GSSSMATVCGASLAMMDAGVPLQKPVAGIAMGLIKEGDRFA------VLSDILGDEDHLG 489
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +DGIT+ QMDIK+ GIT +M+ AL QAK GR HIL EM +
Sbjct: 490 DMDFKVAGTQDGITSLQMDIKITGITEEIMQVALTQAKGGREHILGEMASALGEARTEMG 549
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP I +K+ +KI +IGSGGK ++ I+E TG + ID DDGT+K+ + D + ++ +
Sbjct: 550 EYAPKIETIKIAQDKIREVIGSGGKVIREIVETTGAK-IDISDDGTIKVASSDAAVIQAA 608
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I+++ P VG IY +K++ +G FV R+GL HIS+L+ + D+VK
Sbjct: 609 IEWINSIAAEPEVGVIYEGTVVKTM-DFGAFVNFFGKRDGLVHISQLADRRVENTTDIVK 667
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +D+G++RLS + +
Sbjct: 668 EGDTVKVKLMGFDDRGKVRLSMKVV 692
>gi|395783580|ref|ZP_10463429.1| polyribonucleotide nucleotidyltransferase [Bartonella melophagi
K-2C]
gi|395425702|gb|EJF91862.1| polyribonucleotide nucleotidyltransferase [Bartonella melophagi
K-2C]
Length = 733
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/745 (42%), Positives = 455/745 (61%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+FKRE R ++E+L+ RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAVGKIPGGYFKRESRPSENEILISRLIDRPIRPLFVDGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IAG RVG ++++NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAMIASSAALTLSGIPFVGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ D I +L
Sbjct: 187 LMVESEAQELPEDVMLGAVIFGQKGFQPVIDAIIKLAEVAAKEPR--DFIPEDLSDLETT 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+ ++L K I +K R A+ +++ +V+ + ++S ET G E
Sbjct: 245 MLEMVEKDLQKAYTITDKQERHAAIDAIKAEVV-----DKFMS--ETEGNCE-------- 289
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
F+ + VFK + +K +R+ I++ G+R
Sbjct: 290 -------------------------------FNADKIATVFKHLRAKIVRQNILDTGKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPRAHGSALFTRGETQ+L + TLG + Q ID+L + +
Sbjct: 319 DGRTLSTVRSIQSEVGILPRAHGSALFTRGETQALVIATLGTSEDEQYIDSLTGTYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GRI +P RREIGHG LA RA+ P+LP+ + FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRISSPGRREIGHGKLAWRAIHPILPTKDSFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F ILSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------ILSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GIT+ QMDIK+ GIT +MK AL+QAKDGR HIL EM K + LS
Sbjct: 492 DMDFKVAGTKNGITSLQMDIKIDGITEEIMKIALEQAKDGRIHILNEMSKALTSARDELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+P I ++ + +KI +IGSGGK ++ I+E+TG + I+ ED+G +KI + D ++E +
Sbjct: 552 VFSPRIEMINIPVDKIRDVIGSGGKVIREIVEQTGAK-INIEDNGAIKIASTDAKAIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P G IY+ +K+ A +G FV R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPETGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVQKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKIRLSMKVV 694
>gi|386758393|ref|YP_006231609.1| polynucleotide phosphorylase [Bacillus sp. JS]
gi|384931675|gb|AFI28353.1| polynucleotide phosphorylase [Bacillus sp. JS]
Length = 705
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + D+FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++ + G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEGIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ ++ V V+K EDE+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEVKSAV---------VAK-------------FEDEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K + S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KQVKQILS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSRYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ D S +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTDESGNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|451966448|ref|ZP_21919701.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda NBRC
105688]
gi|451314749|dbj|GAC65063.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda NBRC
105688]
Length = 707
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/753 (42%), Positives = 443/753 (58%), Gaps = 62/753 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P K +G + +ETG M RQA+ AV VT +T ++ +V A E DFFPL VNY
Sbjct: 4 PTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 64 QERAYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS +P + I RVG + D++++NPT E++ S+LDL++AG+D
Sbjct: 124 VSPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTD 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
+A+LM+E D LSE+ ++ AV G D + + +KAL GKP+ + L
Sbjct: 184 NAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQ 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ V E+A L + I K R + ++E V I DLL
Sbjct: 244 QRVSEMAEARLGEAYHITEKQARYAKVDEIKESV---------------------IADLL 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+ D +D G++ + + +R R++ G
Sbjct: 283 AE---------DASLDAGEI-------------------SDILGALEKSVVRGRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 315 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-RT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S ITE
Sbjct: 374 DRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P
Sbjct: 488 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINAPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 HAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
+++G V VK++EV+ +G++RLS + EA+A
Sbjct: 666 LQMGQEVAVKVLEVDRQGRVRLS----IKEANA 694
>gi|404493180|ref|YP_006717286.1| polynucleotide phosphorylase/polyadenylase [Pelobacter carbinolicus
DSM 2380]
gi|123574179|sp|Q3A4A1.1|PNP_PELCD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77545244|gb|ABA88806.1| polyribonucleotide nucleotidyltransferase [Pelobacter carbinolicus
DSM 2380]
Length = 699
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 447/748 (59%), Gaps = 59/748 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+ F + + +ETG M RQA GAV V+ G T + + A E FFPL VNYQE+
Sbjct: 6 VECQFNGQTLTLETGKMARQADGAVVVSFGGTKVLCTAVSAKQMREGQSFFPLTVNYQEK 65
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F A G+ G FF+RE + E LVCRLIDRPLRP KG+ ETQI+ V+S D + P
Sbjct: 66 FYAGGKIPGSFFRRERGATERETLVCRLIDRPLRPLFPKGYMFETQIMPTVISVDEQNDP 125
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A A+A+S++P +A VRVG V I NPT ++ +S +D++++GS DAI
Sbjct: 126 DTLAMVGASAAIAVSDIPFDGPVAAVRVGRVEGNLIANPTIEQRAESDMDIIVSGSRDAI 185
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+EG F+SE+ ++ A+ +A++ + + LV++ GK K ++ P + + V
Sbjct: 186 IMVEGETRFISEQEMLDALFFAHEAIQPLIDVQLELVKIAGKEKREFSVPEIDPAVVEKV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+A L + ++I+ K R A++ ++ ++L ET+ ED+
Sbjct: 246 AELAETRLSEAVKIRTKQDRYAAVAEIKTEIL------------------ETLAADFEDQ 287
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++D + F + + +R+ + R D
Sbjct: 288 EDD--------------------------------ISEAFGNLQKRLVRQMVARDKVRID 315
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + IRPI+ GLLPRAHGSALFTRGETQ+L LG + QR+DN++S E K+F
Sbjct: 316 GRDKNTIRPITCEIGLLPRAHGSALFTRGETQALVAAALGTSKDEQRMDNVQSM-EFKKF 374
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP VGE P RREIGHG LAER++ VLP+ +DFPYT+RV S I ESNG
Sbjct: 375 MLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSIAQVLPNHDDFPYTLRVVSDILESNG 434
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG LAL DAGVP+ ++AG+AMG++ + D+ ++LSDI G ED GD
Sbjct: 435 SSSMASVCGASLALMDAGVPVSEAVAGIAMGLIKEGDDI------VVLSDILGDEDHLGD 488
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKV G +GITA QMDIK+ G++ +M++AL+QA++GR HIL +M + P + LS
Sbjct: 489 MDFKVTGTREGITALQMDIKIKGVSKEIMQQALEQAREGRLHILDKMAEAITAPRSDLSP 548
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I ++VKP+++ +IG GGK V+ IIE TG AID EDDG + I + D + + +
Sbjct: 549 YAPRITTIQVKPDQVRTVIGPGGKNVRGIIEATGC-AIDIEDDGRINIASADGDACKAAI 607
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+I NLT VG +Y +K I +G FVEI PG EGL HISEL+ + K D+++
Sbjct: 608 KMIRNLTQEAVVGKLYM-ATVKKIMEFGAFVEIFPGTEGLVHISELAKERVKKVTDILQE 666
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEA 839
GD V VK ++++ +G+++LSR+ L ++
Sbjct: 667 GDQVLVKCLDIDRQGKIKLSRKEALGQS 694
>gi|424879467|ref|ZP_18303099.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392515830|gb|EIW40562.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 712
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 312/750 (41%), Positives = 446/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVATSAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ P Y
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQ------PADYS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL + +I K R A+ +++ KV
Sbjct: 240 ALETEMLGLAEGELREAYKITQKADRYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 ---------------------KAHFLPEEGEAR---YTAEEVGAIFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|387769310|ref|ZP_10125574.1| polyribonucleotide nucleotidyltransferase [Pasteurella bettyae CCUG
2042]
gi|386906943|gb|EIJ71664.1| polyribonucleotide nucleotidyltransferase [Pasteurella bettyae CCUG
2042]
Length = 712
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/756 (41%), Positives = 444/756 (58%), Gaps = 61/756 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL V+Y
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVKEGQDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF +E QI++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ITPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMTEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K GK + P L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAAEAGKARWDWVAPEPDTALI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLT-ILSENGYVSKDETVGIVETIPDL 387
V+ IA L +I K R + + +L+ +V+ I +EN
Sbjct: 243 NQVKAIAESRLGDAYRITEKQVRYEQIDALKAEVIAQITAENE----------------- 285
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EV EG + +D+ F + S+ +R RI+ G
Sbjct: 286 --------------EVSEGKI----------------IDI---FTSLESQIVRGRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQSLAV TLG ++ AQ +D L + +
Sbjct: 313 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVATLGTERDAQILDELTGERQ 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE GRIG+P RREIGHG LA+R + V+PS ++FPY +RV S IT
Sbjct: 373 -DTFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVAAVMPSISEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 486 HLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAISAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D S++
Sbjct: 546 EISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDGSAV 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ A I +T G IY ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 605 KQVMARIEEITAEVETGAIY-TGKVTRLADFGAFVAILGNKEGLVHISQIAEERVEKVSD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
+ VG V VK++E++ +G++RL+ + L P+A+ +
Sbjct: 664 YLAVGQEVQVKVVEIDRQGRIRLTMK-LAPKAEVQE 698
>gi|383643511|ref|ZP_09955917.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas elodea
ATCC 31461]
Length = 780
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/752 (41%), Positives = 436/752 (57%), Gaps = 57/752 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V I +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+FSAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E ++ VLSYDG +
Sbjct: 66 KFSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSYDGENE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS VP I RVG + ++I+NPT ++ + +LDL++A + DA
Sbjct: 126 PDILSMIAASAALTLSGVPFMGPIGAARVGYINGEYILNPTDAQVAEGELDLVVAATYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E LSEE+++ AV DA RE+ + L E K + +L
Sbjct: 186 VMMVESEAKELSEEVMLGAVLFAHDACREVVKAIVKLAEQAAKDPWEIASQDDNAKLKDK 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++++ G+++ ++ +K R AL+ K +E+G ++ GI T
Sbjct: 246 IKKLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFTEDGLSPQEVMAGIKLT------- 298
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
K++ ++ +R I++ G+R
Sbjct: 299 -----------------------------------------KKLEAEIVRTAILKDGKRI 317
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI + LPRAHGSALFTRGETQ++A TLG K Q ID L +
Sbjct: 318 DGRTTTQIRPIEAETHFLPRAHGSALFTRGETQTIATCTLGTKDAEQMIDGLNGLS-YQS 376
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS DFPYTIR+ S ITESN
Sbjct: 377 FMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKEDFPYTIRLTSDITESN 436
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGG LA+ DAGVPIK ++G+AMG++L+ ++ ILSDI G ED G
Sbjct: 437 GSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYA------ILSDILGDEDHLG 490
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG GIT QMDIK+ GIT + + AL QAK GR HIL EM K + LS
Sbjct: 491 DMDFKVAGTAQGITTMQMDIKIAGITKEIFEAALNQAKAGRAHILGEMNKALGEVRSELS 550
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP I + KI +IG+GGK ++ I+ TG + +D +D+G +K+++ D + +E +
Sbjct: 551 AHAPRIETFTIDKSKIREVIGTGGKVIREIVATTGAK-VDIDDEGVIKVSSSDPAQIEAA 609
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I L VG IY ++ ++ +G FV G++GL H+SE+ + + K DV+
Sbjct: 610 IKWIKGLVEEAEVGKIY-TGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVSDVLS 668
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E AE
Sbjct: 669 EGQEVKVKVLEIDPRGKVRLSMRVVDQETGAE 700
>gi|424873085|ref|ZP_18296747.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393168786|gb|EJC68833.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 712
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/750 (42%), Positives = 447/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKAGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ P Y
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVLDAIIKLAEVAAKEPRDFQ------PADYS 239
Query: 330 HVEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E +A EL + +I K R A+ +++ KV +P
Sbjct: 240 ALETEMLGLAEGELREAYKITQKADRYAAVDAVKAKVKA-----------------HFLP 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
+ EG+ P+ +V +FK + +K +R I++
Sbjct: 283 E------------------EGEARYTPE------------EVGAIFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRNLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKITGITEEIMKVALGQAQGGRVHILGEMSKAITES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|49475022|ref|YP_033063.1| polynucleotide phosphorylase [Bartonella henselae str. Houston-1]
gi|81648398|sp|Q6G5F8.1|PNP_BARHE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49237827|emb|CAF27022.1| Polyribonucleotide nucleotidyltransferase [Bartonella henselae str.
Houston-1]
Length = 733
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/743 (42%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTLETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPSENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++I+NP EM +S+LDL++AG+++A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMSESKLDLVVAGTENAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G ++ I + + L E+ K P+ D + +L
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGLQPILDAIIKLAEVAAKDPR--DFVPEDLSDLETA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A +++ K I +K R AL +L+ E I + +
Sbjct: 245 MLEMAEKDIRKAYTITDKQERYAALDALK---------------------TEIINKFMPE 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ED + VD + VFK++ +K +R I++ +R
Sbjct: 284 TEEDCKFSVD-------------------------QIATVFKQLQAKIVRSNILDTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID+L + +
Sbjct: 319 DGRDLSTVRPIQSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYIDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRAIHPMLPSKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K LS
Sbjct: 492 DMDFKVAGTANGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IG+GGK ++ I+E+TG + I+ EDDGT++I + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGTGGKVIREIVEQTGAK-INIEDDGTIRIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L++ + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGVIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLTTERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|395764551|ref|ZP_10445177.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. DB5-6]
gi|395414378|gb|EJF80821.1| polyribonucleotide nucleotidyltransferase [Bartonella sp. DB5-6]
Length = 733
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 316/752 (42%), Positives = 449/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKNPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+ KRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 LYAVGKIPGGYLKRENRPTESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPR--DFVPEDLSDLEKT 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A + + K I +K R A+ +L+ +V+ + IP+ E+
Sbjct: 245 MLEMAEQNIRKAYTITDKQERYAAIDALKAEVIN-----------------KFIPETEEN 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ +R
Sbjct: 288 -----------------------------CKFSTDQIATVFKQLQAKIVRGNILDTQKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LPS FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPSKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QA+ GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQARGGRIHILNEMSKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIAVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VKL+ +++G++RLS + + + AE
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKIVDQQTGAE 701
>gi|162452817|ref|YP_001615184.1| polynucleotide phosphorylase/polyadenylase [Sorangium cellulosum So
ce56]
gi|187611292|sp|A9F8Z2.1|PNP_SORC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161163399|emb|CAN94704.1| polynucleotide phosphorylase [Sorangium cellulosum So ce56]
Length = 757
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 314/748 (41%), Positives = 445/748 (59%), Gaps = 57/748 (7%)
Query: 97 GDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNYQERFSAA 155
G R + +ETG + +QA GAV VT G+T++ + D P DFFPL + E+ AA
Sbjct: 10 GGRALTLETGRLAKQAHGAVLVTYGDTMVLVTAVSQD--ERPGLDFFPLTCEFVEKTYAA 67
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKRE R ++ E+L RL+DRPLRP +GF +TQI++ VLS D + D LA
Sbjct: 68 GKIPGGFFKREARQREEEILSSRLMDRPLRPLFPEGFKRDTQIIATVLSSDKQNKADVLA 127
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+T A A+ +S++P + GVRVG + +F+ PT ++E +DL++A S DAI+M+E
Sbjct: 128 LTGASAALHISDIPWHGPVVGVRVGRLDGEFVAYPTVADIERCDIDLVVACSRDAIVMVE 187
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
G +E +I A+ + + + + ++ + GKPK P E+ + V +I
Sbjct: 188 GGAAEATEAEIIDALMFAHETAQPVIDLIEKMRAAVGKPKREFVAPALPDEIKRRVAQIV 247
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E+L ++ +K R SSL++K+ LS +G + +P
Sbjct: 248 DEDLKAATKVTDKKARYDGYSSLKKKLTETLSAE--------LGAEKLLP---------- 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ G V K F+E + +R + E GRR DGR
Sbjct: 290 ---LQGLV------------------------KAEFEERKAHVVRTYVTEEGRRIDGRDG 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
IRPI GLLPR HGSALF RGETQ++ TLG Q+ID L + KRFYL Y
Sbjct: 323 RSIRPIMCEVGLLPRVHGSALFQRGETQAIVTTTLGTSTDEQKIDGLMG-ETWKRFYLHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP S GE + P RREIGHG LAERAL ++P+ + FPYTIR+ S ESNGSSSM
Sbjct: 382 NFPPFSTGETKPLRGPGRREIGHGALAERALSRMIPAPDQFPYTIRIVSETLESNGSSSM 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
A+VCGGCL+L DAGVPIK +AG+AMG++++ +++ +LSDI G ED GDMDFK
Sbjct: 442 AAVCGGCLSLMDAGVPIKSPVAGIAMGLIMEGNKYA------VLSDILGDEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
V G G+TA QMDIK+ G++ ++ +AL QA++GR HIL +ML+ P LS++AP
Sbjct: 496 VCGTARGVTAIQMDIKIAGLSRQILAQALDQAREGRLHILGKMLETLPTTRPELSQYAPR 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I ++VKP++I LIIG GGK +K I+++TGV AID EDDGTV + + D +++++ II
Sbjct: 556 ITTVRVKPDQIRLIIGPGGKTIKGIVDQTGV-AIDVEDDGTVNVASADSDAVKRALDIIK 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
LT P VG Y+ +K I +G FVEI P +GL HISE++ + + EDVVK GD +
Sbjct: 615 GLTAEPEVGATYKGT-VKRITDFGAFVEILPNTDGLLHISEMAHTRVERVEDVVKEGDSL 673
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAEN 843
DVK++ V+ +G++RLSRR LLP + E
Sbjct: 674 DVKVLSVDREGKIRLSRRELLPLPEGEE 701
>gi|452752286|ref|ZP_21952029.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
JLT2015]
gi|451960362|gb|EMD82775.1| Polyribonucleotide nucleotidyltransferase [alpha proteobacterium
JLT2015]
Length = 793
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 326/760 (42%), Positives = 450/760 (59%), Gaps = 60/760 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+ +G + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE+
Sbjct: 21 VETQWGGETLTLETGRIARQADGAVLATLGETVVLCAVTAAKSVKEGQDFFPLTVHYQEK 80
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
FSAAGR GGFFKREGR +HE L RLIDRP+RP +GFY+E ++ V+SYDG++ P
Sbjct: 81 FSAAGRIPGGFFKREGRPTEHETLTSRLIDRPIRPLFPEGFYNEINVICQVMSYDGVNEP 140
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ +S VP IA RVG V ++++NP+ +++E S LDL+ AG+ DA+
Sbjct: 141 DVLAMVAASAALTISGVPFMGPIACGRVGYVDGEYVLNPS-RDLEGSSLDLVAAGTQDAV 199
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV + + + + + L E K P LD ++ +L +
Sbjct: 200 LMVESEAKELPEDIMLGAVMFAHEHGKGVIDAIIELAEKAAKDPWELDAVEDKSAKL-ET 258
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ + G++L +I NK R+ A+++ EK ++D DL E
Sbjct: 259 LRSVIGDDLASAYKITNKSQRQDAVNAAREK-----------ARDH-------FADLKES 300
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ P T +KLV K++ S +R+ I++ R
Sbjct: 301 D--------------------PAEYFGT--------LKLV-KKLESDIVRKAIIKDKTRI 331
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D +RPI + +LPR HGSALFTRGETQS+ TLG Q ID + +
Sbjct: 332 DGRTLDQVRPIEAEVAVLPRTHGSALFTRGETQSICTTTLGTADSEQMIDAIYGVSH-EH 390
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL VLPS +FPYTIRV S ITESN
Sbjct: 391 FLLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPSKEEFPYTIRVISDITESN 450
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL-DTDEFGGDGTPLILSDITGSEDAS 629
GSSSMA+VCGG LA+ DAGVP+K ++G+AMG++L D+ EF +LSDI G ED
Sbjct: 451 GSSSMATVCGGSLAMMDAGVPLKRPVSGIAMGLILEDSGEFA------VLSDILGDEDHL 504
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +GIT+ QMDIKV GIT +M+ AL QAK GR HIL M +
Sbjct: 505 GDMDFKVAGTSEGITSLQMDIKVAGITEEIMRVALDQAKGGRAHILERMEDALGGAREGV 564
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
SKHAP I M + +KI +IG+GGK ++ I+ ETG + +D EDDGT+KI++ + +E
Sbjct: 565 SKHAPRIETMTIPKDKIRDVIGTGGKVIREIVAETGAK-VDIEDDGTIKISSSNGDEIEA 623
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I + P VG IY ++ SI +G FV ++GL HISE+ + + K DV+
Sbjct: 624 AMNWIKGIVEEPEVGHIY-TGKVVSIVDFGAFVNFMGQKDGLVHISEIKNERVGKVTDVL 682
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
+ G V VK++ V+D+G++RLS R + E E + P
Sbjct: 683 EEGQEVKVKVLAVDDRGKVRLSMRVVDQETGEELEDTRPP 722
>gi|294634519|ref|ZP_06713054.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
gi|291092033|gb|EFE24594.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda ATCC
23685]
Length = 713
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 320/753 (42%), Positives = 443/753 (58%), Gaps = 62/753 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P K +G + +ETG M RQA+ AV VT +T ++ +V A E DFFPL VNY
Sbjct: 10 PTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNY 69
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 70 QERAYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQ 129
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS +P + I RVG + D++++NPT E++ S+LDL++AG+D
Sbjct: 130 VSPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTD 189
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
+A+LM+E D LSE+ ++ AV G D + + +KAL GKP+ + L
Sbjct: 190 NAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRWEWSAPEVNTALQ 249
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ V E+A L + I K R + ++E V I DLL
Sbjct: 250 QRVSEMAEARLGEAYHITEKQARYAKVDEIKESV---------------------IADLL 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+ D +D G++ + + +R R++ G
Sbjct: 289 AE---------DASLDAGEI-------------------SDILGALEKSVVRGRVLRGEP 320
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 321 RIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-RT 379
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S ITE
Sbjct: 380 DRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQEEFPYTVRVVSEITE 439
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 440 SNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEQDNF------VVLSDILGDEDH 493
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL+ M + P
Sbjct: 494 LGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAINAPRGD 553
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 554 ISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKAK 612
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 613 HAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 671
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
+++G V VK++EV+ +G++RLS + EA+A
Sbjct: 672 LQMGQEVAVKVLEVDRQGRVRLS----IKEANA 700
>gi|424867047|ref|ZP_18290860.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II 'C75']
gi|124515695|gb|EAY57204.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum rubarum]
gi|387222387|gb|EIJ76836.1| Polyribonucleotide nucleotidyltransferase [Leptospirillum sp. Group
II 'C75']
Length = 713
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 322/761 (42%), Positives = 455/761 (59%), Gaps = 62/761 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEPSDFFPLNV 146
P+ V+ G + + +ETG M +QA G+V V DG +I T+V + V DF PL V
Sbjct: 2 NPIFVEAVVGGKTVRLETGRMAKQADGSVVVWADGTVVIATAVA-SKVSKPGVDFLPLTV 60
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER AAG+ GGFFKREG+ + E+L RLIDRPLRP +GF+ +TQ+++ V+S D
Sbjct: 61 DYQERAYAAGKIPGGFFKREGKPSEREILNSRLIDRPLRPLFPEGFFFDTQLIASVISID 120
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
D +AV A+ A+ +S++P +A V+VG V FIVNPT E E S LDL++AG
Sbjct: 121 RGGISDVMAVVASSAALYVSDIPFMNPVAAVKVGCVDGTFIVNPTLDEQERSTLDLVVAG 180
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM-LDTIKLPPP 325
+ DAI+M+EG + +SEE + A+ + ++ + + L M GK K L + +PP
Sbjct: 181 TRDAIMMVEGQGNEISEETFLSAIDLAHKSILPLIEAQEKLRAMAGKEKRPLPAVPIPP- 239
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
++ VE + L + L+I K R +E+ IL
Sbjct: 240 KVMDMVESMGAPRLREALKIAVKQER-------QEQTAQIL------------------- 273
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVH---IKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
GDV ++ S S M+ E ++ F E+ + +R
Sbjct: 274 --------------------GDVREKILQEFSASSPEMIVEEREIFNAFHELERRIMREM 313
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I++ R+DGR IRPI+ G+LPR HGSALFTRGETQSL+V TLG QRID L
Sbjct: 314 ILDHKVRADGRGLSDIRPITIEVGILPRTHGSALFTRGETQSLSVATLGTSDDEQRIDAL 373
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
E + KRF L Y+FPP SVGE + P RREIGHG LAERAL+PVLP+ + FPY+IR+
Sbjct: 374 EGES-TKRFMLHYNFPPFSVGETKPMRGPGRREIGHGNLAERALKPVLPARDSFPYSIRL 432
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S I ESNGSSSMA+VCGG LA+ DAG+PIK ++AG+AMG++ + D ILSDI
Sbjct: 433 VSDILESNGSSSMATVCGGSLAMMDAGIPIKSAVAGIAMGLIKEGDRIA------ILSDI 486
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKV G E+GITA QMDIK+ GIT+ +M+++LQ+A++GR +I+ +M
Sbjct: 487 LGLEDHLGDMDFKVTGTENGITAVQMDIKITGITVELMRESLQKAREGRLYIMEKMKMAL 546
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P N++S AP I +K+K +KI +IG GGK ++ I E+TG + I+ +D G ++I +
Sbjct: 547 PSSRNNMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAK-IEIDDSGLIQIAST 605
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D + +K+ +I+ + VG IY +K++A YG FVE+ PG GLCHIS+L +
Sbjct: 606 DEVAAQKAIDMINQIVEEVQVGKIYLG-RVKTVADYGAFVELFPGTTGLCHISQLEDRRV 664
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
K DVV GDL+ VK +EV+ +G++RLSR+ + E A+
Sbjct: 665 EKVSDVVSEGDLILVKALEVDRQGKIRLSRKEAIAEVGADR 705
>gi|420242139|ref|ZP_14746214.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF080]
gi|398068460|gb|EJL59884.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. CF080]
Length = 710
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/749 (42%), Positives = 449/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLRLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+E++++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDHSELEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ +H E EL + +I K R A+ +++ KV
Sbjct: 245 MLQHFEA----ELREGYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 --------------------KAHFFPEGVE--PKYNAEV-IGAVFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTVEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR+HIL EM
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRKHILGEMANAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEVGAIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|410697463|gb|AFV76531.1| polyribonucleotide nucleotidyltransferase [Thermus oshimai JL-2]
Length = 714
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 329/772 (42%), Positives = 459/772 (59%), Gaps = 67/772 (8%)
Query: 79 LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP 138
+ +A P+ PQ + G R +++ETG +QASG+V V +T++ + ++ P +
Sbjct: 1 MPEATPNTPQAHRFQTEVGGRLLVLETGKYAKQASGSVLVRYADTVVLATAQASEEPIQ- 59
Query: 139 SDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQI 198
+DF PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE QI
Sbjct: 60 ADFLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQI 119
Query: 199 LSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDS 258
+ VLS D + PD L AA A+ LS++P IA VRVGL+G F++NPT QE+E+S
Sbjct: 120 IVTVLSADQKNPPDILGPIAASAALLLSDIPWQGPIAAVRVGLIGGSFVLNPTLQELEES 179
Query: 259 QLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLD 318
LDL++AGS +AILM+E + EE ++QA++ A+ I + +A+ + GKPKM
Sbjct: 180 ALDLVVAGSREAILMVEAGAGEVDEETMVQALEFAHRAMGPILDLQEAMAKALGKPKMAW 239
Query: 319 TIKLPPPELYKHVEEI----AGEE-LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVS 373
T PP L + +E+ A E L VLQ +K R +AL + +E +
Sbjct: 240 T---PPETLGEEEKEVLYRLALERGLSAVLQTASKGERSRALEAFKEAL----------- 285
Query: 374 KDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKE 433
I+E +P K P+ + + F+E
Sbjct: 286 ------ILEALP---------------------------KGEDGAPLEEKKPLYESAFEE 312
Query: 434 VTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDK 493
+ + LRR ++E GRR+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 313 IVRRELRRLVLEEGRRADGRGPKDLRPIWIEVDVLPRAHGSAIFTRGETQVLGTVTLGTG 372
Query: 494 QMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSD 553
+ Q ID+L DE F + Y+FPP S GEV R+ SRRE+GHG LA+RAL VLP +
Sbjct: 373 RDEQIIDDL-GIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPKE 431
Query: 554 NDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGD 613
DFPYTIRV + ESNGSSSMA+VC GCLAL DAGVPI+ +AGVAMG+V + D
Sbjct: 432 EDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRRPVAGVAMGLVWEGDR---- 487
Query: 614 GTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRH 673
+IL+DI G EDA GDMDFKVAG +GITA QMD KVGG+ V+K+AL QA++ R
Sbjct: 488 --AVILTDILGLEDALGDMDFKVAGTREGITALQMDNKVGGLPREVLKEALLQAREARLK 545
Query: 674 ILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTED 733
IL M + P P L AP I +KV +KI L+IG GGK V++ +EE GVE +D E+
Sbjct: 546 ILDLMEQVLPAPRPELKPFAPRILSLKVPVDKIGLVIGPGGKNVRA-LEELGVE-VDIEE 603
Query: 734 DGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCH 793
DGTV+I + D+++ EK+KA I LT VG+IY + I P+G F+ + PG EGL H
Sbjct: 604 DGTVRIYSSDMAAAEKAKAQIEALTREAKVGEIYEGT-VTKITPFGAFISLFPGTEGLLH 662
Query: 794 ISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
IS+++ + + ED +KVGD++ VK+ +++KG++ L R PE + + PP
Sbjct: 663 ISQVAPGRVERVEDHLKVGDVIKVKVHRIDEKGKIDLIR----PELEGKIPP 710
>gi|347735476|ref|ZP_08868338.1| polynucleotide phosphorylase/polyadenylase [Azospirillum amazonense
Y2]
gi|346921296|gb|EGY02070.1| polynucleotide phosphorylase/polyadenylase [Azospirillum amazonense
Y2]
Length = 709
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 320/748 (42%), Positives = 445/748 (59%), Gaps = 68/748 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ +G R++++ETG + RQA GAV T G+T++ + A DFFPL VNYQE+
Sbjct: 8 EMEWGGRKLVLETGKVARQADGAVIATYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + EVL RLIDRP+RP + GF +E Q++ VLS+D + PD
Sbjct: 68 FAAGKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFVDGFRNEVQVVCTVLSHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A A+ LS +P I G RVG +FI+NPT +++E + LDL++AG+ + +L
Sbjct: 128 IVAMIGASAALTLSGLPFLGPIGGARVGYKDGEFILNPTLEQVETTDLDLVVAGTQEGVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP-----EL 327
M+E LSEE++++AV G A + + N + L E K D LPPP L
Sbjct: 188 MVESEAKELSEEIMLKAVMFGHTAFQSVINLIIDLAEQAAK----DPWDLPPPAYDKAAL 243
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ E+ G ++ + K R +A+S+ ++K + L+ +G E VG
Sbjct: 244 KAKLNELVGADIRAAYTLTVKQERYEAISTAKKKAVEALTADG-AHTAEAVG-------- 294
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
ST FK++ + LR ++E G
Sbjct: 295 -----------------------------ST------------FKDLEADVLRGTVLETG 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR IRPI + G+LPRAHGS+LFTRGETQ+L V TLG Q Q +D LE +
Sbjct: 314 KRIDGRTTVDIRPIVAEVGVLPRAHGSSLFTRGETQALVVATLGTAQDEQIVDALEGEYR 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+R+ S IT
Sbjct: 374 -ENFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPLLPSKEAFPYTLRLVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D +LSDI G ED
Sbjct: 433 ESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKE------DTGVAVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E G+TA QMDIK+ IT +MK AL QAKDGR HIL EM K +
Sbjct: 487 HLGDMDFKVAGTEAGVTALQMDIKITSITEDIMKVALAQAKDGRLHILGEMAKAIGGARD 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+++++AP I ++ + EKI +IGSGGK ++ I+E+TG + ID EDDGTVK+ A D +
Sbjct: 547 AVNQNAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAK-IDIEDDGTVKVAAVDSKAS 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I + P +G+IY +K + +G FV R+GL HISELS +AK D
Sbjct: 606 DAAIKWIKGIVAEPELGEIYVGKVVK-VMDFGAFVNFLGARDGLVHISELSPQRVAKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
VV GD V VK++ +D+G+++LS + +
Sbjct: 665 VVNQGDEVKVKVLGFDDRGKVKLSMKVV 692
>gi|417845955|ref|ZP_12491970.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21639]
gi|341953662|gb|EGT80164.1| Polyribonucleotide nucleotidyltransferase [Haemophilus haemolyticus
M21639]
Length = 709
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 307/754 (40%), Positives = 442/754 (58%), Gaps = 58/754 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ + +G + +ETG + RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 63 QERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ LS VP + I RVG + ++F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALTLSGVPFNGPIGAARVGFIDNQFVLNPTMAEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K + GKP+ P +L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVVEAIKEFAKEAGKPRWDWVAPQPNTDLI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+ IA L +I K R + + +++ V+ ++
Sbjct: 243 NKVKAIAEASLGDAYRITEKQARYEQIDAIKADVIAQITA-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
EDE+ E +VD +F + S+ +R RI+ G
Sbjct: 283 EDEEISEGKIVD-----------------------------IFTALESQIVRGRIIAGEP 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQ- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+PS +FPY +RV S ITE
Sbjct: 373 DHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 LGDMDFKVAGTREGVTALQMDIKIEGITPEIMQIALNQAKSARMHILGVMEQAISAPRAD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP I+ MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++ +
Sbjct: 547 ISDYAPRIYTMKIDPKKIKDVIGKGGATIRSLTEETGT-SIDIDDDGTVKIAAVDSNAAK 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
I + G IY+ ++ +A +G FV I +EGL HIS+++ + K D
Sbjct: 606 NVMGRIEEIVAEVEAGAIYKG-KVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++VG V VK++E++ +G++RL+ + L P+ + E
Sbjct: 665 LQVGQEVTVKVVEIDRQGRIRLTMKDLAPKQETE 698
>gi|315497234|ref|YP_004086038.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
excentricus CB 48]
gi|315415246|gb|ADU11887.1| polyribonucleotide nucleotidyltransferase [Asticcacaulis
excentricus CB 48]
Length = 760
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 451/766 (58%), Gaps = 59/766 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R++ +ETG + RQA AV T GET + +V A P DFFPL VNYQE+
Sbjct: 19 IEWAGRKLTLETGRIARQADAAVLATYGETTVLATVVYARAPKPGQDFFPLTVNYQEKTF 78
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GG+FKREGR + E LV RLIDRP+RP +KGF +E Q++ VLS+D + PD
Sbjct: 79 AAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLSHDMENDPDI 138
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ LS VP I G RVG++ D++++NP+ +M++S LDL++AG+ DA++M
Sbjct: 139 LGMVAASAALTLSGVPFMGPIGGARVGVINDEYVLNPSLDQMKESALDLVVAGTQDALMM 198
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHVE 332
+E LSE+ ++ A+ ++ + + + L E K P + ++ ++
Sbjct: 199 VESEAQELSEDKMLGALMFAHAGMQPVIDAIIELAEHAAKEPFEFEAEDFS--DVVAKIK 256
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
++ G +++ K K R A+ ++K +L ++ E P+ E
Sbjct: 257 DLVGPDIIAAYAHKGKHERHAAVGEAKKKAAAVLVKS------------EENPEGYE--- 301
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
P +F FKE + LRR I++ G+R DG
Sbjct: 302 --------------------------PAIFGSA-----FKECEADVLRRDIIDHGKRVDG 330
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +R I S G+LPR HGSALFTRGETQ+L V TLG + Q ID LE + +RF
Sbjct: 331 RAVDKVRQIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYK-ERFL 389
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS +FPYT+RV S ITESNGS
Sbjct: 390 LHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSAEEFPYTLRVVSEITESNGS 449
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCG L+L DAGVP+K ++G+AMG++L+ D + +LSDI G ED GDM
Sbjct: 450 SSMATVCGTSLSLMDAGVPLKRPVSGIAMGLILEKDGYA------VLSDILGDEDHLGDM 503
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E GIT+ QMDIKV GIT +M KAL+QA +GR HIL EM K L +
Sbjct: 504 DFKVAGTELGITSLQMDIKVPGITEEIMTKALRQANEGRLHILGEMNKAISGAREELGEF 563
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I +K+ +KI +IGSGGK ++ I+E+TG + ID +DGT+KI A + S ++ ++
Sbjct: 564 APKIETIKIATDKIREVIGSGGKVIREIVEKTGAK-IDIGEDGTIKIAASEQSKIDAARD 622
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I ++ P +G IY+ +K + +G FV ++GL HIS++ + +AK DV+ G
Sbjct: 623 WIKSIASEPEIGAIYKGKVVK-VVDFGAFVNFFGAKDGLVHISQIKNEKVAKTSDVLSEG 681
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAA 858
D V VK + +D+G+ +LS + + E E+ KL +D A
Sbjct: 682 DEVKVKFLGFDDRGKTKLSMKVVDQET-GEDLTEKLAAEKAARDEA 726
>gi|209966184|ref|YP_002299099.1| polynucleotide phosphorylase/polyadenylase [Rhodospirillum centenum
SW]
gi|226702682|sp|B6IVG3.1|PNP_RHOCS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209959650|gb|ACJ00287.1| polyribonucleotide nucleotidyltransferase, putative [Rhodospirillum
centenum SW]
Length = 707
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 316/745 (42%), Positives = 442/745 (59%), Gaps = 69/745 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G R++++ETG + RQA GAV + G+T++ + A P DFFPL VNYQE+ AA
Sbjct: 11 WGGRKLVLETGKVARQADGAVWASYGDTVVLATAVAAKAPKPGVDFFPLTVNYQEKAFAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR + EVL RLIDRP+RP G+ +ETQ++ VLS+D + PD +A
Sbjct: 71 GKIPGGFFKREGRPTEKEVLTSRLIDRPIRPLFADGYRNETQVIVTVLSHDLENDPDIVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ +S +P I RVG +F++NPT +++E S LDL++AG+ + +LM+E
Sbjct: 131 MVATSAALTISGIPFLGPIGAARVGYKDGQFVLNPTLEQVEASDLDLVVAGTTEGVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK-----H 330
L E++++ AV G + + + + L EM K D + +P P K
Sbjct: 191 SEAKELPEDVMLGAVMFGHREFQPVIDLIIDLAEMAAK----DPMAIPAPAYDKDAVKTR 246
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ + G+++ + + K R A+ + + K L
Sbjct: 247 MAALIGQDVRQAYTLTVKQERYAAIGAAKLKAL--------------------------- 279
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E +V +G E V VFKE+ S LR ++E G+R
Sbjct: 280 ----ETMVAEGTAPEA--------------------VASVFKELESDILRGSVIETGKRI 315
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI S+ G+LPRAHGSALFTRGETQ+L V TLG Q Q +D LE + +
Sbjct: 316 DGRTTVDIRPIVSQVGVLPRAHGSALFTRGETQALVVATLGTNQDEQIVDALEGEYR-ES 374
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIRV S ITESN
Sbjct: 375 FMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVRPLLPTKETFPYTIRVVSEITESN 434
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG L++ DAGVP+ +AG+AMG++ + ++F +LSDI G ED G
Sbjct: 435 GSSSMATVCGSSLSMMDAGVPLPRPVAGIAMGLIKEGEKFA------VLSDILGDEDHLG 488
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E G+TA QMDIK+ IT +MK AL QAKDGR HIL+EM K +++
Sbjct: 489 DMDFKVAGTEKGVTALQMDIKITSITEEIMKIALAQAKDGRVHILSEMNKALNTAREAVN 548
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP I ++ + +KI +IGSGGK ++ I+E+TG + ID EDDGTVK+ A D + E +
Sbjct: 549 QNAPRITVINIPKDKIRDVIGSGGKVIREIVEQTGAK-IDIEDDGTVKVAAVDGKASEAA 607
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I + P VG+IY +K I +G FV R+GL HISEL + +AK DVVK
Sbjct: 608 IKWIKGIVAEPEVGEIYEGKVVK-IMDFGAFVNFLGSRDGLVHISELKNERVAKVTDVVK 666
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VK++ +D+G+++LS + +
Sbjct: 667 QGDAVKVKVLGFDDRGKVKLSMKVV 691
>gi|433771430|ref|YP_007301897.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
australicum WSM2073]
gi|433663445|gb|AGB42521.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
australicum WSM2073]
Length = 715
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 318/745 (42%), Positives = 444/745 (59%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET + +V P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP G+ ++TQI+ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAAGYKNDTQIVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP I G RVG + ++++NP EM++S+LDL++AG+ DA+
Sbjct: 127 DILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHVDEMQESKLDLIVAGTTDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L EE+++ AV G + + + + L E+ K P+ D L
Sbjct: 187 LMVESEAKELGEELMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPR--DFTAPDYSALEAE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ +I G+EL + +K R A+ +++ KV +
Sbjct: 245 MLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPA--------------------- 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E ED + ++ + VFKE+ +K +R I++ G R
Sbjct: 284 EGEDAK-------------------------YTSEQIGSVFKELQAKVVRWNILDTGARI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L V TLG + Q +D+L + ++
Sbjct: 319 DGRDLSTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYK-EK 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS + FPYT+RV S ITESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM L
Sbjct: 492 DMDFKVAGTEGGITSLQMDIKIDGITEEIMKIALGQAKDGRLHILGEMSHALTGARPELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I + P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK DVVK
Sbjct: 611 KKWIHTIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLANDRVAKTSDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|365966470|ref|YP_004948032.1| LOW QUALITY PROTEIN: polynucleotide phosphorylase/polyadenylase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|365745383|gb|AEW76288.1| LOW QUALITY PROTEIN: polynucleotide phosphorylase/polyadenylase
[Aggregatibacter actinomycetemcomitans ANH9381]
Length = 743
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/758 (40%), Positives = 445/758 (58%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ + +G + +ETG + RQA+ AV + +T ++ +V S F P++ N
Sbjct: 36 NPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKRCERRSGFLPIDRN 95
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF++E Q+++ V+S +
Sbjct: 96 YQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFFNEIQVVATVVSVNP 155
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I RVG + +F++NPT E + S+LDL++AG+
Sbjct: 156 QISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINGQFVLNPTMNEQKQSRLDLVVAGT 215
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D L+EE ++ AV G + + +K LV GKP+ P L
Sbjct: 216 DKAVLMVESEADILTEEQMLAAVVYGHQQQQVVIEAIKELVAEAGKPRWDWVAPEPNTAL 275
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I K R + + +++ V+ ++
Sbjct: 276 INKVKALAEARLGDAYRITEKQSRYEQIDAIKADVIAQITA------------------- 316
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDEEV SE + +F + S+ +R RI+ G
Sbjct: 317 -----EDEEV-------------------------SEGKIIDIFTALESQIVRGRIIAGE 346
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ AQ ID L + +
Sbjct: 347 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDEL-TGER 405
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 406 SDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYVVRVVSEIT 465
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 466 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 519
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P P
Sbjct: 520 HLGDMDFKVAGTREGVTALQMDIKIEGITAEIMQIALNQAKSARMHILGVMEQAIPAPRA 579
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGTVKI A D +++
Sbjct: 580 DISDFAPRIYTMKIDPKKIKDVIGKGGAVIRALTEETGT-SIDIDDDGTVKIAAVDKNAV 638
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ A I ++T VG Y+ I+ +A +G FV I +EGL HIS+++ + K D
Sbjct: 639 QDVMARIEDITAEVEVGATYKGKVIR-LADFGAFVAIVGNKEGLVHISQIAEERVEKVSD 697
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
++VG V VK++E++ +G++RL+ + L+P+ D P
Sbjct: 698 YLQVGQEVMVKVVEIDRQGRIRLTMKDLVPKQDTVQQP 735
>gi|90422008|ref|YP_530378.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisB18]
gi|122477503|sp|Q21C27.1|PNP_RHOPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|90104022|gb|ABD86059.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisB18]
Length = 715
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 319/749 (42%), Positives = 445/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A E DF PL V+Y E
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKSAKEGVDFLPLTVDYIE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ A+ A+ LS P I RVG + D++++NPT EM D+QLDL++AG+ DA
Sbjct: 126 PDILALVASSAALTLSGAPFKGPIGAARVGFINDEYVLNPTLDEMVDTQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK----PKMLDTIKLPPPE 326
+LM+E L+E++++ AV G R V+A++E+ K P+ + +
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGH---RHFQPVVQAIIELAEKAAKEPREVAVVD--ESV 240
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L K + + EL I K R A+ +EKV+
Sbjct: 241 LEKEILGLIEPELRAAYAIPVKQDRYAAVGKAKEKVMA---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ + ++ + VFKE+ +K +R I++
Sbjct: 279 ----------------------HYFPEGQEPQ---YDKLRIAGVFKELEAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+R DGR + +R I ++ G+LPRAHGSALFTRGETQ+L V TLG + Q ID+L S
Sbjct: 314 GKRIDGRDSKTVRNIVAQVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSL-SGT 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP SVGE GR+G RREIGHG LA RA+ PVLP ++FPYT+RV S I
Sbjct: 373 YKETFLLHYNFPPYSVGETGRMGGTKRREIGHGKLAWRAIHPVLPPHHEFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G E
Sbjct: 433 TESNGSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTEQGITSLQMDIKIAGITEEIMKVALGQAKDGRIHILGEMSKALTNAR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L ++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ +DDGTVK+ + D S
Sbjct: 547 AELGEYAPRIETFKIATDKIREVIGTGGKVIREIVEKTGAK-VNIDDDGTVKVASSDGES 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
++ + I ++ P + IY +K + +G FV ++GL HIS+L++ + K
Sbjct: 606 IKAAIKWIKSIASDPELNAIYDGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTS 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +D+G+ RLS + +
Sbjct: 665 DVVKEGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
Length = 706
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/744 (42%), Positives = 442/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D LSEE+++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|218290095|ref|ZP_03494257.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
gi|218239804|gb|EED06993.1| Polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius LAA1]
Length = 735
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 309/738 (41%), Positives = 441/738 (59%), Gaps = 60/738 (8%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R+ ++ETG + RQA+ AV V GET++ +V + P E DFFPL VNY+ER A G+
Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERLYAVGKI 70
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR +H +L RLIDRP+RP +GF ++ QI+ VLS D P+ A+
Sbjct: 71 PGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEIAAMIG 130
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
++ +S++P + I GV VGLV +F++NPT ++ E S L L++AG+ DAI+M+E
Sbjct: 131 TSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIVMVEAGA 190
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + EE++++A+ G ++ I +E+ A + G K + PEL V E A ++
Sbjct: 191 NQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELEAAVREYATDK 250
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ ++ +K+ R +AL++L +VL E T P+
Sbjct: 251 VSAAVRNPDKLAREEALANLNAEVLEHFKE--------------TFPE------------ 284
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
E D+ V + + +R I+ G R DGR D I
Sbjct: 285 ------------------------KEADIAEVMHTILKERVREAILREGIRPDGRRLDEI 320
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPIS GLLPR HGSALFTRG+TQ+L+V TLG Q +D LE + R+ Y+FP
Sbjct: 321 RPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS-NRYMHHYNFP 379
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + APSRR+IGHG L ERAL+PV+PS +FPY IRV S I ESNGS+S AS+
Sbjct: 380 PFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRVVSEILESNGSTSQASI 439
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG +AL DAGVPIK +AG+AMG+V + D+ ILSDI G ED GDMDFKVAG
Sbjct: 440 CGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVA------ILSDIQGIEDHLGDMDFKVAG 493
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E G+TA QMDIK+ GI ++++AL+QA++GR +IL++M++ P LSK AP +
Sbjct: 494 TERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRADLSKFAPRVIT 553
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+K+ P+KI +IG GG+ + IIEETGV+ ID E DG V I + D +++ ++ N+
Sbjct: 554 VKIHPDKIRDVIGPGGRVINKIIEETGVK-IDIEQDGRVYIHSTDAEQANRAREMVENIV 612
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG Y ++ + YG FVEI PG+EGL HIS+L N +AK EDV +VGD + VK
Sbjct: 613 RDVEVGATY-TGKVTRVEKYGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQVGDTLTVK 671
Query: 819 LIEVNDKGQLRLSRRALL 836
+ E++++G++ LSR+ +L
Sbjct: 672 VTEIDNQGRINLSRKEVL 689
>gi|163853425|ref|YP_001641468.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens PA1]
gi|163665030|gb|ABY32397.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens PA1]
Length = 752
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 321/744 (43%), Positives = 439/744 (59%), Gaps = 65/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GDR++++ETG RQA G+V T GET + +V P DF PL VNYQER AA
Sbjct: 18 WGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQERAYAA 77
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD +A
Sbjct: 78 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPDIVA 137
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP I RVG + + +NP E+ +S LDL++AG+ DA+LM+E
Sbjct: 138 MVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVAGTQDAVLMVE 197
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE---LYKHV 331
LSE++++ AV G + + + L E K P+ PPE + V
Sbjct: 198 SEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR-----DFTPPENADVEAAV 252
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+A EL + + K R A+ +++ KV+ L
Sbjct: 253 LAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPA---------------------- 290
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EG+ P+ VK FKE SK +R I++ G R D
Sbjct: 291 -------------EGEQKFSPEK------------VKAAFKEAQSKVVRWNILDTGSRID 325
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +R I S G+LPRAHGS+LFTRGETQ+L V TLG + Q ID LE + +RF
Sbjct: 326 GRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYK-ERF 384
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP ++FPYTIRV S ITESNG
Sbjct: 385 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSEITESNG 444
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 445 SSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGD 498
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L +
Sbjct: 499 MDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKALTAARPELGE 558
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M++ +KI +IG+GGK ++ I+E+TG + I+ ED G VKI + D +++ +
Sbjct: 559 YAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAK-INIEDTGIVKIASSDGKAIKAAY 617
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P G IY +K I +G FV ++GL HISEL++ +AK DVVK
Sbjct: 618 NWIRSIVAEPEAGTIYDGTIVK-IMEFGAFVNFFGAKDGLVHISELAAQRVAKVGDVVKE 676
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G V VK + +++G++RLS + +
Sbjct: 677 GQKVKVKFLGADERGKIRLSMKVV 700
>gi|290473451|ref|YP_003466318.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
gi|289172751|emb|CBJ79522.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus bovienii SS-2004]
Length = 714
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 315/749 (42%), Positives = 443/749 (59%), Gaps = 60/749 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKAGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E LV RLIDRPLRP +GF +E QI++ V+S +
Sbjct: 63 YQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
L PD +A+ A A+ALS +P + I RVG + D++++NPT+ E+++S+LDL++AG+
Sbjct: 123 LVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM---LDTIKLPP 324
A+LM+E + L+EE ++ AV G + + + + + ALV GK K ++I P
Sbjct: 183 AGAVLMVESEAELLTEEQMLGAVVFGHEQQQIVIDHINALVAETGKEKWDWAPESINQP- 241
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L+ V E+A L +I K R +++++E+V I+ + E +
Sbjct: 242 --LHDRVAELAESRLGDAYRITEKQERYAQVNTIKEEVSAII-------------VAEAV 286
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+E E + V+D V + +R R++
Sbjct: 287 EKGVELEKSE---VLD-----------------------------VLSVLEKNVVRGRVL 314
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L
Sbjct: 315 RGEPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMG 374
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ N+FPYTIRV S
Sbjct: 375 E-RADRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTANEFPYTIRVVS 433
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G
Sbjct: 434 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 488 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITSEIMQVALNQAKGARLHILGVMEQAIQS 547
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P N +S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 548 PRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDS 606
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+ I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 607 DKAHHAIRRIEEITAEVEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 665
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D +++ V VK++E++ +G++RLS +
Sbjct: 666 VTDYLQLAQEVPVKVLEIDRQGRIRLSMK 694
>gi|261407930|ref|YP_003244171.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
Y412MC10]
gi|261284393|gb|ACX66364.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp.
Y412MC10]
Length = 701
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 313/747 (41%), Positives = 447/747 (59%), Gaps = 61/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R ++ ETG + +QA+ AV V GET + +C SEP D FFPL VNY+
Sbjct: 5 VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER A G+ GGF KREGR + +L RL DRP+RP +GF ++ Q+L+ V+S D
Sbjct: 62 ERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S+VP + I GV VG V F+VNP E E S + L++AG+ D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E + + EE++++A+ G + +++I +++ LV CGK KM + + +
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNR 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E A LV+ ++I+ K R+ A+ ++ ++ T+ E +ET P+LL+
Sbjct: 242 EVREFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEK----------YIET-PELLK 290
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D VK V ++ + +RR I R
Sbjct: 291 D------------------------------------VKEVLHDIVKEEVRRLITHDKVR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR IRPI LLPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E K
Sbjct: 315 PDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + AP RREIGHG L ERAL V+P++ DFPYTIR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPYTIRLVSEVIES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AGVAMG++ D D IL+DI G ED
Sbjct: 434 NGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------ILTDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG DG+TA QMDIK+ GI ++++ALQQAK+GR HIL +M + P +L
Sbjct: 488 GDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQKPRETL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S++AP I M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + +K
Sbjct: 548 SQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASSNDEMNKK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ +II + VG+IY +K I +G FVEI P ++GL HIS+LS+ +AK EDVV
Sbjct: 607 ALSIIEGIVREVAVGEIYTGT-VKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
+GD++ VK+ E++ +G++ LSR+A+L
Sbjct: 666 AIGDVITVKVTEIDQQGRINLSRKAVL 692
>gi|328948917|ref|YP_004366254.1| polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
DSM 2489]
gi|328449241|gb|AEB14957.1| Polyribonucleotide nucleotidyltransferase [Treponema succinifaciens
DSM 2489]
Length = 696
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 325/748 (43%), Positives = 453/748 (60%), Gaps = 66/748 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q V+ KI GD+++++ETG +G+QA+G V G T + +VC + E DF P+ V
Sbjct: 3 QRVTKKI--GDQELILETGKIGKQANGCVYAQIGGTAVIATVCASSEVKEGLDFVPVTVE 60
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E+F AAG+ GGF KREGR KD E+LV RLIDRP+RP F E QI+ +S DG
Sbjct: 61 YNEKFYAAGKIPGGFVKREGRPKDKEILVSRLIDRPMRPLFETSFGREIQIVPTCVSIDG 120
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ PD LAV A+ AV++S++P +AGVRVG + ++I+NPT ++ME QL++++AG+
Sbjct: 121 VNPPDILAVLASSAAVSISDIPFHGPVAGVRVGYLNGEYILNPTYEQMEKIQLEIVVAGT 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D M+EG + +SEE+++ A++ Q + ++ + LV++ GK K+ L P ++
Sbjct: 181 KDGFTMVEGGANEVSEEVMLGALEKAQGFITDMCLLQEELVKLAGKEKL----PLAPLDV 236
Query: 328 YKHVEEIAGEELVKVLQ----IKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
+ E + ++Q K K+ R A+ +++ K+ SE
Sbjct: 237 KLENADAIKAEAIPLMQEACFQKGKMARGNAVKAVKAKIAEKYSEQ-------------- 282
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
LEDE I+ K LF+ + F ++ LR I
Sbjct: 283 ----LEDE------------------IQAK-------LFNAL-----FDDIQYDLLRSSI 308
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+E G R DGR + IRPI+ +LPR HGSALFTRGETQSLAV TLG Q D++E
Sbjct: 309 LEKGLRIDGRGTEDIRPITCEVNVLPRPHGSALFTRGETQSLAVTTLGTAMDEQVYDDIE 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
D + F L Y+FPP SVGEVG++ RREIGHG LA R+L P++PS ++FPYTIRV
Sbjct: 369 GD-RTENFILHYNFPPYSVGEVGKL-TTGRREIGHGNLARRSLAPMIPSRSEFPYTIRVV 426
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S I ESNGSSS AS CGGCL+L AGVP+K +AG+AMG++ D ++ ILSDI
Sbjct: 427 SEIMESNGSSSQASTCGGCLSLLAAGVPMKKMVAGIAMGLITDGPQY---KKYAILSDIL 483
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG DGIT FQMDIK+ G+++ +M++AL+QAK GR HIL M KC
Sbjct: 484 GEEDHLGDMDFKVAGTRDGITGFQMDIKIAGVSMDIMRRALEQAKRGRNHILDIMEKCIS 543
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S +AP I MK+ +KI +IG GGK VK++ ++ V I+TEDDGTV I K
Sbjct: 544 KP-QPISPYAPKIETMKIAVDKIGALIGPGGKNVKALCQQYNV-TINTEDDGTVTIYGKS 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
S + +KA I + P G IY+ +K I +G F+EI PG+EGLCHIS+LS N +
Sbjct: 602 GVSTDAAKAAIKGICEDPEPGTIYQGT-VKRIMDFGAFIEILPGKEGLCHISKLSRNRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLS 831
K D++K G ++ VKL+EV+ G+L LS
Sbjct: 661 KVSDILKEGQVIPVKLLEVDKMGRLNLS 688
>gi|182680095|ref|YP_001834241.1| polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|257096681|sp|B2ICY4.1|PNP_BEII9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|182635978|gb|ACB96752.1| Polyribonucleotide nucleotidyltransferase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 715
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 321/742 (43%), Positives = 446/742 (60%), Gaps = 59/742 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I + R++++ETG + RQA GA+ T GET + +V A DFFPL VNYQE+
Sbjct: 10 EIEWAGRKLVLETGKIARQADGAIFATYGETTVLATVVSAKSVKPGVDFFPLTVNYQEKA 69
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP +G+ +ETQ++ VL++D + PD
Sbjct: 70 FAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPEGYRNETQVIVTVLAHDLENDPD 129
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
L++ A+ A+ LS VP + RV V ++ +NPT E++D+ LDL++AG+ DA+L
Sbjct: 130 ILSMVASSAALTLSGVPFMGPVGAARVAYVNGQYKINPTLDEVKDTALDLVVAGTSDAVL 189
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSE++++ AV G + + + + + L E K P+ D I E+ V
Sbjct: 190 MVESEAKELSEDVMLGAVMAGHSSFQPVIDAIIRLAEKAAKEPR--DLILPDKTEVEVAV 247
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
IA +L + +I +K R A+ +++ KV DLL E
Sbjct: 248 LAIAENDLREAYKITSKQDRYAAVDAVKAKVFG---------------------DLLPAE 286
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E + F + V VF ++ +K +R I++ G R D
Sbjct: 287 GEAK--------------------------FPKDLVAEVFHDLQAKVVRWNILDNGIRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q IDNLE +RF
Sbjct: 321 GRDVKTVRPILAEVGILPRAHGSALFTRGETQALVVATLGTGEDEQLIDNLEGTYR-ERF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ +FPYTIRV S ITESNG
Sbjct: 380 LLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPMLPTPAEFPYTIRVVSEITESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP+K AG+AMG++L+ + + +LSDI G ED GD
Sbjct: 440 SSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGERYA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E+GIT+ QMDIK+ GI +M+ AL QAK+GR HIL EM K L +
Sbjct: 494 MDFKVAGTEEGITSLQMDIKITGINEEIMRVALGQAKEGRLHILGEMAKAITGARAELGE 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I +++ EKI +IG+GGK ++ I E+TG + I+ EDDGTVK+ + D +S++ +
Sbjct: 554 FAPRIETLRIPTEKIREVIGTGGKVIREICEKTGAK-INIEDDGTVKVASSDGNSIKAAI 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY +K + +G FV ++GL HIS+L+ +AK DVVK
Sbjct: 613 NWIKSIATDPEVGHIYDGTVVK-VVDFGAFVNFFGSKDGLVHISQLAKGRVAKTSDVVKE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +D+G++RLS R
Sbjct: 672 GDKVKVKLLGFDDRGKVRLSMR 693
>gi|329929308|ref|ZP_08283061.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
gi|328936677|gb|EGG33120.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF5]
Length = 701
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 313/747 (41%), Positives = 447/747 (59%), Gaps = 61/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R ++ ETG + +QA+ AV V GET + +C SEP D FFPL VNY+
Sbjct: 5 VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER A G+ GGF KREGR + +L RL DRP+RP +GF ++ Q+L+ V+S D
Sbjct: 62 ERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S+VP + I GV VG V F+VNP E E S + L++AG+ D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPNIAEQEASDIYLVVAGTRD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E + + EE++++A+ G + +++I +++ LV CGK KM + + +
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNETVNR 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E A LV+ ++I+ K R+ A+ ++ ++ T+ E +ET P+LL+
Sbjct: 242 EVREFAEARLVEAVRIEEKHARQDAIDAINDEAYTVFEEK----------YIET-PELLK 290
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D VK V ++ + +RR I R
Sbjct: 291 D------------------------------------VKEVLHDIVKEEVRRLITHDKVR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR IRPI LLPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E K
Sbjct: 315 PDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + AP RREIGHG L ERAL V+P++ DFPYTIR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVDFPYTIRLVSEVIES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AGVAMG++ D D IL+DI G ED
Sbjct: 434 NGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------ILTDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG DG+TA QMDIK+ GI ++++ALQQAK+GR HIL +M + P +L
Sbjct: 488 GDMDFKVAGTPDGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQKPRETL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S++AP I M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + +K
Sbjct: 548 SQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASSNDEMNKK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ +II + VG+IY +K I +G FVEI P ++GL HIS+LS+ +AK EDVV
Sbjct: 607 ALSIIEGIVREVAVGEIYTGT-VKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
+GD++ VK+ E++ +G++ LSR+A+L
Sbjct: 666 AIGDVITVKVTEIDQQGRINLSRKAVL 692
>gi|254563353|ref|YP_003070448.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens DM4]
gi|254270631|emb|CAX26635.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens DM4]
Length = 748
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 321/744 (43%), Positives = 439/744 (59%), Gaps = 65/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GDR++++ETG RQA G+V T GET + +V P DF PL VNYQER AA
Sbjct: 11 WGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD +A
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPDIVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP I RVG + + +NP E+ +S LDL++AG+ DA+LM+E
Sbjct: 131 MVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVAGTQDAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE---LYKHV 331
LSE++++ AV G + + + L E K P+ PPE + V
Sbjct: 191 SEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR-----DFTPPENADVEAAV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+A EL + + K R A+ +++ KV+ L
Sbjct: 246 LAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPA---------------------- 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EG+ P+ VK FKE SK +R I++ G R D
Sbjct: 284 -------------EGEQKFSPEK------------VKAAFKEAQSKVVRWNILDTGSRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +R I S G+LPRAHGS+LFTRGETQ+L V TLG + Q ID LE + +RF
Sbjct: 319 GRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYK-ERF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP ++FPYTIRV S ITESNG
Sbjct: 378 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 438 SSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L +
Sbjct: 492 MDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKALTAARPELGE 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M++ +KI +IG+GGK ++ I+E+TG + I+ ED G VKI + D +++ +
Sbjct: 552 YAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAK-INIEDTGIVKIASSDGKAIKAAY 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P G IY +K I +G FV ++GL HISEL++ +AK DVVK
Sbjct: 611 NWIRSIVAEPEAGTIYDGTIVK-IMEFGAFVNFFGAKDGLVHISELAAQRVAKVGDVVKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G V VK + +++G++RLS + +
Sbjct: 670 GQKVKVKFLGADERGKIRLSMKVV 693
>gi|218532284|ref|YP_002423100.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens CM4]
gi|240140844|ref|YP_002965324.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens AM1]
gi|418058277|ref|ZP_12696254.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens DSM 13060]
gi|254782727|sp|B7KN55.1|PNP_METC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|257096722|sp|A9W8P8.2|PNP_METEP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218524587|gb|ACK85172.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens CM4]
gi|240010821|gb|ACS42047.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium
extorquens AM1]
gi|373568198|gb|EHP94150.1| Polyribonucleotide nucleotidyltransferase [Methylobacterium
extorquens DSM 13060]
Length = 745
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 321/744 (43%), Positives = 439/744 (59%), Gaps = 65/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GDR++++ETG RQA G+V T GET + +V P DF PL VNYQER AA
Sbjct: 11 WGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VLS+D + PD +A
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSHDLENDPDIVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ LS VP I RVG + + +NP E+ +S LDL++AG+ DA+LM+E
Sbjct: 131 MVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVAGTQDAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE---LYKHV 331
LSE++++ AV G + + + L E K P+ PPE + V
Sbjct: 191 SEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR-----DFTPPENADVEAAV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+A EL + + K R A+ +++ KV+ L
Sbjct: 246 LAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPA---------------------- 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EG+ P+ VK FKE SK +R I++ G R D
Sbjct: 284 -------------EGEQKFSPEK------------VKAAFKEAQSKVVRWNILDTGSRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +R I S G+LPRAHGS+LFTRGETQ+L V TLG + Q ID LE + +RF
Sbjct: 319 GRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDALEGTYK-ERF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP ++FPYTIRV S ITESNG
Sbjct: 378 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRVVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 438 SSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+E+GIT+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L +
Sbjct: 492 MDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSKALTAARPELGE 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M++ +KI +IG+GGK ++ I+E+TG + I+ ED G VKI + D +++ +
Sbjct: 552 YAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAK-INIEDTGIVKIASSDGKAIKAAY 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P G IY +K I +G FV ++GL HISEL++ +AK DVVK
Sbjct: 611 NWIRSIVAEPEAGTIYDGTIVK-IMEFGAFVNFFGAKDGLVHISELAAQRVAKVGDVVKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G V VK + +++G++RLS + +
Sbjct: 670 GQKVKVKFLGADERGKIRLSMKVV 693
>gi|253701574|ref|YP_003022763.1| polynucleotide phosphorylase/polyadenylase [Geobacter sp. M21]
gi|259534126|sp|C6E2P5.1|PNP_GEOSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251776424|gb|ACT19005.1| Polyribonucleotide nucleotidyltransferase [Geobacter sp. M21]
Length = 696
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 319/744 (42%), Positives = 436/744 (58%), Gaps = 59/744 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
+ I +ETG + +QASGAV + G+T++ + E FFPL VNYQE+ A GR
Sbjct: 12 KTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYAGGRI 71
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
G FFKREGR D+E L CRLIDRP+RP +GF ++TQ+++ V+S D + P L++
Sbjct: 72 PGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADKDNDPAILSMIG 131
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A+ +S+ P + IAGV+VG V FI NPT +E+E S L++++A S +AILM+EG
Sbjct: 132 ASAALMVSDCPFAGPIAGVKVGRVNGAFIANPTAEELEKSDLEIVIAASQEAILMVEGSA 191
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+SE L++A+ G AV+ I L + G PK + + EL V +A E
Sbjct: 192 AEVSENDLLEAIFFGHAAVQPILAAQLELAKKVGTPKRVILAPVVNEELKARVAALAKEG 251
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ + ++IK K+ R A+ ++ ET+ L +
Sbjct: 252 MKQAVRIKTKVERHLAIDAI---------------------TAETVAALAAEF------- 283
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
EG SE +VK +++ +R I++ G+R DGR I
Sbjct: 284 ------EG----------------SEKEVKGFIEDLEYDLVREHIIKDGQRIDGRDTKTI 321
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
R IS+ LLPRAHGSALFTRGETQS+ TLG QRID+L D K+F L Y+FP
Sbjct: 322 RAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSR-KKFMLHYNFP 380
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE AP RREIGHG LAERAL+ VLP +DFPYTIR+ S ITESNGSSSMA+V
Sbjct: 381 PYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIRIVSDITESNGSSSMATV 440
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CGG L++ DAG+PIK +AG+AMG++ + D+F ILSDI G ED GDMDFKVAG
Sbjct: 441 CGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFA------ILSDILGDEDHLGDMDFKVAG 494
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
+G+TA QMDIK+GG+T +M AL QAK GR HIL EM K LS AP I
Sbjct: 495 TAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIAASRGDLSAFAPRITT 554
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+ VK +KI +IGSGGK ++S+ E TGV +ID +D G + I + + + + + +I NLT
Sbjct: 555 IWVKVDKIRDVIGSGGKNIRSVTEATGV-SIDIDDTGKINIASTNKEACDLAIKMIRNLT 613
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
G +Y +K I +G FVEI PG +GL H+SEL + + D++K GD V VK
Sbjct: 614 AEAEEGKLYMGT-VKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVSDILKEGDKVLVK 672
Query: 819 LIEVNDKGQLRLSRRALLPEADAE 842
I ++ +G+++LSR+ L + E
Sbjct: 673 CIGIDKQGKIKLSRKEALGQTFTE 696
>gi|284799739|ref|ZP_05984737.2| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
gi|284797006|gb|EFC52353.1| polyribonucleotide nucleotidyltransferase [Neisseria subflava
NJ9703]
Length = 707
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 318/744 (42%), Positives = 441/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +I+NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYVNGVYILNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D LSEE+++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 192 SEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKINQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|392551232|ref|ZP_10298369.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
spongiae UST010723-006]
Length = 713
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/758 (41%), Positives = 453/758 (59%), Gaps = 63/758 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
QP+ K FG ++ +ETG + RQA AV + G+T + SV + DFFPL VN
Sbjct: 2 QPIIKKFQFGQHEVTLETGAVARQADAAVIASIGDTAVLVSVVGKREAAPGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGF KREGR D E L RLIDRP+RP GF +E Q+++ V+S D
Sbjct: 62 YQERMYAAGRIPGGFLKREGRPSDGETLTARLIDRPIRPLFPDGFVNEVQVIATVVSIDP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD + + A+A+S +P + + RVG + D++++NP+ E+ +S+LDL++AG+
Sbjct: 122 EIKPDIVTLIGTSAALAISGIPFNGPLGAARVGYINDQYVLNPSATELVESKLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVG----QDAVREISNEVKALVEMCGKPKMLDTIKLP 323
++A+LM+E + LSE++++ AV G Q A++ I NE +A GKP T
Sbjct: 182 ENAVLMVESEAEVLSEDVMLGAVVYGHEQSQAAIKAI-NEFQA---EAGKPAWDWTAPEK 237
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + IA E++ I +K+ R++A+S+ + +V+ L+
Sbjct: 238 NVTLADKIAAIAEEKVGAAYLITDKVARKEAISAAKAEVVEKLT---------------- 281
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+L EDE DE+ +V +F + K +R RI
Sbjct: 282 -AELAEDESLDEQ-----------------------------EVGKLFGSLEKKIVRGRI 311
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G +R DGR D +R + G+LPR HGSA+FTRGETQ+L TLG ++ AQ ID+L
Sbjct: 312 IAGEKRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDAQMIDDL- 370
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPY++RV
Sbjct: 371 TGTKTDRFMLHYNFPPYCVGETGFVGSPKRREIGHGNLAKRGIAAVMPSLEEFPYSVRVV 430
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL +AGVP K S+AG+AMG+V + D+F ++LSDI
Sbjct: 431 SEITESNGSSSMASVCGTSLALMNAGVPTKASVAGIAMGLVKEGDDF------VVLSDIL 484
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +G+TA QMDIK+ GI +M+ AL QAK R HIL+ M +
Sbjct: 485 GDEDHLGDMDFKVAGSSEGVTALQMDIKIEGINKEIMQIALNQAKAARMHILSVMDQAID 544
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
PS LS+ AP I+++ + P+KI +IG GG ++++ EETG I+ EDDGTVKI A +
Sbjct: 545 KPSEELSEFAPRIYVVNIPPKKIADVIGKGGATIRALTEETGT-TIEIEDDGTVKIAATN 603
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
S + A + LT VG IY + ++ I +G FV + PG++GL HIS++S +
Sbjct: 604 GESARAAIARVEQLTAELEVGTIY-SGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVN 662
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D +KVGD V VK++EV+ +G++RLS + L + DA
Sbjct: 663 NVADHLKVGDEVQVKVLEVDRQGRVRLSIKEALKKDDA 700
>gi|395789261|ref|ZP_10468784.1| polyribonucleotide nucleotidyltransferase [Bartonella taylorii
8TBB]
gi|395430308|gb|EJF96352.1| polyribonucleotide nucleotidyltransferase [Bartonella taylorii
8TBB]
Length = 733
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 444/743 (59%), Gaps = 58/743 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GG+ KRE R + E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 LYAVGKIPGGYLKRESRPTESETLISRLIDRPIRPLFANGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS VP IAG RVG ++I+NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGVPFMGPIAGARVGYCNGQYILNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAQELPEDIMLGAVMFGHKGFQPVLDAIIKLAEVAAKDPR--DFVPEDLSDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A + + K I +K R + +L+ +V+ + +P+ ED
Sbjct: 245 MLEMAEQNIRKAYTITDKQERYAVIDALKTEVIN-----------------KFMPETEED 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
FS + VFK++ +K +R I++ +R
Sbjct: 288 -----------------------------CKFSADQIATVFKKLQAKIVRGNILDTQKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRDLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +MK AL+QAK GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMKIALEQAKGGRIHILNEMAKALTNARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNISVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K DVVK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVTKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR 833
GD V VKL+ +++G++RLS +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMK 692
>gi|430005880|emb|CCF21683.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Rhizobium sp.]
Length = 717
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/749 (42%), Positives = 445/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP I G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESTLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L E++++ AV G + + + + L E+ K P+ D L E
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFQPEDHSALEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ +H E EL +I K R A+ +++ KV
Sbjct: 245 MLQHFEA----ELRDAYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ + P EV + VFK + +K +R I++
Sbjct: 277 --------------------KAHFFPEGME--PKYTPEV-IGAVFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KNRIDGRDLETVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVPI +AG+AMG++L+ + F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPIAKPVAGIAMGLILEGERFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR+HIL EM
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRKHILNEMANAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG +Y +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 606 IEAARKWIHSIVAEPEVGAVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLAADRVAKTT 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|304393828|ref|ZP_07375753.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
gi|303294027|gb|EFL88402.1| polyribonucleotide nucleotidyltransferase [Ahrensia sp. R2A130]
Length = 709
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 320/745 (42%), Positives = 443/745 (59%), Gaps = 58/745 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I +G R + +E G + RQA G+V VT GET + +V P DFFPL VNY E
Sbjct: 8 TVEIEWGGRPLTLEAGQVARQADGSVIVTYGETTVMCNVVSEKKPKPHLDFFPLTVNYIE 67
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GGFFKRE R ++E LVCRLIDRP+RP +G+ ++TQ+ VLS+D +
Sbjct: 68 KAYAAGKIPGGFFKREARPSENETLVCRLIDRPIRPLFAEGYKNDTQVTCTVLSHDMENN 127
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A A+ +S VP S IAG RVGL+ +++NP EM +S LDL++AG+ DA
Sbjct: 128 PDIVAMIATSAALTISGVPFSGPIAGARVGLIDGDYVLNPNVDEMPESDLDLIVAGTTDA 187
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E + LSEE+++ AV G + + + + V L E C K T+ +L
Sbjct: 188 VLMVESEANVLSEEVMLGAVMFGHEEFQPVIDAVIQLAEKCAKEPRPHTVP-DNSKLEGE 246
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V ++ G+ + K I +K R A + E +KD+ L +
Sbjct: 247 VTKLVGKAIEKAYTIADKQDRYAA-----------IDEAKATAKDK----------FLSE 285
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E DEE G VFK+V + +R I++ +R
Sbjct: 286 ESTDEEKTTFGG---------------------------VFKQVQANVVRGSIIKTKKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D +R I S+ G+LPR HGSALFTRGETQ++ V TLG Q ID L + +
Sbjct: 319 DGRDLDTVRQIESQVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALTGTYK-EN 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GRIG SRREIGHG LA RA++ VLPS DFPYT+R S ITESN
Sbjct: 378 FLLHYNFPPYSVGETGRIGFTSRREIGHGKLAWRAVKAVLPSKEDFPYTLRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LA DAGVP+K +AG+AMG++ + D+F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLAFMDAGVPLKAPVAGIAMGLIKEGDDFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +GIT+ QMDIK+ GIT +MK AL+QAK GR IL EM K + L
Sbjct: 492 DMDFKVAGTAEGITSLQMDIKITGITEDIMKIALEQAKGGRETILNEMSKALTEGRSELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I K+ +KI +IGSGGK ++ I+E+TG + ++ EDDGTVK+ + D +++ +
Sbjct: 552 EFAPRIESFKIPTDKIREVIGSGGKVIREIVEKTGAK-VNIEDDGTVKVASSDGKAIDAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++T P VG+IY+ +K++ +G FV ++GL HIS+L+ + K DVV
Sbjct: 611 LKWIRSITDDPEVGEIYQGTVVKTV-DFGAFVNFFGAKDGLVHISQLADERVGKTTDVVN 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +D+G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDDRGKVRLSMKVV 694
>gi|90581545|ref|ZP_01237338.1| polyribonucleotide nucleotidyltransferase [Photobacterium angustum
S14]
gi|90437307|gb|EAS62505.1| polyribonucleotide nucleotidyltransferase [Vibrio angustum S14]
Length = 708
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 438/758 (57%), Gaps = 60/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G+ + +ETG M RQA+ AV V+ +T ++ SV E DFFPL VN
Sbjct: 2 NPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD + + A+A+S +P + I RVG + D+F++NP+ E+E+S+LDL++AG+
Sbjct: 122 AVSPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA+LM+E D LSEE ++QAV G D + N + P L
Sbjct: 182 KDAVLMVESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPD 386
+ E+A +LV QI K+ R + + +V IL+E
Sbjct: 242 KNKIAELAEAKLVDAYQITEKMARYDRIHEIAGEVNDAILAE------------------ 283
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
D E + ++H +F ++ +R RI+ G
Sbjct: 284 -------------DAEANSKEIHT-------------------IFHDLEKTVVRGRIIAG 311
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 312 NPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGET 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S I
Sbjct: 372 K-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSEI 430
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G E
Sbjct: 431 TESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDILGDE 484
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG +DGITA QMDIK+ GIT +M+ AL QAK R+HIL+ M P
Sbjct: 485 DHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPR 544
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S+ AP IH MK+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A + ++
Sbjct: 545 EDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTVKIAATEGTA 603
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++ I +T VG IY ++ I +G FV + +EGL HIS++S + + K
Sbjct: 604 AKEAIRRIEEITADVEVGRIY-TGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVS 662
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
D +++G V VK++E++ +G++RLS + + AE P
Sbjct: 663 DYLQMGQEVQVKVLEIDRQGRIRLSMKEAVETPAAEAP 700
>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB8]
gi|81364132|sp|Q5SJ75.1|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
Length = 713
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 328/774 (42%), Positives = 455/774 (58%), Gaps = 75/774 (9%)
Query: 81 DALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD 140
+ P+ PQ ++ R +++ETG +QASG+V V +T++ + ++ P E +D
Sbjct: 2 EGTPNVPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVE-AD 60
Query: 141 FFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILS 200
F PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE QI+
Sbjct: 61 FLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIV 120
Query: 201 WVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQL 260
VLS D + PD L AA A+ LS++P IA VRVGL+G F++NPT QE+E+SQL
Sbjct: 121 TVLSADQKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 261 DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI 320
DL++AGS +AILM+E + EE L+QA++ ++ I +A+ KPKM T
Sbjct: 181 DLVVAGSKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWT- 239
Query: 321 KLPPPE---------LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGY 371
PPE LY+ E L +VLQ +K R +AL+ E++
Sbjct: 240 ---PPESLPEEEKEALYRLALERG---LSQVLQTASKGERSRALAEFAERL--------- 284
Query: 372 VSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVF 431
I E +P DG DEG P+ S F
Sbjct: 285 --------IAEALPK-----------GEDGTPDEG----------KKPLYES------AF 309
Query: 432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
EV + LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 310 DEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 369
Query: 492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
+ Q +D+L DE ++F + Y+FPP S GEV R+ SRRE+GHG LA+RAL+ V+P
Sbjct: 370 TGRDEQILDDL-GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
+ DFPYTIRV + ESNGSSSMA+VC GCLAL DAGVPI+ +AGVAMG+V +
Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWE----- 483
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
+ +IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R
Sbjct: 484 -ENRAVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREAR 542
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
IL M P P L AP I +KV EKI L+IG GGK V++ +EE GVE +D
Sbjct: 543 LKILDLMEAVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDI 600
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
E+DGTV+I + DL + ++K I +LT VG+IY + I P+G F+ + PG EGL
Sbjct: 601 EEDGTVRIYSSDLQAALEAKKRIEDLTREAKVGEIYEGT-VTRITPFGAFISLFPGTEGL 659
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ +A+ ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 660 LHISQIAPGRVARVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 709
>gi|398310762|ref|ZP_10514236.1| polynucleotide phosphorylase/polyadenylase [Bacillus mojavensis
RO-H-1]
Length = 705
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/743 (42%), Positives = 450/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VETG + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAGV VG + ++F++NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSVSDIPFEGPIAGVTVGRIDNQFVINPTVDQLEKSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEETMLEAIMFGHDEIKRLIAFQEEIVAAVGKEKSEIKLYEIDEELNEKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ ++ N V+K E+++
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAITEVK---------NTVVAK-------------FEEDEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE + K + S KLV EV RR I E R DGR
Sbjct: 287 DEETI-----------------KQVKQILS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILNSMLATLSESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ SS +K+K I
Sbjct: 554 PKILTMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSTVESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALDRVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|241758689|ref|ZP_04756802.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
gi|241320897|gb|EER57110.1| polyribonucleotide nucleotidyltransferase [Neisseria flavescens
SK114]
Length = 706
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/744 (42%), Positives = 441/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D LSEE+++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPEPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|95929621|ref|ZP_01312363.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
gi|95134318|gb|EAT15975.1| Polyribonucleotide nucleotidyltransferase [Desulfuromonas
acetoxidans DSM 684]
Length = 699
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/745 (41%), Positives = 436/745 (58%), Gaps = 59/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I F + + +ETG M RQA GA VT GET I +V A E DFFPL VNYQE+
Sbjct: 6 VEIEFNGQPLTIETGKMARQADGATIVTYGETKILCTVVSAKTMREGQDFFPLTVNYQEK 65
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F A+G+ G FF+RE + E L+CRLIDRP+RP KG+ +ETQI+ V+S D ++ P
Sbjct: 66 FYASGKIPGSFFRRERGATERETLICRLIDRPMRPLFPKGYLYETQIIPTVISADCVNDP 125
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA +V++S++P IAGVRVG V +FI NPT ++ E S +++++AGS DAI
Sbjct: 126 DTLSILAASASVSVSDIPFGGPIAGVRVGRVDGEFIANPTLEQQEQSDIEIVVAGSKDAI 185
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+EG D +SE+ +++AV G A++ + L E+ G K + L + +
Sbjct: 186 MMVEGEADLISEDEMLEAVFFGHQAIQPLIEMQTKLAELVGVEKREFIVPETDAALEEKI 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+A + K + I+ K R AL + + L+E
Sbjct: 246 VSLAQGRVEKAVTIRAKQERYAALKEIRADIQEQLAEE---------------------- 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+G DE + + + + +R+ + + R D
Sbjct: 284 -------FEGRSDE---------------------ISAIMGSIEKRVVRQSVTKDQIRID 315
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + IRPIS G+LPRAHGSALFTRGETQ+L TLG QR+DN++ E K+F
Sbjct: 316 GRKMNEIRPISCEVGVLPRAHGSALFTRGETQALVSTTLGTASDEQRMDNIQGM-EFKKF 374
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP VGE P RREIGHG LAER+ ++P +DFPYT+R+ S I ESNG
Sbjct: 375 MLHYNFPPFCVGETSMRLFPGRREIGHGMLAERSATKIMPEFDDFPYTVRIVSEILESNG 434
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG ++L DAGVP K ++AG+AMG++ + D+ ILSDI G ED GD
Sbjct: 435 SSSMASVCGASMSLMDAGVPAKDAVAGIAMGLIKEGDDIA------ILSDILGDEDHLGD 488
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKV G ++G+ A QMDIK+ G+T +M++AL QAK+GR HIL EM K P +S
Sbjct: 489 MDFKVTGTKEGVAALQMDIKIDGVTRDIMQRALAQAKEGRLHILGEMAKAISAPREDMSP 548
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I + VKP+++ +IGSGGK V+ IIE TG ID EDDG + I++ + + + +
Sbjct: 549 YAPRITTVFVKPDQVRTVIGSGGKTVRGIIEATGC-GIDIEDDGRINISSSNGDAAKAAA 607
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+I LT P VG +Y N +K I +G FVEI G +GL H+SEL+ + K D++
Sbjct: 608 QMIKELTQSPEVGKLY-NGTVKKIMDFGAFVEIFSGTDGLVHVSELAKERVNKVTDILNE 666
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD V VK I V+ +G+++LSR+ L
Sbjct: 667 GDKVLVKCIGVDRQGKIKLSRKEAL 691
>gi|330447373|ref|ZP_08311022.1| polyribonucleotide nucleotidyltransferase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491564|dbj|GAA05519.1| polyribonucleotide nucleotidyltransferase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 708
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 314/760 (41%), Positives = 447/760 (58%), Gaps = 64/760 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G+ + +ETG M RQA+ AV V+ +T ++ SV E DFFPL VN
Sbjct: 2 NPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD + + A+A+S +P + I RVG + D+F++NP+ E+E+S+LDL++AG+
Sbjct: 122 AVSPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E D L+EE ++QAV G D + + +KA+ E + + P E
Sbjct: 182 EAAVLMVESEADRLTEEQMLQAVVFGHDQQQTV---IKAINEFAAEVATPAWDWVAPAEN 238
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L + E+A +LV+ QI K+ R + + ++V +L
Sbjct: 239 TALKNKIAELAEAKLVEAYQITEKMARYDRIHEIADEVNEVL------------------ 280
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L ED E + ++H +F ++ +RR I+
Sbjct: 281 --LAEDV----------EANTKEIHT-------------------IFHDLEKTVVRRSII 309
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 AGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTG 369
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 370 EKK-DYFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSIDEFPYTVRVVS 428
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 429 EITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDILG 482
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG EDGITA QMDIK+ GIT +M+ AL QAK R+HIL+ M
Sbjct: 483 DEDHLGDMDFKVAGTEDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINT 542
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P +S+ AP IH MK+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A +
Sbjct: 543 PREDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTVKIAATEG 601
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++ +++ I +T VG IY ++ I +G FV + +EGL HIS++S + + K
Sbjct: 602 TAAKEAIRRIEEITADVEVGRIY-TGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEK 660
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
D +++G V VK++E++ +G++RLS + + AE P
Sbjct: 661 VSDYLQMGQEVKVKVLEIDRQGRIRLSMKEAVETPAAEAP 700
>gi|227824076|ref|YP_002828049.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium fredii
NGR234]
gi|254782732|sp|C3MC71.1|PNP_RHISN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|227343078|gb|ACP27296.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium fredii
NGR234]
Length = 717
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 316/749 (42%), Positives = 444/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIVTVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +++ AA A+ LS +P I G RVG + ++++NP EM++S LDL++AG+ +A+
Sbjct: 127 DVVSMVAASAALTLSGIPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTQEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + + L E+ K P+ D PE +
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGQQGFQPVIDAIIKLAEVAAKEPREFD------PEDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA +EL +I K R A+ +++ KV +P+
Sbjct: 241 LENAMLAIAEDELRNAYKITEKAARYAAVDAVKAKVKE-----------------HFLPE 283
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+E+ E ++ VFK + +K +R I++
Sbjct: 284 GIENPAHTAE-----------------------------EIGSVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP FPYT+RV S I
Sbjct: 375 K-ERFMLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPEAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT+ QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTEAGITSLQMDIKIEGITEEIMGIALNQAKGGRLHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|269137767|ref|YP_003294467.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|387866511|ref|YP_005697980.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
gi|267983427|gb|ACY83256.1| polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
EIB202]
gi|304557824|gb|ADM40488.1| Polyribonucleotide nucleotidyltransferase [Edwardsiella tarda
FL6-60]
Length = 707
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 323/757 (42%), Positives = 445/757 (58%), Gaps = 70/757 (9%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P K +G + +ETG M RQA+ AV VT +T ++ +V A E DFFPL VNY
Sbjct: 4 PTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 64 QERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPT E++ S+LDL++AG+D
Sbjct: 124 VSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTMDELKQSRLDLVVAGTD 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-- 326
+A+LM+E D LSE+ ++ AV G D + + +KAL GKP+ + PE
Sbjct: 184 NAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALAAEVGKPRW----EWHAPEVN 239
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L V E+A L + I K R + ++E V I
Sbjct: 240 VALQHRVAEMAEARLGEAYHITEKQARYAKVDEIKESV---------------------I 278
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
DLL ++D +D G++ + + +R R++
Sbjct: 279 VDLLAEDDA---------LDAGEI-------------------SDILGALEKAVVRGRVL 310
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 311 RGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL-T 369
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS + FPYT+RV S
Sbjct: 370 GERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYTVRVVS 429
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNF------VVLSDILG 483
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 484 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINA 543
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P +S+ AP IH +K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 544 PRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDG 602
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+ + I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 603 DKAKHAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D +++G V VK++EV+ +G++RLS + EA+A
Sbjct: 662 VTDYLQMGQEVAVKVLEVDRQGRVRLS----IKEANA 694
>gi|110636259|ref|YP_676467.1| polynucleotide phosphorylase/polyadenylase [Chelativorans sp. BNC1]
gi|123161513|sp|Q11BC3.1|PNP_MESSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|110287243|gb|ABG65302.1| 3' exoribonuclease [Chelativorans sp. BNC1]
Length = 715
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 319/757 (42%), Positives = 448/757 (59%), Gaps = 68/757 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGIDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP ++G+ ++TQ++ VL +D + P
Sbjct: 67 TFAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGYKNDTQVIITVLQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ LS VP + RVG VG ++I+NP EM +++LDL++AG+ DA+
Sbjct: 127 DILSMVAASAALTLSGVPFMGPVGAARVGYVGGEYILNPHLDEMAETKLDLVVAGTSDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPP 325
LM+E L E++++ AV G + + + + L E+ K P+ L ++
Sbjct: 187 LMVESEAHELPEDVMLGAVMFGHRNFQPVIDAIIKLAEVAAKEPREFLPEDLSALE---A 243
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
E+ K VE +L +I NK R A+++ + KV G
Sbjct: 244 EMLKVVEA----DLRDAYKITNKQARYDAVNAAKAKVKEAFLPEG--------------- 284
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
++ K TP V VFK + +K +R I++
Sbjct: 285 --------------------------AEAYKWTPE-----QVATVFKALQAKIVRWNILD 313
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR +RPI + G+LPR HGSA+FTRGETQ+L V TLG + Q +D+L
Sbjct: 314 TGSRIDGRDLRSVRPIVAEVGVLPRTHGSAVFTRGETQALVVATLGTGEDEQYVDSLTGT 373
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIRV S
Sbjct: 374 VK-ETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPLLPAPEQFPYTIRVVSE 432
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G
Sbjct: 433 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFA------VLSDILGD 486
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG +G+T+ QMDIK+ GIT +MK AL+QAKDGR HIL EM
Sbjct: 487 EDHLGDMDFKVAGTAEGVTSLQMDIKITGITEEIMKVALEQAKDGRLHILGEMANALSES 546
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IG+GGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 547 RGELGEFAPRIEVMHIPTDKIRDVIGTGGKVIREIVEKTGAK-INIEDDGTVKIASSNGK 605
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG+IY +K+ A +G FV R+GL HIS+L+ + K
Sbjct: 606 EIEAARKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAPERVQKT 664
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK GD V VKL+ +++G++RLS + + E E
Sbjct: 665 TDVVKEGDKVFVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 329/773 (42%), Positives = 455/773 (58%), Gaps = 69/773 (8%)
Query: 79 LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP 138
+ +A P+ PQ + R +++E G +QASG+V V G+T++ + ++ P E
Sbjct: 1 MPEATPNTPQAHRYETQVAGRPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIE- 59
Query: 139 SDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQI 198
+DF PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE Q+
Sbjct: 60 ADFLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQV 119
Query: 199 LSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDS 258
+ VLS D + PD L TAA A+ LS++P +A VRVGL+G +F++NPT QE+ +S
Sbjct: 120 IVTVLSADQKNPPDILGPTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSES 179
Query: 259 QLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLD 318
LDL++AGS DAILM+E + EEML+QA++ ++ I + + + GKPKM
Sbjct: 180 ALDLVVAGSRDAILMVEAGAQEVDEEMLVQALEFAHREMQPILDLQEEIARALGKPKMAW 239
Query: 319 TIKLPPPELYKHVEEIAGEELV------KVLQIKNKIPRRKALSSLEEKVLTILSENGYV 372
T PPE E+ A L VLQ +K R +AL + E +
Sbjct: 240 T----PPEALSEEEKEAFYRLAVERGLSAVLQTASKGERSRALEAFAEAL---------- 285
Query: 373 SKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFK 432
+ E +P DG DE S+K P+ S F
Sbjct: 286 -------VAEALPK-----------GEDGTPDE--------SKK--PLYES------AFA 311
Query: 433 EVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGD 492
EV K LRR ++E G+R+DGR +RPI +LPR HGSA+FTRGETQ L +TLG
Sbjct: 312 EVVRKELRRLVLEEGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTVTLGT 371
Query: 493 KQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPS 552
+ Q ID+L DE ++F + Y+FPP S GEV R+ SRREIGHG LA+RAL+ VLP
Sbjct: 372 GRDEQIIDDL-GIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLAKRALKAVLPP 430
Query: 553 DNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGG 612
+ FPYTIRV + ESNGSSSMA+VC GCLAL DAGVP+K +AGVAMG+V + +
Sbjct: 431 EEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMGLVWEGER--- 487
Query: 613 DGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRR 672
+IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R
Sbjct: 488 ---AVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALMQAREARM 544
Query: 673 HILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTE 732
IL M P P L AP I +KV EKI L+IG GGK V++ +EE GVE +D E
Sbjct: 545 KILDLMESVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDIE 602
Query: 733 DDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLC 792
+DGTV+I + D+ + +K+K I LT+ VG+IY + I P+G FV + PG EGL
Sbjct: 603 EDGTVRIYSSDMEAAQKAKKRIEELTLEAKVGEIYEGT-VTKITPFGAFVSLFPGTEGLL 661
Query: 793 HISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ + + ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 662 HISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 710
>gi|332289494|ref|YP_004420346.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
gi|330432390|gb|AEC17449.1| polynucleotide phosphorylase/polyadenylase [Gallibacterium anatis
UMN179]
Length = 718
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 312/752 (41%), Positives = 439/752 (58%), Gaps = 57/752 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P + +G + +ETG M RQA+ AV + +T ++ +V E DFFPL VNY
Sbjct: 3 PFVKQFKYGQHTVTLETGAMARQATAAVMASMDDTCVFVTVVAKKEVKEGQDFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L+ RLIDRP+RP +GF +E QI++ V+S +
Sbjct: 63 QERSYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFLNEIQIIATVVSVNPQ 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS VP + I RVG + D+F++NPT E + S+LDL++AG+D
Sbjct: 123 ISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQFVLNPTMSEQKQSRLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D L+EE ++ AV G + + +K GKP+ L
Sbjct: 183 KAVLMVESEADILTEEQMLAAVVFGHQQQQVVIEAIKEFAAEAGKPRWDWQAPAKNEALI 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPDL 387
++E++ L + +I K R + + ++ V T+L+EN
Sbjct: 243 NRIKELSEARLGEAYRITEKQARYEQIDVIKADVCATVLAENS----------------- 285
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE E ++D + E+ S+ +R RI+ G
Sbjct: 286 -EDESITEGKIID-----------------------------IIHELESRVVRSRILAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + G+LPR HGSA+FTRGETQSLAV TLG ++ AQ ID L + +
Sbjct: 316 PRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQSLAVTTLGTERDAQIIDEL-TGER 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +FPY +RV S IT
Sbjct: 375 TDHFLFHYNFPPYSVGETGLIGSPKRREIGHGRLAKRGVAAVMPTLEEFPYVVRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG L+L DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGASLSLMDAGVPIKAAVAGIAMGLVKEEDKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 489 HLGDMDFKVAGTRTGVTALQMDIKIEGITPEIMQIALNQAKSARMHILNVMEQAIQTPRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH MK+ P+KI +IG GG ++S+ EETG +ID +DDGTVKI A D ++
Sbjct: 549 DISDFAPRIHTMKIDPKKIKDVIGKGGAVIRSLTEETGT-SIDIDDDGTVKIAATDNNAA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++ V IY+ ++ I +G FV + +EGL HIS++S + K D
Sbjct: 608 KAVMSRIEDIVAEVEVNKIYQG-KVTRIVDFGAFVVVLGNKEGLVHISQISDERVEKVSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEA 839
++VG V VK++E++ +G++RL+ + L P+A
Sbjct: 667 YLQVGQEVMVKVVEIDRQGRIRLTMKDLQPKA 698
>gi|357386460|ref|YP_004901184.1| polyribonucleotide nucleotidyltransferase [Pelagibacterium
halotolerans B2]
gi|351595097|gb|AEQ53434.1| polyribonucleotide nucleotidyltransferase [Pelagibacterium
halotolerans B2]
Length = 712
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 313/753 (41%), Positives = 451/753 (59%), Gaps = 59/753 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ +G + + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 10 VELDWGGQPLTLETGKVARQADGAVLATLGETVVLATVVSAKTPKAGIDFFPLTVNYQEK 69
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+ AAG+ GG+FKREGR + E L RLIDRP+RP G+ +ETQ++ VL +D + P
Sbjct: 70 YFAAGKIPGGYFKREGRPTEAETLTSRLIDRPIRPLFPAGYKNETQVIITVLQHDMENEP 129
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ +S VP I RVG + ++++N + DS+LDL++AG+ DA+
Sbjct: 130 DVLAMVAASAALTISGVPFMGPIGAARVGYIDGEYVLNTPLDKKGDSKLDLVMAGTADAV 189
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E LSE++++ AV G +++ + + L E+ K P+ + + L
Sbjct: 190 LMVESEAKELSEDVMLGAVMFGHSQSQKVIDAIIKLAELAAKEPREFEPADMSA--LEGE 247
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ + EL + +K+ R A+ +++ KV IP+
Sbjct: 248 MLALIETELRDAYKNTDKMARYDAVDAVKAKVKAHF-----------------IPE---- 286
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
EG+ P+ V VFK + +K +R I++ R
Sbjct: 287 --------------EGEAAYTPEQ------------VGAVFKSLQAKVVRWNILDTKTRI 320
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RPI S G+LPR HGSA+FTRGETQ+L V TLG Q ID+LE + +
Sbjct: 321 DGRDLETVRPIVSEVGVLPRTHGSAIFTRGETQALVVATLGTADDEQFIDSLEGTYK-QN 379
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PV P+ +FPYT+RV S ITESN
Sbjct: 380 FLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAINPVRPTAEEFPYTLRVVSEITESN 439
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+K ++AG+AMG++L+ ++F +LSDI G ED G
Sbjct: 440 GSSSMATVCGTSLALMDAGVPMKKAVAGIAMGLILEGEKFA------VLSDILGDEDHLG 493
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG DG+T+ QMDIK+ GIT +MK AL QAKDGR+HIL EM K + +
Sbjct: 494 DMDFKVAGTHDGVTSLQMDIKIAGITEEIMKIALAQAKDGRKHILGEMAKAIDTARSEVG 553
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +K+ +KI +IG+GGK ++ I+E+TG + I+ EDDGTVK+++ D ++ +
Sbjct: 554 EFAPRIETLKIPTDKIREVIGTGGKVIREIVEKTGAK-INIEDDGTVKVSSSDGKQIDAA 612
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++T P VG+IY+ +K+ A +G FV ++GL HIS+L+ + K DVVK
Sbjct: 613 IKWIKSITDEPEVGEIYQGTVVKT-ADFGAFVNFFGAKDGLVHISQLAEERVGKTTDVVK 671
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
GD V VKL+ +++G++RLS + + E E
Sbjct: 672 EGDKVWVKLLGFDERGKVRLSMKVVDQETGKEK 704
>gi|269213998|ref|ZP_05983355.2| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
gi|269144760|gb|EEZ71178.1| polyribonucleotide nucleotidyltransferase [Neisseria cinerea ATCC
14685]
Length = 707
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 317/744 (42%), Positives = 441/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D LSEE+++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 192 SEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKINQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|89072579|ref|ZP_01159151.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
SKA34]
gi|89051683|gb|EAR57136.1| polyribonucleotide nucleotidyltransferase [Photobacterium sp.
SKA34]
Length = 708
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 311/758 (41%), Positives = 438/758 (57%), Gaps = 60/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G+ + +ETG M RQA+ AV V+ +T ++ SV E DFFPL VN
Sbjct: 2 NPIVKTFQYGNHTVTLETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD + + A+ +S +P + I RVG + D+F++NP+ E+E+S+LDL++AG+
Sbjct: 122 AVNPDIVTMIGTSAALTISGIPFNGPIGAARVGYINDQFVLNPSNVELEESRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA+LM+E D LSEE ++QAV G D + N + P L
Sbjct: 182 KDAVLMVESEADRLSEEQMLQAVVFGHDQQQVAINAINEFAAEVATPAWDWVAPQENTAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPD 386
+ E+A +LV+ QI K+ R + + +V IL+E
Sbjct: 242 KNKIAELAETKLVEAYQITEKMARYDRIHEIAGEVNDAILAE------------------ 283
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
D E + ++H +F ++ +R RI+ G
Sbjct: 284 -------------DAEANTKEIHT-------------------IFHDLEKTVVRGRIIAG 311
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 312 NPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDGLTGEK 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S I
Sbjct: 372 K-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSEI 430
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G E
Sbjct: 431 TESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDILGDE 484
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG +DGITA QMDIK+ GIT +M+ AL QAK R+HIL+ M P
Sbjct: 485 DHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDNAINTPR 544
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S+ AP IH MK+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A + ++
Sbjct: 545 EDISQFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTVKIAATEGTA 603
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++ I +T VG IY ++ I +G FV + +EGL HIS++S + + K
Sbjct: 604 AKEAIRRIEEITADVEVGRIY-TGKVMRIVDFGAFVSVIGTKEGLVHISQISQDRVEKVS 662
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
D +++G V VK++E++ +G++RLS + + AE P
Sbjct: 663 DYLQMGQEVQVKVLEIDRQGRIRLSMKEAVETPAAEAP 700
>gi|429744261|ref|ZP_19277763.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
020 str. F0370]
gi|429163338|gb|EKY05572.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
020 str. F0370]
Length = 701
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 318/752 (42%), Positives = 451/752 (59%), Gaps = 66/752 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA+ AV V G+T++ +V DFFPL V+Y ER AA
Sbjct: 11 YGQHTVTLETGEIARQAAAAVKVAMGDTVVLVAVTANKEVKAGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT ++E SQLDL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYLDGGYVLNPTKTQLEKSQLDLVVAGTAQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK--PKMLDTIKLPPP--ELYKHV 331
L E++++ AV G + ++ + +KA+ E+ + P++ D K P P EL V
Sbjct: 191 SEAQILPEDVMLGAVVYGHEQMQAV---IKAINELADEVNPEVWDW-KAPEPDAELVAKV 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+EIAG+ + + +I++K R ++ V L
Sbjct: 247 KEIAGDTIAEAFKIRSKQARGAKIAEAWAAVQAALI------------------------ 282
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ED + + E+ K +FK + + +R +I+ G R D
Sbjct: 283 NEDTDTLAANEI------------------------KGIFKHLEADVVRSQILAGQPRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI+ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF
Sbjct: 319 GRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNG
Sbjct: 378 MLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPEPEDFSYTMRVVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GD
Sbjct: 438 SSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFA------VLTDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GIT +M+ AL+QAK+ R HILA+M + P LS+
Sbjct: 492 MDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMKEAVDGP-QELSQ 550
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP ++ MK+ P+KI +IG GG+ +++I ETG E I+ DDGT+ I A S+E +K
Sbjct: 551 HAPRLYTMKINPDKIREVIGKGGETIRAITAETGTE-INIADDGTITIAAVSADSVEAAK 609
Query: 752 AIISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++T VG +Y +K + G V++ PG+ GL H+S+++ + + D +K
Sbjct: 610 KRIEDITAEVEVGKVYDGVVVKILDNNVGAIVDVLPGKGGLVHVSQIAHERVKEVGDYLK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
VG V VK +EV+D+G++RLS +ALL E AE
Sbjct: 670 VGQTVKVKALEVDDRGRVRLSIKALLEEPAAE 701
>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
Length = 690
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/741 (41%), Positives = 441/741 (59%), Gaps = 59/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G R + +E G + +QA+GAV V G+T + +V P E DFFPL V+++E+ A
Sbjct: 3 LGGRTLTIEAGKIAKQANGAVLVRYGDTAVVVAVTGTKTPREGVDFFPLTVDFEEKMYAV 62
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP +G++++ QI++ +S D + PD A
Sbjct: 63 GKIPGGFIKREGRPSEQAILTSRLIDRPIRPMFPEGYHNDVQIVATAVSVDPDNAPDMPA 122
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S++P IAGVRVGL+ +FI+NPT ++ + SQL+L +AG+ DAILM+E
Sbjct: 123 MIGASCALSISDIPFEGPIAGVRVGLIDGEFIINPTVEQAKISQLNLAVAGTKDAILMVE 182
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+ +SEE ++ A+ G ++++ + +V GK KM PP E+ +EE
Sbjct: 183 AGANEVSEETMLDAIWFGHGVIKQLVEFQEKIVAEIGKEKMEVPFYAPPEEMVAEIEEYG 242
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++L L NK+ R + ++ ++ ++ + +E PD
Sbjct: 243 AQKLKDALMDANKLEREENVAKVKAEIAEVF--------------LEKYPD--------- 279
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ DV + +++ K +RR I R DGR
Sbjct: 280 ---------------------------NAKDVAYITQKLVKKIVRRTISVDKIRPDGRQL 312
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D +RP+S GLL R HGS+LFTRG+TQ L V+ L + AQ +D L ++ E KR+ Y
Sbjct: 313 DEVRPVSCEVGLLARPHGSSLFTRGQTQILNVLALAPLREAQILDGLGAE-ETKRYIHHY 371
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE + +P RREIGHG LAERAL PV+PS+ DFPY IR+ S + ESNGSSSM
Sbjct: 372 NFPPYSVGETKPLRSPGRREIGHGALAERALRPVIPSEEDFPYAIRLVSEVLESNGSSSM 431
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
SVC L+L DAGVPIK +AGVAMG+V D + F IL+DI G EDA GDMDFK
Sbjct: 432 GSVCASTLSLMDAGVPIKAPVAGVAMGLVKDGEYF------TILTDIQGLEDALGDMDFK 485
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E GITA QMDIK+ GI + +AL QAK GR I+ +M++C P LS++AP
Sbjct: 486 VAGTEKGITAIQMDIKIDGINKDIFTQALAQAKRGREFIMGKMMECISEPRKELSQYAPK 545
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + V P+KI +IG GGK +K I++ETG + ID +D G V I A + + K+ +I
Sbjct: 546 ITTIHVDPDKIAKVIGPGGKMIKKIVDETGAK-IDIDDTGRVFIAAVNTEAANKAIEMIE 604
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+T VG++Y ++ + +G FVEI PG+EGL HIS+LS+ + K EDVV VGD +
Sbjct: 605 GITAEAEVGNVY-TGKVTRLMNFGAFVEILPGKEGLVHISQLSTEHVDKVEDVVSVGDEI 663
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
VK+ E+++KG++ LSR+A+L
Sbjct: 664 VVKVTEIDNKGRINLSRKAVL 684
>gi|347757869|ref|YP_004865431.1| S1 RNA binding domain-containing protein [Micavibrio
aeruginosavorus ARL-13]
gi|347590387|gb|AEP09429.1| S1 RNA binding domain protein [Micavibrio aeruginosavorus ARL-13]
Length = 715
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 315/740 (42%), Positives = 446/740 (60%), Gaps = 61/740 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G +++++ETG + RQA GAV T G T + +V A E DFFPL+V+YQE+ AA
Sbjct: 11 LGGKKVVLETGKIARQADGAVMATMGGTTVLCTVVGARSLREGQDFFPLSVHYQEKAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR + EVLV RLIDRP+RP +GF +E Q+++ V+++D + PD +A
Sbjct: 71 GKIPGGFFKREGRPSEKEVLVSRLIDRPVRPLFPEGFLNEVQVIATVVAHDMENDPDIVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A+ +S +P I RVG V ++++NPT E +S LDL++AG+ + +LM+E
Sbjct: 131 MIGVSAALTISGIPFMGPIGAARVGYVNGQYVLNPTLSERTNSVLDLVVAGTAEGVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ AV G ++ + + + L EMC K P ++ + E+
Sbjct: 191 SEAQELSEEVMLGAVMFGWNSFQTVIKNIIGLAEMCAKE---------PWDVPQARPEVV 241
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIV--ETIPDLLEDEDE 393
E+ K ++ K + P KA L + + Y E VG + + + + + +E
Sbjct: 242 --EMTKAMKAKFEAPLSKAY-------LEPIKQTRY----ELVGELKKQAVEEFVSEEKN 288
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
S+ V FK + + +R RI++ G R DGR
Sbjct: 289 ----------------------------LSKETVAAAFKTLEADVVRGRILKEGMRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
IRPI + G+LPRAHGSALFTRGETQ+L V TLG Q Q +D LE + + +RF L
Sbjct: 321 DTKTIRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTGQDEQIMDALEGEYK-QRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR+ +P RREIGHG LA RA+ P+LP +FPYT+R S ITESNGSS
Sbjct: 380 HYNFPPYSVGEAGRMSSPGRREIGHGKLAWRAINPLLPKAEEFPYTVRNVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LA+ DAGVP+ IAG+AMG++ + ++F +LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLAMMDAGVPLARPIAGIAMGLIKEGNDFA------VLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ IT +M A++QA++GR HIL EM K +S++A
Sbjct: 494 FKVAGTEKGVTALQMDIKITSITEEIMTIAVKQAREGRLHILGEMAKALTSARTEMSEYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I + V EKI +IG+GGK ++ I+E+TG + ID EDDGT+K+ A D ++E++ I
Sbjct: 554 PQIVTLTVPKEKIREVIGTGGKVIREIVEKTGTK-IDIEDDGTIKVAASDAKAIEEAVRI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T P VG IY +K+ +G FV PG++GL HISEL+S +A DVVK GD
Sbjct: 613 IRGITDDPEVGAIYDGKVVKT-TDFGAFVNFMPGKDGLVHISELASQRVAATTDVVKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRR 833
+V V LI +D+G+++LS +
Sbjct: 672 MVKVLLIGFDDRGKIKLSMK 691
>gi|386360362|ref|YP_006058607.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
gi|383509389|gb|AFH38821.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
Length = 713
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 328/770 (42%), Positives = 457/770 (59%), Gaps = 67/770 (8%)
Query: 81 DALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD 140
+ P+ PQ ++ R +++ETG +QASG+V V +T++ + ++ P E +D
Sbjct: 2 EGTPNVPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVE-AD 60
Query: 141 FFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILS 200
F PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE QI+
Sbjct: 61 FLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIV 120
Query: 201 WVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQL 260
VLS D + PD L AA A+ LS++P IA VRVGL+G F++NPT QE+E+SQL
Sbjct: 121 TVLSADQKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 261 DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI 320
DL++AGS +AILM+E + EE L+QA++ ++ I +A+ KPKM T
Sbjct: 181 DLVVAGSKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWT- 239
Query: 321 KLPPPELYKHVEE----IAGEE-LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKD 375
PP L + +E +A E L +VLQ +K R +ALS E++
Sbjct: 240 --PPESLPEEEKEALYRLALERGLSQVLQTASKGERSRALSEFAERL------------- 284
Query: 376 ETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVT 435
I E +P DG DEG P+ S F EV
Sbjct: 285 ----IAEVLPK-----------GEDGTPDEG----------KKPLYES------AFDEVV 313
Query: 436 SKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQM 495
+ LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG +
Sbjct: 314 RRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRD 373
Query: 496 AQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDND 555
Q +D+L DE ++F + Y+FPP S GEV R+ SRRE+GHG LA+RAL+ V+P + D
Sbjct: 374 EQILDDL-GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEED 432
Query: 556 FPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGT 615
FPYTIRV + ESNGSSSMA+VC GCLAL DAGVPI+ +AGVAMG+V + +
Sbjct: 433 FPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWE------ENR 486
Query: 616 PLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHIL 675
+IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R IL
Sbjct: 487 AVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREARLKIL 546
Query: 676 AEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDG 735
M P P L AP I +KV EKI L+IG GGK V++ +EE GVE +D E+DG
Sbjct: 547 DLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDIEEDG 604
Query: 736 TVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHIS 795
TV+I + DL++ ++K I +LT VG+IY + I P+G F+ + PG EGL HIS
Sbjct: 605 TVRIYSSDLNAALEAKKRIEDLTREAKVGEIYEGT-VTRITPFGAFISLFPGTEGLLHIS 663
Query: 796 ELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
+++ + + ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 664 QIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 709
>gi|269103403|ref|ZP_06156100.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163301|gb|EEZ41797.1| polyribonucleotide nucleotidyltransferase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 706
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 322/763 (42%), Positives = 443/763 (58%), Gaps = 72/763 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G+ + +ETG M RQA+ AV + +T ++ SV E DFFPL VN
Sbjct: 2 NPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD + + A+A+S +P + I RVG + D+F++NP+ E+E+S+LDL++AG+
Sbjct: 122 NVSPDIITMIGTSAALAISGIPFNGPIGAARVGFINDQFVLNPSNVELEESRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA+LM+E D LSEE ++QAV G D + + N + P D I P E
Sbjct: 182 KDAVLMVESEADRLSEEQMLQAVVFGHDQQQTVINAINEFAAEVATPA-WDWI--APEEN 238
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L + E+A +LV+ QI K+ R + + ++V +L
Sbjct: 239 TVLKNKIAELAEAKLVEAYQITEKMARYDRIHEIADEVNEVLLSE--------------- 283
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
D EV+ +VH +F ++ +RR I+
Sbjct: 284 ---------------DLEVNTKEVHT-------------------IFHDLEKTVVRRSII 309
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 AGNPRIDGREVDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTG 369
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 370 EKK-DYFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDEFPYTVRVVS 428
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 429 EITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILG 482
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG +DGITA QMDIK+ GIT +M+ AL QAK R HIL+ M
Sbjct: 483 DEDHLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARMHILSVMDNAINA 542
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P + +S+ AP IH MK+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 543 PRDDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTVKIAATD- 600
Query: 745 SSLEKSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
L+ +AI I +T VG IY ++ I +G FV + +EGL HIS++S +
Sbjct: 601 -GLQAKEAIRRIEEITADVEVGRIY-TGKVTRIVDFGAFVSVIGTKEGLVHISQISQERV 658
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
K D +K G V VK++E++ +G++RLS + A+ P AE P
Sbjct: 659 EKVSDYLKEGQEVPVKVLEIDRQGRIRLSMKEAVQP---AEQP 698
>gi|384431325|ref|YP_005640685.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
gi|333966793|gb|AEG33558.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
Length = 713
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 328/774 (42%), Positives = 454/774 (58%), Gaps = 75/774 (9%)
Query: 81 DALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD 140
+ P+ PQ ++ R +++ETG +QASG+V V +T++ + ++ P E +D
Sbjct: 2 EGTPNVPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVE-AD 60
Query: 141 FFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILS 200
F PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE QI+
Sbjct: 61 FLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIV 120
Query: 201 WVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQL 260
VLS D + PD L AA A+ LS++P IA VRVGL+G F++NPT QE+E+SQL
Sbjct: 121 TVLSADQKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 261 DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI 320
DL++AGS +AILM+E + EE L+QA++ ++ I +A+ KPKM T
Sbjct: 181 DLVVAGSKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWT- 239
Query: 321 KLPPPE---------LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGY 371
PPE LY+ E L +VLQ +K R +ALS E++
Sbjct: 240 ---PPESLPEEEKEALYRLALERG---LSQVLQTASKGERSRALSEFAERL--------- 284
Query: 372 VSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVF 431
I E +P DG DEG P+ S F
Sbjct: 285 --------IAEALPK-----------GEDGTPDEG----------KKPLYES------AF 309
Query: 432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
EV + LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 310 DEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 369
Query: 492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
+ Q +D+L DE ++F + Y+FPP S GEV R+ SRRE+GHG LA+RAL+ V+P
Sbjct: 370 TGRDEQILDDL-GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
+ DFPYTIRV + ESNGSSSMA+VC GCLAL DAGVPI+ +AGVAMG+V +
Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWE----- 483
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
+ +IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R
Sbjct: 484 -ENRAVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREAR 542
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
IL M P P L AP I +KV EKI L+IG GGK V++ +EE GVE +D
Sbjct: 543 LKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDI 600
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
E+DGTV+I + DL + ++K I +LT VG+IY + I P+G F+ + PG EGL
Sbjct: 601 EEDGTVRIYSSDLQAALEAKKRIEDLTREAKVGEIYEGT-VTRITPFGAFISLFPGTEGL 659
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ + + ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 660 LHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 709
>gi|442611760|ref|ZP_21026463.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441746505|emb|CCQ12525.1| Polyribonucleotide nucleotidyltransferase [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 706
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/765 (41%), Positives = 452/765 (59%), Gaps = 60/765 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q + + G + +ETG + RQA GAV + G+T + +V + DFFPL VN
Sbjct: 2 QAIIKEFQLGRHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAAPGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGF KREGR D E L+ RLIDRP+RP GF +E Q+++ V+S +
Sbjct: 62 YQERMYAAGRIPGGFLKREGRPSDGETLIARLIDRPIRPLFPDGFVNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+A+S +P + + RVG V ++++NPT +E+E+S+LDL++AG+
Sbjct: 122 EIQPDIVAMIGTSAALAVSGIPFNGPLGAARVGYVDGQYVLNPTLKELEESKLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++A+LM+E + LSE++++ AV G + + I V M GKP +
Sbjct: 182 ENAVLMVESEANVLSEDIMLGAVVYGHEQAQSIITAVNEFKAMAGKPNWSWSAPEKDVSF 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ VE I GE++ + +I +K+ R+ ALS+ +E ++ L DL
Sbjct: 242 AEKVESIVGEKVGEAYRITDKVARKDALSAAKELLVATLE-----------------ADL 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E E D + +V F + K +R RI+ G
Sbjct: 285 AEGESLDLQ-----------------------------EVSKQFGSLEKKIVRSRIIAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D +R + G+LPR HGSA+FTRGETQ+L TLG ++ +Q ID+L +
Sbjct: 316 KRIDGRDTDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLVGTQK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F + Y+FPP SVGEVG +G+P RREIGHG LA+R ++ V+P+ +FPY+IRV S IT
Sbjct: 376 -HHFMMHYNFPPFSVGEVGFVGSPKRREIGHGNLAKRGVQAVMPTLTEFPYSIRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL +AGVPIK S+AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGASLALMNAGVPIKASVAGIAMGLVKEGEDF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QAK R HIL M + P+
Sbjct: 489 HLGDMDFKVAGTREGVTALQMDIKIEGITKEIMQIALKQAKAARLHILGVMDEAIASPAQ 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS+ AP I+ M + P+KI +IG GG ++ + EETG I+ EDDGTVKI A D S
Sbjct: 549 ELSEFAPRIYTMNIPPKKIAEVIGKGGATIRQLTEETGT-TIEIEDDGTVKIAATDGLSA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ I LT VG +Y+ ++ I +G FV + PG++GL HIS++S+ + D
Sbjct: 608 KEAIRRIEALTAELEVGTVYQGKVVR-IVDFGAFVNVLPGKDGLVHISQISNERVTNVSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
+ VG V VK++EV+ +G++RLS + EA E+ P P G+
Sbjct: 667 HLTVGQEVTVKVLEVDRQGRVRLS----MKEA-GESAPEDAPKGE 706
>gi|284047833|ref|YP_003398172.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
fermentans DSM 20731]
gi|283952054|gb|ADB46857.1| polyribonucleotide nucleotidyltransferase [Acidaminococcus
fermentans DSM 20731]
Length = 690
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/741 (42%), Positives = 436/741 (58%), Gaps = 59/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
FG R + +ETG + +QA+GAV V GET + + D P E DFFPL V+++E+ A
Sbjct: 8 FGGRTLTIETGKIAKQANGAVLVRYGETAVVVAATGTDTPREGVDFFPLTVDFEEKMYAV 67
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF +REGR + +L RLIDRP+RP G++++ QI+ +S D + PD A
Sbjct: 68 GKIPGGFLRREGRPAETAILTSRLIDRPIRPMFPDGYHNDVQIVCTAVSVDPDNAPDIPA 127
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S++P IAGVRVGL+ +FIV PT ++ + S+L+L +AG+ DAILM+E
Sbjct: 128 MIGASCALSISDIPFEGPIAGVRVGLIDGQFIVEPTVEQAKVSELNLAVAGTKDAILMVE 187
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE+++ A+ ++++ + + GKPKM + PP EL K +E
Sbjct: 188 AGAKEVSEEVMLDAIWFAHGEIKKLVEFQEKIQAEVGKPKMDFEVYTPPEELAKEIEAYG 247
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ L +K+ R K +S +E++L +E PD
Sbjct: 248 EPKIHDALMDPDKLHRDKMVSEAKEEILAHFTE--------------LYPD--------- 284
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+E+D+ V ++ + R I R DGR
Sbjct: 285 ---------------------------NEIDIAHVVAKLVKRVFRHIITVDKIRPDGRAL 317
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D +RPIS GLL R HG +LFTRG+TQ L + L + AQ ++ L D + KR+ Y
Sbjct: 318 DEVRPISCEVGLLARPHGCSLFTRGQTQVLNCLALAPLREAQNLETLAGDIQ-KRYIHHY 376
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE + +P RREIGHG LAERAL PV+PS+ +FPYTIR+ S + ESNGSSSM
Sbjct: 377 NFPPYSVGETKPLRSPGRREIGHGALAERALLPVIPSEEEFPYTIRLVSEVLESNGSSSM 436
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS C L+L DAGVPIK ++GVAMG+V + + F IL+DI G EDA+GDMDFK
Sbjct: 437 ASTCASTLSLMDAGVPIKAPVSGVAMGLVKEGENF------TILTDIQGLEDANGDMDFK 490
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG GITA QMDIKV G+T +++ AL QAK GR IL +ML+C P L K+AP
Sbjct: 491 VAGTSKGITAIQMDIKVDGLTKDILQAALAQAKKGRAFILGKMLECIAEPRKQLKKYAPK 550
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I +KV PEKI IIG GGK +K I+E+TG + ID DDGTV I A D S + + I
Sbjct: 551 ITTIKVNPEKIKDIIGPGGKIIKKIVEDTGAQ-IDINDDGTVYIAAADSESADAAIKTIQ 609
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++T P VG IY ++ I +G FVE PGREGL HIS+L+ + K EDVV VGD +
Sbjct: 610 DITAEPEVGKIYTG-KVTRIMNFGAFVEFMPGREGLVHISQLAKERVEKVEDVVNVGDEI 668
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
VKL+E++ KG+L LSR+A L
Sbjct: 669 VVKLVEIDSKGRLNLSRKACL 689
>gi|86157534|ref|YP_464319.1| polynucleotide phosphorylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774045|gb|ABC80882.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 749
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 318/772 (41%), Positives = 455/772 (58%), Gaps = 58/772 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ G +++L+ETG + +QA G+V V G++I+ + A E DFFPL V+Y
Sbjct: 31 PIQKTATVGGKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDY 90
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QE+ AAGR G FF+REGR + E L RL+DR RP +G+ +ETQ+++ V+S+D
Sbjct: 91 QEKLFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQE 150
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ D LA+T A A+ +S++P IAGVRV VG + + NPT + D+ LD+++A S
Sbjct: 151 NDTDVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASR 210
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCG-KPKMLDTIKLPPP-- 325
DAI+M+EG +SE ++I+A+ GQ AV+ + + AL G KP+ PP
Sbjct: 211 DAIVMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRR----AFDPPKN 266
Query: 326 --ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
EL V+ + E++ + K R LS +++++L L K+E G
Sbjct: 267 DVELRAKVKALTWEKVKEAYGRDEKHDRYGRLSEIKKELLQAL-------KEEAAG---- 315
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ K + E ++K +++V ++R+ I
Sbjct: 316 -----------------------------DAAKLATIALREKEIKGYYEDVKYDYMRKMI 346
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ RR GR IR I+ GLLPR HGS+LFTRGETQ+L TLG + QR++ L
Sbjct: 347 TDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEML- 405
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ K+F L Y+FPP SVGEV + +P RREIGHG LAERAL V+P ++ FPYT+RV
Sbjct: 406 TGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFPYTVRVV 465
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + ++ ILSDI
Sbjct: 466 SDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA------ILSDIL 519
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKV G GIT+ QMDIK+GG+T ++++AL QA +GR+HIL EM K
Sbjct: 520 GDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKALS 579
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P S+S +AP I +K++PE+I IIG GGK +K I TG +I+ EDDG+V I + +
Sbjct: 580 APRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGT-SINIEDDGSVSIASPN 638
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+E++ +I LT VG IY ++ IA +G FVEI PG +GL HISELS +
Sbjct: 639 QDKVEEAIKMIRGLTQEAEVGRIYMGT-VRKIAEFGAFVEIFPGTDGLIHISELSDKRVK 697
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTK 855
DV+ G+ V VK+I V+ G++RLSR+ L ++ ++ + P G+P K
Sbjct: 698 SVSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAKKSEGTEPPKGEPAK 749
>gi|222147153|ref|YP_002548110.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium vitis S4]
gi|254782700|sp|B9JYL0.1|PNP_AGRVS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221734143|gb|ACM35106.1| polyribonucleotide nucleotidyltransferase [Agrobacterium vitis S4]
Length = 714
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 449/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV + GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKIARQADGAVLASYGETVVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+E++++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFE------PEDHS 239
Query: 330 HVE----EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E IA EL +I K R A+ +++ KV
Sbjct: 240 ALEAEMLSIAEAELRDAYKITQKADRYTAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 ---------------------KAHFFPEG--AEPKYTNEV-IGAVFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR + +R I S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL QA++GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTEAGITSLQMDIKIAGITEEIMKVALAQAQNGRKHILGEMANAITEG 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI +
Sbjct: 546 RSQLGEFAPRIEVMTIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASASGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P +G +Y +K+ A +G FV R+GL HIS+L+ + +AK
Sbjct: 605 EIEAARKWIHSIVAEPEIGVVYEGTVVKT-ADFGAFVNFFGSRDGLVHISQLAVDRVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|441503626|ref|ZP_20985628.1| Polyribonucleotide nucleotidyltransferase [Photobacterium sp. AK15]
gi|441428702|gb|ELR66162.1| Polyribonucleotide nucleotidyltransferase [Photobacterium sp. AK15]
Length = 707
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/753 (41%), Positives = 438/753 (58%), Gaps = 58/753 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G+ + +ETG M RQA+ AV V+ +T ++ SV E DFFPL VN
Sbjct: 2 NPIVKTFQYGNHTVTIETGVMARQATAAVMVSMDDTSVFVSVVGKKTAVEGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDDFKNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD + + A+A+S +P + I RVG + D+F++NP+ E+E+S+LDL++AG+
Sbjct: 122 DVQPDIVTMIGTSAALAISGIPFNGPIGAARVGYINDQFVLNPSNTELEESRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E D LSEE ++QAV G D + + + P EL
Sbjct: 182 ESAVLMVESEADRLSEEQMLQAVVFGHDQQQAVIKAINEFAAEVATPAWDWEAPAENTEL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E A LV+ QI K+ R + ++ V+ L L
Sbjct: 242 KALVAEKAEARLVEAYQITEKMARYDQVGEIKNDVVEAL--------------------L 281
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E+E+ DE + D ML S + K +R RI+ G
Sbjct: 282 AENEELDEREIRD-------------------MLGS----------LEKKVVRSRIIAGN 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L + +
Sbjct: 313 PRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGERK 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 -DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +DGITA QMDIK+ GIT +M+ AL QAK R+HIL+ M P
Sbjct: 486 HLGDMDFKVAGTDDGITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAINAPRE 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH MK+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A + ++
Sbjct: 546 DISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTVKIAATEGTAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ I +T VG IY ++ I +G FV + +EGL HIS++S + K D
Sbjct: 605 KEAIRRIEEITADVEVGRIY-TGKVMRIVDFGAFVSVIGAKEGLVHISQISQERIEKVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
+++G V VK++E++ +G++RLS + + E +
Sbjct: 664 HLEMGQEVKVKVLEIDRQGRIRLSMKEAVAEQN 696
>gi|254295410|ref|YP_003061433.1| polynucleotide phosphorylase/polyadenylase [Hirschia baltica ATCC
49814]
gi|254043941|gb|ACT60736.1| Polyribonucleotide nucleotidyltransferase [Hirschia baltica ATCC
49814]
Length = 709
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 325/751 (43%), Positives = 440/751 (58%), Gaps = 56/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I + R + +ETG + RQA GAV T GET + +V A + DFFPL VNYQE+
Sbjct: 7 VTIDWAGRPLTLETGRIARQADGAVLATYGETSVLATVVAAKKANPDLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+ AAGR GGFFKRE R + E L RLIDRP+RP + GF +ETQ++ VLSYD + P
Sbjct: 67 YYAAGRIPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNETQVVLTVLSYDMENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ +S VP I RVG ++I+NPT +M D+QLDL++AG+ DA+
Sbjct: 127 DVVAMVAASAALTVSGVPFMGPIGAARVGYKDGEYIINPTLDQMADTQLDLVVAGTQDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSEE+++ AV G ++ + + + + L E K + EL K +
Sbjct: 187 MMVESEAKELSEEVMLGAVMAGHESFQTVIDGIIDLAERSAKEPWDFQPEDKSAELAK-L 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
EE+ G ++ +IK K R A+ EK
Sbjct: 246 EELVGADISAAYKIKEKAERYAAVGEAREKAAA--------------------------- 278
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++VV E EG +SE K +FK + +K +R I++ G R D
Sbjct: 279 ----QLVVSEENPEG---------------WSEAFFKGIFKSLEAKVVRGDIIKTGVRID 319
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D +RPI +LPR HGSALFTRGETQ++ V TLG + Q ID LE + F
Sbjct: 320 GRALDQVRPILGEVSILPRTHGSALFTRGETQAICVATLGTGEDEQFIDGLEGTSK-SNF 378
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR+G RREIGHG LA RAL+ VLPS+ DFPYT+R+ S ITESNG
Sbjct: 379 MLHYNFPPYSVGEVGRMGGAGRREIGHGKLAWRALKAVLPSNEDFPYTLRLVSEITESNG 438
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LA+ DAGVPI ++G+AMG++ D D +LSDI G ED GD
Sbjct: 439 SSSMATVCGSSLAMMDAGVPITRPVSGIAMGLIKDEDGIA------VLSDILGDEDHLGD 492
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+T+ QMDIK+ GIT +M+ AL+QAK GR HIL EM K + +S
Sbjct: 493 MDFKVAGTTEGLTSLQMDIKIAGITKEIMQTALEQAKGGRAHILDEMNKALDGSRDDVSG 552
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + +KI +IG+GGK ++ I+EETG + + EDDGTVKI A D S++ +
Sbjct: 553 NAPRIVTMSIPTDKIRDVIGTGGKVIRQIVEETGAK-VSVEDDGTVKIAAVDKESIDAAY 611
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT P VG+IY +K + +G FV ++GL HIS+L+ + + DVVK
Sbjct: 612 KWIHGLTAEPEVGEIYEGKVVK-VMDFGAFVNFFGAKDGLVHISQLAEERVKQTSDVVKE 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VKL+ +D+G++RLS + + E E
Sbjct: 671 GQTVWVKLLGFDDRGKVRLSMKVVDQETGKE 701
>gi|115522221|ref|YP_779132.1| polynucleotide phosphorylase/polyadenylase [Rhodopseudomonas
palustris BisA53]
gi|122298071|sp|Q07V82.1|PNP_RHOP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115516168|gb|ABJ04152.1| Polyribonucleotide nucleotidyltransferase [Rhodopseudomonas
palustris BisA53]
Length = 721
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 317/745 (42%), Positives = 448/745 (60%), Gaps = 57/745 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I +G R + +ETG + RQA GAV T GET++ +V A P E DF PL V+Y E
Sbjct: 6 SVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPREGVDFLPLTVDYIE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAGR GG+FKREGR + E LV RLIDRP+RP + G+ +ETQ++ VLS+D +
Sbjct: 66 KTYAAGRIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVDGWRNETQVIVTVLSHDMEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ A A+ LS P I RVG + D++++NP EM ++QLDL++AG+ DA
Sbjct: 126 PDILALVATSAALTLSGAPFKGPIGAARVGFINDEYVLNPVLDEMIETQLDLVVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E L+E++++ AV G R V+A++E+ K P K
Sbjct: 186 VLMVESEAKELNEDIMLGAVMFGH---RHFQPVVQAIIELAEKAA-------KEPRDVKV 235
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++E S LE+++L ++ ++ + IP
Sbjct: 236 IDE----------------------SVLEKEILGLIEQD--------LRAAYAIP----- 260
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+D V D+ H P+ ++ + ++ + VFKE+ +K +R I++ G+R
Sbjct: 261 VKQDRYAAVGKAKDKVMAHYFPEGQEPQ---YDKLRIAGVFKELEAKIVRWNILDTGKRI 317
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +R I + G+LPRAHGSALFTRGETQ+L V TLG + Q ID+L S ++
Sbjct: 318 DGRDSTTVRQIIAEVGVLPRAHGSALFTRGETQALVVTTLGTGEDEQYIDSL-SGTYKEQ 376
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G RREIGHG LA RAL PVLP ++FPYT+RV S ITESN
Sbjct: 377 FLLHYNFPPFSVGETGRMGGTKRREIGHGKLAWRALHPVLPPHHEFPYTLRVVSEITESN 436
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED G
Sbjct: 437 GSSSMASVCGASLALMDAGVPLKRPTAGIAMGLILEGERFA------VLSDILGDEDHLG 490
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG + GIT+ QMDIK+ GIT +MK AL QAK+GR HIL EM K L
Sbjct: 491 DMDFKVAGTDHGITSLQMDIKIAGITEEIMKVALGQAKEGRIHILGEMSKALTNARAELG 550
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP I K+ +KI +IG+GGK ++ I+E+TG + ++ +DDGTVK+ + D S++ +
Sbjct: 551 EYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAK-VNIDDDGTVKVASSDGESIKAA 609
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I ++ P + IY +K + +G FV ++GL HIS+L++ + K DVVK
Sbjct: 610 IKWIKSIASDPELNAIYDGTVVK-VMEFGAFVNFFGAKDGLVHISQLAAGRVQKTSDVVK 668
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +D+G+ RLS + +
Sbjct: 669 EGDKVKVKLLGFDDRGKTRLSMKVV 693
>gi|209551633|ref|YP_002283550.1| polynucleotide phosphorylase/polyadenylase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|424916082|ref|ZP_18339446.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM597]
gi|226702681|sp|B5ZW24.1|PNP_RHILW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|209537389|gb|ACI57324.1| Polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|392852258|gb|EJB04779.1| polyribonucleotide nucleotidyltransferase [Rhizobium leguminosarum
bv. trifolii WSM597]
Length = 712
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 321/749 (42%), Positives = 448/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSELEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + +I K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELREGYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 --------------------KAHFFPEGVE--PKYTAEV-IGAVFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRAHILGEMAKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|224476402|ref|YP_002634008.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254782735|sp|B9DPE0.1|PNP_STACT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|222421009|emb|CAL27823.1| polyribonucleotide nucleotidyltransferase [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 701
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 313/748 (41%), Positives = 456/748 (60%), Gaps = 55/748 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + +R + +ETG M +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWANRPLSIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLMVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPADEATLTARLIDRPIRPLFPKGYRHDVQIINMVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + ++++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGEYVINPTVEQKEVSRLDLEVAGHRDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ ++ A+ G + E+K LV+ + +++D ++ E
Sbjct: 188 MVEAGASEITEKEMLDAIFFGHE-------EIKRLVDF--QQEIIDYLQPEKTEF----- 233
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
IP+ + + +EEKV + E G +T D+
Sbjct: 234 ----------------IPKERN-AEVEEKVTALTEEKGLKDAIQTF-----------DKK 265
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E EE + D DE + + + +EV+ + ++ + +RR+I + R DG
Sbjct: 266 EREENI-DAIRDEVVAEFEDEENPDNDEVIAEVNS--ILNDLVKEEVRRQIADEKVRPDG 322
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L +++E KRF
Sbjct: 323 RKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGAMSEYQLIDGLGTEEE-KRFM 381
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYT+R+ S + ESNGS
Sbjct: 382 HHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTKDFPYTVRIVSEVLESNGS 441
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA GDM
Sbjct: 442 SSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNY------TILTDIQGMEDALGDM 495
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E GITA QMDIK+ G+T ++++AL+QA+ GR IL ML+ P LS +
Sbjct: 496 DFKVAGTEKGITAIQMDIKIDGLTREIIEEALEQARVGRLTILNHMLETIDQPRPELSAY 555
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + M +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +++
Sbjct: 556 APKVETMTIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQDMINRARE 614
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II ++T VG +Y N +++ I YG FVE+ PG++ L HIS++++ + K EDV+K+G
Sbjct: 615 IIEDITREAEVGQVY-NAKVRRIEKYGTFVELFPGKDALLHISQIANQRINKVEDVLKLG 673
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D ++VK+ E++DKG++ S RALL + D
Sbjct: 674 DTIEVKVTEIDDKGRVNASHRALLNKED 701
>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
Length = 704
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/743 (40%), Positives = 445/743 (59%), Gaps = 58/743 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQASG+V VT +T++ +V A P FFPL V+Y E+F AA
Sbjct: 11 WGNHTVTLETGEIARQASGSVLVTIDDTMVLATVVAAREPKPGQSFFPLTVDYFEKFYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L RLIDRP+RP +GF +E Q++ VLS + D A
Sbjct: 71 GRIPGGFFKREGRPTEKETLTARLIDRPIRPLFPEGFMNEVQVVLTVLSSNPEIDADIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S VP + + RVG + ++++NP+ ++++S+LDL++AG+D A+LM+E
Sbjct: 131 MIGASAALAISGVPFNGPVGAARVGYIDGQYVLNPSASQLKESKLDLVVAGTDQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSE++++ AV G + ++ + ++ LVE GK + T L + V +A
Sbjct: 191 SEASELSEDVMLGAVVFGHEQMQTVIQAIEELVEAGGKAEWEWTAPEKNTALIERVHGLA 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
G+ + +++ K R + + +E
Sbjct: 251 GDAMRDAYKLRVKQERSQRIKQIE------------------------------------ 274
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
DV + + ++ P + +V + E+ S +R +I+ G R DGR
Sbjct: 275 ----------ADVQAQLAAEENPP---AATEVGDILFELQSSIVRNQILSGEPRIDGRDT 321
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPIS R G+LPRAHGSALFTRGETQ+L V TLG + Q ID + + + +RF +QY
Sbjct: 322 RTVRPISIRTGVLPRAHGSALFTRGETQALVVATLGTARDEQIIDAI-TGEYRERFMMQY 380
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GRIG P RRE+GHG LA+RA+ ++PS DF Y+IR+ S ITESNGSSSM
Sbjct: 381 NMPPYATGETGRIGTPKRREVGHGRLAKRAITALVPSQEDFAYSIRLVSEITESNGSSSM 440
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP++ +AG+AMG++ + ++F +L+DI G ED GDMDFK
Sbjct: 441 ASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFA------VLTDILGDEDHLGDMDFK 494
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E G+TA QMDIK+ GIT +M+ AL QA++ R HIL +M + P LS AP
Sbjct: 495 VAGTEQGVTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEAIPAARTELSDFAPR 554
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
++ MK+ PE+I +IG GG +++I EETG ID +DDG++ I A D + +++ I+
Sbjct: 555 MYQMKINPERIRDVIGKGGATIRAITEETGT-TIDIQDDGSITIAAVDAEAARRAQQRIA 613
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+LT +G IY N + I +G V++ PGR+GL H+S+++ + K ED VK G V
Sbjct: 614 DLTAEVEIGKIY-NGTVLKILEFGAIVQVLPGRDGLLHVSQIAQERVNKVEDYVKEGQSV 672
Query: 816 DVKLIEVNDKGQLRLSRRALLPE 838
VK+IE +DKG+LRLS +A+ E
Sbjct: 673 RVKVIEADDKGRLRLSMKAVAIE 695
>gi|730350|sp|P41121.1|PNP_PHOLU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=CAP87K; AltName: Full=Polynucleotide phosphorylase;
Short=PNPase
gi|561531|emb|CAA53671.1| polynucleotide phosphorylase [Photorhabdus luminescens]
Length = 709
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 315/760 (41%), Positives = 444/760 (58%), Gaps = 61/760 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKAGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E LV RLIDRPLRP +GF +E +I++ V+S +
Sbjct: 63 YQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVRIVATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+ALS +P + I RVG + D++++NPT+ E+++S+LDL+++G+
Sbjct: 123 QINPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
A+LM+E D L+EE ++ AV G D + + + + AL GK K D + P +
Sbjct: 183 AGAVLMVESEADLLTEEQMLGAVVFGHDQQQVVIDNINALAAEAGKEKW-DWVPEPVNQA 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L+ V E+A L +I K R + +++++V L E +DET
Sbjct: 242 LHDRVAELAESRLGDAYRITEKQERYAQVDAIKDEVTAALLE-----QDET--------- 287
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
E ++ + + +R R++ G
Sbjct: 288 -----------------------------------LEEAEIHEILGSLEKNVVRSRVLSG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 EPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGE- 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV S I
Sbjct: 372 RTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G E
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+ +GI+A QMDIK+ GIT +M+ AL QAK R HIL+ M + P
Sbjct: 486 DHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQAITTPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+ +S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 546 DDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEK 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ + + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 605 AKHAISRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVA 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENPP 845
D ++VG VK++E++ +G++RLS + A A E PP
Sbjct: 664 DYLQVGQETSVKVLEIDRQGRVRLSIKEATAGTAVEEAPP 703
>gi|238918428|ref|YP_002931942.1| polyribonucleotide nucleotidyltransferase, putative [Edwardsiella
ictaluri 93-146]
gi|259534121|sp|C5BFC1.1|PNP_EDWI9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|238867996|gb|ACR67707.1| polyribonucleotide nucleotidyltransferase, putative [Edwardsiella
ictaluri 93-146]
Length = 707
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 322/757 (42%), Positives = 445/757 (58%), Gaps = 70/757 (9%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P K +G + +ETG M RQA+ AV VT +T ++ +V A E DFFPL VNY
Sbjct: 4 PTVRKFQYGQHTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAREGQDFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 64 QERAYAAGRFPGGFFRREGRPGEGETLTARLIDRPIRPLFPEGFLNEVQVVATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPT E++ S+LDL++AG+D
Sbjct: 124 VSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKQSRLDLVVAGTD 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-- 326
+A+LM+E D LSE+ ++ AV G + + + +KAL GKP+ + PE
Sbjct: 184 NAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIENIKALAAEVGKPRW----EWHAPEVN 239
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L + V E+A L + I K R + ++E V I
Sbjct: 240 VALQRRVAEMAEARLGEAYHITEKQARYAKVDEIKESV---------------------I 278
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
DLL ++D +D G++ + + +R R++
Sbjct: 279 ADLLAEDDA---------LDAGEI-------------------SDILGALEKAVVRGRVL 310
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 311 RGEPRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMG 370
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS + FPYT+RV S
Sbjct: 371 E-RTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPSQDAFPYTVRVVS 429
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G
Sbjct: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNF------VVLSDILG 483
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 484 DEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINA 543
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P +S+ AP IH +K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 544 PRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDG 602
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+ + I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 603 DKAKHAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D +++G V VK++EV+ +G++RLS + EA+A
Sbjct: 662 VTDYLQMGQEVAVKVLEVDRQGRVRLS----IKEANA 694
>gi|387887760|ref|YP_006318058.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae DSM
4481]
gi|414594222|ref|ZP_11443861.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae NBRC
105725]
gi|386922593|gb|AFJ45547.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae DSM
4481]
gi|403194812|dbj|GAB81513.1| polyribonucleotide nucleotidyltransferase [Escherichia blattae NBRC
105725]
Length = 710
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/746 (41%), Positives = 435/746 (58%), Gaps = 58/746 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQAS AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQASAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADELKTSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E D LSE+ ++ AV G D + + +KALV GKP+ + L
Sbjct: 183 DSAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALVNEAGKPRWDWQPEAVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + ++ +V+ L ++DET+
Sbjct: 243 NARVGALAESRLSDAYRITDKQERYAQVDLIKSEVIATLK-----AEDETL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
DE+E E+ + +R R++ G
Sbjct: 289 --DENELGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L +
Sbjct: 314 PRIDGREKDMIRALDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQTLDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S IT
Sbjct: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTMDEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KNAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
+ +G V VK++EV+ +G++RLS +
Sbjct: 665 YLHMGQEVPVKVLEVDRQGRVRLSMK 690
>gi|187471092|sp|Q2IQ01.2|PNP_ANADE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 721
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 318/772 (41%), Positives = 455/772 (58%), Gaps = 58/772 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ G +++L+ETG + +QA G+V V G++I+ + A E DFFPL V+Y
Sbjct: 3 PIQKTATVGGKEVLLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QE+ AAGR G FF+REGR + E L RL+DR RP +G+ +ETQ+++ V+S+D
Sbjct: 63 QEKLFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ D LA+T A A+ +S++P IAGVRV VG + + NPT + D+ LD+++A S
Sbjct: 123 NDTDVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRADADLDVVMAASR 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCG-KPKMLDTIKLPPP-- 325
DAI+M+EG +SE ++I+A+ GQ AV+ + + AL G KP+ PP
Sbjct: 183 DAIVMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKPRR----AFDPPKN 238
Query: 326 --ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
EL V+ + E++ + K R LS +++++L L K+E G
Sbjct: 239 DVELRAKVKALTWEKVKEAYGRDEKHDRYGRLSEIKKELLQAL-------KEEAAG---- 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ K + E ++K +++V ++R+ I
Sbjct: 288 -----------------------------DAAKLATIALREKEIKGYYEDVKYDYMRKMI 318
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ RR GR IR I+ GLLPR HGS+LFTRGETQ+L TLG + QR++ L
Sbjct: 319 TDERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEML- 377
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ K+F L Y+FPP SVGEV + +P RREIGHG LAERAL V+P ++ FPYT+RV
Sbjct: 378 TGMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFPYTVRVV 437
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + ++ ILSDI
Sbjct: 438 SDIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA------ILSDIL 491
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKV G GIT+ QMDIK+GG+T ++++AL QA +GR+HIL EM K
Sbjct: 492 GDEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTREILEQALSQAAEGRKHILGEMAKALS 551
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P S+S +AP I +K++PE+I IIG GGK +K I TG +I+ EDDG+V I + +
Sbjct: 552 APRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGT-SINIEDDGSVSIASPN 610
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+E++ +I LT VG IY ++ IA +G FVEI PG +GL HISELS +
Sbjct: 611 QDKVEEAIKMIRGLTQEAEVGRIYMGT-VRKIAEFGAFVEIFPGTDGLIHISELSDKRVK 669
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTK 855
DV+ G+ V VK+I V+ G++RLSR+ L ++ ++ + P G+P K
Sbjct: 670 SVSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAKKSEGTEPPKGEPAK 721
>gi|402852109|ref|ZP_10900205.1| Polyribonucleotide nucleotidyltransferase [Rhodovulum sp. PH10]
gi|402497625|gb|EJW09441.1| Polyribonucleotide nucleotidyltransferase [Rhodovulum sp. PH10]
Length = 715
Score = 556 bits (1434), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/744 (42%), Positives = 445/744 (59%), Gaps = 57/744 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R++++ETG + RQA GAV T GET + + P DF PL VNYQE+
Sbjct: 1 MEIDWAGRKLVLETGRIARQADGAVLATYGETTVLATAVAEKTPRPGIDFMPLTVNYQEK 60
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAGR GGFFKREGR + E LV RLIDRP+RP G+ ++TQI+ LS+D + P
Sbjct: 61 TYAAGRIPGGFFKREGRPSEKETLVSRLIDRPIRPLFANGWRNDTQIIVTTLSHDLENDP 120
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ +S +P + RV + ++F++NP EM +SQLDL++AG+ DA+
Sbjct: 121 DIVAMVAASAALTISGLPFMGPVGAARVSFINNEFVLNPQLDEMTESQLDLVVAGTQDAV 180
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L EE+++ AV G R ++A++++ K
Sbjct: 181 LMVESEAKELPEEVMLGAVMFGH---RHFQPVIEAIIQLAEK------------------ 219
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A +E +++ N ++LE ++L ++ ++ + IP +
Sbjct: 220 ---AAKEPRELITQDN--------AALESEMLGVIEQD--------LRAAYAIP-----Q 255
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++ VD + H P+ TP + E+ V VF + +K +R I++ GRR D
Sbjct: 256 KQERYKAVDAARAKVKAHFFPEG--GTPA-YDELRVMGVFHHLEAKIVRWNILDTGRRID 312
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q ID LE + + F
Sbjct: 313 GRDVKTVRPIVAEAGVLPRAHGSALFTRGETQALVVATLGTGEDEQFIDALEGTYK-ETF 371
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GRIG+P RREIGHG LA RA+ PVLP ++FPYTIRV S ITESNG
Sbjct: 372 MLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPLHHEFPYTIRVVSEITESNG 431
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP++ AG+AMG++ + D F +L+DI G ED GD
Sbjct: 432 SSSMATVCGTSLALMDAGVPLRAPTAGIAMGLIKEGDRFA------VLTDILGDEDHLGD 485
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+T+ QMDIK+ GIT +M+ AL QAKDGR HIL EM K L +
Sbjct: 486 MDFKVAGTEKGVTSLQMDIKIAGITEEIMRVALAQAKDGRHHILGEMSKALTSARAQLGE 545
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I ++ + +KI +IGSGGK ++ I+E+TG + ID DDGTVK+ + S++ +
Sbjct: 546 YAPRIEVLTIPVDKIREVIGSGGKVIREIVEKTGAK-IDISDDGTVKVASASGESIKSAI 604
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY +K + +G FV ++GL HIS+L+ + K +VVK
Sbjct: 605 NWIKSIASEPEVGQIYEGTVVK-VMDFGAFVNFFGSKDGLVHISQLAPRRVQKTSEVVKE 663
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS RA+
Sbjct: 664 GDKVKVKLLGFDERGKVRLSMRAV 687
>gi|304320664|ref|YP_003854307.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
bermudensis HTCC2503]
gi|303299566|gb|ADM09165.1| Pnp, polyribonucleotide nucleotidyltransferase [Parvularcula
bermudensis HTCC2503]
Length = 708
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/743 (42%), Positives = 433/743 (58%), Gaps = 63/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ R + +ETG + RQA GAV T GET + +V DFFPL VNYQE+ AA
Sbjct: 11 WAGRPLTLETGRIARQADGAVLATYGETTVLATVVGQKEAKPGQDFFPLTVNYQEKTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L RLIDRP+RP GF +E Q++ V+S+D + PD +A
Sbjct: 71 GRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAPGFKNEVQVVCTVMSHDLENDPDVVA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ +S +P I RV +++VNPT ++E S+LDL++AG+ DA++M+E
Sbjct: 131 MIAASAALTISGIPFMGPIGAARVAYKDGEYLVNPTGADLEGSRLDLVMAGTADAVMMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH---VE 332
D LSE++++ AV G A +E+ + + + E C K + PP+ VE
Sbjct: 191 SEADELSEDIMLGAVIKGHAAAKEMIDHIISFAEQCAK----EPWDYQPPDFSDQKPRVE 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E A L Q +K R A+ ++ L+
Sbjct: 247 EAARSGLAAAYQQTDKTQRVAAIGEAKQAAYDALT------------------------- 281
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
GD P P + V + K++ S+ +R I+EG R DG
Sbjct: 282 -------------GDDAADPMD----PAV-----VATLLKQIESEIVRNAIIEGRPRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI S G+LPR HGSALFTRGETQ++ V TLG Q ID LE + + F
Sbjct: 320 RDTKTVRPIESEVGILPRTHGSALFTRGETQAIVVATLGTADDEQFIDALEGTYK-ENFL 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ VLPS +FPY IR+ S ITESNGS
Sbjct: 379 LHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRAVLPSQEEFPYVIRLVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCG LA+ DAGVP+K ++AG+AMG++L+ ++F +LSDI G ED GDM
Sbjct: 439 SSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGEQFA------VLSDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G+T+ QMDIKV GIT +M+ AL QAKDGR HIL EM K L +
Sbjct: 493 DFKVAGTSEGVTSLQMDIKVAGITEEIMQTALGQAKDGRMHILGEMNKALSASRGELGEF 552
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I MK+ +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + + S ++ +
Sbjct: 553 APRIETMKIPVDKIRDVIGSGGKVIREIVEKTGAK-INVEDDGTIKIASSEHSQIDAAVK 611
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I LT P VG++Y+ +K++ +G FV R+GL HIS+L+ K DVVK G
Sbjct: 612 WIRGLTDEPEVGEVYKGKVVKTV-DFGAFVNFFGARDGLVHISQLNDGRPEKTTDVVKEG 670
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
D V VKL+ +D+G++RLS + +
Sbjct: 671 DEVFVKLLGFDDRGKVRLSMKVV 693
>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
gi|75424073|sp|Q9ZAE1.1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81405907|sp|Q72JJ8.1|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
Length = 713
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 327/774 (42%), Positives = 455/774 (58%), Gaps = 75/774 (9%)
Query: 81 DALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD 140
+ P+ PQ ++ R +++ETG +QASG+V V +T++ + ++ P E +D
Sbjct: 2 EGTPNVPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVE-AD 60
Query: 141 FFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILS 200
F PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE QI+
Sbjct: 61 FLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIV 120
Query: 201 WVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQL 260
VLS D + PD L AA A+ LS++P IA VRVGL+G F++NPT QE+E+SQL
Sbjct: 121 TVLSADQKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 261 DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI 320
DL++AGS +AILM+E + EE L+QA++ ++ I +A+ KPKM T
Sbjct: 181 DLVVAGSKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWT- 239
Query: 321 KLPPPE---------LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGY 371
PPE LY+ E L +VLQ +K R +AL+ E++
Sbjct: 240 ---PPESLPEEEKEALYRLALERG---LSQVLQTASKGERSRALAEFAERL--------- 284
Query: 372 VSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVF 431
I E +P DG DEG P+ S F
Sbjct: 285 --------IAEALPK-----------GEDGTPDEG----------KKPLYES------AF 309
Query: 432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
EV + LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 310 DEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 369
Query: 492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
+ Q +D+L DE ++F + Y+FPP S GEV R+ SRRE+GHG LA+RAL+ V+P
Sbjct: 370 TGRDEQILDDL-GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
+ DFPYTIRV + ESNGSSSMA+VC GCLAL DAGVPI+ +AGVAMG+V +
Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWE----- 483
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
+ +IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R
Sbjct: 484 -ENRAVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREAR 542
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
IL M P P L AP I +KV EKI L+IG GGK V++ +EE GVE +D
Sbjct: 543 LKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDI 600
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
E+DGTV+I + DL++ ++K I +LT VG+IY + I P+G F+ + PG EGL
Sbjct: 601 EEDGTVRIYSSDLNAALEAKKRIEDLTREAKVGEIYEGT-VTRITPFGAFISLFPGTEGL 659
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ + + ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 660 LHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 709
>gi|37528344|ref|NP_931689.1| polynucleotide phosphorylase/polyadenylase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81418115|sp|Q7MYZ0.1|PNP_PHOLL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|36787782|emb|CAE16897.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) (PNPase) (CAP87K) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 709
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 312/759 (41%), Positives = 440/759 (57%), Gaps = 58/759 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V +T ++ +V E DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E LV RLIDRPLRP GF +E QI++ V+S +
Sbjct: 63 YQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A +ALS +P + I RVG + D++++NPT+ E+++S+LDL+++G+
Sbjct: 123 QVNPDIVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVSGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
A+LM+E D L+EE ++ AV G + + + + + AL GK K + L
Sbjct: 183 AGAVLMVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V +A + L +I K R + +++E+V L E
Sbjct: 243 HDRVAGLAEDRLGDAYRITEKQERYAQVDAIKEEVTAALLEQ------------------ 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D ++E ++H + + K +R R++ G
Sbjct: 285 ------------DEALEEAEIH-------------------EILGSLEKKVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 314 PRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV S IT
Sbjct: 373 TDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKANEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GI+A QMDIK+ GIT +M+ AL QAK R HIL+ M + P N
Sbjct: 487 HLGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQAINSPRN 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAISRIEEITAEIEVARIY-TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVAD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPV 846
++VG V VK++E++ +G++RLS + E+ PV
Sbjct: 665 YLQVGQEVSVKVLEIDRQGRVRLSIKEATVGVIVEDTPV 703
>gi|148259386|ref|YP_001233513.1| polynucleotide phosphorylase/polyadenylase [Acidiphilium cryptum
JF-5]
gi|326402607|ref|YP_004282688.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
AIU301]
gi|187470957|sp|A5FVG2.1|PNP_ACICJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|146401067|gb|ABQ29594.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium cryptum
JF-5]
gi|325049468|dbj|BAJ79806.1| polyribonucleotide nucleotidyltransferase [Acidiphilium multivorum
AIU301]
Length = 717
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 318/752 (42%), Positives = 441/752 (58%), Gaps = 63/752 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F + ++ +G R++++ETG + RQA GAV + G+T++ +V A DFFPL
Sbjct: 3 FDKYFRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKPGQDFFPLT 62
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQE+F AAGR GGFFKREGR + E L RLIDRP+RP GF +E Q++ VLS+
Sbjct: 63 VNYQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSH 122
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
D + PD +++ AA A+ LS +P + R+G + ++I+NPT+ ++ +S+LDL+LA
Sbjct: 123 DLENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVLA 182
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP 324
G+++ +LM+E LSEE ++ AV G A + + + L E K P L
Sbjct: 183 GTEEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDEE 242
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVET 383
L V+E+A E L + K R + + +++ VL T+ +E V K
Sbjct: 243 KALAARVDELAREGLRAAYAEREKTARHEKIGAVKAAVLETLAAEERSVEK--------- 293
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
K +FKE+ + +R I
Sbjct: 294 -------------------------------------------AKGMFKELEADIVRNAI 310
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
++ G R DGR +RPI + G+LPR HGSALFTRGETQ+L V TLG Q Q +D +E
Sbjct: 311 LDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGTAQDEQIVDAIE 370
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ +RF L Y+FPP SVGE GR+G+P RRE+GHG LA RA+ P+LP + FPYT+RV
Sbjct: 371 GEYR-ERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPGKDKFPYTLRVV 429
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + F +LSDI
Sbjct: 430 SEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDKGFA------VLSDIL 483
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG E G+T+ QMDIK+ IT +MK AL QAKDGR HIL EM K
Sbjct: 484 GDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGRLHILGEMSKALT 543
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+S +AP I ++ V +KI +IG+GGK ++ I+E +G + ID EDDGT+KI A
Sbjct: 544 GAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCK-IDIEDDGTIKIAATS 602
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+K+ I +LT P VG IY +K IA +G FV R+GL HISEL+ +A
Sbjct: 603 DEQAQKAIDRIRSLTSEPEVGQIYTGKVVK-IADFGAFVNFFGARDGLVHISELAQGRVA 661
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ DVVKVGD V VK+I ++D+G+++LS R +
Sbjct: 662 RTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVV 693
>gi|337264552|ref|YP_004608607.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
opportunistum WSM2075]
gi|336024862|gb|AEH84513.1| polyribonucleotide nucleotidyltransferase [Mesorhizobium
opportunistum WSM2075]
Length = 715
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 317/745 (42%), Positives = 446/745 (59%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET + +V P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP G+ ++TQI+ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP + G RVG + ++++NP EM++S+LDL++AG+ DA+
Sbjct: 127 DILSIVATSAALTLSGVPFMGPVGGARVGYINGEYVLNPHIDEMQESKLDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L EE+++ AV G + + + + L E+ K P+ D L
Sbjct: 187 LMVESEAKELGEELMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPR--DFTAPDYSVLEAE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ +I G+EL + +K R A+ +++ KV +
Sbjct: 245 MLKIVGDELSNAYKNVDKQKRYAAVDAVKAKVKAAFAPA--------------------- 283
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
EGD +++ ++ + S VFKE+ +K +R I++ G R
Sbjct: 284 --------------EGD-----EAKYTSEQIGS------VFKELQAKVVRWNILDTGSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSALFTRGETQ+L V TLG + Q +D+L + ++
Sbjct: 319 DGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYK-EK 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS + FPYT+RV S ITESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSADQFPYTLRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG GIT+ QMDIK+ GIT +MK AL QAKDGR+HIL EM L
Sbjct: 492 DMDFKVAGTTSGITSLQMDIKIEGITEEIMKIALDQAKDGRQHILGEMAHALTGARPELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I + P VG+IY +K+ A +G FV R+GL HIS+L++ +AK DVVK
Sbjct: 611 KKWIHTIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLANERVAKTSDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G++RLS + +
Sbjct: 670 EGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|402826757|ref|ZP_10875917.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. LH128]
gi|402259713|gb|EJU09916.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. LH128]
Length = 767
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 312/753 (41%), Positives = 439/753 (58%), Gaps = 60/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVSMEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++SAAGR GGFFKRE + E L RLIDRP+RP +GFY+E +++ VLSYDG
Sbjct: 66 KYSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVLSYDGETE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNP-TTQEMEDSQLDLLLAGSDD 269
D +A+ AA A+ +S VP I RVG V ++ +NP T + D +LDL++A + D
Sbjct: 126 ADIVAMIAASAALTISGVPFMGPIGAARVGFVDGEYTLNPKQTAALTDGRLDLVVAATGD 185
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E L+EE ++ AV D ++++ N + L E K + ++
Sbjct: 186 AVMMVESEAKELTEEEMLGAVVFAHDEIKKVVNLIIDLAEKAAKEPWDIDLSDNTADIKA 245
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+++ G+++ ++ +K R AL++ K S
Sbjct: 246 KLKKAVGKDVTAAYKLTDKSARSNALNAARAKAKEAFS---------------------- 283
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
GE TP L V +K K++ + +R I++ G+R
Sbjct: 284 -----------GE---------------TPQL-QMVAIK-TMKKLEADIVRGAILKDGKR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +RPI + G LPR HGSALFTRGETQS+ TLG K Q ID LE
Sbjct: 316 IDGRTLEQVRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTKDAEQMIDGLEGLS-YS 374
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ DFPYTIRV S ITES
Sbjct: 375 SFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDFPYTIRVLSDITES 434
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCGG L++ DAGVP+ ++G+AMG++L+ +F +LSDI G ED
Sbjct: 435 NGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEGKDFA------VLSDILGDEDHL 488
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GIT QMDIK+ GIT +M KAL+QAK GR HIL EM K L
Sbjct: 489 GDMDFKVAGTEVGITTMQMDIKIAGITREIMAKALEQAKAGRAHILGEMTKALGSSRTEL 548
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D++ +E
Sbjct: 549 SAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSDIAQIEA 607
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I + VG +Y+ ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 608 AKKWILGIVEEAEVGKVYQG-KVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVV 666
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
K G V VK++E++ +G++RLS R + E AE
Sbjct: 667 KEGQEVYVKVLEIDQRGKVRLSMRVVDQETGAE 699
>gi|86355771|ref|YP_467663.1| polynucleotide phosphorylase/polyadenylase [Rhizobium etli CFN 42]
gi|123738432|sp|Q2KE00.1|PNP_RHIEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|86279873|gb|ABC88936.1| polyribonucleotide nucleotidyltransferase protein [Rhizobium etli
CFN 42]
Length = 712
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 318/749 (42%), Positives = 448/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLENN 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A+ A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDILSMIASSAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L E++++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELPEDVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDYSELEG-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + +I K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELREAYKITQKADRYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ ++ +V +FK + +K +R I++
Sbjct: 277 --------------------KAHFLPEEGEAK---YTAEEVGAIFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLETVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QAK GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAKGGRAHILGEMAKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 606 IEAARKWIHSIVAEPEIGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|338980127|ref|ZP_08631436.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium sp. PM]
gi|338208961|gb|EGO96771.1| Polyribonucleotide nucleotidyltransferase [Acidiphilium sp. PM]
Length = 716
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 318/752 (42%), Positives = 441/752 (58%), Gaps = 63/752 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F + ++ +G R++++ETG + RQA GAV + G+T++ +V A DFFPL
Sbjct: 2 FDKYFRKELDWGGRKLILETGKVARQADGAVVASYGDTVVLATVVGARSVKPGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQE+F AAGR GGFFKREGR + E L RLIDRP+RP GF +E Q++ VLS+
Sbjct: 62 VNYQEKFYAAGRIPGGFFKREGRPTERETLTSRLIDRPIRPLFPHGFRNEVQVIVNVLSH 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
D + PD +++ AA A+ LS +P + R+G + ++I+NPT+ ++ +S+LDL+LA
Sbjct: 122 DLENEPDIVSLVAASAALTLSGIPFFGPVGAARIGYIDGEYILNPTSAQIAESRLDLVLA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPP 324
G+++ +LM+E LSEE ++ AV G A + + + L E K P L
Sbjct: 182 GTEEGVLMVESEAHELSEETMLGAVTFGHAAFQPVIQAIIELAEHAAKDPWPLVEESDEE 241
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVET 383
L V+E+A E L + K R + + +++ VL T+ +E V K
Sbjct: 242 KALAARVDELAREGLRAAYAEREKTARHEKIGAVKAAVLETLAAEERSVEK--------- 292
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
K +FKE+ + +R I
Sbjct: 293 -------------------------------------------AKGMFKELEADIVRNAI 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
++ G R DGR +RPI + G+LPR HGSALFTRGETQ+L V TLG Q Q +D +E
Sbjct: 310 LDNGIRIDGRDTRTVRPILAEVGVLPRTHGSALFTRGETQALVVATLGTAQDEQIVDAIE 369
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ +RF L Y+FPP SVGE GR+G+P RRE+GHG LA RA+ P+LP + FPYT+RV
Sbjct: 370 GEYR-ERFLLHYNFPPFSVGETGRVGSPGRREVGHGKLAWRAIHPLLPGKDKFPYTLRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + F +LSDI
Sbjct: 429 SEITESNGSSSMATVCGTSLALMDAGVPLPRPVAGIAMGLIKEDKGFA------VLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG E G+T+ QMDIK+ IT +MK AL QAKDGR HIL EM K
Sbjct: 483 GDEDHLGDMDFKVAGTEAGVTSLQMDIKITSITPEIMKIALDQAKDGRLHILGEMSKALT 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+S +AP I ++ V +KI +IG+GGK ++ I+E +G + ID EDDGT+KI A
Sbjct: 543 GAREGVSANAPRITVINVPKDKIRDVIGTGGKVIREIVEYSGCK-IDIEDDGTIKIAATS 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+K+ I +LT P VG IY +K IA +G FV R+GL HISEL+ +A
Sbjct: 602 DEQAQKAIDRIRSLTSEPEVGQIYTGKVVK-IADFGAFVNFFGARDGLVHISELAQGRVA 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ DVVKVGD V VK+I ++D+G+++LS R +
Sbjct: 661 RTGDVVKVGDTVKVKMIGLDDRGKVKLSMRVV 692
>gi|21231940|ref|NP_637857.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767933|ref|YP_242695.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. 8004]
gi|81306090|sp|Q4UW98.1|PNP_XANC8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81793552|sp|Q8P7V1.1|PNP_XANCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21113669|gb|AAM41781.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573265|gb|AAY48675.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. 8004]
Length = 704
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 447/743 (60%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE--LYKHVE 332
LSEE+++ AV G ++++ N + L VE KP T P L ++
Sbjct: 190 SEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKP---STWVAPAKNTALISALK 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E G +L Q+++K+ RR A+S++++ VL L+ G V+
Sbjct: 247 EAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLA--GRVA------------------- 285
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
EG +S ++ F E+ +R ++E R DG
Sbjct: 286 -----------SEG---------------WSSAELSKEFGELEYHTMRDSVLETKVRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + + + + F
Sbjct: 320 RALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK-ENFL 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGS
Sbjct: 379 FHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCG LAL DAGVP+K +AG+AMG+V + D F ++LSDI G ED GDM
Sbjct: 439 SSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRF------VVLSDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM K P LS +
Sbjct: 493 DFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALTTPRQELSDY 552
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 553 APRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKS 611
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K G
Sbjct: 612 RIEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEG 670
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
DLV VK++EV+ +G++RLS +A+
Sbjct: 671 DLVRVKVLEVDKQGRIRLSIKAV 693
>gi|384428462|ref|YP_005637822.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. raphani 756C]
gi|341937565|gb|AEL07704.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. raphani 756C]
Length = 704
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 447/743 (60%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE--LYKHVE 332
LSEE+++ AV G ++++ N + L VE KP T P L ++
Sbjct: 190 SEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKP---STWVAPAKNTALISALK 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E G +L Q+++K+ RR A+S++++ VL L+ G V+
Sbjct: 247 EAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLA--GRVA------------------- 285
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
EG +S ++ F E+ +R ++E R DG
Sbjct: 286 -----------SEG---------------WSSAELSKEFGELEYHTMRDSVLETKVRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + + + + F
Sbjct: 320 RALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK-ENFL 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGS
Sbjct: 379 FHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCG LAL DAGVP+K +AG+AMG+V + D F ++LSDI G ED GDM
Sbjct: 439 SSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRF------VVLSDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM K P LS +
Sbjct: 493 DFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALTTPRQELSDY 552
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 553 APRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKS 611
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K G
Sbjct: 612 RIEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDRLKEG 670
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
DLV VK++EV+ +G++RLS +A+
Sbjct: 671 DLVRVKVLEVDKQGRIRLSIKAV 693
>gi|149200561|ref|ZP_01877570.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
gi|149136358|gb|EDM24802.1| polynucleotide phosphorylase/polyadenylase [Lentisphaera araneosa
HTCC2155]
Length = 696
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/749 (41%), Positives = 445/749 (59%), Gaps = 62/749 (8%)
Query: 91 SVKIPFGD-RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
SV + GD R I +ETG M A+ AVTVT GET++ + C + P DFFPL V Y+
Sbjct: 6 SVTVDLGDNRPITIETGKMALLANAAVTVTQGETVVLVTAC-SSAPRAGIDFFPLMVAYR 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++SAAG+ GGF KRE R +HE+L R+ DRPLRP KGFYHE QI + VLSYD ++
Sbjct: 65 EKYSAAGKFLGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD LA+ + A+ LS++P + +RVG V +F+ NPTT++ME S L+L+ +G+
Sbjct: 125 DPDTLAMLGSSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIYSGTPG 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
+MIEG CD LSEE L +A++ V ++ L GK K ++
Sbjct: 185 KTIMIEGDCDELSEERLFEALKYADSKVEVMAKAQLELQATFGKAKKDYATDKIEEDVKA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V ++ + + ++ R AL + + T+ + L+
Sbjct: 245 AVATAISGKIDEACLVIDRTERGAALDA----------------------VYATVEEALK 282
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ ++E GE+ E H+ + + +L+ +E G+R
Sbjct: 283 AQFDEER---HGELKEAYSHLIEMNIR-----------RLIIEE-------------GKR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
+DGR A+ +RP+S+ L+PR HGSALF RGETQ+L +TLGD + AQ + + + K
Sbjct: 316 ADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRYD-K 374
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
FYL Y+FP SVGE GRI REIGHG LAERAL ++P+ D+PYT+RV S + S
Sbjct: 375 TFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMPA--DYPYTVRVISEVMGS 432
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+SMAS+CGG LAL DAGVP+K ++AG+++G+V + D++ ++++DI GSED
Sbjct: 433 NGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKY------VMITDILGSEDHY 486
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG DGITAFQ+D+K+ G++L +M +A+ + K R IL M C +
Sbjct: 487 GDMDFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGCLSSAQEEI 546
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S HAP +H MK+ PEKI +IG GGK +K+I EETG E I+ EDDGTVK+ D ++L+
Sbjct: 547 SDHAPQVHAMKINPEKIGALIGPGGKHIKAICEETGAE-INVEDDGTVKVFTADKTALKA 605
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ + + P G IYR + S+ +G FVEIA G +GL HISEL+ + K DVV
Sbjct: 606 AIEQVESYCFEPEAGKIYRGV-VVSVKEFGAFVEIAGGHQGLLHISELADYRVEKVTDVV 664
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
GD V VK++E++D+G++RLSR+A L E
Sbjct: 665 NEGDKVSVKILEIDDRGRMRLSRKAALEE 693
>gi|354599173|ref|ZP_09017190.1| Polyribonucleotide nucleotidyltransferase [Brenneria sp. EniD312]
gi|353677108|gb|EHD23141.1| Polyribonucleotide nucleotidyltransferase [Brenneria sp. EniD312]
Length = 706
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 317/759 (41%), Positives = 443/759 (58%), Gaps = 70/759 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 2 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSIDDTAVFVTVVGAKQAKPGQGFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 122 QVSPDIVAMIGASAALSLSGIPFGGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E D LSEE ++ AV G + + + + ALV GKPK + PE
Sbjct: 182 EGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW----EWHAPEV 237
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + VE ++ L +I K R + +++ V L
Sbjct: 238 NASLQQRVEALSEARLGDAYRITEKQERYAQVDAIKADVAAAL----------------- 280
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
L EDE D GE+ + + V +R R+
Sbjct: 281 ---LAEDETLDA-----GEIQD------------------------ILGSVEKNVVRSRV 308
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 309 LRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL- 367
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 368 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 427
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + F ++LSDI
Sbjct: 428 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGGNF------VVLSDIL 481
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 482 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 541
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 542 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 600
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG IY+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 601 GEKAKHAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 659
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
K D +++G V VK++EV+ +G++RLS + EA+A+
Sbjct: 660 KVTDYLQMGQEVPVKVLEVDRQGRVRLS----IKEANAQ 694
>gi|381190722|ref|ZP_09898239.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
gi|380451431|gb|EIA39038.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
Length = 713
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 328/774 (42%), Positives = 453/774 (58%), Gaps = 75/774 (9%)
Query: 81 DALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD 140
+ P+ PQ ++ R +++ETG +QASG+V V +T++ + ++ P E +D
Sbjct: 2 EGTPNVPQAHRYELTLAGRPLVLETGKYAKQASGSVLVRYADTVVLATAQASETPVE-AD 60
Query: 141 FFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILS 200
F PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE QI+
Sbjct: 61 FLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQIIV 120
Query: 201 WVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQL 260
VLS D + PD L AA A+ LS++P IA VRVGL+G F++NPT QE+E+SQL
Sbjct: 121 TVLSADQKNPPDILGPIAASAALMLSDIPWEGPIAAVRVGLIGGSFVLNPTLQELEESQL 180
Query: 261 DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI 320
DL++AGS +AILM+E + EE L+QA++ ++ I +A+ KPKM T
Sbjct: 181 DLVVAGSKEAILMVEAEAGEVDEETLVQALEFAHKEMQPILELQEAMARELAKPKMAWT- 239
Query: 321 KLPPPE---------LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGY 371
PPE LY+ E L +VLQ +K R +ALS E++
Sbjct: 240 ---PPESLPEEEKEALYRLALERG---LSQVLQTASKGERSRALSEFAERL--------- 284
Query: 372 VSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVF 431
I E +P DG DEG P+ S F
Sbjct: 285 --------IAEALPK-----------GEDGTPDEG----------KKPLYES------AF 309
Query: 432 KEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG 491
EV + LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 310 DEVVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLG 369
Query: 492 DKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLP 551
+ Q +D+L DE ++F + Y+FPP S GEV R+ SRRE+GHG LA+RAL+ V+P
Sbjct: 370 TGRDEQILDDL-GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMP 428
Query: 552 SDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFG 611
+ DFPYTIRV + ESNGSSSMA+VC GCLAL DAGVPI+ +AGVAMG+V +
Sbjct: 429 KEEDFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWE----- 483
Query: 612 GDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGR 671
+ +IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R
Sbjct: 484 -ENRAVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALLQAREAR 542
Query: 672 RHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDT 731
IL M P P L AP I +KV EKI L+IG GGK V++ +EE GVE +D
Sbjct: 543 LKILDLMETVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRA-LEELGVE-VDI 600
Query: 732 EDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGL 791
E+DGTV+I + DL + ++K I +LT VG+IY + I P+G F + PG EGL
Sbjct: 601 EEDGTVRIYSSDLQAALEAKKRIEDLTREAKVGEIYEGT-VTRITPFGAFXSLFPGTEGL 659
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ + + ED +KVGD++ VK+ ++++G++ L R PE + + PP
Sbjct: 660 LHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIR----PELEGKIPP 709
>gi|384135122|ref|YP_005517836.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289207|gb|AEJ43317.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 735
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 308/738 (41%), Positives = 439/738 (59%), Gaps = 60/738 (8%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R+ ++ETG + RQA+ AV V GET++ +V + P E DFFPL VNY+ER A G+
Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERLYAVGKI 70
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR +H +L RLIDRP+RP +GF ++ QI+ VLS D P+ A+
Sbjct: 71 PGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEIAAMIG 130
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
++ +S++P + I GV VGLV +F++NPT ++ E S L L++AG+ DAI+M+E
Sbjct: 131 TSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIVMVEAGA 190
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + EE++++A+ G ++ I +E+ A G K + PEL V A E+
Sbjct: 191 NQVPEEIVLEAILYGHQVIQTICDEINAFAAKVGVKKREVELHKVDPELEAAVRAYATEK 250
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ ++ +K+ R +AL++L +VL E T P+
Sbjct: 251 VSVAVRNPDKLAREEALANLNAEVLEHFKE--------------TFPE------------ 284
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
E D+ V + + +R I+ G R DGR D I
Sbjct: 285 ------------------------KEADIAEVMHTILKERVREAILREGIRPDGRRLDEI 320
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPIS GLLPR HGSALFTRG+TQ+L+V TLG Q +D LE + R+ Y+FP
Sbjct: 321 RPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLEIEKS-NRYMHHYNFP 379
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + APSRR+IGHG L ERAL+PV+PS +FPY IRV S I ESNGS+S AS+
Sbjct: 380 PFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRVVSEILESNGSTSQASI 439
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG +AL DAGVPIK +AG+AMG+V + D+ ILSDI G ED GDMDFKVAG
Sbjct: 440 CGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVA------ILSDIQGIEDHLGDMDFKVAG 493
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E G+TA QMDIK+ GI ++++AL+QA++GR +IL++M++ P LSK AP +
Sbjct: 494 TERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRADLSKFAPRVIT 553
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+K+ P+KI +IG GG+ + IIEETGV+ ID E DG V I + D +++ ++ N+
Sbjct: 554 VKIHPDKIRDVIGPGGRVINKIIEETGVK-IDIEQDGRVYIHSTDAEQANRAREMVENIV 612
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
+G Y ++ + YG FVEI PG+EGL HIS+L N +AK EDV +VGD + VK
Sbjct: 613 RDVEIGATY-TGKVTRVEKYGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQVGDTLTVK 671
Query: 819 LIEVNDKGQLRLSRRALL 836
+ E++++G++ LSR+ +L
Sbjct: 672 VTEIDNQGRINLSRKEVL 689
>gi|269120588|ref|YP_003308765.1| polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
ATCC 33386]
gi|268614466|gb|ACZ08834.1| Polyribonucleotide nucleotidyltransferase [Sebaldella termitidis
ATCC 33386]
Length = 710
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/745 (40%), Positives = 447/745 (60%), Gaps = 53/745 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S ++ G++ + + +G + RQASGAV V G+T++ + + E +DFFPL V+Y E
Sbjct: 6 SYELKIGEKTVKISSGKIARQASGAVIVECGKTVLLVTATRSKEVREGTDFFPLTVDYIE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+F A+G+ GGF KRE R EVL+ RLIDRP+RP +GF++ I+ V+S+D ++
Sbjct: 66 KFYASGKFPGGFIKRESRPSTDEVLIARLIDRPIRPLFPEGFFYGVHIVITVISFDEVNL 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ LA A+++S++P + + GV VG + KF++NPT +E+E S ++L +AG+ DA
Sbjct: 126 PENLATLGVSAALSISDIPFAGPVGGVNVGYIDGKFVLNPTPEELEISDIELSVAGTADA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+ M+E + + E+++++A+ G ++E+ E + + KM + PE+
Sbjct: 186 VTMVEAGANEIPEDIMLEAIMFGHGKIKEMCEEQEKFISQFEVNKMEFEVAEVNPEVKSF 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
++E A EEL ++ K R A+ +L +++L
Sbjct: 246 IDEKATEELGAAIEKHGKHERDDAIDALFDRLL--------------------------- 278
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
EE E +E I + K + ++ K +R I+ R
Sbjct: 279 ----EEFSASYENNEIPADIAK-------------EFKNYYHDLMKKMVRESILYKKNRP 321
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + IRPI LP HGSALFTRGETQ+L +TLG + Q +D +E + K+
Sbjct: 322 DGRKTEEIRPIDVEIDTLPIPHGSALFTRGETQALVTVTLGSRVNEQIVDGMEEESR-KK 380
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
FYL Y+FPP SVGE G + AP RRE+GHG+LAERAL+ ++P DFPYTIRV S ITESN
Sbjct: 381 FYLHYNFPPYSVGEAGFMRAPGRRELGHGSLAERALKYMIPEQEDFPYTIRVVSEITESN 440
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSS AS+CGG LAL AGVP+K S+AG+AMG++ + +EF ++L+DI G ED G
Sbjct: 441 GSSSQASICGGSLALMAAGVPMKSSVAGIAMGLIKENEEF------VVLTDIQGLEDHLG 494
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG ++GITA QMDIK+ GIT +M+ AL+QA +GR IL +M P P +S
Sbjct: 495 DMDFKVAGTKNGITALQMDIKITGITREIMEIALKQAHNGRMFILDKMNAVIPEPRKDVS 554
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
++AP IH MK+ P KI ++IG GGK +KSII++TG ID EDDG+V I K+ SSL+K+
Sbjct: 555 ENAPKIHFMKIDPSKIAILIGPGGKTIKSIIDQTGA-TIDIEDDGSVAIFVKEKSSLDKT 613
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
++ + T + +Y +K IA +G FVE+ PG+EGL HISE+ + K EDV+K
Sbjct: 614 IELVKSYTQSVELNAVYTGRVVK-IAKFGAFVEVLPGKEGLLHISEIKKERVNKVEDVLK 672
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
G ++ VK+I + D+ + LS +AL
Sbjct: 673 EGQIIKVKVIGMEDENKFNLSMKAL 697
>gi|430750263|ref|YP_007213171.1| polyribonucleotide nucleotidyltransferase [Thermobacillus composti
KWC4]
gi|430734228|gb|AGA58173.1| polyribonucleotide nucleotidyltransferase [Thermobacillus composti
KWC4]
Length = 699
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 307/747 (41%), Positives = 451/747 (60%), Gaps = 61/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R +++ETG + +QA+ AVTV G+T++ +C A EP D FFPL VN++
Sbjct: 5 VEMQLGGRPLVLETGRLAKQANAAVTVRYGDTVV---LCTATASKEPKDLGFFPLTVNFE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER + G+ GGF KREGR + +L RL DRP+RP +GF +E QI+ V+S D
Sbjct: 62 ERLYSVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNEVQIVDLVMSVDQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S++P + I GV VG V +F++NPT ++ E S + +++AG+ D
Sbjct: 122 SPEISAMIGTSAALSISDIPFNGPIGGVIVGRVDGEFVINPTVEQEERSDIYVVVAGTRD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E D + EE++++A+ G + +++I + ++ LV + GKPKM + E+ +
Sbjct: 182 AIMMVEAEADEVPEEVILEAIMFGHEEIKKIVDMIEELVSVAGKPKMEVQLHAVDEEVNR 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E A L++ +++ K R+ A+ ++ +
Sbjct: 242 AVREFASARLIEAIRVPEKQARQDAIDAVNADAIAYF----------------------- 278
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
EEV + TP + DVK V ++ + +RR I R
Sbjct: 279 -----EEVYAE-----------------TPEKMA--DVKEVLHDIVKEEVRRLITHEKIR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + IRPI GLLPR HGS LFTRG+TQ+L++ TLG Q +D ++ + E K
Sbjct: 315 PDGRALNEIRPIECEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLE-ESK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + AP RREIGHG L ERAL V+P +++FPYTIR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALAKVIPPESEFPYTIRLVSEVLES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AG+AMG++ D D+F ILSDI G ED
Sbjct: 434 NGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDQFS------ILSDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG G+TA QMDIK+ GI ++ +AL+QA++GR +IL +ML+ P L
Sbjct: 488 GDMDFKVAGTAKGVTAIQMDIKIDGIDREILSQALEQAREGRMYILGKMLEVIKEPRKQL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I IM++ P+KI +IG+GGK + IIE+TGV+ ID E DG V I + D ++ EK
Sbjct: 548 SPYAPKIIIMQINPDKIRDVIGAGGKIINKIIEDTGVK-IDIEQDGKVYIASADEAANEK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ II + VG+IY ++ I +G FVEI P +EGL HIS+LS+ +AK EDVV
Sbjct: 607 ARQIIEGIVKDVVVGEIYVGT-VRRIEKFGAFVEILPNKEGLVHISQLSTERVAKTEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD + VK+ E++ G++ LSR+A+L
Sbjct: 666 KIGDKITVKVTEIDQMGRINLSRKAVL 692
>gi|261751308|ref|ZP_05995017.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
gi|261741061|gb|EEY28987.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 5 str.
513]
Length = 714
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 323/755 (42%), Positives = 449/755 (59%), Gaps = 64/755 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + + + L E+ K
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAK------------------ 228
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE-- 389
++++ P + LS LE KVL ++ EN DL E
Sbjct: 229 ------------ELRDFQP--EDLSELEAKVLAVV-EN----------------DLREAY 257
Query: 390 --DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E + VD + H P+ + T M S +FK + +K +R I++ G
Sbjct: 258 KITEKQARYAAVDAAKAKAKEHFFPEGVEETEM--SAEQFATIFKHLQAKIVRWNILDTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L +
Sbjct: 316 NRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S IT
Sbjct: 376 -ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 489 HLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISSSRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +
Sbjct: 549 ELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNGKEI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK D
Sbjct: 608 EAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAKTTD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
VVK G V VKL+ +++G++RLS + + E E
Sbjct: 667 VVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|188991049|ref|YP_001903059.1| polynucleotide phosphorylase [Xanthomonas campestris pv. campestris
str. B100]
gi|167732809|emb|CAP51003.1| polyribonucleotide nucleotidyltransferase [Xanthomonas campestris
pv. campestris]
Length = 735
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 447/743 (60%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 41 YGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAG 100
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 101 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 160
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 161 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANAVLMVE 220
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE--LYKHVE 332
LSEE+++ AV G ++++ N + L VE KP T P L ++
Sbjct: 221 SEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKP---STWVAPAKNTALISALK 277
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E G +L Q+++K+ RR A+S++++ VL L+ G V+
Sbjct: 278 EAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLA--GRVA------------------- 316
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
EG +S ++ F E+ +R ++E R DG
Sbjct: 317 -----------SEG---------------WSSAELSKEFGELEYHTMRDSVLETKVRIDG 350
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + + + + F
Sbjct: 351 RALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK-ENFL 409
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGS
Sbjct: 410 FHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGS 469
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCG LAL DAGVP+K +AG+AMG+V + D F ++LSDI G ED GDM
Sbjct: 470 SSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRF------VVLSDILGDEDHLGDM 523
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM K P LS +
Sbjct: 524 DFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALTTPRQELSDY 583
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 584 APRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKS 642
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K G
Sbjct: 643 RIEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEG 701
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
DLV VK++EV+ +G++RLS +A+
Sbjct: 702 DLVRVKVLEVDKQGRIRLSIKAV 724
>gi|310817255|ref|YP_003965219.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
vulgare Y25]
gi|385234825|ref|YP_005796167.1| polyribonucleotide nucleotidyltransferase protein
[Ketogulonicigenium vulgare WSH-001]
gi|308755990|gb|ADO43919.1| polyribonucleotide nucleotidyltransferase [Ketogulonicigenium
vulgare Y25]
gi|343463736|gb|AEM42171.1| Polyribonucleotide nucleotidyltransferase protein
[Ketogulonicigenium vulgare WSH-001]
Length = 713
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 317/746 (42%), Positives = 436/746 (58%), Gaps = 67/746 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +GD + +ETG + RQA G+V T GET + +V A P DFFPL V+YQE++
Sbjct: 9 IQWGDETLTLETGKIARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L+ RLIDRP RP ++GF HE +++ VLS+D ++ PD
Sbjct: 69 AAGKIPGGFFKREARPTERETLISRLIDRPCRPLFVEGFKHEVLVMATVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S VP I RVG + +NP E+ D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIGAARVGYSNGAYTLNPAIDELHDIRNKSEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E LSE+ ++ AV + ++ + + + L E K + D L
Sbjct: 189 KDAVMMVESEAYELSEDEILGAVVFAHEQMQPVIDLIIDLAEDAAK-EPFDFQPADTSAL 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V + GE++ I+ K R A+ + K+ L+E D ++G V
Sbjct: 248 LAAVTALGGEDMRAAFAIRTKQDRVAAIDAAVAKIKAGLTEEQLA--DSSLGAV------ 299
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
K++ S LR IV+ G
Sbjct: 300 -------------------------------------------IKQLESDVLRSDIVKHG 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RR DGR D +RPI S GLLPRAHGSALFTRGETQ L V TLG Q ID L + +
Sbjct: 317 RRIDGRSLDEVRPIVSETGLLPRAHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFK 376
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP++ DFPYTIRV S IT
Sbjct: 377 -SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPANTDFPYTIRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL+ DG+ +L+DI G ED
Sbjct: 436 ESNGSSSMASVCGGSLSMLDAGVPLKAPVAGVAMGLVLEK-----DGSWAVLTDILGDED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E GIT+ QMDIKV GIT +M+KAL QA+ GR HIL EM K S +N
Sbjct: 491 HLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMRKALAQARTGRLHILGEMAK-SLTTAN 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDGT+KI + + ++
Sbjct: 550 AFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGTIKIASSNGEAI 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P + IY+ +K + +G FV R+GL H+S++ + L D
Sbjct: 609 KKAYDMIWSIVAEPEINGIYKGTVVK-LVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
V+K G V VKL+ +D+G++RLS +
Sbjct: 668 VLKEGQEVWVKLLGFDDRGKVRLSMK 693
>gi|257096716|sp|B0RRB8.2|PNP_XANCB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 704
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 447/743 (60%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE--LYKHVE 332
LSEE+++ AV G ++++ N + L VE KP T P L ++
Sbjct: 190 SEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKP---STWVAPAKNTALISALK 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E G +L Q+++K+ RR A+S++++ VL L+ G V+
Sbjct: 247 EAVGAQLAGAFQVRDKLQRRDAISAIKKDVLESLA--GRVA------------------- 285
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
EG +S ++ F E+ +R ++E R DG
Sbjct: 286 -----------SEG---------------WSSAELSKEFGELEYHTMRDSVLETKVRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + + + + F
Sbjct: 320 RALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAVAGEYK-ENFL 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGS
Sbjct: 379 FHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCG LAL DAGVP+K +AG+AMG+V + D F ++LSDI G ED GDM
Sbjct: 439 SSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRF------VVLSDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM K P LS +
Sbjct: 493 DFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSKALTTPRQELSDY 552
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 553 APRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKS 611
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K G
Sbjct: 612 RIEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEG 670
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
DLV VK++EV+ +G++RLS +A+
Sbjct: 671 DLVRVKVLEVDKQGRIRLSIKAV 693
>gi|258511422|ref|YP_003184856.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478148|gb|ACV58467.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 735
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 307/738 (41%), Positives = 440/738 (59%), Gaps = 60/738 (8%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R+ ++ETG + RQA+ AV V GET++ +V + P E DFFPL VNY+ER A G+
Sbjct: 12 RRFVLETGKLARQATAAVHVQYGETVVLATVTASKEPKE-LDFFPLTVNYEERLYAVGKI 70
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR +H +L RLIDRP+RP +GF ++ QI+ VLS D P+ A+
Sbjct: 71 PGGFIKREGRPSEHAILASRLIDRPIRPLFPEGFRNDVQIVDLVLSVDQDCAPEIAAMIG 130
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
++ +S++P + I GV VGLV +F++NPT ++ E S L L++AG+ DAI+M+E
Sbjct: 131 TSASLTISDIPFNGPIGGVIVGLVDGQFVINPTVEQSEKSDLHLVVAGTKDAIVMVEAGA 190
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + EE++++A+ G ++ I +E+ A + G K + PEL V A ++
Sbjct: 191 NQVPEEIVLEAILYGHQVIQTICDEINAFAQKVGVKKREVELHKVDPELEAAVRAYATDK 250
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ ++ +K+ R +AL++L +VL E T P+
Sbjct: 251 VSAAVRNPDKLAREEALANLNAEVLEHFKE--------------TFPE------------ 284
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
E D+ V + + +R I+ G R DGR D I
Sbjct: 285 ------------------------KEADIAEVMHTILKERVREAILREGIRPDGRRLDEI 320
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPIS GLLPR HGSALFTRG+TQ+L+V TLG Q +D LE + R+ Y+FP
Sbjct: 321 RPISCEVGLLPRTHGSALFTRGQTQALSVCTLGSMGDEQLLDGLELEKS-NRYMHHYNFP 379
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + APSRR+IGHG L ERAL+PV+PS +FPY IRV S I ESNGS+S AS+
Sbjct: 380 PFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRVVSEILESNGSTSQASI 439
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG +AL DAGVPIK +AG+AMG+V + D+ ILSDI G ED GDMDFKVAG
Sbjct: 440 CGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVA------ILSDIQGIEDHLGDMDFKVAG 493
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E G+TA QMDIK+ GI ++++AL+QA++GR +IL++M++ P LSK AP +
Sbjct: 494 TERGVTALQMDIKISGIDRSILERALKQAREGRMYILSKMMEAISEPRADLSKFAPRVIT 553
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+K+ P+KI +IG GG+ + IIEETGV+ ID E DG V I + D +++ ++ N+
Sbjct: 554 VKIHPDKIRDVIGPGGRVINKIIEETGVK-IDIEQDGRVYIHSTDAEQANRAREMVENIV 612
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG Y ++ + +G FVEI PG+EGL HIS+L N +AK EDV +VGD + VK
Sbjct: 613 RDVEVGATY-TGKVTRVEKFGAFVEILPGKEGLVHISQLDLNRVAKVEDVCQVGDTLTVK 671
Query: 819 LIEVNDKGQLRLSRRALL 836
+ E++++G++ LSR+ +L
Sbjct: 672 VTEIDNQGRINLSRKEVL 689
>gi|268316873|ref|YP_003290592.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
4252]
gi|345303219|ref|YP_004825121.1| polyribonucleotide nucleotidyltransferase [Rhodothermus marinus
SG0.5JP17-172]
gi|262334407|gb|ACY48204.1| Polyribonucleotide nucleotidyltransferase [Rhodothermus marinus DSM
4252]
gi|345112452|gb|AEN73284.1| polyribonucleotide nucleotidyltransferase [Rhodothermus marinus
SG0.5JP17-172]
Length = 772
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 326/780 (41%), Positives = 460/780 (58%), Gaps = 58/780 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
+ + +ETG + +QA+GAV V G+T++ + LAD P E FFPL V Y+E+F+A GR
Sbjct: 16 KSLRLETGRLAKQANGAVVVRQGDTMVLCTAVLADEPREGQSFFPLTVEYREKFAAGGRI 75
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR D E+L RLIDR +RP GF+HE QI+ +V+S D + D LA T
Sbjct: 76 PGGFIKREGRPTDKEILSSRLIDRAIRPLFPDGFFHEVQIICYVISADDRYDADVLAGTG 135
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A+ L+ P IA VRVG V +F+VNPT +E+E S ++L++AG +DAI+M+EG
Sbjct: 136 ASAALLLAGAPFDGPIAEVRVGRVDGQFVVNPTLKELEQSDINLVVAGKEDAIVMVEGEM 195
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKML--DTIKLPPPELYKHVEEIAG 336
+SEE +++A++V +A+R++ V G+P+ T LP
Sbjct: 196 KEVSEEDMLEALEVAHEAIRKLCRGQLEFVAAHGRPEPFPYQTTTLP------------- 242
Query: 337 EELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEE 396
EELV + R A+ LE + + + E +G ET+ LL D +
Sbjct: 243 EELVARV-------RELAVPKLEAHLRAPYDKQTFYEGLEQIG-EETVAALLGTTDAEGN 294
Query: 397 VVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFAD 456
V+ ++TP ++ ++ +VT + +R+ I+ GRR DGR D
Sbjct: 295 QVLA---------------EATPEGWTADQIRKAVSQVTREVMRQMILREGRRIDGRSLD 339
Query: 457 GIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYS 516
IRPI G LPR HGSA+FTRGETQ LA +TLG + Q ID + + KRF+L Y
Sbjct: 340 EIRPIWMEVGYLPRVHGSAIFTRGETQVLASVTLGTSKDVQMIDQIFVQGD-KRFFLHYE 398
Query: 517 FPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMA 576
FPP GE+ + P RREIGHG LAERAL +LP ++ FPYTIRV + + ESNGSSSMA
Sbjct: 399 FPPFCTGEIRFLRGPGRREIGHGYLAERALAAMLPDESSFPYTIRVNADVLESNGSSSMA 458
Query: 577 SVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKV 636
SVC G LAL DAGVP+K +AGVAMG++ + D+ IL+DI G+ED GDMDFKV
Sbjct: 459 SVCAGSLALMDAGVPVKKHVAGVAMGLIKEGDQVA------ILTDILGTEDHLGDMDFKV 512
Query: 637 AGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLI 696
AG DGITA QMDIK+GG+T +M++AL+QA+ R +IL M + P LS +AP +
Sbjct: 513 AGTRDGITACQMDIKIGGLTREIMQRALEQARRARMYILDLMEQTIEAPRPELSPYAPRL 572
Query: 697 HIMKVKPEKINLIIGSGGKKVKSIIEETG--VEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ + PE I +IG GG+ V+ I ET +E + + G V + A + + +++ +I
Sbjct: 573 TQITIDPEFIGAVIGPGGRVVQGIQRETNTTIEIEERDGVGVVTVAATNQENAQRAIEMI 632
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
+ VP VG Y ++SI +G VEI PG+EGL HISEL ++ D +KVGD
Sbjct: 633 KQIVAVPEVGAEYEGI-VRSIQSFGAIVEIMPGKEGLLHISELDHGYVRDIHDYLKVGDK 691
Query: 815 VDVKLIEVNDKGQLRLSRRALL--PEADAENPPVKLPTGDPTKDAAASDKLVGSPKPKGS 872
V VKLIE+ + G+LRLSR+A L PE +A+N G+P ++ A++++ G P+ S
Sbjct: 692 VRVKLIEIREDGKLRLSRKAFLPPPEPEAKN-------GEPAREQASAER-SGPPRDHAS 743
>gi|239907801|ref|YP_002954542.1| polynucleotide phosphorylase/polyadenylase [Desulfovibrio
magneticus RS-1]
gi|239797667|dbj|BAH76656.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
RS-1]
Length = 751
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 321/752 (42%), Positives = 440/752 (58%), Gaps = 59/752 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ ++ GD+ + +ETG + QA GA+ + G T++ + C + +E FFPL V+Y
Sbjct: 7 PIRLEAAIGDKTVTIETGRLANQADGAIWIQSGGTVVLVTACTQAL-AEEKGFFPLVVDY 65
Query: 149 QERFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
QE AAGR G +F+RE GR + EVLVCRLIDRP RP KGF E QI++ VLS DG
Sbjct: 66 QEMAYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADG 125
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME-DSQLDLLLAG 266
PD LA+T A A+ LS++P IAG RVG + +F++NPT ++ + L+L+ A
Sbjct: 126 EVEPDVLALTGASAALHLSKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGADLNLVFAA 185
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
S DA++M+EG F+SEE+L A++ G A+ + + + L E GKPK+ T P E
Sbjct: 186 SRDAVVMVEGAGRFVSEELLADALEFGHKAILPLLDLQEQLREKAGKPKIAFTPPAPIVE 245
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V A L + I+ K+ RR+A ++++ V+ +V P+
Sbjct: 246 LEALVAATAEAGLKQAFTIQEKMARREARKAVKQAVIE--------------AVVAAYPE 291
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
TP+ ++ + + + K LR+ I +
Sbjct: 292 -------------------------------TPLY--KMKAGEILESMEKKLLRKLIKDT 318
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR +RPI G+LPR HGSALF RGET++L V TLG Q+I+ L + +
Sbjct: 319 GIRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVATLGSTGDEQKIETL-NGE 377
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
KRF L Y+FPP VGEV + PSRREIGHG LAER++ PVLP +FP+T+R+ S +
Sbjct: 378 TYKRFMLHYNFPPYCVGEVKMLRGPSRREIGHGALAERSILPVLPGPEEFPFTMRIVSQV 437
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
ESNGSSSMASV G LAL DAGVPIK +AG+AMG++ + D+F L+L+DI G E
Sbjct: 438 MESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDDDF------LVLTDILGDE 491
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DA GDMDFKVAG DG+T QMDIK+ GI VM++AL QAKD R HIL M P P
Sbjct: 492 DAMGDMDFKVAGTADGVTGIQMDIKITGIPQAVMRQALNQAKDARLHILGRMAAVLPEPR 551
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS AP + ++ + PEKI +IG GGK +K++ ETG +ID ED G + I A L S
Sbjct: 552 PELSALAPQLAVVHINPEKIREVIGPGGKNIKAMTAETGA-SIDIEDTGKISIFAPTLES 610
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEK+KA + VG Y+ IK I G VEI PG EGL H+S+L +A
Sbjct: 611 LEKAKARVLYYDQHADVGANYKGRVIK-IIDCGAIVEILPGLEGLVHVSQLDVERVASPA 669
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
DVVK+G ++VK+++V G++RLSR+A+L E
Sbjct: 670 DVVKMGQEIEVKVLDVEPTGRVRLSRKAVLNE 701
>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
Length = 716
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 315/752 (41%), Positives = 447/752 (59%), Gaps = 62/752 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA+GAV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGKHTVTLETGEIARQAAGAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG ++++NP+ E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYANGQYLLNPSKTELATSQLDLVVAGTKQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
+ L E++++ AV G + ++ + N + L + P++ D K P EL V E
Sbjct: 191 SEANILPEDVMLGAVVFGHEQMQAVINAINELADEV-NPEVWDW-KAPETNTELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAG + + +I+ K R L DE VE
Sbjct: 249 IAGATIAEAFKIRQKQARSAKL-------------------DEAWAAVEA---------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+++ E D ++ ++K +FK++ + +R +I+ G R DGR
Sbjct: 280 ---ALINEETD----------------TLAKNEIKGIFKQLEADVVRGQILAGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPDPEDFNYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL++M P LS+HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQAAVAGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ M++ P+KI +IG GG+ ++SI ET E I+ DDG V I A + E +KA
Sbjct: 553 PRLYTMRINPDKIREVIGKGGETIRSITAETHTE-INISDDGVVTIAATTAEAGEAAKAR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEMITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVKDVNDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
+V+VK ++V+++G++RLS RALLP+ + P
Sbjct: 672 QVVNVKALDVDERGRVRLSIRALLPQPERSAP 703
>gi|315648088|ref|ZP_07901189.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
V453]
gi|315276734|gb|EFU40077.1| polyribonucleotide nucleotidyltransferase [Paenibacillus vortex
V453]
Length = 701
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/747 (41%), Positives = 447/747 (59%), Gaps = 61/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R ++ ETG + +QA+ AV V GET + +C SEP D FFPL VNY+
Sbjct: 5 VEMQLGGRPLVFETGRLAKQANAAVMVRYGETAV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER A G+ GGF KREGR + +L RL DRP+RP +GF ++ Q+L+ V+S D
Sbjct: 62 ERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S+VP + I GV VG V F+VNP + E S + L+++G+ D
Sbjct: 122 EPEIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGNFVVNPDIAQQEASDIYLVVSGTKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E + + EE++++A+ G + +++I +++ LV CGK KM + + +
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAKIEELVAACGKEKMAVKLHAVNEAVNR 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V + A LV+ ++I+ K R+ A+ ++ E+ T+ E +ET P+LL+
Sbjct: 242 EVRDFAAARLVEAVRIEEKHARQDAIDAINEEAYTVFEEK----------YIET-PELLK 290
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D VK V ++ + +RR I R
Sbjct: 291 D------------------------------------VKEVLHDIVKEEVRRLITHDKVR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR IRPI LLPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E K
Sbjct: 315 PDGRGLSEIRPIDCDTSLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + AP RREIGHG L ERAL V+P++ +FPYTIR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPNEVEFPYTIRLVSEVIES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AGVAMG++ D D IL+DI G ED
Sbjct: 434 NGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------ILTDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +G+TA QMDIK+ GI ++++ALQQAK+GR HIL +M + P SL
Sbjct: 488 GDMDFKVAGTPEGVTAIQMDIKIDGIDRAILQEALQQAKEGRMHILGKMAEAIQQPRTSL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S++AP I M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + +K
Sbjct: 548 SQYAPKIITMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASANDEMNKK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ +II + VG+IY +K I +G FVEI P ++GL HIS+LS+ +AK EDVV
Sbjct: 607 ALSIIEGIVREVAVGEIYTGT-VKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
+GD++ VK+ E++ +G++ LSR+A+L
Sbjct: 666 AIGDVITVKVTEIDQQGRINLSRKAVL 692
>gi|17988244|ref|NP_540878.1| polynucleotide phosphorylase [Brucella melitensis bv. 1 str. 16M]
gi|225853594|ref|YP_002733827.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
ATCC 23457]
gi|256264963|ref|ZP_05467495.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|260563068|ref|ZP_05833554.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|265992189|ref|ZP_06104746.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|265993928|ref|ZP_06106485.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|384212520|ref|YP_005601604.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
gi|384409620|ref|YP_005598241.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|384446152|ref|YP_005604871.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis NI]
gi|81851039|sp|Q8YEB7.1|PNP_BRUME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782709|sp|C0RG51.1|PNP_BRUMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17984011|gb|AAL53142.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|225641959|gb|ACO01873.1| Polyribonucleotide nucleotidyltransferase [Brucella melitensis ATCC
23457]
gi|260153084|gb|EEW88176.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. 16M]
gi|262764909|gb|EEZ10830.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
3 str. Ether]
gi|263003255|gb|EEZ15548.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis bv.
1 str. Rev.1]
gi|263095446|gb|EEZ19047.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis bv.
2 str. 63/9]
gi|326410167|gb|ADZ67232.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
M28]
gi|326539885|gb|ADZ88100.1| polyribonucleotide nucleotidyltransferase [Brucella melitensis
M5-90]
gi|349744141|gb|AEQ09684.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis NI]
Length = 714
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 325/756 (42%), Positives = 448/756 (59%), Gaps = 66/756 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G + + + + + L E+ K P+ PE
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPVIDAIIKLAEVAAKEPRDFQ------PE---- 236
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE- 389
LS LE KVL ++ EN DL E
Sbjct: 237 -----------------------DLSELEAKVLAVV-EN----------------DLREA 256
Query: 390 ---DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
E + VD + + H P+ + T M S +FK + +K +R I++
Sbjct: 257 YKITEKQARYAAVDAAKAKAEEHFFPEGVEETEM--SAEQFATIFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 315 GNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S I
Sbjct: 375 K-ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISSSR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 548 AELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNGKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 607 IEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 666 DVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
Length = 713
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 329/773 (42%), Positives = 456/773 (58%), Gaps = 69/773 (8%)
Query: 79 LSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP 138
+ +A P+ P + R +++ETG +QASG+V V G+T++ + +D P E
Sbjct: 1 MPEATPNTPPSCRYETEIAGRTLILETGKYAKQASGSVLVRYGDTVVLATAQASDEPVE- 59
Query: 139 SDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQI 198
+DF PL V ++ER A G+ G F +REGR + +L R+ DRP+RP KGF HE Q+
Sbjct: 60 ADFLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQV 119
Query: 199 LSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDS 258
+ VLS D + PD L AA A+ LS++P +A VRVGL+G + ++NPT QE+E+S
Sbjct: 120 IVTVLSADQKNPPDILGPIAASAALMLSDIPWEGPVASVRVGLLGGQLVLNPTLQELEES 179
Query: 259 QLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLD 318
LDL++AGS DAILM+E + EE L+QA++ ++ I + + + GKPKM
Sbjct: 180 ALDLVVAGSRDAILMVEAGAQEVDEETLVQALEFAHREMQPILDLQERMARELGKPKMAW 239
Query: 319 TIKLPPPELYKHVEE-----IAGEE-LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYV 372
T PPE E+ +A E+ L +VLQ +K R +ALS+ E +
Sbjct: 240 T----PPETLPEEEKEALYRLALEKGLSQVLQTASKGERSRALSAFAESL---------- 285
Query: 373 SKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFK 432
I+E +P L DG DEG P+ S F
Sbjct: 286 -------ILEALPRL-----------EDGAPDEG----------KRPLYES------AFD 311
Query: 433 EVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGD 492
E+ + LRR ++E G+R+DGR +RPI +LPRAHGSA+FTRGETQ L +TLG
Sbjct: 312 EIVRRELRRLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGT 371
Query: 493 KQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPS 552
+ Q ID+L DE F + Y+FPP S GEV R+ SRRE+GHG LA+RAL VLPS
Sbjct: 372 GRDEQIIDDL-GIDETDPFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALRAVLPS 430
Query: 553 DNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGG 612
FPYTIRV + ESNGSSSMA+VC G LAL DAGVP+K +AGVAMG+V + ++
Sbjct: 431 QEAFPYTIRVVGDVLESNGSSSMATVCAGSLALMDAGVPVKAPVAGVAMGLVWENEK--- 487
Query: 613 DGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRR 672
+IL+DI G EDA GDMDFKVAG G+TA QMD KVGG+ V+K+AL QA++ R
Sbjct: 488 ---AVILTDILGLEDALGDMDFKVAGTRQGVTALQMDNKVGGLPREVLKEALLQAREARL 544
Query: 673 HILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTE 732
IL M P P SL AP I +KV +KI ++IG GGK V++ +EE GVE +D E
Sbjct: 545 KILDLMEMVLPAPRPSLKPFAPRILSLKVPVDKIGIVIGPGGKNVRA-LEELGVE-VDIE 602
Query: 733 DDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLC 792
+DGT++I + D+ EK+KA I LT VG+IY + I P+G F+ + PG EGL
Sbjct: 603 EDGTIRIYSSDMEKAEKAKARIEELTREAKVGEIYEGT-VTRITPFGAFISLFPGTEGLL 661
Query: 793 HISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
HIS+++ + + ED +KVGD++ VK+ +++KG++ L R PE + + PP
Sbjct: 662 HISQIAPGRVKRVEDHLKVGDVIKVKVHRIDEKGKIDLIR----PELEGKIPP 710
>gi|253686990|ref|YP_003016180.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259534139|sp|C6DKK7.1|PNP_PECCP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|251753568|gb|ACT11644.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 706
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/762 (41%), Positives = 445/762 (58%), Gaps = 67/762 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P S I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E D LSE+ ++ AV G D + + + ALV GKPK PE
Sbjct: 183 EGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKW----DWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R + ++ V E +++DET+
Sbjct: 239 NVSLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADV-----EAALLAEDETLNA--- 290
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
GE+ E + V +R R+
Sbjct: 291 -----------------GEIQE------------------------ILGNVEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P ++FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
K D +++G V VK++EV+ +G++RLS + A P +A P
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPTQEAAAP 702
>gi|188586076|ref|YP_001917621.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|226702667|sp|B2A3A3.1|PNP_NATTJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|179350763|gb|ACB85033.1| Polyribonucleotide nucleotidyltransferase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 718
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 313/755 (41%), Positives = 443/755 (58%), Gaps = 49/755 (6%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P +V Q+ +ETG + +QA+GAV V G T++ + + P + +FFPL V+Y
Sbjct: 2 PTTVSEEIAGYQLTLETGELAKQANGAVKVQYGNTVVLVTATASKEPKDDLNFFPLTVDY 61
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
+ER A G+ GGF KREG+ + L RL DRP+RP GF + I+S VLS D
Sbjct: 62 EERLYAVGKIPGGFIKREGKPTEKATLTARLTDRPIRPLFPDGFRNPVHIVSTVLSVDQN 121
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
P+ ++ A A+++S++P IA V+VG V D+ +V P E E+SQLDL++AG+
Sbjct: 122 CPPEIASIIGASAALSISDIPFDGPIASVKVGKVNDEIVVTPDVDEHEESQLDLVVAGTK 181
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DAI+M+E + L E+ +++A+ + +++I + LVE G+ KM + LP EL
Sbjct: 182 DAIMMVEAEANELPEDEMLEAIMKAHEEIKKIITMQEQLVEQVGQKKMEVELDLPSDELV 241
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
VEE+A E++ KVLQIK+K+ R A+ ++KV+ L E Y S++ E
Sbjct: 242 SEVEELALEDIEKVLQIKDKLEREDAMDEAKQKVVDHLLEK-YNSEENEDEEEELKEK-- 298
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
HIK F + + +R RI+
Sbjct: 299 --------------------HIKS-----------------AFDSILKREMRSRIIHENS 321
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR IRP++ LLP HGS LFTRG+TQ L V TLG Q +D L+ +E
Sbjct: 322 RPDGRGQKEIRPVTCDVDLLPNTHGSGLFTRGQTQVLNVCTLGALGDVQILDGLDI-EES 380
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KR+ Y+FPP SVGE G + P RREIGHG LAERAL+P++P++ DFPYTIR+ S + E
Sbjct: 381 KRYMHHYNFPPYSVGEAGFMKGPGRREIGHGALAERALKPMIPTEKDFPYTIRLVSEVLE 440
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGS+SM SVC L+L DAGVPI+ +++G+AMG++ + D+ ILSDI G ED
Sbjct: 441 SNGSTSMGSVCASSLSLMDAGVPIEKAVSGIAMGLIKEGDQLA------ILSDIQGIEDF 494
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG EDGITA QMDIK+ G T ++K+AL+Q KDG HIL M + P
Sbjct: 495 LGDMDFKVAGTEDGITALQMDIKISGTTREILKQALKQGKDGYLHILNIMKQTISEPREE 554
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS AP + ++ P+KI +IG GGK + II+ETGV+ ID E DG + I++ D E
Sbjct: 555 LSPLAPRVIKKQIDPDKIRNVIGPGGKMINKIIDETGVK-IDIEPDGLIYISSSDAEQAE 613
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ I L P VG++Y +++ YG FVEI PG+EGL HISEL+ + + K EDV
Sbjct: 614 QAIKAIDELIKEPEVGEVYLGKVVRT-EKYGAFVEILPGKEGLVHISELAEDRVGKTEDV 672
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
KVGD + VK+I ++++G++ LSR+ L E D +
Sbjct: 673 AKVGDEILVKIINIDERGRINLSRKQALGEEDGKT 707
>gi|261324106|ref|ZP_05963303.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
gi|261300086|gb|EEY03583.1| polyribonucleotide nucleotidyltransferase [Brucella neotomae 5K33]
Length = 714
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 325/758 (42%), Positives = 450/758 (59%), Gaps = 70/758 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + +D I
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS LE KVL ++ EN DL
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSELEAKVLAVV-EN----------------DLR 254
Query: 389 E----DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
E E + VD + H P+ + T ML + +FK + +K +R I+
Sbjct: 255 EAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQF--ATIFKHLQAKIVRWNIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 313 DTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S
Sbjct: 373 TYK-ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIYPMLPAAEQFPYTIRAVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G
Sbjct: 432 EITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 486 DEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 546 SRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 605 KEIEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 664 TTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|148556711|ref|YP_001264293.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas wittichii
RW1]
gi|187611293|sp|A5VCY9.1|PNP_SPHWW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148501901|gb|ABQ70155.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas wittichii
RW1]
Length = 774
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 312/761 (40%), Positives = 446/761 (58%), Gaps = 65/761 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE+
Sbjct: 7 VEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+ ++GR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ VLSYDG + P
Sbjct: 67 YFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSYDGENEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ +S VP I RVG ++++NPT ++ LDL++A + DA+
Sbjct: 127 DILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVAATHDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL---Y 328
+M+E LSEE+++ AV A +++ +KA++++ K P +L
Sbjct: 187 MMVESEAKELSEEVMLGAVMFAHKASQDV---IKAIIKLAEKSAKDPWEMAPQADLSAAK 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
++++ G+++ ++ NK R AL+ K
Sbjct: 244 TKLKKLVGKDITAAYKLTNKSARSSALNEARAKA-------------------------- 277
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+E D P+ + + +KLV K++ ++ +R I++ GR
Sbjct: 278 ------KEAFADA---------TPQDQMAA--------IKLV-KKLEAEIVRTAILKDGR 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI + LPRAHGSALFTRGETQS++ TLG K+ Q ID L
Sbjct: 314 RIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDGLNGL-RY 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL VLP+ +FPYTIR+ S ITE
Sbjct: 373 EHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEEFPYTIRLTSDITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGG LA+ DAGVPIK ++G+AMG++L+ +F ++SDI G ED
Sbjct: 433 SNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFA------VISDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +GIT QMDIK+ GIT + K AL QAK+GR HIL EM K
Sbjct: 487 LGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKALDHTRTE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS HAP I M V +KI IIG+GGK ++ I+ TG + +D +DDGTVKI++ D + +E
Sbjct: 547 LSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAK-VDIDDDGTVKISSSDTAQIE 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ I + P VG IY ++ ++ +G FV G++GL H+SE+ + + K D
Sbjct: 606 AARNWIIGIVAEPEVGKIY-TGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVADA 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
+ G V VK++E++++G++RLS R + E E P + P
Sbjct: 665 LSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELPDTRPP 705
>gi|357026478|ref|ZP_09088578.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium amorphae
CCNWGS0123]
gi|355541593|gb|EHH10769.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium amorphae
CCNWGS0123]
Length = 715
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 315/748 (42%), Positives = 444/748 (59%), Gaps = 64/748 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET + +V P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLVLETGKIARQADGAVLATYGETKVLATVVSMKEPKPGLDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP G+ ++TQI+ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYKNDTQIVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP I G RVG + ++++NP EM++S+LDL++AG+ DA+
Sbjct: 127 DILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHVDEMQESKLDLVVAGTTDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + + L E+ K D P+ Y +
Sbjct: 187 LMVESEAKELGEDLMLGAVMFGHKGFQPVIDAIIKLAEVAAK----DPRDFTAPD-YSAL 241
Query: 332 E----EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
E +I EL +I +K R A+ +++ KV +
Sbjct: 242 EGEMLKIVENELRDAYKITDKQKRYAAVDAVKAKVKAAFTPA------------------ 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E ED + ++ + VFKE+ +K +R I++ G
Sbjct: 284 ---EGEDAK-------------------------YTSEQIGSVFKELQAKVVRWNILDTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +R I S G+LPR HGSALFTRGETQ+L V TLG + Q +D+L +
Sbjct: 316 SRIDGRDLKTVRKIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLTGMYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
++F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ + FPYT+RV S IT
Sbjct: 376 -EKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTADQFPYTLRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +GIT+ QMDIK+ GIT +M+ AL QAKDGR HIL EM
Sbjct: 489 HLGDMDFKVAGTANGITSLQMDIKIDGITEEIMQIALGQAKDGRLHILGEMAHALSGARA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +
Sbjct: 549 ELGEFAPRIEVMHIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E +K I + P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK D
Sbjct: 608 EAAKKWIHTIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLANDRVAKTSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
VVK GD V VKL+ +++G++RLS + +
Sbjct: 667 VVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|385870317|gb|AFI88837.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium sp.
SCC3193]
Length = 706
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/769 (40%), Positives = 449/769 (58%), Gaps = 70/769 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P S I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
A+LM+E + LSE+ ++ AV G D + + + +LV GKPK + PE
Sbjct: 183 QGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKW----EWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R ++ ++ V+ L ++DET+
Sbjct: 239 NVSLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAALQ-----AEDETLNA--- 290
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
GE+ E + + +R R+
Sbjct: 291 -----------------GEIQE------------------------ILGNIEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
K D +++G V VK++EV+ +G++RLS + EA+A+ P+ +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLS----IKEANAQTQEAAAPSSE 705
>gi|404252243|ref|ZP_10956211.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. PAMC
26621]
Length = 808
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 436/752 (57%), Gaps = 59/752 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVTTQWGGKTLTLETGRVARQADGAVMATLGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++SAAGR GGFFKRE + E L RLIDRP+RP +GFY+E ++ VLSYDG +
Sbjct: 66 KYSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ +S VP I RVG + ++I+NPT ++++ +LDL++A + DA
Sbjct: 126 PDMLAMVAASAALTISGVPFMGPIGAARVGYIDGEYILNPTVEQIKAGELDLVVAATGDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E LSEE+++ AVQ A RE+ N V L E K ++
Sbjct: 186 VMMVESEAKELSEEIMLGAVQFAHKACREVCNLVIDLAEQAAKDPWEMPVQSDLTAAKDK 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ G ++ ++ +K R L + K ++
Sbjct: 246 LRKLVGADIAAAYKVTDKSKRSTMLYEVRAKAREAFADAA-------------------- 285
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
P+ + + L +++ ++V R I++ G R
Sbjct: 286 ---------------------PQDQMAAGKLVKKLEGEIV---------RGAILKDGTRI 315
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPI + LPRAHGSALFTRGETQ++ TLG K Q ID L + +
Sbjct: 316 DGRTTTQIRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLSYEN 374
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS ++FPYTIRV S ITESN
Sbjct: 375 FMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKDEFPYTIRVLSDITESN 434
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F +LSDI G ED G
Sbjct: 435 GSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDFA------VLSDILGDEDHLG 488
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GIT QMDIK+ GIT +M+ AL QAK+GR HIL EM K LS
Sbjct: 489 DMDFKVAGTEAGITTMQMDIKIAGITDEIMRVALAQAKEGRAHILGEMNKALDSTRTELS 548
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP I +++ KI +IG+GGK ++ I+ +TG + +D +D+G +KI++ D + +E +
Sbjct: 549 AHAPRIETLQIDKAKIREVIGTGGKVIREIVAQTGAK-VDIDDEGLIKISSSDTAQIEAA 607
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I + VG +Y + ++ ++ +G FV G++GL H+SE+ + + K DV+
Sbjct: 608 IKWIKGIVEEAEVGKVY-DGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVSDVLS 666
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E AE
Sbjct: 667 EGQEVKVKVLEIDPRGKVRLSMRVVDQETGAE 698
>gi|194014349|ref|ZP_03052966.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
gi|194013375|gb|EDW22940.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus ATCC
7061]
Length = 705
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VETG + +QA+GAV V G+T + +S + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V KFI+NP +++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G ++ + + +V+ GK K+ + L V+
Sbjct: 189 VEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLADEVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+K +Q+ K R A+S++++ V+ + E+ED
Sbjct: 249 LAETDLLKAIQVHEKHAREDAISAVKKAVV----------------------EKFEEEDR 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE + + +V KLV EV RR I E R DGR
Sbjct: 287 DEATIKQAK---------------------DVLNKLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR IL ML P LS++A
Sbjct: 494 FKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTIPASRGELSRYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I MK+ P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ + +K+K I
Sbjct: 554 PKILTMKINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTEEDMNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G F+EI G++GL HISEL+ + + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFLEIFSGKDGLVHISELALDRVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 ELLVKVTEIDKQGRVNLSRKAVL 694
>gi|261820132|ref|YP_003258238.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium wasabiae
WPP163]
gi|261604145|gb|ACX86631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
WPP163]
Length = 706
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 314/769 (40%), Positives = 449/769 (58%), Gaps = 70/769 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P S I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTTDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
A+LM+E + LSE+ ++ AV G D + + + +LV GKPK + PE
Sbjct: 183 QGAVLMVESEAEVLSEDQMLGAVVFGHDQQQIVIENINSLVAEAGKPKW----EWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R ++ ++ V+ L ++DET+
Sbjct: 239 NISLEQRVQALSEARLGDAYRITEKQERYAQVNVIKADVVAALQ-----AEDETLNA--- 290
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
GE+ E + + +R R+
Sbjct: 291 -----------------GEIQE------------------------ILGNIEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQTIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
K D +++G V VK++EV+ +G++RLS + EA+A+ P+ +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLS----IKEANAQTQEAAAPSSE 705
>gi|337749997|ref|YP_004644159.1| hypothetical protein KNP414_05765 [Paenibacillus mucilaginosus
KNP414]
gi|379722848|ref|YP_005314979.1| hypothetical protein PM3016_5106 [Paenibacillus mucilaginosus 3016]
gi|386725625|ref|YP_006191951.1| hypothetical protein B2K_26440 [Paenibacillus mucilaginosus K02]
gi|336301186|gb|AEI44289.1| Pnp [Paenibacillus mucilaginosus KNP414]
gi|378571520|gb|AFC31830.1| Pnp [Paenibacillus mucilaginosus 3016]
gi|384092750|gb|AFH64186.1| hypothetical protein B2K_26440 [Paenibacillus mucilaginosus K02]
Length = 700
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 311/748 (41%), Positives = 443/748 (59%), Gaps = 61/748 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNY 148
V++ G R +++ETG + +QA+ AV G+T+I +C SEP D FFPL VNY
Sbjct: 4 QVQMDLGGRTLILETGRLAKQANAAVVAKYGDTVI---LCTVTASSEPKDLDFFPLTVNY 60
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
+ER + G+ GGF KREGR + +L RL DRP+RP +GF ++ QI + V+S D
Sbjct: 61 EERLYSVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIANIVMSVDQD 120
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
P+ A+ A+++S+VP + + GV VG V +F++NPT ++ + S + L++AG+
Sbjct: 121 CSPEIAAMIGTSAALSISDVPFNGPVGGVIVGRVDGQFVINPTLEQADKSDIHLVVAGTK 180
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DAI+M+E D + EE++++A+ G D +R+I + LV GKPKM + E+
Sbjct: 181 DAIMMVEAGADEVPEEVMLEAIMFGHDEIRKIVAVQEQLVAEAGKPKMEVKLHAVDAEVS 240
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E A L++ ++++ K R++A+ D +
Sbjct: 241 AAVREFAQARLIEAIKVQEKHARQEAI------------------------------DAV 270
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++ +V E E DVK ++ + +RR I
Sbjct: 271 NAEAKEHFALVYAETPE-----------------KMADVKETLYDIVKEEVRRLITHDKV 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IRPI LLPR HGS LFTRG+TQ+L++ TLG Q +D ++ + E
Sbjct: 314 RPDGRALDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLE-ES 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FPP SVGE + P RREIGHG L ERALEP++P++ DFPYTIR+ S + E
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALEPIIPNETDFPYTIRLVSEVLE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGS+S AS+C LAL DAGVPIK +AGVAMG++ D + F ILSDI G ED
Sbjct: 433 SNGSTSQASICASTLALMDAGVPIKAPVAGVAMGLIKDGEHFS------ILSDIQGMEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GI ++ ++L+QAK GR HIL +ML+ P S
Sbjct: 487 LGDMDFKVAGTAKGVTALQMDIKIDGIDRSILTQSLEQAKVGRMHILNKMLERIQEPKTS 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LSK+AP I M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + E
Sbjct: 547 LSKYAPKILTMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASSNQEMNE 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
K++ II + VG+IY +K I +G FVEI PG++GL HIS+LS+ +AK ED
Sbjct: 606 KARQIIEGIVREVIVGEIYLGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDA 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VK+GD + VK+ E++ +G++ LSR+A+L
Sbjct: 665 VKIGDQITVKVTEIDGQGRVNLSRKAVL 692
>gi|389872939|ref|YP_006380358.1| polynucleotide phosphorylase/polyadenylase [Advenella kashmirensis
WT001]
gi|388538188|gb|AFK63376.1| polynucleotide phosphorylase/polyadenylase [Advenella kashmirensis
WT001]
Length = 720
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 319/760 (41%), Positives = 448/760 (58%), Gaps = 56/760 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +GD+ +++ETG + RQ+SGAV V+ G++++ +V A DFFPL V+Y
Sbjct: 5 VTKSFQYGDQTVVLETGEIARQSSGAVVVSMGDSVVLATVVAAKNAKPGQDFFPLTVDYV 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ +AGR GGFFKREG+ + E L RLIDRPLRP +GFY+E Q++ VLS D
Sbjct: 65 EKTYSAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVIIHVLSVDPQI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ + A+A+S +P I RVG + ++++NPT ++ DS+++L++AG+++
Sbjct: 125 DPDIAALIGSSAALAVSGIPFDGPIGAARVGYINGQYLLNPTQDQLVDSEMNLVVAGTEN 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSEE+++ V G + ++ N + LV GKP+ D E
Sbjct: 185 AVLMVESEAKQLSEEVMLGGVVFGHEQMQAAINAIHDLVAEAGKPEW-DWQPEAKNEALI 243
Query: 330 HVEEIAGEELVK-VLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
A E +K +I+ K R L + V L+E + + PD +
Sbjct: 244 AAVTAAAESGLKSAYEIRQKQERTTKLREVTAAVKQTLAEQAAQAGQDA-------PDAV 296
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E+ ++F ++ SK +R +I+ G
Sbjct: 297 AIEN------------------------------------IIF-DLESKIVRGQILAGEP 319
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPIS R G+LPRAHGSALFTRGETQ+L + TLG KQ Q ID++ +
Sbjct: 320 RIDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVIATLGTKQDEQIIDSVMGEHR- 378
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+ PP + GE GR GAP RREIGHG LA+RAL LP+ DF YTIRV S ITE
Sbjct: 379 DRFMLHYNMPPFATGETGRFGAPKRREIGHGRLAKRALISTLPAHEDFQYTIRVVSEITE 438
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCGG LA+ DAGVP+K +AGVAMG++ D +F +L+DI G ED
Sbjct: 439 SNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKFA------VLTDILGDEDH 492
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG ++GITA QMDIK+ GIT +M+ AL QA+DGR HIL +M +
Sbjct: 493 LGDMDFKVAGTKNGITALQMDIKIQGITKEIMQVALAQARDGRMHILGKMTEALTGSREE 552
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS AP + MK+ PEKI +IG GG ++++ EETG ID D+G V I++ DL +
Sbjct: 553 LSTFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGCH-IDISDEGVVTISSADLDKAK 611
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+++ I+ LT V VG +Y ++ + +G V+I PGR+GL HISE+++ +A DV
Sbjct: 612 EAERRIAELTAVVEVGQVYEGT-VQRLLDFGGIVQILPGRDGLLHISEIANYRIANINDV 670
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLP-EADAENPPVK 847
+ VG V VK+IE +D+G+LRLS +AL E EN P +
Sbjct: 671 LTVGQKVKVKVIEADDRGRLRLSAKALGGLEGAQENAPAE 710
>gi|220916341|ref|YP_002491645.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|254782701|sp|B8JFZ1.1|PNP_ANAD2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219954195|gb|ACL64579.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 721
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 317/771 (41%), Positives = 451/771 (58%), Gaps = 56/771 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ G + IL+ETG + +QA G+V V G++I+ + A E DFFPL V+Y
Sbjct: 3 PIQKTATVGGKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QE+ AAGR G FF+REGR + E L RL+DR RP +G+ +ETQ+++ V+S+D
Sbjct: 63 QEKLFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ D LA+T A A+ +S++P IAGVRV VG + + NPT + ++ LD+++A S
Sbjct: 123 NDTDVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASR 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--- 325
DAI+M+EG +SE ++I+A+ GQ AV+ + + AL G PP
Sbjct: 183 DAIVMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARR---AFEPPKND 239
Query: 326 -ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
EL V+ + E++ + K R LS +++++L L KDE G
Sbjct: 240 VELRAKVKALTWEKVKEAYGRNEKHDRYGRLSEIKKELLQAL-------KDEAAG----- 287
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+ K + E ++K +++V ++R+ I
Sbjct: 288 ----------------------------DAAKLATIALREKEIKGYYEDVKYDYMRKMIT 319
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ RR GR IR I+ GLLPR HGS+LFTRGETQ+L TLG + QR++ L +
Sbjct: 320 DERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEML-T 378
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
K+F L Y+FPP SVGEV + +P RREIGHG LAERAL V+P ++ FPYT+RV S
Sbjct: 379 GMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFPYTVRVVS 438
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + ++ ILSDI G
Sbjct: 439 DIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA------ILSDILG 492
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKV G GIT+ QMDIK+GG+T ++++AL QA +GR+HIL EM K
Sbjct: 493 DEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMAKALSA 552
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P S+S +AP I +K++PE+I IIG GGK +K I TG +I+ EDDG+V I + +
Sbjct: 553 PRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGT-SINIEDDGSVSIASPNQ 611
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E++ +I LT VG IY ++ IA +G FVEI PG +GL HISELS +
Sbjct: 612 DKVEEAIKMIRGLTQEAEVGRIYLGT-VRKIAEFGAFVEIFPGTDGLIHISELSDKRVKS 670
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTK 855
DV+ G+ V VK+I V+ G++RLSR+ L ++ ++ + P G+P K
Sbjct: 671 VSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAKKSEGTEPPKGEPAK 721
>gi|239826663|ref|YP_002949287.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp. WCH70]
gi|259534128|sp|C5D9D5.1|PNP_GEOSW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|239806956|gb|ACS24021.1| 3' exoribonuclease [Geobacillus sp. WCH70]
Length = 712
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/743 (41%), Positives = 449/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R ++VE G + +QA+GAV V G+T++ + A ++ DFFPL VNY+ER
Sbjct: 10 IDWAGRPLVVEIGQLAKQANGAVLVRYGDTVVLNTAT-ASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP +GF +E QI+S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQIVSMVMSVDQDCSPEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A +A+ +S++P IAGV VG V +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AALFGASLALTISDIPFEGPIAGVTVGRVDGEFVINPTVEQSEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + V+ + + + GK KM + P+L + +
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ + +Q+ K+ R A+ ++ V+ E+++
Sbjct: 249 LAEEDIKRAVQVPEKLARDAAIEEVKASVIA----------------------KYEEQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE T +E+ KLV +EV RR I E R DGR
Sbjct: 287 DEE---------------------TLKQVNEILHKLVKEEV-----RRLITEEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L +E KRF
Sbjct: 321 KIDEIRPLSSEVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGL-GIEETKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDNY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR IL M++ P LSK+A
Sbjct: 494 FKVAGTAKGVTALQMDIKIKGLSREILEEALQQAKKGRMEILEHMMQTIREPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M++ PEKI +IG GK++ II+ETGV+ ID E DGT+ I++ + + +K+K I
Sbjct: 554 PKILTMQINPEKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVNEAMNQKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG IY ++K I +G FVE+ G++GL HISEL+ + + EDVV +GD
Sbjct: 613 IEDIVREVEVGQIYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK++E++ +G++ LSR+A+L
Sbjct: 672 EILVKVMEIDKQGRVNLSRKAVL 694
>gi|393765757|ref|ZP_10354318.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
GXF4]
gi|392728993|gb|EIZ86297.1| polynucleotide phosphorylase/polyadenylase [Methylobacterium sp.
GXF4]
Length = 740
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 318/742 (42%), Positives = 440/742 (59%), Gaps = 61/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GDR++++ETG + RQA GAV T GET + +V P DF PL VNYQER AA
Sbjct: 11 WGDRKLVLETGKVARQADGAVLATYGETSVLATVVATKEPKPGIDFLPLTVNYQERAYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREGR + E LV RLIDRP+RP + G+ ++TQ++ VL++D + PD ++
Sbjct: 71 GRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVNGWRNDTQVVVTVLTHDLENDPDIVS 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNP-TTQEMEDSQLDLLLAGSDDAILMI 274
+ AA A+ LS VP I RVG V + +NP T+ E+S LDL++AG+ DA+LM+
Sbjct: 131 MVAASAALTLSGVPFMGPIGAARVGYVNGGYKLNPLVTETKEESSLDLVVAGTQDAVLMV 190
Query: 275 EGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHVEE 333
E LSE++++ AV G + + + L E K P+ D ++ K V E
Sbjct: 191 ESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPR--DFQAPENADVEKAVLE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I EL K R A+ +++ KV+ L
Sbjct: 249 ICETELRAAYTKTVKQERYAAVDAVKAKVMAALC-------------------------- 282
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
P+ + P VK FKE SK +R +++ G R DGR
Sbjct: 283 ------------------PEGTEKYPA----EKVKAAFKEAQSKVVRWNVLDTGSRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI S G+LPRAHGS+LFTRGETQ+L V TLG + Q ID+L+ + +RF L
Sbjct: 321 DLKTVRPIISEVGVLPRAHGSSLFTRGETQALVVATLGTGEDEQFIDSLDGTYK-ERFLL 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP ++FPYTIR+ S ITESNGSS
Sbjct: 380 HYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAHEFPYTIRIVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGG L+L DAGVP++ +AG+AMG++L+ + F +LSDI G ED GDMD
Sbjct: 440 SMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFA------VLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG ++G+T+ QMDIK+ GIT +M+ AL QAKDGR HIL+EM K L ++A
Sbjct: 494 FKVAGTDEGVTSLQMDIKIAGITEEIMRVALDQAKDGRAHILSEMSKALTAARPELGEYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M++ +KI +IG+GGK ++ I+E+TG + I+ ED G VKI + D +++ +
Sbjct: 554 PRIETMQIPTDKIRDVIGTGGKVIREIVEKTGAK-INIEDTGIVKIASADGKAIKAAYNW 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ P G IY +K + +G FV ++GL HISEL++ +AK DVVK GD
Sbjct: 613 IRSIVAEPETGMIYDGTIVKCM-EFGAFVNFFGAKDGLVHISELAAQRVAKVTDVVKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
V VK + +D+G++RLS R +
Sbjct: 672 KVKVKFLGQDDRGKIRLSMRVV 693
>gi|257457660|ref|ZP_05622827.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
35580]
gi|257445046|gb|EEV20122.1| polyribonucleotide nucleotidyltransferase [Treponema vincentii ATCC
35580]
Length = 703
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/748 (42%), Positives = 447/748 (59%), Gaps = 68/748 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q V+ KI G+ ++++ETGH+ +QA+GA+ G T + +VC + E D+ P+ V+
Sbjct: 8 QRVTYKI--GNEELILETGHLAKQANGAIYAQYGGTAVLATVCASSTAVEGLDYVPVTVD 65
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E++ AAG+ GGF KREGR KD E+LV RLIDRP+RP K F E QI+ +S D
Sbjct: 66 YNEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKAFGREIQIVPTCISSDM 125
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ PD LAV A+ AV +S++P + +AG RV + +F++NPT ++E + +++++AG+
Sbjct: 126 INPPDILAVIASSAAVVISDIPFNGPVAGARVAYLDGEFVINPTFSQIEKADMEIVVAGT 185
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM----LDTIKLP 323
+ I M+EG +SEE++++A++ + ++ + L CGK K+ ++
Sbjct: 186 AEGITMVEGGAHEVSEEIMLKALEKAHEFIKAMCALQNELRAACGKEKLPLAPVNATLAN 245
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
+Y A EL K L K K+ RR+A ++ + + E
Sbjct: 246 KDAIYAK----AYPELSKALYTKGKVERREACDAIRK------------------ALAEE 283
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ L DE + + LF+ + F ++ LR I
Sbjct: 284 YAEQLADETQAK-------------------------LFAAL-----FDDMEYHILRENI 313
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+E G R DGR + IRPI+ G+LPR HGSA+FTRGETQSLAV+TLG Q D++E
Sbjct: 314 LEKGLRVDGRGLEDIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIE 373
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
D + F L Y+FPP SVGEVGR+G RREIGHG LA R+L P++PS FPYTIRV
Sbjct: 374 GDRR-ENFILHYNFPPYSVGEVGRLGT-GRREIGHGHLAHRSLMPMIPSREAFPYTIRVV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S I ESNGSSSMA+VCGG L+L AGVP+K +AG+AMG++ D F +LSDI
Sbjct: 432 SEILESNGSSSMATVCGGTLSLLHAGVPMKKPVAGIAMGLITDGSRFA------VLSDIL 485
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG +GIT FQMDIK+ G++ +MKKAL+QAK GR HIL M +
Sbjct: 486 GEEDHLGDMDFKVAGTAEGITGFQMDIKIAGVSAEIMKKALEQAKKGRLHILGIMNQTIS 545
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
PS +SK+AP I +K+ +KI +IG GGK +K++ E+ V I+TE+DGTV I +D
Sbjct: 546 KPSEQVSKYAPRIETLKIPVDKIGALIGPGGKIIKALSEQYHV-TINTENDGTVTIYGRD 604
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
SS +KA + + P VG IY +K I +G F+EI PG+EGLCHIS+LS N +
Sbjct: 605 SSSAIGAKAAVIGIVEDPEVGRIYEGT-VKCIKDFGAFIEILPGKEGLCHISKLSRNRIE 663
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLS 831
K DV++ G V VKL+E++ G+L LS
Sbjct: 664 KVTDVLQEGQKVPVKLLEIDKLGRLNLS 691
>gi|393776293|ref|ZP_10364589.1| polynucleotide phosphorylase polyadenylase [Ralstonia sp. PBA]
gi|392716682|gb|EIZ04260.1| polynucleotide phosphorylase polyadenylase [Ralstonia sp. PBA]
Length = 735
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 325/773 (42%), Positives = 448/773 (57%), Gaps = 68/773 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q + + +G + +ETG + RQASGAV V ET++ +V A DFFPL V+
Sbjct: 3 QKIVKEFQWGGHTVRMETGEIARQASGAVLVNVDETVVLATVVGAKKAKPGQDFFPLTVD 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E+ AAG+ GGFFKREGR + E L RLIDRPLRP +GFY+E Q++ V+S +
Sbjct: 63 YLEKTYAAGKIPGGFFKREGRPSEFETLTSRLIDRPLRPLFPEGFYNEVQVVIHVVSLNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
D A+ A A+A+S +P + + RVG ++++NPT + S+LDL++AG+
Sbjct: 123 DVPADIPALIGASAALAVSGLPFNGPVGAARVGYKDGQYLLNPTRTQQATSELDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E LSEE+++ AV G + ++ N + LV GKP+ D P E
Sbjct: 183 EAAVLMVESEAQQLSEEIMLGAVVFGHEQMQTAINAIHDLVREGGKPEW-DWAPAPKNEA 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V E+A +L + QI+ K R + L + V+ L+E G +
Sbjct: 242 LLAKVAEVAEPQLREAYQIREKQARSQKLKLVAPAVMEKLAEAGIEA------------- 288
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+EVDV + ++ +K +R +I+ G
Sbjct: 289 ------------------------------------TEVDVGNMIFDLEAKIVRGQILSG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI R G+LPRAHGSALFTRGETQ+L V TLG + Q ID L S +
Sbjct: 313 EPRIDGRDTRTVRPIEIRNGVLPRAHGSALFTRGETQALVVATLGTGRDEQIIDAL-SGE 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL PVLP+ +F YT+RV S I
Sbjct: 372 YRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAPVLPTPEEFAYTVRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCL++ DAGVP+K +AGVAMG++LD ++F +L+DI G E
Sbjct: 432 TESNGSSSMASVCGGCLSMIDAGVPLKAHVAGVAMGLILDGNKFA------VLTDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGITA QMDIKV GIT +M+ AL QAK+GR HIL +M
Sbjct: 486 DHLGDMDFKVAGTADGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMAAAMEGVE 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS HAP + MK+ P+KI +IG GG ++++ +ETG +ID ++DGT+ I +
Sbjct: 546 VGLSAHAPRMITMKIHPDKIREVIGKGGSTIQALTKETGT-SIDIQEDGTITIASTSAEG 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E++K I +T VG IY +K + +G V I PG++GL HISE+ + + +
Sbjct: 605 MEEAKRRIEGITAEAEVGKIYGGTVLK-LLDFGAIVNILPGKDGLLHISEIVNERVKDIK 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRA--------LLPEADAENPPVKLPTG 851
D +K G V VKLI+ ++KG+LRLS +A L P+A AE P P G
Sbjct: 664 DWLKEGQQVRVKLIQADEKGRLRLSIKAAVADEGGGLTPQAPAEGAPAAQPGG 716
>gi|238755159|ref|ZP_04616505.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
gi|238706606|gb|EEP98977.1| hypothetical protein yruck0001_25730 [Yersinia ruckeri ATCC 29473]
Length = 706
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 312/743 (41%), Positives = 438/743 (58%), Gaps = 58/743 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 VNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK ++ LY
Sbjct: 184 AAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEVLY 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V+E+A L +I K R + +++ V+ L +++DET+ E I D+L
Sbjct: 244 ARVKELASARLGDAYRITEKQERYTQVDAIKANVIEAL-----LAQDETLDTSE-IQDIL 297
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
++D +R R++ G
Sbjct: 298 GSVEKD-------------------------------------------VVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-RT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S ITE
Sbjct: 374 DSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTIRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V D + F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ +GITA QMDIK+ GIT +M++AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP I+ MK+ +KI +IG GG ++++ EETG I+ EDDGT+KI A D +
Sbjct: 548 ISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTIKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 HAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 666 LQMGQEVPVKVMEVDRQGRIRLS 688
>gi|23503016|ref|NP_699143.1| polynucleotide phosphorylase [Brucella suis 1330]
gi|376281812|ref|YP_005155818.1| polynucleotide phosphorylase/polyadenylase [Brucella suis VBI22]
gi|384225804|ref|YP_005616968.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|81751805|sp|Q8FXS9.1|PNP_BRUSU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|23349057|gb|AAN31058.1| polyribonucleotide nucleotidyltransferase [Brucella suis 1330]
gi|343383984|gb|AEM19476.1| polynucleotide phosphorylase/polyadenylase [Brucella suis 1330]
gi|358259411|gb|AEU07146.1| polynucleotide phosphorylase/polyadenylase [Brucella suis VBI22]
Length = 714
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 325/758 (42%), Positives = 449/758 (59%), Gaps = 70/758 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + +D I
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS LE KVL ++ EN DL
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSELEAKVLAVV-EN----------------DLR 254
Query: 389 E----DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
E E + VD + H P+ + T M S +FK + +K +R I+
Sbjct: 255 EAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEM--SAEQFATIFKHLQAKIVRWNIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 313 DTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S
Sbjct: 373 TYK-ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G
Sbjct: 432 EITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 486 DEDYLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 546 SRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 605 KEIEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 664 TTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|384159348|ref|YP_005541421.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|384164217|ref|YP_005545596.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
gi|384168395|ref|YP_005549773.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens XH7]
gi|328553436|gb|AEB23928.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens TA208]
gi|328911772|gb|AEB63368.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
LL3]
gi|341827674|gb|AEK88925.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens XH7]
Length = 707
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/743 (42%), Positives = 449/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VETG + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + +FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSEKVKS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ +++ V V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINKVKDAV---------VAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|308173632|ref|YP_003920337.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
gi|307606496|emb|CBI42867.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
DSM 7]
Length = 705
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/743 (42%), Positives = 449/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VETG + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVETGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + +FI+NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGQFIINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDAELSEKVKS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ +++ V V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINKVKDAV---------VAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|225075235|ref|ZP_03718434.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
gi|224953410|gb|EEG34619.1| hypothetical protein NEIFLAOT_00235 [Neisseria flavescens
NRL30031/H210]
Length = 707
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/744 (42%), Positives = 440/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D LSEE+++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELLAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|197121578|ref|YP_002133529.1| polynucleotide phosphorylase/polyadenylase [Anaeromyxobacter sp. K]
gi|226702594|sp|B4UHG5.1|PNP_ANASK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|196171427|gb|ACG72400.1| Polyribonucleotide nucleotidyltransferase [Anaeromyxobacter sp. K]
Length = 721
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 317/771 (41%), Positives = 451/771 (58%), Gaps = 56/771 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ G + IL+ETG + +QA G+V V G++I+ + A E DFFPL V+Y
Sbjct: 3 PIQKTATVGGKDILLETGKVAKQAHGSVWVRLGDSIVLVTAVSAAEKKEGIDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QE+ AAGR G FF+REGR + E L RL+DR RP +G+ +ETQ+++ V+S+D
Sbjct: 63 QEKLFAAGRVPGSFFRREGRPTEKETLTSRLVDRSCRPLFAEGYSNETQVIATVISFDQE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ D LA+T A A+ +S++P IAGVRV VG + + NPT + ++ LD+++A S
Sbjct: 123 NDTDVLALTGASAALHISDIPFGGPIAGVRVARVGGQLVANPTLAQRAEADLDVVMAASR 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--- 325
DAI+M+EG +SE ++I+A+ GQ AV+ + + AL G PP
Sbjct: 183 DAIVMVEGGAQEVSEAVMIEALLFGQAAVQPLLDAQDALRAATGNKARRS---FDPPKND 239
Query: 326 -ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
EL V+ + E++ + K R LS +++++L L KDE G
Sbjct: 240 VELRAKVKALTWEKVKEAYGRNEKHDRYGRLSEIKKELLQAL-------KDEAAG----- 287
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+ K + E ++K +++V ++R+ I
Sbjct: 288 ----------------------------DAAKLATIALREKEIKGYYEDVKYDYMRKMIT 319
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ RR GR IR I+ GLLPR HGS+LFTRGETQ+L TLG + QR++ L +
Sbjct: 320 DERRRIGGRGMADIRKITCEVGLLPRVHGSSLFTRGETQALVATTLGTAEDEQRVEML-T 378
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
K+F L Y+FPP SVGEV + +P RREIGHG LAERAL V+P ++ FPYT+RV S
Sbjct: 379 GMVFKKFMLHYNFPPFSVGEVKFLRSPGRREIGHGALAERALRAVMPPEDQFPYTVRVVS 438
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + ++ ILSDI G
Sbjct: 439 DIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLIKEGEKIA------ILSDILG 492
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKV G GIT+ QMDIK+GG+T ++++AL QA +GR+HIL EM K
Sbjct: 493 DEDHLGDMDFKVCGTAAGITSIQMDIKIGGVTRDILEQALAQAAEGRKHILGEMAKALSA 552
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P S+S +AP I +K++PE+I IIG GGK +K I TG +I+ EDDG+V I + +
Sbjct: 553 PRGSISAYAPRITTIKIRPERIKDIIGPGGKTIKDITARTGT-SINIEDDGSVSIASPNQ 611
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E++ +I LT VG IY ++ IA +G FVEI PG +GL HISELS +
Sbjct: 612 DKVEEAIKMIRGLTQEAEVGRIYLGT-VRKIAEFGAFVEIFPGTDGLIHISELSDKRVKS 670
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTK 855
DV+ G+ V VK+I V+ G++RLSR+ L ++ ++ + P G+P K
Sbjct: 671 VSDVLSEGEEVMVKVISVDRSGKIRLSRKEALADSAKKSEGTEPPKGEPAK 721
>gi|429505223|ref|YP_007186407.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|429486813|gb|AFZ90737.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 707
Score = 554 bits (1427), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/743 (42%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VE G + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + KF++NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIQLYEIDEELSEKVKS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ ++ N V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINEVK---------NAVVAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMNINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|152976173|ref|YP_001375690.1| polynucleotide phosphorylase/polyadenylase [Bacillus cytotoxicus
NVH 391-98]
gi|187470935|sp|A7GRD7.1|PNP_BACCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|152024925|gb|ABS22695.1| Polyribonucleotide nucleotidyltransferase [Bacillus cytotoxicus NVH
391-98]
Length = 710
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 312/745 (41%), Positives = 448/745 (60%), Gaps = 58/745 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVL-STATASKEAKDVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +FI+NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + +V+ GK KM + EL K V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKMEVKLYEVDAELEKAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ E++
Sbjct: 249 MAEKDMHTAIQVHEKHAREDAINEVKQRVIA------------------------HYEEQ 284
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+ E V G+V SE+ K+V +EV RR I R DGR
Sbjct: 285 EVEAEVLGQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+D IRP++S G+LPR HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KSDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS++A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRKELSEYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ D EK+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSIDQQMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K I +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRIEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPE 838
+ VK+IE++ +G++ LSR+ LL E
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLLKE 696
>gi|148559480|ref|YP_001259963.1| polynucleotide phosphorylase/polyadenylase [Brucella ovis ATCC
25840]
gi|187470942|sp|A5VTB6.1|PNP_BRUO2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|148370737|gb|ABQ60716.1| polyribonucleotide nucleotidyltransferase [Brucella ovis ATCC
25840]
Length = 714
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 324/758 (42%), Positives = 449/758 (59%), Gaps = 70/758 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTIETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + +D I
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS LE KVL ++ EN DL
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSELEAKVLAVV-EN----------------DLR 254
Query: 389 E----DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
E E + VD + H P+ + T ML + +F + +K +R I+
Sbjct: 255 EAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEMLAEQF--ATIFTHLQAKIVRWNIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 313 DTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S
Sbjct: 373 TYK-ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G
Sbjct: 432 EITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 486 DEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 546 SRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 605 KEIEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 664 TTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase [Brucella abortus bv. 1 str. 9-941]
gi|82700915|ref|YP_415489.1| polynucleotide phosphorylase/polyadenylase [Brucella melitensis
biovar Abortus 2308]
gi|161620077|ref|YP_001593964.1| polynucleotide phosphorylase/polyadenylase [Brucella canis ATCC
23365]
gi|163844182|ref|YP_001628587.1| polynucleotide phosphorylase/polyadenylase [Brucella suis ATCC
23445]
gi|189025218|ref|YP_001935986.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus S19]
gi|237816509|ref|ZP_04595502.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256370564|ref|YP_003108075.1| polynucleotide phosphorylase/polyadenylase [Brucella microti CCM
4915]
gi|260546269|ref|ZP_05822009.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260567364|ref|ZP_05837834.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260755840|ref|ZP_05868188.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260759063|ref|ZP_05871411.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260884865|ref|ZP_05896479.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|261215115|ref|ZP_05929396.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|261221215|ref|ZP_05935496.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261314798|ref|ZP_05953995.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261316643|ref|ZP_05955840.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261755873|ref|ZP_05999582.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|261759100|ref|ZP_06002809.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|265983164|ref|ZP_06095899.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|265987715|ref|ZP_06100272.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|265997176|ref|ZP_06109733.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|294851394|ref|ZP_06792067.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297247393|ref|ZP_06931111.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306839947|ref|ZP_07472741.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|306842722|ref|ZP_07475365.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|340791750|ref|YP_004757215.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|376272110|ref|YP_005150688.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus
A13334]
gi|376275245|ref|YP_005115684.1| polynucleotide phosphorylase/polyadenylase [Brucella canis HSK
A52141]
gi|423167871|ref|ZP_17154574.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI435a]
gi|423169753|ref|ZP_17156428.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI474]
gi|423175257|ref|ZP_17161926.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI486]
gi|423177893|ref|ZP_17164538.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI488]
gi|423179186|ref|ZP_17165827.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI010]
gi|423182317|ref|ZP_17168954.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI016]
gi|423186741|ref|ZP_17173355.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI021]
gi|423190823|ref|ZP_17177431.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI259]
gi|75496015|sp|Q57A96.1|PNP_BRUAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123727384|sp|Q2YQR3.1|PNP_BRUA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037301|sp|A9M9Z8.1|PNP_BRUC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037302|sp|B0CK15.1|PNP_BRUSI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702625|sp|B2S9G0.1|PNP_BRUA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|62197138|gb|AAX75438.1| Pnp, polyribonucleotide nucleotidyltransferase [Brucella abortus
bv. 1 str. 9-941]
gi|82617016|emb|CAJ12125.1| Ribosomal protein S1:3' exoribonuclease:RNA binding S1:KH domain:KH
domain, type 1 [Brucella melitensis biovar Abortus 2308]
gi|161336888|gb|ABX63193.1| Polyribonucleotide nucleotidyltransferase [Brucella canis ATCC
23365]
gi|163674905|gb|ABY39016.1| Polyribonucleotide nucleotidyltransferase [Brucella suis ATCC
23445]
gi|189020790|gb|ACD73512.1| Ribosomal protein S1 [Brucella abortus S19]
gi|237788576|gb|EEP62791.1| Polyribonucleotide nucleotidyltransferase [Brucella abortus str.
2308 A]
gi|256000727|gb|ACU49126.1| polyribonucleotide nucleotidyltransferase [Brucella microti CCM
4915]
gi|260096376|gb|EEW80252.1| ribosomal protein S1 [Brucella abortus NCTC 8038]
gi|260156882|gb|EEW91962.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40]
gi|260669381|gb|EEX56321.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 4
str. 292]
gi|260675948|gb|EEX62769.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 6
str. 870]
gi|260874393|gb|EEX81462.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 9
str. C68]
gi|260916722|gb|EEX83583.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 3
str. Tulya]
gi|260919799|gb|EEX86452.1| polyribonucleotide nucleotidyltransferase [Brucella ceti B1/94]
gi|261295866|gb|EEX99362.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
B2/94]
gi|261303824|gb|EEY07321.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M163/99/10]
gi|261739084|gb|EEY27080.1| ribosomal protein S1 [Brucella sp. F5/99]
gi|261745626|gb|EEY33552.1| polyribonucleotide nucleotidyltransferase [Brucella suis bv. 3 str.
686]
gi|262551644|gb|EEZ07634.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M490/95/1]
gi|264659912|gb|EEZ30173.1| polyribonucleotide nucleotidyltransferase [Brucella pinnipedialis
M292/94/1]
gi|264661756|gb|EEZ32017.1| polyribonucleotide nucleotidyltransferase [Brucella sp. 83/13]
gi|294819983|gb|EFG36982.1| polyribonucleotide nucleotidyltransferase [Brucella sp. NVSL
07-0026]
gi|297174562|gb|EFH33909.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 5
str. B3196]
gi|306287168|gb|EFM58670.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. BO2]
gi|306404911|gb|EFM61196.1| polynucleotide phosphorylase/polyadenylase [Brucella sp. NF 2653]
gi|340560209|gb|AEK55447.1| polynucleotide phosphorylase/polyadenylase [Brucella pinnipedialis
B2/94]
gi|363399716|gb|AEW16686.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus
A13334]
gi|363403812|gb|AEW14107.1| polynucleotide phosphorylase/polyadenylase [Brucella canis HSK
A52141]
gi|374535701|gb|EHR07222.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI486]
gi|374539620|gb|EHR11123.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI435a]
gi|374543432|gb|EHR14915.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI474]
gi|374549095|gb|EHR20541.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI488]
gi|374552130|gb|EHR23559.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI016]
gi|374552502|gb|EHR23930.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI010]
gi|374554593|gb|EHR26004.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI259]
gi|374557453|gb|EHR28849.1| polyribonucleotide nucleotidyltransferase [Brucella abortus bv. 1
str. NI021]
Length = 714
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 325/758 (42%), Positives = 449/758 (59%), Gaps = 70/758 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + +D I
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS LE KVL ++ EN DL
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSELEAKVLAVV-EN----------------DLR 254
Query: 389 E----DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
E E + VD + H P+ + T M S +FK + +K +R I+
Sbjct: 255 EAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEM--SAEQFATIFKHLQAKIVRWNIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 313 DTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S
Sbjct: 373 TYK-ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G
Sbjct: 432 EITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 486 DEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 546 SRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 605 KEIEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 664 TTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|294670819|ref|ZP_06735675.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307306|gb|EFE48549.1| hypothetical protein NEIELOOT_02522 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 701
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 317/750 (42%), Positives = 445/750 (59%), Gaps = 62/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA+ AV V+ G+T++ +V DFFPL V+Y ER AA
Sbjct: 11 YGKHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTADKEVKAGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSLDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG +++NPT E+E SQLDL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYADGAYLLNPTKSELEKSQLDLVVAGTAKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G + ++ + + L + P++ D K P EL V E
Sbjct: 191 SEAQILPEDVMLGAVVYGHEQMQAVIAAINELADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAG + + +I++K R ++ E VE L +ED
Sbjct: 249 IAGATIAEAFKIRSKQARSAKIA-------------------EAWSAVEA---ALINEDT 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK + + +R +I++G R DGR
Sbjct: 287 D--------------------------TLAANEIKGIFKHLEADVVRGQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPEPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL+QAK+ R +ILA+M + P LS+HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLYILAQMKEAVDGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ MK+ P+KI +IG GG+ +++I ETG E I+ EDDGTV I A + E ++
Sbjct: 553 PRLYTMKINPDKIREVIGKGGETIRAITAETGTE-INIEDDGTVTIAATTSEAGEAARKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG IY +K + G V + PG++GL HISE++ + D ++VG
Sbjct: 612 IEEITAEVEVGKIYEGTVVKILDNNVGAIVTVMPGKDGLVHISEIAHERVKNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V+VK + V+D+G++RLS +ALL + AE
Sbjct: 672 QTVNVKALAVDDRGRVRLSMKALLDKPAAE 701
>gi|157692352|ref|YP_001486814.1| polynucleotide phosphorylase/polyadenylase [Bacillus pumilus
SAFR-032]
gi|187470936|sp|A8FDD7.1|PNP_BACP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157681110|gb|ABV62254.1| polyribonucleotide nucleotidyltransferase [Bacillus pumilus
SAFR-032]
Length = 705
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VETG + +QA+GAV V G+T + +S + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V KFI+NP +++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKFIINPNVEQLEQSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G ++ + + +V+ GK K+ + L V+
Sbjct: 189 VEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKAKIDIPLYEVDQTLADEVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+K +Q+ K R A+S++++ V+ + E+ED
Sbjct: 249 LAETDLLKAIQVHEKHAREDAISAVKKAVV----------------------EKFEEEDR 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE + + +V KLV EV RR I E R DGR
Sbjct: 287 DEATIKQAK---------------------DVLNKLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR IL ML P LS++A
Sbjct: 494 FKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTIPTSRGELSRYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I MK+ P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ + +K+K I
Sbjct: 554 PKILTMKINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTEEDMNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G F+EI G++GL HISEL+ + + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFLEIFSGKDGLVHISELALDRVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 ELLVKVTEIDKQGRVNLSRKAVL 694
>gi|306843586|ref|ZP_07476187.1| polynucleotide phosphorylase/polyadenylase [Brucella inopinata BO1]
gi|306276277|gb|EFM57977.1| polynucleotide phosphorylase/polyadenylase [Brucella inopinata BO1]
Length = 714
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 325/758 (42%), Positives = 449/758 (59%), Gaps = 70/758 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + +D I
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS LE KVL ++ EN DL
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSELEAKVLAVV-EN----------------DLR 254
Query: 389 E----DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
E E + VD + H P+ + T M S +FK + +K +R I+
Sbjct: 255 EAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEM--SAEQFATIFKHLQAKIVRWNIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR +RPI S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 313 DTGNRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S
Sbjct: 373 TYK-ETFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G
Sbjct: 432 EITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 486 DEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 546 SRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 605 KEIEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 664 TTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|154686086|ref|YP_001421247.1| polynucleotide phosphorylase [Bacillus amyloliquefaciens FZB42]
gi|384265253|ref|YP_005420960.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385264795|ref|ZP_10042882.1| polynucleotide phosphorylase [Bacillus sp. 5B6]
gi|387898250|ref|YP_006328546.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens Y2]
gi|452855616|ref|YP_007497299.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|187470933|sp|A7Z4U0.1|PNP_BACA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154351937|gb|ABS74016.1| PnpA [Bacillus amyloliquefaciens FZB42]
gi|380498606|emb|CCG49644.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385149291|gb|EIF13228.1| polynucleotide phosphorylase [Bacillus sp. 5B6]
gi|387172360|gb|AFJ61821.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens Y2]
gi|452079876|emb|CCP21634.1| polynucleotide phosphorylase (PNPase) [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 707
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/743 (42%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VE G + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + KF++NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSEKVKS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ ++ N V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINEVK---------NAVVAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMNINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|402490857|ref|ZP_10837646.1| polynucleotide phosphorylase/polyadenylase [Rhizobium sp. CCGE 510]
gi|401810883|gb|EJT03256.1| polynucleotide phosphorylase/polyadenylase [Rhizobium sp. CCGE 510]
Length = 712
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 318/749 (42%), Positives = 447/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS +P + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTYDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEVMLGAVMFGHKGFQPVLDAIIKLAEVAAKEPRDFQPEDHSELEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + +I K R A+ +++ KV G
Sbjct: 245 MLKHFEA----ELREGYKITQKADRYAAVDAVKAKVKAHFFPEG---------------- 284
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
++PK +S + VFK + +K +R I++
Sbjct: 285 -----------------------VEPK--------YSAEVIGAVFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTPEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ D F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR HIL EM K
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRTHILGEMSKAITESR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P +G +Y +K+ A +G FV R+GL HIS+L+S +AK +
Sbjct: 606 IEAARKWIHSIVAEPEIGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 665 DVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|336317257|ref|ZP_08572124.1| polyribonucleotide nucleotidyltransferase [Rheinheimera sp. A13L]
gi|335878557|gb|EGM76489.1| polyribonucleotide nucleotidyltransferase [Rheinheimera sp. A13L]
Length = 710
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/765 (40%), Positives = 444/765 (58%), Gaps = 61/765 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ FG I +ETG + RQA AV + G+T + +V P DFFPL VN
Sbjct: 2 NPIVKSFQFGQHTITLETGVIARQADAAVLASMGDTSVLVTVVAKKQPKPGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+ AAGR GGFFKREGR + E L RLIDRP+RP +GF +E Q+++ V+S
Sbjct: 62 YQEKTYAAGRIPGGFFKREGRPSEGETLTSRLIDRPIRPLFPEGFTNEVQVIATVVSVQP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +++ A A+A+S +P S + RVG V ++++NP+ E++DS+LDL++AG+
Sbjct: 122 EIQPDIISIIATSAALAISGIPFSGPLGAARVGYVNSQYVLNPSETELKDSKLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E LSEE+++ AV G D ++ + N + KP + +
Sbjct: 182 ANAVLMVESEAGVLSEEVMLGAVVFGHDQMQTVINAINEFAAEAAKPVWNWVAPVKNATV 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ E+A + + +I K R +A+ +++ +V
Sbjct: 242 TSKIAELATAPVGEAYRITEKAKRYEAIGAIKAEVFA----------------------- 278
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+ E+ EG+ F+E + +F + S+ +R RI++G
Sbjct: 279 ----------QIKAELAEGEG-------------FNETEANEIFHNLESQIVRSRIIKGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR + IR +S GLLPR HGSALFTRGETQ+L TLG + AQ +D+L S+ +
Sbjct: 316 PRIDGRDNEMIRALSVMTGLLPRTHGSALFTRGETQALVTCTLGTARDAQTVDDLLSE-K 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P NDFPYT+R+ S IT
Sbjct: 375 TDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVAAVMPDFNDFPYTVRMVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEGNDF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +GITA QMDIK+ GIT +M+ AL+QAK R HIL M +
Sbjct: 489 HLGDMDFKVAGTTEGITALQMDIKIEGITREIMQIALKQAKAARIHILNVMDQAISTHRE 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS+HAP I+ +K+ PEKI +IG GG ++ I EE+G I+ EDDGTVKI A + +
Sbjct: 549 ELSEHAPRIYTLKINPEKIRDVIGKGGAVIRQITEESGT-TIEIEDDGTVKIAATNSQAA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ I +T VG +Y+ E+ I +G FV + PG++GL HIS++S ++ D
Sbjct: 608 NIAINRIEAITAEIEVGAVYQG-EVVRIVDFGAFVNVLPGKDGLVHISQISDERVSNVAD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
+ +G V VK++EV+ +G++RLS + +A++ P + + D
Sbjct: 667 HLVIGQKVAVKVMEVDKQGRVRLSIK------EAQDKPAAVESAD 705
>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
Length = 715
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 319/761 (41%), Positives = 447/761 (58%), Gaps = 60/761 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 13 WGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M+DS LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQMKDSALDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
LSEE+++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEAQQLSEEVMLGAVVFGHEQMQAAIDAIHDLVREGGKPEW-DWQPAPKNEPLIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A +L+ QI++K R L + V L +
Sbjct: 252 AQADLLAAYQIRDKQARSTKLKEVYAAVSAKL---------------------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE G V + K+T V V ++ +K +R +I+ G R DGR
Sbjct: 285 EEAAASGTV---------AADKAT--------VGNVLFDIEAKIVRTQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGIVTIASTSSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K G
Sbjct: 620 ENITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKDGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTK 855
V VK+I+ ++KG++RLS +ALL E P G+PT+
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEGAP-----GAPQGEPTQ 714
>gi|393758488|ref|ZP_10347309.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|393164907|gb|EJC64959.1| polynucleotide phosphorylase/polyadenylase [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
Length = 712
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/746 (41%), Positives = 443/746 (59%), Gaps = 53/746 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G+ +++ETG + RQASGAV V+ +T++ +V A DFFPL V+Y
Sbjct: 5 VTKSFQYGEHTVVLETGEIARQASGAVLVSIEDTVVLATVVGASKAKAGQDFFPLTVDYV 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ +AG+ GGFFKREGR + E+L+ RLIDRPLRP +GFY+E Q++ +S +
Sbjct: 65 EKTYSAGKIPGGFFKREGRQSEREILISRLIDRPLRPLFPEGFYNEVQVIIHTVSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P + + RVG + ++++NP+ +++ S LDL++AG++
Sbjct: 125 DPDIAAMIGASAALAISGIPFNGPVGAARVGYIDGQYVLNPSATQLKSSDLDLVVAGTEQ 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSEE+++ V + ++ N + LVE GKP+ L
Sbjct: 185 AVLMVESEAKQLSEEVMLGGVVFAHEQMQAAINCIHELVEEAGKPEWDWQPAAVNESLLA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V A E L + Q + K R + L ++ Y ETV L +
Sbjct: 245 SVSAAAEEGLKQAYQTREKQARTEQLRAV------------YAHAKETV--------LAQ 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
E +E +P MLF ++ SK +R RI+ G R
Sbjct: 285 AEANGQE--------------QPDMVAVENMLF----------DLESKIVRSRILSGESR 320
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPIS R G+LPRAHGSALFTRGETQ+L V TLG KQ Q ID++ +
Sbjct: 321 IDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIIDSIMGEYR-D 379
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF + Y+ PP + GE GR GAP RREIGHG LA+RAL P+LP+ DF Y+IRV S ITES
Sbjct: 380 RFMMHYNMPPFATGEAGRFGAPKRREIGHGRLAKRALTPLLPAAEDFQYSIRVVSEITES 439
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGG L++ DAGVP++ +AGVAMG++ + ++F +L+DI G ED
Sbjct: 440 NGSSSMASVCGGSLSMMDAGVPVQDHVAGVAMGLIKEGNKFA------VLTDILGDEDHL 493
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E GITA QMDIK+ GIT +M+ AL QA +GR HIL +M + +
Sbjct: 494 GDMDFKVAGTEKGITALQMDIKIQGITKEIMQVALAQAHEGRMHILGKMKESIDGSRTEM 553
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S+ AP + +K+ PEKI +IG GG ++++ EETG + ID DDGT+ I + DL +
Sbjct: 554 SEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQ-IDISDDGTITIASADLDKARE 612
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ I LT VG Y ++ + +G V++ PGR+GL HISE+++ +A DV+
Sbjct: 613 AERRIKELTAEVEVGQEYEGPVMR-LLDFGAIVQVLPGRDGLLHISEIANYRIANINDVL 671
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
KVG +V VK+IE ++KG+LRLS +A+
Sbjct: 672 KVGQIVKVKIIEADEKGRLRLSIKAI 697
>gi|226227170|ref|YP_002761276.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
T-27]
gi|257096690|sp|C1A3Y1.1|PNP_GEMAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226090361|dbj|BAH38806.1| polyribonucleotide nucleotidyltransferase [Gemmatimonas aurantiaca
T-27]
Length = 732
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 320/754 (42%), Positives = 459/754 (60%), Gaps = 64/754 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
F R +++ETG M +QA+G+ V GET++ +V +++ S P FFPL V Y+E+ AA
Sbjct: 8 FAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQS-PLPFFPLTVEYKEKTYAA 66
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR DHE+L R+IDR +RP +GF +E Q+ +V+S D + D LA
Sbjct: 67 GKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADVLA 126
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+ S++P IAGVRVG V +++NPT Q++ S L+L++AGS D+I+M+E
Sbjct: 127 LVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSKDSIVMVE 186
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
G +SEE +++++++ D +RE+ + L+ PKM +K PE + V+E+
Sbjct: 187 GGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKM-SWVKAEAPEGITTRVKEL 245
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A + + L K+K R +A+ E+ L+E G++ PD
Sbjct: 246 ASGRIREALNQKDKHTRIEAV----ERTKKELAE----------GLLVEFPD-------- 283
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
+ D+ + +V LR ++++ R DGR
Sbjct: 284 ----------------------------NAKDIGNLLGDVEYHELRSQVLDTQLRVDGRK 315
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR-FYL 513
D +R IS +LPRAHGSALFTRG+TQ+L TLG + AQR+D+++ EV R F L
Sbjct: 316 KDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKEPGEVTRSFML 375
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEV + SRREIGHG LAERAL+ VLP DFPYTIR+ S + ESNGSS
Sbjct: 376 HYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQGVLPDFADFPYTIRIVSDVLESNGSS 435
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGG L+L DAGVP+K ++AGVAMG++ + + + IL+DI G+ED GDMD
Sbjct: 436 SMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYA------ILTDILGTEDHLGDMD 489
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +DGIT+ QMDIK+ G+ + +M++AL QAK GR HIL EM K P LSK+A
Sbjct: 490 FKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEMDKALAAPREDLSKYA 549
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I +++ +KI +IG GK ++ I +ETG E + EDDGTV I A S+E++K +
Sbjct: 550 PRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAE-LSVEDDGTVTIAAVGGDSMERAKQM 608
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
+ +T P VG+ Y +K++ +G FVEI PG E L H+SE+ + K EDVVK GD
Sbjct: 609 VMAITAEPVVGETYEGT-VKTVTAFGAFVEIMPGNEALLHVSEMRWERVEKPEDVVKKGD 667
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADA--ENPP 845
V VKL++ +++G+LRLS +ALLP+ + + PP
Sbjct: 668 RVTVKLVDRDERGRLRLSMKALLPKPEGMPDEPP 701
>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
Length = 706
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/744 (42%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ S+LDL++AG+ A+LM+E
Sbjct: 131 MLGASTALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
LSE++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILSEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L V L I E L +E
Sbjct: 249 IAGEAIKEAFKIRQKQARSAKLDEAWNAVKGAL-------------ITEETDTLAANE-- 293
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+K +FK + + +R +I+EG R DGR
Sbjct: 294 ---------------------------------IKGIFKHLEADVVRTQILEGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAKD R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIRDVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +AL+
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALV 695
>gi|259047075|ref|ZP_05737476.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
ATCC 49175]
gi|259036125|gb|EEW37380.1| polyribonucleotide nucleotidyltransferase [Granulicatella adiacens
ATCC 49175]
Length = 703
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/751 (41%), Positives = 451/751 (60%), Gaps = 62/751 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G RQ+ VE G + +QA+GAV V G+T++ T+ + ++ +DFFPL VNY+E+ AA
Sbjct: 11 WGGRQLQVEIGQLAKQANGAVLVRYGDTVVLTA-AVGTKQAKDTDFFPLTVNYEEKMYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR +H L RLIDRP+RP +GF +E QI + V+S D P+ A
Sbjct: 70 GKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG V ++++NPTT++ ++S ++L +AG+ AI M+E
Sbjct: 130 MFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQKDNSDIELSVAGTATAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
++EE ++ A+ G + ++++ + +V GK KM T+ P + V+++
Sbjct: 190 SSAKEVNEEDMLGALLFGHEEIKKLVAFQEEIVREVGKEKMEVTLLSFDPAIEAQVKDLF 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVL----TILSENGYVSKDETVGIVETIPDLLEDE 391
+ +V +Q + K+ R + ++E + +L EN DE G+++ + L+++
Sbjct: 250 SQAMVHAIQTQEKLAREANIEKVKETAIEHFEAVLEEN-----DEKAGLLKQVSQLVDNL 304
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++DE +RR I E R D
Sbjct: 305 EKDE-------------------------------------------VRRLITEEKVRPD 321
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRP+SS LLPR HGS LFTRG+TQ+L TL Q ID L +E KRF
Sbjct: 322 GRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGL-GIEEGKRF 380
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVG VGR G+P RREIGHG L ERAL+ V+PS DFPYTIR+ S + ESNG
Sbjct: 381 IHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVIPSPEDFPYTIRLVSEVLESNG 440
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSS AS+C G LAL AGVPIK +AG+AMG++ D + +L+DI G ED GD
Sbjct: 441 SSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNY------TVLTDIQGLEDHLGD 494
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +DGITA QMDIK+ GIT ++++AL QAK R IL E+ P LS
Sbjct: 495 MDFKVAGTKDGITALQMDIKIQGITEQILREALTQAKKARFEILEELTSTIAEPRKELSP 554
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I ++ + P+KI ++IG GG+ + SII+ETGV+ ID + +G V I + D + ++++K
Sbjct: 555 YAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVK-IDIDQEGHVSIASTDAAMIQRAK 613
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
II +LT VG +Y ++ I +G FVEIA G++GL HISEL+ + K EDV+ +
Sbjct: 614 EIIEDLTREIEVGQVYEGT-VRRIEKFGAFVEIAKGKDGLVHISELAHERVGKVEDVLAL 672
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VK+IE++ +G++ LSR+ LLP+ D E
Sbjct: 673 GDKVTVKVIEIDGQGRINLSRKVLLPKEDKE 703
>gi|409405576|ref|ZP_11254038.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
GW103]
gi|386434125|gb|EIJ46950.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp.
GW103]
Length = 711
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/758 (41%), Positives = 451/758 (59%), Gaps = 58/758 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
VS +G Q+ +ETG + RQASGAV V+ +T+I +V DFFPL V+Y
Sbjct: 5 VSKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRP+RP +G+ +E Q++ VLS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A++L+ +P + + RVG + ++++NPTT +++ SQLDL++AG++
Sbjct: 125 DPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVAGTET 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E D LSEE+++ AV G D + + + ALV GKP++ + L
Sbjct: 185 AVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWSAPAKNEALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V ++A L + Q K+K R + L ++ +V
Sbjct: 245 RVAQLAEGPLREAYQTKDKQARTEKLKAVSAQV--------------------------- 277
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+E +V + + G + + + +LF ++ +K +R +I+EG R
Sbjct: 278 ----NEALVAEAAANNG---VAADAAEVGSILF----------DLEAKIVRSQILEGEPR 320
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL--ESDDE 507
DGR +RPIS R G+LPR HGSALFTRGETQ+L + TLG + Q+ID L E D
Sbjct: 321 IDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD- 379
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+ PP + GE GR+G P RREIGHG LA+RAL LP+ ++F Y++R+ S IT
Sbjct: 380 --RFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAALPAADEFSYSVRLVSEIT 437
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ + ++F +L+DI G ED
Sbjct: 438 ESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKFA------VLTDILGDED 491
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +GITA QMDIK+ GIT +M+ AL+QAK+GR HIL +M + P
Sbjct: 492 HLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEAVPAGRA 551
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS AP + +K+ PEKI +IG GG ++++ EETG + ID D+G V I + D S+
Sbjct: 552 ELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQ-IDISDEGVVTIASVDASAG 610
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++K I LT VG IY +K + +G V++ PG++GL HIS++++ + D
Sbjct: 611 QEAKRRIEELTASVEVGKIYEGTVLK-LLDFGAIVQVLPGKDGLLHISQIANERVNAVAD 669
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL-LPEADAENP 844
+K G V VK++E +D+G+L+LS +A E DA P
Sbjct: 670 YLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEGDAAAP 707
>gi|395490717|ref|ZP_10422296.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. PAMC
26617]
Length = 804
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 307/756 (40%), Positives = 438/756 (57%), Gaps = 67/756 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVTTQWGGKTLTLETGRVARQADGAVMATLGETVVLCAVTAAKSVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++SAAGR GGFFKRE + E L RLIDRP+RP +GFY+E ++ VLSYDG +
Sbjct: 66 KYSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ +S VP I RVG + ++I+NPT ++++ +LDL++A + DA
Sbjct: 126 PDMLAMVAASAALTISGVPFMGPIGAARVGYIDGEYILNPTVEQIKAGELDLVVAATGDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---- 326
++M+E LSEE+++ AVQ A RE+ N V L E K D ++P
Sbjct: 186 VMMVESEAKELSEEVMLGAVQFAHKACREVCNLVIDLAEQAAK----DPWEMPAQSDLTA 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ ++ G ++ ++ +K R L + K ++
Sbjct: 242 AKDKLRKLVGADIAAAYKVTDKSKRSTMLYEVRAKAREAFADAA---------------- 285
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
P+ + + L +++ ++V R I++
Sbjct: 286 -------------------------PQDQMAAGKLVKKLEGEIV---------RGAILKD 311
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR IRPI + LPRAHGSALFTRGETQ++ TLG K Q ID L +
Sbjct: 312 GTRIDGRTTTQIRPIEAMVHFLPRAHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGL 370
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS ++FPYTIRV S I
Sbjct: 371 SYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTIRVLSDI 430
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F +LSDI G E
Sbjct: 431 TESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDFA------VLSDILGDE 484
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E GIT QMDIK+ GIT +M+ AL QAK+GR HIL EM K
Sbjct: 485 DHLGDMDFKVAGTEAGITTMQMDIKIAGITDEIMRVALAQAKEGRAHILGEMNKALDSTR 544
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS HAP I +++ KI +IG+GGK ++ I+ +TG + +D +D+G +KI++ D +
Sbjct: 545 TELSAHAPRIETLQIDKAKIREVIGTGGKVIREIVAQTGAK-VDIDDEGLIKISSSDTAQ 603
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E + I + VG +Y + ++ ++ +G FV G++GL H+SE+ + + K
Sbjct: 604 IEAAIKWIKGIVEEAEVGKVY-DGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVS 662
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DV+ G V VK++E++ +G++RLS R + E AE
Sbjct: 663 DVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAE 698
>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae SmR1]
gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
seropedicae SmR1]
Length = 712
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/755 (40%), Positives = 449/755 (59%), Gaps = 57/755 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G Q+ +ETG + RQASGAV V+ +T+I +V DFFPL V+Y
Sbjct: 5 VTKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRP+RP +G+ +E Q++ VLS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A++L+ +P + + RVG + ++++NPTT +++ SQLDL++AG++
Sbjct: 125 DPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVAGTET 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E D LSEE+++ AV G D + + + ALV GKP++ T L
Sbjct: 185 AVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNEALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V ++A L + Q K+K R + L ++ +V
Sbjct: 245 RVSQLAEGPLREAYQTKDKQARTEKLKAVTAQV--------------------------- 277
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+E +V + + G + + + +LF ++ +K +R +I+EG R
Sbjct: 278 ----NEALVAEAAANNG---VAADAAEVGSILF----------DLEAKIVRSQILEGEPR 320
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL--ESDDE 507
DGR +RPIS R G+LPR HGSALFTRGETQ+L + TLG + Q+ID L E D
Sbjct: 321 IDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD- 379
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+ PP + GE GR+G P RREIGHG LA+RAL LP+ ++F Y++R+ S IT
Sbjct: 380 --RFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAALPAADEFSYSVRLVSEIT 437
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ + ++F +L+DI G ED
Sbjct: 438 ESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKFA------VLTDILGDED 491
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +GITA QMDIK+ GIT +M+ AL+QAK+GR HIL +M + P
Sbjct: 492 HLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEAVPAGRA 551
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS AP + +K+ PEKI +IG GG ++++ EETG + ID D+G V I + D S+
Sbjct: 552 ELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQ-IDISDEGVVTIASVDASAG 610
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++K I LT VG IY +K + +G V++ PG++GL HIS++++ + D
Sbjct: 611 QEAKRRIEELTASVEVGKIYEGTVLK-LLDFGAIVQVLPGKDGLLHISQIANERVNAVAD 669
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
+K G V VK++E +D+G+L+LS +A E E
Sbjct: 670 YLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEGGE 704
>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
Length = 702
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/751 (41%), Positives = 440/751 (58%), Gaps = 59/751 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K R ++ETG + +QA+GAV G+T++ + + P E DF PL V+Y+ER
Sbjct: 5 KTEIAGRPFIIETGKLAQQANGAVLARYGDTVVLVTATASKEPREGVDFLPLTVDYEERL 64
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
A G+ GGF KREG+ + +L R+IDRPLRP KGF ++ QI++ +LS D + PD
Sbjct: 65 YAVGKIPGGFIKREGKPSEKAILSARVIDRPLRPLFPKGFRNDIQIIATILSVDQGNTPD 124
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A IA+ +S++P + V VGLV FI+NPT ++ E S+L L++AG+ DAIL
Sbjct: 125 VVAINGASIALCISDIPFEGPVGAVSVGLVDGNFIINPTVEQYEKSRLRLVVAGTKDAIL 184
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E D ++EE +I A+ G + +++I + ++ GKPKM + PEL K V
Sbjct: 185 MVEAGADEVTEEEMINAILFGHEEIKKIVKFQEEIIAKVGKPKMEVPVMEIDPELEKAVR 244
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E A +E++K ++I +K R L + E L + ++ Y K++ I E + +L++E
Sbjct: 245 EYARDEILKAIRIYDKQEREAYLQKINEDTL-LHFQDIYPEKEKE--IAEVLYSILKEE- 300
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+R I G R DG
Sbjct: 301 ----------------------------------------------VRNMITYEGIRPDG 314
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R + IRPIS G+LPR HGS LFTRG+TQ L V TLG Q +D LE + E KRF
Sbjct: 315 RKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILDGLELE-ESKRFM 373
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP S GE + P RREIGHG LAERALEP++P + FPYTIR+ S + SNGS
Sbjct: 374 HHYNFPPYSTGETRMLRGPGRREIGHGALAERALEPMIPPEETFPYTIRLVSEVLSSNGS 433
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+SMASVCG LAL DAGVPIK +AG+AMG++ D+ ILSDI G ED GDM
Sbjct: 434 TSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKV------TILSDIQGIEDFLGDM 487
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG GITA QMDIK+ GI ++KKAL+QA++GR +IL +ML P LS +
Sbjct: 488 DFKVAGTSKGITAIQMDIKIKGIDAEILKKALEQAREGRLYILEKMLATISSPRPELSPY 547
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I + P+KI +IG GGK + II ETGV+ ID EDDG + I A + ++ EK+
Sbjct: 548 APRIFTTVIDPDKIREVIGPGGKMINKIIAETGVK-IDIEDDGRIYIAAPNEAAGEKALD 606
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
+I N+T VG +Y ++ I +G FVEI PG+EGL HIS+L+ + K EDVVK+G
Sbjct: 607 MIKNITQDVEVGKVYLG-KVLRITNFGAFVEILPGKEGLVHISKLAKGRVKKVEDVVKIG 665
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
D + VK+ +++ +G++ LS + + E +N
Sbjct: 666 DEILVKVTDIDKQGRINLSHKDVFQEHSPKN 696
>gi|292492790|ref|YP_003528229.1| polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
gi|291581385|gb|ADE15842.1| Polyribonucleotide nucleotidyltransferase [Nitrosococcus halophilus
Nc4]
Length = 711
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 307/747 (41%), Positives = 441/747 (59%), Gaps = 57/747 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ I +GDR +++ETG + RQA+GAV V GET + + E DFFPL VNY
Sbjct: 19 PIRKVIEYGDRSLVLETGCIARQATGAVVVHYGETAVLVTAVGVKEAIEGRDFFPLTVNY 78
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ GGFFKREGR + E L RLIDRPLRP KGF +E Q+++ V+S DG
Sbjct: 79 QERTYAAGKIPGGFFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVISSDGE 138
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ PD ++ A A+ALS +P + IA RVG + ++++NPT +ME S LDL++AG++
Sbjct: 139 NDPDIPSLIGASAALALSGIPFTTPIAAARVGYIDGRYVLNPTLSQMEKSALDLVVAGTE 198
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E L EE+++ +V G ++ + ++ L E GK + + +L
Sbjct: 199 KAVLMVESEARELPEEIMLGSVIFGHQEMQAVIQAIRELAEEAGKAPWDWSTPVEDEDLM 258
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V + L + Q+++K R+ +L+ ++ L +P+
Sbjct: 259 SAVWDCGEARLQEAYQVRSKQDRQASLAEARSFIVERL-----------------VPE-- 299
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
ED +E V++ + + +R +I+ GG
Sbjct: 300 EDPQWSKEQVLEA-----------------------------VSALEKRLVREQILAGGE 330
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI+ GLLPRAHGSALFTRGETQSL TLG ++ AQ ID +E +
Sbjct: 331 RIDGRDTKSVRPINIMTGLLPRAHGSALFTRGETQSLVATTLGTERDAQVIDAIEGERR- 389
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+RF L Y+FPP VGE G +GAP RREIGHG LA+R+L V+P + FPY IRV S ITE
Sbjct: 390 ERFMLHYNFPPYCVGETGFVGAPKRREIGHGRLAKRSLNAVVPDEESFPYVIRVVSEITE 449
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG L+L DAGVPI +AG+AMG++ + D+F +LSDI G ED
Sbjct: 450 SNGSSSMATVCGTSLSLMDAGVPITEPVAGIAMGLIKERDQFA------VLSDILGDEDH 503
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QA++GR HIL +M + P
Sbjct: 504 LGDMDFKVAGTGKGVTALQMDIKIDGITEEIMRTALSQAREGRLHILQKMNEVISAPRQE 563
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S++AP + + K+ PEKI +IG GG ++++ EETG ID DDGTVKI + D + +
Sbjct: 564 MSEYAPRMIVFKINPEKIRDVIGKGGATIRALTEETGT-TIDITDDGTVKIFSSDKADGQ 622
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+++ + + VG IY + + +G FV I PG++GL HIS++S + D
Sbjct: 623 EARRRVEEIVSDVEVGKIYEG-RVSRLMDFGAFVTILPGKDGLLHISQISDERVKNVSDK 681
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ GD++ VK++EV+ +G++RLS +A+
Sbjct: 682 LSEGDIIRVKVLEVDKQGRVRLSIKAI 708
>gi|394994014|ref|ZP_10386750.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 916]
gi|393805093|gb|EJD66476.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. 916]
Length = 707
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VE G + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + KF++NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL + V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSEKVKS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ ++ N V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINEVK---------NAVVAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMNINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K ED+VK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDIVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|150398632|ref|YP_001329099.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium medicae
WSM419]
gi|187611291|sp|A6UF34.1|PNP_SINMW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150030147|gb|ABR62264.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium medicae
WSM419]
Length = 714
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 318/749 (42%), Positives = 448/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPEGYKNDTQVIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA+
Sbjct: 127 DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVAGTQDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E LSEE+++ AV GQ + + + V L E+ K P+ + P+ +
Sbjct: 187 LMVESEAKELSEEIMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFE------PDDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA E+L K +I K R A+ +++ KV
Sbjct: 241 LENAMLSIAEEDLRKAYKITEKAQRYAAVDAVKAKVKE---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ P +E ++ VFK + +K +R I++
Sbjct: 279 ----------------------HFLPEGVEN-PAHTAE-EIASVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI + GLLPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLVTVRPIVAEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 375 K-ENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E G+T+ QMDIK+ GIT +MK AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTEAGVTSLQMDIKIAGITEEIMKVALDQAKHGRVHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ +DDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIDDDGTVKIASASGKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|297569830|ref|YP_003691174.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925745|gb|ADH86555.1| polyribonucleotide nucleotidyltransferase [Desulfurivibrio
alkaliphilus AHT2]
Length = 704
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/748 (42%), Positives = 452/748 (60%), Gaps = 52/748 (6%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I R++ +ETG + +QA G+V VT G++++ + A P E DF PL + YQER
Sbjct: 5 VSIELAGRKLTIETGRLAKQAGGSVLVTYGQSVVLVTATAAREPKENIDFLPLTIEYQER 64
Query: 152 FSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
F A GR G FF+RE GR ++E L CR+IDRPLRP +G+ HETQI++ VLS D +
Sbjct: 65 FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAQGYQHETQIIATVLSADQEND 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ A A+++S+VP IAGVRVG++ ++++NP+ ++ ++S+LDL++AGS+ A
Sbjct: 125 PDLMAMLGASAALSVSQVPFLGPIAGVRVGMIDGQYVLNPSQEQRKNSRLDLIVAGSEKA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+EG D LSEE + + ++++ + K L GKPK+ + L +
Sbjct: 185 VVMVEGGADSLSEEEVKNGIFFAHESLQPLLAMQKELQAAAGKPKLEVKPRQVDEALRQR 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V+E+A E+ +V+ +K R +A + LEEKVL L
Sbjct: 245 VQELAATEMAQVITTVDKQQRGEASAMLEEKVLAAL------------------------ 280
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+GE+ E + + P+ E L KE+ K +R RI + R
Sbjct: 281 ---------EGELAEA-------AGEQLPVKLQEAKGLL--KELKKKMIRERITKERIRI 322
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
D R D +R I++ G+LPR HGS+LFTRGETQ L TLG + QRI++L S K
Sbjct: 323 DNRRLDEVRNITNEVGVLPRVHGSSLFTRGETQVLVSATLGSGEDEQRIESL-SGMSFKP 381
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP VGEV + PSRR+IGHG LAERA++ VLP FPYTIRV S + ESN
Sbjct: 382 FMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAVQAVLPDAESFPYTIRVVSEVLESN 441
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG L+L DAGVP+K ++G+AMG++ + D+ ILSDI G ED G
Sbjct: 442 GSSSMATVCGASLSLMDAGVPMKKPVSGIAMGLIKEGDDIA------ILSDILGDEDHLG 495
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG EDGITA QMDIK+ G++ +M AL QA++GR HIL +M + P + +
Sbjct: 496 DMDFKVAGTEDGITALQMDIKLEGVSREIMSAALNQAREGRLHILGKMKEAIAAPRSDVP 555
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP + + + P+KI +IG GGK +K+I E G++ +D DDG VKI A EK
Sbjct: 556 AHAPKMFSITINPDKIRDLIGPGGKVIKAITTEYGIK-MDVSDDGKVKIFAPTGEIAEKV 614
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K + ++T VG +Y+ ++ + +G FV+I PG +GL HISEL + + K DV+
Sbjct: 615 KEEVLSITAEAEVGKVYKGV-VQKVMDFGAFVQILPGTDGLVHISELEHHRVNKVTDVLN 673
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPE 838
GD V VK++E++ +G++RLSR+ALL E
Sbjct: 674 EGDEVMVKVLEIDPRGKIRLSRKALLNE 701
>gi|260596206|ref|YP_003208777.1| polynucleotide phosphorylase/polyadenylase [Cronobacter turicensis
z3032]
gi|260215383|emb|CBA27411.1| Polyribonucleotide nucleotidyltransferase [Cronobacter turicensis
z3032]
Length = 711
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/744 (41%), Positives = 434/744 (58%), Gaps = 55/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A DFFPL +N
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTIN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRPLRP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKASKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G + + + + LV+ GKP+ + L
Sbjct: 183 ESAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I +K R + +++ V+ L
Sbjct: 243 NARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQ-------------------- 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E EGD E ++ + + +R R++ G
Sbjct: 283 -------------AEQAEGDA-------------LDENELGDILHAIEKNVVRSRVLAGE 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 317 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-R 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ + FPYT+RV S IT
Sbjct: 376 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 436 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENF------VVLSDILGDED 489
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 490 HLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 550 DISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 609 KHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 668 YLQMGQEVPVKVLEVDRQGRVRLS 691
>gi|296840915|ref|ZP_06863772.2| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
gi|296839560|gb|EFH23498.1| polyribonucleotide nucleotidyltransferase [Neisseria polysaccharea
ATCC 43768]
Length = 707
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/744 (42%), Positives = 440/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
D LSEE+++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEADILSEEVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|451941493|ref|YP_007462130.1| polynucleotide phosphorylase/polyadenylase [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
gi|451900880|gb|AGF75342.1| polynucleotide phosphorylase/polyadenylase [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
Length = 711
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/745 (41%), Positives = 450/745 (60%), Gaps = 58/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
++I + R + +ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 IEIEWAGRPLTIETGKIARQADGAVIATYGETIVLATVVSAKSPKPDQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A GR GG+ KRE R ++E L+ RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 SYAVGRIPGGYLKRESRPTENETLISRLIDRPIRPLFADGYKNDTQVIVSVIQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ A+ A+ LS +P IAG RVG ++++NP EM +S+LDL++AG++ A+
Sbjct: 127 DILAMIASSAALTLSGIPFMGPIAGARVGYCNGQYVLNPHIDEMPESKLDLVVAGTESAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV G +++ + + + L E+ K P+ D + +L K
Sbjct: 187 LMVESEAHELPEDIMLGAVMFGHKSLQPVLDAIIKLAEVAAKDPR--DFVPEDLSDLEKA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++A +++ K I +K R A+ +++ ++ N ++
Sbjct: 245 MRKMAEQDIRKAYTITDKQERYAAIDAIKTEIT-----NKFMP----------------- 282
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ DEE FS + VFK++ +K +R I++ +R
Sbjct: 283 -ETDEEC-----------------------KFSTDQLATVFKQLQAKIVRWNILDTQKRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ++ V TLG + Q +D+L + +
Sbjct: 319 DGRNLSTVRPIQSEVSILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-ET 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ FPYTIR S ITESN
Sbjct: 378 FLLHYNFPPFSVGETGRLGSPGRREIGHGKLAWRALHPMLPTKESFPYTIRAVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GITA QMDIK+ GIT +M+ AL+QAK+GR HIL EM K LS
Sbjct: 492 DMDFKVAGTENGITALQMDIKIDGITEEIMEIALEQAKEGRIHILNEMAKALTSARAELS 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ +P I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + D ++E +
Sbjct: 552 EFSPRIEVMNIPVDKIRDVIGSGGKVIREIVEQTGAK-INIEDDGTIKIASADAKTIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY+ +K+ A +G FV R+GL HIS+L+S + K D+VK
Sbjct: 611 KRWIHSIVDEPEVGAIYQGTVVKT-AEFGAFVNFFGSRDGLVHISQLASERVIKTTDIVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
GD V KL+ +++G++RLS + +
Sbjct: 670 EGDKVWGKLMGFDERGKVRLSMKII 694
>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
Length = 702
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 318/750 (42%), Positives = 446/750 (59%), Gaps = 67/750 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ VSV+I GD ++ ETG + +Q SG V + + +VC P+E D+ PL+V
Sbjct: 4 KKVSVRI--GDADLVFETGKIAKQTSGTVYAHYEGSAVIATVCCGKEPNEALDYVPLSVE 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E++ AAG+ GGF KRE R KD E+LV RLIDRP+RP K F E Q++ V+S D
Sbjct: 62 YNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQVVPTVVSSDM 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ AA AV +S++P + IA VR+ +V ++VNPT ++E S LD+++AG+
Sbjct: 122 NNTPDIIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM------LDTIK 321
D I M+EG +SEE++++A+ Q + ++ + L ++ GK K+ +D
Sbjct: 182 RDGITMVEGGAKEVSEEVMLEAIATAQPYITKLCDAQLELKKIAGKEKLPVVTLTVDLSW 241
Query: 322 LPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIV 381
L P V E A + + +K K+ R AL+
Sbjct: 242 LAP------VREYAYPLIKQASFVKGKMERYAALAK------------------------ 271
Query: 382 ETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRR 441
V GEV E + + K L S +F+++ + LR
Sbjct: 272 -----------------VQGEVKEKFQDVIAEDSKRDGQLSS------LFEDLEYEILRA 308
Query: 442 RIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDN 501
I+ G+R+DGR D IRPI+ GLL R HGSALFTRGETQ+LAV TLG Q D
Sbjct: 309 SILNDGKRTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTTLGTASDEQMFDT 368
Query: 502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIR 561
++ + F L Y+FPP SVGE GR+ + RREIGHG LA+RALE ++P+ FPYT+R
Sbjct: 369 IDGEKSFSSFMLHYNFPPYSVGECGRL-STGRREIGHGHLAQRALEAIVPNKESFPYTVR 427
Query: 562 VESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSD 621
V S I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + ++ ++LSD
Sbjct: 428 VVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGADYS---KYVVLSD 484
Query: 622 ITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKC 681
I G ED GDMDFKVAG+ DGITAFQMDIK+ G+T +MKKAL+QAK GR HIL+ M
Sbjct: 485 ILGEEDHLGDMDFKVAGSRDGITAFQMDIKIAGVTPEIMKKALEQAKQGRMHILSIMEGA 544
Query: 682 SPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITA 741
+S++AP I MKV EKI +IG+GGK +K+I ++G E ++ DDGTV I
Sbjct: 545 LSNSREEISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIASQSGAE-VNIADDGTVTIYG 603
Query: 742 KDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNW 801
+D +S + +K ++ ++ P VG IY +K I +G F+EI PG+EGLCHIS+L+
Sbjct: 604 RDNASAQLAKELVKSIVEEPEVGRIYEGT-VKRIMDFGAFIEILPGKEGLCHISKLAKTR 662
Query: 802 LAKAEDVVKVGDLVDVKLIEVNDKGQLRLS 831
+ EDV+KVG +V VKLIE++ + +L LS
Sbjct: 663 VQNVEDVLKVGQVVPVKLIEIDRQNRLNLS 692
>gi|429083698|ref|ZP_19146727.1| Polyribonucleotide nucleotidyltransferase [Cronobacter condimenti
1330]
gi|426547317|emb|CCJ72768.1| Polyribonucleotide nucleotidyltransferase [Cronobacter condimenti
1330]
Length = 719
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/744 (41%), Positives = 436/744 (58%), Gaps = 55/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQEELKSSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G + + + + LV+ GKP+ + L
Sbjct: 183 ESAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I +K R + +++ V++ L
Sbjct: 243 NARVKALAESRLSDAYRITDKQERYSQIDAIKADVISALQ-------------------- 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E EGD E ++ + + +R R++ G
Sbjct: 283 -------------AEQAEGDA-------------LDENELGDILHAIEKNVVRSRVLSGE 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 317 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-R 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ + FPYT+RV S IT
Sbjct: 376 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 436 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENF------VVLSDILGDED 489
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 490 HLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 550 DISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 609 KHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 668 YLQMGQEVPVKVLEVDRQGRVRLS 691
>gi|332187913|ref|ZP_08389646.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
gi|332012074|gb|EGI54146.1| polyribonucleotide nucleotidyltransferase [Sphingomonas sp. S17]
Length = 773
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/761 (40%), Positives = 436/761 (57%), Gaps = 62/761 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE+
Sbjct: 7 VAIEWGGKTLTLETGKVARQADGAVIATLGETVVLCAVTAAKNVKEGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
FS+AGR GGFFKRE + E L+ RLIDRP+RP +GFY+E ++ VLSYDG + P
Sbjct: 67 FSSAGRIPGGFFKRERGATERETLISRLIDRPIRPLFPEGFYNEINCIAQVLSYDGENEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ +S VP I RVG ++ +NP+ E+ + +LDL++A + DA+
Sbjct: 127 DILAMIAASAALTISGVPFMGPIGAARVGYKNGEYQLNPSDSEVLEGELDLVVAATHDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSEE+++ AV A ++ + L E K + + +
Sbjct: 187 MMVESEAKELSEEVMLGAVMFAHKASGQVIEAIIDLAEQAAKDPWELNVGDDQKAVKAEL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G+++ ++ +K R+ AL K +++
Sbjct: 247 KKLVGKDITAAYKLTDKQARQTALGEARAKAKAAMADR---------------------- 284
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
P+ + + L +++ ++V R I++ GRR D
Sbjct: 285 -------------------TPQEQLAAAKLVKKLEAEIV---------RTAILKDGRRID 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI S LPRAHGSALFTRGETQ++A TLG K Q ID L + F
Sbjct: 317 GRSTTQIRPIESEVHFLPRAHGSALFTRGETQTIATTTLGTKDAEQMIDGLNGLS-YQHF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RREIGHG LA RAL PVLPS +FPYTIRV S ITESNG
Sbjct: 376 MLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPSKEEFPYTIRVTSDITESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L+L DAGVP+K ++G+AMG++L+ ++ ILSDI G ED GD
Sbjct: 436 SSSMATVCGGSLSLMDAGVPLKRPVSGIAMGLILEGKDYA------ILSDILGDEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +GIT QMDIK+ GIT + + AL QAKDGR HIL EM K LS
Sbjct: 490 MDFKVAGTSEGITTMQMDIKIAGITKEIFEAALAQAKDGRAHILGEMNKALGETRTELSA 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I M + KI +IG+GGK ++ I+ TG + +D +D+G +KI++ D + +E +
Sbjct: 550 HAPRIETMTIDKSKIRDVIGTGGKVIREIVATTGAK-VDIDDEGVIKISSSDSAQIEAAM 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG IY N ++ ++ +G FV G++GL H+SE+ + + K DV+
Sbjct: 609 NWIKGIVEEAEVGKIY-NGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVSDVLSE 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE---NPPVKLP 849
G V VK++E++ +G++RLS R + E AE N P + P
Sbjct: 668 GQEVKVKVLEIDPRGKVRLSMRVVDQETGAELEDNRPAREP 708
>gi|114329015|ref|YP_746172.1| polynucleotide phosphorylase [Granulibacter bethesdensis CGDNIH1]
gi|122326039|sp|Q0BPK3.1|PNP_GRABC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114317189|gb|ABI63249.1| polyribonucleotide nucleotidyltransferase [Granulibacter
bethesdensis CGDNIH1]
Length = 720
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 317/746 (42%), Positives = 439/746 (58%), Gaps = 68/746 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R +++ETG + RQA GAV G+TI+ + A DFFPL VNYQE+
Sbjct: 8 ELDLGGRTLVLETGKIARQADGAVLARLGDTIVLCTAVGAKSAKAGQDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR +HE LV RLIDRP+RP +GFY+E Q+++ VLS+D + PD
Sbjct: 68 FAAGKIPGGFFKREGRPSEHETLVSRLIDRPIRPLFPEGFYNEVQVIATVLSHDMENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A+ LS +P +A RVGLV F++NPT ++ +S+LDL++AG+ + +L
Sbjct: 128 IVALIGCSAALTLSGIPFFGPVAASRVGLVNGAFVLNPTLEQRAESKLDLVVAGTAEGVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP--PE---L 327
M+E + LSE+ ++ AV+ G + + + + AL E + D LP PE L
Sbjct: 188 MVESEAEELSEDQMLAAVEFGHKGFQPVIDAIIALAEHAAR----DPWTLPEQNPEHVAL 243
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ + E L Q K K R++ +S+ +++++ ET+GI
Sbjct: 244 KQRLNEAGRTLLGNAYQEKVKQLRQEKISAAKKQII------------ETLGI------- 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
TP E K + K++ + +R I++ G
Sbjct: 285 ----------------------------GGTP---EESIAKSMLKDLEADIVRNAILDTG 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI G+LPRAHGSALFTRGETQ+L V TLG Q Q +D L +
Sbjct: 314 IRIDGRDTRTVRPIIGEVGILPRAHGSALFTRGETQALCVATLGTGQDEQVVDALTGEYR 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ PVLP+ + FPYT+RV S IT
Sbjct: 374 -SHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAVHPVLPAKDAFPYTLRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LAL DAGVP+K +AG+AMG++ + F +LSDI G ED
Sbjct: 433 ESNGSSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEDRAFA------VLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E G+T+ QMDIK+ IT +M+ ALQQA+DGR HIL EM K
Sbjct: 487 HLGDMDFKVAGTEQGVTSLQMDIKITSITTEIMRIALQQARDGRMHILGEMAKAITGARG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
S++ AP I ++ V EKI +IG+GGK ++ I+E +G + ID EDDGT+KI + S
Sbjct: 547 SVAATAPRITVINVPKEKIREVIGTGGKVIREIVEFSGAK-IDIEDDGTIKIASTSEEST 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ I + P VG IY N ++ A +G FV R+GL HISEL + K D
Sbjct: 606 QKAIDRIQGIVAEPEVGKIY-NGKVVKTADFGAFVNFLGSRDGLVHISELQQGRVNKTSD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
V+ VGD+V VK++ +D+G+++LS R
Sbjct: 665 VINVGDVVKVKVLGFDDRGKVKLSMR 690
>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
Length = 705
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 443/743 (59%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGDQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSCDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V D +++NPT Q++ S+LDL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYVNDTYVLNPTKQQLHRSKLDLVVAGTAQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP--PELYKHVEE 333
D L E++++ AV G + ++ + + L + P++ D K P EL V++
Sbjct: 191 SEADILPEDVMLGAVVYGHEQMQAVIQAINELADEV-NPEVWDW-KAPETNAELVAKVKD 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I+G + + +I+ K R L DE VE
Sbjct: 249 ISGSLIAEAFKIRQKQARTAKL-------------------DEAWAAVEA---------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+++ E D ++ ++K +FK++ + +R +I+ G R DGR
Sbjct: 280 ---ALINEETDT----------------LAKNEIKGIFKQLEADVVRSQILAGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPEDFNYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG DG+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS+HA
Sbjct: 494 FKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMQAAVSGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ MK+ P+KI +IG GG+ ++SI ET E I+ +DGT+ I A + E +KA
Sbjct: 553 PRLYTMKINPDKIREVIGKGGETIRSITAETNTE-INIAEDGTITIAATTAEAGEAAKAR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V I PG++GL HIS+++ + D ++VG
Sbjct: 612 IETITAEVEVGKVYEGTVVKLLDNNVGAIVTIMPGKDGLVHISQITHERVKNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
V VK +EV+++G++RLS +AL
Sbjct: 672 QTVQVKALEVDERGRVRLSMKAL 694
>gi|284006672|emb|CBA71934.1| polyribonucleotide nucleotidyltransferase [Arsenophonus nasoniae]
Length = 708
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/758 (41%), Positives = 448/758 (59%), Gaps = 61/758 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V +T ++ +V E DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRPLRP +GF++E QI++ V+S +
Sbjct: 63 YQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFFNEIQIIATVVSINP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+++S +P + I RVG + D++++NPT E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSISGIPFNGPIGAARVGYIDDQYVLNPTVDELKSSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
A+LM+E D L+EE ++ AV G + + + + AL K K + EL
Sbjct: 183 SSAVLMVESEADLLTEEQMLGAVVFGHEQQQIVIENINALAAETNKEKWDWQPEAINEEL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPD 386
+ + E+A + L +I K R + +++E V T+L+EN E++ + E I D
Sbjct: 243 HSRIAELAEQRLGDAYRITEKQERYTNVDAIKEDVTNTLLAEN------ESLDVAE-IND 295
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+L + K +R R+++G
Sbjct: 296 ILSG-------------------------------------------LEKKVVRTRVLKG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 EPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDELMGE- 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S I
Sbjct: 372 YTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNQSEFPYTVRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D++ ++LSDI G E
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENDDY------VVLSDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+ +GI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 486 DHLGDMDFKVAGSREGISALQMDIKIEGITREIMQVALNQAKGARLHILTIMEEAINRPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S+ AP IH + + P+KI +IG GG ++++ EETG I+ +DDGTVKI A D S
Sbjct: 546 EEISEFAPRIHTIHINPDKIKDVIGKGGSVIRALTEETGT-TIEIDDDGTVKIAATDSSK 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
E + I ++T VG +Y+ ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 605 AEAAIRRIEDITAEVEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIAEKRVEKVT 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAEN 843
D +++G V VK++E++ +G++RLS + A+ E AE
Sbjct: 664 DYLQLGQEVPVKVLEIDRQGRIRLSIKEAVSAEKPAET 701
>gi|429091564|ref|ZP_19154232.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
1210]
gi|426743894|emb|CCJ80345.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
1210]
Length = 750
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 306/744 (41%), Positives = 435/744 (58%), Gaps = 55/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A DFFPL +N
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTIN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRPLRP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTQEELKSSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G + + + + LV+ GKP+ + L
Sbjct: 183 ESAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANETL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ +A L +I +K R + +++ V+ L
Sbjct: 243 NARVKALAESRLSDAYRITDKQERYSQIDAIKADVIAALQ-------------------- 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E EGD E ++ + + +R R++ G
Sbjct: 283 -------------AEQAEGDA-------------LDENELGDILHAIEKNVVRSRVLAGE 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 317 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-R 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ + FPYT+RV S IT
Sbjct: 376 TDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 436 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENF------VVLSDILGDED 489
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 490 HLGDMDFKVAGSREGITALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 550 DISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 609 KHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 668 YLQMGQEVPVKVLEVDRQGRVRLS 691
>gi|149204437|ref|ZP_01881404.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
gi|149142322|gb|EDM30369.1| polynucleotide phosphorylase/polyadenylase [Roseovarius sp. TM1035]
Length = 713
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/751 (42%), Positives = 439/751 (58%), Gaps = 73/751 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQE++
Sbjct: 9 MQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF HET ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ A A+ +S P IAG RVG V ++I+NP +M D +LDL++AG+
Sbjct: 129 VALIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHDLRNNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E L+EE ++ AV + ++ + + + +L E C K + PP+
Sbjct: 189 KDAVMMVESEAYELTEEEMLGAVTFAHEQLKPVCDLIISLAEDCAK----EPFNFTPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ E++ I++K R A+S+ E + LS+
Sbjct: 245 SDLYAAVKAAGEEQMRAAFAIRDKQERTHAISAAREAIKAKLSD---------------- 288
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+ LED++ + FK++ S LR +V
Sbjct: 289 -EQLEDQN----------------------------------LGSAFKKLESTVLRGDVV 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR D IRPI GLLPR HGS+LFTRGETQ+L V TLG Q ID L
Sbjct: 314 KNGNRIDGRRLDEIRPIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+GAP RREIGHG LA RAL+ VLP DFPYT+R+ S
Sbjct: 374 NFK-SNFLLHYNFPPYSVGEAGRVGAPGRREIGHGKLAWRALQAVLPPATDFPYTVRLVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K S+AGVAMG+VL+ DG+ ILSDI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEE-----DGSFAILSDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG DGIT+ QMDIKV GIT +MKKAL+QAK GR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHILGEMNKALSG 547
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D D+G +KI + +
Sbjct: 548 AAE-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKIASPNG 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
S++K+ +I ++ P G +Y + ++ + +G FV R+GL H+S++ + L
Sbjct: 606 ESIKKAYDMIWSIVAEPEEGKVY-DGKVVKLVDFGAFVNFFGKRDGLVHVSQIENRRLNH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DV+K G V VKL+ +D+G++RLS + +
Sbjct: 665 PSDVLKEGQDVKVKLLGFDDRGKVRLSMKVV 695
>gi|427427499|ref|ZP_18917543.1| Polyribonucleotide nucleotidyltransferase [Caenispirillum salinarum
AK4]
gi|425883425|gb|EKV32101.1| Polyribonucleotide nucleotidyltransferase [Caenispirillum salinarum
AK4]
Length = 708
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/746 (41%), Positives = 439/746 (58%), Gaps = 67/746 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R++++ETG + RQA GAV VT G+T + + + S DFFPL VNYQE+
Sbjct: 10 EIDWGGRKLVLETGKVARQADGAVMVTYGDTTVLATAVGSKTKSN-FDFFPLTVNYQEKT 68
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + E L RLIDRP+RP +G+ ETQ++ VLS+D + PD
Sbjct: 69 FAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAEGYRSETQVVCTVLSHDMENDPD 128
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A A+ +S +P I RVG V ++++NPT+ +M+ + LDL++AG+ +L
Sbjct: 129 IVAMIGASAALTISGLPFLGPIGAARVGYVDGEYVLNPTSDQMKQTGLDLVVAGTTQGVL 188
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEM---CGKPKMLDTIKLPPPELYK 329
M+E + LSE++++ AV G + + + + A++EM C + P + K
Sbjct: 189 MVESQANELSEDVMLGAVNFGHEQFQPV---IAAIIEMARNCAREPREIAPAAPEVAIVK 245
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
E ++ + +I NK R+ ALS++ + + L EN
Sbjct: 246 DKAEAIRGQVAEAYKIVNKTERQDALSAIRQAFVESLGEN-------------------- 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ E+ V G+V K + S+ +RR ++E G+R
Sbjct: 286 ----EAEIAVAGKV---------------------------LKGLESEVMRRSVLETGKR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +R I S G LPRAHGSALFTRGETQ++ +TLG Q Q ID LE + +
Sbjct: 315 IDGRDTKTVRAIESEVGFLPRAHGSALFTRGETQAMVTVTLGTGQDEQIIDALEGEYR-E 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGE GR+G+P RREIGHG LA RA++P+LP DFPYT+RV S ITES
Sbjct: 374 HFLLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIKPLLPKKEDFPYTMRVVSEITES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LA+ D GVP+ +AG+AMG++ + D F +LSDI G ED
Sbjct: 434 NGSSSMATVCGTSLAMMDGGVPLPRPVAGIAMGLIKEDDGFA------VLSDILGDEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E G+T+ QMDIK+ IT +M+ AL+QA+DGR HIL EM +
Sbjct: 488 GDMDFKVAGTETGVTSLQMDIKITSITKEIMEVALRQARDGRLHILGEMANALTGAREGV 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
+ +AP I + + P KI +IGSGGK ++ I E+TG + ID +DDGT+KI + D + +K
Sbjct: 548 AANAPRITTITINPSKIRDVIGSGGKVIREITEQTGTK-IDIDDDGTIKIASADPEATDK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ A I + P VG IY +K I +G FV R+GL HISEL+ N + DVV
Sbjct: 607 AVAWIKGIVAEPEVGVIYTGKVVK-IMDFGAFVNFLGSRDGLVHISELAQNRVKNVGDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
VGD+V VK I +D+G+++LS + +
Sbjct: 666 SVGDMVKVKCIGFDDRGKVKLSMKQV 691
>gi|422322942|ref|ZP_16403982.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans C54]
gi|317402106|gb|EFV82699.1| polyribonucleotide nucleotidyltransferase [Achromobacter
xylosoxidans C54]
Length = 718
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 322/753 (42%), Positives = 445/753 (59%), Gaps = 67/753 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G +++ETG + RQASGAV V+ +T++ +V + FFPL V+Y
Sbjct: 5 VTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRPLRP + FY+E Q++ LS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P + I RVG + ++ +NPT +++ S+LDL++AG+++
Sbjct: 125 DPDIPAMIGASAALAISGIPFNGPIGAARVGYIDGQYAINPTASQLKSSKLDLVVAGTEN 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE--- 326
A+LM+E D LSEE+++ V G + ++ + N + LV+ GKP D PP +
Sbjct: 185 AVLMVESEADQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKP---DWDWQPPAKDEA 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPR----RKALSSLEEKVLTILSENGYVSKDETVGIVE 382
L V A E L QI+ K R R+ + + K+ +E G E
Sbjct: 242 LIAAVTSAAQEGLNAAYQIREKQARTTKLREVYADVSAKLNAAAAEKG-----------E 290
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
PD V VD +LFS + S +R +
Sbjct: 291 PAPD---------AVTVDN------------------ILFS----------LESAIVRGQ 313
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I+ G R DGR +RPIS R G+LPRAHGSALFTRGETQ+L V TLG KQ Q ID L
Sbjct: 314 ILNGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDAL 373
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ RF L Y+ PP + GE GRIG P RREIGHG LA+RAL P+LP+ DF YTIR+
Sbjct: 374 MGEYR-DRFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRALIPLLPAPEDFQYTIRI 432
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCGG LA+ DAGVP+K +AGVAMG++LD +F +L+DI
Sbjct: 433 VSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFA------VLTDI 486
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG E+G+TA QMDIK+ GIT +M+ AL QA++GR HIL +M +
Sbjct: 487 LGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKEAL 546
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
LS AP + +K+ PEKI +IG GG ++++ EETG + ID DDGT+ I +
Sbjct: 547 DGSRGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQ-IDISDDGTIVIASV 605
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D + ++++ I LT VG +Y ++ + +G V++ PGR+GL HISE+++ +
Sbjct: 606 DEAQAKEAQRRIVELTADVEVGQVYDGSVLR-LLDFGAIVQVLPGRDGLLHISEIANYRI 664
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
A DV+KVG V VK+IE +DKG+LRLS +A+
Sbjct: 665 ANINDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697
>gi|451346958|ref|YP_007445589.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens IT-45]
gi|449850716|gb|AGF27708.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens IT-45]
Length = 707
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/743 (42%), Positives = 446/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VE G + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + KF++NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSAKVKN 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ ++ N V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINEVK---------NAVVAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILDSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|154244245|ref|YP_001415203.1| polynucleotide phosphorylase/polyadenylase [Xanthobacter
autotrophicus Py2]
gi|226704833|sp|A7IC03.1|PNP_XANP2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154158330|gb|ABS65546.1| Polyribonucleotide nucleotidyltransferase [Xanthobacter
autotrophicus Py2]
Length = 730
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/744 (42%), Positives = 449/744 (60%), Gaps = 57/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ +G R + +ETG M RQA G+V T G+T + +V A P DFFPL VNYQE+
Sbjct: 8 ELDWGGRTLTLETGKMARQADGSVLATYGDTKVLATVVSAREPKPGQDFFPLTVNYQEKT 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP +G+ +TQ++ VL++D + PD
Sbjct: 68 YAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKCDTQVVITVLAHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ AA A+ LS VP + RVG + +++++NPT E+++S L+L++AG+ DA+L
Sbjct: 128 VVAMVAASAALTLSGVPFMGPVGAARVGFIDNEYVLNPTVDEVKESALELVVAGTGDAVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E L EE+++ AV G + + + L E K P+ + E+ V
Sbjct: 188 MVESEAKELPEEIMLGAVMFGHRHFQPVIEAIIKLAEKAAKEPRNFQPADVS--EVESKV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
EIA +L +IK K R A+ + + KV
Sbjct: 246 REIAEADLRAAYKIKQKQDRYAAVGAAKSKVKKYY------------------------- 280
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EE+ +DG ++ T + S+V K + +K +R I++ G R D
Sbjct: 281 ---EELALDG------------TKVPTAQVVSDV-----LKALEAKIVRWNILDDGIRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S G+LPRAHGSALFTRGETQ+L V TLG + Q ID+LE + + F
Sbjct: 321 GRDVYTVRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTYK-EHF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ ++FPYT+RV S I ESNG
Sbjct: 380 LLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAKHEFPYTLRVVSEILESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP++ +AG+AMG++L+ ++F +LSDI G ED GD
Sbjct: 440 SSSMATVCGTSLALMDAGVPLRRPVAGIAMGLILEGEKFA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+T+ QMDIK+ GIT +MK AL QAKDGR HIL EM K L +
Sbjct: 494 MDFKVAGTEQGVTSLQMDIKIAGITEEIMKVALTQAKDGRVHILGEMAKALTTARAELGE 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +MK+ +KI +IGSGGK ++ I+E+TG + I+ EDDGT+KI + +++ +
Sbjct: 554 HAPRIEVMKIAVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTIKIASASGDAIKAAI 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY +K + +G FV ++GL H+S++++ +AK DVVK
Sbjct: 613 NWIKSIASEPEVGQIYEGTVVK-VVDFGAFVNFFGSKDGLVHVSQMANERVAKPSDVVKE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +++G+ RLS + +
Sbjct: 672 GDKVKVKLMGFDERGKTRLSMKVV 695
>gi|374365461|ref|ZP_09623551.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
gi|373103034|gb|EHP44065.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
Length = 730
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 320/752 (42%), Positives = 440/752 (58%), Gaps = 60/752 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQA GAV V +T++ +V A P DFFPL V+Y E+ AA
Sbjct: 13 WGQHKVRLETGEIARQAGGAVIVDIEDTVVLATVVAAKSPKAGQDFFPLTVDYIEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR ++E L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEVPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P S + RVG ++++NPT ++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGIPFSGPVGAARVGYKDGQYLLNPTRSQIAASELDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
LSEE+++ AV G + ++ N + LV GKP+ D P E L V EI
Sbjct: 193 SEARQLSEEVMLGAVVYGHEQMQTAINAIHDLVRDGGKPEW-DWTAAPKNEALIAKVGEI 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A L V Q++ K R + L + V L+E G
Sbjct: 252 ALPLLQDVYQLRQKSARSQKLKEVYATVAAKLAEAGV----------------------- 288
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
E D +V+V V ++ +K +R +++ G R DGR
Sbjct: 289 ----------EAD----------------KVEVGNVLFDIEAKIVRSQVLSGEPRIDGRD 322
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R +LPRAHGSA+FTRGETQ+L V TLG K Q ID L + RF L
Sbjct: 323 TRTVRPIEIRSSVLPRAHGSAIFTRGETQALVVATLGTKGDEQIIDALAGEYR-DRFMLH 381
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL PVLP D++F YTIR+ S ITESNGSSS
Sbjct: 382 YNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITESNGSSS 441
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVPIK +AGVAMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 442 MASVCGGCLALMDAGVPIKAHVAGVAMGLILEGNKFA------VLTDILGDEDHLGDMDF 495
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG ++GITA QMDIKV GIT +M+ AL QAK+GR HIL +M LS+HAP
Sbjct: 496 KVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQDAMGHARTELSEHAP 555
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ MK+ P+KI +IG GG ++++ +ETG ID ++DGT+ I + + ++K I
Sbjct: 556 RMITMKIHPDKIREVIGKGGSTIQALTKETGT-TIDIQEDGTITIASTSTDGMAEAKRRI 614
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
+T VG IY +K + +G V I PG++GL HISE+ + + +D +K G
Sbjct: 615 EGITAEAEVGKIYAGTVLK-LLDFGAIVNILPGKDGLLHISEIVNERVKDIKDWLKEGQH 673
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADAENPPV 846
V VKLI+ ++KG+LRLS +A L E P+
Sbjct: 674 VRVKLIQADEKGRLRLSLKAALAEEGGSISPI 705
>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
Length = 705
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/744 (42%), Positives = 440/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ S+LDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+ D L E+
Sbjct: 249 IAGEAIKEAFKIRQKQARSAKL-------------------DEAWNAVK---DALITEET 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK + + +R +I+EG R DGR
Sbjct: 287 DT--------------------------LAANEIKGIFKHLEADVVRTQILEGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAKD R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIRDVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEAITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|94269020|ref|ZP_01291349.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
gi|93451373|gb|EAT02233.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
Length = 703
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/751 (41%), Positives = 453/751 (60%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
+ + G R + +ETG + +QASG+V VT G++++ + A DF PL + YQER
Sbjct: 5 LSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQER 64
Query: 152 FSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
F A GR G FF+RE GR ++E L CR+IDRPLRP G+ +ETQ+++ VLS D +
Sbjct: 65 FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEND 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ A A+ +S +P + +AGVRVG++ ++++NP + +S+LDL++AG+ A
Sbjct: 125 PELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSKA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP---EL 327
++M+EG D L E+ + + + +A++ + + + L + G+PKM PPP +L
Sbjct: 185 VVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKEVGRPKMEVA---PPPVDEDL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
VE +A E+ +V+ +K R +A +L+E+VL L + +V P
Sbjct: 242 RTRVESLAAAEMTEVISTADKKARGEAAHNLQERVLATLEAD----------LVANTP-- 289
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E D+ K K K + K++ K +R+RIV+
Sbjct: 290 -----------------EADLESKLKEAKG------------LLKDLQKKMMRQRIVKEH 320
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R D R D +RPI+S LPR HGSALFTRGETQ L TLG QRI++L S
Sbjct: 321 QRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESL-SGMN 379
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
K F L Y+FPP VGEV + PSRR+IGHG LAERA++ VLP + FPYTIRV S +
Sbjct: 380 FKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAIQAVLPDADSFPYTIRVVSEVL 439
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG L+L DAGVP+K +++G+AMG++ + +E ILSDI G ED
Sbjct: 440 ESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVA------ILSDILGDED 493
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG ++GITA QMDIKV G++ +M +AL QAKD R HIL +M + P
Sbjct: 494 HLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQALEAPRR 553
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ +HAP + + + P+KI +IG GGK ++ I + GV+ ID EDDG VKI A +
Sbjct: 554 EVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVK-IDVEDDGKVKIFAPNGEVA 612
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ + ++ +LT +G IY ++ I +G FV+I PG +GL HISEL + + K D
Sbjct: 613 DQVRELVLSLTAEAEIGKIYTGT-VQKIMDFGAFVQILPGTDGLVHISELENRRVEKVTD 671
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
V+K GD V VK+++++ +G++RLSR+A+L E
Sbjct: 672 VLKEGDEVRVKVLDIDGRGKIRLSRKAVLAE 702
>gi|254477352|ref|ZP_05090738.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
gi|214031595|gb|EEB72430.1| 3' exoribonuclease family, domain 2, protein [Ruegeria sp. R11]
Length = 705
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 313/748 (41%), Positives = 440/748 (58%), Gaps = 67/748 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQE++
Sbjct: 1 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKEQKPGQDFFPLTVHYQEKYY 60
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S P IAG RVG ++++NPT +M+D +LDL++AG+
Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFTDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A++M+E L+E ++ AV + ++ + + + +L E K + D EL
Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEEAAK-EPFDFQAPDYSEL 239
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
Y+ V+ E+ I +K R A+++ E + LSE +
Sbjct: 240 YEAVKAAGETEMRAAFAITDKQERTAAVAAARETIKAALSE-----------------EQ 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
LED ++ K++ + LR +V+GG
Sbjct: 283 LED----------------------------------ANLGSAMKKLEAGILRGDVVKGG 308
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR +R I S G+LPR HGSALFTRGETQ+LAV TLG Q ID L + +
Sbjct: 309 KRIDGRDTTTVRQIVSETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFK 368
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S IT
Sbjct: 369 -SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSEIT 427
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ ILSDI G ED
Sbjct: 428 ESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGSYAILSDILGDED 482
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E+GIT+ QMDIKV GIT +M+KAL QAKDGR HIL EM K +N
Sbjct: 483 HLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMSKAL-SETN 541
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + D +++
Sbjct: 542 AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASADGTAI 600
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P G +Y +K I +G FV R+GL H+S++ + L D
Sbjct: 601 QKAYDMIHSIVAEPEEGAVYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 659
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G V VKL+ +D+G++RLS + +
Sbjct: 660 VLKEGQEVKVKLLGFDDRGKVRLSMKVV 687
>gi|197117696|ref|YP_002138123.1| polynucleotide phosphorylase/polyadenylase [Geobacter bemidjiensis
Bem]
gi|257096691|sp|B5EI63.1|PNP_GEOBB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|197087056|gb|ACH38327.1| polyribonucleotide nucleotidyltransferase [Geobacter bemidjiensis
Bem]
Length = 696
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 317/742 (42%), Positives = 434/742 (58%), Gaps = 67/742 (9%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
+ I +ETG + +QASGAV + G+T++ + E FFPL VNYQE+ A GR
Sbjct: 12 KTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVNYQEKAYAGGRI 71
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
G FFKREGR D+E L CRLIDRP+RP + F ++TQI++ V+S D + P L++
Sbjct: 72 PGSFFKREGRPSDNETLTCRLIDRPIRPLFPENFLNDTQIMATVVSADKDNDPGILSMIG 131
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A+ +S+VP + IAGV+VG V +FI NPT ++ E S L++++A S DAILM+EG
Sbjct: 132 ASAALMVSDVPFAGPIAGVKVGRVDGQFIANPTAEQEEKSDLEIVIAASQDAILMVEGSA 191
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELYKHVEEI 334
+SE+ L++A+ G AV+ + L + G K ++P P L V +
Sbjct: 192 CEVSEDDLLEAIFFGHKAVQPVLAAQLELAKKVGTSKR----EIPAPVVNEALKARVSAL 247
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A E + + ++IK K+ R A+ ++ DETV +
Sbjct: 248 AKEGMKQAVRIKTKVERHLAIDAI---------------ADETVAAL------------- 279
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
S SE ++K +++ +R I++ G+R DGR
Sbjct: 280 ----------------------SAEFEGSEKEIKGFIEDLEYDLVREHIIKDGQRIDGRD 317
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
IR IS+ LLPRAHGSALFTRGETQS+ TLG QRID+L D K+F L
Sbjct: 318 TKTIRAISTEVSLLPRAHGSALFTRGETQSIVAATLGTSVDEQRIDSLYGDSR-KKFMLH 376
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGE AP RREIGHG LAERAL+ VLP +DFPYTIR+ S ITESNGSSS
Sbjct: 377 YNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPYTIRIVSDITESNGSSS 436
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCGG L++ DAG+PIK +AG+AMG++ + D+F ILSDI G ED GDMDF
Sbjct: 437 MATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFA------ILSDILGDEDHLGDMDF 490
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG +G+TA QMDIK+GG+T +M AL QAK GR HIL EM K LS AP
Sbjct: 491 KVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRIHILGEMAKTIGASRGDLSAFAP 550
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I + VK +KI +IGSGGK ++S+ E TGV +ID +D G + I + + + + + +I
Sbjct: 551 RITTIWVKVDKIRDVIGSGGKNIRSVTEATGV-SIDIDDTGKINIASTNKEACDLAIKMI 609
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
NLT G +Y +K I +G FVEI PG +GL H+SEL + + D++K GD
Sbjct: 610 RNLTAEAEEGKLYMGT-VKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVSDILKEGDK 668
Query: 815 VDVKLIEVNDKGQLRLSRRALL 836
V VK I ++ +G+++LSR+ L
Sbjct: 669 VLVKCIGIDKQGKIKLSRKEAL 690
>gi|375362314|ref|YP_005130353.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731659|ref|ZP_16170782.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|371568308|emb|CCF05158.1| polyribonucleotide nucleotidyltransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073872|gb|EKE46862.1| polynucleotide phosphorylase/polyadenylase [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 707
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/743 (42%), Positives = 446/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VE G + +QA+GAV V G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + KF++NPT ++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GK K + EL V+
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDEELSAKVKS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +L+ +Q+ K R A++ ++ N V+K E+E+
Sbjct: 249 LAEPDLLSAIQVHEKHAREDAINEVK---------NAVVAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE+ + K S KLV EV RR I E R DGR
Sbjct: 287 DEDTI-----------------KKVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+P++ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ G++ ++++ALQQAK GR IL ML LS++A
Sbjct: 494 FKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILDSMLSTLGESRKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D SS +K+K I
Sbjct: 554 PKILTMTINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESSNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL 694
>gi|349610167|ref|ZP_08889525.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. GT4A_CT1]
gi|348610468|gb|EGY60158.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. GT4A_CT1]
Length = 706
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 439/743 (59%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ S+LDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+ D L E+
Sbjct: 249 IAGEAIKEAFKIRQKQARSAKL-------------------DEAWNAVK---DALITEET 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK + + +R +I+EG R DGR
Sbjct: 287 D--------------------------TLAANEIKGIFKHLEADVVRTQILEGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAKD R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
+V+VK +EV+D+G++RLS +AL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKAL 694
>gi|403057056|ref|YP_006645273.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402804382|gb|AFR02020.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 706
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 438/748 (58%), Gaps = 66/748 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P S I RVG + D++++NPT E+++S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYLNDQYVLNPTMDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E D LSE+ ++ AV G + + + + ALV GKPK + PE
Sbjct: 183 EGAVLMVESEADILSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKW----EWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R + ++ V+ L ++DET
Sbjct: 239 NVSLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQ-----AEDET------ 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ D++ + V +R R+
Sbjct: 288 --------------------------------------LNAGDIQEILGNVEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLS 831
K D +++G V VK++EV+ +G++RLS
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|419796729|ref|ZP_14322252.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca VK64]
gi|385699197|gb|EIG29511.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca VK64]
Length = 706
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 439/743 (59%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ S+LDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPEANEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+ D L E+
Sbjct: 249 IAGEAIKEAFKIRQKQARSAKL-------------------DEAWNAVK---DALITEET 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK + + +R +I+EG R DGR
Sbjct: 287 D--------------------------TLAANEIKGIFKHLEADVVRTQILEGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAKD R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
+V+VK +EV+D+G++RLS +AL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKAL 694
>gi|407777927|ref|ZP_11125194.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor
pacificus pht-3B]
gi|407300323|gb|EKF19448.1| polynucleotide phosphorylase/polyadenylase [Nitratireductor
pacificus pht-3B]
Length = 717
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 318/752 (42%), Positives = 446/752 (59%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKIARQADGAVLATYGETVVLATVVSAKEPKPGFDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GGFFKREGR + E L RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFVDGYKNDTQVVLTVLQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ A A+ LS VP I RVG +G ++I+NP EME+S+LDL++AG+ DA+
Sbjct: 127 DIVAMVGASAALTLSGVPFMGPIGAARVGYIGGEYILNPHLDEMEESKLDLVVAGTGDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L+E++++ AV G + + + + L E K P+ D EL
Sbjct: 187 LMVESEAQELAEDVMLGAVMFGHKGFQPVIDAIIKLAEAAAKEPR--DFTSPDYSELEGA 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ ++ +L +I +K R A+ + + KV E +P E
Sbjct: 245 MLKVVEADLRDAYKITDKQQRYDAVDAAKAKVKA-----------------EFLP---EG 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E+E + ++ V VFK + +K +R I++ R
Sbjct: 285 EEEQK--------------------------WTSEQVNAVFKTLQAKIVRWNILDTSLRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I S G+LPR HGSA+FTRGETQ+L V TLG + Q ID L + +
Sbjct: 319 DGRDLSTVRSIVSEVGVLPRTHGSAVFTRGETQALVVATLGTGEDEQFIDALTGTYK-EA 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ + FPYT+RV S +TESN
Sbjct: 378 FLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAADQFPYTLRVVSEVTESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEEERFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG + GIT+ QMDIK+ GIT +M+ AL QAK GR HIL EM K L
Sbjct: 492 DMDFKVAGTDAGITSLQMDIKIHGITEEIMQIALDQAKGGRLHILGEMGKALSESRGELG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +
Sbjct: 552 EFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++T P VG+IY +K+ A +G FV ++GL HIS+L+S + K DVVK
Sbjct: 611 KKWIHSITAEPEVGEIYEGTVVKT-ADFGAFVNFFGPKDGLVHISQLASERVQKTTDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VKL+ +++G++RLS + + E E
Sbjct: 670 EGDKVFVKLMGFDERGKVRLSMKVVDQETGQE 701
>gi|406939725|gb|EKD72689.1| hypothetical protein ACD_45C00613G0015 [uncultured bacterium]
Length = 697
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/739 (41%), Positives = 445/739 (60%), Gaps = 57/739 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD + +ETG + RQA+ AV V +T++ +V SE DFFPL VNYQER AA
Sbjct: 10 YGDHTVTLETGVIARQATAAVLVGMDDTMVLVTVVGQASTSEDRDFFPLTVNYQERTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKRE + + E L RLIDRP+RP KGF E Q+++ V+S + D A
Sbjct: 70 GRIPGGYFKREAKPSEKETLTSRLIDRPVRPLFPKGFNFEVQVIATVVSMNPEIDSDIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ALS +P + RVG + +I+NPT ++E S+LD+++AG++ A+LM+E
Sbjct: 130 MLGASAALALSGMPFMGPLGAARVGYTDNAYILNPTLSQLETSELDMVVAGTEKAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
L E ++ AV ++ + +K LV+ GKP L P + K V E+
Sbjct: 190 SEAKELPEPAMLGAVMFAHQHMQTAISAIKELVKEAGKPAWDWEAPLVNPVVEKRVAELV 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPDLLEDEDED 394
ELVK QI++K R+ A++ + E++L +L+EN + ED
Sbjct: 250 EAELVKAYQIRDKQERQDAIAEIRERLLEKMLAEN--------------------TDKED 289
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
E ++++ D K VFK + S+ +R +I+EG R DGR
Sbjct: 290 EALLME-------------------------DTKYVFKNLESRIVRGQILEGKPRIDGRD 324
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPIS + G+LPR HGSALFTRGETQ+L V TLG ++ AQ ID LE + + + F L
Sbjct: 325 TKTVRPISVQVGVLPRTHGSALFTRGETQALVVATLGTERDAQTIDALEGEHK-ETFMLH 383
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGEVG +G+P RREIGHG LA+R ++ VLP +FPY +RV S ITESNGSSS
Sbjct: 384 YNFPPFSVGEVGFVGSPKRREIGHGNLAKRGVKAVLP--KEFPYVLRVVSEITESNGSSS 441
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCG LAL DAGVPI+ +AG+AMG+V + + F +LSDI G ED GDMDF
Sbjct: 442 MATVCGSSLALMDAGVPIRAHVAGIAMGLVKEGNRFA------VLSDILGDEDHLGDMDF 495
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG G+TA QMDIK+ GIT +M++AL+QA +GR HIL M + +S +AP
Sbjct: 496 KVAGTAQGVTALQMDIKIDGITEEIMRQALEQAHEGRIHILEIMNRAIQQARAEMSVYAP 555
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I M++ +KI +IG GG ++S+ EETG +D DDG +++ A DL++ E++ I
Sbjct: 556 RILNMRIPTDKIRDVIGKGGVTIRSLTEETGT-IVDISDDGEIRVAAADLAACEEAIRRI 614
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
LT VG++Y +K +A +G FV I PG++GL HIS+++ + K D + G +
Sbjct: 615 ERLTADVAVGEVYEGTVVK-LADFGAFVSILPGKQGLVHISQIAKERVEKVTDKLAEGQV 673
Query: 815 VDVKLIEVNDKGQLRLSRR 833
V VK++E++ +G++RLS +
Sbjct: 674 VRVKVLEIDKQGRIRLSMK 692
>gi|357632296|ref|ZP_09130174.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
FW1012B]
gi|357580850|gb|EHJ46183.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp.
FW1012B]
Length = 762
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 324/752 (43%), Positives = 441/752 (58%), Gaps = 59/752 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ ++ G I++ETG + QA GAV + G T++ + C + +E FFPL V+Y
Sbjct: 7 PIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTACTQAL-AEEKGFFPLVVDY 65
Query: 149 QERFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
QE AAGR G +F+RE GR + EVLVCRLIDRP RP KGF E QI++ VLS DG
Sbjct: 66 QEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADG 125
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME-DSQLDLLLAG 266
PD LA+TAA A+ +S++P IAG RVG + +F++NPT + + L+L A
Sbjct: 126 QVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTFAA 185
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
S DA++M+EG F+SE++L A++ G AV+ + + + + E GKPK+ T P E
Sbjct: 186 SRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPNEE 245
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V + A L + IK+K+PRR A ++++ V+ +VE PD
Sbjct: 246 LEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMA--------------AVVEAFPD 291
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+ + M EV + + K LR I E
Sbjct: 292 ----------------------------QPTYKMKAGEV-----LEAMEKKLLRALIKET 318
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR +RPI + G+LPR HGS LF RGET++L V TLG Q+I+ L + +
Sbjct: 319 GIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETL-NGE 377
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
KRF L Y+FPP VGEV + PSRR+IGHG LAER++ PVLP +FP+T+RV S +
Sbjct: 378 TYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPGPEEFPFTMRVVSQV 437
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
ESNGSSSMASVCG LAL DAGVPIK +AG+AMG++ + D+F LIL+DI G E
Sbjct: 438 MESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDDF------LILTDILGDE 491
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DA GDMDFKVAG DGIT QMDIK+ GI VM++AL QAK+ R HIL M + P
Sbjct: 492 DAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHILGRMAEVLAAPR 551
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS AP + ++ + PEKI +IG GGK +K+I ETG +ID ED G + I A L S
Sbjct: 552 PELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGA-SIDIEDTGKISIFAPTLES 610
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+EK++A + VG Y+ ++K I GV VEI PG EGL H+S+L +
Sbjct: 611 MEKARARVEYYDQHADVGANYKG-KVKKIIDCGVIVEILPGLEGLVHVSQLDIERVESPF 669
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
DVVK+G ++VK++E G++RLSR+A++ E
Sbjct: 670 DVVKMGQELEVKVLEQEPSGRIRLSRKAVMNE 701
>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
Length = 706
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/743 (42%), Positives = 439/743 (59%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ S+LDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+ D L E+
Sbjct: 249 IAGEAIKEAFKIRQKQARSAKL-------------------DEAWNAVK---DALITEET 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK + + +R +I+EG R DGR
Sbjct: 287 D--------------------------TLAANEIKGIFKHLEADVVRTQILEGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAKD R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
+V+VK +EV+D+G++RLS +AL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKAL 694
>gi|183600370|ref|ZP_02961863.1| hypothetical protein PROSTU_03936 [Providencia stuartii ATCC 25827]
gi|188020161|gb|EDU58201.1| polyribonucleotide nucleotidyltransferase [Providencia stuartii
ATCC 25827]
Length = 722
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/747 (41%), Positives = 440/747 (58%), Gaps = 62/747 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG + RQA+ AV V +T ++ + E DFFPL VNY
Sbjct: 19 PIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNY 78
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L+ RLIDRPLRP +GF +E QI++ V+S +
Sbjct: 79 QERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQ 138
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ALS VP + I RVG + D++++NPT E++ S+LDL++AG++
Sbjct: 139 VNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVAGTE 198
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSEE ++ AV G D + + E+ LV+ GK K + L
Sbjct: 199 SAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQALR 258
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V +A + +I K R + + ++E+V + V++DE V + E + D+L
Sbjct: 259 DKVAALAESRMGDAYRITEKQERYEQVDLIKEEVTAAI-----VAEDENVDVAE-VADIL 312
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+ + + +R R++ G
Sbjct: 313 AN-------------------------------------------LEKQVVRSRVIRGEP 329
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + R +LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 330 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGE-YT 388
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P DFPYT+RV S ITE
Sbjct: 389 DRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDHADFPYTVRVVSEITE 448
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 449 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDF------VVLSDILGDEDH 502
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M + P +
Sbjct: 503 LGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINSPRDD 562
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D L+
Sbjct: 563 ISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATD--GLK 619
Query: 749 KSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+AI I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 620 AKEAIRRIEEITAEVEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 678
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D +++G V VK++E++ +G++RLS +
Sbjct: 679 DYLQMGQEVPVKVLEIDRQGRIRLSMK 705
>gi|386743797|ref|YP_006216976.1| polynucleotide phosphorylase/polyadenylase [Providencia stuartii
MRSN 2154]
gi|384480490|gb|AFH94285.1| polynucleotide phosphorylase/polyadenylase [Providencia stuartii
MRSN 2154]
Length = 707
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/747 (41%), Positives = 440/747 (58%), Gaps = 62/747 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG + RQA+ AV V +T ++ + E DFFPL VNY
Sbjct: 4 PIVRKFQYGQHTVSIETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L+ RLIDRPLRP +GF +E QI++ V+S +
Sbjct: 64 QERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ALS VP + I RVG + D++++NPT E++ S+LDL++AG++
Sbjct: 124 VNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKLSRLDLVVAGTE 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSEE ++ AV G D + + E+ LV+ GK K + L
Sbjct: 184 SAVLMVESEADLLSEEQMLGAVVFGHDQQQIVIQEINELVKEAGKEKWDWQPEPVNQALR 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V +A + +I K R + + ++E+V + V++DE V + E + D+L
Sbjct: 244 DKVAALAESRMGDAYRITEKQERYEQVDLIKEEVTAAI-----VAEDENVDVAE-VADIL 297
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+ + + +R R++ G
Sbjct: 298 AN-------------------------------------------LEKQVVRSRVIRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + R +LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 315 RIDGREKDMVRALDVRTSVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGE-YT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P DFPYT+RV S ITE
Sbjct: 374 DRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPDHADFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M + P +
Sbjct: 488 LGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILGTMEQAINSPRDD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D L+
Sbjct: 548 ISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATD--GLK 604
Query: 749 KSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+AI I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 605 AKEAIRRIEEITAEVEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D +++G V VK++E++ +G++RLS +
Sbjct: 664 DYLQMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|383784818|ref|YP_005469388.1| polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrooxidans C2-3]
gi|383083731|dbj|BAM07258.1| polyribonucleotide nucleotidyltransferase [Leptospirillum
ferrooxidans C2-3]
Length = 710
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 319/751 (42%), Positives = 441/751 (58%), Gaps = 55/751 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ V + G + I +ETG M + A G+ TV T++ + A DF PL V+
Sbjct: 2 NPIIVNVSVGGKNIRLETGRMAKLAGGSATVWADGTVVLATAVSAKSMKPGIDFIPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREG+ + EVL RLIDRP+RP L +G+++ETQ+++ V+S D
Sbjct: 62 YQERAYAAGKIPGGFFKREGKPSEREVLNSRLIDRPIRPLLPEGYFYETQLVASVISIDK 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
D +AV AA A+ LS+VP I VR+ LV +IVNPT +E SQ+DL++AG+
Sbjct: 122 GGVADVMAVIAASTALYLSDVPFHSPIGAVRLALVDGNYIVNPTLEEQTKSQIDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DAI+M+EG +SE++ ++ + + +A+ I + L + G+ K P +
Sbjct: 182 RDAIMMVEGQASEVSEDVFLKGIALAHEAILPIIEAQEKLRALAGREKRPIPANPIPMDT 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ E G EL + + + K R+ A+ + +V
Sbjct: 242 VAAIRERFGSELDQAMVLSGKQERQDAVDKIFSQV------------------------- 276
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EV + G+V P E D+ EV LR ++E
Sbjct: 277 -------REVFLSGDV--------------APTPAQEKDLSNAIHEVERLTLREIVLEKK 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR IRPI+ GLLPR HGSALFTRGETQSL+V TLG QRID LE +
Sbjct: 316 IRADGRGLTDIRPITIEVGLLPRTHGSALFTRGETQSLSVATLGTSDDEQRIDALEGE-Y 374
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF L Y+FPP SVGE + P RREIGHG LAERAL PV+P+ FPY+IR+ S I
Sbjct: 375 TKRFMLHYNFPPFSVGEAKPMRGPGRREIGHGNLAERALRPVVPTKEAFPYSIRLVSDIL 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCGG LA+ DAGVPIK +AGVAMG++ + D ILSDI G ED
Sbjct: 435 ESNGSSSMATVCGGTLAMMDAGVPIKAPVAGVAMGLIKEGDRVA------ILSDILGVED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKV G GITA QMDIK+ GITL +MK+AL+QA+ GR HILA+M + +
Sbjct: 489 HLGDMDFKVTGTLQGITAVQMDIKISGITLALMKEALEQARQGRLHILAKMNETLSATRD 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP I +K+K +KI +IG GGK ++ I E+TG + I+ +D G ++I + D S+
Sbjct: 549 VMSPFAPRILTLKIKQDKIREVIGPGGKVIRGITEKTGAK-IEIDDSGLIQIASVDESAA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ +I+ + VG IY ++K+IA YG FVE+ PG GLCHIS+L+ + + K D
Sbjct: 608 QRAVEMINQIVEEVEVGRIYLG-KVKTIADYGAFVELFPGTTGLCHISQLADHRVEKVLD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
VV GD++ VK +EV+ +G++RLSR+ + E
Sbjct: 667 VVSEGDMILVKALEVDRQGKIRLSRKEAVSE 697
>gi|296448311|ref|ZP_06890203.1| polyribonucleotide nucleotidyltransferase [Methylosinus
trichosporium OB3b]
gi|296254188|gb|EFH01323.1| polyribonucleotide nucleotidyltransferase [Methylosinus
trichosporium OB3b]
Length = 714
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 436/744 (58%), Gaps = 59/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ + R++++ETG + RQA GAV + GET + +V A P DFFPL VNYQE+
Sbjct: 8 ELDWAGRKLVLETGKIARQADGAVFASWGETTVLATVVSAKAPKPGQDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAGR GG+FKREGR + E LV RLIDRP+RP G+ ++TQ++ VLS+D + PD
Sbjct: 68 FAAGRIPGGYFKREGRPSERETLVSRLIDRPIRPLFPDGYRNDTQVILTVLSHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+ LS +P + RVG + + +NPT +EM+ S LDL++AG+ DA+L
Sbjct: 128 ILAMVAASAALTLSGIPFMGPVGAARVGYINGQLKLNPTIEEMKLSVLDLVVAGTSDAVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSE++++ AV G + + + + L E K P+ L+
Sbjct: 188 MVESEAQELSEDVMLGAVMTGHRGFQPVIDAIIRLAERAAKDPRDLNVADKSEVTAAVAA 247
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A L +K + R A+ +++ KV L G +K + E DL
Sbjct: 248 IAEAELRTAYKLTVKQE--RYAAVDAVKAKVFAALLPEGGEAKFSKEHVAEAFHDL---- 301
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+K +R I++ G R D
Sbjct: 302 -------------------------------------------QAKVVRWNILDDGVRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI + G+LPRAHGSALFTRGETQ+L V TLG + Q +D+LE + +RF
Sbjct: 319 GRDVKTVRPIVAEVGVLPRAHGSALFTRGETQALVVATLGTGEDEQFVDSLEGTYK-ERF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ +FPYTIRV S ITESNG
Sbjct: 378 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAAEFPYTIRVVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP+K AG+AMG++L+ + F +LSDI G ED GD
Sbjct: 438 SSSMATVCGSSLALMDAGVPLKKPTAGIAMGLILEGERFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+T+ QMDIK+ GIT +M+ AL QA+DGR HIL EM K L +
Sbjct: 492 MDFKVAGTSEGVTSLQMDIKIAGITEEIMRVALAQARDGRLHILGEMAKALTTSRAELGE 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I +K+ +KI +IG+GGK ++ I+E+TG + ++ EDDGTVK+ + D +S++ +
Sbjct: 552 FAPRIETLKIATDKIREVIGTGGKVIREIVEKTGAK-VNIEDDGTVKVASSDANSIKAAI 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY +K+ A +G FV ++GL HIS+L+ + K DVVK
Sbjct: 611 NWIKSIASDPEVGQIYEGTVVKT-ADFGAFVNFFGAKDGLVHISQLAKQRVNKTTDVVKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VKL+ +D+G++RLS R +
Sbjct: 670 GDKVKVKLLGFDDRGKVRLSMRVV 693
>gi|406669280|ref|ZP_11076560.1| polyribonucleotide nucleotidyltransferase [Facklamia ignava CCUG
37419]
gi|405584077|gb|EKB58003.1| polyribonucleotide nucleotidyltransferase [Facklamia ignava CCUG
37419]
Length = 700
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/739 (40%), Positives = 452/739 (61%), Gaps = 58/739 (7%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS--DFFPLNVNYQERFSAAGRT 158
++VE G + RQA+GAV V G+T++ +C A S+PS DFFPL VNY+E+ A G+
Sbjct: 16 LIVEIGEVARQANGAVLVRYGDTVV---LCTAAASSKPSAMDFFPLTVNYEEKMYAVGKI 72
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR +H L RLIDRP+RP +G +E QI++ VLS D P+ A+
Sbjct: 73 PGGFIKREGRPSEHATLTSRLIDRPIRPMFPEGVRNEIQIITTVLSVDNDCSPEMAAMLG 132
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A +A+ +S++P + IAGV+VG ++ I+NP+ + +S + L +AG++ AI M+E
Sbjct: 133 ASLALGVSDIPFNGPIAGVQVGRANNELIINPSVDQAAESDIQLTVAGTEQAINMVESSA 192
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+SE +++A+ G +A++E+ ++ CGK K +I ++ + V++ E
Sbjct: 193 KQVSEAEMLEALLKGHEAIKELIAFQNQIIADCGKEKFELSIVSHEEQIIEEVQQAYREP 252
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+++ ++++ K+ R +A++++ E+V E Y ++ I++++ + + +++E
Sbjct: 253 MLQAIKVQEKLAREEAIAAVMEEVREKY-EAEYADHEDLESIIKSVNEATQRLEKEE--- 308
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
+R+ I R DGR D I
Sbjct: 309 ----------------------------------------MRKLITIDRVRPDGRQVDEI 328
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RP++SR G+LPR HGS LFTRG+TQ+L V TL Q ID L +E KRF Y+FP
Sbjct: 329 RPLASRVGILPRTHGSGLFTRGQTQALTVATLAPLGEYQVIDGL-GVEEGKRFIHHYNFP 387
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE GR+G+P RREIGHG L E+AL V+P FPYTIR+ S + ESNGSSS AS+
Sbjct: 388 PYSVGETGRMGSPGRREIGHGALGEKALNEVIPDVETFPYTIRLVSEVLESNGSSSQASI 447
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
C G LAL DAGVPIK +AG+AMG+V++ + + IL+DI G ED GDMDFKVAG
Sbjct: 448 CAGTLALMDAGVPIKAPVAGIAMGLVMNGEHY------TILTDIQGMEDHLGDMDFKVAG 501
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
+GITA QMDIK+ GIT ++++AL+QA+ R IL + P P LS +AP I +
Sbjct: 502 TSEGITALQMDIKIEGITSQILEEALEQARRARLEILDNLTATLPEPRAELSPYAPKIDM 561
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+++ P+KI ++IG GG+ + II+ETGV+ ID +D+G V I + D + ++++K II LT
Sbjct: 562 IQIDPDKIKVVIGRGGETINKIIDETGVK-IDIDDEGNVSIASSDQAMIDRAKEIIDQLT 620
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
GD+Y+ +K I +G FVE+ PG+EGL HISEL + + + EDV+ +GD V+VK
Sbjct: 621 REVKAGDVYQGT-VKRIEKFGAFVEVLPGKEGLVHISELEHHRVGRVEDVLSLGDQVEVK 679
Query: 819 LIEVNDKGQLRLSRRALLP 837
+ E++D+G++ LSR+ALLP
Sbjct: 680 VTEIDDRGRINLSRKALLP 698
>gi|91774427|ref|YP_544183.1| polynucleotide phosphorylase/polyadenylase [Methylobacillus
flagellatus KT]
gi|123078691|sp|Q1GXD2.1|PNP_METFK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91708414|gb|ABE48342.1| 3' exoribonuclease [Methylobacillus flagellatus KT]
Length = 714
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/760 (41%), Positives = 441/760 (58%), Gaps = 59/760 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G ++ +ETG + RQA GAV V+ G+T++ SV E DFFPL V+YQE+
Sbjct: 8 ITYGQHELTLETGEIARQADGAVMVSYGDTVVLVSVVGKREVKEGQDFFPLTVDYQEKTY 67
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E L RLIDRPLRP + FY+E Q+++ V+S D D
Sbjct: 68 AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVMSSDPEIDADI 127
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A A+A+S +P I RVG + ++++NPT +++++ LDL++A ++ A+LM
Sbjct: 128 PAIIGASAALAISGIPFYGPIGAARVGYINGEYVLNPTASQLKETALDLVVAATESAVLM 187
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E L E++++ +V G + ++ + + + L GK P EL VE
Sbjct: 188 VESEAKELPEDVMLGSVVYGHEQMQIVISAINELAAEVGKEPWDWAPPEPNTELIAKVEA 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+AG ++ + +IK+K R L + +VL L I ET +E
Sbjct: 248 LAGADINEAYKIKSKSARSSKLDEIRSRVLGEL-------------ITETTSTSEANE-- 292
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+K +F + +K +R +I+ G R DGR
Sbjct: 293 ---------------------------------IKSIFHNLEAKVVRSQILNGEPRIDGR 319
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPIS R G+LPR HGSALFTRGETQ+L V TLG + Q ID L+ + RF L
Sbjct: 320 DTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGE-YADRFML 378
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+ PP + GE GR+G P RREIGHG LA+RAL VLPS +F YTIRV S ITESNGSS
Sbjct: 379 HYNMPPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGYTIRVVSEITESNGSS 438
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L DAGVP+K +AG+AMG++ + + +L+DI G ED GDMD
Sbjct: 439 SMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRVA------VLTDILGDEDHLGDMD 492
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E GITA QMDIK+ GIT +M+ AL QAK+GR HIL M + LS+ A
Sbjct: 493 FKVAGTESGITALQMDIKITGITAEIMRVALSQAKEGRLHILGLMKEAVGEQPQELSEFA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I MK+ PEKI +IG GG ++++ EETG ID E+DGT+KI + E++K
Sbjct: 553 PRIITMKINPEKIRDVIGKGGAVIRALTEETGT-TIDIEEDGTIKIGCTSAEAGEEAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T VG +Y +K + +G V + PG++GL HIS+++ + D +K G
Sbjct: 612 IEAITAEVEVGQVYDGTVLK-LLDFGAIVSLLPGKDGLLHISQIAHQRVNAVADFLKEGQ 670
Query: 814 LVDVKLIEVNDKGQLRLSRRALL--PEADAENPPVKLPTG 851
+V VK++EV+DKG++RLS +AL+ P A+A P TG
Sbjct: 671 VVKVKVLEVDDKGRVRLSAKALIEAPSAEAPEEPAVAATG 710
>gi|239833218|ref|ZP_04681547.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
LMG 3301]
gi|444312742|ref|ZP_21148318.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum
intermedium M86]
gi|239825485|gb|EEQ97053.1| Polyribonucleotide nucleotidyltransferase [Ochrobactrum intermedium
LMG 3301]
gi|443483930|gb|ELT46756.1| polynucleotide phosphorylase/polyadenylase [Ochrobactrum
intermedium M86]
Length = 714
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 324/754 (42%), Positives = 450/754 (59%), Gaps = 62/754 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETVVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DVLSMVAASAALTISGVPFMGPIGGARVGYINGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E LSEE+++ AV GQ + + +D I
Sbjct: 187 LMVESEAQELSEEIMLGAVVFGQKGFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS+LE K+L ++ + + T
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSALEAKMLAVVENDLRDAYKIT----------- 260
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E + VD + H P+ + T M S +FK + +K +R I++ G
Sbjct: 261 --EKQARYAAVDAAKAKAKEHFFPEGVEETEM--SPEQFATIFKHLQAKIVRWNILDTGS 316
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q ID L +
Sbjct: 317 RIDGRDLKTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTGTYK- 375
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYTIR S ITE
Sbjct: 376 QPFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPSAEQFPYTIRAVSEITE 435
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED
Sbjct: 436 SNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFA------VLSDILGDEDH 489
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG E+GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 490 LGDMDFKVAGTENGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKALSTSREE 549
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E
Sbjct: 550 LGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNGKEIE 608
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+S+ +AK DV
Sbjct: 609 AAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLASDRVAKTTDV 667
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
VK G V VKL+ +++G++RLS + + E E
Sbjct: 668 VKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|94264886|ref|ZP_01288660.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
gi|93454656|gb|EAT04924.1| Polyribonucleotide nucleotidyltransferase [delta proteobacterium
MLMS-1]
Length = 703
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/751 (41%), Positives = 453/751 (60%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
+ + G R + +ETG + +QASG+V VT G++++ + A DF PL + YQER
Sbjct: 5 LSVEIGGRTLTLETGRLAKQASGSVLVTYGQSVVLVTATAAREARASVDFLPLTIEYQER 64
Query: 152 FSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
F A GR G FF+RE GR ++E L CR+IDRPLRP G+ +ETQ+++ VLS D +
Sbjct: 65 FYAVGRIPGSFFRREIGRPTENETLACRIIDRPLRPLFAAGYQNETQVIATVLSADNEND 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ A A+ +S +P + +AGVRVG++ ++++NP + +S+LDL++AG+ A
Sbjct: 125 PELMAMIGASAALTVSHIPFNGPVAGVRVGMIDGEYVLNPPLDQRHNSRLDLIVAGTSKA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP---EL 327
++M+EG D L E+ + + + +A++ + + + L + G+PKM PPP +L
Sbjct: 185 VVMVEGGADGLPEDEVREGIFFAHEAMQPLIDLQEELCKDVGRPKMEVA---PPPVDEDL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
VE +A E+ +V+ +K R +A +L+E+VL L + +V P
Sbjct: 242 RTRVESLAAAEMTEVISTADKKARGEAAHNLQERVLATLEAD----------LVANTP-- 289
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E D+ K K K + K++ K +R+RIV+
Sbjct: 290 -----------------EADLESKLKEAKG------------LLKDLQKKMMRQRIVKEH 320
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R D R D +RPI+S LPR HGSALFTRGETQ L TLG QRI++L S
Sbjct: 321 QRIDNRRLDEVRPITSEVAALPRVHGSALFTRGETQVLVSATLGSGDDEQRIESL-SGMN 379
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
K F L Y+FPP VGEV + PSRR+IGHG LAERA++ VLP + FPYTIRV S +
Sbjct: 380 FKPFMLHYNFPPYCVGEVRFLRGPSRRDIGHGALAERAIQAVLPDADSFPYTIRVVSEVL 439
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG L+L DAGVP+K +++G+AMG++ + +E ILSDI G ED
Sbjct: 440 ESNGSSSMATVCGASLSLMDAGVPMKKAVSGIAMGLIKEGEEVA------ILSDILGDED 493
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG ++GITA QMDIKV G++ +M +AL QAKD R HIL +M + P
Sbjct: 494 HLGDMDFKVAGTDEGITALQMDIKVEGVSREIMTQALNQAKDARLHILEKMQQALEAPRR 553
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ +HAP + + + P+KI +IG GGK ++ I + GV+ ID EDDG VKI A +
Sbjct: 554 EVPEHAPKLFTININPDKIRDVIGPGGKVIRGITADYGVK-IDVEDDGKVKIFAPNGEVA 612
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++ + ++ +LT +G IY ++ I +G FV+I PG +GL HISEL + + K D
Sbjct: 613 DQVRELVLSLTAEAEIGKIYTGT-VQKIMDFGAFVQILPGTDGLVHISELENRRVEKVTD 671
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
V+K GD V VK+++++ +G++RLSR+A+L E
Sbjct: 672 VLKEGDEVRVKVLDIDGRGKIRLSRKAVLAE 702
>gi|330836568|ref|YP_004411209.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta coccoides
DSM 17374]
gi|329748471|gb|AEC01827.1| Polyribonucleotide nucleotidyltransferase [Sphaerochaeta coccoides
DSM 17374]
Length = 705
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 321/761 (42%), Positives = 452/761 (59%), Gaps = 65/761 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+ VSVKI GD +++ ETG + +QA+G++ + + I +VC PSEP D+ PL+V
Sbjct: 5 KKVSVKI--GDGELVFETGKIAKQANGSIYASYEGSAIIATVCCGAAPSEPLDYVPLSVE 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E++ AAG+ GGF KRE R KD E+LV RLIDRP+RP K F E QI+ V+S D
Sbjct: 63 YNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQIVPTVVSSDQ 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ AA AV +S++P + I VR+ LV +I+NPT Q+ +QLD++++G+
Sbjct: 123 ANQPDIIAINAASAAVMISDIPFAGPIGAVRIALVDGDYIINPTFQQTAQAQLDIVVSGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D I M+EG +SEE++++A+ Q + + + A +E+
Sbjct: 183 RDGITMVEGGAKEVSEEVMLKAIAAAQPVITALCD---AQIEL----------------- 222
Query: 328 YKHVEEIAGEELVKVLQIKNKIP-----RRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
++I G+E + ++QI + R A + EK N Y + D ++
Sbjct: 223 ----QKIVGKEKLPIIQINRDLSWLGPIRAAAYPLVAEKSFVKGKSNRYDALDAVKSDIK 278
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
+ ED GEVD +F+++ + LR+
Sbjct: 279 AQFAEVIGEDSKRS----GEVDS------------------------LFEDLEYEILRKS 310
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I++ G R+DGR D IRPI+ GLLP HGSALFTRGETQSLAV TLG Q D +
Sbjct: 311 ILDNGVRTDGRKVDDIRPITCEVGLLPMTHGSALFTRGETQSLAVTTLGTASDEQMFDTI 370
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ + F L Y+FPP SVGE GR+ + RREIGHG LA+RAL+ ++P FPYT+RV
Sbjct: 371 DGEKSFSSFMLHYNFPPYSVGETGRL-STGRREIGHGHLAQRALQAIVPPKEKFPYTVRV 429
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S I ESNGSSSMASVCGGCL+L DAGVPIK +AG+AMG++ + +++ ++LSDI
Sbjct: 430 VSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGEDYA---RYVVLSDI 486
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG EDGITAFQMDIK+ G+T +M KAL QAK GR HIL M K
Sbjct: 487 LGEEDHLGDMDFKVAGTEDGITAFQMDIKIAGVTPEIMSKALDQAKRGRLHILDVMGKTL 546
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P +S++AP I +KV +KI IIG+GGK +KSI ++G E I+ +DDGTV I +
Sbjct: 547 KTPRAEVSEYAPKILTIKVDEDKIGAIIGTGGKTIKSIALQSGAE-INIDDDGTVTIYGR 605
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
+ S + +K ++ ++ P VG IY+ +K I +G F+EI PG+EGLCHIS+L+ +
Sbjct: 606 NSKSAQTAKELVQSIVEEPEVGRIYQGT-VKRIMDFGAFIEILPGKEGLCHISKLAKTRV 664
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
DV+ +G V VKLIEV+ G+L LS + + DA+
Sbjct: 665 NNVGDVLSLGQSVPVKLIEVDRMGRLNLSYIDAIEDKDAKK 705
>gi|408377186|ref|ZP_11174789.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
albertimagni AOL15]
gi|407749145|gb|EKF60658.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
albertimagni AOL15]
Length = 714
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 320/750 (42%), Positives = 445/750 (59%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSAKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ +ETQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNETQVVVTVVQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E L+EE+++ AV G + + + + L E+ K P+ + PE +
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPREFE------PEDHS 239
Query: 330 HVE----EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E IA EL +I K R A+ +++ KV
Sbjct: 240 ALEAEMLSIAETELRAAYKITQKADRYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 ---------------------KAHFFPEGEE--PKYTNEV-IGAVFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +R I S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL QA+ GR+HIL EM
Sbjct: 486 EDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALAQAQGGRKHILGEMANAITEG 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RSQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASASGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGVIYEGTVVKT-ADFGAFVNFFGSRDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 SDVVKEGDKVWVKLMGFDERGKVRLSMKVV 693
>gi|407712803|ref|YP_006833368.1| polyribonucleotide nucleotidyltransferase [Burkholderia
phenoliruptrix BR3459a]
gi|407234987|gb|AFT85186.1| polyribonucleotide nucleotidyltransferase [Burkholderia
phenoliruptrix BR3459a]
Length = 713
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/759 (41%), Positives = 445/759 (58%), Gaps = 58/759 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 11 WGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 71 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M+DS LDL++AG++ A+LM+E
Sbjct: 131 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVAGTERAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ AV G + ++ + + LV GKP+ L V E+A
Sbjct: 191 SEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEWDWQPAAKNEPLIARVTELA 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+L+ QI++K R L + V L +E
Sbjct: 251 QADLLAAYQIRDKQARSTKLKEVYAAVSAKL---------------------------EE 283
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E G V + K+T V V ++ +K +R +I+ G R DGR
Sbjct: 284 EAAASGTV---------AADKAT--------VGNVLFDIEAKIVRTQILNGEPRIDGRDT 326
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L Y
Sbjct: 327 RTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYR-ERFMLHY 385
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSSM
Sbjct: 386 NMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNGSSSM 445
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDFK
Sbjct: 446 ASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDFK 499
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 500 VAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSEFAPR 559
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 560 MITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRIE 618
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K G V
Sbjct: 619 NITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKDGQQV 677
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
VK+I+ ++KG++RLS +ALL +A + P G+PT
Sbjct: 678 KVKVIQTDEKGRVRLSAKALLNDAAS-----GAPQGEPT 711
>gi|404496453|ref|YP_006720559.1| polynucleotide phosphorylase/polyadenylase [Geobacter
metallireducens GS-15]
gi|418064821|ref|ZP_12702197.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens RCH3]
gi|123729281|sp|Q39VA1.1|PNP_GEOMG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78194056|gb|ABB31823.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens GS-15]
gi|373563094|gb|EHP89295.1| polyribonucleotide nucleotidyltransferase [Geobacter
metallireducens RCH3]
Length = 697
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 322/757 (42%), Positives = 442/757 (58%), Gaps = 75/757 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V + FG R I + TG M +QASGAV V+ GET++ + E DFFPL VNYQE+
Sbjct: 6 VNVDFGGRTITIATGKMAKQASGAVMVSCGETMVLVTAVALKSAKEGQDFFPLTVNYQEK 65
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGFFKREGR ++E L CR IDRP+RP + F ++TQI++ V+S D + P
Sbjct: 66 AYAGGKIPGGFFKREGRPTENETLTCRFIDRPIRPLFPENFLNDTQIMATVVSADQDNDP 125
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
LA+ A A+ +S++P IAGV+VG V KFI NPT +++ S L++++A S DA+
Sbjct: 126 GILAMIGASAALEVSDIPFFGPIAGVKVGRVDGKFICNPTAEQLAASDLEVVVAASRDAV 185
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----L 327
+M+EG +SE L++A+ G +V+ I + L + G PK ++ PP L
Sbjct: 186 IMVEGGAAEISEADLLEAIFFGHASVQPIIDAQIELRKQAGVPKR----EIAPPAVDEAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+E+A ++ ++I++K R +S++ DETV +E
Sbjct: 242 GAKVKELAYAQMKDAVRIRSKQERHNRISAI---------------ADETVAALEAD--- 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSE--VDVKLVFKEVTSKFLRRRIVE 445
FS ++K + +R I++
Sbjct: 284 ----------------------------------FSGRGAEIKDFLDGFEYELVREHILK 309
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR IRPI+S G+LPR HGSALFTRGETQ+L TLG QRID+L +
Sbjct: 310 DGERIDGRDTKTIRPITSEVGILPRVHGSALFTRGETQALVAATLGTSSDEQRIDSLYGE 369
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
KRF L Y+FPP SVGE AP RREIGHG LAERALE VLP +DFPYTIR+ S
Sbjct: 370 SR-KRFMLHYNFPPFSVGETSFRLAPGRREIGHGYLAERALERVLPKHDDFPYTIRIVSD 428
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
I ESNGSSSMASVCGG L++ DAGVPI +AG+AMG++ + D+ ILSDI G
Sbjct: 429 ILESNGSSSMASVCGGALSMMDAGVPISAPVAGIAMGLIKEGDDIA------ILSDILGD 482
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ G+T +M KAL+QAK+GR HIL +M + P
Sbjct: 483 EDHLGDMDFKVAGTSTGVTAIQMDIKITGVTREIMGKALEQAKEGRLHILGKMAEALAAP 542
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS +AP I + VK +KI +IG+GGK V+ I E TGV +ID ED G + I + +
Sbjct: 543 RTDLSPYAPRITTIWVKTDKIRDVIGAGGKNVRGITEATGV-SIDIEDTGKINIASTNKE 601
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +K+ +I +LT G +Y ++ + +G FVEI PG +GL HISEL + +
Sbjct: 602 ACDKAIKMIRDLTAEAEEGKLYMGT-VRKVMDFGAFVEIFPGTDGLVHISELDTERVKDV 660
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRR----ALLPE 838
D++K GD V VK I ++ +G+++LSR+ A+LPE
Sbjct: 661 TDILKEGDKVLVKCIGIDKQGKIKLSRKEALGAVLPE 697
>gi|225025578|ref|ZP_03714770.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
23834]
gi|224941616|gb|EEG22825.1| hypothetical protein EIKCOROL_02480 [Eikenella corrodens ATCC
23834]
Length = 701
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/746 (41%), Positives = 443/746 (59%), Gaps = 62/746 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA+GAV V+ GET++ +V DFFPL V+Y ER AA
Sbjct: 11 YGQHTVTIETGEIARQAAGAVKVSMGETVVLVAVTANKEVKAGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GF+H+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVATVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + ++++NPT ++ SQLDL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPTKTQLAKSQLDLVVAGTAQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE--LYKHVEE 333
L E++++ AV G + ++ + + L + P++ D K P + L V+E
Sbjct: 191 SEAQILPEDVMLGAVVYGHNEMQAVIRAINELADAV-NPEVWDW-KAPETDAALVAKVQE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAG+ + + +I+ K R L DE VE L ED
Sbjct: 249 IAGQTVAEAFKIRQKQARTAKL-------------------DEAWAAVEA---ALITEDT 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + +K +FK + + +R +I+ G R DGR
Sbjct: 287 DT--------------------------LAANQIKGIFKHLEANVVRSQILAGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + G+LPR HGSALFTRGETQ+LAV TLG ++ Q ID L S + RF L
Sbjct: 321 DTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GE GR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLGVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL E +K + LS+HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHIL-EQMKAAVAGPQELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++++ ETG E I+ EDDGT+ I A ++ ++E ++
Sbjct: 553 PRLFTMKINQDKIRDVIGKGGETIRALTAETGTE-INIEDDGTITIAAVNVEAVEAARKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y IK + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGQVYNGVVIKILDNNVGAIVSVMPGKDGLVHISQIAHERVKDVNDYLRVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPE 838
V VK +EV+D+G++RLS +ALL +
Sbjct: 672 QNVRVKALEVDDRGRVRLSMKALLDQ 697
>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
Length = 715
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/759 (41%), Positives = 445/759 (58%), Gaps = 58/759 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 13 WGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M+DS LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKDSALDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ AV G + ++ + + LV GKP+ L V E+A
Sbjct: 193 SEAQQLSEEVMLGAVVFGHEQMQVAIDAIHDLVREGGKPEWDWQPAAKNEPLIARVTELA 252
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+L+ QI++K R L + V L +E
Sbjct: 253 QADLLAAYQIRDKQARSTKLKEVYAAVSAKL---------------------------EE 285
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E G V + K+T V V ++ +K +R +I+ G R DGR
Sbjct: 286 EAAASGTV---------AADKAT--------VGNVLFDIEAKIVRTQILNGEPRIDGRDT 328
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L Y
Sbjct: 329 RTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYR-ERFMLHY 387
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSSM
Sbjct: 388 NMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNGSSSM 447
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDFK
Sbjct: 448 ASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDFK 501
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 502 VAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSEFAPR 561
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 562 MITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRIE 620
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K G V
Sbjct: 621 NITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKDGQQV 679
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
VK+I+ ++KG++RLS +ALL +A + P G+PT
Sbjct: 680 KVKVIQTDEKGRVRLSAKALLNDAAS-----GAPQGEPT 713
>gi|289434612|ref|YP_003464484.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170856|emb|CBH27398.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 723
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/750 (41%), Positives = 449/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTHDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + +++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L GY +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----EGYKTKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------VLSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS GLLPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ DFPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEDFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++++AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVQVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ LL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKVLLEKKEQPEGD 704
>gi|377821149|ref|YP_004977520.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. YI23]
gi|357935984|gb|AET89543.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. YI23]
Length = 717
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/755 (41%), Positives = 444/755 (58%), Gaps = 63/755 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 16 WGQHNVRLETGEIARQASGAVIVDIEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 75
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 76 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIPA 135
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 136 LIGASAALAISGLPFNGPVGAARVAYLNNEYVLNPTRAQMKESALDLVVAGTERAVLMVE 195
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
LSEE+++ AV G D ++ + + LV GKP+ D P E L V EI
Sbjct: 196 SEAQQLSEEVMLGAVVFGHDQMQTAIDAIHELVREGGKPEW-DWAPAPKNEALIARVTEI 254
Query: 335 AGEELVKVLQIKNKIPR----RKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
A EL Q++NK R ++ ++ K+ + +G V+ D+ T+ ++L D
Sbjct: 255 AKPELEAAYQLRNKSARSAKLKEVYAAASAKLEADAAASGTVAADKA-----TVGNVLFD 309
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 310 -------------------------------------------IEAKIVRTQILNGEPRI 326
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +R
Sbjct: 327 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYR-ER 385
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESN
Sbjct: 386 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESN 445
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 446 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 499
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M P + LS
Sbjct: 500 DMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAVPHTNTELS 559
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++
Sbjct: 560 DYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEA 618
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V I PG++GL HISE+ + + D +K
Sbjct: 619 KKRIENITAEVEVGQVYEGPVLK-LLDFGAIVNILPGKDGLLHISEIVNERVKDINDYLK 677
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
G +V VK+I+ ++KG++RLS +ALL E + P
Sbjct: 678 EGQIVKVKVIQTDEKGRVRLSAKALLNEGAQQAEP 712
>gi|410465127|ref|ZP_11318491.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409981755|gb|EKO38280.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 749
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 320/752 (42%), Positives = 441/752 (58%), Gaps = 59/752 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ ++ GD+ + +ETG + QA GAV + G T++ + C + +E FFPL V+Y
Sbjct: 7 PIRLEAAIGDKTVTIETGRLANQADGAVWIQSGGTVVLVTACTQAL-AEEKGFFPLVVDY 65
Query: 149 QERFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
QE AAGR G +F+RE GR + EVLVCRLIDRP RP KGF E QI++ VLS DG
Sbjct: 66 QEMAYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADG 125
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME-DSQLDLLLAG 266
PD LA+T A A+ S++P IAG RVG + +F++NPT ++ ++L+L+ A
Sbjct: 126 EVEPDVLALTGASAALHASKIPFQGPIAGGRVGYIDGQFVLNPTVAQIAAGAELNLVFAA 185
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
S DA++M+EG F+SE++L A++ G +V + + + L E GKPK+ T P E
Sbjct: 186 SRDAVVMVEGAGRFVSEDLLADALEFGHKSVLPLLDLQEQLREKAGKPKIAFTPPAPIVE 245
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V A L + I+ K+ RR+A ++++ V+ +V P+
Sbjct: 246 LEALVAATAEAGLKQAFTIQEKMARREARKAVKQAVIE--------------AVVAAYPE 291
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
TP+ ++ + + + K LR+ I E
Sbjct: 292 -------------------------------TPLY--KMKAGEILESMEKKLLRKLIKET 318
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR +RPI G+LPR HGSALF RGET++L V TLG Q+I+ L + +
Sbjct: 319 GIRLDGRNTTTVRPIGIEVGVLPRTHGSALFARGETKALCVATLGSTGDEQKIETL-NGE 377
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
KRF L Y+FPP VGEV + PSRREIGHG LAER++ PVLP +FP+T+R+ S +
Sbjct: 378 TYKRFMLHYNFPPYCVGEVKMLRGPSRREIGHGALAERSILPVLPGPEEFPFTMRIVSQV 437
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
ESNGSSSMASV G LAL DAGVPIK +AG+AMG++ + D+F L+L+DI G E
Sbjct: 438 MESNGSSSMASVAGASLALMDAGVPIKAPVAGIAMGLIKEDDDF------LVLTDILGDE 491
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DA GDMDFKVAG DG+T QMDIK+ GI VM++AL QAK+ R HIL M P P
Sbjct: 492 DAMGDMDFKVAGTADGVTGIQMDIKITGIPQAVMRQALYQAKEARIHILGRMAAVLPQPR 551
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS AP + ++ + PEKI +IG GGK +K++ ETG +ID ED G + I A L S
Sbjct: 552 PELSALAPQLAVVHINPEKIREVIGPGGKNIKAMTAETGA-SIDIEDTGKISIFAPTLES 610
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
LEK+KA + VG Y+ IK I GV VEI PG EGL H+S+L +A
Sbjct: 611 LEKAKARVLYYDQHADVGANYKGRVIK-IIDCGVIVEILPGLEGLVHVSQLDVERVASPA 669
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
DVVK+G ++VK+++V G++RLSR+A++ E
Sbjct: 670 DVVKMGQELEVKVLDVEPTGRVRLSRKAVMNE 701
>gi|237808986|ref|YP_002893426.1| polynucleotide phosphorylase/polyadenylase [Tolumonas auensis DSM
9187]
gi|259534170|sp|C4L8X0.1|PNP_TOLAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237501247|gb|ACQ93840.1| Polyribonucleotide nucleotidyltransferase [Tolumonas auensis DSM
9187]
Length = 720
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 316/766 (41%), Positives = 444/766 (57%), Gaps = 64/766 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ P+G + +ETG M RQA+ AV V+ +T + +V E DFFPL VN
Sbjct: 2 NPIVKTFPYGQHTVTIETGVMARQATAAVMVSMDDTAVLVTVVGKKEAVEGRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFFKREGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFLNEVQVVATVMSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+A+S +P + I RVG + D++I+NP+ E+++S+LDL++AG+
Sbjct: 122 AVSPDIVAMIGTSAALAISGIPFNGPIGAARVGYINDQYILNPSVVELQESKLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
A+LM+E L EE+++ AV G D ++ + V G L
Sbjct: 182 AAAVLMVESEAAILPEEVMLGAVVYGHDQLQTVIKAVNEFAAEVGTKPWNWVAPAANVTL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ E+A + + +I K R A+S+L+++++ + V+ DET
Sbjct: 242 KAKIAELAVAAIGEAYRITEKAVRYDAISALKQRIVAEI-----VAADET---------- 286
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+D V D +F E+ S +R RI+ G
Sbjct: 287 -----QDAGEVAD-----------------------------LFHELESDVVRGRILRGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR IR +S G+LPR HGSALFTRGETQ+L TLG ++ AQ ID + + +
Sbjct: 313 PRIDGRDPQMIRALSVGTGVLPRVHGSALFTRGETQALVACTLGTERDAQTIDEI-TGER 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA R + V+PS +FPY +RV S IT
Sbjct: 372 TDRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLARRGVSAVIPSQAEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDSF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QA+D R HIL M K +
Sbjct: 486 HLGDMDFKVAGTSEGVTALQMDIKIEGITKEIMQIALKQARDARLHILTVMDKAIGVARD 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH +K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI A +
Sbjct: 546 DISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGT-TIELEDDGTVKIAAVSGEAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ I LT +G IY ++ +A +G FV I PG++GL HIS+++ + D
Sbjct: 605 QEAIRRIQALTADVEIGRIYEG-KVTRLAEFGAFVNILPGKDGLVHISQITDERVKDVSD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS----RRALLPEAD--AENPPVK 847
+KVGD+V K++EV+ +G++RLS +R LP A+ AE+ P +
Sbjct: 664 YLKVGDMVRTKVLEVDRQGRIRLSIKEAKRDELPAAESVAESAPAQ 709
>gi|390454020|ref|ZP_10239548.1| polynucleotide phosphorylase [Paenibacillus peoriae KCTC 3763]
Length = 700
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/745 (41%), Positives = 447/745 (60%), Gaps = 57/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ G R++++ETG + +QA+ AV V+ GET++ +V + P + DFFPL VNY+ER
Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGF KREGR +L RL DRP+RP +GF ++ Q+L+ V+S D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ A+++S+VP + I GV VG V +F++NP + + S L L++AG+ DAI
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQKTSDLYLVVAGTKDAI 183
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E D + EE++++A+ G D ++ I ++ LV++ GK KM + ++ V
Sbjct: 184 MMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAAIEQLVQVAGKEKMQVKLHAVDDKVNSEV 243
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A E LV+ ++I K R++A+ ++ E + E Y+ P+LL+D
Sbjct: 244 RAYAAERLVEAVKIAEKHARQEAIDAINEATVAHF-EAQYIET----------PELLKD- 291
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
SEV +V +EV RR I R D
Sbjct: 292 ------------------------------VSEVLYDIVKEEV-----RRLITHDKVRPD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + IRPI S +LPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E KRF
Sbjct: 317 GRKLNEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETKRF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE + AP RREIGHG L ERAL V+PS+ +FPYTIR+ S + ESNG
Sbjct: 376 MHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEVLESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AGVAMG++ D D +L+DI G ED GD
Sbjct: 436 STSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------VLTDIQGMEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI +++ AL+QA++GR IL +M++ P LS
Sbjct: 490 MDFKVAGTAEGVTAIQMDIKIDGIDREILQDALKQAREGRLFILGKMMEAIQKPREQLSP 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG+GGK + IIEETGV+ ID E DG V I + + EK++
Sbjct: 550 YAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASTNQEMNEKAR 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+II + VG+IY +K I +G FVEI PG++GL HIS+LS+ +AK EDV+ +
Sbjct: 609 SIIEGIVKEVVVGEIYIGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDVIAI 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD + VK+ E++ +G++ LSR+A+L
Sbjct: 668 GDTITVKVTEIDQQGRVNLSRKAVL 692
>gi|448240208|ref|YP_007404261.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
WW4]
gi|445210572|gb|AGE16242.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
WW4]
gi|453064994|gb|EMF05958.1| polynucleotide phosphorylase/polyadenylase [Serratia marcescens
VGH107]
Length = 705
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/757 (40%), Positives = 439/757 (57%), Gaps = 59/757 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G D + + + ALV GKPK L+
Sbjct: 184 GAVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNEALH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A L I K R + ++++ V+ L +++DET+
Sbjct: 244 ARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETL-----LAQDETL---------- 288
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
D G++ + + + +R R++ G
Sbjct: 289 ---------------DAGEI-------------------QDILGNLEKNVVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGE-KT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DFPYT+RV S ITE
Sbjct: 374 DSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D + ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNY------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 FAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + A+ PEA + P
Sbjct: 666 LQMGQEVPVKVLEVDRQGRVRLSIKEAMAPEAGSPAP 702
>gi|378823303|ref|ZP_09845961.1| polyribonucleotide nucleotidyltransferase [Sutterella parvirubra
YIT 11816]
gi|378597879|gb|EHY31109.1| polyribonucleotide nucleotidyltransferase [Sutterella parvirubra
YIT 11816]
Length = 707
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 312/750 (41%), Positives = 444/750 (59%), Gaps = 55/750 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
VS FG+ + +ETG + RQA+G+ +T++ +V DFFPL V+Y
Sbjct: 7 VSKTFRFGNHDVTLETGEIARQATGSCICRMDDTVVLATVVAKKEAKPGQDFFPLTVDYI 66
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAG+ GGFFKREGR + E L RLIDRP+RP GF++E Q++ VLS D +
Sbjct: 67 EKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSADPMV 126
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P I RVG V D F++NPTT+E++ S+LDL++AG++
Sbjct: 127 DPDIPAMIGASAALAISGIPFKGPIGACRVGYVNDAFVLNPTTEELKTSRLDLVVAGTER 186
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LY 328
A+LM+E D L E+ ++ AV G ++ N + LV GKP D P E LY
Sbjct: 187 AVLMVESEADVLPEKTMLDAVMFGHREMQVAINAINELVAEAGKPAW-DWQPAPKNEALY 245
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ EIA L + I+ K R + L + V L+ + + E
Sbjct: 246 ARIVEIADAGLKEAFSIRQKQARTEKLREVYALVEATLTADAESAGTEVA---------- 295
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
D +VH +LF E+ +K +R I+ G
Sbjct: 296 ---------------DMNEVH---------GILF----------ELEAKIVRSNILNGEP 321
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI R +LPR HGSALFTRGETQ+L TLG KQ Q ID L ++
Sbjct: 322 RIDGRDTRTVRPIEIRQSVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGL-CEETH 380
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL+ VLP+ ++F YTIRV S I E
Sbjct: 381 ERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALKAVLPTADEFQYTIRVVSEICE 440
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCGGCL++ DAGVP+K +AGVAMG++ + ++F +L+DI G ED
Sbjct: 441 SNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNKFA------VLTDILGDEDH 494
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG E+G+TA QMDIK+ GIT +M+ AL QA +GR+HIL +M + + ++
Sbjct: 495 LGDMDFKVAGTENGVTALQMDIKIEGITAEIMQAALAQAHEGRQHILGKMHEMAGGGAHE 554
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS +AP + K+ PEKI +IG GG ++++ EETG I+ EDDGTV I + D++ +E
Sbjct: 555 LSDYAPRMVSFKINPEKIRDVIGKGGSTIRALTEETGT-TINVEDDGTVTIASPDMARVE 613
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+++ I +T G IY ++ + +G V++ PG++GL HIS++++ + + D
Sbjct: 614 EARRRIELITAEVEAGQIYEGT-VQRLLEFGAIVQLLPGKDGLLHISQIANERVNQVSDY 672
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+K G V VK+IE ++KG++RLS +ALL E
Sbjct: 673 LKEGQKVRVKVIEADEKGRVRLSMKALLKE 702
>gi|417643550|ref|ZP_12293592.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
VCU121]
gi|445059807|ref|YP_007385211.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU121]
gi|443425864|gb|AGC90767.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
Length = 699
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/743 (41%), Positives = 453/743 (60%), Gaps = 55/743 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V K+++NPT E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFLGPIAGVNVGYVDGKYVINPTVAEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G D E+K LV + +++D I+ PE + +
Sbjct: 188 MVEAGASEITESEMLEAIFFGHD-------EIKRLVAF--QQEIIDYIQ---PEKQEFIP 235
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
EELV+ K+ L++ VLT + ++ D + + + +++ED
Sbjct: 236 VERDEELVE------KVKSLTEAKGLKDTVLTFDKQQRDINLDALKE--DIVAEFIDEED 287
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
D E ++ +V + ++ + +RR I + R DG
Sbjct: 288 PDNEALIK-------------------------EVYAILNDLVKEEVRRLIADEKIRPDG 322
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L ++E KRF
Sbjct: 323 RKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE-KRFM 381
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE G + AP RREIGHG L ERAL+ ++P +DFPYT+R+ S + ESNGS
Sbjct: 382 HHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTSDFPYTVRIVSEVLESNGS 441
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA GDM
Sbjct: 442 SSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMEDALGDM 495
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P N LS +
Sbjct: 496 DFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQPRNELSAY 555
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + M +KPEKI +IG GGKK+ II+ETGV+ +D E DG + I A D +++++
Sbjct: 556 APKVVTMNIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGQIFIGAVDQEMIDRARE 614
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II +T VG +Y N ++K I YG FVE+ PG++ L HIS++S+ + K EDV+K+G
Sbjct: 615 IIEEITREAEVGQVY-NAKVKRIEKYGAFVELFPGKDALLHISQISTERINKVEDVLKLG 673
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
D ++VK+ E++ +G++ S +A+
Sbjct: 674 DSIEVKVTEIDKQGRVNASHKAI 696
>gi|381394387|ref|ZP_09920104.1| polyribonucleotide nucleotidyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379329989|dbj|GAB55237.1| polyribonucleotide nucleotidyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 704
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 310/748 (41%), Positives = 438/748 (58%), Gaps = 58/748 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P++ +G + +ETG + RQA+ AV + +T + +V +FFPL VNY
Sbjct: 3 PITKTFQYGQHTVTLETGVIARQATAAVMASMDDTTVLVTVVGRKEAKADQNFFPLTVNY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QE+ AAG+ GGFFKREGR + E L+ RLIDRP+RP F +E QI+ V+S +
Sbjct: 63 QEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPSAFKNEVQIIITVISANPE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
D +++ A+A+S +P S + RVG V ++FI+N T E+E+S+LDL++AG+D
Sbjct: 123 IPTDIISLIGTSAALAISGMPFSGPVGAARVGYVNNEFILNTRTSELEESKLDLVVAGTD 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSEE+++ AV G + + + N +K G T P L
Sbjct: 183 SAVLMVESEADVLSEEVMLGAVVYGHEQSQTVVNAIKEFAAEVGTESWNWTAPEPNVALK 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
++ IA E + K QI +K+ R+ A+ +++ N
Sbjct: 243 DKIKAIAQESMTKAYQISDKLARKDAVD--------VVTANAR----------------- 277
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E+ D + PK +V + E+ S +R RI+ G +
Sbjct: 278 ------------AELTTADDSLDPK------------EVSELLHELESDVVRSRILAGEK 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR + IR + GLLPRAHGSA+FTRGETQ+L V TLG ++ AQ ID L S
Sbjct: 314 RIDGRDPETIRGLHVATGLLPRAHGSAVFTRGETQALVVATLGTERDAQMIDGL-SGLSN 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+FPP SVGE G +G+P RREIGHG LA+R ++ V+PS +FPY +RV S ITE
Sbjct: 373 NRFMLHYNFPPYSVGETGFVGSPKRREIGHGRLAKRGMQAVMPSAEEFPYVVRVVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V D F ++LSDI G ED
Sbjct: 433 SNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNF------VVLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG GITA QMDIK+ GIT +M+KAL+QAK+ R HIL+ M +
Sbjct: 487 LGDMDFKVAGTTGGITALQMDIKIEGITQEIMQKALKQAKEARLHILSVMDQAIGSHREE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP I+++K+ +KI +IG GG ++SI E+T I+ EDDGT+KI A + + +
Sbjct: 547 MSEFAPRIYVIKINSDKIREVIGKGGAVIRSITEDTDTN-IEIEDDGTIKIFATEKTKAD 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ A I +T VG Y + ++ I +G FVE+ PG+EGL HIS+++ +AK D
Sbjct: 606 AAIARIEQVTAELEVGKTY-HGKVMRIVDFGAFVEVLPGKEGLVHISQIAHERVAKVSDY 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALL 836
+K G VDVK++E++ + ++RLS + LL
Sbjct: 665 LKEGQAVDVKVMEIDRQNRVRLSMKELL 692
>gi|261217986|ref|ZP_05932267.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261321164|ref|ZP_05960361.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
gi|260923075|gb|EEX89643.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M13/05/1]
gi|261293854|gb|EEX97350.1| polyribonucleotide nucleotidyltransferase [Brucella ceti M644/93/1]
Length = 714
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 324/758 (42%), Positives = 448/758 (59%), Gaps = 70/758 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R + +ETG + RQA GAV T GET + +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLTLETGKIARQADGAVLATYGETAVLATVVSAKEPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP + G+ ++TQ++ VL +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFVDGYKNDTQVVITVLQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ AA A+ +S VP I+G RVG + ++++NP EM +S+LDL++AG+ +A+
Sbjct: 127 DILSMVAASAALTISGVPFMGPISGARVGYIDGEYVLNPNIDEMPESKLDLVVAGTSEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + + +D I
Sbjct: 187 LMVESEAQELPEDVMLGAVMFGHKSFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRR---KALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+K+ ++ K PR + LS LE KVL ++ EN DL
Sbjct: 220 --------IKLAEVAAKEPRDFQPEDLSELEAKVLAVV-EN----------------DLR 254
Query: 389 E----DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
E E + VD + H P+ + T M S +FK + +K +R I+
Sbjct: 255 EAYKITEKQARYAAVDAAKAKAKEHFFPEGVEETEM--SAEQFATIFKHLQAKIVRWNIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR +R I S G+LPR HGSALFTRGETQ++ V TLG + Q ID L
Sbjct: 313 DTGNRIDGRDLSTVRSIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQMIDALTG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYTIR S
Sbjct: 373 TYK-ESFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPAAEQFPYTIRAVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMA+VCG LAL DAGVPI +AG+AMG++ + + F +LSDI G
Sbjct: 432 EITESNGSSSMATVCGTSLALMDAGVPIVRPVAGIAMGLIKEGERFA------VLSDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 486 DEDHLGDMDFKVAGTEFGITSLQMDIKIDGITEEIMKVALEQAKGGRVHILGEMAKAISS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + +
Sbjct: 546 SRAELGEFAPRIEVMNIPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+E +K I ++ P VG+IY +K+ A +G FV R+GL HIS+L+++ +AK
Sbjct: 605 KEIEAAKKWIHSIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPRDGLVHISQLAADRVAK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DVVK G V VKL+ +++G++RLS + + E E
Sbjct: 664 TTDVVKEGQKVWVKLMGFDERGKVRLSMKVVDQETGKE 701
>gi|335040856|ref|ZP_08533977.1| Polyribonucleotide nucleotidyltransferase [Caldalkalibacillus
thermarum TA2.A1]
gi|334179291|gb|EGL81935.1| Polyribonucleotide nucleotidyltransferase [Caldalkalibacillus
thermarum TA2.A1]
Length = 712
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 314/737 (42%), Positives = 449/737 (60%), Gaps = 53/737 (7%)
Query: 104 ETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFF 163
E G M +QA+GAV G+T + +V + P + DFFPL VNY+ER A G+ GGF
Sbjct: 21 EVGKMAKQANGAVLARYGDTAVLCTVTASKEPKD-LDFFPLTVNYEERLYAVGKIPGGFI 79
Query: 164 KREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAV 223
KREGR + VL RLIDRP+RP GF +E ++S VLS D P+ A+ + +A+
Sbjct: 80 KREGRPSEKAVLASRLIDRPIRPLFPDGFRNEVHVISTVLSVDQDCSPEITAMIGSSLAL 139
Query: 224 ALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSE 283
+S++P + IAGV VG +GD+ I+NPT Q++E S ++L++AG+ I M+E D + E
Sbjct: 140 MISDIPFAGPIAGVNVGRIGDELIINPTWQQLEKSDINLIVAGTQQGINMVEAGADEVPE 199
Query: 284 EMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVL 343
E++++A+ G + ++++ N + + GK KM + PE+ + VE + L+ V+
Sbjct: 200 EIMLEAMLRGHEEIQKLVNFQLEITKEVGKEKMEVELYEVAPEIEQAVEAFTKDRLLDVI 259
Query: 344 QIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEV 403
+K K R +A+ +L KDET V+ I + + ++DE+ E
Sbjct: 260 LVKEKKAREEAIQAL---------------KDET---VQHISESIAEDDEERE------- 294
Query: 404 DEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISS 463
K K DV++VF + K +RR I R DGR +D IR IS
Sbjct: 295 ---------KKLK---------DVEIVFDSLLKKEVRRLITVEKIRPDGRKSDEIRSISC 336
Query: 464 RCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVG 523
GLL R HGS LFTRG+TQ+L+V TLG Q +D L +E KRF Y+FPP SVG
Sbjct: 337 EVGLLARTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GVEESKRFMHHYNFPPFSVG 395
Query: 524 EVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCL 583
E AP RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+S AS+C L
Sbjct: 396 EARPPRAPGRREIGHGALGERALEPVIPSEEEFPYTIRLVSEVLESNGSTSQASICASTL 455
Query: 584 ALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGI 643
AL DAGVPIK +AG+AMG+V + D+ ILSDI G EDA GDMDFKVAG + G+
Sbjct: 456 ALMDAGVPIKAPVAGIAMGLVKEGDQI------TILSDIQGIEDALGDMDFKVAGTKKGV 509
Query: 644 TAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKP 703
TA QMDIK+ ++ ++ KAL+QA+ GR +IL +ML P LS +AP I M++ P
Sbjct: 510 TALQMDIKIDQLSKEILVKALEQARKGRLYILDKMLAVIDQPRKELSTYAPKIKTMRISP 569
Query: 704 EKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTV 763
EKI +IG G+ + II+ETGV+ ID E DG + I + D++ ++K++ +I N+ V
Sbjct: 570 EKIRDVIGPSGRMINQIIDETGVK-IDIEQDGRLYIASPDVNMIKKAQQMIENIVRDVEV 628
Query: 764 GDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVN 823
G+ Y ++K I +G FVEI PG+EGL HIS+L+ + + EDVVK+GD + VK+ E++
Sbjct: 629 GETYLG-KVKRIEKFGAFVEILPGKEGLVHISQLAEGRVNRVEDVVKIGDDILVKVTEID 687
Query: 824 DKGQLRLSRRALLPEAD 840
+ G++ LSR+ALL + +
Sbjct: 688 EHGRVNLSRKALLKDQN 704
>gi|308068706|ref|YP_003870311.1| polyribonucleotide nucleotidyltransferase [Paenibacillus polymyxa
E681]
gi|305857985|gb|ADM69773.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Paenibacillus polymyxa E681]
Length = 700
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/745 (40%), Positives = 446/745 (59%), Gaps = 57/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ G R++++ETG + +QA+ AV V+ GET++ +V + P + DFFPL VNY+ER
Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGF KREGR +L RL DRP+RP +GF ++ Q+L+ V+S D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ A+++S+VP + I GV VG V +F++NP + S L L++AG+ DAI
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKDAI 183
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E + + EE++++A+ G D ++ I ++ LV++ GK KM + ++ V
Sbjct: 184 MMVEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A E L++ ++I K R++A+ ++ E+ + E+ Y+
Sbjct: 244 RAYAAERLMEAVKIAEKHARQEAIDAVNEETVAHF-ESQYIE------------------ 284
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
TP L S DV V ++ + +RR I R D
Sbjct: 285 --------------------------TPELLS--DVSEVLYDIVKEEVRRLITHDKVRPD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRPI S +LPR HGS LFTRG+TQ+L++ TLG Q +D ++ + E KRF
Sbjct: 317 GRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLE-ETKRF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE + AP RREIGHG L ERAL V+PS+ +FPYTIR+ S + ESNG
Sbjct: 376 MHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEVLESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AGVAMG++ D D +L+DI G ED GD
Sbjct: 436 STSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------VLTDIQGMEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI +++ AL+QAK+GR IL++M++ P LS
Sbjct: 490 MDFKVAGTAEGVTAIQMDIKINGIDRQILQDALKQAKEGRLFILSKMMEAIQKPREQLSP 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG+GGK + IIEETGV+ ID E DG V I + + EK++
Sbjct: 550 YAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASTNQEMNEKAR 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+II + VG+IY +K I +G FVEI PG++GL HIS+LS+ +AK EDV+ +
Sbjct: 609 SIIEGIVKEVVVGEIYIGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDVIAI 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD + VK+ E++ +G++ LSR+A+L
Sbjct: 668 GDTITVKVTEIDQQGRVNLSRKAVL 692
>gi|357007995|ref|ZP_09072994.1| Pnp [Paenibacillus elgii B69]
Length = 700
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 442/748 (59%), Gaps = 61/748 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNY 148
V++ G R +++ETG + +QA+GAV GET++ +C +EP D FFPL VNY
Sbjct: 4 QVQMDLGGRPLILETGRLAKQANGAVVARYGETVV---LCTVTASAEPKDLDFFPLTVNY 60
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
+ER + G+ GGF KREGR + +L RL DRP+RP +GF ++ QI++ V+S D
Sbjct: 61 EERLYSVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQIVAIVMSVDQE 120
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
P+ A+ A+++S+VP + + GV VG V +F++NPT ++ E S + L++AG+
Sbjct: 121 CAPEIAAMIGTSAALSISDVPFNGPVGGVIVGRVDGQFVINPTLEQSEKSDIHLVVAGTK 180
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
DAI+M+E + + EE++++A+ G D +R+I + V+ GKPKM + ++
Sbjct: 181 DAIMMVEAGAEEVPEEVMLEAIMFGHDEIRKIVAVQEQFVQEVGKPKMEVKLHSVDSDVN 240
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ V E A LV+ ++I K R+ A+ ++ + +K+ P+ +
Sbjct: 241 QAVREFAQARLVEAVKIPEKHARQDAIDAINSE-----------AKEHFAAAYAETPEKM 289
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
DVK ++ + +RR I
Sbjct: 290 ------------------------------------ADVKEALYDIVKEEVRRLITHDKV 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IRPI LLPR HGS LFTRG+TQ+L+V TLG Q +D L+ + E
Sbjct: 314 RPDGRGLDEIRPIECDINLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLE-ES 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FPP SVGE + AP RREIGHG L ERALEPV+PS+ DFPYTIR+ S + E
Sbjct: 373 KRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALEPVIPSEVDFPYTIRLVSEVLE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGS+S AS+C LA+ DAGVPIK +AGVAMG++ D + + IL+DI G ED
Sbjct: 433 SNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEYYS------ILTDIQGMEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+TA QMDIK+ GI ++ AL+QAK GR HIL +ML P +
Sbjct: 487 LGDMDFKVAGTAKGVTALQMDIKIDGIDRAILTDALEQAKKGRMHILNKMLDRISQPKSD 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS +AP I M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + E
Sbjct: 547 LSPYAPKIVTMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASSNSEMNE 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
K++ II + VG+ Y +K I +G FVEI PG+EGL HIS+LS+ + K EDV
Sbjct: 606 KARQIIEGIVREVIVGETYLGT-VKRIEKFGAFVEILPGKEGLVHISQLSTERVGKVEDV 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALL 836
VK+GD + VK+ E++++G++ LSR+A+L
Sbjct: 665 VKIGDTITVKVTEIDNQGRVNLSRKAVL 692
>gi|375308275|ref|ZP_09773561.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus sp.
Aloe-11]
gi|375079699|gb|EHS57921.1| polynucleotide phosphorylase/polyadenylase [Paenibacillus sp.
Aloe-11]
Length = 700
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 308/745 (41%), Positives = 448/745 (60%), Gaps = 57/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ G R++++ETG + +QA+ AV V+ GET++ +V + P + DFFPL VNY+ER
Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGF KREGR +L RL DRP+RP +GF ++ Q+L+ V+S D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ A+++S+VP + I GV VG V +F++NP + + S L L++AG+ DAI
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQKTSDLYLVVAGTKDAI 183
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E D + EE++++A+ G D ++ I ++ LV++ GK KM + ++ V
Sbjct: 184 MMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDDKVNSEV 243
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A + LV+ +++ K R++A+ ++ E+ + E Y+ P+LL+D
Sbjct: 244 RAYAADRLVEAVKVAEKHARQEAIDAINEETVAHF-EAQYIET----------PELLKD- 291
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
SEV +V +EV RR I R D
Sbjct: 292 ------------------------------VSEVLYDIVKEEV-----RRLITHDKVRPD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRPI S +LPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E KRF
Sbjct: 317 GRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETKRF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE + AP RREIGHG L ERAL V+PS+ +FPYTIR+ S + ESNG
Sbjct: 376 MHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEVLESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AGVAMG++ D D +L+DI G ED GD
Sbjct: 436 STSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------VLTDIQGMEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI +++ AL+QA++GR IL +M++ P LS
Sbjct: 490 MDFKVAGTAEGVTAIQMDIKIDGIDREILQDALKQAREGRLFILGKMMEAIQKPREQLSP 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG+GGK + IIEETGV+ ID E DG V I + + EK++
Sbjct: 550 YAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASTNQEMNEKAR 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+II + VG+IY +K I +G FVEI PG++GL HIS+LS+ +AK EDVV +
Sbjct: 609 SIIEGIVKEVVVGEIYIGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDVVAI 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD + VK+ E++ +G++ LSR+A+L
Sbjct: 668 GDTITVKVTEIDQQGRVNLSRKAVL 692
>gi|149182492|ref|ZP_01860966.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
gi|148849823|gb|EDL63999.1| polynucleotide phosphorylase/polyadenylase [Bacillus sp. SG-1]
Length = 706
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 303/745 (40%), Positives = 442/745 (59%), Gaps = 58/745 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R++ VE G + +QA+GAV + G+T + ++ + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRKLTVEYGQLAKQANGAVMIRYGDTAVLSTATASKQP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + VL RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSERAVLTSRLIDRPIRPLFADGFRNEVQVISMVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV+VGL+ +FI+NP ++E S+++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALTVSDIPFEGPIAGVQVGLIDGEFIINPNVDQLEKSEINLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + + + GK KM + ++ V
Sbjct: 189 VEAGADEVPEETMLEAIMFGHEEIKRLISFQEEIAAQVGKEKMEVELYQIDQDIEAEVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I E+++K +Q++ K R A+ +++ V+ E
Sbjct: 249 ICEEDMIKAIQVQEKHAREAAIKEVKDDVIAKFEEK------------------------ 284
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E DE + VK V ++ +RR I E R DGR
Sbjct: 285 --------EADEAQLK----------------QVKQVLDKLVKGEVRRLITEEKLRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S+ GLLPR HGS LFTRG+TQ+L++ TLG Q ID L +E KRF
Sbjct: 321 GLDEIRPLASQVGLLPRTHGSGLFTRGQTQALSICTLGAMGDVQVIDGL-GLEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G I P RREIGHG L ERALEP++P++ DFPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPLFSVGETGPIRGPGRREIGHGALGERALEPIIPNEKDFPYTIRIVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG++ + + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLIQSGEHYS------ILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML + LS++A
Sbjct: 494 FKVAGTAKGVTALQMDIKIEGLSREILEEALQQAKSGRMHILDSMLSTISESRSKLSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DG+V I++ D +K+K I
Sbjct: 554 PKILTMHINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGSVFISSTDEEMNKKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVV +GD
Sbjct: 613 IEDIVREVEVGQLYLG-KVKRIEKFGAFVEIFNGKDGLVHISELAEERIGKVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPE 838
+ VK+ E++ +G++ LSR+A+L E
Sbjct: 672 ELLVKVTEIDRQGRVNLSRKAVLKE 696
>gi|373496308|ref|ZP_09586856.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 12_1B]
gi|404368897|ref|ZP_10974244.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
ATCC 49185]
gi|313688190|gb|EFS25025.1| polyribonucleotide nucleotidyltransferase [Fusobacterium ulcerans
ATCC 49185]
gi|371966219|gb|EHO83711.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp. 12_1B]
Length = 699
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/744 (42%), Positives = 447/744 (60%), Gaps = 51/744 (6%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ R + TG + RQ+ GAV V GET++ ++V + P + +DFFPL V+Y E+
Sbjct: 7 VELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F AAG+ GGF KREGR + L RLIDRP+RP +GF H+ I++ V SYD + P
Sbjct: 67 FYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L + + +A+ LS++P +AGV VG +FI+NPT +E+E S L+L +AGS DA+
Sbjct: 127 DYLGIIGSSMALMLSDLPFLGPVAGVVVGYKDGEFILNPTPEELETSDLELSVAGSKDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
M+E L EE ++ A+ + +++I + ++ GK K+ K P + +
Sbjct: 187 NMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKIDFVKKEVLPLVKDFI 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+E E L + K R +A+ SLEE+++ Y + +E+E
Sbjct: 247 DEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENY--------------EGIEEE 292
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D EEV+ GE K + ++ K +R I+ R D
Sbjct: 293 DIPEEVI--GE------------------------FKGYYHDLMKKLVREAILYHKHRVD 326
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRP+ + G+LP HGSA+FTRGETQ++ V TLG K+ Q +D+LE + K+F
Sbjct: 327 GRKTTEIRPLFAEVGVLPIPHGSAMFTRGETQAVVVTTLGTKEDEQLVDDLEK-EYFKKF 385
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
YL Y+FPP SVGE GR+G+P RRE+GHG+LAERAL V+PS+ FPYTIRV S ITESNG
Sbjct: 386 YLHYNFPPYSVGETGRMGSPGRRELGHGSLAERALSYVIPSEESFPYTIRVVSEITESNG 445
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSS AS+CGG L+L AGVPIK +AG+AMG++ + +EF +L+DI G ED GD
Sbjct: 446 SSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEF------TVLTDIMGLEDHLGD 499
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG ++GITA QMDIK+ GIT +M+ AL+QA D R IL M P++ L
Sbjct: 500 MDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDARNEILVVMNNAISAPAD-LRP 558
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+ P IH MK+ +KI +IG GGK +K IIE+TG ID DDG V I +KD L+++
Sbjct: 559 NVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTGA-TIDISDDGNVSIFSKDEEVLKETI 617
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+++ VG+IY N + +IA +G F+EI PG+EGL H+SE+S+ +A EDV+KV
Sbjct: 618 TLVNAFVKDVEVGEIY-NGRVVNIAKFGAFMEILPGKEGLLHVSEISNERVANVEDVLKV 676
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD DVK+I + G++ LS++ +
Sbjct: 677 GDRFDVKVIS-TENGKISLSKKKI 699
>gi|340361931|ref|ZP_08684338.1| polyribonucleotide nucleotidyltransferase [Neisseria macacae ATCC
33926]
gi|339888028|gb|EGQ77523.1| polyribonucleotide nucleotidyltransferase [Neisseria macacae ATCC
33926]
Length = 706
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 439/743 (59%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ S+LDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSKLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+ D L E+
Sbjct: 249 IAGEAIKEAFKIRQKQARSAKL-------------------DEAWNAVK---DALITEET 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK + + +R +I++G R DGR
Sbjct: 287 D--------------------------TLAANEIKGIFKHLEADVVRTQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAKD R HIL E +K + LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKDARLHIL-EQMKAAVAGPQELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
+V+VK +EV+D+G++RLS +AL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKAL 694
>gi|294624709|ref|ZP_06703376.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665176|ref|ZP_06730476.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600982|gb|EFF45052.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605040|gb|EFF48391.1| polynucleotide phosphorylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 704
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/742 (41%), Positives = 446/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
D LSEE+++ AV G ++++ N + L VE KP D + + + ++E
Sbjct: 190 SEADLLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPS--DWVAPAKNDGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLAKEFGELEYQTMRGSVLSTKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS+ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+P+ +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|311068192|ref|YP_003973115.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|419823827|ref|ZP_14347361.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
gi|310868709|gb|ADP32184.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
1942]
gi|388472066|gb|EIM08855.1| polynucleotide phosphorylase/polyadenylase [Bacillus atrophaeus
C89]
Length = 705
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R++ VETG + +QA+GAV + G+T + +S + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRKLTVETGQLAKQANGAVMIRYGDTAVLSSATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V ++FI+NPT ++E S + L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRVDNQFIINPTVDQLEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + +V GK K + EL V+
Sbjct: 189 VEAGADEVPEETMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLYEIDAELSDKVKA 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E+L+K +Q+ K R A++ ++ N V+K E+E+
Sbjct: 249 LAEEDLLKAIQVHEKHAREDAINEVK---------NTVVAK-------------FEEEEH 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D++++ K S KLV EV RR I E R DGR
Sbjct: 287 DDDII-----------------KQVKQTLS----KLVKNEV-----RRLITEEKVRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 GVDQIRPLSSEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDALGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR IL+ ML LS++A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKKGRMEILSSMLNTLGEARKELSQYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ D S+ +K+K I
Sbjct: 554 PKILTMAINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTDESNNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +L VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDLVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+ E++ +G++ LSR+A+L
Sbjct: 672 ELLVKVTEIDKQGRVNLSRKAVL 694
>gi|51594836|ref|YP_069027.1| polynucleotide phosphorylase [Yersinia pseudotuberculosis IP 32953]
gi|186893845|ref|YP_001870957.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis PB1/+]
gi|81640532|sp|Q66F56.1|PNP_YERPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704836|sp|B2K2Q9.1|PNP_YERPB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51588118|emb|CAH19724.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 32953]
gi|186696871|gb|ACC87500.1| 3' exoribonuclease [Yersinia pseudotuberculosis PB1/+]
Length = 704
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 317/755 (41%), Positives = 439/755 (58%), Gaps = 61/755 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSEE ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWQAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L V +R R++ G
Sbjct: 297 L-------------------------------------------ASVEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADA 841
+++G V VK++EV+ +G++RLS + A P+A+A
Sbjct: 665 YLQMGQDVPVKVMEVDRQGRIRLSIKEATTPDAEA 699
>gi|85706001|ref|ZP_01037097.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
gi|85669589|gb|EAQ24454.1| polyribonucleotide nucleotidyltransferase [Roseovarius sp. 217]
Length = 713
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 317/751 (42%), Positives = 434/751 (57%), Gaps = 73/751 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQER+
Sbjct: 9 MQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQERYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF HET ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHETLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ A A+ +S P IAG RVG V ++I+NP +M + +LDL++AG+
Sbjct: 129 VAMIATSAALTISGAPFMGPIAGCRVGFVDGEYILNPEIDDMHNLRNNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP-- 325
DA++M+E L+EE ++ AV + ++ + + + +L E C K + PP
Sbjct: 189 KDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVCDLIISLAEDCAK----EPFNFTPPDY 244
Query: 326 -ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
ELY V+ E++ I++K R A+S+ E + LSE DE +G
Sbjct: 245 SELYAAVKAAGAEQMHAAFAIRDKQERTHAISAAREAIKAKLSEEQLA--DENLGSA--- 299
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
FK++ S LR +V
Sbjct: 300 ----------------------------------------------FKKLESSVLRGDVV 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G R DGR D IR I GLLPR HGS+LFTRGETQ+L V TLG Q ID L
Sbjct: 314 KNGNRIDGRRLDEIRSIVCETGLLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G P RREIGHG LA RAL+ VLP DFPYTIR+ S
Sbjct: 374 NFK-SNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K S+AGVAMG+VL+ DG+ ILSDI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKTSVAGVAMGLVLEE-----DGSFAILSDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG DGIT+ QMDIKV GIT +MKKAL+QAK GR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTADGITSLQMDIKVAGITPEIMKKALEQAKAGRLHILGEMDKALSG 547
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D D+G +KI + +
Sbjct: 548 AAE-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKIASPNG 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
S++K+ +I ++ P G +Y + ++ + +G FV R+GL H+S++ + L
Sbjct: 606 ESIKKAYDMIWSIVAEPEEGKVY-DGKVVKLVDFGAFVNFFGKRDGLVHVSQIENRRLNH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DV+K G V VKL+ +D+G++RLS + +
Sbjct: 665 PSDVLKEGQDVKVKLLGFDDRGKVRLSMKVV 695
>gi|325921391|ref|ZP_08183248.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas gardneri ATCC 19865]
gi|325548149|gb|EGD19146.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas gardneri ATCC 19865]
Length = 704
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/743 (42%), Positives = 446/743 (60%), Gaps = 62/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE--LYKHVE 332
LSEE+++ AV G ++++ N + L VE KP T P L ++
Sbjct: 190 SEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKP---STWVAPAKNTALINALK 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E G +L Q+++K+ RR A+S++++ VL L+ G V+
Sbjct: 247 EAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLA--GRVA------------------- 285
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
EG +S ++ F E+ +R ++E R DG
Sbjct: 286 -----------SEG---------------WSSAELSKEFGELEYHTMRDSVLETKVRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + S + + F
Sbjct: 320 RALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAV-SGEYKENFL 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGS
Sbjct: 379 FHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCG LAL DAGVP+K +AG+AMG+V + D F ++LSDI G ED GDM
Sbjct: 439 SSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRF------VVLSDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR +IL EM K P LS +
Sbjct: 493 DFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSKALTTPRLELSDY 552
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 553 APRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKS 611
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K G
Sbjct: 612 RIEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEG 670
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
DLV VK++EV+ +G++RLS +A+
Sbjct: 671 DLVRVKVLEVDKQGRIRLSIKAV 693
>gi|310641602|ref|YP_003946360.1| polynucleotide phosphorylase [Paenibacillus polymyxa SC2]
gi|386040628|ref|YP_005959582.1| polynucleotide phosphorylase [Paenibacillus polymyxa M1]
gi|309246552|gb|ADO56119.1| Polynucleotide phosphorylase/polyadenylase [Paenibacillus polymyxa
SC2]
gi|343096666|emb|CCC84875.1| polynucleotide phosphorylase [Paenibacillus polymyxa M1]
Length = 700
Score = 550 bits (1418), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/745 (40%), Positives = 444/745 (59%), Gaps = 57/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ G R++++ETG + +QA+ AV V+ GET++ +V + P + DFFPL VNY+ER
Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASREPKD-LDFFPLTVNYEER 63
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGF KREGR +L RL DRP+RP +GF ++ Q+L+ V+S D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ A+++S+VP + I GV VG V +F++NP + S L L++AG+ DAI
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVNGQFVINPDIAQQNTSDLYLVVAGTKDAI 183
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E D + EE++++A+ G D ++ I ++ LV++ GK KM + ++ V
Sbjct: 184 MMVEAEGDEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A + LV+ ++I K R++A+ ++ E+ + E Y+
Sbjct: 244 RAYAADRLVEAVKIAEKHARQEAIDAVNEETVAHF-EAQYIE------------------ 284
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
TP L S DV V ++ + +RR I R D
Sbjct: 285 --------------------------TPELLS--DVSEVLYDIVKEEVRRLITHDKVRPD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRPI S +LPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E KRF
Sbjct: 317 GRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETKRF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE + AP RREIGHG L ERAL V+PS+ +FPYTIR+ S + ESNG
Sbjct: 376 MHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEVLESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AGVAMG++ D D +L+DI G ED GD
Sbjct: 436 STSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHVS------VLTDIQGMEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI +++ AL+QA++GR IL +M++ P LS
Sbjct: 490 MDFKVAGTAEGVTAIQMDIKIDGIDRNILQDALKQAREGRLFILGKMMEAIQKPREQLSP 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG+GGK + IIEETGV+ ID E DG V I + + EK++
Sbjct: 550 YAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASTNQEMNEKAR 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+II + VG+IY +K I +G FVEI PG++GL HIS+LS+ +AK EDV+ +
Sbjct: 609 SIIEGIVKEVVVGEIYIGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDVIAI 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD + VK+ E++ +G++ LSR+A+L
Sbjct: 668 GDTITVKVTEIDQQGRVNLSRKAVL 692
>gi|421542166|ref|ZP_15988276.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM255]
gi|402318102|gb|EJU53627.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM255]
Length = 706
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++LD ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|329120747|ref|ZP_08249409.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
ATCC BAA-1200]
gi|327460544|gb|EGF06880.1| polyribonucleotide nucleotidyltransferase [Neisseria bacilliformis
ATCC BAA-1200]
Length = 701
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 443/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + + +ETG + RQA+GAV V G+T++ +V DFFPL V+Y ER AA
Sbjct: 11 YGSQTVTLETGEIARQAAGAVKVAMGDTVVLVAVTANKEVKAGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT ++E SQLDL++AG++ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYVDGGYVLNPTKTQLEKSQLDLVVAGTEQAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G + ++ + + L + P++ D K P P EL V+E
Sbjct: 191 SEAQILPEDVMLGAVVYGHEQMQAVIRAINELADEV-NPEVWDW-KAPEPNAELIAKVKE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAG+ + + +I++K R ++ V L + ED D
Sbjct: 249 IAGDTIAEAFKIRSKQARGAKIAEAWAAVQAAL--------------------ITEDTDT 288
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+ ++K +FK + + +R +I++G R DGR
Sbjct: 289 ----------------------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + +LPR HGSALFTRGETQ+LAV TLG ++ Q ID L S + RF L
Sbjct: 321 DTRTVRPINIQTNVLPRTHGSALFTRGETQALAVTTLGTQRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GE GR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGECGRMGAPKRREIGHGRLAKRALLAVLPEPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG DG+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M + P LS+HA
Sbjct: 494 FKVAGTTDGVTALQMDIKIQGITKEIMQIALAQAKEARLHILGQMKEAVQGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++++ ETG E I+ EDDGT+ I A ++E ++
Sbjct: 553 PRLFTMKINQDKIRDVIGKGGETIRALTAETGTE-INIEDDGTITIAAVSADAVEAARKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V++ PG+ GL HIS+++ + D +KVG
Sbjct: 612 IEEITAEVEVGKVYDGTVVKILDNNVGAIVDVLPGKGGLVHISQIAHERVKDVNDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V VK +EV+D+G++RLS +AL+
Sbjct: 672 QVVKVKALEVDDRGRVRLSIKALI 695
>gi|406938480|gb|EKD71703.1| hypothetical protein ACD_46C00120G0005 [uncultured bacterium]
Length = 699
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 451/744 (60%), Gaps = 55/744 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV VT +T++ ++ D SE DFFPL VNYQER AA
Sbjct: 10 YGNHDVTLETGAIARQATSAVMVTMDDTVVLVTLVCKDSASEDKDFFPLTVNYQERTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GG+FKREG+ + E L RLIDRPLRP KGF E Q+++ VLS + D A
Sbjct: 70 GRIPGGYFKREGKPSEKETLTSRLIDRPLRPLFPKGFNFEVQVIATVLSMNPEVDSDIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A AVALS +P + +A +VG +I+NPT +++ S+L++++AG+++A+LM+E
Sbjct: 130 MLGAAAAVALSGLPATSHLAAAKVGYQDGNYILNPTIPQLDTSELNMVVAGTENAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSE +++ AV ++ + N +K +V G K + + +L K +
Sbjct: 190 SEAKELSESVMLGAVMFAHREMQTVINIIKEMVTESGVTKWDWSPQTIKSDLQKRAHDFC 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGIVETIPDLLEDEDED 394
++ K QI++K R++A+S + ++V+ +L+EN VSK ED
Sbjct: 250 KADVEKAYQIRDKQERQQAISDIRDRVVEQMLTEN--VSK------------------ED 289
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
E + E D+K +F + S +R RI++G R DGR
Sbjct: 290 EATL-------------------------EQDIKYIFAHLESDVVRSRILQGQPRIDGRD 324
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPIS + G+LPR HGSA+FTRGETQ++ V TLG ++ AQ ID LE + + F L
Sbjct: 325 TKTVRPISIQTGMLPRTHGSAVFTRGETQAIVVATLGTERDAQVIDALEGERK-DTFMLH 383
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGEVG +G+P RREIGHG LA+R++ +LP DF Y IR+ S ITESNGSSS
Sbjct: 384 YNFPPFSVGEVGMVGSPKRREIGHGNLAKRSVSAILPEQKDFNYVIRIVSEITESNGSSS 443
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCG LAL DAGVPIK +AGVAMG+V + D+F +L+DI G ED GDMDF
Sbjct: 444 MATVCGSSLALMDAGVPIKSHVAGVAMGLVKEGDQFA------VLTDILGDEDHLGDMDF 497
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG G+TA QMDIK+ GIT +M KAL+QA+DGR HIL M + P +S +AP
Sbjct: 498 KVAGTTTGVTALQMDIKIDGITEAIMNKALEQARDGRMHILGIMNQTINMPRQEMSAYAP 557
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I M++ P+KI +IG GG ++++ EETG +D DDG VK+ A DL++ E++ I
Sbjct: 558 RILSMRIPPDKIRDVIGKGGVTIRALTEETGT-VVDISDDGAVKVAAADLAACEEAIRRI 616
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
LT VG IY + + +G V I PG++GL HIS++++ +A+ D + G +
Sbjct: 617 ERLTADVVVGSIYEGT-VTKLMDFGALVAILPGKQGLVHISQIANERIAQVSDKLAEGQV 675
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE 838
V VK++E++ +G++RLS + ++ E
Sbjct: 676 VRVKVLEIDRQGRIRLSMKEVVSE 699
>gi|404378814|ref|ZP_10983893.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
Length = 703
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 315/752 (41%), Positives = 448/752 (59%), Gaps = 64/752 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++Q+ +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQQVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLTVDYFERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKRE + + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKRESKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVISCDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + D +++NPT +M SQLDL++AG++ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYINDTYVLNPTKHQMHRSQLDLVVAGTESAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
+ L E++++ AV G + ++ + + L M P++ D K P +L +++
Sbjct: 191 SEANILPEDVMLGAVVYGHEQMQTVIAAINELASMV-NPELWDW-KAPETNNDLVAKIKD 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I+G + + +I++K R L DE VE L+ +E +
Sbjct: 249 ISGSLIAEAFKIRSKQARSAKL-------------------DEAWAAVEAA--LITEETD 287
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
++ ++K +FK + ++ +R +I+ G R DGR
Sbjct: 288 T---------------------------LAKNEIKGIFKHLEAEVVRGQILAGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPINIQTNVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALVAVLPKPEDFNYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AGVAMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS+HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQAAVEGP-QELSQHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ MK+ P+KI +IG GG+ +++I ET E I+ DDG V I A + E +KA
Sbjct: 553 PRLYTMKINPDKIREVIGKGGETIRAITAETNTE-INIADDGVVTIAATTAEAGEAAKAR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V I PG++GL HIS+++ + D ++VG
Sbjct: 612 IEMITAEVEVGKVYEGQVVKLLDNNVGAIVTIMPGKDGLVHISQITHERVKNVSDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL--PEADAE 842
V VK +EV+++G++RLS +ALL PE AE
Sbjct: 672 QTVTVKALEVDERGRVRLSMKALLEQPEQQAE 703
>gi|365836772|ref|ZP_09378159.1| polyribonucleotide nucleotidyltransferase [Hafnia alvei ATCC 51873]
gi|364563454|gb|EHM41263.1| polyribonucleotide nucleotidyltransferase [Hafnia alvei ATCC 51873]
Length = 704
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/755 (41%), Positives = 443/755 (58%), Gaps = 59/755 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV VT +T ++ +V A E FFPL VN
Sbjct: 3 NPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E LSE+ ++ AV G D + + +KAL GKP+ T L
Sbjct: 183 EGAVLMVESEAQLLSEDQMLGAVVFGHDQQQVVIENIKALAAEAGKPRWEWTAPAVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V +A + I K R + ++ V+ L ++DE++
Sbjct: 243 HARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAALQ-----AEDESLNA------- 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
GE+ + V + +R R++ G
Sbjct: 291 -------------GEIAD------------------------VLGSLEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L + ++
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDGL-TGEQ 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P ++FPYT+RV S IT
Sbjct: 373 TDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ PEKI +IG GG ++++ +ETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTVKIAATDNEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADA 841
+++G V VK++EV+ +G++RLS + A PE A
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLSIKEASAPEQAA 699
>gi|94497007|ref|ZP_01303581.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
gi|94423683|gb|EAT08710.1| Polyribonucleotide nucleotidyltransferase [Sphingomonas sp. SKA58]
Length = 778
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/751 (40%), Positives = 441/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I + + +ETG + RQA AV T GET++ +V A + DFFPL V+YQE+
Sbjct: 14 VSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKDGQDFFPLTVHYQEK 73
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ VLS+DG P
Sbjct: 74 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSFDGESEP 133
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I RVG ++ +NP+ +E ++ LDL++A + +A+
Sbjct: 134 DIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLEEAKEGDLDLVVAATGNAV 193
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSE++++ AV DA +++ N + L E K + L K +
Sbjct: 194 MMVESEAKELSEDVMLGAVMFAHDAAKKVVNAIIDLAEQAAKDPWEMAAQDDLGGLKKKL 253
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
++ G+++ ++ +K R AL+ K +E E
Sbjct: 254 TKLIGKDIAAAYKLTDKSARSNALNEARAKAKAFFAE----------------------E 291
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ D + V+ G +KL K++ ++ +R I++ G+R D
Sbjct: 292 ELDAQTVMAG-------------------------IKLT-KKLEAEIVRTAILKDGQRID 325
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + + F
Sbjct: 326 GRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLHYENF 384
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS ++FPYTIRV S ITESNG
Sbjct: 385 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTIRVLSDITESNG 444
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ ++ ++SDI G ED GD
Sbjct: 445 SSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYA------VISDILGDEDHLGD 498
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E+GIT QMDIKV GIT + + AL+QAK+GR HIL EM K LS
Sbjct: 499 MDFKVAGTENGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKALSSTRTELSA 558
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D + +E +K
Sbjct: 559 HAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGIIKISSSDTAQIEAAK 617
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG IY + ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 618 KWILGIVEEAEVGKIY-SGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVVSE 676
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E E
Sbjct: 677 GQEVKVKVLEIDPRGKVRLSMRVVDQETGEE 707
>gi|374323518|ref|YP_005076647.1| polyribonucleotide nucleotidyltransferase [Paenibacillus terrae
HPL-003]
gi|357202527|gb|AET60424.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Paenibacillus terrae HPL-003]
Length = 700
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 308/745 (41%), Positives = 449/745 (60%), Gaps = 57/745 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ G R++++ETG + +QA+ AV V+ GET++ +V ++ P + DFFPL VNY+ER
Sbjct: 5 VEMQLGGRKLVLETGRLAKQANAAVKVSYGETVVLCTVTASNAPKD-LDFFPLTVNYEER 63
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGF KREGR +L RL DRP+RP +GF ++ Q+L+ V+S D P
Sbjct: 64 LYAVGKIPGGFIKREGRPSQKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCEP 123
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ A+++S+VP + I GV VG V +F++NP + S L L++AG+ DAI
Sbjct: 124 EIAAMIGTSAALSISDVPFNGPIGGVAVGRVDGQFVINPDIAQQNASDLYLVVAGTKDAI 183
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E + + EE++++A+ G D ++ I ++ LV++ GK KM + ++ V
Sbjct: 184 MMVEAEGNEIPEEVMLEAIMFGHDEIKNIVAVIEQLVQVAGKEKMQVKLHAVDEKVNSEV 243
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A E LV+ ++I K R++A+ ++ E+ + V +ET P+LL+D
Sbjct: 244 RSYAAERLVEAVKIVEKHARQEAIDAVNEETVAHFE----------VQYIET-PELLKD- 291
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
SEV +V +EV RR I R D
Sbjct: 292 ------------------------------VSEVLYDIVKEEV-----RRLITHDKVRPD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRPI S +LPR HGS LFTRG+TQ+L+V TLG Q +D ++ + E KRF
Sbjct: 317 GRKLDEIRPIESDTSILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGIDLE-ETKRF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE + AP RREIGHG L ERAL V+PS+ +FPYTIR+ S + ESNG
Sbjct: 376 MHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEVLESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AGVAMG++ D + +L+DI G ED GD
Sbjct: 436 STSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVS------VLTDIQGMEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI +++ AL QA++GR IL++M++ P LS
Sbjct: 490 MDFKVAGTAEGVTAIQMDIKINGIDRQILQDALNQAREGRLFILSKMMEAIQTPREQLSP 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG+GGK + IIEETGV+ ID E DG V I + + EK++
Sbjct: 550 YAPKIMTMHINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVFIASTNQEMNEKAR 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+II + +G+IY +K I +G FVEI PG++GL HIS+LS+ +AK EDVV +
Sbjct: 609 SIIEGIVKEVVIGEIYIGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDVVAI 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD + VK+ E++ +G++ LSR+A+L
Sbjct: 668 GDTITVKVTEIDQQGRVNLSRKAVL 692
>gi|406898684|gb|EKD42186.1| hypothetical protein ACD_73C00279G0005 [uncultured bacterium]
Length = 695
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/745 (42%), Positives = 451/745 (60%), Gaps = 58/745 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
QP V G R++++ETG + +QA G+VTV G+TI+ + + P E DF PL V+
Sbjct: 3 QPQRVSAQLGGREVIIETGKLAKQAGGSVTVQCGDTIVLVTSTASAKPKEGIDFLPLTVD 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
+ E+ AAG+ GGFFKREGR + L R IDRP+RP G+ +ETQ+++ VLS D
Sbjct: 63 FIEKTFAAGKIPGGFFKREGRPTELATLTSRFIDRPIRPLFPVGYSNETQVIATVLSVDC 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ PD LA+ A ++ +S +P K IAG RVG VG F++N T EMEDS +DL++A S
Sbjct: 123 VNDPDTLAMIGASASLMISNIPFLKPIAGCRVGRVGGNFVINATEVEMEDSDIDLIVAAS 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+DA++M+EG D + E+ +I+A++ +A++ + K L CGKPK+ + +PP +
Sbjct: 183 EDAVVMVEGGGDEVGEKDMIEAIKYAHNALKPLIQIQKDLAAKCGKPKI---VVVPPQK- 238
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+EL+ K L+++E +V + +
Sbjct: 239 ---------DELI-----------LKELAAVESQVAVAMK-------------------I 259
Query: 388 LEDEDEDEEVVVDGEV-DEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
E D ++ GE+ D + P+ + P + D + ++EV S+ +R I+
Sbjct: 260 AEKHDRYTKL---GEIKDAVKAKVFPEGTEVAPSKKVQFDNE--YEEVKSRVMRHMILND 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR IRPI+S GLLPRAHGSALFTRGETQ+L V TLG + AQ ID +
Sbjct: 315 KVRIDGRDMVSIRPIASEVGLLPRAHGSALFTRGETQALVVATLGSEDDAQMIDAMTGTY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ K F L Y+FPP SVGEV + +P RRE+GHG LAER++ +LP+ FPYTIR+ S I
Sbjct: 375 D-KHFLLHYNFPPFSVGEVKPLRSPGRREVGHGALAERSIARMLPAHEAFPYTIRIVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
ESNGSSSMA+VCGG L+L DAGVPIK +AG+AMG++++ ++ ILSDI G E
Sbjct: 434 LESNGSSSMATVCGGSLSLMDAGVPIKAPVAGIAMGLIMEGEKVA------ILSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+ G+TA QMDIKV G++ ++ AL+QA+ GR HIL +M + P
Sbjct: 488 DHLGDMDFKVAGSAKGVTALQMDIKVEGVSETILTNALEQARVGRLHILGKMAEALSTPR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
S+SK+AP I +K+ PEKI +IGSGGK +K IIE+T V+ ID ED G V+I
Sbjct: 548 ESMSKYAPKIITIKINPEKIRDVIGSGGKNIKGIIEQTNVK-IDIEDTGHVRIFGSIDED 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ ++ ++ + T VG IY +K I +G FVEI P +GL HIS++S + +
Sbjct: 607 INRAIELVKSYTAEAEVGKIYEGV-VKKIMEFGAFVEILPKTDGLVHISQISHERIKQVG 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLS 831
DV+K GD V VK I ++++G+++LS
Sbjct: 666 DVLKEGDKVRVKCIGLDERGKIKLS 690
>gi|300721542|ref|YP_003710817.1| polynucleotide phosphorylase [Xenorhabdus nematophila ATCC 19061]
gi|297628034|emb|CBJ88583.1| polynucleotide phosphorylase, has polyadenylase activity
[Xenorhabdus nematophila ATCC 19061]
Length = 712
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/754 (41%), Positives = 446/754 (59%), Gaps = 56/754 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTIETGMMARQATAAVMVNMDDTAVFVTVVGQKKMKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E LV RLIDRPLRP +GF +E QI++ V+S +
Sbjct: 63 YQERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEVQIIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+ALS +P + I RVG + D++++NPT+ E+++S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + L+E+ ++ AV G + + + + +L GK K + L
Sbjct: 183 ESAVLMVESEAELLTEDQMLGAVVFGHEQQQIVIENINSLAAEAGKEKWDWAPEPINQSL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKV-LTILSENGYVSKDETVGIVETIPD 386
+ V E+A L +I K R ++ ++E+V + IL+E S ++ V
Sbjct: 243 HDRVAELAESRLGDAYRITEKQERYAQVNIIKEEVSVVILAE----SAEKGV-------- 290
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
E++EG+V +D + +R R++ G
Sbjct: 291 ---------------ELEEGEV----------------LDA---LSGLEKNVVRGRVLSG 316
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 317 EPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVAATLGTERDAQVIDELMGE- 375
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S I
Sbjct: 376 RTDRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASEFPYTVRVVSEI 435
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G E
Sbjct: 436 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDE 489
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL+ M + P
Sbjct: 490 DHLGDMDFKVAGSRDGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQAIESPR 549
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
N +S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 550 NDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDK 608
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 609 ARHAISRIEEITAEVEVGRIY-TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 667
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D ++VG V VK++E++ +G++RLS + + D
Sbjct: 668 DYLQVGQEVPVKVLEIDRQGRIRLSMKEAVATTD 701
>gi|85058359|ref|YP_454061.1| polynucleotide phosphorylase/polyadenylase [Sodalis glossinidius
str. 'morsitans']
gi|123725447|sp|Q2NW19.1|PNP_SODGM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|84778879|dbj|BAE73656.1| polyribonucleotide nucleotidyltransferase [Sodalis glossinidius
str. 'morsitans']
Length = 705
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/758 (40%), Positives = 437/758 (57%), Gaps = 59/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G +ETG M RQA+ AV + +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTFTLETGMMARQATAAVMASMDDTAVFVTVVGAKQAKTGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E +++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVHVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P S I RVG + D++++NPT E+ S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTQAELATSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E LSE+ ++ AV G D + + + + LV GKPK + L
Sbjct: 183 QNAVLMVESEAQLLSEDQMLGAVVYGHDQQQIVIDNINQLVAEAGKPKWQWQAQDVNAGL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+A L +I K R A+ +++ V+ L+ +DET+ + E
Sbjct: 243 QARVAELAESRLGDSYRITEKQERYAAVDAIKADVVEALT-----GQDETLDVGE----- 292
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+K + + +R R++ G
Sbjct: 293 ---------------------------------------IKDILGALEKSVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L + +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL-TGER 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S IT
Sbjct: 373 TDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNASEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +G+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGVTALQMDIKIEGITHEIMQVALNQAKGARMHILGVMERAISSPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
++S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVK+ A D
Sbjct: 547 NISEFAPRIHTIKISSDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKVAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ I +T VG IY N ++ I +G F I G+EGL HIS+++ + K D
Sbjct: 606 RHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFFAIGGGKEGLVHISQIADKRVEKVAD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + A P DA P
Sbjct: 665 YLELGQEVPVKVLEVDRQGRVRLSIKEASAPSQDAVVP 702
>gi|421482590|ref|ZP_15930170.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
piechaudii HLE]
gi|400198901|gb|EJO31857.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
piechaudii HLE]
Length = 720
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 321/773 (41%), Positives = 448/773 (57%), Gaps = 67/773 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G +++ETG + RQASGAV V+ +T++ +V + FFPL V+Y
Sbjct: 5 VTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRPLRP + FY+E Q++ LS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P + I RVG + ++ +NPT +++ S+LDL++AG+++
Sbjct: 125 DPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYALNPTASQLKSSKLDLVVAGTEN 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSEE+++ V G + ++ + N + LV+ GKP L
Sbjct: 185 AVLMVESEAQQLSEEIMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQAPAKDEALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPR----RKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
V A E L QI+ K R R+ + + K+ +E G E++P
Sbjct: 245 AVTSAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKG-----------ESLP 293
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
D V VD ++FS + S +R +I+
Sbjct: 294 D---------AVTVDN------------------IMFS----------LESAIVRGQILN 316
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR +RPIS R G+LPRAHGSALFTRGETQ+L V TLG KQ Q ID L +
Sbjct: 317 GEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGE 376
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
RF + Y+ PP + GE GRIG P RREIGHG LA+R+L P+LP+ DF YTIR+ S
Sbjct: 377 YR-DRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLLPAPEDFQYTIRIVSE 435
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCGG LA+ DAGVP+K +AGVAMG++LD +F +L+DI G
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFA------VLTDILGD 489
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG E+G+TA QMDIK+ GIT +M+ AL QA++GR HIL +M +
Sbjct: 490 EDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILTKMKEALDGS 549
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS AP + +K+ PEKI +IG GG ++++ EETG + ID DDGT+ I + D +
Sbjct: 550 RGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQ-IDISDDGTIVIASVDEA 608
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
++++ I LT VG IY ++ + +G V++ PGR+GL HISE+++ +A
Sbjct: 609 QAKEAQRRIVELTADVEVGQIYEGSVLR-LLDFGAIVQVLPGRDGLLHISEIANYRIANI 667
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL------LPEADAENPPVKLPTGD 852
DV+KVG V VK+IE +DKG+LRLS +A+ P A E P P +
Sbjct: 668 NDVLKVGQQVRVKVIEADDKGRLRLSIKAIGGIEAQQPAAATEAAPQSEPQAE 720
>gi|415924064|ref|ZP_11554830.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
gi|407760420|gb|EKF69718.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
Length = 711
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/756 (40%), Positives = 446/756 (58%), Gaps = 53/756 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
VS +G Q+ +ETG + RQASGAV V+ +T+I +V DFFPL V+Y
Sbjct: 5 VSKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRP+RP +G+ +E Q++ VLS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A++L+ +P + + RV + ++++NPT +++ SQLDL++AG++
Sbjct: 125 DPDIPAMIGASAALSLAGIPFNGPVGAARVAYIDGQYVLNPTQTQLKSSQLDLVVAGTET 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E D LSEE+++ AV G D + + + ALV GKP++ T L
Sbjct: 185 AVLMVESEADQLSEEVMLGAVVFGHDQSKAVIEAIHALVRDGGKPEVQWTAPAKNEALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V ++A L + Q K+K R + L ++ +V
Sbjct: 245 RVSQLAEGPLREAYQTKDKQARTEKLKAVSAQV--------------------------- 277
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+E +V + + G + + + +LF ++ +K +R +I+EG R
Sbjct: 278 ----NEALVAEAAANNG---VAADAAEVGSILF----------DLEAKIVRSQILEGEPR 320
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPIS R G+LPR HGSALFTRGETQ+L + TLG + Q+ID L +
Sbjct: 321 IDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGE-YTD 379
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GR+G P RREIGHG LA+RAL LP+ ++F Y++R+ S ITES
Sbjct: 380 RFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAALPAADEFSYSVRLVSEITES 439
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ + ++F +L+DI G ED
Sbjct: 440 NGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGNKFA------VLTDILGDEDHL 493
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG GITA QMDIK+ GIT +M+ AL+QAK+GR HIL +M + P L
Sbjct: 494 GDMDFKVAGTASGITALQMDIKIQGITKEIMQVALEQAKEGRHHILDKMQEAVPAGRAEL 553
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP + +K+ PEKI +IG GG ++++ EETG + ID D+G V I + D S+ ++
Sbjct: 554 SDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQ-IDISDEGVVTIASVDASAGQE 612
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I LT VG IY +K + +G V++ PG++GL HIS++++ + D +
Sbjct: 613 AKRRIEELTASVEVGKIYEGTVLK-LLDFGAIVQVLPGKDGLLHISQIANERVNAVADYL 671
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
K G V VK++E +D+G+L+LS +A E E P
Sbjct: 672 KEGQQVRVKVLETDDRGRLKLSMKAAQAEEGGEAAP 707
>gi|424792148|ref|ZP_18218409.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. graminis ART-Xtg29]
gi|422797207|gb|EKU25578.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. graminis ART-Xtg29]
Length = 702
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/742 (41%), Positives = 447/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
LSEE+++ AV G ++++ N + L VE KP D + E + ++E
Sbjct: 190 SEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPS--DWVAPAKNEGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ V
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLAQLTPRAAV--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG + D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WVAADLSKEFGELEYQTMRGSVLSTNVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS + G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISVKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSMEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGEDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+AL QAK GR HIL EM P + LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASALTTPRSELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +KA
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKAR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS+ + K DV+K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEKVSDVLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVKVKVLEVDKQGRIRLSMKAV 693
>gi|291287262|ref|YP_003504078.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
acetiphilus DSM 12809]
gi|290884422|gb|ADD68122.1| polyribonucleotide nucleotidyltransferase [Denitrovibrio
acetiphilus DSM 12809]
Length = 711
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 309/738 (41%), Positives = 432/738 (58%), Gaps = 57/738 (7%)
Query: 100 QILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTS 159
+++ ETG +QA+G++ + G T++ + SE FFPL VNY E+F AAG+
Sbjct: 18 EMIFETGWKAKQANGSIWMKQGGTVVLVTAAGKKTASENQGFFPLTVNYIEKFYAAGKIP 77
Query: 160 GGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAA 219
GGFFKRE + D+E L RLIDRPLRP GF +ETQ+++ V+SYDG++ PD LA+ A
Sbjct: 78 GGFFKREAKPTDNETLTSRLIDRPLRPMFPDGFRNETQVIAHVVSYDGVNSPDMLAMNGA 137
Query: 220 GIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCD 279
A+ +S++P + IAGVRVG + K I+NP +E+ ++++LAG+DDAI+M+E
Sbjct: 138 SAALMISDIPFNGPIAGVRVGRLDGKLIINPPADRLEELDMNIILAGTDDAIVMVEAGMS 197
Query: 280 FLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEEL 339
+SE +I+A+Q G D ++++ + +V GK K T EL ++L
Sbjct: 198 VVSEAEVIEALQFGHDNIKKLVAKQNEMVAALGKEKFEYTSFCVADELVDEAMAELSDKL 257
Query: 340 VKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVV 399
+ L I K+ + +AL + E+ L + E L ++D D E+
Sbjct: 258 KEALVIPAKLEKYEALDKIGEEYLEAMKEK------------------LGEDDFDAELY- 298
Query: 400 DGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIR 459
K ++ EV K R ++ R DGR IR
Sbjct: 299 ----------------------------KNIYHEVEKKAFRDFTIDTKTRIDGRSYTDIR 330
Query: 460 PISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPP 519
I LLP AHGS LFTRGETQ+L V TLG K Q +D + D + KRF L Y+FPP
Sbjct: 331 DIDIETRLLPMAHGSGLFTRGETQALVVATLGTKTDTQILDTIYGDGK-KRFMLHYNFPP 389
Query: 520 SSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVC 579
VGEVG + P RREIGHG LAER+L VLP +DFPYTIR+ S + ESNGSSSMA+VC
Sbjct: 390 FCVGEVGFLRGPGRREIGHGALAERSLAQVLPDADDFPYTIRIVSEVLESNGSSSMATVC 449
Query: 580 GGCLALQDAGVPIKCSIAGVAMGMVLD-TDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
GGCLAL DAGVPIK +AGVAMG++ + D F +LSDI G+ED GDMDFKV G
Sbjct: 450 GGCLALMDAGVPIKSPVAGVAMGLIYEGADRFA------VLSDILGTEDHLGDMDFKVTG 503
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
+DGITA QMDIK+ G++ +++ AL QAK+ R +IL +M P P+ L+ AP
Sbjct: 504 TKDGITALQMDIKIEGLSQELLETALGQAKEARMYILGKMTDHMPVPNEELAPTAPRYVT 563
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
MK+ PEKI ++IG GGK +KSIIEE+G AID +D GT+ I A D +S+E + ++ +
Sbjct: 564 MKINPEKIGMVIGPGGKMIKSIIEESGA-AIDIDDTGTINIFAADKASIEIAVRRVNEIV 622
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
G +Y + +K + YG FVE+ PG+E L H+S+ S + D + VGD V VK
Sbjct: 623 AEVEDGAVY-DATVKKMMEYGAFVELIPGQEALLHVSQYSHERINSIADYLNVGDKVQVK 681
Query: 819 LIEVNDKGQLRLSRRALL 836
++ + G+ +LSR+ LL
Sbjct: 682 VVGKDPNGRFKLSRKVLL 699
>gi|418324141|ref|ZP_12935392.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pettenkoferi VCU012]
gi|365227638|gb|EHM68830.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
pettenkoferi VCU012]
Length = 700
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 309/746 (41%), Positives = 450/746 (60%), Gaps = 59/746 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + +R + +ETG + +QA+GAV V GET++ ++ + P + +DFFPL VN++E+
Sbjct: 9 KTEWANRSLTIETGQLAKQANGAVLVRYGETVVLSTAVASKEPRD-TDFFPLMVNFEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V ++++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPTVEQKEQSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++EE +++A+ G + E+K LV+ D I+ PE + V
Sbjct: 188 MVEAGASEITEEEMLEAIFFGHE-------EIKRLVQF-----QEDIIEHLQPEKQEFVP 235
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIV--ETIPDLLED 390
E L+ K+ L+E VLT + +DE + + E + + ++
Sbjct: 236 PEEDEALI------TKVTELTHSKGLKEAVLTFDKKQ----RDENIEALKAEVLAEFEDE 285
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
ED + E ++ +V +F ++ +RR I E R
Sbjct: 286 EDPENEALL-------------------------AEVSSIFGDLVKAEVRRLITEEKIRP 320
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRP+ S G+LPRAHGS LFTRG+TQ+L+V+TLG Q ID L ++E KR
Sbjct: 321 DGRQTDEIRPLESEAGILPRAHGSGLFTRGQTQALSVLTLGALSEFQLIDGL-GEEEEKR 379
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F Y+FP SVGE G + +P RREIGHG L ERAL ++P DFPYT+R+ S + ESN
Sbjct: 380 FMHHYNFPNFSVGETGPVRSPGRREIGHGALGERALRYIIPDTKDFPYTVRIVSEVLESN 439
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSS AS+CG LAL DAGVPIK +AG+AMG+V + +++ IL+DI G EDA G
Sbjct: 440 GSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTNDEDY------TILTDIQGMEDALG 493
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG GITA QMDIK+ G+T ++++AL+QA++GR IL ML+ P LS
Sbjct: 494 DMDFKVAGTSKGITAIQMDIKIDGLTKEIIQEALEQAREGRLAILDHMLETIDAPRPELS 553
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +++ ++
Sbjct: 554 AYAPKVETMTIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAIDQNAITRA 612
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+ II LT VG IY + ++K I YG FVE+ PG++ L HIS++++ + K EDV+
Sbjct: 613 REIIEELTREAEVGQIY-DAKVKRIEKYGAFVELFPGKDALVHISQIANERINKVEDVLS 671
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
+GD VK+ E++ +G++ S R LL
Sbjct: 672 IGDTFKVKVTEIDKQGRVNASHRVLL 697
>gi|421562983|ref|ZP_16008805.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2795]
gi|421906555|ref|ZP_16336448.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha704]
gi|393292303|emb|CCI72388.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha704]
gi|402341690|gb|EJU76863.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2795]
Length = 706
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 439/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|411001024|gb|AFV98755.1| polyribonucleotide nucleotidyltransferase [Candidatus Snodgrassella
sp. T3_2_35043]
Length = 707
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/756 (41%), Positives = 445/756 (58%), Gaps = 64/756 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+GAV ++ G+T++ +V A DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFY++ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ L+ VP + I RVG V ++++NPT ++ SQLDL++AG++ A+LM+E
Sbjct: 131 MLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLVVAGTEKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK--PKMLD-TIKLPPPELYKHVE 332
D LSEE ++ AV G + ++ ++A+ E + P+M D + L V
Sbjct: 191 SEADVLSEETMLGAVVFGHE---QMQAAIRAINEFADEVNPEMWDWQAPVADESLIAKVR 247
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+AG + + +IK K R L V E I E LL ++
Sbjct: 248 ELAGATIDEAFKIKQKQARTAKLDEAWSAV-------------EAALITEETDTLLANQ- 293
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
++ +FK++ + +R +I+EG R DG
Sbjct: 294 ----------------------------------IRGIFKDLEKEVVRGQILEGQPRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI+ R G+LPR HGSALFTRGETQSLA TLG ++ Q ID L S + RF
Sbjct: 320 RDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQRDEQIIDAL-SGEYTDRFM 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGS
Sbjct: 379 LHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVEDFSYTMRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVC GCL+L +AGVP+K +AG+AMG++LD ++F +L+DI G ED GDM
Sbjct: 439 SSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFA------VLTDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG G+TA QMDIK+ GIT +M+ AL QAK+ R +IL +M + P LS H
Sbjct: 493 DFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQEAVKGP-QELSAH 551
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + MK+ +KI +IG GG+ ++++ ETG E I+ +DGT+ I A + E +K
Sbjct: 552 APRLFTMKIHQDKIRDVIGKGGETIRALTAETGTE-INIAEDGTITIAASTSEAGEAAKR 610
Query: 753 IISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I +T VG +Y IK + G V + PG++GL HIS++S + + D +++
Sbjct: 611 RIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQISHDRVKNVSDYLQI 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
G V VK +E++D+G++RLS +ALL +A E P +
Sbjct: 671 GQQVKVKALEIDDRGRVRLSIKALLEKAPQEQKPAE 706
>gi|403745562|ref|ZP_10954357.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121280|gb|EJY55594.1| polyribonucleotide nucleotidyltransferase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 704
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/740 (41%), Positives = 439/740 (59%), Gaps = 60/740 (8%)
Query: 97 GDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAG 156
G R+ ++ETG + +QA+ AV V GET++ +V + P + DFFPL VNY+ER A G
Sbjct: 10 GGRRFILETGKLAKQATAAVNVQYGETVVLATVTASKEPKD-LDFFPLTVNYEERLYAVG 68
Query: 157 RTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAV 216
+ GGF KREGR + +L RLIDRP+RP GF ++ Q++ V+S D P+ A+
Sbjct: 69 KIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNDVQVVDIVMSVDQDCAPEIAAM 128
Query: 217 TAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEG 276
++ +S++P + I GV VGLV +F++NPT + E S L L+LAG+ DAI+M+E
Sbjct: 129 IGTSASLTISDIPFNGPIGGVIVGLVDGEFVINPTVAQAEKSDLHLVLAGTKDAIVMVEA 188
Query: 277 YCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAG 336
+ + E+ +++AV G + +I +E+ A E G K + PEL + V + A
Sbjct: 189 GANEVPEDTVLEAVLFGHKVIGQICDEILAFAEKVGVVKREVQLHQVDPELNQAVRQYAT 248
Query: 337 EELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEE 396
E + ++ +K+ R +ALS+L E+V +E P+
Sbjct: 249 ERVNIAVRNPDKLAREEALSNLNEEVQAHFAE--------------AFPE---------- 284
Query: 397 VVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFAD 456
E ++ + ++ + +RR I++ G R DGR D
Sbjct: 285 --------------------------REAEIAEIMHDILKEEVRRAILQEGIRPDGRKLD 318
Query: 457 GIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYS 516
IRPIS GLLPR HGSALFTRG+TQ+L+V TLG Q +D LE + R+ Y+
Sbjct: 319 EIRPISCEVGLLPRTHGSALFTRGQTQALSVCTLGAMGDEQMLDGLEVEKS-NRYMHHYN 377
Query: 517 FPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMA 576
FPP SVGE + APSRR+IGHG L ERAL+PV+PS +FPY IRV S I ESNGS+S A
Sbjct: 378 FPPFSVGEAKPLRAPSRRDIGHGALGERALDPVIPSPEEFPYAIRVVSEILESNGSTSQA 437
Query: 577 SVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKV 636
S+CG +AL DAGVPIK +AG+AMG+V + D+ IL+DI G ED GDMDFKV
Sbjct: 438 SICGSTMALMDAGVPIKAPVAGIAMGLVKEGDQVA------ILTDIQGIEDHLGDMDFKV 491
Query: 637 AGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLI 696
AG G+TA QMDIK+ GI ++++ALQQA DGR IL +M++ P + LSK AP +
Sbjct: 492 AGTAKGVTALQMDIKISGIDRHILERALQQAHDGRMFILGKMMQAIAQPRSDLSKFAPRV 551
Query: 697 HIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISN 756
+++ P+KI +IG GG+ + IIEETGV+ ID E DG V I + D +K++ +I N
Sbjct: 552 ITVRINPDKIRDVIGPGGRVINKIIEETGVK-IDIEQDGRVFIHSMDGGQADKARDMIQN 610
Query: 757 LTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVD 816
+ VG Y ++ + YG FVEI PG+EGL HIS+L N +AK EDV +VGD +
Sbjct: 611 IVREVEVGATYVG-KVTRVEKYGAFVEILPGKEGLVHISQLDINRVAKVEDVCQVGDPIT 669
Query: 817 VKLIEVNDKGQLRLSRRALL 836
VK+ E++++G++ LSR+ +L
Sbjct: 670 VKVTEIDNQGRINLSRKEVL 689
>gi|347540630|ref|YP_004848055.1| polynucleotide phosphorylase/polyadenylase [Pseudogulbenkiania sp.
NH8B]
gi|345643808|dbj|BAK77641.1| polynucleotide phosphorylase/polyadenylase [Pseudogulbenkiania sp.
NH8B]
Length = 715
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/751 (41%), Positives = 443/751 (58%), Gaps = 64/751 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
+S +G + +ETG + RQASGAV VT +T++ SV + DFFPL V+Y
Sbjct: 5 ISKTFQYGRHTVTLETGEVARQASGAVLVTMEDTVVLVSVVGSQNVKPGQDFFPLTVDYL 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER AAG+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S +
Sbjct: 65 ERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSLNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
D A+ A A+A+S +P + I RVG +I+NPT E+E SQLDL++AG+
Sbjct: 125 DSDIPAMIGASAALAISGLPFNGPIGAARVGYANGDYILNPTKTELETSQLDLVVAGTHR 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK--PKMLD-TIKLPPPE 326
A+LM+E L E +++ AV G D ++ +KA+ E+ + P M D + E
Sbjct: 185 AVLMVESEAKELPEAVMLGAVVFGHD---QMQAAIKAINELADEVNPVMWDWSASAQNNE 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V E++GE++ +I+ K R + L+ V L I E
Sbjct: 242 LIAKVREVSGEKIANAFRIRQKQARTQVLAEAWADVKAAL-------------ITEETDT 288
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
L +E +K +FK + ++ +R +I+ G
Sbjct: 289 LTANE-----------------------------------IKGIFKSLEAEIVRGQILAG 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI+ R G+LPR HGSALFTRGETQ++ V TLG ++ Q ID L + +
Sbjct: 314 EPRIDGRDTRTVRPIAIRTGVLPRTHGSALFTRGETQAMVVTTLGTQRDEQIIDAL-AGE 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF L Y+FPP S GE GR+G P RREIGHG LA+RAL VLPS ++F Y++RV S I
Sbjct: 373 YTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQVLPSADEFGYSMRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLAL +AGVP+K +AG+AMG++L+ + F +L+DI G E
Sbjct: 433 TESNGSSSMASVCGGCLALLNAGVPLKAHVAGIAMGLILEGNRFA------VLTDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK+GR HIL M + P
Sbjct: 487 DHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALDQAKEGRLHILGLMKEAVEGP- 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS HAP + +MK+ P+KI +IG GG+ ++SI ++TG E I+ E+DGT+ I +
Sbjct: 546 QQLSTHAPRLFVMKINPDKIREVIGKGGETIRSITKDTGTE-INIEEDGTITIASVTQEG 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +K I +T+ VG IY +K + G V I PG++GL HIS++++ +
Sbjct: 605 ADAAKKRIEEITVEVEVGKIYEGTVVKILDNNVGAIVSILPGKDGLVHISQIANERIKNV 664
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
D +K G +V VK IE++D+G++RLS +ALL
Sbjct: 665 SDYLKEGQVVKVKAIEMDDRGRIRLSIKALL 695
>gi|392547861|ref|ZP_10294998.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas rubra
ATCC 29570]
Length = 704
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/754 (41%), Positives = 444/754 (58%), Gaps = 56/754 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q + + G + +ETG + RQA GAV + G+T + +V + DFFPL VN
Sbjct: 2 QAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAAPGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+ AAGR GGF KREGR D+E L+ RLIDRP+RP GF +E Q+++ V+S +
Sbjct: 62 YQEKMYAAGRIPGGFLKREGRPSDNETLIARLIDRPIRPLFPDGFVNEVQVIATVVSSNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+A+S VP + I VRVG ++++NP+ E+E S+LDL++AG+
Sbjct: 122 EIQPDMVAMIGTSAALAISGVPFNGPIGAVRVGFTDGQYVLNPSVTELEQSKLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + L+EE ++ AV G + + I V GKP EL
Sbjct: 182 EGAVLMVESEAEILTEEEMLGAVVYGHEQSQAIIQAVNEFAAEAGKPAWDWAAPEKNVEL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ IA +++ +I +K+ R+ ALS + +V+ L+ +L
Sbjct: 242 SDKIAAIAEQKVGDAYRITDKVARKDALSEAKAEVVEKLT-----------------AEL 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE DE+ +V +F + K +R RI+ G
Sbjct: 285 AEDEALDEQ-----------------------------EVSKLFSSLEKKIVRGRIIAGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D +R + G+LPR HGSA+FTRGETQ+L TLG ++ +Q +DNL +
Sbjct: 316 KRIDGREPDMVRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQMMDNLIGTQK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G IG+P RREIGHG LA+R ++ V+P+ +FPY++RV S IT
Sbjct: 376 -HHFMLHYNFPPFCVGETGFIGSPKRREIGHGNLAKRGVQAVMPTLEEFPYSVRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGEDF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN G+TA QMDIK+ GIT +M+ AL+QAK R HIL+ M + PS
Sbjct: 489 HLGDMDFKVAGNSAGVTALQMDIKIEGITKEIMQIALRQAKAARLHILSVMDQAIASPSQ 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS+ AP I+ M + P+KI +IG GG ++ + EET I+ EDDGT+KI A + +S
Sbjct: 549 DLSEFAPRIYTMNIPPKKIADVIGKGGAVIRQLTEETDT-TIEIEDDGTIKIAATNGNSA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ A I LT VG IY ++ I +G FV + PG++GL HIS++S + D
Sbjct: 608 KEAIARIEALTAELEVGTIY-TGKVNRIVDFGAFVNVLPGKDGLVHISQISKERVNNVAD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
+ VG V VK++EV+ +G++RLS + L E+DA
Sbjct: 667 HLSVGQEVKVKVLEVDRQGRVRLSIKEAL-ESDA 699
>gi|312111628|ref|YP_003989944.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
gi|423720548|ref|ZP_17694730.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216729|gb|ADP75333.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. Y4.1MC1]
gi|383365901|gb|EID43192.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidans TNO-09.020]
Length = 712
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/745 (41%), Positives = 450/745 (60%), Gaps = 58/745 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R ++VE G + +QA+GAV V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDWAGRPLVVEIGELAKQANGAVLVRYGDTVVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP +GF +E QI+S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V KF++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + + GK KM + P+L + +
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ + +Q+ K+ R A+ ++ G ++K E+++
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEEVK---------AGVIAK-------------YEEQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE T +E+ KLV +EV RR I E R DGR
Sbjct: 287 DEE---------------------TLKQVNEILHKLVKEEV-----RRLITEEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L +E KRF
Sbjct: 321 KVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGL-GIEETKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++AL QA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTIREPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M++ P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ + + EK+K I
Sbjct: 554 PKILTMQINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVNEAMNEKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG IY ++K I +G FVE+ G++GL HISEL+ + + EDVV +GD
Sbjct: 613 IEDIVREVEVGQIYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPE 838
+ VK++E++ +G++ LSR+A+L E
Sbjct: 672 EILVKVMEIDKQGRVNLSRKAVLRE 696
>gi|422418930|ref|ZP_16495885.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
N1-067]
gi|313633394|gb|EFS00232.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
N1-067]
Length = 723
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 448/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTHDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + +++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------VLSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS GLLPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ DFPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEDFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++++AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVQVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ LL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKVLLEKKEQPEGD 704
>gi|323341663|ref|ZP_08081896.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464088|gb|EFY09281.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 712
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 303/746 (40%), Positives = 448/746 (60%), Gaps = 52/746 (6%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ F + + VETG + +QA G+V V +T++ S A ++ DFFPL V Y+E+
Sbjct: 7 ELDFCGKNLKVETGELAKQAGGSVLVRYEDTVVL-SAATASKKAKDIDFFPLTVTYEEKL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+ G+ GGF +REGR +H L RLIDR +RP +GF +E Q+++ VLS D PD
Sbjct: 66 YSVGKIPGGFLRREGRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A +++ +S++P IAGV VG + + F++NPT +E E S++ L++AG+ DAI
Sbjct: 126 MAAMFGASLSLMVSDIPFEGPIAGVTVGYIDETFVINPTLEEQEKSKMHLIVAGTKDAIN 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SEE++++A+ G + ++ + + + K KM T+ P E+ + VE
Sbjct: 186 MVEAGAEEVSEELMLEAMLFGHEWIKRLCAFQIEIAQEVAKEKMEVTLYEVPSEIVEEVE 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
+ G++L + + I K+ R + LEEK + Y ++ E
Sbjct: 246 ALVGKDLREAVAIHEKLKRYGMIDELEEKAVLHFEAKSYETESE---------------- 289
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+ T EV +V EV RR I R DG
Sbjct: 290 ----------------------KHKTVKYVKEVTHGMVADEV-----RRLISIEKIRPDG 322
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RP++ + LL R HGS LFTRGETQ L+V TLG Q ID+L SD + KRF
Sbjct: 323 RGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMADTQIIDDL-SDVDSKRFL 381
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR+GAP RREIGHG L ERAL V+PS+ +FPYTIR+ + + ESNGS
Sbjct: 382 HHYNFPPYSVGETGRMGAPGRREIGHGALGERALSYVIPSEEEFPYTIRLVAEVLESNGS 441
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SS AS+C G LAL AGVP+K +++G+AMG+V ++G D T IL+DI G ED GDM
Sbjct: 442 SSQASICAGSLALMAAGVPVKAAVSGIAMGLV----QYGDDYT--ILTDIQGMEDHFGDM 495
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA QMDIK+ G++ ++++AL QAK GR ++A M + P N + ++
Sbjct: 496 DFKVAGTKKGITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDEVISEPRNFVGEY 555
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M +KP+KI +IG+GGK + IIE+ ID EDDG V I D +S++K+KA
Sbjct: 556 APKIAQMNIKPDKIRDVIGAGGKIINQIIEDCNDVKIDIEDDGRVVIYHTDQASIDKAKA 615
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
+I N+ V VG+IY + ++ I +G FV + G + L H+S++ N + K ED+VK+G
Sbjct: 616 MIENIVRVAAVGEIY-DAKVVRIEKFGAFVNLFQGTDALLHVSKMDHNRVEKPEDIVKLG 674
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPE 838
D+V VK++E+++KG++ +SR+ALLP+
Sbjct: 675 DIVKVKVMEIDEKGRVNVSRKALLPK 700
>gi|386814351|ref|ZP_10101569.1| Polyribonucleotide nucleotidyltransferase [Thiothrix nivea DSM
5205]
gi|386418927|gb|EIJ32762.1| Polyribonucleotide nucleotidyltransferase [Thiothrix nivea DSM
5205]
Length = 697
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/744 (42%), Positives = 440/744 (59%), Gaps = 64/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + +QAS AV V +T + +V E DFFP+ V+YQE+F AA
Sbjct: 10 YGNNTVTIETGEIAKQASAAVIVNMDDTCVLVTVVGQKNAVEGRDFFPMTVDYQEKFYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKRE R + E LV RLIDRPLRP GF +E Q+++ V+S + D A
Sbjct: 70 GRIPGGFFKRETRATEEETLVARLIDRPLRPLFPDGFTNEVQVIAMVVSMNPEVPADIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ALS +P I RVG ++++NP+ ++ S LDL++AG+D A+LM+E
Sbjct: 130 MIGASAAMALSGMPFQGPIGAARVGYRNGEYLLNPSKADLATSGLDLVIAGTDAAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE-I 334
LSE++++ +V G D ++ + N + L + G PE ++ +
Sbjct: 190 SEAKELSEDVMLGSVIFGHDQMQVVINAINELTKEAGTVAW----DWSAPEANTALQAAV 245
Query: 335 AGE---ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
AGE L + QI +K R Y DE +V + L E
Sbjct: 246 AGECEAPLTEAFQIADKQQR-------------------YGRIDEV--LVAAVEKLTAKE 284
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E EG FS D+K FK V K +R I++G R D
Sbjct: 285 GE-----------EG---------------FSADDIKGEFKNVEKKIVRGSILDGKPRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D +RPI+ R G+LPRAHGSALFTRGETQ+L V TLG ++ AQ ID + + + F
Sbjct: 319 GRALDMVRPITVRLGVLPRAHGSALFTRGETQALVVTTLGTERDAQVIDAITGEYK-DNF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGEVGR GAP RREIGHG LA+R ++ ++P+ +DFPYTIR S ITESNG
Sbjct: 378 LFNYNFPPYSVGEVGRFGAPKRREIGHGRLAKRGVKAMVPNTDDFPYTIRCVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG LA+ DAGVP+K +AG+AMG++ + D F +LSDI G ED GD
Sbjct: 438 SSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGDRFA------VLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+ +GITA QMDIK+ GIT +M++AL QAK GR HIL EM K P + +S+
Sbjct: 492 MDFKVAGSSEGITALQMDIKINGITKEIMQQALTQAKAGRLHILGEMAKGIEAPRDEISQ 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP MK+ PEKI +IG GG+ ++ I E+TG +ID D+G +KI A D + +++
Sbjct: 552 YAPRYVTMKINPEKIREVIGKGGETIRGITEKTGC-SIDINDEGFIKIAAVDAKAAYEAR 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
AII ++T + +Y ++ I +G FV I PG++GL HIS++S+ + D + V
Sbjct: 611 AIIESITAEVELNKVYEG-KVARIMDFGAFVTILPGKDGLLHISQISNERVENVTDHLNV 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VK+IE++ +G+LRLS +A+
Sbjct: 670 GDTVRVKVIEIDRQGRLRLSAKAI 693
>gi|451811633|ref|YP_007448088.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776791|gb|AGF47790.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 700
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 311/740 (42%), Positives = 437/740 (59%), Gaps = 54/740 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G +++ETG + RQ+SGAV + G+T+I +V + E FFPL V+Y E+ A
Sbjct: 11 YGLNDVVLETGEIARQSSGAVLASMGDTVILATVVGSQEIKEGQKFFPLTVDYIEKTYAV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG++ + E+L RLIDRPLRP K FY+E QI+ VLS D PD ++
Sbjct: 71 GKIPGGFFKREGKSSEKEILTARLIDRPLRPLFPKQFYNEVQIIIHVLSVDPEIDPDIIS 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + A+ALS +P + I +RVG + + F++NPT ++E S LDL+LAGS DA+LM+E
Sbjct: 131 IIGSSAALALSGIPFNGPIGAIRVGFIENDFVINPTKSQLEKSSLDLVLAGSSDAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSE +++A+ G ++ + + + LV+ GKP+ K L + E +
Sbjct: 191 STARELSESTMLEAIDFGHQQMQVVIDNIIELVKEAGKPEWDWKPKPCDQFLVDIINEFS 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E+LV IK K R L + ++ + + VG + IP
Sbjct: 251 NEKLVSAYNIKEKQDRSLVLREIRLEIKNFVKDR--------VGNSDVIP---------- 292
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+D +D+ ++F + SK +R RI+ G R DGR
Sbjct: 293 ---LDSTIDD-----------------------IIFN-LESKIVRNRILSGEPRIDGRNT 325
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPRAHGSALFTRGETQ+L ++TLG KQ Q ID+L + +F Y
Sbjct: 326 RTVRPIDIRLGVLPRAHGSALFTRGETQALVIVTLGTKQDEQIIDSLLGEYR-DKFIFHY 384
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE+GRIG P RRE+GHG LA RAL P+LP DF YT R+ S ITESNGSSSM
Sbjct: 385 NMPPFATGEIGRIGIPKRREVGHGYLARRALTPMLPDPKDFHYTTRLVSEITESNGSSSM 444
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGG LA+ DAGVPI +AGVAMG++L+ D+F IL+DI G ED GDMDFK
Sbjct: 445 ASVCGGSLAMMDAGVPISKHVAGVAMGLILEDDKFA------ILTDILGDEDHLGDMDFK 498
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG DGITA QMDIK+ GIT +M AL QA++GR IL +M K LS ++P
Sbjct: 499 VAGTSDGITALQMDIKIQGITKDIMGIALLQAQEGRLSILEKMKKAINISREELSSYSPK 558
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I +K+ P+KI +IG GG +++I EET + ID +DG V + D ++++ + I
Sbjct: 559 IITIKINPDKIRDVIGKGGATIRAITEETATQ-IDISEDGVVSVAGVDNNNVQNAYKKIL 617
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
LT VG +Y +I I +G V++ PG++GL HISE+S+N + DV+ +G +
Sbjct: 618 ELTADVEVGSVYEG-KILRILDFGAIVQLFPGKDGLLHISEISNNRIQNISDVLSIGQRI 676
Query: 816 DVKLIEVNDKGQLRLSRRAL 835
VK+IE +DKG+ RLS +A+
Sbjct: 677 KVKVIESDDKGRFRLSAKAV 696
>gi|302338543|ref|YP_003803749.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
gi|301635728|gb|ADK81155.1| polyribonucleotide nucleotidyltransferase [Spirochaeta smaragdinae
DSM 11293]
Length = 697
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 309/743 (41%), Positives = 437/743 (58%), Gaps = 58/743 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P V + G R +++ETG M +QA+GAV + + +VC P E DF PL V Y
Sbjct: 2 PHQVTVSIGGRDLILETGRMAKQANGAVFAKYEGSAVLATVCCGSSPMESLDFVPLQVEY 61
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
E++ AAG+ GGF KREGR KD E+LV RLIDRP+RP K F E QI+ +S D +
Sbjct: 62 NEKYYAAGKIPGGFLKREGRPKDKEILVSRLIDRPMRPLFSKEFKRELQIIPTTVSADQI 121
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ PD +A+ AA AV +S++P + + VR+ V D+ I+NP+ ++ L+++++G+
Sbjct: 122 NPPDIVAMNAASAAVCVSDIPFAGPVGAVRIANVDDELIINPSFDQISRCTLEIVVSGTK 181
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
D I M+EG + EE+L+ A+ + + A++++ + L+ + GK K+ ++ E
Sbjct: 182 DGITMVEGGAKEVPEELLLSAIALAEPAIKKLCEAQEQLMALAGKEKLPLVVEEKKLERR 241
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ + + A ++ + +K K+ R A+ +++ ET
Sbjct: 242 QEMWDFAYPKMEEACFVKGKMNRGAAVKAVK---------------------TETAEAFA 280
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+D +ED E + + + +E+ +K +R I++ G
Sbjct: 281 DDLNEDNERLFNA----------------------------LMEEMETKVVRSSILDKGV 312
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R+DGR + +RPI+ G+L RAHGSALFTRGETQSLAV TLG Q +DN++ D
Sbjct: 313 RTDGRDLETVRPITCEVGILDRAHGSALFTRGETQSLAVTTLGTVYDEQMMDNIDGDKTY 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SVGE GR+ RREIGHG LA RALE VLP DFPYTIRV S I E
Sbjct: 373 ENFMLHYNFPPFSVGETGRL-TTGRREIGHGHLAHRALEAVLPQKKDFPYTIRVVSEILE 431
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGG L+L AGVPI+ +AG+AMG+V + D +L+DI G ED
Sbjct: 432 SNGSSSMATVCGGTLSLLHAGVPIRKPVAGIAMGLVSEGDRAA------VLTDILGEEDH 485
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG EDGITAFQMDIK+ GI+ +MK+AL+QAK GR HIL M P +
Sbjct: 486 LGDMDFKVAGTEDGITAFQMDIKIAGISSDLMKRALEQAKKGRMHILGIMNATLKEPVSD 545
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S AP I +KV +KI IIG GGK +K+I E++G E ++ +D+GTV I K E
Sbjct: 546 VSDFAPKILSLKVDVDKIGAIIGPGGKTIKAIAEQSGSE-VNIDDNGTVTIFGKTKEKAE 604
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
K++ I + P VG IY +K I +G FVEI PG+EGLCHIS+LS + DV
Sbjct: 605 KAREFIKAIVEEPEVGKIYEGT-VKRIMDFGAFVEILPGKEGLCHISKLSRKRVNSVSDV 663
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS 831
+ V + VKLIE++ +G+L LS
Sbjct: 664 LAVDQKIPVKLIEIDRQGRLNLS 686
>gi|51892669|ref|YP_075360.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM
14863]
gi|81388937|sp|Q67P77.1|PNP_SYMTH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|51856358|dbj|BAD40516.1| polynucleotide phosphorylase [Symbiobacterium thermophilum IAM
14863]
Length = 762
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/759 (40%), Positives = 441/759 (58%), Gaps = 61/759 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S + G R + +ETG + +QASG+V V G++++ + + P E DFFPL V+Y+E
Sbjct: 20 SFSMELGGRTMTLETGRLAKQASGSVLVNYGDSVVLCTAVGSATPREGVDFFPLTVDYEE 79
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + GR G +F+REGR +L RL DRP+RP +GF ++ Q++ VLS D H
Sbjct: 80 RMYSVGRIPGNWFRREGRPTSKAILWARLTDRPIRPLFPEGFRNDVQVVCTVLSVDPDHP 139
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
+ + + A A+ +S++P I GV VGLV +F++NPT ++ E S++ L++AG++ A
Sbjct: 140 VEIMGMIGASAALTISDIPFEGPIGGVIVGLVDGQFVINPTAEQQERSEMHLVVAGTEHA 199
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVRE-ISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
+LM+E + E+ ++ A+ G + ++ I +K + GKPK + PPPEL +
Sbjct: 200 VLMVEAGAKEVPEQTMLDAILFGHEVIKNTIIPTIKQMQAEVGKPKREVVLFNPPPELEQ 259
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E A L + ++ +K+ R +A++++ E V L+E P+
Sbjct: 260 AVREAATVRLREAVRNPDKLAREEAVAAVGEAVQAELAEQ--------------FPE--- 302
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
SE + + K+V + +RR I+E G R
Sbjct: 303 ---------------------------------SEKHIAYLLKKVLKEEVRRAIIEEGIR 329
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR IRPI LLPR HGS LF RG+TQ L++ TLG Q++D+L + +E K
Sbjct: 330 PDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKLDDL-TLEETK 388
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + P RREIGHG LAERALEPV+P + +FPYTIRV S + ES
Sbjct: 389 RFMHHYNFPPYSVGETRPLRGPGRREIGHGALAERALEPVIPPEEEFPYTIRVVSEVLES 448
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL AGVPIK +AGVAMG+V D + G +L+DI G EDA
Sbjct: 449 NGSSSMASVCGSTLALMAAGVPIKAPVAGVAMGLVEDPE----TGRYAVLTDIQGIEDAL 504
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG + G+TA QMD+K+ G + +++KAL QA++GR I+ +ML C P L
Sbjct: 505 GDMDFKVAGTKKGVTALQMDMKISGTSREILEKALMQAREGRMFIMEKMLACISEPRKEL 564
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVE----AIDTEDDGTVKITAKDLS 745
S AP I MK+ PEKI +IG GG + IIEET V ID +DDGT+ I A +L
Sbjct: 565 SPWAPRIITMKISPEKIRDVIGKGGSTINKIIEETKVGHTKVEIDIQDDGTIYIAAVNLE 624
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ E+++ +I L P G IY + + +G FVEI PG+EGL HISELS +A+
Sbjct: 625 AGERARQMIEALVKDPEPGMIY-TGRVTRLMQFGAFVEILPGKEGLVHISELSDKRVARV 683
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
EDVV +GD V VK+ E++ G++ LS + +P+ A P
Sbjct: 684 EDVVNIGDEVTVKVTEIDRLGRINLSIKDAMPKQAASQP 722
>gi|345017696|ref|YP_004820049.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033039|gb|AEM78765.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 700
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/753 (41%), Positives = 443/753 (58%), Gaps = 59/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R++LV+TG + +QA+GA V G+T++ +VC + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLLVQTGKVAQQANGAAWVKYGDTVVLVTVCASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D
Sbjct: 65 RLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V VGLV +FI+NP ++ E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE ++ A+ + +++I ++ +V+ G PK + EL +
Sbjct: 185 IVMVEAGAKEVPEETMLDAIMYAHEYIKQIIGFIEEIVKEVGVPKSEVILHEIDKELEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A E++ L+ K R L +E++VL E PD L D
Sbjct: 245 VRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEE--------------YPDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V + + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYNIMKEQMRKMITEEKIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q +D + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGI-GDEEAKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALGERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + D +L+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVS------VLTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++K AL++A+ GR +IL++ML+ P LS
Sbjct: 488 DMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKEPRKQLS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M V PEKI IIG GGK + II ETGV+ ID E+DG + ITA DL S E++
Sbjct: 548 VYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVK-IDIEEDGRLYITASDLRSGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T VG+IY ++ I P+G FVEIAPG+EGL HIS+LS + K EDVVK
Sbjct: 607 KQMIEAITKDIAVGEIYLG-KVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VGD + VK+ +++ G++ LSR+ LP+ + E
Sbjct: 666 VGDNILVKVTDIDKLGRISLSRKDALPDEEEEE 698
>gi|222084321|ref|YP_002542850.1| polynucleotide phosphorylase/polyadenylase [Agrobacterium
radiobacter K84]
gi|398377126|ref|ZP_10535304.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. AP16]
gi|254782699|sp|B9JGS9.1|PNP_AGRRK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221721769|gb|ACM24925.1| polyribonucleotide nucleotidyltransferase protein [Agrobacterium
radiobacter K84]
gi|397727145|gb|EJK87573.1| polyribonucleotide nucleotidyltransferase [Rhizobium sp. AP16]
Length = 710
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/750 (41%), Positives = 441/750 (58%), Gaps = 67/750 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 TVEIEWAGRPLKLETGKIARQADGAVMATYGETVVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ A A+ LS VP I G RVG + ++++NP EM++S LDL++AG+ +A
Sbjct: 126 PDILSMVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESSLDLVVAGTQEA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK 329
+LM+E LSE++++ AV G + + + + L E+ K P+ PE +
Sbjct: 186 VLMVESEAKELSEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPRDFQ------PEDHS 239
Query: 330 HVE----EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
+E IA EL + K R A+ +++ KV
Sbjct: 240 ALEAEMLSIAEGELRTAYKNTQKAERYAAVDAVKAKV----------------------- 276
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
H P+ + P +EV + VFK + +K +R I++
Sbjct: 277 ---------------------KAHFFPEGVE--PKYSAEV-IGAVFKHLQAKIVRWNILD 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR +R I S G+LPR HGS+LFTRGETQ++ V TLG + Q +D+L
Sbjct: 313 TKSRIDGRDLSTVRAIVSEVGVLPRTHGSSLFTRGETQAIVVATLGTGEDEQYVDSLTGM 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S
Sbjct: 373 YK-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPTAEQFPYTLRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G
Sbjct: 432 ITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDERFA------VLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG + GITA QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 486 EDHLGDMDFKVAGTDGGITALQMDIKIEGITEEIMNVALNQAKGGRLHILGEMAKAISES 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 546 RGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSSGK 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+E ++ I ++ P VG IY +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 605 EIEAARKWIHSIVAEPEVGQIYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKT 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+DVVK GD V VKL+ +++G++RLS + +
Sbjct: 664 QDVVKEGDKVWVKLLGFDERGKVRLSMKVV 693
>gi|336236003|ref|YP_004588619.1| polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidasius C56-YS93]
gi|335362858|gb|AEH48538.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 712
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/745 (41%), Positives = 450/745 (60%), Gaps = 58/745 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R ++VE G + +QA+GAV V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDWAGRPLVVEIGELAKQANGAVLVRYGDTVVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP +GF +E QI+S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFSEGFRNEVQIVSMVMSVDQDCSPEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V KF++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AALLGSSLALTISDIPFEGPIAGVTVGRVDGKFVINPTVEQSEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + + GK KM + P+L + +
Sbjct: 189 VEAGADEVPEEIMLEAIMFGHEDIKRLIAFQEEIAAQVGKEKMEVVLYELDPQLEAKIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ + +Q+ K+ R A+ ++ G ++K E+++
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEEVK---------AGVIAK-------------YEEQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE T +E+ KLV +EV RR I E R DGR
Sbjct: 287 DEE---------------------TLKQVNEILHKLVKEEV-----RRLITEEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L +E KRF
Sbjct: 321 KVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGL-GIEETKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEKEFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++AL QA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTREILEEALLQARKGRMEILDHMMQTIREPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M++ P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ + + EK+K I
Sbjct: 554 PKILTMQINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVNEAMNEKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG IY ++K I +G FVE+ G++GL HISEL+ + + EDVV +GD
Sbjct: 613 IEDIVREVEVGQIYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEERVGRVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPE 838
+ VK++E++ +G++ LSR+A+L E
Sbjct: 672 EILVKVMEIDKQGRVNLSRKAVLRE 696
>gi|297544656|ref|YP_003676958.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842431|gb|ADH60947.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 700
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 309/753 (41%), Positives = 445/753 (59%), Gaps = 59/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R+++V+TG + +QA+GA V G+T++ + C + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ QI++ +LS D
Sbjct: 65 RLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V VGLV +F++NP + E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE +++A+ + +++I ++ +V+ G PK + EL +
Sbjct: 185 IVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVKEVGVPKSEVILHEIDKELEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A +++ + L+ K R L +E++VL E PD L D
Sbjct: 245 VRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEE--------------YPDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V + + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYNIMKEQMRKMITEEKIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q +D + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGI-GDEEAKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG LAERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + D +L+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVS------VLTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++K AL++A+ GR +IL++ML+ P LS
Sbjct: 488 DMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVIKEPRKELS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M V PEKI IIG GK + II ETGV+ ID E+DG + ITA DL S E++
Sbjct: 548 IYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVK-IDIEEDGRLYITASDLKSGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T TVG+IY ++ I P+G FVEIAPG+EGL HIS+LS + K EDVVK
Sbjct: 607 KQMIEAITKDITVGEIYLG-KVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VGD + VK+ +++ +G++ LSR+ LP+ + E
Sbjct: 666 VGDDILVKVTDIDKQGRISLSRKDALPDEEEEK 698
>gi|150388833|ref|YP_001318882.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
metalliredigens QYMF]
gi|187470925|sp|A6TM05.1|PNP2_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 2; AltName:
Full=Polynucleotide phosphorylase 2; Short=PNPase 2
gi|149948695|gb|ABR47223.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
metalliredigens QYMF]
Length = 702
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/754 (40%), Positives = 442/754 (58%), Gaps = 59/754 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ G R +VE G + A G+ + G+T + + C + P E DFFPL+ +Y+E
Sbjct: 4 TFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ A G+ GGF KRE R + L RLIDRP+RP KG++++ Q+++ VLS D
Sbjct: 64 KLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCP 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD A+ + IA+++S +P A V VG++ K+IVNPT+++ E S+L+L+++G+ DA
Sbjct: 124 PDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGKYIVNPTSEQKELSELELIVSGTKDA 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++MIE + L+E ++ A+ + +++I ++ +V GKPK +K EL
Sbjct: 184 VMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETDSELLAE 243
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V +L ++ +K R + + ++ + L D E+
Sbjct: 244 VVSFLDTKLANAIKTVDKTERNENIKAISAEAL----------------------DYFEE 281
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ E +S++ +L ++ V+ R+ I G R
Sbjct: 282 KYEG------------------RSKEVNTILSKQIKVET----------RKMITSEGIRP 313
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
D R D IRPISS G+LPR HG+ LFTRGETQ L V TLGD + AQRID L +DE KR
Sbjct: 314 DNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE-KR 372
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGE + PSRREIGHG L ERAL+P++P DFPY IR+ S + N
Sbjct: 373 YMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDFPYAIRLVSEVLACN 432
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSS ASVCG L+L DAGVPIK +AG+AMG++ + +G ILSDI G EDA G
Sbjct: 433 GSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKE------EGQIAILSDIQGMEDALG 486
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMD KVAG E+GITA QMDIK+ GI +M+ AL QAK GR HIL +M + P LS
Sbjct: 487 DMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAITSPRTELS 546
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + +KV P+K+ +IG+GGK + II+ETGV+ I+ E+DGT+ I A D S +
Sbjct: 547 AYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVK-INIENDGTIYIAAPDQESARVA 605
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+I + P VG++Y IK I +G FVEI PG+EGL HIS L+ +AK DV+
Sbjct: 606 LEMIELIVKDPVVGEVYTGKVIK-IMDFGAFVEILPGKEGLVHISNLAHERVAKVADVLA 664
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
GDL++VKL+E+N +G++ LSR+ALLP+ + E P
Sbjct: 665 EGDLIEVKLMEINPQGKIGLSRKALLPKPEKEAP 698
>gi|380513486|ref|ZP_09856893.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas sacchari
NCPPB 4393]
Length = 702
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/744 (40%), Positives = 444/744 (59%), Gaps = 64/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P I +VG ++I+NPT +++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE---LYKHV 331
LSEE+++ AV G ++++ N + L VE KP + P + + +
Sbjct: 190 SEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSEW----VAPSKNEAMIAAL 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+E GE+L Q+++K+ RR A++++++ VL L+
Sbjct: 246 KEAVGEQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAP----------------------- 282
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++T + D+ F E+ + +R ++ R D
Sbjct: 283 ------------------------RATAENWVAADLAKEFGELEYQTMRGSVLSTKVRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + S + + F
Sbjct: 319 GRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAV-SGEYKENF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE GR GAP RREIGHG LA+R + V+P+ +FPYTIRV S ITESNG
Sbjct: 378 LFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTMEEFPYTIRVVSEITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG LAL DAGVP+K +AG+AMG+V + ++F ++LSDI G ED GD
Sbjct: 438 SSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG DG++A QMDIK+ GIT +MK+AL QAK GR HIL EM K P LS
Sbjct: 492 MDFKVAGTADGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMSKALTTPRAELSD 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K
Sbjct: 552 YAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIVIASVNAIAAQAAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+ I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K
Sbjct: 611 SRIEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD+V VK++EV+ +G++RLS +A+
Sbjct: 670 GDVVKVKVLEVDKQGRIRLSMKAV 693
>gi|288959704|ref|YP_003450045.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
gi|288912012|dbj|BAI73501.1| polyribonucleotide nucleotidyltransferase [Azospirillum sp. B510]
Length = 711
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/746 (41%), Positives = 430/746 (57%), Gaps = 70/746 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R++++ETG + RQA+GAV VT G+T + + A P DFFPL VNYQE+
Sbjct: 16 EIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLTVNYQEKA 75
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + E LV RLIDRP+RP GF +ETQ++ VLS+D + PD
Sbjct: 76 FAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSHDLENDPD 135
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+++ A A+ +S +P I RVG ++I+NPT ++ED+ LDL++AG+ + +L
Sbjct: 136 IVSMVGASAALTISGIPFLGPIGAARVGYKNGQYILNPTMDQVEDTDLDLVVAGTTEGVL 195
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E L+EE+++ AV G + + N + L E K + LP P
Sbjct: 196 MVESEAKELTEEVMLGAVMFGHSNFQPVINMIIDLAEEAAK----EPWDLPEPAY----- 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYV-----SKDETVGIVETIPDL 387
RKAL + + + E Y S+ E VG
Sbjct: 247 ------------------DRKALKARLRETVGAAVEAAYTETVKQSRYEKVGAA------ 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
K K+ ++ F + FKE+ + LR +++ G
Sbjct: 283 -----------------------KAKALETLAEEFDAQSIGFEFKELEADILRGAVLKTG 319
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RR DGR +RPI S G+LPRAHGSALFTRGETQ+L V TLG Q Q ID LE +
Sbjct: 320 RRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQDEQIIDALEGEYR 379
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP DFPYT+RV S +T
Sbjct: 380 -EHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKEDFPYTLRVVSEVT 438
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG L+L DAG P+ +AG+AMG++ + F +LSDI G ED
Sbjct: 439 ESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFA------VLSDILGDED 492
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E G+TA QMDIK+ IT +MK AL QAKDGR HIL EM K
Sbjct: 493 HLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMAKALTGARE 552
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
++++AP I ++ + EKI +IGSGGK ++ I+E+TG + ID +DDGTVK++A D
Sbjct: 553 GVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAK-IDIDDDGTVKVSAVDQKKS 611
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I + P +G +Y +K + +G FV R+GL HISEL+ + K D
Sbjct: 612 DAAIEWIKGIVAEPEMGVVYTGKVVK-VVDFGAFVNFLGSRDGLVHISELAQQRVGKVSD 670
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
VV GD V VK+I +D+G+++LS +
Sbjct: 671 VVSQGDSVKVKVIGFDDRGKVKLSMK 696
>gi|347548717|ref|YP_004855045.1| putative polynucleotide phosphorylase [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346981788|emb|CBW85761.1| Putative polynucleotide phosphorylase (PNPase) [Listeria ivanovii
subsp. ivanovii PAM 55]
Length = 723
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 447/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTHDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + +++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------VLSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS GLLPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ DFPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEDFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVQVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ LL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKVLLEKKEQPEGD 704
>gi|269837582|ref|YP_003319810.1| polyribonucleotide nucleotidyltransferase [Sphaerobacter
thermophilus DSM 20745]
gi|269786845|gb|ACZ38988.1| Polyribonucleotide nucleotidyltransferase [Sphaerobacter
thermophilus DSM 20745]
Length = 790
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 319/752 (42%), Positives = 443/752 (58%), Gaps = 53/752 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R++ +ETG M A GAVTV G+T++ T+V P E DFFPL V+Y+E+
Sbjct: 16 IEVAGRRLTIETGRMAGLAHGAVTVRYGDTLVLTTVVGEREPREGLDFFPLTVDYEEKMY 75
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGF KREGR + +L RL DRP+RP KG+ E Q+++ VLS D + PD
Sbjct: 76 AAGKIPGGFIKREGRPTEAAILAARLTDRPIRPLFPKGYKAEVQVITTVLSADQENAPDV 135
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L++ A A+ LS +P + + VR+G + + +VNPT ++ DS+LD+++AG+ DA++M
Sbjct: 136 LSIIGASAALMLSPIPWAGPVGAVRIGDIDGELVVNPTEHQLIDSKLDMVVAGTADAVMM 195
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+EG D +SE+ ++AV + D ++ I L E+ GK K T EL + +EE
Sbjct: 196 VEGEADEISEDRFLEAVLLAHDEIKRIVAMQHELRELAGKEKWEFTPPEENTELKQQIEE 255
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G+ LV + +K R A L++ V+ +E +
Sbjct: 256 YIGDRLVSAVFNPDKEQRLAATDELKQDVIAHFTEA---------------------PEG 294
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+E V EV E +F + +RR I+E R DGR
Sbjct: 295 EEPVATVREVSE------------------------IFDGLVKGLVRRTILERSERPDGR 330
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IR I G+LPRAHGSA+FTRG+TQ+L V+TLG Q +D L +E KR+
Sbjct: 331 RPDEIREIWIETGVLPRAHGSAIFTRGQTQALTVVTLGTTSEEQLLDGL-GIEESKRYLH 389
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGEV R+ PSRR+IGHG LAER+L VLP ++ FPYT+RV S I SNGS+
Sbjct: 390 HYNFPPFSVGEVRRLRGPSRRDIGHGALAERSLLAVLPDEDVFPYTMRVVSEIVSSNGST 449
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPI+ +AGVAMG++ D + G IL+DI G EDA GDMD
Sbjct: 450 SMASVCGSSLALMDAGVPIRAPVAGVAMGLITDPE----TGRYQILTDIQGIEDALGDMD 505
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +GIT QMDIKV GIT +M++AL+QA+ GR +IL +M P +S +A
Sbjct: 506 FKVAGTAEGITGIQMDIKVMGITPEIMREALEQARRGRLYILDKMNAVLAQPRPEMSPYA 565
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I+ ++++P++I +IG GGK ++ I E TG + ID EDDGTV I+A + S K+
Sbjct: 566 PRIYRIQIRPDQIGEVIGPGGKVIRGIQEATGAK-IDIEDDGTVFISAVNEESARKAVDT 624
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T VP VGDI+ +K+I P G FVEI PG++G HISEL + EDVV+VG
Sbjct: 625 IERMTKVPEVGDIFFG-RVKTIIPSGCFVEILPGKDGFLHISELEPYRVNSVEDVVQVGQ 683
Query: 814 LVDVKLIEVNDKGQLRLSRRALLP-EADAENP 844
++V + + G++ LSR+ALL +AD P
Sbjct: 684 ELNVVVTGIRPDGKINLSRKALLTSDADQREP 715
>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
Length = 715
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 317/747 (42%), Positives = 440/747 (58%), Gaps = 55/747 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
VS +G +++ETG + RQASGAV V+ +T++ +V A DFFPL V+Y
Sbjct: 5 VSKSFQYGQHTVVLETGEIARQASGAVLVSIDDTVVLATVVGAKNAKPGQDFFPLTVDYV 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREGR + E+L RLIDRPLRP +GFY+E Q++ +S +
Sbjct: 65 EKTYAAGRIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPEGFYNEVQVILHTVSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P + I RVG + ++++NPT+ +++ SQ++L++AG++
Sbjct: 125 DPDIAAMIGASAALAISGIPFNGPIGAARVGYIDGQYVLNPTSSQIQASQMNLVVAGTEA 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSEE+++ V G D ++ N + LV GKP+ D P E
Sbjct: 185 AVLMVESEAQNLSEEVMLGGVMFGHDQMQAAINAIHDLVAEAGKPEW-DWQPAPANEALA 243
Query: 330 HVEEIAGEE-LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
A +E L ++ K R L + +V L+E+ E PD +
Sbjct: 244 IAVASAAQEGLQAAYLVREKQARTTKLREVYAEVKAKLAEHATAK-------CEDAPDNV 296
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E E+ MLF ++ +K +R +I+ G
Sbjct: 297 EVEN---------------------------MLF----------DLEAKIVRGQILNGEP 319
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPIS G+LPRAHGSALFTRGETQ+L V TLG KQ Q ID++ +
Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDSIMGEHR- 378
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+FPP + GE GR G+P RREIGHG LA+RAL LP DF YTIR+ S ITE
Sbjct: 379 DRFMLHYNFPPFATGETGRFGSPKRREIGHGRLAKRALVSSLPEAQDFQYTIRIVSEITE 438
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCGG LA+ DAGVP+K +AGVAMG++ D +F +L+DI G ED
Sbjct: 439 SNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKFA------VLTDILGDEDH 492
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG GITA QMDIK+ GIT +M+ AL QAK+GR HIL +M +
Sbjct: 493 LGDMDFKVAGTVTGITALQMDIKIQGITREIMQVALAQAKEGRLHILGKMKEALDGSRTE 552
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS+ AP + +K+ PEKI +IG GG ++++ EETG + ID DDGT+ I++ DL
Sbjct: 553 LSEFAPRMLTVKINPEKIRDVIGKGGATIRALTEETGTQ-IDIGDDGTITISSADLDKAR 611
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+++ I LT VG Y ++ + +G V++ PGR+GL HISE+++ +A DV
Sbjct: 612 EAERRIKELTADVEVGQEYEGPVLR-LLDFGAIVQVLPGRDGLLHISEIANYRIANINDV 670
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+KVG V +K+IE +DKG+LRLS +A+
Sbjct: 671 LKVGQTVRIKVIEADDKGRLRLSMKAI 697
>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
DSM 5159]
gi|257096714|sp|B9KYR9.1|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
DSM 5159]
Length = 790
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 318/747 (42%), Positives = 450/747 (60%), Gaps = 55/747 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R + +ETG + QA GAV V GET++ T+V A P E DFFPL V Y+E+
Sbjct: 10 IEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEYEEKMY 69
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFF+REG+ + +L RL DRP+RP KG+ +E Q++S VLS D + PD
Sbjct: 70 AAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQENEPDV 129
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L++ A A+ LS++P + VR+G + + ++NPT+ ++ +S++D+++AG+ DAILM
Sbjct: 130 LSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTADAILM 189
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELYK 329
+EG + +SE+ I+AV ++ I L + GKPK + PP EL +
Sbjct: 190 VEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKR----EFVPPQENVELKQ 245
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ + G+ L + + +K R +A ++L E+V+ N
Sbjct: 246 QIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPN-------------------- 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
E + G G L + +V +F + + +RR I+E G R
Sbjct: 286 ------EPLAIGTPQSG--------------LPTAKEVGDLFDSLVKELVRRTILEQGER 325
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IR I + GLLPR HGSALFTRG+TQ L V TLG K+ Q +D+L +E K
Sbjct: 326 PDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSL-GIEETK 384
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
R+ Y+FPP S GE+ R+ PSRR+IGHG LAERAL VLPS+++FPYT+R+ S + S
Sbjct: 385 RYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAVLPSEDEFPYTMRLVSEVLSS 444
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+SMASVCG LAL DAGVPI+ +AGVAMG+V TD+ G T IL+DI G EDA
Sbjct: 445 NGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLV--TDQTTGRYT--ILTDIQGIEDAL 500
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG DGITA QMDIKV GIT +M+ AL+QA+ GR IL +M + P +
Sbjct: 501 GDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARRGRLFILDKMSEVIDAPRPEM 560
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I +K+KPE+I +IG GG+ +++I E+TG + I E+DGTV I+A + + +
Sbjct: 561 SPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTK-ISIEEDGTVFISAANEDAARR 619
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I LT VP VG+I+ + +I P G FVEI PG++G HISE++ + EDV+
Sbjct: 620 AVREIERLTRVPEVGEIFYG-RVVTIIPSGAFVEILPGKDGFLHISEIAPERVRSVEDVL 678
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
KVG ++V +I V G++ LSR+ALL
Sbjct: 679 KVGQEINVMVIGVRPDGKINLSRKALL 705
>gi|119385483|ref|YP_916539.1| polynucleotide phosphorylase [Paracoccus denitrificans PD1222]
gi|119375250|gb|ABL70843.1| 3' exoribonuclease [Paracoccus denitrificans PD1222]
Length = 736
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 319/767 (41%), Positives = 440/767 (57%), Gaps = 72/767 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V I +G + +ETG + RQA G+V T GET + +V A P DFFPL V+YQ
Sbjct: 26 VKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQ 85
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF HE ++ VLS+D ++
Sbjct: 86 EKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVN 145
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLL 263
PD +A+ AA A+ +S VP IA RVG ++++NP Q+M+ + +LDL+
Sbjct: 146 DPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQRLDLV 205
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E L+E ++ AV+ G +A++ + + + L E K + +
Sbjct: 206 VAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAK----EPFEFA 261
Query: 324 PPE---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGI 380
P+ LY V+ + ++ I +K RR A+ + KVL LSE
Sbjct: 262 SPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEE----------- 310
Query: 381 VETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLR 440
+LL+ P L S K++ S LR
Sbjct: 311 -----ELLD-----------------------------PNLGS------ALKKLESGILR 330
Query: 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
I++G R DGR +RPI G LPR HGS+LFTRGETQ+L V TLG Q ID
Sbjct: 331 GGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIID 390
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
L + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTI
Sbjct: 391 ALHGNSR-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTI 449
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
RV S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+
Sbjct: 450 RVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEE-----DGRWAVLT 504
Query: 621 DITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
DI G ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 505 DILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHILGEMSK 564
Query: 681 CSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKIT 740
S HAP I M + +KI +IGSGGK ++ I+E +G + +D DDGT+KI
Sbjct: 565 ALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAK-VDISDDGTIKIA 623
Query: 741 AKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSN 800
+ + S++K+ +I ++ P G IY +K + +G FV R+GL H+S+++
Sbjct: 624 SANADSIKKAYDMIYSIVAEPEEGKIYVGKVVK-LVDFGAFVNFFGKRDGLVHVSQIAGK 682
Query: 801 WLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
L +V+K G V VKL+ +D+G++RL + + E E P K
Sbjct: 683 RLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIAPEK 729
>gi|413958296|ref|ZP_11397535.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. SJ98]
gi|413940876|gb|EKS72836.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. SJ98]
Length = 712
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 318/756 (42%), Positives = 440/756 (58%), Gaps = 65/756 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 11 WGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 71 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDVPADIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 131 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVAGTERAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
LSEE+++ AV G + ++ + + LV GKP+ D P E L V EI
Sbjct: 191 SEAQQLSEEVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEI 249
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSE----NGYVSKDE-TVGIVETIPDLLE 389
A EL Q++NK R L + L+E G V+ D TVG V
Sbjct: 250 AKPELEAAYQLRNKQARSAKLKEVYAATSAKLAEEAATGGTVAADAATVGNV-------- 301
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
LF ++ +K +R +I+ G R
Sbjct: 302 -------------------------------LF----------DIEAKIVRTQILNGEPR 320
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +
Sbjct: 321 IDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYR-E 379
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITES
Sbjct: 380 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITES 439
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED
Sbjct: 440 NGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHL 493
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M P + L
Sbjct: 494 GDMDFKVAGTSQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAVPTTNTEL 553
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + +
Sbjct: 554 SDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSAEGMAD 612
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I N+T VG +Y +K + +G V I PG++GL HISE+ + + D +
Sbjct: 613 AKKRIENITAEVEVGQVYEGPVLK-LLDFGAIVNILPGKDGLLHISEIVNERVKDINDYL 671
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
K G +V VK+I+ ++KG++RLS +ALL E + P
Sbjct: 672 KEGQIVKVKVIQTDEKGRVRLSAKALLNEGAQQAEP 707
>gi|345874270|ref|ZP_08826084.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri LMG
5135]
gi|343970543|gb|EGV38716.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri LMG
5135]
Length = 726
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 315/755 (41%), Positives = 446/755 (59%), Gaps = 64/755 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 28 YGEHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLTVDYLERTYAA 87
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 88 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 147
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NP +E SQLDL++AG+ A+LM+E
Sbjct: 148 MIGASAALVLSGVPFAGPIGAARVGYVNGNYVLNPNKSVLEQSQLDLVVAGTAKAVLMVE 207
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G + ++ + N + + P++ D K P EL V E
Sbjct: 208 SEAQVLPEDIMLGAVVYGHEQMQAVINAINEFADAV-NPEVWDW-KAPETNEELVAKVRE 265
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I+G + + +I+ K R L DE V+ D L E+
Sbjct: 266 ISGATIAEAFKIRQKQARSAKL-------------------DEAWAAVK---DALITEET 303
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + ++K +FK++ + +R +I++G R DGR
Sbjct: 304 D--------------------------TLTANEIKGIFKQLEADVVRGQILDGQPRIDGR 337
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPI+ + G+LPR HGSALFTRGETQ+LAV TLG ++ Q ID L S + RF L
Sbjct: 338 DTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDAL-SGEYTDRFML 396
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNGSS
Sbjct: 397 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNGSS 456
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 457 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFA------VLTDILGDEDHLGDMD 510
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL+QAK+ R HILA+M + P LS+HA
Sbjct: 511 FKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMKEAVDGP-QELSQHA 569
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI +TG E I+ +DGTV I A + + +K
Sbjct: 570 PRLFTMKINQDKIRDVIGKGGETIRSITADTGTE-INIAEDGTVTIAATTQEAGDAAKKR 628
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 629 IEEITAEVEVGKVYDGTVLKLLDNNVGAIVSVIPGKDGLVHISQIAHERVKNVSDYLQVG 688
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL--PEADAENPP 845
V VK +EV+D+G++RLS +ALL PE + P
Sbjct: 689 QNVKVKALEVDDRGRVRLSIKALLEAPEREQRAEP 723
>gi|114705224|ref|ZP_01438132.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
HTCC2506]
gi|114540009|gb|EAU43129.1| polyribonucleotide nucleotidyltransferase [Fulvimarina pelagi
HTCC2506]
Length = 711
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 318/748 (42%), Positives = 448/748 (59%), Gaps = 64/748 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R++ +ETG + RQA GAV T GET++ +V P DFFPL VNYQE+
Sbjct: 7 VEIDWAGRRLTLETGKIARQADGAVLATYGETVVMATVVSEKQPKAGFDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GGFFKREGR + E L RLIDRP+RP +G+ ++TQ++ VL +D + P
Sbjct: 67 TFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFAEGYKNDTQVVLTVLQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I G RVG + ++ VNP EM +S LDL++AG+ DA+
Sbjct: 127 DVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYKVNPNVDEMPESALDLVVAGTKDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPE---L 327
LM+E LSE++++ AV G + + + + + L E+ K P+ + P+ L
Sbjct: 187 LMVESEAHELSEDVMLGAVMEGHRSFQPVIDAIIKLAEVAAKEPREHNA-----PDHSAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ ++A ++L +I +K R A+++ +EKV+ L
Sbjct: 242 EGEMLKLAEDDLRAAYKITDKQERTNAVATAKEKVVAHF--------------------L 281
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E EDE PK F++ +V VFK + +K +R I++
Sbjct: 282 PEGEDE------------------PK--------FTKEEVNAVFKSLQAKIVRWNILDTQ 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +R I S G+LPR HGSALFTRGETQ+L V TLG + Q +D L +
Sbjct: 316 SRIDGRSLDTVRKIVSEVGILPRTHGSALFTRGETQALVVATLGTGEDEQFVDALTGTYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+R S IT
Sbjct: 376 -ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAAEQFPYTLRAVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA DAGVP+K +AG+AMG++ + + F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGTSLAFMDAGVPLKRPVAGIAMGLIKEGERFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E+GIT+ QMDIK+ GIT +MK AL QAK GR HIL EM K +
Sbjct: 489 HLGDMDFKVAGTEEGITSLQMDIKIQGITEEIMKVALDQAKGGRVHILGEMNKALGEARS 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
L + AP I +M++ +KI +IGSGGK ++ I+E+TG + I+ +DDG +KI + +
Sbjct: 549 ELGEFAPRIEVMQIPTDKIRDVIGSGGKVIREIVEKTGAK-INIDDDGVIKIASSSGKEI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E +K I ++ P VG++Y +K++ +G FV R+GL HIS+L +AK D
Sbjct: 608 EAAKKWIHSIVAEPEVGEVYEGTVVKTV-EFGAFVNFFGSRDGLVHISQLGEGRVAKTTD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
VVK GD V VKL+ +++G++RLS + +
Sbjct: 667 VVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|392412361|ref|YP_006448968.1| polyribonucleotide nucleotidyltransferase [Desulfomonile tiedjei
DSM 6799]
gi|390625497|gb|AFM26704.1| polyribonucleotide nucleotidyltransferase [Desulfomonile tiedjei
DSM 6799]
Length = 695
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/740 (42%), Positives = 435/740 (58%), Gaps = 60/740 (8%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
++I+ ETG + +Q+SGAV + GET++ + E DFFPL V+Y E AAG+
Sbjct: 12 KEIVFETGRLAKQSSGAVLASTGETMVLVTAVAEKKGREGIDFFPLTVDYLEMTYAAGKI 71
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GG+FKREGR + E+L R IDRP+RP KGF ETQI++ VLS DG + PD L +
Sbjct: 72 PGGYFKREGRPTEKEILTARFIDRPIRPLFPKGFTAETQIIATVLSSDGENDPDMLGING 131
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A+ LS++P + I VRVG V I+NPT+ E S L L++ GS I+M+EG
Sbjct: 132 ASAALHLSDIPFAGPIGAVRVGRVEGNVIINPTSLEDSYSDLSLIVVGSRLGIVMVEGGS 191
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
D L EE++++A+ D + +I + L E+ GKPK EL + + GE
Sbjct: 192 DKLPEEVILEAIFKAYDEILKIVEAQEKLRELAGKPKREIVAPTEDSELIEKIIATWGER 251
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ + + I+ K+PRR AL+ + +++L+ + E+ + E +G +E +
Sbjct: 252 IGQAVTIREKLPRRDALNQIYDEILSSV-EDAEHRRLEILGYLEKL-------------- 296
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
EG +++R I+E G R DGR I
Sbjct: 297 ------EG------------------------------RYIRNLIIEKGVRVDGRGFKEI 320
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPI++ G LPR HGSALFTRGETQ+L ++TLG Q+++ LE K F L Y FP
Sbjct: 321 RPITTEVGTLPRTHGSALFTRGETQALVIVTLGTSSDEQKVEALEGAS-YKSFMLHYKFP 379
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGEV + PSRRE+GHG LA+RA++ +LP+D DFPYTIRV S I ESNGSSSMA+V
Sbjct: 380 PFSVGEVKFLRGPSRREVGHGALADRAIQYLLPNDEDFPYTIRVVSEILESNGSSSMATV 439
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG L+L DAGVP+ +AG+AMG++ + D +ILSDI G ED GDMDFKVAG
Sbjct: 440 CGASLSLMDAGVPLLEPVAGIAMGLLQENDRI------IILSDIIGDEDHHGDMDFKVAG 493
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
G+TA QMDIK+ GIT ++ +AL QAK+GR HIL EM K P +S+HAP I I
Sbjct: 494 TTTGVTALQMDIKIQGITREILTEALYQAKEGRLHILGEMAKTLDKPRAEISRHAPRIFI 553
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M V P+KI IIG GGK +++I EETG + I+ +D G V I + D ++K I +T
Sbjct: 554 MFVNPDKIRDIIGPGGKIIRAIQEETGTK-IEVDDTGKVVIASADSDGALQAKLAIQKIT 612
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
+G IY ++ + +G FVEI PG +GL HIS+L+ + K DVVK GD VK
Sbjct: 613 QEAEMGKIYMGT-VRKVTDFGAFVEIFPGTDGLVHISQLAPERVRKVTDVVKEGDSFPVK 671
Query: 819 LIEVNDKGQLRLSRRALLPE 838
+I ++ G+++LSR+ + E
Sbjct: 672 VIGIDPNGKIKLSRKDAIGE 691
>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
adenylyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
Polynucleotide adenylyltransferase (EC 2.7.7.19)
[Burkholderia rhizoxinica HKI 454]
Length = 768
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 315/744 (42%), Positives = 438/744 (58%), Gaps = 55/744 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 57 WGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVAAKSAKPGQDFFPLTVDYIEKTYAA 116
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 117 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSINPDIPADIPA 176
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + I RV + ++F++NPT + + S+LDL++AG++ A+LM+E
Sbjct: 177 MIGASAALAISGIPFNGPIGAARVAYIDNQFVLNPTRSQSKASKLDLVVAGTERAVLMVE 236
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L EE+++ AV G + ++ + + LV+ GKP+ D P E L V E+
Sbjct: 237 SEADQLPEEVMLGAVVFGHEQMQVAIDAIHDLVKEGGKPEW-DWQPAPKDEALIARVTEL 295
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL QI+ K R L + V L+E V+ V T+ ++L D
Sbjct: 296 ALAELQAAYQIRQKQQRSAKLKEVYAAVTAKLAEQS-VAAGTAVVDAATVGNILFD---- 350
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
+ ++ +R +I+ G R DGR
Sbjct: 351 ---------------------------------------LEARIVRSQILNGEPRIDGRD 371
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPRAHGSALFTRGETQ+L V TLG K Q ID +E + +RF L
Sbjct: 372 TRTVRPIEIRTGVLPRAHGSALFTRGETQALVVATLGTKGDEQIIDAIEGEYR-ERFMLH 430
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+R+L P LP D++F YTIRV S ITESNGSSS
Sbjct: 431 YNMPPFATGETGRVGSPKRREIGHGRLAKRSLVPCLPGDDEFGYTIRVVSEITESNGSSS 490
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 491 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 544
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG G+TA QMDIK+ GIT +M+ AL QA++GR HIL +M P + LS+ AP
Sbjct: 545 KVAGTAQGVTALQMDIKIQGITKEIMQVALAQAREGRLHILDKMTSAVPSTNMQLSQFAP 604
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ MK+ PEKI +IG GG ++++ EET ID DDG V I + + ++K I
Sbjct: 605 RMITMKINPEKIRDVIGKGGSVIRALTEETNT-TIDISDDGVVTIASTSPEGMAEAKKRI 663
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG IY +K + +G V I PGR+GL HISE+++ + D +K G
Sbjct: 664 ENITAEVEVGQIYEGAILK-LLDFGAIVNILPGRDGLLHISEIANERIKDINDYLKEGQQ 722
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE 838
V VK+I+ ++KG++RLS +ALL E
Sbjct: 723 VKVKVIQTDEKGRVRLSVKALLNE 746
>gi|187610326|sp|A1B5P9.2|PNP_PARDP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 715
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 319/767 (41%), Positives = 440/767 (57%), Gaps = 72/767 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V I +G + +ETG + RQA G+V T GET + +V A P DFFPL V+YQ
Sbjct: 5 VKKSIQWGQETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF HE ++ VLS+D ++
Sbjct: 65 EKYYAAGKIPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLL 263
PD +A+ AA A+ +S VP IA RVG ++++NP Q+M+ + +LDL+
Sbjct: 125 DPDIVAMIAASAALTISGVPFMGPIAAARVGFADGEYVLNPEVQDMDHLRLNPEQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E L+E ++ AV+ G +A++ + + + L E K + +
Sbjct: 185 VAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIIDLAEAAAK----EPFEFA 240
Query: 324 PPE---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGI 380
P+ LY V+ + ++ I +K RR A+ + KVL LSE
Sbjct: 241 SPDYSALYARVKSLGEADMRAAYAIHDKGERRDAIEVAKAKVLAGLSEE----------- 289
Query: 381 VETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLR 440
+LL+ P L S K++ S LR
Sbjct: 290 -----ELLD-----------------------------PNLGS------ALKKLESGILR 309
Query: 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
I++G R DGR +RPI G LPR HGS+LFTRGETQ+L V TLG Q ID
Sbjct: 310 GGIIDGRPRIDGRDNKTVRPIDCEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIID 369
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
L + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTI
Sbjct: 370 ALHGNSR-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTI 428
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
RV S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+
Sbjct: 429 RVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEE-----DGRWAVLT 483
Query: 621 DITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
DI G ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 484 DILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRLHILGEMSK 543
Query: 681 CSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKIT 740
S HAP I M + +KI +IGSGGK ++ I+E +G + +D DDGT+KI
Sbjct: 544 ALSEGRREFSAHAPRIETMTIPTDKIREVIGSGGKVIREIVETSGAK-VDISDDGTIKIA 602
Query: 741 AKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSN 800
+ + S++K+ +I ++ P G IY +K + +G FV R+GL H+S+++
Sbjct: 603 SANADSIKKAYDMIYSIVAEPEEGKIYVGKVVK-LVDFGAFVNFFGKRDGLVHVSQIAGK 661
Query: 801 WLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
L +V+K G V VKL+ +D+G++RL + + E E P K
Sbjct: 662 RLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIAPEK 708
>gi|399074264|ref|ZP_10750906.1| polyribonucleotide nucleotidyltransferase [Caulobacter sp. AP07]
gi|398040577|gb|EJL33677.1| polyribonucleotide nucleotidyltransferase [Caulobacter sp. AP07]
Length = 716
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 438/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNY E+
Sbjct: 9 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLTVNYIEKTY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 69 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQHDLENDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
+A+ AA A+ +S P I G RVG V ++++NPT E+++S++DL++AG+ DA++M
Sbjct: 129 VAMVAASAALVISGAPFMGPIGGARVGYVNGEYVLNPTLDELKESKMDLVVAGTADAVMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V A++ + + + L E K P+ D +K
Sbjct: 189 VESEIQELSEEIVLGGVTFAHKAMQAVIDGIIELAEHAAKEPFDFQPEDTDALK------ 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V++ G++L + I+ K R ALS + K + +++
Sbjct: 243 -AEVKKAVGKDLAEAYTIRAKGDRVAALSDAKAKAVEKFAKS------------------ 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+ P + + VFKE+ + +RR I++ G
Sbjct: 284 ----------------------------DTNPAGIDPLKLISVFKELEADIVRRSILDTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 316 IRIDGRTVDKVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ DFPYTIR+ S IT
Sbjct: 376 -ESFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRALRPMLPAKEDFPYTIRLVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGSSLAMMDAGVPLIRPVSGIAMGLILEKDGFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+T+ QMDIK+ GIT +MK+AL QAK GR HIL EM K P
Sbjct: 489 HLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQALAQAKGGREHILEEMNKAMDAPRE 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ +AP I + + +KI +IG+GGK ++ I+ TG + +D D+GTVK++A D + +
Sbjct: 549 EVGDYAPKIETITIPTDKIREVIGTGGKVIREIVATTGAK-VDINDEGTVKVSASDGAKI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T VG IY +K + +G FV ++GL H+S++S+ +AK D
Sbjct: 608 KAAIDWIKSITQEAEVGAIYDGKVVK-VVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 667 VLKEGQIVKVKLLGFDDRGKTKLSMKVV 694
>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
Length = 715
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 314/763 (41%), Positives = 444/763 (58%), Gaps = 66/763 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T+I +V A DFFPL V+Y E+ AA
Sbjct: 13 WGQHNVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPDVPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ V G + ++ + + LV GKP+ L V E+A
Sbjct: 193 SEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNEPLIARVTELA 252
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLEDE 391
EL+ QI++K R L + V L E+ G V+ D+ T+ ++L D
Sbjct: 253 QAELLAAYQIRDKQARSSKLKEVYAAVSAKLEEDAAASGTVAADKA-----TVGNVLFD- 306
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ +K +R +I+ G R D
Sbjct: 307 ------------------------------------------IEAKIVRTQILNGEPRID 324
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF
Sbjct: 325 GRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYR-ERF 383
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNG
Sbjct: 384 MLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNG 443
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GD
Sbjct: 444 SSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGD 497
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+
Sbjct: 498 MDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSE 557
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K
Sbjct: 558 FAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAK 616
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K
Sbjct: 617 KRIENITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKD 675
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
G V VK+I+ ++KG++RLS +ALL + + P G+PT
Sbjct: 676 GQQVKVKVIQTDEKGRVRLSAKALLNDGAS-----SAPQGEPT 713
>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase [Burkholderia mallei ATCC 23344]
gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
SAVP1]
gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase [Burkholderia mallei NCTC 10229]
gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase [Burkholderia mallei NCTC 10247]
gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|81604650|sp|Q62IN1.1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470944|sp|A3MI97.1|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470945|sp|A2S463.1|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470946|sp|A1V2L2.1|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
23344]
gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
SAVP1]
gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10229]
gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10247]
gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
Length = 713
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 318/753 (42%), Positives = 453/753 (60%), Gaps = 57/753 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G +++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQQKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L+ L+E Y + + +
Sbjct: 252 AQPELLAAYQIRDKQAR---LTKLKEV---------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE V G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 285 EEAVAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG DG+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGHVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE--ADAENPP 845
V VK+I+ ++KG++RLS +ALL E A A+ PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAAQADTPP 711
>gi|227112579|ref|ZP_03826235.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 706
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 308/748 (41%), Positives = 437/748 (58%), Gaps = 66/748 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT E+++S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E D LSE+ ++ AV G + + + + ALV GKPK + PE
Sbjct: 183 EGAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKW----EWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R + ++ V+ L ++DET
Sbjct: 239 NVSLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQ-----AEDET------ 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ D++ + V +R R+
Sbjct: 288 --------------------------------------LNAGDIQEILGNVEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLS 831
K D +++G V VK++EV+ +G++RLS
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|433676724|ref|ZP_20508800.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. translucens DSM 18974]
gi|440730779|ref|ZP_20910848.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas translucens
DAR61454]
gi|430818158|emb|CCP39118.1| polyribonucleotide nucleotidyltransferase [Xanthomonas translucens
pv. translucens DSM 18974]
gi|440377097|gb|ELQ13751.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas translucens
DAR61454]
Length = 702
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/742 (41%), Positives = 447/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
LSEE+++ AV G ++++ N + L VE KP D + E + ++E
Sbjct: 190 SEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPS--DWVAPAKNEGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ V
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLAQLTPRAAV--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG + D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WVVADLSKEFGELEYQTMRGSVLSTKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS + G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISVKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSMEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGEDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+AL QAK GR HIL EM P + LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASALTTPRSELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +KA
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKAR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS+ + K DV+K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSDRVEKVSDVLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVKVKVLEVDKQGRIRLSMKAV 693
>gi|359788092|ref|ZP_09291075.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359256145|gb|EHK59021.1| polynucleotide phosphorylase/polyadenylase [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 715
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 320/763 (41%), Positives = 454/763 (59%), Gaps = 56/763 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R +++ETG + RQA GAV T GETI+ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLILETGKIARQADGAVLATYGETIVLATVVSAKEPKPGFDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAEGYKNDTQVVVTVVQHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L++ A A+ LS VP I G RVG + ++++NP EME+S+LDL++AG+ DA+
Sbjct: 127 DILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHVDEMEESKLDLIVAGTGDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E L E++++ AV G + + +D I
Sbjct: 187 LMVESEAKELPEDVMLGAVMFGHRGFQPV----------------IDAI----------- 219
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+K+ ++ K PR + L E T+L G V D T+
Sbjct: 220 --------IKLAEVAAKEPRDHQVKDLSELEATML---GMVEDDLRAAYKNTLK------ 262
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++ VD + + P+ ++T +V+ VFK++ +K +R I++ G R D
Sbjct: 263 -QERYAAVDTAKAKVKAALLPEGAETTTWTSEQVNA--VFKDLQAKIVRWNILDTGSRID 319
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +R I S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L + ++F
Sbjct: 320 GRDLKTVRQIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYK-EKF 378
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ + FPYT+RV S ITESNG
Sbjct: 379 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPAADAFPYTLRVVSEITESNG 438
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP+ +AG+AMG++ + + F +LSDI G ED GD
Sbjct: 439 SSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGERFA------VLSDILGDEDHLGD 492
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG + GITA QMDIK+ GIT +MK AL QA++GR HIL EM K + L +
Sbjct: 493 MDFKVAGTQGGITALQMDIKIEGITEEIMKVALAQAQEGRVHILGEMSKAIAEGRSELGE 552
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I +M V +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI + + +E +K
Sbjct: 553 FAPRIEVMHVPTDKIRDVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASSNAKEIEAAK 611
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + P VG+IY +K+ A +G FV ++GL HIS+L+++ +AK DVVK
Sbjct: 612 KWIHTIVAEPEVGEIYEGTVVKT-ADFGAFVNFFGPKDGLVHISQLANDRVAKTSDVVKE 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
GD V VKL+ +++G++RLS + + E E K G+ T
Sbjct: 671 GDKVFVKLMGFDERGKVRLSMKVVDQETGKEIVREKKAEGEET 713
>gi|350571866|ref|ZP_08940182.1| polyribonucleotide nucleotidyltransferase [Neisseria wadsworthii
9715]
gi|349791051|gb|EGZ44944.1| polyribonucleotide nucleotidyltransferase [Neisseria wadsworthii
9715]
Length = 709
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 320/766 (41%), Positives = 455/766 (59%), Gaps = 81/766 (10%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEVARQAAAAVKVSMGDTVVLVAVTTNKDVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSIDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG ++++NPT E+E SQ+DL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYADGQYLLNPTKTELETSQMDLVVAGTAKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQ-------DAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
L E++++ AV G DA+ E ++EV V P+ DT EL
Sbjct: 191 SEAQVLPEDVMLGAVVYGHEQMQVVIDAINEFADEVNPEVWDWKAPEA-DT------ELV 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRR----KALSSLEEKVLTILSENGYVSKDETVGIVETI 384
+ EIAG + + +I+ K R +A ++++E ++T
Sbjct: 244 AKIREIAGGTIGEAFKIRQKQARTAKLDEAWNAVKESLIT-------------------- 283
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+E D I + +K +FK++ + +R +I+
Sbjct: 284 -------------------EETDTLIANQ-------------IKGIFKQLEADVVRGQIL 311
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+G R DGR +RPI+ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L +
Sbjct: 312 DGQPRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-N 370
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ RF L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S
Sbjct: 371 GEYTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVS 430
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G
Sbjct: 431 EITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILG 484
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QAK+ R HILA+M +
Sbjct: 485 DEDHLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARMHILAQMKEAVDG 544
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P LS+HAP + MK+ P+KI +IG GG+ +++I ETG E I+ +DDGTV I A
Sbjct: 545 P-QELSQHAPRLFTMKINPDKIRDVIGKGGETIRAITAETGTE-INIDDDGTVTIAAVAG 602
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIA-PYGVFVEIAPGREGLCHISELSSNWLA 803
+ E +K I +T VG +Y +K + G V + PG++GL H+S+++ +
Sbjct: 603 EAGEAAKRRIEEITAEVEVGKVYEGTVLKILENNVGAIVSVLPGKDGLVHVSQIAHERVN 662
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
D +KVG V+VK +EV+D+G++RLS +A L EA A P + P
Sbjct: 663 NVADYLKVGQTVNVKALEVDDRGRVRLSIKA-LAEAPAREPREQQP 707
>gi|7716531|gb|AAF68421.1|AF237935_1 polynucleotide phosphorylase [Pasteurella multocida]
Length = 684
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/719 (42%), Positives = 427/719 (59%), Gaps = 56/719 (7%)
Query: 120 DGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRL 179
D T+ T V DV E DFFPL VNYQER AAGR GGFFKREGR + E L+ RL
Sbjct: 5 DDTTVFVTVVAKKDV-KEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARL 63
Query: 180 IDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRV 239
IDRP+RP +GFY+E QI++ V+S + PD +A+ A A++LS VP + I RV
Sbjct: 64 IDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARV 123
Query: 240 GLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVRE 299
G + D+F++NPT E + S+LDL++AG+D A+LM+E D L+EE ++ AV G +
Sbjct: 124 GFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQQQV 183
Query: 300 ISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLE 359
+ + +K GKP+ P L + V+ IA L + +I K R + + +++
Sbjct: 184 VIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVKAIAEARLGEAYRITEKQARYEQIDAIK 243
Query: 360 EKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTP 419
V I + ++ E ED E +VD
Sbjct: 244 ADV-----------------IAQITAEVAEGEDISEGKIVD------------------- 267
Query: 420 MLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTR 479
+F + S+ +R RI+ G R DGR D +R + G+LPR HGSA+FTR
Sbjct: 268 ----------IFTALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTR 317
Query: 480 GETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHG 539
GETQ+LAV TLG ++ AQ ID L + + F Y+FPP SVGE G IG+P RREIGHG
Sbjct: 318 GETQALAVATLGTERDAQIIDEL-TGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHG 376
Query: 540 TLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599
LA+R + V+P+ +FPY +RV S ITESNGSSSMASVCG LAL DAGVPIK ++AG+
Sbjct: 377 RLAKRGVAAVMPTLAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 436
Query: 600 AMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPV 659
AMG+V + ++F ++LSDI G ED GDMDFKVAG G+TA QMDIK+ GIT +
Sbjct: 437 AMGLVKEDEKF------VVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEI 490
Query: 660 MKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKS 719
M+ AL QAK R HIL M + P P +S AP I+ MK+ P+KI +IG GG +++
Sbjct: 491 MQIALNQAKSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRA 550
Query: 720 IIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYG 779
+ EETG +ID +DDGTVKI A D +S ++ A I ++T G +Y+ ++ +A +G
Sbjct: 551 LTEETGT-SIDIDDDGTVKIAAVDGNSAKEVMARIEDITAEVEAGAVYKG-KVTRLADFG 608
Query: 780 VFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
FV I +EGL HIS+++ + K D + VG V VK++E++ +G++RL+ + + P+
Sbjct: 609 AFVSIVGNKEGLVHISQIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPK 667
>gi|389573204|ref|ZP_10163279.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. M 2-6]
gi|388426901|gb|EIL84711.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. M 2-6]
Length = 705
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/747 (41%), Positives = 448/747 (59%), Gaps = 66/747 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VETG + +QA+GAV V G+T + +S + P +P DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEP-KPLDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V K I+NP +++E S ++L++AG+ DAI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKLIINPNVEQLEQSDINLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----LYK 329
+E D + EE +++A+ G ++ + + +V+ GK K I +P E L +
Sbjct: 189 VEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKEK----IDIPLYEVDQALAE 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V+++A +L+K +Q+ K R A+S++++ V+ E
Sbjct: 245 EVKQLAEADLLKAIQVHEKHAREDAISAVKKAVV----------------------QKFE 282
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+E+ DE + + +V KLV EV RR I E R
Sbjct: 283 EEERDEATIKQAK---------------------DVLNKLVKNEV-----RRLITEEKVR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRP+SS GLLPR HGS LFTRG+TQ+L++ TLG Q +D L +E K
Sbjct: 317 PDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESK 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FP SVGE G + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ES
Sbjct: 376 RFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AG+AMG+V + + +L+DI G EDA
Sbjct: 436 NGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYY------TVLTDIQGMEDAL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG G+TA QMDIK+ G++ ++++ALQQAK GR IL ML P L
Sbjct: 490 GDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLSTIPASRGEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S++AP I M + P+KI +IG GK++ IIE+TGV+ ID E DGT+ I++ + +K
Sbjct: 550 SRYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVK-IDIEQDGTIFISSTEEDMNQK 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K II +L VG +Y ++K I +G F+EI G++GL HISEL+ + K EDVV
Sbjct: 609 AKKIIEDLVREVEVGQLYLG-KVKRIEKFGAFLEIFSGKDGLVHISELALERVGKVEDVV 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD + VK+ E++ +G++ LSR+A+L
Sbjct: 668 KIGDELLVKVTEIDKQGRVNLSRKAVL 694
>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
Length = 713
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/753 (41%), Positives = 449/753 (59%), Gaps = 57/753 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKTSRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L + Y + + +
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEV------------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE V G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 285 EEAVAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILSGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG DG+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGHVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE--ADAENPP 845
V VK+I+ ++KG++RLS +ALL E A A+ PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAAQADTPP 711
>gi|411001077|gb|AFV98805.1| acyl CoA thioester hydrolase [Candidatus Snodgrassella sp.
TA7_36335]
Length = 707
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/756 (41%), Positives = 445/756 (58%), Gaps = 64/756 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+GAV ++ G+T++ +V A DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFY++ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ L+ VP + I RVG V ++++NPT ++ SQLDL++AG++ A+LM+E
Sbjct: 131 MLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKNQLAQSQLDLVVAGTEKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK--PKMLD-TIKLPPPELYKHVE 332
D LSEE ++ AV G + ++ ++A+ E + P+M D + L V
Sbjct: 191 SEADVLSEETMLGAVVFGHE---QMQAAIRAINEFADEVNPEMWDWQAPVADESLIAKVR 247
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+AG + + +IK K R L V E I E LL ++
Sbjct: 248 ELAGATIDEAFKIKQKQARTAKLDEAWAAV-------------EAALITEETDTLLANQ- 293
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
++ +FK++ + +R +I+EG R DG
Sbjct: 294 ----------------------------------IRGIFKDLEKEVVRGQILEGQPRIDG 319
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI+ R G+LPR HGSALFTRGETQSLA TLG ++ Q ID L S + RF
Sbjct: 320 RDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQRDEQIIDAL-SGEYTDRFM 378
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGS
Sbjct: 379 LHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVEDFSYTMRVVSEITESNGS 438
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVC GCL+L +AGVP+K +AG+AMG++LD ++F +L+DI G ED GDM
Sbjct: 439 SSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFA------VLTDILGDEDHLGDM 492
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG G+TA QMDIK+ GIT +M+ AL QAK+ R +IL +M + P LS H
Sbjct: 493 DFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQEAVKGP-QELSAH 551
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + MK+ +KI +IG GG+ ++++ ETG E I+ +DGT+ I A + E +K
Sbjct: 552 APRLFTMKIHQDKIRDVIGKGGETIRALTAETGTE-INIAEDGTITIAASTSEAGEAAKR 610
Query: 753 IISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I +T VG +Y IK + G V + PG++GL HIS++S + + D +++
Sbjct: 611 RIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQISHDRVKNVSDYLQI 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
G V VK +E++D+G++RLS +ALL +A E P +
Sbjct: 671 GQQVKVKALEIDDRGRVRLSIKALLEKAPQEPKPAE 706
>gi|422421992|ref|ZP_16498945.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
S4-171]
gi|313638085|gb|EFS03354.1| polyribonucleotide nucleotidyltransferase [Listeria seeligeri FSL
S4-171]
Length = 723
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 448/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTHDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + +++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPELEVEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------VLSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS GLLPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ DFPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEDFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++++AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVQVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ LL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKVLLEKKEQPEGD 704
>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei K96243]
gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase [Burkholderia pseudomallei 1710b]
gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase [Burkholderia pseudomallei 668]
gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase [Burkholderia pseudomallei 1106a]
gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei DM98]
gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 14]
gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 91]
gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 9]
gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei B7210]
gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 7894]
gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei NCTC 13177]
gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 112]
gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BCC215]
gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237811578|ref|YP_002896029.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei MSHR346]
gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|386862398|ref|YP_006275347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026b]
gi|403518000|ref|YP_006652133.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BPC006]
gi|418389928|ref|ZP_12967744.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354a]
gi|418538035|ref|ZP_13103663.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026a]
gi|418541532|ref|ZP_13107010.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258a]
gi|418547776|ref|ZP_13112914.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258b]
gi|418553957|ref|ZP_13118757.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354e]
gi|81380050|sp|Q63VN7.1|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123599745|sp|Q3JUB3.1|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470947|sp|A3NTA2.1|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470948|sp|A3N7L3.1|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei K96243]
gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710b]
gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 668]
gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106a]
gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei MSHR346]
gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|385348795|gb|EIF55391.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026a]
gi|385357695|gb|EIF63735.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258a]
gi|385359817|gb|EIF65767.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258b]
gi|385370904|gb|EIF76126.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354e]
gi|385375882|gb|EIF80619.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354a]
gi|385659526|gb|AFI66949.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026b]
gi|403073643|gb|AFR15223.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BPC006]
Length = 713
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/753 (41%), Positives = 449/753 (59%), Gaps = 57/753 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L + Y + + +
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEV------------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE V G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 285 EEAVAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG DG+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGHVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE--ADAENPP 845
V VK+I+ ++KG++RLS +ALL E A A+ PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAAQADTPP 711
>gi|399055584|ref|ZP_10743279.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. CF112]
gi|398046793|gb|EJL39377.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. CF112]
Length = 715
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/752 (41%), Positives = 448/752 (59%), Gaps = 54/752 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R++ +E G M +QA+G+V V G+T I ++V ++ P + DFFPL VNY+ER A G+
Sbjct: 15 RKLTLEFGKMAKQANGSVLVRYGDTAILSAVTVSKEP-KALDFFPLTVNYEERLYAVGKI 73
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR + +L RLIDRP+RP +GF ++ QI++ VLS D P+ A+
Sbjct: 74 PGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNDVQIVNTVLSVDQDCSPEIAAMIG 133
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A+ +SE+P IAGV VG + +FI+NPT ++ E S + L++AG+ AI M+E
Sbjct: 134 TSAALCVSEIPFEGPIAGVIVGRIDGEFIINPTVEQAEKSDIHLVVAGTHKAINMVEAAA 193
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + E ++++A+ G + ++++ +V GK KM + PE+ + V E A
Sbjct: 194 NQVPESVMLEAIMAGHEVIKQLVEFQNQIVAEIGKEKMEVILHEVDPEIDQAVREFAEAR 253
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
L + ++I+ K R A+ +++E+ ++ + +KD
Sbjct: 254 LKEAVRIEEKQARYDAIDNIKEE-----TKEHFAAKD----------------------- 285
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
P++ + SEV +V EV RR I E R DGR + I
Sbjct: 286 -------------PEAYPEQEKMISEVLGNIVKDEV-----RRLITEEKVRPDGRALNEI 327
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RP+SS G+L R HGSA+FTRG+TQ+L+V TLG Q +D L +E KRF Y+FP
Sbjct: 328 RPLSSETGILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGL-GLEESKRFMHHYNFP 386
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + P RREIGHG L ERA+EP++PS+++FPYTIR+ S + ESNGS+S AS+
Sbjct: 387 PYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEHEFPYTIRLVSEVIESNGSTSQASI 446
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
C LAL DAGVPIK +AG+AMG+++ DE + IL+DI G ED GDMDFKVAG
Sbjct: 447 CASVLALMDAGVPIKAPVAGIAMGLIMSKDE----QSFSILTDIQGMEDHLGDMDFKVAG 502
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E G+TA QMDIK+ GI ++++AL+QA++GR HIL M+ P LS +AP I
Sbjct: 503 TEAGVTAIQMDIKISGINREILQQALEQAREGRLHILKHMMSTISEPRKELSPYAPKILT 562
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M + P+KI +IG G+ + IIEETGV+ ID E DG V I + + + ++K II +L
Sbjct: 563 MTINPDKIRDVIGPQGRVINKIIEETGVK-IDIEQDGRVFIASINHEANMRAKQIIEDLV 621
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG IY +K + YG F+E+ G+EGLCHIS+L+ +AK EDVV +GD V VK
Sbjct: 622 REVAVGQIYLGT-VKRVEKYGAFIELFAGKEGLCHISQLAEERVAKTEDVVAIGDKVQVK 680
Query: 819 LIEVNDKGQLRLSRRALLPEADAENPPVKLPT 850
+ E++D+G++ LSR+A+L E A K PT
Sbjct: 681 VTEIDDQGRINLSRKAVLKEQAAAAQADKAPT 712
>gi|349574284|ref|ZP_08886238.1| polyribonucleotide nucleotidyltransferase [Neisseria shayeganii
871]
gi|348014067|gb|EGY52957.1| polyribonucleotide nucleotidyltransferase [Neisseria shayeganii
871]
Length = 702
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 309/756 (40%), Positives = 451/756 (59%), Gaps = 74/756 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+GAV V+ G+T++ +V DFFPL V+Y ER AA
Sbjct: 11 YGNQTVSIETGEIARQAAGAVKVSMGDTVVLVAVTANKDVKPGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPAGFYHDIQIVATVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + ++++NP+ +++ SQLDL++AG+ A+LM+E
Sbjct: 131 MIGASAALVLSGVPFAGPIGAARVGYLNGEYVLNPSKTQLQQSQLDLVVAGTQKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----LYKHV 331
L E +++ AV G + ++ + + L + P++ D P E L + +
Sbjct: 191 SEAQELPESVMLGAVVYGHEQMQAVIRAINELADEV-NPEVWD---WQPAETDNALVEKI 246
Query: 332 EEIAGEELVKVLQIKNKIPRR----KALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
EIAG + + I+ K R +A ++++E ++T
Sbjct: 247 REIAGATIGEAFNIRQKQARSAKLDEAWAAVKEALIT----------------------- 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+E + +V + +K +FK++ + +R +I++G
Sbjct: 284 ----EETDTLVAN-------------------------QIKGIFKQLEADVVRGQILDGQ 314
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI+ + G+LPR HGSALFTRGETQ+LAV TLG ++ Q ID L S +
Sbjct: 315 PRIDGRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDAL-SGEY 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S IT
Sbjct: 374 TDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALIAVLPSPEEFSYTMRVVSEIT 433
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED
Sbjct: 434 ESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFA------VLTDILGDED 487
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QAK+ R HILA+M + P
Sbjct: 488 HLGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMKEAVDGP-Q 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS HAP + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A +
Sbjct: 547 ELSAHAPRLFTMKINQDKIRDVIGKGGETIRAITSETGTE-INIAEDGTITIAATSTEAG 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAE 806
E ++ I +T VG +Y +K + G V + PG++GL HIS+++ +
Sbjct: 606 EAARQRIEQITAEVEVGKVYEGTVLKILDNNVGAIVSVMPGKDGLVHISQIAHERVKDVN 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D +KVG V+VK +EV+D+G++RLS +ALLP +AE
Sbjct: 666 DYLKVGQTVNVKALEVDDRGRVRLSIKALLPMPEAE 701
>gi|116872762|ref|YP_849543.1| polynucleotide phosphorylase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123460999|sp|A0AID2.1|PNP_LISW6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|116741640|emb|CAK20764.1| polynucleotide phosphorylase (PNPase) [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 723
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 446/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKVAIKTEEKKAREAAIEEVKEEIL-----ESYKAKE------------LENETE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ DFPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEDFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKALLEKKEQPEGD 704
>gi|315302988|ref|ZP_07873706.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
F6-596]
gi|313628638|gb|EFR97053.1| polyribonucleotide nucleotidyltransferase [Listeria ivanovii FSL
F6-596]
Length = 723
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/750 (41%), Positives = 448/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFDGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTHDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + +++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIDAVGKEKREIELFVSDPELEAEVKVAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------VLSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS GLLPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ DFPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEDFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++++AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILEEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQTMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVQVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ LL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKVLLEKKEQPEGD 704
>gi|392953990|ref|ZP_10319542.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
gi|391857889|gb|EIT68419.1| Polyribonucleotide nucleotidyltransferase [Hydrocarboniphaga effusa
AP103]
Length = 703
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 320/758 (42%), Positives = 439/758 (57%), Gaps = 64/758 (8%)
Query: 82 ALPSFPQPVSVK-IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD 140
A+ + P PV K +GD+ + ETGHM RQA+ AV V+ +T++ +V D
Sbjct: 2 AIHATPAPVIKKSFQYGDKTVTFETGHMVRQATAAVIVSVDQTVVMVTVVAKKEAKAGQD 61
Query: 141 FFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILS 200
FFPL V+Y ER A GR GGFFKREGR + E L RLIDRP+RP +GFY+E Q+++
Sbjct: 62 FFPLTVDYMERTYAGGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEGFYNEIQLVA 121
Query: 201 WVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQL 260
V+S + D A+ A A+ALS VP I +VG ++I+NP+ ++ SQL
Sbjct: 122 TVVSLNPEVDGDIPAMLGASAALALSGVPFQGPIGAAKVGYANGQYILNPSKTQLTTSQL 181
Query: 261 DLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI 320
DL++AG+ DA++M+E LSE++++ AV G ++ + LV G+P+
Sbjct: 182 DLVVAGTADAVMMVESEAKELSEDVMLGAVLYGHTQMQAAIRAINELVAEAGRPRWN--- 238
Query: 321 KLPPPELYKHVEEIAGEE--LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETV 378
P E I E +V + +K R AL ++ +
Sbjct: 239 WQPTAEAADLTTAIGAYEARVVDAYAVTDKGERYGALDAIRK------------------ 280
Query: 379 GIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKF 438
+ + L+ ED DEG V K F + S+
Sbjct: 281 ---DAVAALIAGED--------ARYDEGSV-------------------KDAFFNLESRV 310
Query: 439 LRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQR 498
+R RI++G R DGR +RPIS G+LPR HGSALFTRGETQ LAV TLG + AQ
Sbjct: 311 VRNRIIDGQPRIDGRDTRTVRPISIDVGVLPRTHGSALFTRGETQVLAVATLGTGKDAQL 370
Query: 499 IDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPS-DNDFP 557
ID + + F L Y+FPP SVGE GR+ AP RREIGHG LA+R + VLP + DFP
Sbjct: 371 IDAVGGEYR-DTFMLHYNFPPYSVGETGRLNAPKRREIGHGRLAKRGVAGVLPDLEKDFP 429
Query: 558 YTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPL 617
Y +RV S +TESNGSSSMASVCG CLAL DAGVP+K +AGVAMG++L+ + +
Sbjct: 430 YVVRVVSEVTESNGSSSMASVCGSCLALMDAGVPVKTPVAGVAMGLILEGNRYA------ 483
Query: 618 ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAE 677
+L+DI G ED GDMDFKVAG+ +GITA QMDIK+ G+ +MK+AL QA + R HIL +
Sbjct: 484 VLTDILGDEDHLGDMDFKVAGSRNGITALQMDIKITGVNGEIMKQALAQALEARLHILDQ 543
Query: 678 MLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTV 737
M + P P +S AP I +K+ P+KI +IG GG ++SI EETG ID +DDGTV
Sbjct: 544 MDQVLPAPRKEMSNWAPRITTIKIHPDKIREVIGKGGVTIRSITEETGT-TIDIDDDGTV 602
Query: 738 KITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISEL 797
K+ A D S+ + + A I +LT VG IY ++ + +G FV I PG++GL HIS+L
Sbjct: 603 KVAAVDKSAADAAIARILSLTRDVEVGTIYEG-KVAKLMDFGAFVTILPGKDGLVHISQL 661
Query: 798 SSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+ + K EDVVK G V VK++EV+ +G++RLS +A+
Sbjct: 662 ADKRVEKVEDVVKEGQAVRVKVLEVDKQGRIRLSMKAV 699
>gi|159045537|ref|YP_001534331.1| polynucleotide phosphorylase/polyadenylase [Dinoroseobacter shibae
DFL 12]
gi|187610298|sp|A8LKE7.1|PNP_DINSH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157913297|gb|ABV94730.1| polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae
DFL 12]
Length = 711
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 316/759 (41%), Positives = 438/759 (57%), Gaps = 66/759 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V + +G+ + +ETG + RQA G V T GET + +V A DFFPL V+Y
Sbjct: 5 VKKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLTVHYN 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D +
Sbjct: 65 EKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSHDLEN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLL 263
PD +A+ AA A+ +S VP IAG RVG ++++NP +M D +LDL+
Sbjct: 125 DPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E LSE ++ AV+ G + ++ + + + L E K + D
Sbjct: 185 VAGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAK-EPFDFQPAD 243
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
ELY V+ +++ I +K R A+S+ + +L LS
Sbjct: 244 YSELYAKVKAAGEDQMRAAFAITDKQERVTAISAARDAILATLS---------------- 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
DEE ++ P L S K++ S LR +
Sbjct: 288 ----------DEE-------------------QTDPNLGS------ALKKLESSILRGDV 312
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
V+ GRR DGR D +RPI S G+LPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 313 VKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALH 372
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIR+
Sbjct: 373 GNFK-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRLV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ +L+DI
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEE-----DGSYAVLTDIL 486
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG E+GIT+ QMDIKV GIT +M+KAL+QAK GR HIL EM K
Sbjct: 487 GDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKAGRLHILGEMSKALS 546
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+ S+HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 547 EGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGIIKIASAN 605
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+++K+ +I ++ P G +Y +K I +G FV R+GL H+S++ + L
Sbjct: 606 GEAIKKAYEMIHSIVAEPEEGKVYTGTVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLN 664
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DV+K G V VKL+ +D+G++RLS + + E E
Sbjct: 665 HPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEE 703
>gi|401765357|ref|YP_006580364.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|400176891|gb|AFP71740.1| polynucleotide phosphorylase/polyadenylase [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 712
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/744 (41%), Positives = 434/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E+++S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKESKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G D + + + LV+ GKP+ + L
Sbjct: 183 EAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEAANDAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + ++ +V L V++DET+
Sbjct: 243 NARVAALAESRLSDAYRITDKQERYAQVDVIKSEVTATL-----VAEDETL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D +E E+ + +R R++ G
Sbjct: 289 --DANEIGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P + FPYT+RV S IT
Sbjct: 373 TDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADKFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KFAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRIRLS 688
>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
Length = 707
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 313/749 (41%), Positives = 440/749 (58%), Gaps = 56/749 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
FGD + +ETG + RQA+GAV +T++ +V DFFPL V+Y E+ AA
Sbjct: 13 FGDHDVTLETGEIARQATGAVICRMDDTVVLATVVCKKEAKPGQDFFPLTVDYIEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L RLIDRP+RP GF++E Q++ VLS D PD A
Sbjct: 73 GRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFFNEVQVIIHVLSADPAVDPDIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P I RVG + DKF+VNPTT++++ S+LDL++AG+ A+LM+E
Sbjct: 133 MLGASAALAVSGIPFRGPIGACRVGYIDDKFVVNPTTEQLKTSRLDLVVAGTQRAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E+ ++ AV G ++ N + LV GKP D P E L + EI
Sbjct: 193 SEADILPEKTMLDAVVFGHREMQVAINAINELVAKAGKPAW-DWQPAPKNEALIARIVEI 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A + L + I++K PR + L + V L+ + + E
Sbjct: 252 ADKGLHEAYAIRSKQPRTEKLREVYALVEQTLAADAEAAGTEA----------------- 294
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
P + + +LF E+ + +R +I+ G R DGR
Sbjct: 295 -----------------PDANEVNGILF----------ELEAHLVRSQILAGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L TLG KQ Q ID L +++ RF L
Sbjct: 328 TRTVRPIEIRQGVLPRTHGSALFTRGETQALVTTTLGTKQDEQIIDGL-CEEQHDRFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL+ VLPS +F YT+RV S I ESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALKAVLPSPEEFQYTLRVVSEICESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCL++ DAGVP+K +AGVAMG++ + + F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E+G+TA QMDIK+ GIT +M+ AL QA DGR+HIL+ M + + + LS AP
Sbjct: 501 KVAGTENGVTALQMDIKIEGITPEIMQAALAQAHDGRQHILSRMHEMAGGGAKELSDFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ K+ PEKI +IG GG ++++ EETG I+ EDDG V I++ D++ + +++ I
Sbjct: 561 RMISFKINPEKIRDVIGKGGSVIRALTEETGT-TINVEDDGMVTISSPDMARVAEARRRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
+T G IY + + +G V++ PG++GL HIS++++ + D +K G
Sbjct: 620 EEITAEVEAGQIYEGT-VTRLLDFGAIVQLLPGKDGLLHISQIANERVNAVSDYLKEGQK 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADAEN 843
V VK+IE ++KG++RLS +ALL E + EN
Sbjct: 679 VRVKVIEADEKGRVRLSMKALLRE-EGEN 706
>gi|260584718|ref|ZP_05852464.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
ATCC 700633]
gi|260157741|gb|EEW92811.1| polyribonucleotide nucleotidyltransferase [Granulicatella elegans
ATCC 700633]
Length = 701
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/745 (40%), Positives = 448/745 (60%), Gaps = 62/745 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G R + VE G + +QA+GAV V G+T++ T+ + ++ +DFFPL VNY+E+ AA
Sbjct: 11 WGGRLLQVEIGQLAKQANGAVLVRYGDTVVLTA-AVGTKQAKDTDFFPLTVNYEEKMYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR +H L RLIDRP+RP +GF +E QI + V+S D P+ A
Sbjct: 70 GKIPGGFIKREGRPSEHATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVDPNCPPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG V ++++NPTT++ E S ++L +AG+ AI M+E
Sbjct: 130 MFGSSLALCISDIPFDGPIAGVDVGRVNGEYVINPTTEQAELSDIELSVAGTATAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE ++ A+ G + ++++ + +V+ GK KM T+ PE+ K V+++
Sbjct: 190 SSAKEVSEEDMLGALLFGHEEIKKLVAFQQQIVQEIGKEKMEVTLLSFDPEIEKQVKDLF 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVL----TILSENGYVSKDETVGIVETIPDLLEDE 391
+ ++ +Q + K+ R + + ++E L +L +N DE G+++ + L+++
Sbjct: 250 SQAMINAIQTEEKLAREENIEKVKETALEHFEAVLEDN-----DEKAGLLKQVSQLVDNL 304
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
++DE +RR I E R D
Sbjct: 305 EKDE-------------------------------------------VRRLITEEKVRPD 321
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRP+SS LLPR HGS LFTRG+TQ+L TL Q ID L +E KRF
Sbjct: 322 GRKIDEIRPLSSEIDLLPRVHGSGLFTRGQTQALTSATLAPLGEYQVIDGL-GIEEGKRF 380
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVG VGR G+P RREIGHG L ERAL+ V+P+ DFPYTIR+ S + ESNG
Sbjct: 381 IHHYNFPQFSVGSVGRAGSPGRREIGHGALGERALKQVIPTPEDFPYTIRLVSEVLESNG 440
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSS AS+C G LAL AGVPIK +AG+AMG++ D + +L+DI G ED GD
Sbjct: 441 SSSQASICAGTLALMAAGVPIKAPVAGIAMGLISDGTNY------TVLTDIQGLEDHLGD 494
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG GITA QMDIK+ GIT ++++AL QAK R IL E+ P LS
Sbjct: 495 MDFKVAGTTTGITALQMDIKIQGITEQILREALTQAKKARFEILEELTSTIAEPRKELSP 554
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I ++ + P+KI ++IG GG+ + SII+ETGV+ ID + +G V I + D + ++++K
Sbjct: 555 YAPKIEMISIHPDKIKVVIGRGGETINSIIDETGVK-IDIDQEGHVSIASTDAAMIQRAK 613
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
II +LT VG +Y ++ I +G FVEIA G++GL HISEL+ +AK EDV+ +
Sbjct: 614 EIIEDLTREIEVGQVYEGT-VRRIEKFGAFVEIAKGKDGLVHISELAHERVAKVEDVLAI 672
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD V VK+ E++ +G++ LSR+AL+
Sbjct: 673 GDKVKVKVTEIDGQGRINLSRKALI 697
>gi|336247349|ref|YP_004591059.1| polynucleotide phosphorylase/polyadenylase [Enterobacter aerogenes
KCTC 2190]
gi|444354538|ref|YP_007390682.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[Enterobacter aerogenes EA1509E]
gi|334733405|gb|AEG95780.1| polynucleotide phosphorylase/polyadenylase [Enterobacter aerogenes
KCTC 2190]
gi|443905368|emb|CCG33142.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[Enterobacter aerogenes EA1509E]
Length = 711
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/744 (40%), Positives = 436/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G + + + + LV+ GKP+ ++ L
Sbjct: 183 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEVVDAAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + ++ + + L V++DET+
Sbjct: 243 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATL-----VAEDETL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D +E E+ + +R R++ G
Sbjct: 289 --DANELGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIDEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 QHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|385853552|ref|YP_005900066.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|421554520|ref|ZP_16000461.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98008]
gi|427828474|ref|ZP_18995490.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|316983743|gb|EFV62724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|325200556|gb|ADY96011.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
H44/76]
gi|402332480|gb|EJU67805.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98008]
Length = 706
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V E
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|225181391|ref|ZP_03734835.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
alkaliphilus AHT 1]
gi|225167972|gb|EEG76779.1| Polyribonucleotide nucleotidyltransferase [Dethiobacter
alkaliphilus AHT 1]
Length = 721
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/750 (40%), Positives = 443/750 (59%), Gaps = 59/750 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K+ R++ +ETG + +QASG+V + G+T++ ++ + P E DFFP+ V+Y+ER
Sbjct: 5 KMQLAGRELSIETGRIAKQASGSVVLRYGDTVVLSTATASAEPREGVDFFPMTVDYEERL 64
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
A G+ GGF KREGR + +L RL DRP RP KGF + I++ VLS D + P+
Sbjct: 65 YAVGKIPGGFIKREGRPTEKAILSARLTDRPCRPLFPKGFRNAVHIVTTVLSVDQDNPPE 124
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
L++ A A+++S +P + ++ V VG + K ++NP ++ E S+L L++A + D I+
Sbjct: 125 VLSIVGASAALSISNIPFAGPLSAVVVGWIDGKPVINPNQEQAEQSKLHLVVASTKDGIM 184
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E L+E+ +++A+ G DA +EI + +V G+ KM + P E+ + V
Sbjct: 185 MVEAGAHELTEDEVLEAIMAGDDANKEIVALQEQMVAEVGQEKMQVNVFQPDAEVAEQVR 244
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
+ +++ + ++ K R A+S +K ET+
Sbjct: 245 QFCSDKVAQAVRTIEKHARETAISE---------------AKKETI-------------- 275
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E I P++ K DVK+ F+ + + +R I++ R DG
Sbjct: 276 ------------EHFAEIFPENEK---------DVKVAFENLVKETMRTMILKENLRPDG 314
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +D IRP++S G+LPR HGS LFTRG+TQ L V TLG QR+D L +E KR+
Sbjct: 315 RKSDEIRPVTSEVGILPRTHGSGLFTRGQTQVLNVCTLGAPGEVQRLDGL-GLEESKRYM 373
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE G + SRR+IGHG LAE+AL PVLPS+ DFPYTIR+ S + ESNGS
Sbjct: 374 HHYNFPPYSVGEAGFMRGASRRDIGHGALAEKALVPVLPSEEDFPYTIRLVSEVVESNGS 433
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSM SVCG L++ DAGVP+K ++GVAMG++++ D+ ILSDI G ED GDM
Sbjct: 434 SSMGSVCGSTLSMMDAGVPLKKPVSGVAMGLIVEGDDVA------ILSDIQGMEDFLGDM 487
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +GITA QMDIK+ G++ ++ KALQQAKDG HI+ +M + P P LS H
Sbjct: 488 DFKVAGTPEGITALQMDIKIKGLSREILTKALQQAKDGYMHIMNKMTEVIPEPRKELSPH 547
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I + + P+KI +IG GGK + I+ ET + ID E DGT+ I A S +K+
Sbjct: 548 APRIMTININPDKIRDVIGPGGKMINKIVAETDAD-IDIEPDGTIYIAAVSPESGKKALE 606
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
+I +LT G++Y ++ + YG FVEI PG++GL HIS L+ + K EDVV +G
Sbjct: 607 MIESLTKEVQPGEVY-TGKVTRVEKYGAFVEILPGKDGLVHISRLAHERVEKTEDVVNIG 665
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D + VK+I ++D+G++ LSRRA +P A E
Sbjct: 666 DEIPVKVIGIDDRGRIDLSRRAAIPNAQGE 695
>gi|418939579|ref|ZP_13492972.1| Polyribonucleotide nucleotidyltransferase [Rhizobium sp. PDO1-076]
gi|375053693|gb|EHS50095.1| Polyribonucleotide nucleotidyltransferase [Rhizobium sp. PDO1-076]
Length = 713
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 317/749 (42%), Positives = 447/749 (59%), Gaps = 65/749 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE
Sbjct: 6 SVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKSPKPGQDFFPLTVNYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GG+FKREGR + E LV RLIDRP+RP +G+ ++TQ++ V+ +D +
Sbjct: 66 KTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQHDLEND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L++ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ DA
Sbjct: 126 PDVLSMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVAGTQDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKML---DTIKLPPPE 326
+LM+E L+EE+++ AV G + + + + L E+ K P+ D +L E
Sbjct: 186 VLMVESEAKELNEEIMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFQPEDHSELEA-E 244
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+ KH E EL + K R A+ +++ KV
Sbjct: 245 MLKHFEA----ELRTAYKNTQKAERYAAVDAVKAKV------------------------ 276
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ + P +EV + FK + +K +R I++
Sbjct: 277 --------------------KAHFFPEGVE--PKYTAEV-IGATFKHLQAKIVRWNILDT 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +R I S G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 314 KSRIDGRDLSTVRAIVSEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ +RF L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS FPYT+RV S I
Sbjct: 374 K-ERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++L+ + F +LSDI G E
Sbjct: 433 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFA------VLSDILGDE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGIT+ QMDIK+ GIT +MK AL+QA+ GR+HIL EM
Sbjct: 487 DHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALEQAQGGRKHILGEMANAITEGR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+ L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ EDDGTVKI +
Sbjct: 547 SQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIEDDGTVKIASASGKE 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG +Y +K+ A +G FV R+GL HIS+L+S+ +AK +
Sbjct: 606 IEAARKWIHSIVAEPEVGVVYEGTVVKT-ADFGAFVNFFGSRDGLVHISQLASDRVAKTQ 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK G V VKL+ +++G++RLS +A+
Sbjct: 665 DVVKEGQKVWVKLMGFDERGKVRLSMKAV 693
>gi|317495525|ref|ZP_07953893.1| polyribonucleotide nucleotidyltransferase [Gemella morbillorum
M424]
gi|316914339|gb|EFV35817.1| polyribonucleotide nucleotidyltransferase [Gemella morbillorum
M424]
Length = 695
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/733 (41%), Positives = 442/733 (60%), Gaps = 55/733 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ +++ VE G M RQA+ AV V G+T++ T+ +A ++ DFFPL VNY+E+ A
Sbjct: 12 WAGKELTVELGEMARQANAAVVVKYGDTVVLTT-AVASKEAKDVDFFPLTVNYEEKMYAV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF +REGR L RLIDRP+RP GF +E Q++S VLS + P A
Sbjct: 71 GKIPGGFLRREGRPGTEATLAARLIDRPIRPLFEDGFRNEVQVISTVLSVEYDCDPVMAA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+++S +P IAGV VG V ++++NP ++ E S++DL +AG+ DAI M+E
Sbjct: 131 MLGSSLALSVSNIPFKGPIAGVTVGYVDGEYVINPNVEQFEKSKIDLKVAGTKDAINMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+ +SEE+++ A+ G + ++ + + +V+ G+ KM +K+ +Y V +++
Sbjct: 191 AGAEEVSEEVMLNAIMFGHEEIKRLIAFQQQIVDEIGQEKMEVELKVIDENIYNEVLDLS 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E+ + IK+K R +A+S ++E+VL + E DEDE
Sbjct: 251 LTEMKSAIAIKDKQERDEAISVVKERVLAVFEERVT--------------------DEDE 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+V + KL ++ +RR I E R DGR
Sbjct: 291 LDIVK-------------------------EAKLSLDKIVKDEVRREITEDKVRPDGRAL 325
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
IRP++SR +LPR HGSALFTRG+TQSL V+TLG+ Q ID+L + +E KRF L Y
Sbjct: 326 TEIRPLASRIDVLPRTHGSALFTRGQTQSLGVVTLGNLSDEQIIDDL-TQEENKRFMLHY 384
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGEVG AP RREIGHG L ERAL V+PS DFPYTIR+ S I ESNGSSS
Sbjct: 385 NFPAFSVGEVGFSRAPGRREIGHGALGERALAQVIPSKEDFPYTIRIVSEILESNGSSSQ 444
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
A++C G +AL AGVPIK +AG+AMG+V + + IL+DI G ED GDMDFK
Sbjct: 445 ATICSGSMALMAAGVPIKAQVAGIAMGLVKKDEHY------TILTDIQGMEDHLGDMDFK 498
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +GITA QMDIK+ G++ ++K++L+QA+ GR IL M P +S AP
Sbjct: 499 VAGTSEGITALQMDIKIEGLSEQILKESLEQARVGRLQILDHMNNIISEPREEVSTFAPK 558
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I I+++KPEKI +IGSGGK + IIE+TGV+ ID E G V I++ ++ + K+ II
Sbjct: 559 IKIIRIKPEKIKDVIGSGGKVINEIIEKTGVK-IDIEQTGEVFISSPEIDGINKAIEIIE 617
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
N+T VG++Y E+K I +G FVE+ PG + L HIS+LS+ + K EDVVK+GD +
Sbjct: 618 NITREAEVGEVYL-AEVKRIEKFGAFVELFPGVDALVHISKLSAERVNKVEDVVKIGDTL 676
Query: 816 DVKLIEVNDKGQL 828
VK+I++++KG++
Sbjct: 677 KVKVIKIDEKGRV 689
>gi|145600553|ref|YP_001164629.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides F]
gi|153948233|ref|YP_001402546.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis IP 31758]
gi|153997470|ref|ZP_02022570.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|162418341|ref|YP_001608292.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis Angola]
gi|165925875|ref|ZP_02221707.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936694|ref|ZP_02225261.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010063|ref|ZP_02230961.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214313|ref|ZP_02240348.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167420765|ref|ZP_02312518.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423666|ref|ZP_02315419.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025941|ref|YP_001722446.1| polynucleotide phosphorylase/polyadenylase [Yersinia
pseudotuberculosis YPIII]
gi|218930504|ref|YP_002348379.1| polynucleotide phosphorylase [Yersinia pestis CO92]
gi|229839142|ref|ZP_04459301.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896631|ref|ZP_04511798.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|229899706|ref|ZP_04514847.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|270489142|ref|ZP_06206216.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294505190|ref|YP_003569252.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|384127519|ref|YP_005510133.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|384138659|ref|YP_005521361.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis A1122]
gi|384416192|ref|YP_005625554.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420559576|ref|ZP_15056058.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-03]
gi|420570002|ref|ZP_15065476.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-05]
gi|420628976|ref|ZP_15118487.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-16]
gi|420639412|ref|ZP_15127860.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-25]
gi|420715401|ref|ZP_15195392.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-56]
gi|420736882|ref|ZP_15214395.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-61]
gi|420742369|ref|ZP_15219324.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-63]
gi|420753503|ref|ZP_15228993.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-65]
gi|420780495|ref|ZP_15252516.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-88]
gi|420796718|ref|ZP_15266963.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-91]
gi|420801821|ref|ZP_15271544.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-92]
gi|420812538|ref|ZP_15281205.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-94]
gi|420834031|ref|ZP_15300572.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-99]
gi|421765000|ref|ZP_16201787.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis INS]
gi|123149978|sp|Q0WBF9.1|PNP_YERPE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611335|sp|A4TQU4.1|PNP_YERPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611342|sp|A7FMR8.1|PNP_YERP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611439|sp|Q1C3L8.2|PNP_YERPA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704837|sp|A9R5A9.1|PNP_YERPG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704838|sp|B1JLX6.1|PNP_YERPY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115349115|emb|CAL22078.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis CO92]
gi|145212249|gb|ABP41656.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Pestoides F]
gi|149289107|gb|EDM39187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
CA88-4125]
gi|152959728|gb|ABS47189.1| polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis IP 31758]
gi|162351156|gb|ABX85104.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Angola]
gi|165915343|gb|EDR33953.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922487|gb|EDR39664.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990970|gb|EDR43271.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204545|gb|EDR49025.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961571|gb|EDR57592.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167057836|gb|EDR67582.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752475|gb|ACA69993.1| Polyribonucleotide nucleotidyltransferase [Yersinia
pseudotuberculosis YPIII]
gi|229687198|gb|EEO79273.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695508|gb|EEO85555.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700409|gb|EEO88441.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Pestoides A]
gi|262367183|gb|ACY63740.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis D182038]
gi|270337646|gb|EFA48423.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis KIM D27]
gi|294355649|gb|ADE65990.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Z176003]
gi|320016696|gb|ADW00268.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342853788|gb|AEL72341.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis A1122]
gi|391422727|gb|EIQ85279.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-03]
gi|391438598|gb|EIQ99331.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-05]
gi|391502538|gb|EIR56825.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-16]
gi|391507393|gb|EIR61225.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-25]
gi|391582429|gb|EIS28187.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-56]
gi|391610824|gb|EIS53064.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-61]
gi|391611220|gb|EIS53418.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-63]
gi|391624055|gb|EIS64745.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-65]
gi|391649859|gb|EIS87207.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-88]
gi|391667088|gb|EIT02461.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-91]
gi|391676890|gb|EIT11251.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-92]
gi|391677296|gb|EIT11614.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-94]
gi|391707793|gb|EIT39107.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis PY-99]
gi|411173906|gb|EKS43943.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis INS]
Length = 705
Score = 547 bits (1410), Expect = e-152, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 432/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSEE ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWQAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L V +R R++ G
Sbjct: 297 L-------------------------------------------ASVEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQDVPVKVMEVDRQGRIRLS 688
>gi|293393150|ref|ZP_06637465.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
gi|291424296|gb|EFE97510.1| polyribonucleotide nucleotidyltransferase [Serratia odorifera DSM
4582]
Length = 706
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 308/743 (41%), Positives = 428/743 (57%), Gaps = 58/743 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P S I RVG + D++++NPTT E+++S+LDL++AG++
Sbjct: 124 VNPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTE 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G + + + + +LV GKPK L+
Sbjct: 184 GAVLMVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPKWDWQAPAVNETLH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A L I K R + +++E V+ L L
Sbjct: 244 ARVAELAEGRLGDAYHITEKQQRYAQVDAIKEDVIAAL--------------------LA 283
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
+DE D GE+ + + V +R R++ G
Sbjct: 284 QDESLDA-----GEIQD------------------------ILGSVEKNVVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGE-KT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DFPYT+RV S ITE
Sbjct: 374 DSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 FAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 666 LQMGQEVPVKVLEVDRQGRVRLS 688
>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase [Staphylococcus haemolyticus JCSC1435]
gi|117940134|sp|Q4L5X7.1|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
haemolyticus JCSC1435]
Length = 700
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/748 (41%), Positives = 451/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +E G + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIEIGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V K+++NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G D E+K LV E+ H++
Sbjct: 188 MVEAGASEITEKEMLEAIFFGHD-------EIKRLVAF-------------QEEVVAHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E V V + + + R K L+ L+E VLT + +DE + + E +
Sbjct: 228 PVK-KEFVPVERDEALVSRVKTLTEEKGLKETVLTFDKQQ----RDENLDTLKAEIATEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ D + E+++D +V + ++ + +RR I +
Sbjct: 283 VDEADPENELLID-------------------------EVYAILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEQE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P +FPYT+R+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTTEFPYTVRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQPRK 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + IM +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 551 ELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAIDQDMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II ++T VG +Y N ++K I YG FVE+ G++ L HIS++S + K ED
Sbjct: 610 NRAREIIEDITREAEVGQVY-NAKVKRIEKYGAFVELFAGKDALLHISQISKERINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+ +GD +DVK+ E++ +G++ S +AL
Sbjct: 669 VLSIGDSIDVKITEIDKQGRVNASHKAL 696
>gi|21672636|ref|NP_660703.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25090941|sp|Q8K9H5.1|PNP_BUCAP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21623270|gb|AAM67914.1| polyribonucleotide nucleotidyltransferase [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 707
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 301/745 (40%), Positives = 440/745 (59%), Gaps = 60/745 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G I +ETG M RQA+ AV + +T ++ +V + FFPL VN
Sbjct: 3 NPIVRKFQYGQHTITLETGIMARQATAAVMASMDDTAVFVTVVGEKTTNSSQKFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER A GR GGFF+REGR ++E+L RLIDRP+RP KGF +E QI++ V+S +
Sbjct: 63 YQERTYAVGRIPGGFFRREGRPSENEILTARLIDRPIRPLFPKGFCNEIQIIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +++ A A++LS +P I RVG V +++++NPT +M+ S LDL+++G+
Sbjct: 123 QINPDIISIIGASAALSLSGIPFYGPIGAARVGFVNNQYVLNPTIDDMKSSFLDLVVSGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E LSE+ ++ A+ G + + N +++L K + + EL
Sbjct: 183 QNAVLMVEAESKVLSEDKILGAIMFGHQQQQVVINNIRSLSNEASKLPWIISYPEINTEL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTIL-SENGYVSKDETVGIVETIPD 386
+ ++A +++ I NK R + L+ L+E+++ + SEN + D
Sbjct: 243 ELKITKLAEKDISNAYLIFNKQERYEKLNFLKEEIIKLFFSENSNI-------------D 289
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+ E ED +F+++ +R+RI+
Sbjct: 290 ISEIED-------------------------------------IFEKIEKNIVRKRILNN 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D IR + R G+LPR HGS+LFTRGETQSL +TLG + AQ +D L D
Sbjct: 313 ENRIDGREKDMIRALDIRTGVLPRTHGSSLFTRGETQSLVSVTLGTSRDAQNLDELLGD- 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F Y+FPP SVGE+G +G+P RREIGHG LA+R+L V+P +DFPYTIR+ S I
Sbjct: 372 KTDNFLFHYNFPPYSVGEIGIVGSPKRREIGHGRLAKRSLLAVMPKLDDFPYTIRIVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK ++AG++MG+V + D++ ++LSDI G E
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGDKY------VLLSDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKV+G E+GITA QMDIK+ GIT +M+ AL +AK R HIL M + P
Sbjct: 486 DHLGDMDFKVSGTEEGITALQMDIKIEGITNEIMRIALNKAKSARLHILNVMKQALSKPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
N +S+ AP IH +K+ PEKI +IG GG ++ + EETG I+ EDDGT+KI+A
Sbjct: 546 NEISEFAPRIHKIKINPEKIKDVIGKGGSVIRMLTEETGT-IIEIEDDGTIKISATIGEK 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ + I +T VG IY + ++ I +G F+ I G+EGL HIS++S+ + K
Sbjct: 605 AKNAIRRIEEITAEIEVGRIY-SGKVTRIVDFGAFISIGIGKEGLVHISQISNKRVEKVS 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLS 831
D + V ++ VK++E++ +G+LRLS
Sbjct: 664 DHLTVDQIISVKVLEIDRQGRLRLS 688
>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
Length = 713
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/753 (41%), Positives = 449/753 (59%), Gaps = 57/753 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEVLNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L + Y + + +
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEV------------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE V G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 285 EEAVAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG DG+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGHVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE--ADAENPP 845
V VK+I+ ++KG++RLS +ALL E A A+ PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAAQADTPP 711
>gi|150388828|ref|YP_001318877.1| polynucleotide phosphorylase/polyadenylase [Alkaliphilus
metalliredigens QYMF]
gi|187470924|sp|A6TM00.1|PNP1_ALKMQ RecName: Full=Polyribonucleotide nucleotidyltransferase 1; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1
gi|149948690|gb|ABR47218.1| Polyribonucleotide nucleotidyltransferase [Alkaliphilus
metalliredigens QYMF]
Length = 702
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/754 (40%), Positives = 442/754 (58%), Gaps = 59/754 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ G R +VE G + A G+ + G+T + + C + P E DFFPL+ +Y+E
Sbjct: 4 TFEMELGGRPFVVELGKVAELAQGSCMIKYGDTFVLVTACASKEPKEGLDFFPLSCDYEE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ A G+ GGF KRE R + L RLIDRP+RP KG++++ Q+++ VLS D
Sbjct: 64 KLYAVGKIPGGFIKRESRPSEKATLTARLIDRPIRPLFPKGYHNDVQVIATVLSVDQDCP 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD A+ + IA+++S +P A V VG++ ++IVNPT+++ E S+L+L+++G+ DA
Sbjct: 124 PDISAMIGSSIALSVSNIPFMGPTASVSVGMIDGEYIVNPTSEQKELSELELIVSGTKDA 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++MIE + L+E ++ A+ + +++I ++ +V GKPK +K EL
Sbjct: 184 VMMIEAGANELTEAQILDAIMFAHEEIKKIVTFIEHIVSEVGKPKSEVIVKETDSELLAE 243
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V +L ++ +K R + + ++ + L D E+
Sbjct: 244 VVSFLDTKLANAIKTVDKTERNENIKAISAEAL----------------------DYFEE 281
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ E +S++ +L ++ V+ R+ I G R
Sbjct: 282 KYEG------------------RSKEVNTILSKQIKVET----------RKMITSEGIRP 313
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
D R D IRPISS G+LPR HG+ LFTRGETQ L V TLGD + AQRID L +DE KR
Sbjct: 314 DNRKLDEIRPISSEVGILPRTHGTGLFTRGETQVLTVTTLGDLRDAQRIDGLGEEDE-KR 372
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGE + PSRREIGHG L ERAL+P++P DFPY IR+ S + N
Sbjct: 373 YMHHYNFPPYSVGETRFMRGPSRREIGHGALVERALKPMIPCKEDFPYAIRLVSEVLACN 432
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSS ASVCG L+L DAGVPIK +AG+AMG++ + +G ILSDI G EDA G
Sbjct: 433 GSSSQASVCGSTLSLMDAGVPIKGMVAGIAMGLIKE------EGQIAILSDIQGMEDALG 486
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMD KVAG E+GITA QMDIK+ GI +M+ AL QAK GR HIL +M + P LS
Sbjct: 487 DMDLKVAGTENGITALQMDIKIAGIDRNIMETALAQAKIGRTHILNKMKEAITSPRTELS 546
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + +KV P+K+ +IG+GGK + II+ETGV+ I+ E+DGT+ I A D S +
Sbjct: 547 AYAPQVTKLKVHPDKVREVIGAGGKVINKIIDETGVK-INIENDGTIYIAAPDQESARVA 605
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+I + P VG++Y IK I +G FVEI PG+EGL HIS L+ +AK DV+
Sbjct: 606 LEMIELIVKDPVVGEVYTGKVIK-IMDFGAFVEILPGKEGLVHISNLAHERVAKVADVLA 664
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
GDL++VKL+E+N +G++ LSR+ALLP+ + E P
Sbjct: 665 EGDLIEVKLMEINPQGKIGLSRKALLPKPEKEAP 698
>gi|429462611|ref|YP_007184074.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|429338125|gb|AFZ82548.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
Length = 685
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/735 (42%), Positives = 435/735 (59%), Gaps = 54/735 (7%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
+++ETG + RQ+SGAV + G+T+I +V + E FFPL V+Y E+ A G+ G
Sbjct: 1 MVLETGEIARQSSGAVLASMGDTVILATVVGSQEIKEGQKFFPLTVDYIEKTYAVGKIPG 60
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
GFFKREG++ + E+L RLIDRPLRP K FY+E QI+ VLS D PD +++ +
Sbjct: 61 GFFKREGKSSEKEILTARLIDRPLRPLFPKQFYNEVQIIIHVLSVDPEIDPDIISIIGSS 120
Query: 221 IAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDF 280
A+ALS +P + I +RVG + + F++NPT ++E S LDL+LAGS DA+LM+E
Sbjct: 121 AALALSGIPFNGPIGAIRVGFIENDFVINPTKSQLEKSSLDLVLAGSSDAVLMVESTARE 180
Query: 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELV 340
LSE +++A+ G ++ + + + LV+ GKP+ K L + E + E+LV
Sbjct: 181 LSESTMLEAIDFGHQQMQVVIDNIIELVKEAGKPEWDWKPKPCDQFLVDIINEFSNEKLV 240
Query: 341 KVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVD 400
IK K R L + ++ + + VG + IP +D
Sbjct: 241 SAYNIKEKQDRSLVLREIRLEIKNFVKDR--------VGNSDVIP-------------LD 279
Query: 401 GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRP 460
+D+ ++F + SK +R RI+ G R DGR +RP
Sbjct: 280 STIDD-----------------------IIFN-LESKIVRNRILSGEPRIDGRNTRTVRP 315
Query: 461 ISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520
I R G+LPRAHGSALFTRGETQ+L ++TLG KQ Q ID+L + +F Y+ PP
Sbjct: 316 IDIRLGVLPRAHGSALFTRGETQALVIVTLGTKQDEQIIDSLLGEYR-DKFIFHYNMPPF 374
Query: 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCG 580
+ GE+GRIG P RRE+GHG LA RAL P+LP DF YT R+ S ITESNGSSSMASVCG
Sbjct: 375 ATGEIGRIGIPKRREVGHGYLARRALTPMLPDPKDFHYTTRLVSEITESNGSSSMASVCG 434
Query: 581 GCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 640
G LA+ DAGVPI +AGVAMG++L+ D+F IL+DI G ED GDMDFKVAG
Sbjct: 435 GSLAMMDAGVPISKHVAGVAMGLILEDDKFA------ILTDILGDEDHLGDMDFKVAGTS 488
Query: 641 DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMK 700
DGITA QMDIK+ GIT +M AL QA++GR IL +M K LS ++P I +K
Sbjct: 489 DGITALQMDIKIQGITKDIMGIALLQAQEGRLSILEKMKKAINISREELSSYSPKIITIK 548
Query: 701 VKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMV 760
+ P+KI +IG GG +++I EET + ID +DG V + D ++++ + I LT
Sbjct: 549 INPDKIRDVIGKGGATIRAITEETATQ-IDISEDGVVSVAGVDNNNVQNAYKKILELTAD 607
Query: 761 PTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLI 820
VG +Y +I I +G V++ PG++GL HISE+S+N + DV+ +G + VK+I
Sbjct: 608 VEVGSVYEG-KILRILDFGAIVQLFPGKDGLLHISEISNNRIQNISDVLSIGQRIKVKVI 666
Query: 821 EVNDKGQLRLSRRAL 835
E +DKG+ RLS +A+
Sbjct: 667 ESDDKGRFRLSAKAV 681
>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
phytofirmans PsJN]
gi|226702630|sp|B2T2E3.1|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
phytofirmans PsJN]
Length = 718
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/759 (41%), Positives = 445/759 (58%), Gaps = 55/759 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ V G + ++ + + LV GKP+ L V E+A
Sbjct: 193 SEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNEPLIARVTELA 252
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+L+ Q+++K R L + Y + T L ED
Sbjct: 253 QADLLAAYQLRDKQARSAKLKEV------------YAA---------TSKKLEEDAAAGG 291
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
V D K+T V V ++ +K +R +I+ G R DGR
Sbjct: 292 TVAAD---------------KAT--------VGNVLFDIEAKIVRTQILNGEPRIDGRDT 328
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPR HGSALFTRGETQ++ V TLG K Q ID LE + +RF L Y
Sbjct: 329 RTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYR-ERFMLHY 387
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSSM
Sbjct: 388 NMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNGSSSM 447
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDFK
Sbjct: 448 ASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDFK 501
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL++M + LS +AP
Sbjct: 502 VAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILSKMTSAVSGANTVLSDYAPR 561
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 562 MITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRIE 620
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K G V
Sbjct: 621 NITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKDGQQV 679
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
VK+I+ ++KG++RLS +ALL E N P G+PT
Sbjct: 680 KVKVIQTDEKGRVRLSAKALLNE--GANGASGAPQGEPT 716
>gi|375106904|ref|ZP_09753165.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium JOSHI_001]
gi|374667635|gb|EHR72420.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium JOSHI_001]
Length = 768
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 308/767 (40%), Positives = 434/767 (56%), Gaps = 64/767 (8%)
Query: 85 SFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPL 144
S V+ +G + +ETG + RQ+SGAV V +T++ +V DFFPL
Sbjct: 2 SMFNKVTKTFQWGQHSVTLETGEIARQSSGAVVVHMEDTVVLATVVAKSEAKAGQDFFPL 61
Query: 145 NVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLS 204
V+Y E+ AAG+ G FFKREGR + E L RLIDRP+RP +GF++E Q++ VLS
Sbjct: 62 TVDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLS 121
Query: 205 YDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLL 264
+ D A+ A+A+S +P + I RVG V ++++NP ++ DS++DL++
Sbjct: 122 LNPEVQADIAALIGTSAALAISGIPFNGPIGAARVGYVNGEYVLNPGKTQLADSKMDLVV 181
Query: 265 AGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP 324
AG++ A+LM+E LSEE+++ AV G D + N + LV GKP+
Sbjct: 182 AGTEAAVLMVESEAQMLSEEIMLGAVVYGHDQGKIAINAINELVRDAGKPEWQWQAPAKN 241
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
V +A L QI++K R +A + VL L G
Sbjct: 242 EPFIAKVNALADGPLRAAYQIRSKQARTQACRDVTSNVLAALKAEG-------------- 287
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+ F +V+V+ + E+ S+ +R +I+
Sbjct: 288 -----------------------------------IEFDKVEVEGLLFEIESRIVRGQIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR +RPI R G+LPR HGSALFTRGETQ++ V TLG + AQRID L
Sbjct: 313 AGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAVVVATLGTDRDAQRIDALAG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ E +RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS DFPY+IRV S
Sbjct: 373 EFE-ERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAALPSKEDFPYSIRVVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGGCL+L DAGVP+K +AG+AMG++ D + F +L+DI G
Sbjct: 432 EITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFA------VLTDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QAK+ R HIL +M
Sbjct: 486 DEDHLGDMDFKVAGTTGGITALQMDIKIQGITKEIMQVALAQAKEARLHILGKMQDAVGG 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+S+ AP ++ MK+ PEKI +IG GG ++++ EETG ID +DGT+ I + D
Sbjct: 546 AKTEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGC-TIDIGEDGTITIASTDA 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
E +K I+ +T +G +Y + I +G + I PG++GL HIS+++ + K
Sbjct: 605 DKAEFAKKRITEITAEAEIGKVYEG-PVTKILDFGALINILPGKDGLLHISQIAHQRVEK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL------PEADAENPP 845
ED +K G +V VK++E ++KG+++LS +ALL E +E PP
Sbjct: 664 VEDFLKEGQVVKVKVLETDEKGRIKLSMKALLERPEGMEEERSERPP 710
>gi|374622806|ref|ZP_09695327.1| polynucleotide phosphorylase/polyadenylase [Ectothiorhodospira sp.
PHS-1]
gi|373941928|gb|EHQ52473.1| polynucleotide phosphorylase/polyadenylase [Ectothiorhodospira sp.
PHS-1]
Length = 696
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/746 (41%), Positives = 434/746 (58%), Gaps = 57/746 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
+S +G + +ETG + RQASGAV V T++ + DFFPL VNYQ
Sbjct: 4 ISKSFQYGQHTVTLETGEIARQASGAVMVNVAGTVVLVTAVGRKEAVPGRDFFPLTVNYQ 63
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER AAGR GGFFKREGR + E L RLIDRPLRP KGF +E Q+++ V+S +
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFTNEVQVVATVMSLNPEV 123
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A AVALS +P + I RVG V ++++NP ++++S LDL++AG+ +
Sbjct: 124 DPDIPALLGASAAVALSGLPFAGPIGAARVGYVDGQYVLNPDLSQLKESALDLVVAGTAN 183
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E LSEE+++ AV G + ++ ++ L GKP +L
Sbjct: 184 AVIMVESEAAMLSEEVMLGAVIYGHEQMQVAIQAIQELAAEAGKPAWSWQPAQDNTDLRT 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E +L Q+ K R + ++ + E V+ L+
Sbjct: 244 RVAEACHADLTAAYQVAEKQERTQRIAEVREAVVARLA---------------------- 281
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
DGE + +P+ +VK +F ++ + +R RI++G R
Sbjct: 282 ----------DGE-------------EGSPLAE---EVKEIFHDLEKRIVRDRILDGQPR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI R G+LPR HGSALFTRGETQ++ TLG + +Q ID +E + +
Sbjct: 316 IDGRDTRTVRPIDVRVGVLPRTHGSALFTRGETQAIVTATLGTDRDSQIIDAIEGERR-E 374
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+FPP GE G +G+P RREIGHG LA+R ++ V+P++ DFPY +RV S ITES
Sbjct: 375 RFMLHYNFPPYCTGETGMVGSPKRREIGHGRLAKRGVQGVMPAEGDFPYVLRVVSEITES 434
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG LAL DAGVP+K +AGVAMG++ D D F +L+DI G ED
Sbjct: 435 NGSSSMASVCGTSLALMDAGVPLKAPVAGVAMGLIKDGDRFA------VLTDILGDEDHL 488
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E+G+TA QMDIK+ GIT +M+ AL QA++GR HIL+EM K P +
Sbjct: 489 GDMDFKVAGTEEGVTALQMDIKIDGITRDIMETALAQAREGRLHILSEMNKVISTPRVEM 548
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP +++ PEKI +IG GG ++++ EETG ID +D G VKI + D + E+
Sbjct: 549 SAYAPRFITIRINPEKIRDVIGKGGATIRALTEETGA-TIDIDDSGVVKIASVDKEAGEE 607
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ I +T VG IY + I +G FV I PGR+GL HIS++S + + V
Sbjct: 608 ARRRIEEITADVEVGRIYEG-RVAKIMDFGAFVTILPGRDGLVHISQISEERVESVSERV 666
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
K G+ V VK++EV+ +G++RLS +A+
Sbjct: 667 KEGETVKVKVLEVDKQGRIRLSMKAV 692
>gi|16800436|ref|NP_470704.1| polynucleotide phosphorylase/polyadenylase [Listeria innocua
Clip11262]
gi|423100411|ref|ZP_17088118.1| polyribonucleotide nucleotidyltransferase [Listeria innocua ATCC
33091]
gi|81526977|sp|Q92C23.1|PNP_LISIN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16413841|emb|CAC96599.1| polynucleotide phosphorylase (PNPase) [Listeria innocua Clip11262]
gi|370793412|gb|EHN61250.1| polyribonucleotide nucleotidyltransferase [Listeria innocua ATCC
33091]
Length = 723
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 308/750 (41%), Positives = 443/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L ++ E +G V I +++E ++
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE--- 306
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+RR I + R DGR
Sbjct: 307 -------------------------------------------MRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISEPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKALLEKKEQPEGD 704
>gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
Length = 698
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 452/754 (59%), Gaps = 62/754 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R +++ETG + +QA+ AVTV G+T++ +C +EP D FFPL VNY+
Sbjct: 4 VEMLLGGRTLVLETGRLAKQANAAVTVRYGDTVV---LCTVTASAEPKDLDFFPLTVNYE 60
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER A G+ GGF KREGR + +L RL DRP+RP +GF ++ Q+ + V+S D
Sbjct: 61 ERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVANIVMSVDQNC 120
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S+VP + I GV VG V +FI+NPT ++ ++++ + +AG+ D
Sbjct: 121 TPEIAAMIGTSAALSISDVPFNGPIGGVNVGRVNGQFIINPTVEQEAETEIFVTVAGTKD 180
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E + ++E+++++A+ G D +++I ++ L GKPKM + E+
Sbjct: 181 AIMMVEAEGNEVAEDVMLEAIMFGHDEIKKIVAMIEELQAAAGKPKMEVKLHAVNAEVNA 240
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V A ++LV+ ++I K R+ A+ ++ NG +T+
Sbjct: 241 AVRAFASDKLVEAIRIPEKHARQDAIDAV----------NG-----------DTVAHF-- 277
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
EEV + TP L + DVK V ++ + +RR I R
Sbjct: 278 -----EEVYAE-----------------TPELLA--DVKEVLYDIVKEEVRRLITHDKVR 313
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + IRPI LLPR HGS LFTRG+TQ+L++ TLG Q +D + S +E K
Sbjct: 314 PDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGI-SPEETK 372
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + P RREIGHG L ERAL V+PS+ +FPYTIR+ S + ES
Sbjct: 373 RFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPSETEFPYTIRLVSEVLES 432
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AG+AMG++ D D F ILSDI G ED
Sbjct: 433 NGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFS------ILSDIQGMEDHL 486
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG G+TA QMDIK+ GI ++ +AL+QA+ GR HIL +M +SL
Sbjct: 487 GDMDFKVAGTAQGVTAIQMDIKINGIDRAILSQALEQARIGRMHILGKMTAVMSQSRSSL 546
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S++AP I +++ P+KI +IGSGGK + IIEETGV+ ID E DG V I + + +K
Sbjct: 547 SQYAPKILTLRINPDKIRDVIGSGGKIINKIIEETGVK-IDIEQDGMVFIASSNEEMNQK 605
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+KAII + +G++Y +K I +G FVEI P ++GL HIS+LS+ +AK EDVV
Sbjct: 606 AKAIIEGIVKEVVIGEVYLGT-VKRIEKFGAFVEILPNKDGLVHISQLSTERVAKVEDVV 664
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL-PEADAE 842
+GD + VK+ E++ +G++ LSR+A+L P+ A+
Sbjct: 665 AIGDQITVKVTEIDQQGRINLSRKAVLTPQVPAQ 698
>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
Length = 700
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/755 (40%), Positives = 454/755 (60%), Gaps = 61/755 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V++ R + +ETG M + A GAV + G+T++ + + + DF PL VNY E
Sbjct: 4 AVEVEIAGRTMRLETGRMAKLADGAVLASYGDTMVLATAVSSKILKPDVDFLPLTVNYLE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ +AG+ GG+FKREG + E L RLIDRP+RP + KGF +ETQ+++ VLS D
Sbjct: 64 KAYSAGKIPGGYFKREGAPSEKETLTSRLIDRPIRPLIPKGFSYETQVIASVLSVDQSMT 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
+ + +TAA A+A+S++P +AGV++G V +F+VNP QE+++S+L+L++AG++DA
Sbjct: 124 SEVVGITAASAALAISDIPFGGPLAGVKIGRVNGQFVVNPNMQELQNSELELVVAGTEDA 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I M+E + LSE + + A+ + +++I ++ L M G+ K + ++ EL +
Sbjct: 184 IQMVESGANGLSESVFLDALALAHSEIKKIVAKIVELQAMVGRTKRVVPVEPVGEELERQ 243
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V E+ + + + I NK R++ I+ D L +
Sbjct: 244 VRELVAGPIREAVLIANKNDRQERFDQ----------------------IMADAVDKLGE 281
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
ED +SR+ VK V+ +V +R I+E R+
Sbjct: 282 ED------------------PARSRQ----------VKEVYHDVEYHEVREMILEKKVRA 313
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR A IRPI+ +LPR HGSALFTRGETQSLAV+TLG QRID LE + +
Sbjct: 314 DGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGE-YFRN 372
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE + +P RRE+GHG LAERAL+ VLP FPYTIR+ S I ESN
Sbjct: 373 FMLHYNFPPFSVGEARPLRSPGRREVGHGKLAERALKSVLPDKEAFPYTIRIVSDILESN 432
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGG LA+ DAGVPIK +AG+AMG++ D D LILSDI G ED G
Sbjct: 433 GSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGDRV------LILSDILGLEDHLG 486
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKV G ++GITA QMDIK+ GIT+ +M++AL+QA+ GR HIL +M + P +SL+
Sbjct: 487 DMDFKVTGTQEGITALQMDIKIEGITIDLMRQALEQARAGRIHILEKMQESLSSPRDSLA 546
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
HAP I+ +++K +KI +IG GGK ++ II E GV+ ++ +D G V I + D +S +++
Sbjct: 547 PHAPRIYTLQIKTDKIRDVIGPGGKVIRGIIAECGVK-VNVDDSGLVTIASVDEASAQQA 605
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+++ LT VG IY ++ I +G FVEI P +GL HIS+L+ + + D +
Sbjct: 606 IDMVNRLTEEAIVGKIYMGT-VRKIVDFGAFVEILPNVDGLVHISQLAEHRVQSVADELA 664
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
G+ V VK++E++ +G++RLSR+ L E +E PP
Sbjct: 665 EGEQVLVKVLEIDRQGKIRLSRKEALLE--SEQPP 697
>gi|317493630|ref|ZP_07952051.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918573|gb|EFV39911.1| polyribonucleotide nucleotidyltransferase [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 704
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/744 (41%), Positives = 438/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV VT +T ++ +V A E FFPL VN
Sbjct: 3 NPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPIRPLFPEGFLNEVQVVATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E LSE+ ++ AV G + + + +KAL GKP+ T L
Sbjct: 183 EGAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIENIKALAAEAGKPRWEWTAPAVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V +A + I K R + ++ V+ L ++DE++
Sbjct: 243 HARVAALAEARIGDAYHITEKQARYAQIDQIKADVIAALQ-----AEDESLNA------- 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
GE+ + V + +R R++ G
Sbjct: 291 -------------GEIAD------------------------VLGSLEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L + ++
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDGL-TGEQ 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P ++FPYT+RV S IT
Sbjct: 373 TDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ PEKI +IG GG ++++ +ETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTVKIAATDNEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|398384359|ref|ZP_10542391.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. AP49]
gi|397722831|gb|EJK83363.1| polyribonucleotide nucleotidyltransferase [Sphingobium sp. AP49]
Length = 770
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/751 (40%), Positives = 438/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I G + + +ETG + RQA AV T GET++ +V A E DFFPL V+YQE+
Sbjct: 7 VSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ VLS+DG P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSFDGDSEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I RVG ++ +NP+ E++ +LDL++A + +A+
Sbjct: 127 DIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATGNAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSE++++ AV +A +++++ + L E K L +
Sbjct: 187 MMVESEAKELSEDVMLGAVLFAHEASKKVADAIIQLAEKAAKDPWEIAKGDDLGALKTKL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G ++ ++ +K R AL+ K + +G
Sbjct: 247 KDLIGGDIAAAYKLTDKSARSNALNEARAKAKASFAADGL-------------------- 286
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D + V+ G +KL K++ ++ +R I++ G R D
Sbjct: 287 --DAQTVMAG-------------------------IKLT-KKLEAEIVRTAILKDGARID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + + F
Sbjct: 319 GRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLHYENF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ ++FPYTIRV S ITESNG
Sbjct: 378 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKDEFPYTIRVLSDITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F ++SDI G ED GD
Sbjct: 438 SSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGSDFA------VISDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E+GIT QMDIKV GIT + + AL+QAK+GR HIL EM K LS
Sbjct: 492 MDFKVAGTENGITTMQMDIKVAGITQEIFETALRQAKEGRAHILGEMNKALSSTRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D+ +E +K
Sbjct: 552 HAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGVIKISSSDIDQIEAAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG +Y ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 611 KWILGIVEEAEVGKVY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVVSE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E E
Sbjct: 670 GQEVKVKVLEIDPRGKVRLSMRVVDQETGEE 700
>gi|189424733|ref|YP_001951910.1| polynucleotide phosphorylase/polyadenylase [Geobacter lovleyi SZ]
gi|257096692|sp|B3EAF2.1|PNP_GEOLS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189420992|gb|ACD95390.1| Polyribonucleotide nucleotidyltransferase [Geobacter lovleyi SZ]
Length = 703
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/749 (40%), Positives = 442/749 (59%), Gaps = 59/749 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+ G+ + + TG M +QASGAV ++ G+T++ +V DFFPL VNY E+
Sbjct: 8 VEAQVGNMNVKISTGKMAKQASGAVVISSGDTMVLVTVVGTKEAKPGQDFFPLTVNYTEK 67
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ G FFKREGR + E L+CRLIDRP+RP + + +TQ+++ V+S + H P
Sbjct: 68 TYAGGKIPGSFFKREGRPSEDETLICRLIDRPIRPLFPESYLCDTQVMATVISAEEDHDP 127
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
L++ A A+ +S++P IAGV+VG V K I NP+ ++++ S L++++A DAI
Sbjct: 128 AILSMIGASAALMISDIPFEGPIAGVKVGRVDGKLIANPSAEQLKLSDLEIVVAAGKDAI 187
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
M+EG DF+SEE L++AV +DAV+ I + L G K + L V
Sbjct: 188 FMVEGEADFVSEEDLLEAVFFAKDAVQGILAAQEELARQVGVAKREVAPLVVDEALKAKV 247
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+ +A + + + +IK K R A++ ++E+V+ L+E E E
Sbjct: 248 KALAFDRIAQAFKIKAKQERYAAVAQIKEEVVAALAE--------------------EFE 287
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D+E+ K ++ +R ++E G R D
Sbjct: 288 GRDKEI------------------------------KGFIGDIEYDRMRHDVLETGIRID 317
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI+ GLLPRAHGS LFTRGETQ LA TLG Q QR+D+L + K+F
Sbjct: 318 GRDTKTVRPIAIEAGLLPRAHGSTLFTRGETQVLAAATLGTSQDEQRMDSLYGEYR-KKF 376
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE AP RREIGHG LAERA+ +LP+ +DFPYTIR+ + ESNG
Sbjct: 377 MLHYNFPPFSVGETSFRLAPGRREIGHGMLAERAISAILPNHDDFPYTIRIVAETLESNG 436
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGGCL+L DAGVP+K +AG+AMG++ + ++ IL+DI G ED GD
Sbjct: 437 SSSMATVCGGCLSLMDAGVPVKAPVAGIAMGLIKEGEKVA------ILTDILGDEDHLGD 490
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+ DG+TA QMDIK+GG++ +M++AL+QAK+GR HIL +M +C P +S
Sbjct: 491 MDFKVAGSADGVTALQMDIKIGGVSKEIMQQALKQAKEGRLHILGKMAQCLAAPREEMSA 550
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEA-IDTEDDGTVKITAKDLSSLEKS 750
AP I + +KP++I +IG+GGK ++SI E TGV ID+++ G + I + D ++ + +
Sbjct: 551 FAPRITTIWIKPDRIRDVIGTGGKTIRSITEATGVMIDIDSDNSGKINIASSDKAACDAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+I LT G +Y +K I +G FVE+ PG +GL HISEL + D++
Sbjct: 611 IQMIRGLTDEVEEGKLYMGT-VKKIMEFGAFVEVLPGTDGLVHISELDETRVKNVTDILN 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEA 839
GD V VK I V+ +G+++LSR+A L ++
Sbjct: 670 EGDKVLVKCIGVDKQGKIKLSRKAALGQS 698
>gi|336065731|ref|YP_004560589.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|334295677|dbj|BAK31548.1| polyribonucleotide nucleotidyltransferase [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 712
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/746 (40%), Positives = 447/746 (59%), Gaps = 52/746 (6%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ F + + VETG + +QA G+V V +T++ S A ++ DFFPL V Y+E+
Sbjct: 7 ELDFCGKNLKVETGELAKQAGGSVLVRYEDTVVL-SAATASKKAKDIDFFPLTVTYEEKL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+ G+ GGF +REGR +H L RLIDR +RP +GF +E Q+++ VLS D PD
Sbjct: 66 YSVGKIPGGFLRREGRPSEHATLTSRLIDRTIRPLFAEGFRNEVQVVNTVLSVDQDSAPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A +++ +S++P IAGV VG + + F++NPT +E S++ L++AG+ DAI
Sbjct: 126 MAAMFGASLSLMVSDIPFEGPIAGVTVGYIDETFVINPTLEEQAKSKMHLIVAGTKDAIN 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SEE++++A+ G + ++ + + + K KM T+ P E+ + VE
Sbjct: 186 MVEAGAEEVSEELMLEAMLFGHEWIKRLCAFQIEIAQEVAKEKMEVTLYEVPSEIVEEVE 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
+ G++L + + I K+ R + LEEK + Y ++ E
Sbjct: 246 ALVGKDLREAVAIHEKLKRYGMIDELEEKAVLHFEAKSYETESE---------------- 289
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+ T EV +V EV RR I R DG
Sbjct: 290 ----------------------KHKTVKYVKEVTHGMVADEV-----RRLISIEKIRPDG 322
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RP++ + LL R HGS LFTRGETQ L+V TLG Q ID+L SD + KRF
Sbjct: 323 RGVDEVRPLNVQIDLLSRVHGSGLFTRGETQVLSVCTLGAMADTQIIDDL-SDVDSKRFL 381
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR+GAP RREIGHG L ERAL V+PS+ +FPYTIR+ + + ESNGS
Sbjct: 382 HHYNFPPYSVGETGRMGAPGRREIGHGALGERALSYVIPSEEEFPYTIRLVAEVLESNGS 441
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SS AS+C G LAL AGVP+K +++G+AMG+V ++G D T IL+DI G ED GDM
Sbjct: 442 SSQASICAGSLALMAAGVPVKAAVSGIAMGLV----QYGDDYT--ILTDIQGMEDHFGDM 495
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA QMDIK+ G++ ++++AL QAK GR ++A M + P N + ++
Sbjct: 496 DFKVAGTKKGITALQMDIKIKGLSEDILREALAQAKTGRAEMMAAMDEVISEPRNFVGEY 555
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I M +KP+KI +IG+GGK + IIE+ ID EDDG V I D +S++K+KA
Sbjct: 556 APKIAQMNIKPDKIRDVIGAGGKIINQIIEDCNDVKIDIEDDGRVVIYHTDQASIDKAKA 615
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
+I N+ V VG+IY + ++ I +G FV + G + L H+S++ N + K ED+VK+G
Sbjct: 616 MIENIVRVAAVGEIY-DAKVVRIEKFGAFVNLFQGTDALLHVSKMDHNRVEKPEDIVKLG 674
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPE 838
D+V VK++E+++KG++ +SR+ALLP+
Sbjct: 675 DIVKVKVMEIDEKGRVNVSRKALLPK 700
>gi|108808983|ref|YP_652899.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Antiqua]
gi|108780896|gb|ABG14954.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis Antiqua]
Length = 731
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 432/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 30 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 89
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 90 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 149
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 150 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 209
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSEE ++ AV G + + + + ALV GKPK D P E L
Sbjct: 210 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWQAEPVNEAL 268
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 269 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 322
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L V +R R++ G
Sbjct: 323 L-------------------------------------------ASVEKNVVRSRVLRGE 339
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 340 PRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 398
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 399 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEIT 458
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 459 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 512
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 513 HLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 572
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 573 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 631
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 632 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 690
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 691 YLQMGQDVPVKVMEVDRQGRIRLS 714
>gi|374293408|ref|YP_005040443.1| polynucleotide phosphorylase [Azospirillum lipoferum 4B]
gi|357425347|emb|CBS88234.1| Polynucleotide phosphorylase [Azospirillum lipoferum 4B]
Length = 703
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/743 (41%), Positives = 433/743 (58%), Gaps = 60/743 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R++++ETG + RQA+GAV VT G+T + + A P DFFPL VNYQE+
Sbjct: 8 EIEWGGRKLVLETGKIARQANGAVMVTYGDTTVLCTAVAAKAPKPGVDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + E LV RLIDRP+RP GF +ETQ++ VLS+D + PD
Sbjct: 68 FAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVVCTVLSHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A A+ +S +P I RVG ++++NPT E+EDS LDL++AG+ + +L
Sbjct: 128 IVAMVGASAALTISGIPFLGPIGAARVGYKNGQYVLNPTMDEVEDSDLDLVVAGTTEGVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E L+EE+++ AV G + + + L E K + LP P +
Sbjct: 188 MVESEAKELTEEVMLGAVMFGHTNFQPVIEMIIDLAEEAAK----EPWDLPEPAYDRKA- 242
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
+K ++ R S +E ++ ++ Y E VG
Sbjct: 243 ------------LKARL-RETVGSDVEAAYTEMVKQSRY----EKVGAA----------- 274
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
K K+ ++ F + FKE+ + LR +++ GRR DG
Sbjct: 275 ------------------KAKALETLAEEFDAQSIGFEFKELEADILRGAVLKTGRRIDG 316
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPI S G+LPRAHGSALFTRGETQ+L V TLG Q Q ID LE + + F
Sbjct: 317 RDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQDEQIIDALEGEYR-EHFM 375
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP DFPYT+RV S +TESNGS
Sbjct: 376 LHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKEDFPYTLRVVSEVTESNGS 435
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCG L+L DAG P+ +AG+AMG++ + F +LSDI G ED GDM
Sbjct: 436 SSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFA------VLSDILGDEDHLGDM 489
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E G+TA QMDIK+ IT +MK AL QAKDGR HIL EM K ++++
Sbjct: 490 DFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMSKALTGAREGVNEN 549
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I ++ + EKI +IGSGGK ++ I+E+TG + ID +DDGTVK++A D + +
Sbjct: 550 APRITVINIPKEKIRDVIGSGGKVIREIVEQTGAK-IDIDDDGTVKVSAVDQKKSDAAIE 608
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I + P +G +Y +K + +G FV R+GL HISEL+ + K DVV G
Sbjct: 609 WIKGIVAEPEMGVVYTGKVVK-VVDFGAFVNFLGSRDGLVHISELAQQRVGKVSDVVSQG 667
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
D V VK+I +D+G+++LS + +
Sbjct: 668 DSVKVKVIGFDDRGKVKLSMKQV 690
>gi|22124608|ref|NP_668031.1| polynucleotide phosphorylase [Yersinia pestis KIM10+]
gi|45440447|ref|NP_991986.1| polynucleotide phosphorylase [Yersinia pestis biovar Microtus str.
91001]
gi|167399496|ref|ZP_02305020.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|21957412|gb|AAM84282.1|AE013671_9 polynucleotide phosphorylase [Yersinia pestis KIM10+]
gi|45435304|gb|AAS60863.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Microtus str. 91001]
gi|167052000|gb|EDR63408.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis biovar
Antiqua str. UG05-0454]
Length = 737
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 432/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 36 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 95
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 96 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 155
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 156 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 215
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSEE ++ AV G + + + + ALV GKPK D P E L
Sbjct: 216 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWQAEPVNEAL 274
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 275 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 328
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L V +R R++ G
Sbjct: 329 L-------------------------------------------ASVEKNVVRSRVLRGE 345
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 346 PRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 404
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 405 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEIT 464
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 465 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 518
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 519 HLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 578
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 579 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 637
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 638 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 696
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 697 YLQMGQDVPVKVMEVDRQGRIRLS 720
>gi|417957807|ref|ZP_12600726.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri ATCC
51223]
gi|343967871|gb|EGV36111.1| polyribonucleotide nucleotidyltransferase [Neisseria weaveri ATCC
51223]
Length = 726
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/757 (41%), Positives = 446/757 (58%), Gaps = 68/757 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 28 YGEHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTANKDVKEGQDFFPLTVDYLERTYAA 87
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 88 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 147
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V + +++NPT ++ SQ+DL++AG+ A+LM+E
Sbjct: 148 MIGASAALVLSGVPFAGPIGAARVGYVNNVYVLNPTKAQLAKSQMDLVVAGTQKAVLMVE 207
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----LYKHV 331
L E +++ AV G + ++ + N + + P++ D P E L + +
Sbjct: 208 SEAQELPEHVMLGAVVYGHEQMQAVINAINEFADEV-NPEVWD---WKPAETDSALVEKI 263
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
IAGE + + +I+ K R L DE V+ D L E
Sbjct: 264 RAIAGETIGEAFKIRQKQARSAKL-------------------DEAWNAVK---DALITE 301
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ D + +K +FK++ + +R +I++G R D
Sbjct: 302 ETD--------------------------TLTANQIKGIFKQLEADVVRGQILDGQPRID 335
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI+ + G+LPR HGSALFTRGETQ+LAV TLG ++ Q ID L S + RF
Sbjct: 336 GRDTRTVRPINIQTGVLPRTHGSALFTRGETQALAVATLGTQRDEQIIDAL-SGEYTDRF 394
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLPS +F YT+RV S ITESNG
Sbjct: 395 MLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSEITESNG 454
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GD
Sbjct: 455 SSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILENNKFA------VLTDILGDEDHLGD 508
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GIT +M+ AL+QAK+ R HILA+M + P LS+
Sbjct: 509 MDFKVAGTTEGVTALQMDIKIQGITKEIMQIALEQAKEARLHILAQMKEAVDGP-QELSQ 567
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 568 HAPRLFTMKINQDKIRDVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAK 626
Query: 752 AIISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++
Sbjct: 627 RRIEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVKNVSDYLQ 686
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL--PEADAENPP 845
VG V VK +EV+D+G++RLS +ALL PE + P
Sbjct: 687 VGQNVKVKALEVDDRGRVRLSMKALLEAPEREQRAEP 723
>gi|30021896|ref|NP_833527.1| polynucleotide phosphorylase [Bacillus cereus ATCC 14579]
gi|81433861|sp|Q819Z1.1|PNP_BACCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29897452|gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
14579]
Length = 712
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/754 (41%), Positives = 453/754 (60%), Gaps = 59/754 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG + ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGAIGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIY-EAKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
++ VK+IE++ +G++ LSR+ LL E + E VK
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLLKE-EQEKEAVK 704
>gi|433500549|ref|ZP_20457535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM174]
gi|432235840|gb|ELK91449.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM174]
Length = 706
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 439/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T+++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRR 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKRLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|357419561|ref|YP_004932553.1| polyribonucleotide nucleotidyltransferase [Thermovirga lienii DSM
17291]
gi|355397027|gb|AER66456.1| polyribonucleotide nucleotidyltransferase [Thermovirga lienii DSM
17291]
Length = 745
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/747 (40%), Positives = 444/747 (59%), Gaps = 65/747 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ G + ETG + +QA+G+VTV+ GET++ + C ++ E DFFPL V+Y+ERF
Sbjct: 7 VEVGGEVMTFETGTLAKQANGSVTVSMGETVLLVTACFSEEAREGIDFFPLLVDYEERFY 66
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
+AG+ GGF KREGR + +L RL DR +R + ++ +++ LS D + P
Sbjct: 67 SAGKIPGGFIKREGRPSETAILAARLTDRSIRSLFPEHMRNDVHVVATTLSVDQENSPSV 126
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
LA+ A A+ +S++P + VR+G + + +VNPT M +S LDL+++G D I M
Sbjct: 127 LAINGASAALTISDIPWEGPVGAVRIGYIDGQLVVNPTESLMRNSSLDLVVSGHRDGITM 186
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E + +SE++L++A+ + Q+ +++I + ++E GK K+ L P + + +++
Sbjct: 187 VEAGANEVSEDLLVEALALAQEEIKKIVDLQLEMMEKIGKEKVQIPEPLEFPGIDRWIKD 246
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
EE+ + I K PR KAL +E K + L E PD
Sbjct: 247 NLYEEIKTAVMIHEKKPRAKALDEIERKAIEALMEEH--------------PD------- 285
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E +K ++ K +R IV G+R+DGR
Sbjct: 286 -----------------------------KEGYIKEYIGKLIKKAVRELIVFEGKRADGR 316
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG----DKQMAQRIDNLESDDEVK 509
D IRPIS + G+LPR HGSA+FTRGETQ+L TLG D Q+ +D L+ D+ K
Sbjct: 317 RTDEIRPISCKVGVLPRTHGSAIFTRGETQALVTTTLGMVGEDDQL---VDGLQHDETSK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+FPP SVGEV + P RREIGHG LAERA+ P+LP + FPY IRV S I ES
Sbjct: 374 RFMLHYNFPPYSVGEVRPMRGPGRREIGHGALAERAVRPLLPDEALFPYAIRVVSDILES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCG L+L DAGVPIK ++AGVAMG++ + D+ ++L+DI G ED
Sbjct: 434 NGSSSMASVCGASLSLMDAGVPIKKAVAGVAMGLIKEGDKV------VVLTDIQGLEDHF 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +DG+TA QMD K GGIT ++ +AL+QAK GR IL +M + P L
Sbjct: 488 GDMDFKVAGTKDGVTALQMDNKAGGITKEILTQALEQAKQGRLFILDKMEEAIREPREEL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP I+ +KV EKI IIG GGK ++SI+ ETGV+ ID ED+GTV I + + S +K
Sbjct: 548 SSLAPRIYTLKVNQEKIRDIIGPGGKTIRSIVAETGVK-IDVEDNGTVLIASSNRESAQK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ +II L GD+Y ++ + P+G FVE+ PG+EGL H+SE+S++ +AK +D++
Sbjct: 607 AISIIEELVKEVEAGDVYLG-KVTRLMPFGAFVEVLPGKEGLLHVSEVSTHHVAKVDDIL 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K GD+V V + E++D G++ LSR+ +
Sbjct: 666 KPGDMVLVVVKEIDDMGRINLSRKRIF 692
>gi|402817503|ref|ZP_10867091.1| polyribonucleotide nucleotidyltransferase Pnp [Paenibacillus alvei
DSM 29]
gi|402505025|gb|EJW15552.1| polyribonucleotide nucleotidyltransferase Pnp [Paenibacillus alvei
DSM 29]
Length = 734
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 305/783 (38%), Positives = 454/783 (57%), Gaps = 65/783 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
+++ G R +++ETG + +QA+ AV V G+T++ +V + P + DFFPL VNY+ER
Sbjct: 4 IEMELGGRTLILETGRLAKQANAAVKVEYGDTVVLCTVTASKEPKD-LDFFPLTVNYEER 62
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGF KREGR + +L RLIDRP+RP +GF ++ QI+ V+S D P
Sbjct: 63 LYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNDVQIVDLVMSVDQDCPP 122
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ A+ +S+VP + I GV VG + +FI+NPT ++ E S + L++AG+ DAI
Sbjct: 123 EIAAMIGTSAALTVSDVPFNGPIGGVIVGRIDGQFIINPTVEQEEKSDIHLVVAGTKDAI 182
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E + + E ++++A+ G + +++I +++ + G KM + ++ V
Sbjct: 183 MMVEAEANEVPESVMLEAIMFGHEEIKKIVAKIEEFAAIAGTSKMEVKLHAVDTDVNAAV 242
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
A E LV+ ++I K R+ A+ ++ ++ + E YV E +
Sbjct: 243 RAFAQERLVEAIRIPEKHARQDAIDAINQEAVAHF-EQLYVETPENMS------------ 289
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
DV ++ + +RR I R D
Sbjct: 290 ----------------------------------DVNETLYDIVKEEVRRLITHDKVRPD 315
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + IRPI GLLPR HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 316 GRQLEEIRPIDCDTGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GLEESKRF 374
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP SVGE + AP RREIGHG L ERAL V+P +++FPYTIR+ S + ESNG
Sbjct: 375 MHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESEFPYTIRLVSEVLESNG 434
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AG+AMG++ D + F ILSDI G ED GD
Sbjct: 435 STSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGEHFS------ILSDIQGMEDHLGD 488
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI ++ +AL QA+ GR HIL +M + P SLS+
Sbjct: 489 MDFKVAGTAEGVTAIQMDIKIDGIDRSILTQALDQARAGRMHILGKMNEVIQTPRESLSQ 548
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG+GGK V IIEETGV+ ID E DG + I + + S E+++
Sbjct: 549 YAPKILTMHINPDKIRDVIGAGGKVVNKIIEETGVK-IDIEQDGRIFIASTNAESNERAR 607
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
II + VG++Y +K + +G FVE+ PG+EGL HIS+LS+ +AK EDVV +
Sbjct: 608 EIIEGIVKEVVVGEVYTGT-VKRVEKFGAFVEVLPGKEGLVHISQLSTERVAKVEDVVNI 666
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLVGSPKPKG 871
GD ++VK++E++ +G++ LSR+ LL A E G + +AA +++ S P+G
Sbjct: 667 GDKIEVKVVEIDQQGRINLSRKVLLEPAQTE--------GSASSEAAGTERPRSSRPPQG 718
Query: 872 SSS 874
+
Sbjct: 719 GGN 721
>gi|421539937|ref|ZP_15986090.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93004]
gi|402320221|gb|EJU55712.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93004]
Length = 706
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|149909276|ref|ZP_01897932.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
gi|149807593|gb|EDM67541.1| polyribonucleotide nucleotidyltransferase [Moritella sp. PE36]
Length = 705
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 315/759 (41%), Positives = 446/759 (58%), Gaps = 60/759 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G + +ETG + RQA+ AV + G+T + SV DFFPL VN
Sbjct: 2 NPIVKSFKYGQHTVTLETGVIARQATAAVMASIGDTSVLVSVVGKKQAEAGRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L CRLIDRP+RP GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSEGETLTCRLIDRPIRPLFPAGFKNEVQVVATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+++S +P + I R+G D++I+NP+T E+ +SQLDL++AG+
Sbjct: 122 EIQPDLVALIGVSAALSISGMPFNGPIGAARIGFQNDEYILNPSTSELAESQLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++A+LM+E + LSEE ++ AV G + ++ + +K PK T + EL
Sbjct: 182 ENAVLMVESEAEILSEEQMLGAVMYGHEQMQVVIEAIKEFAAEVNTPKWDWTAPVVNTEL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ E+A +L + QI+ K R + ++ V+ L E
Sbjct: 242 KAKIAELASGDLAEAYQIQEKTERYAKVGGIKSAVIAKLQE------------------- 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E+ E+ +R++ +L S + +R RI++G
Sbjct: 283 -----ENAEL---------------NTREAGELLAS----------LEKNIVRNRILDGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR + IR +S G+LPR HGSALFTRGETQ+L TLG ++ AQRID+L + +
Sbjct: 313 PRIDGRDPEMIRALSVMTGVLPRTHGSALFTRGETQALVTATLGTERDAQRIDSL-TGET 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ RF + Y+FPP VGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S IT
Sbjct: 372 IDRFLMHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNADEFPYTVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+VLD D +ILSDI G ED
Sbjct: 432 ESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVLDGDR------SVILSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ GITA QMDIK+ GIT +M+KAL QAK R HIL+ M + +
Sbjct: 486 HLGDMDFKVAGSSAGITALQMDIKIEGITKDIMQKALVQAKAARLHILSVMDQAIATNRD 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ +KI IIG GG ++++ EETG I+ EDDGTVKI A
Sbjct: 546 DVSEFAPRIHTIKISTDKIKDIIGKGGATIRALTEETGT-TIEIEDDGTVKIAATSNEQA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I LT VG IY ++ +A +G FV I PG++GL HIS+++ + K D
Sbjct: 605 QAAIERIHQLTAEVEVGQIYEGKVVR-LADFGAFVNILPGKDGLVHISQITQERVNKVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL--PEADAENP 844
+ V +V VK++EV+ +G++RLS + + P A AE P
Sbjct: 664 HLSVEQVVKVKVLEVDRQGRIRLSIKEAMDAPAAPAEQP 702
>gi|415886620|ref|ZP_11548400.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
MGA3]
gi|387587307|gb|EIJ79630.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
MGA3]
Length = 704
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/743 (41%), Positives = 445/743 (59%), Gaps = 58/743 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ R++ VE G + +QA+GAV V G+T++ ++ + P DFFPL VNY+ER A
Sbjct: 12 WAGRKLTVEIGQLAKQANGAVLVRYGDTVVLSTATASKEPKN-VDFFPLTVNYEERLYAV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP +GF +E Q++S V+S D + A
Sbjct: 71 GKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSSEMAA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+++S++P IAGV VG VG +FI+NP Q+ME S + L++AG+ +AI M+E
Sbjct: 131 MFGSSLALSISDIPFEGPIAGVTVGRVGGEFIINPGVQQMEQSDMHLVVAGTKEAINMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
D + EE++++A+ G + ++ + + +V GK KM + EL V E+
Sbjct: 191 AGADEVPEEVMLEAIMFGHEEIKRLIEFQEKIVAEIGKEKMEVVLFELDKELEAEVREMC 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+++K +Q+ K+ R A++ ++ +VL E ++ DED
Sbjct: 251 EADMIKAIQVPEKLAREDAINEVKNEVLAKYEE--------------------QEADED- 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ VK + + +RR I E R DGR
Sbjct: 290 ---------------------------TLKQVKQILDNIVKDEVRRLITEEKIRPDGRKV 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D IRP+SS G+LPR HGS LFTRG+TQ+L+V TLG Q +D L ++E KRF Y
Sbjct: 323 DEIRPLSSEIGILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLGIEEE-KRFMHHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYT+R+ S + ESNGS+S
Sbjct: 382 NFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKEFPYTVRLVSEVLESNGSTSQ 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+C LA+ DAGVPIK +AG+AMG+V D + IL+DI G ED GDMDFK
Sbjct: 442 ASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNY------TILTDIQGMEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG G+TA QMDIK+ G++ ++++ALQQAK GR IL MLK P LSK+AP
Sbjct: 496 VAGTPKGVTALQMDIKIAGLSREILEEALQQAKKGRMQILDSMLKTISKPREHLSKYAPK 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I M + PEKI +IG GK++ IIEETGV+ ID E DGT+ I++ D +K+KAII
Sbjct: 556 ILTMTINPEKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSIDEEMNQKAKAIIE 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG +Y ++K I +G FVEI G++GL HISEL+ + + K EDVV +GD +
Sbjct: 615 DIVREVEVGQLYLG-KVKRIEKFGAFVEIFNGKDGLVHISELAEDRVGKVEDVVSIGDEI 673
Query: 816 DVKLIEVNDKGQLRLSRRALLPE 838
VK+ E++ +G++ LSR+A+L E
Sbjct: 674 LVKVTEIDKQGRVNLSRKAVLKE 696
>gi|375086947|ref|ZP_09733339.1| polyribonucleotide nucleotidyltransferase [Megamonas funiformis YIT
11815]
gi|374563662|gb|EHR34973.1| polyribonucleotide nucleotidyltransferase [Megamonas funiformis YIT
11815]
Length = 689
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 440/743 (59%), Gaps = 63/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G R +VETG M +QA+GAV V GET++ + + P E DFFPL V+Y+E+ A
Sbjct: 8 LGGRSFVVETGKMAKQANGAVLVRYGETVVLVTATASAEPREGVDFFPLTVDYEEKMYAV 67
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP +G+ ++ QI++ VLS + + P+
Sbjct: 68 GKIPGGFIKREGRPAESAILNSRLIDRPIRPLFPEGYRNDVQIVATVLSVEQDNAPEIAG 127
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S++P IAGVRVG + +F++NPT ++ E S L+L +AGS DA++M+E
Sbjct: 128 MIGASCALSISDIPFLGPIAGVRVGRIDGEFVINPTVEQREKSDLNLTVAGSYDAVMMVE 187
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+ LSEE+++ A+ G + ++ + + ++E CGK K + P EL + E
Sbjct: 188 AGANELSEEVVLDAILFGHEEIKRLVKFQQEMMEKCGKEKHQPKLFTVPEELVNAIHEYT 247
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ +K+ R
Sbjct: 248 YDKFDAAVRDADKLRR-------------------------------------------- 263
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKL--VFKEVTSKFLRRRIVEGGRRSDGR 453
DE +K ++++ L+ E+D+++ V + +R I R DGR
Sbjct: 264 --------DEHVAEVKAEAKEHFLELYPEMDMEIDYVLYKTLKGIVRHMITHEKIRPDGR 315
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+ +RPIS G+LPR HGSALFTRG+TQ L V TLG Q ID + DD KR+
Sbjct: 316 GLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQVIDGI-GDDTSKRYIH 374
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + +P RREIGHG LAERAL PV+PS +FPYT+R+ S + ESNGSS
Sbjct: 375 HYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSVEEFPYTLRLVSEVLESNGSS 434
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SM SVCG L+L AGVPIK ++G AMG+V D D + IL+DI G EDA GDMD
Sbjct: 435 SMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDAY------TILTDIQGMEDALGDMD 488
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG DGITA QMDIKV G++ ++ AL QAK GR IL++ML+C P+ LS +A
Sbjct: 489 FKVAGTPDGITAIQMDIKVDGLSREILAAALAQAKRGREFILSKMLECISEPNKELSPYA 548
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P ++ MK+ +KI +IG GGK +K II+ETGV+ ID DDG V ITA S +K++ +
Sbjct: 549 PRVNSMKIPTDKIRDVIGPGGKTIKKIIDETGVQ-IDIHDDGNVFITAVGAESAQKAQDM 607
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I+ LT VG +Y+ ++ I +G FVEI PG+EGLCHIS+L+ + K EDVV +GD
Sbjct: 608 INALTAEVEVGAVYKG-KVTRIMNFGAFVEILPGKEGLCHISQLAKERVGKVEDVVNIGD 666
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++VK+ E++ +G++ LS + LL
Sbjct: 667 ELEVKVTEIDRQGRVNLSHKVLL 689
>gi|451823216|ref|YP_007459490.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776016|gb|AGF47057.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 699
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/740 (41%), Positives = 437/740 (59%), Gaps = 54/740 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G +++ETG + RQASGAV + G+T++ +V FFPL V+Y E+ +A
Sbjct: 11 YGLHDVVLETGEIARQASGAVLASMGDTVVLATVVGNKETKSGQGFFPLTVDYIEKTYSA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREG++ + E+L RLIDRPLRP +GFY+E QI+ VLS D PD ++
Sbjct: 71 GRIPGGFFKREGKSSEKEILTSRLIDRPLRPLFPEGFYNEVQIVVHVLSVDPEIDPDIIS 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + A+A+S +P I +RVG + ++FIVNPT ++ S LDL+LAG+ DA+LM+E
Sbjct: 131 MIGSSAALAISGIPFKGPIGAIRVGYLEEEFIVNPTKNQLSHSDLDLVLAGTSDAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSE ++++A+ G D ++ + + + LV+ GKP+ L + +
Sbjct: 191 STAKELSESLMLEAIAFGHDQMQVVVDNICELVKEAGKPEWDWEPNCHDSNLVNLISDNY 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E+ IK K R L ++ ++ + E+
Sbjct: 251 YSEISSAYNIKEKQKRSTKLKEIKIRIKEFVCSKVI---------------------ENN 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E++ D +D+ ++F + SK +R +I+ G R DGR
Sbjct: 290 EIISDCVLDD-----------------------IIFN-IESKVVRGKILSGEPRIDGRNT 325
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPIS R G+LPRAHGSALFTRGETQ+L V+TLG K Q ID+L S + +F Y
Sbjct: 326 RTVRPISIRLGVLPRAHGSALFTRGETQALVVVTLGTKHDEQIIDSL-SGEYRDKFIFHY 384
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GEVGRIG P RREIGHG LA R+L P+LP DF YT+R+ S ITESNGSSSM
Sbjct: 385 NMPPFATGEVGRIGVPKRREIGHGYLARRSLTPMLPDSKDFQYTMRLVSEITESNGSSSM 444
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGG LA+ DAGVPI +AGVAMG++L+ D+F IL+DI G ED GDMDFK
Sbjct: 445 ASVCGGSLAMMDAGVPIGKHVAGVAMGLILEDDKFS------ILTDILGDEDHLGDMDFK 498
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG DGITA QMDIK+ GIT +M AL QAK+GR +IL +M +S ++P
Sbjct: 499 VAGTVDGITALQMDIKIQGITKDIMDVALSQAKEGRLYILDKMQNSIDSSRLEMSSYSPK 558
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ P+KI +IG GG ++SI EET + ID +DGTV I+ D ++++++ +
Sbjct: 559 MLTLKINPDKIRDVIGKGGATIRSITEETATQ-IDISEDGTVVISGVDKDNVQEAQRKVV 617
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
LT VG +Y +I I +G V++ PGR+GL HISE+SS + DV+ +G +
Sbjct: 618 ELTTDVEVGGVYEG-KILRILDFGAIVQLFPGRDGLLHISEISSTRIQNINDVLSIGQKI 676
Query: 816 DVKLIEVNDKGQLRLSRRAL 835
VK+IE +DKG+LRLS + L
Sbjct: 677 KVKVIESDDKGRLRLSAKVL 696
>gi|421537710|ref|ZP_15983893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93003]
gi|402318377|gb|EJU53900.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
93003]
Length = 706
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|238760238|ref|ZP_04621383.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
gi|238701561|gb|EEP94133.1| hypothetical protein yaldo0001_39430 [Yersinia aldovae ATCC 35236]
Length = 706
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 433/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 AAVLMVESEAQILSEDQMLGAVVFGHEQQQIVIENINALVAQAGKPKW-DWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V +L +++DET+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTAVL-----LAQDETL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+ G++H + +V +R R++ G
Sbjct: 289 ----------------NAGEIHD-------------------ILGDVEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTIRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKKDDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY + ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIY-DGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVKVKVMEVDRQGRIRLS 688
>gi|227327831|ref|ZP_03831855.1| polynucleotide phosphorylase/polyadenylase [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 706
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/748 (41%), Positives = 436/748 (58%), Gaps = 66/748 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT E+++S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E + LSE+ ++ AV G + + + + ALV GKPK PE
Sbjct: 183 EGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINALVAEAGKPKW----DWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R + ++ V+ L ++DET
Sbjct: 239 NVSLEQRVQALSEARLGDAYRITEKQERYAQVDVIKADVVAALQ-----AEDET------ 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ D++ + V +R R+
Sbjct: 288 --------------------------------------LNAGDIQEILGNVEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M +
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLS 831
K D +++G V VK++EV+ +G++RLS
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|350545157|ref|ZP_08914662.1| Polyribonucleotide nucleotidyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527048|emb|CCD38988.1| Polyribonucleotide nucleotidyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
Length = 733
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/752 (41%), Positives = 441/752 (58%), Gaps = 56/752 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 31 WGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTNKPGQDFFPLTVDYLEKTYAA 90
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ +VLS + D A
Sbjct: 91 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIYVLSLNPDIPADIPA 150
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 151 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLVVAGTERAVLMVE 210
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
L EE+++ AV G + ++ + + LV GKP+ D P E L V EI
Sbjct: 211 SEAQQLFEEVMLGAVVFGHEQMQTAIDAIHELVHDGGKPEW-DWQPAPKNEVLIARVTEI 269
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL Q++N+ R L + Y + +
Sbjct: 270 AKPELEAAYQLRNEQARSTKLKEV------------YAATSAKLA--------------- 302
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE V G V P + +LF ++ +K +R +I+ G R DGR
Sbjct: 303 EEAVASGTV-------APDAATVGNVLF----------DIEAKIVRTQILNGEPRIDGRD 345
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 346 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQSIDALEGEYR-ERFMLH 404
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ P + GE GR+G+P RREIGHG LA+RAL LPS +F Y+IRV S ITESNGSSS
Sbjct: 405 YNMPSFATGETGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITESNGSSS 464
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 465 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 518
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS-LSKHA 693
KVAG G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + P +N+ LS +A
Sbjct: 519 KVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAAVPHTNTELSDYA 578
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K
Sbjct: 579 PRMITIKINPEKIRAVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSAEGMAEAKKR 637
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I N+T VG +Y +K + +G V I PG++GL HISE + + D +K G
Sbjct: 638 IENITAEVEVGQVYEGPVLK-LLDFGAIVNILPGKDGLLHISEFVNERVKDINDYLKEGQ 696
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
+V VK+I+ ++KG++RLS +ALL E + P
Sbjct: 697 IVKVKVIQTDEKGRVRLSAKALLNEGAQQAEP 728
>gi|294056196|ref|YP_003549854.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
akajimensis DSM 45221]
gi|293615529|gb|ADE55684.1| polyribonucleotide nucleotidyltransferase [Coraliomargarita
akajimensis DSM 45221]
Length = 724
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/740 (41%), Positives = 431/740 (58%), Gaps = 50/740 (6%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
I + TG + ASGAVT+ GET ++ S A DFFPL V+Y+E+FSA G+ G
Sbjct: 14 IEISTGTLAGLASGAVTIRQGETELFVSATAASALRPGQDFFPLTVDYREKFSAGGKFPG 73
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
G+FKREG+ + E+L RL DRPLRP KGF +E Q++ +L+ D H PD L V AA
Sbjct: 74 GYFKREGKPSEKEILTSRLCDRPLRPLFPKGFMNEVQVIGLLLATDQTHEPDVLMVNAAS 133
Query: 221 IAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDF 280
A +S++P + + VRVG + +F+ NPT EM DS LDL+ GS+ ++MIEG +F
Sbjct: 134 AATLISDIPWNGPVGCVRVGQIDGEFVTNPTHDEMLDSDLDLIYVGSETEMMMIEGSAEF 193
Query: 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELV 340
+S+E +A++ GQ A++ I K L ++ GK K + L P ++ + E A E++
Sbjct: 194 ISDERFYEALEYGQQAIQPIIAAQKELAKLAGKEKKEFPLVLTPADVTEFCEAHAAEKVK 253
Query: 341 KVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVD 400
+ L + R+ A+ + ++KD T + E L D VD
Sbjct: 254 EALGHDSYTERKLAIEA--------------IAKDTTAALEEK---LGADN-------VD 289
Query: 401 GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRP 460
G DV F E+ K R+ I+E GRR DGR A +R
Sbjct: 290 GN-----------------------DVARAFDEIQEKLYRQNILETGRRVDGRGAKDLRA 326
Query: 461 ISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520
IS G+LPR HGSA+F RGETQ+L + TLG + Q ID L K F L Y+FPP
Sbjct: 327 ISCDTGVLPRVHGSAVFNRGETQALVISTLGTSRDVQDIDGLTGGATSKSFILHYNFPPF 386
Query: 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCG 580
S GE GR G RREIGHG LAER+L P+LP +++FPY IRV S + SNGS+SMAS+CG
Sbjct: 387 STGEAGRFGFTGRREIGHGALAERSLLPILPPEDEFPYAIRVVSEVMSSNGSTSMASICG 446
Query: 581 GCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 640
GCL+L DAGVPI AG++ G+V + D G +IL+DI G+ED GDMDFK+AG
Sbjct: 447 GCLSLMDAGVPITAPCAGISTGLVTEKDADGKITKHVILTDILGAEDHFGDMDFKIAGTP 506
Query: 641 DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMK 700
+GIT FQ+D+K+ G+ + +A++Q +D R I+A M + P L +HAP IH +K
Sbjct: 507 EGITGFQLDLKIQGLPFDITLEAIKQNRDARMKIIAIMAEHLPESRQDLREHAPRIHTIK 566
Query: 701 VKPEKINLIIGSGGKKVKSIIEETGVEA-IDTEDDGTVKITAKDLSSLEKSKAIISNLTM 759
+ PEKI +IG GGK ++ I E +G + ID ++ G V + A D S++++ + T
Sbjct: 567 IDPEKIGALIGPGGKNIRRITEVSGAQIDIDEDNSGRVLVFATDKESMDRAIQEVELCTA 626
Query: 760 VPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKL 819
VG YR ++ I +G FVE PG+EGL HISEL+ + K ED+ K+GD + VK
Sbjct: 627 EIEVGKTYRGI-VRGIKDFGAFVECLPGKEGLVHISELADFRVNKTEDICKLGDEMVVKC 685
Query: 820 IEVNDKGQLRLSRRALLPEA 839
I + +KG++RLSR+A L +A
Sbjct: 686 IGM-EKGKVRLSRKAALEDA 704
>gi|403378756|ref|ZP_10920813.1| hypothetical protein PJC66_02890 [Paenibacillus sp. JC66]
Length = 694
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/747 (40%), Positives = 441/747 (59%), Gaps = 61/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
+ + G R +++ETG + +QA+GAV G+T + +C SEP D FFPL VNY+
Sbjct: 5 IHMELGGRPLVLETGRLAKQANGAVMARYGDTAV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER + G+ GG+ KREGR +L RL DRP+RP +GF ++ QI++ V+S +
Sbjct: 62 ERLYSVGKIPGGYPKREGRPTQKAILASRLTDRPIRPLFPEGFRNDVQIMNIVMSVEQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD +A+ A+++S+VP + I GV VG V +F++NPT ++ E ++L +++AG+ D
Sbjct: 122 SPDIVAMIGTSAALSISDVPFNGPIGGVIVGRVDGEFVINPTVEQSEKTELFVVVAGTKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E + EE++++A+ G + +++I +++ E GKPKM + E+
Sbjct: 182 AVMMVEAEAHEVPEEVMLEAIMFGHEEIKKIVDKIAEFAEENGKPKMEVVLHEVNQEVNA 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V A E L++ ++I+ K R+ A+ ++ E+ + + + E P+ L
Sbjct: 242 AVRAYASERLIEAVRIEEKHARQDAIDAINEEAI-----------EHFTTVYEETPEYL- 289
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
DV+ V ++ + +RR I R
Sbjct: 290 -----------------------------------ADVREVLYDIVKEEVRRLITHDKMR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRPI GLLPR HGSALFTRG+TQ L+ TLG Q +D L+ E K
Sbjct: 315 PDGRKLDEIRPIECDTGLLPRTHGSALFTRGQTQVLSSCTLGALGDVQLLDGLDLQ-ETK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + AP RREIGHG L ERALE V+P + FPY IR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALEMVIPDEQQFPYAIRLVSEVLES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSS AS+C +AL DAGVPIK +AG+AMG++ D D+F IL+DI G ED
Sbjct: 434 NGSSSQASICASTMALMDAGVPIKAPVAGIAMGLIKDGDQFS------ILTDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG + G+TA QMDIK+ GI ++++AL QAK+GR IL +ML P L
Sbjct: 488 GDMDFKVAGTDKGVTAIQMDIKIAGINREILQEALNQAKEGRLFILNKMLSQIEKPRTEL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I +++ P+KI +IG+GGK + II+ETGV+ ID E DG V I + D + EK
Sbjct: 548 SPYAPKITTLQINPDKIRDVIGAGGKIINKIIDETGVK-IDIEQDGKVYIASSDAAMNEK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ II ++ VG+ Y +K + +G FVE+ PG+EGL HIS+LS+ +AK EDVV
Sbjct: 607 ARKIIEDIVREVEVGETYLGT-VKRVEKFGAFVEVLPGKEGLVHISQLSTERVAKVEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD + VK+ E++ +G++ LSR+A L
Sbjct: 666 SVGDSITVKVTEIDSQGRINLSRKATL 692
>gi|206579040|ref|YP_002236426.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
342]
gi|288933408|ref|YP_003437467.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|290511541|ref|ZP_06550910.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
gi|226702656|sp|B5XSX9.1|PNP_KLEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206568098|gb|ACI09874.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
342]
gi|288888137|gb|ADC56455.1| polyribonucleotide nucleotidyltransferase [Klebsiella variicola
At-22]
gi|289776534|gb|EFD84533.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp. 1_1_55]
Length = 711
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/757 (40%), Positives = 440/757 (58%), Gaps = 62/757 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G + + + + LV+ GKP+ + L
Sbjct: 183 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + ++ + + L V++DET+
Sbjct: 243 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATL-----VAEDETL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D +E E+ + +R R++ G
Sbjct: 289 --DANELGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ ++FPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIDEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 QHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + EA + P
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS----IKEATEQTP 697
>gi|416183846|ref|ZP_11612752.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13399]
gi|325133728|gb|EGC56384.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13399]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 434/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L V L I E L+ +E
Sbjct: 249 IAGETIKEAFKIRQKQARSAKLDEAWNAVKEAL-------------ITEETDTLVANE-- 293
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+K +FK + + +R +I++G R DGR
Sbjct: 294 ---------------------------------IKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|300025003|ref|YP_003757614.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526824|gb|ADJ25293.1| polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 733
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 324/759 (42%), Positives = 445/759 (58%), Gaps = 67/759 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R++ +ETGH RQA AV G+T + +V A DFFPL VNYQER
Sbjct: 7 VEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLTVNYQER 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E L RLIDRP+RP ++GF +ETQ++ VLS+D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L + AA A+ LS +P I G RVGLV + ++NP EM+DS LDL++AG+ DA+
Sbjct: 127 DILGMVAASAALTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSALDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK-H 330
+M+E L E +++AV G ++ + + L E K IK+P Y
Sbjct: 187 MMVESEAKELPEAQMLEAVVFGHKHMQPVIQAIITLAEKAAKEPW--DIKIPDKAKYAGE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V+++A + L + K K R+ ++ ++ + + GI +IP
Sbjct: 245 VKKLAEKTLKQAFSTKEKGKRQDLVAEAKKAI--------------SEGI--SIPA---- 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+D +E+V L S+ FK + +R +++ R
Sbjct: 285 DDPNEKV-----------------------LLSDA-----FKALEMDIMRGDVLKTKMRI 316
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID+LE + +R
Sbjct: 317 DGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK-ER 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR+G+P RREIGHG LA RA+ P+LPS DFPYT+RV S ITESN
Sbjct: 376 FLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQEDFPYTLRVVSEITESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+K +AG+AMG++ + DEF ++LSDI G ED G
Sbjct: 436 GSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDEF------VVLSDILGDEDHLG 489
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +G+T+ QMDIK+ GIT +M+ AL QA DGR HIL EM K L
Sbjct: 490 DMDFKVAGTANGVTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAKSLTGAREELG 549
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +K+ +KI +IGSGG ++ I+ E+G + ID EDDGTVKI + + S+EK+
Sbjct: 550 EFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAK-IDIEDDGTVKIASANRESIEKA 608
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
A I +T P VG IY+ +K + +G FV ++GL HIS+L+ VVK
Sbjct: 609 LARIRGITSEPEVGQIYKGKVVK-VMEFGAFVNFFGAKDGLVHISQLAPGRPESVGAVVK 667
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL-------LPEADAE 842
G V VKL+ +D+G+ RLS + + +P A+ E
Sbjct: 668 EGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEIPRAEGE 706
>gi|254251858|ref|ZP_04945176.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
AUO158]
gi|124894467|gb|EAY68347.1| Polyribonucleotide nucleotidyltransferase [Burkholderia dolosa
AUO158]
Length = 722
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/754 (41%), Positives = 448/754 (59%), Gaps = 58/754 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 21 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 80
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 81 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 140
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V D++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 141 LIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKASRLDLVVAGTERAVLMVE 200
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 201 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEW-DWQPAPKDEALIARVTEL 259
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L + Y + + +
Sbjct: 260 AQPELLAAYQIRDKQARSTKLKEV------------YTATSAKL---------------E 292
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE + G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 293 EEALAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILSGEPRIDGRD 335
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + RF L
Sbjct: 336 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-DRFMLH 394
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS +F Y+IRV S ITESNGSSS
Sbjct: 395 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITESNGSSS 454
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 455 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 508
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS+ AP
Sbjct: 509 KVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILRKMTEAVSGANTQLSEFAP 568
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 569 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 627
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 628 ENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 686
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADA---ENPP 845
V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 687 VKVKVIQTDEKGRVRLSAKALLNEAAAAQTDTPP 720
>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase [Burkholderia xenovorans LB400]
gi|122970578|sp|Q142H7.1|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
xenovorans LB400]
Length = 716
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/759 (41%), Positives = 445/759 (58%), Gaps = 58/759 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGARTAKPGQDFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ V G + ++ + + LV GKP+ L V E+A
Sbjct: 193 SEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNEPLIARVTELA 252
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+L+ Q+++K R L + Y + T L ED
Sbjct: 253 QADLLAAYQLRDKQARSAKLKEI------------YAA---------TSAKLEEDAAAGG 291
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
V D K+T V V ++ +K +R +I+ G R DGR
Sbjct: 292 TVAAD---------------KAT--------VGNVLFDIEAKIVRTQILNGEPRIDGRDT 328
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L Y
Sbjct: 329 RTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYR-ERFMLHY 387
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSSM
Sbjct: 388 NMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNGSSSM 447
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDFK
Sbjct: 448 ASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDFK 501
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS +AP
Sbjct: 502 VAGTEQGVTALQMDIKIQGITREIMQVALAQAKEGRLHILGKMTSAVSGANTVLSDYAPR 561
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 562 MITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRIE 620
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K G V
Sbjct: 621 NITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKDGQQV 679
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
VK+I+ ++KG++RLS +ALL DA N P G+PT
Sbjct: 680 KVKVIQTDEKGRVRLSAKALLN--DAANGA---PQGEPT 713
>gi|422111361|ref|ZP_16380985.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378199|emb|CBX23171.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALLTEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|385203227|ref|ZP_10030097.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
gi|385183118|gb|EIF32392.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
Length = 716
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/759 (41%), Positives = 445/759 (58%), Gaps = 58/759 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ AA
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSLNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + +++++NPT +M++S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ V G + ++ + + LV GKP+ L V E+A
Sbjct: 193 SEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWKPAAKNEPLIARVTELA 252
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+L+ Q+++K R L + Y + T L ED
Sbjct: 253 QADLLAAYQLRDKQARSAKLKEI------------YAA---------TSAKLEEDAAAGG 291
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
V D K+T V V ++ +K +R +I+ G R DGR
Sbjct: 292 TVAAD---------------KAT--------VGNVLFDIEAKIVRTQILNGEPRIDGRDT 328
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L Y
Sbjct: 329 RTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYR-ERFMLHY 387
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSSM
Sbjct: 388 NMPPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITESNGSSSM 447
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDFK
Sbjct: 448 ASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDFK 501
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS +AP
Sbjct: 502 VAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRLHILGKMTSAVSGANTVLSDYAPR 561
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 562 MITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRIE 620
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
N+T+ VG +Y +K + +G V I PG++GL HISE+++ + D +K G V
Sbjct: 621 NITLEVEVGQVYEGTVLK-LLDFGAIVNILPGKDGLLHISEIANERIKDINDYLKDGQQV 679
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
VK+I+ ++KG++RLS +ALL DA N P G+PT
Sbjct: 680 KVKVIQTDEKGRVRLSAKALLN--DAANGA---PQGEPT 713
>gi|420260773|ref|ZP_14763443.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|404511794|gb|EKA25659.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica WA-314]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 435/746 (58%), Gaps = 60/746 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPK-WDWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 HARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L ++D +R R++ G
Sbjct: 297 LGSVEKD-------------------------------------------VVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
+++G V VK+IEV+ +G++RLS +
Sbjct: 665 YLQMGQEVPVKVIEVDRQGRIRLSMK 690
>gi|433521584|ref|ZP_20478279.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
61103]
gi|432260357|gb|ELL15616.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
61103]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEVNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|313668762|ref|YP_004049046.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica
020-06]
gi|313006224|emb|CBN87686.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
lactamica 020-06]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALLTEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|99079919|ref|YP_612073.1| polynucleotide phosphorylase [Ruegeria sp. TM1040]
gi|123077834|sp|Q1GKK5.1|PNP_SILST RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|99036199|gb|ABF62811.1| polyribonucleotide nucleotidyltransferase [Ruegeria sp. TM1040]
Length = 711
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 319/758 (42%), Positives = 439/758 (57%), Gaps = 73/758 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQE++
Sbjct: 9 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S VP IAG RVG ++I+NPT +M+D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E L+EE ++ AV + ++ + + + +L E K + PP+
Sbjct: 189 KDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAK----EPFDFTPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ E++ I +K R A+ + +E E I
Sbjct: 245 SDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKE---------------------EII 283
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L E++ ED ++ K++ S LR +V
Sbjct: 284 ASLTEEQQEDG------------------------------NLGSALKKLESVVLRGDVV 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ GRR DGR D +R I + GLLPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 314 KNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NFK-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL+ DG+ IL+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLEE-----DGSYGILTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIKV GIT +MK AL QAK GR HIL EM K S
Sbjct: 488 DEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHILGEMAK-SLT 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
++ S+HAP I M+V +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 547 EASEFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASANG 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+++K+ +I + P G +Y +K I +G FV R+GL H+S++ + L
Sbjct: 606 EAIQKAYDMIHAIVAEPEEGAVYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DV+K G V VKL+ +D+G++RLS + + E E
Sbjct: 665 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEE 702
>gi|302878493|ref|YP_003847057.1| polyribonucleotide nucleotidyltransferase [Gallionella
capsiferriformans ES-2]
gi|302581282|gb|ADL55293.1| polyribonucleotide nucleotidyltransferase [Gallionella
capsiferriformans ES-2]
Length = 701
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 444/746 (59%), Gaps = 67/746 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I FG Q+ +ETG + RQASGAV V+ +T++ +V DFFPL V+YQE+
Sbjct: 8 IAFGKHQLTIETGEIARQASGAVLVSLDDTVVLVTVVGRKDAKPEQDFFPLTVDYQEKTY 67
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ G FFKREGR + E+L RLIDRPLRP + FY+E QI++ V+S D D
Sbjct: 68 AAGKIPGSFFKREGRASEKEILTSRLIDRPLRPLFPESFYNEVQIIATVMSSDSEIDSDI 127
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
++ A A+A+S +P IA RVG ++++NPT E+ SQ+DL++AG+D A+LM
Sbjct: 128 PSLIGASAALAISGIPFEGPIAAARVGYANGQYLLNPTKTELVTSQMDLVVAGTDRAVLM 187
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---LYKH 330
+E LSEE+++ AV G + + + N + + E GKP M D PP + L
Sbjct: 188 VESEAQQLSEEVMLGAVMFGHEQFQIVINAINEMAEAVGKP-MWDWT--PPAKNEALIAQ 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E+A EL I++K R A+S++ KVL +S PDL ++
Sbjct: 245 IAELAEAELQAAYAIRSKQERTDAISAIHSKVLASVS-----------------PDLEKN 287
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
V +F + +K +R +I+ G R
Sbjct: 288 A-----------------------------------VNELFGALEAKIVRGQILSGEPRI 312
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +R I+ R G+L R HGSALFTRGETQ++ V TLG + AQ++D L+ + R
Sbjct: 313 DGRDTRTVRQITIRNGVLARTHGSALFTRGETQAVVVATLGSMRDAQKVDALQGEF-TDR 371
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP + GE GR+G+P RREIGHG LA+RAL VLPS+ DF Y +R+ S ITESN
Sbjct: 372 FMLHYNFPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPSEEDFGYAVRIVSEITESN 431
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCL++ DAGVP+K +AG+AMG++ + + F +LSDI G ED G
Sbjct: 432 GSSSMASVCGGCLSMLDAGVPLKAHVAGIAMGLIKEGNRFA------VLSDILGDEDHLG 485
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG+E+GITA QMDIK+ GIT +M+ AL QAK+GR HIL M + + LS
Sbjct: 486 DMDFKVAGSENGITALQMDIKINGITREIMQAALSQAKEGRLHILGIMKESMSGVRSELS 545
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + MK+ PEKI +IG GG ++++ EETG ID +D G + I++ + + E +
Sbjct: 546 EFAPRMIKMKINPEKIRDVIGKGGAVIRALTEETGT-TIDIDDAGNITISSVNGEAGELA 604
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ M VG IY +K + +G + I PG++GL HIS+++ + D +K
Sbjct: 605 KKRIEDIAMDVEVGKIYEGPVVK-LLDFGALINILPGKDGLLHISQIAHERVNSVGDYLK 663
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
G +V VKL+E++D+G+++LS +ALL
Sbjct: 664 EGQVVRVKLLEMDDRGRMKLSMKALL 689
>gi|421565103|ref|ZP_16010889.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3081]
gi|433536445|ref|ZP_20492953.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
77221]
gi|402345432|gb|EJU80549.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3081]
gi|432274395|gb|ELL29483.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
77221]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GF+H+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|390169556|ref|ZP_10221490.1| polynucleotide phosphorylase/polyadenylase [Sphingobium indicum
B90A]
gi|389587830|gb|EIM65891.1| polynucleotide phosphorylase/polyadenylase [Sphingobium indicum
B90A]
Length = 771
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/751 (41%), Positives = 442/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I G + + +ETG + RQA AV T GET++ +V A E DFFPL V+YQE+
Sbjct: 7 VSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ VLS+DG P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGESEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I RVG ++ +NP+ E++ +LDL++A + +A+
Sbjct: 127 DIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATGNAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSE++++ AV +A +++ N + L E K +L K +
Sbjct: 187 MMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLDDLKKKL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G+++ ++ +K R A+++ +K +E G
Sbjct: 247 KKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGL-------------------- 286
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D + V+ G +KL K++ ++ +R I++ G+R D
Sbjct: 287 --DAQTVMAG-------------------------IKLT-KKLEAEIVRTAILKEGKRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + + F
Sbjct: 319 GRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLHYESF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS +FPYTIRV S ITESNG
Sbjct: 378 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKEEFPYTIRVLSDITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ EF ++SDI G ED GD
Sbjct: 438 SSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFA------VISDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E GIT QMDIKV GIT + + AL+QAK+GR HIL EM K LS
Sbjct: 492 MDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKALSSTRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D++ +E +K
Sbjct: 552 HAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGIIKISSSDINQIEAAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG IY ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 611 KWILGIVEEAEVGKIY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVVSE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E E
Sbjct: 670 GQEVKVKVLEIDPRGKVRLSMRVVDQETGEE 700
>gi|123440817|ref|YP_001004808.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332160083|ref|YP_004296660.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|386311118|ref|YP_006007174.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|418239855|ref|ZP_12866399.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|433551947|ref|ZP_20507987.1| Polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
IP 10393]
gi|187611341|sp|A1JIX3.1|PNP_YERE8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33332421|gb|AAQ11418.1| PNPase [Yersinia enterocolitica]
gi|122087778|emb|CAL10564.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318607357|emb|CBY28855.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664313|gb|ADZ40957.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862022|emb|CBX72189.1| polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
W22703]
gi|351780681|gb|EHB22746.1| polynucleotide phosphorylase/polyadenylase [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|431787245|emb|CCO71027.1| Polyribonucleotide nucleotidyltransferase [Yersinia enterocolitica
IP 10393]
Length = 706
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 435/746 (58%), Gaps = 60/746 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 HARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L ++D +R R++ G
Sbjct: 297 LGSVEKD-------------------------------------------VVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
+++G V VK+IEV+ +G++RLS +
Sbjct: 665 YLQMGQEVPVKVIEVDRQGRIRLSMK 690
>gi|269214445|ref|ZP_06158584.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
gi|269209893|gb|EEZ76348.1| polyribonucleotide nucleotidyltransferase [Neisseria lactamica ATCC
23970]
Length = 707
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALLTEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|161869702|ref|YP_001598869.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
053442]
gi|418287979|ref|ZP_12900504.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM233]
gi|418290239|ref|ZP_12902408.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM220]
gi|421556983|ref|ZP_16002892.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
80179]
gi|189037311|sp|A9M3J0.1|PNP_NEIM0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|161595255|gb|ABX72915.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
053442]
gi|372201926|gb|EHP15797.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM220]
gi|372202788|gb|EHP16558.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM233]
gi|402335668|gb|EJU70932.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
80179]
Length = 706
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQAAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|427410970|ref|ZP_18901172.1| polyribonucleotide nucleotidyltransferase [Sphingobium yanoikuyae
ATCC 51230]
gi|425710620|gb|EKU73641.1| polyribonucleotide nucleotidyltransferase [Sphingobium yanoikuyae
ATCC 51230]
Length = 771
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/751 (40%), Positives = 438/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I + + +ETG + RQA AV T GET++ +V A + DFFPL V+YQE+
Sbjct: 7 VSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKDGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ V+S+DG P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVMSFDGESEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I RVG ++ +NP+ E++ +LDL++A + +A+
Sbjct: 127 DIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATSNAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSE++++ AV +A +++ + + L E K L +
Sbjct: 187 MMVESEAKELSEDVMLGAVLFAHEASKKVVDAIIQLAEKAAKDPWEMAKGDDLGALKTKL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G ++ ++ +K R AL+ K + +E+G
Sbjct: 247 KDLIGGDIAAAYKLTDKSARSNALNEARAKAKAMFTEDGL-------------------- 286
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D + V+ G +KL K++ ++ +R I++ G+R D
Sbjct: 287 --DAQTVMAG-------------------------IKLT-KKLEAEIVRGAILKDGQRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + + F
Sbjct: 319 GRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLHYENF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ ++FPYTIRV S ITESNG
Sbjct: 378 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKDEFPYTIRVLSDITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F ++SDI G ED GD
Sbjct: 438 SSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGSDFA------VISDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E GIT QMDIKV GIT + + AL+QAK+GR HIL EM K LS
Sbjct: 492 MDFKVAGTEAGITTMQMDIKVAGITQEIFETALRQAKEGRAHILGEMNKALSSTRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D + +E +K
Sbjct: 552 HAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGIIKISSSDTAQIEAAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG IY ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 611 KWILGIVEEAEVGKIY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVVSE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E E
Sbjct: 670 GQEVKVKVLEIDPRGKVRLSMRVVDQETGEE 700
>gi|290893558|ref|ZP_06556541.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J2-071]
gi|404407768|ref|YP_006690483.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2376]
gi|290556903|gb|EFD90434.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J2-071]
gi|404241917|emb|CBY63317.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2376]
Length = 723
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/750 (40%), Positives = 443/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L ++ E +G V I +++E ++
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE--- 306
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+RR I + R DGR
Sbjct: 307 -------------------------------------------MRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|229900960|ref|ZP_04516084.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|187611438|sp|Q1CM51.2|PNP_YERPN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|229682299|gb|EEO78391.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
Length = 705
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 431/744 (57%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A ++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSEE ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWQAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L V +R R++ G
Sbjct: 297 L-------------------------------------------ASVEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQDVPVKVMEVDRQGRIRLS 688
>gi|229180084|ref|ZP_04307428.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|423412388|ref|ZP_17389508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|423431827|ref|ZP_17408831.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
gi|228603293|gb|EEK60770.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 172560W]
gi|401104456|gb|EJQ12433.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG3O-2]
gi|401116583|gb|EJQ24421.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG4O-1]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|333925319|ref|YP_004498898.1| polyribonucleotide nucleotidyltransferase [Serratia sp. AS12]
gi|333930272|ref|YP_004503850.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica AS9]
gi|386327143|ref|YP_006023313.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS13]
gi|333471879|gb|AEF43589.1| Polyribonucleotide nucleotidyltransferase [Serratia plymuthica AS9]
gi|333489379|gb|AEF48541.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS12]
gi|333959476|gb|AEG26249.1| Polyribonucleotide nucleotidyltransferase [Serratia sp. AS13]
Length = 707
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/757 (40%), Positives = 435/757 (57%), Gaps = 59/757 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + +++++NPTT E+++S LDL++AG+
Sbjct: 124 VNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTTDELKESSLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G + + + + +LV GKPK L+
Sbjct: 184 GAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAVNEALH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A L I K R + +++ V+ L +++DET+ D
Sbjct: 244 ARVAELAESRLGDAYHITEKQERYAQVDAIKSSVVEAL-----LAQDETL-------DAS 291
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E +D + V +R R++ G
Sbjct: 292 EIQD-------------------------------------ILGSVEKNVVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGE-KT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DFPYT+RV S ITE
Sbjct: 374 DSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 FAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + A PEA + P
Sbjct: 666 LQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAP 702
>gi|405755460|ref|YP_006678924.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2540]
gi|404224660|emb|CBY76022.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2540]
Length = 723
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/750 (40%), Positives = 443/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIATVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L ++ E +G V I +++E ++
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE--- 306
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+RR I + R DGR
Sbjct: 307 -------------------------------------------MRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISEPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|217964522|ref|YP_002350200.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
HCC23]
gi|254824610|ref|ZP_05229611.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J1-194]
gi|254852619|ref|ZP_05241967.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL R2-503]
gi|254932354|ref|ZP_05265713.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
HPB2262]
gi|255520235|ref|ZP_05387472.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
FSL J1-175]
gi|300765429|ref|ZP_07075411.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N1-017]
gi|386008102|ref|YP_005926380.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
L99]
gi|386026703|ref|YP_005947479.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
M7]
gi|404280885|ref|YP_006681783.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2755]
gi|404286750|ref|YP_006693336.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405749673|ref|YP_006673139.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
ATCC 19117]
gi|424823094|ref|ZP_18248107.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. Scott A]
gi|254782725|sp|B8DFZ6.1|PNP_LISMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217333792|gb|ACK39586.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Listeria monocytogenes HCC23]
gi|258605934|gb|EEW18542.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL R2-503]
gi|293583910|gb|EFF95942.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
HPB2262]
gi|293593848|gb|EFG01609.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J1-194]
gi|300513866|gb|EFK40931.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N1-017]
gi|307570912|emb|CAR84091.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
L99]
gi|332311774|gb|EGJ24869.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. Scott A]
gi|336023284|gb|AEH92421.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
M7]
gi|404218873|emb|CBY70237.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
ATCC 19117]
gi|404227520|emb|CBY48925.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2755]
gi|404245679|emb|CBY03904.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
serotype 7 str. SLCC2482]
Length = 723
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/750 (40%), Positives = 443/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L ++ E +G V I +++E ++
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE--- 306
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+RR I + R DGR
Sbjct: 307 -------------------------------------------MRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|418615580|ref|ZP_13178522.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU118]
gi|418634000|ref|ZP_13196398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU129]
gi|420191251|ref|ZP_14697184.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM037]
gi|420204196|ref|ZP_14709756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM015]
gi|374817019|gb|EHR81210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU118]
gi|374837992|gb|EHS01549.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU129]
gi|394257852|gb|EJE02757.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM037]
gi|394274210|gb|EJE18635.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM015]
Length = 701
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 315/747 (42%), Positives = 450/747 (60%), Gaps = 63/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ P + + VE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVTF--QQEIIDHIQ-PIKQEFVPVE 237
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTI----LSENGYVSKDETVGIVETIPDLL 388
E+LV+ K+ R L+E VLT EN K+E VG L
Sbjct: 238 R--DEDLVE------KVKRLTEDKGLKETVLTFDKQQRDENLDALKEEVVG------HFL 283
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
++ED + E +V +V + ++ + +RR I +
Sbjct: 284 DEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIADEKI 318
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 319 RPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE- 377
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S + E
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSEVLE 437
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 438 SNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMEDA 491
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 492 LGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQPREE 551
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 552 LSAYAPKVVTMSIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMIN 610
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K EDV
Sbjct: 611 RAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVEDV 669
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+K+GD ++VK+ E++ +G++ S + L
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|16803371|ref|NP_464856.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
EGD-e]
gi|47095916|ref|ZP_00233519.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 1/2a F6854]
gi|254827592|ref|ZP_05232279.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N3-165]
gi|254912005|ref|ZP_05262017.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J2818]
gi|254936332|ref|ZP_05268029.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
F6900]
gi|284801716|ref|YP_003413581.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5578]
gi|284994858|ref|YP_003416626.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5923]
gi|386046983|ref|YP_005965315.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
J0161]
gi|386050307|ref|YP_005968298.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL R2-561]
gi|386053584|ref|YP_005971142.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
Finland 1998]
gi|404283822|ref|YP_006684719.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2372]
gi|405758378|ref|YP_006687654.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2479]
gi|81509180|sp|Q8Y7F1.1|PNP_LISMO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|16410747|emb|CAC99409.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
EGD-e]
gi|47015662|gb|EAL06592.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 1/2a F6854]
gi|258599969|gb|EEW13294.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL N3-165]
gi|258608922|gb|EEW21530.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
F6900]
gi|284057278|gb|ADB68219.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5578]
gi|284060325|gb|ADB71264.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
08-5923]
gi|293589970|gb|EFF98304.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J2818]
gi|345533974|gb|AEO03415.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
J0161]
gi|346424153|gb|AEO25678.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL R2-561]
gi|346646235|gb|AEO38860.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
Finland 1998]
gi|404233324|emb|CBY54727.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2372]
gi|404236260|emb|CBY57662.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2479]
Length = 723
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 446/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKTAIKTEEKKAREAAIEEVKEEIL-----ESYKAKE------------LENESE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|295687493|ref|YP_003591186.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
21756]
gi|295429396|gb|ADG08568.1| polyribonucleotide nucleotidyltransferase [Caulobacter segnis ATCC
21756]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/748 (40%), Positives = 435/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNYQE+
Sbjct: 9 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTF 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 69 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ LS P I RVG V +++NPT EM++S++DL++AG+ DA++M
Sbjct: 129 LGMVAASAALTLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADAVMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V ++ + + + L E K P+ D IK
Sbjct: 189 VESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDAIK------ 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++ I G ++ +I K R +A+ + ++K + L ++
Sbjct: 243 -AEMKGIVGADIAAGYKITKKQDRYEAIGNAKKKAIEALGKS------------------ 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+ P + + +FKE+ + +RR I++ G
Sbjct: 284 ----------------------------DTNPAGYDPQKLAAIFKELEADVVRRGILDTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 316 LRIDGRDVRTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LPS DFPYTIR+ S IT
Sbjct: 376 -ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPSKEDFPYTIRLVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEKDGFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+T+ QMDIK+ GIT +M++AL QAK+GR HIL EM K P
Sbjct: 489 HLGDMDFKVAGTSEGLTSLQMDIKIAGITPQIMEQALAQAKEGRAHILGEMNKAMDAPRE 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ AP I + + +KI +IGSGGK ++ I+ TG + +D DDG VK++A D + +
Sbjct: 549 DVGDFAPKIETITIPTDKIREVIGSGGKVIREIVATTGAK-VDINDDGIVKVSASDGAKI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T VG IY + ++ + +G FV ++GL H+S++S+ +AK D
Sbjct: 608 KAAIDWIKSITDEAEVGKIY-DGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 667 VLKEGQMVKVKLLGFDDRGKTKLSMKVV 694
>gi|440229154|ref|YP_007342947.1| polyribonucleotide nucleotidyltransferase [Serratia marcescens
FGI94]
gi|440050859|gb|AGB80762.1| polyribonucleotide nucleotidyltransferase [Serratia marcescens
FGI94]
Length = 706
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 428/744 (57%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDHFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG V D++++NPT E+++S+LDL++AG+
Sbjct: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYVNDQYVLNPTVDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E + LSE+ ++ AV G + + + + + +LV GKPK D P E L
Sbjct: 184 GAVLMVESEAEVLSEDQMLGAVVFGHEQQQVVIDNINSLVAEVGKPK-WDWQPTPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+A L QI K R + +++E V L E +DET
Sbjct: 243 QARVAELAQSRLGDAYQITEKQDRYAQVDAIKEDVTAALLE-----QDET---------- 287
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D++ ++ +R R++ G
Sbjct: 288 ----------------------------------LDAADIQDALSDLEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L + +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGE-K 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DFPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH MK+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISQFAPRIHTMKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KYAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|167040276|ref|YP_001663261.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter sp.
X514]
gi|256750798|ref|ZP_05491683.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914360|ref|ZP_07131676.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307724404|ref|YP_003904155.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
gi|257096713|sp|B0K1D0.1|PNP_THEPX RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166854516|gb|ABY92925.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X514]
gi|256750381|gb|EEU63400.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889295|gb|EFK84441.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X561]
gi|307581465|gb|ADN54864.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter sp.
X513]
Length = 700
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/753 (41%), Positives = 441/753 (58%), Gaps = 59/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R++LV+ G + +QA+GA V G+T++ + C + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D
Sbjct: 65 RLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P V VGLV +FI+NP ++ E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFDGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE ++ A+ + +++I ++ +V+ G PK + EL +
Sbjct: 185 IVMVEAGAKEVPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEIDKELEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A E++ L+ K R L +E++VL E PD L D
Sbjct: 245 VRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEE--------------YPDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V + + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYNIMKEQMRKMITEERIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q +D + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGI-GDEEAKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG LAERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + D +L+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVS------VLTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++K AL++A+ GR +IL++ML+ P LS
Sbjct: 488 DMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKEPRKQLS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M V PEKI IIG GGK + II ETGV+ ID E+DG + ITA DL S E++
Sbjct: 548 VYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVK-IDIEEDGRLYITASDLRSGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T VG+IY ++ I P+G FVEIAPG+EGL HIS+LS + K EDVVK
Sbjct: 607 KQMIEAITKDIAVGEIYLG-KVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VGD + VK+ +++ G++ LSR+ LP+ + E
Sbjct: 666 VGDDILVKVTDIDKLGRISLSRKDALPDEEEEE 698
>gi|50119663|ref|YP_048830.1| polynucleotide phosphorylase [Pectobacterium atrosepticum SCRI1043]
gi|81646171|sp|Q6D9A1.1|PNP_ERWCT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49610189|emb|CAG73631.1| polyribonucleotide nucleotidyltransferase [Pectobacterium
atrosepticum SCRI1043]
Length = 706
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/758 (40%), Positives = 439/758 (57%), Gaps = 58/758 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKNAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P S I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 123 QVSPDIVAMIGASAALSLSGIPFSGPIGVARVGYLNDQYVLNPTTDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
A+LM+E + LSE+ ++ AV G + + + + +LV GKPK L
Sbjct: 183 QGAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPAVNVSL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ ++ L +I K R ++ ++ V+ L ++DET+
Sbjct: 243 EQRVQALSEARLGDAYRITEKQERYAQVNVIKTDVVAALQ-----AEDETLNA------- 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
GE+ E + + +R R++ G
Sbjct: 291 -------------GEIQE------------------------ILGNIEKNVVRGRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L + +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL-TGER 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV S IT
Sbjct: 373 TDRFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTV+I + D
Sbjct: 547 DISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVRIASTDGEKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
+++G V VK++EV+ +G++RLS + P+ P
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLSIKEANPQTQEAAAP 702
>gi|228960024|ref|ZP_04121688.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628900|ref|ZP_17604649.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
gi|228799540|gb|EEM46493.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268445|gb|EJR74493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD154]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/745 (41%), Positives = 447/745 (60%), Gaps = 62/745 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI--------------------------EHYE 282
Query: 394 DEEVVVD--GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+E VD G+V+E +L+ K+V +EV RR I R D
Sbjct: 283 AQEADVDTLGQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPD 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 319 GRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNG
Sbjct: 378 MHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GD
Sbjct: 438 STSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS
Sbjct: 492 MDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K
Sbjct: 552 YAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
II ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+
Sbjct: 611 KIIEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKI 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD++ VK+IE++ +G++ LSR+ LL
Sbjct: 670 GDVITVKVIEIDKQGRVNLSRKVLL 694
>gi|385339734|ref|YP_005893606.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
gi|416205686|ref|ZP_11620634.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|433466908|ref|ZP_20424365.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
87255]
gi|325142036|gb|EGC64468.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
961-5945]
gi|325197978|gb|ADY93434.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
G2136]
gi|432203484|gb|ELK59535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
87255]
Length = 706
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|384261348|ref|YP_005416534.1| Polyribonucleotide nucleotidyltransferase [Rhodospirillum
photometricum DSM 122]
gi|378402448|emb|CCG07564.1| Polyribonucleotide nucleotidyltransferase [Rhodospirillum
photometricum DSM 122]
Length = 710
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/745 (41%), Positives = 437/745 (58%), Gaps = 69/745 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R +++ETG + RQA GAV + G+T + + A S DFFPL VNYQE+
Sbjct: 10 EIEWGGRTLVLETGKVARQADGAVMASLGDTTVLCTAVGARKAS-AFDFFPLTVNYQEKT 68
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + E LV RLIDRP+RP ++G+ ETQ+++ VL +D + PD
Sbjct: 69 FAAGKIPGGFFKREGRPSERETLVSRLIDRPIRPLFVEGYRCETQVVATVLCHDLENDPD 128
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+++ A A+ LS +P I RVG++ F++NPT ++ S LDL++AG+ + +L
Sbjct: 129 IVSMIGASAALTLSGLPFLGPIGAARVGMIDGAFVLNPTREQQTRSCLDLVVAGTREGVL 188
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYK-- 329
M+E L+E+ ++ AV G ++ + + N + L E C + P+ ++ P P L
Sbjct: 189 MVESEAKELTEQQMLDAVMFGHESYQPVINAIIELAEQCAREPR---AVEPPSPALVAIE 245
Query: 330 -HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V +A L +K+ R +S++++ V+ L+E+ +KD G
Sbjct: 246 DKVRALAEAGLRAAYAEADKMARHDRVSAVKDHVVAALAEDP--AKDLVAG--------- 294
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
VFK++ + +R I++ GR
Sbjct: 295 -----------------------------------------VFKDLEKEIVRGAILDTGR 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI + G+LPRAHGSALFTRGETQ+L V TLG Q Q ID LE +
Sbjct: 314 RIDGRDTRTVRPIEAIVGVLPRAHGSALFTRGETQALVVTTLGTGQDEQIIDALEGEYR- 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P++P ++FPYT+R+ S ITE
Sbjct: 373 ENFMLHYNFPPYSVGETGRLGSPGRREIGHGKLAWRALHPMMPPKSEFPYTVRIVSEITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG LAL DAGVP+K +AG+AMG++ + D F +LSDI G ED
Sbjct: 433 SNGSSSMATVCGSSLALMDAGVPLKAPVAGIAMGLIKEEDRFA------VLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG G+T+ QMDIK+ IT +M AL QA+DGR HIL EM K +
Sbjct: 487 LGDMDFKVAGTAQGVTSLQMDIKITSITREIMAIALDQARDGRTHILGEMAKALGDARDG 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS AP I +K+ P+K+ +IGSGGK ++ I E TG + ID EDDGT+KI + D + +
Sbjct: 547 LSDFAPRITTIKIPPQKVREVIGSGGKVIREITETTGTK-IDIEDDGTIKIASADGDAAQ 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ I + P +G IY +K + +G FV R+GL HISELSS + K DV
Sbjct: 606 RAVDWIRGIVAEPEMGAIYIGKVVK-VMDFGAFVNFLGTRDGLVHISELSSERVRKVTDV 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRR 833
VGD V VK I +D+G+++LS +
Sbjct: 665 TNVGDQVKVKCIGFDDRGKVKLSMK 689
>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
Length = 713
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 315/753 (41%), Positives = 448/753 (59%), Gaps = 57/753 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L + Y + + +
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEV------------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE V G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 285 EEAVAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KV G DG+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVVGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGHVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPE--ADAENPP 845
V VK+I+ ++KG++RLS +ALL E A A+ PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAAQADTPP 711
>gi|421729364|ref|ZP_16168501.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca
M5al]
gi|410369906|gb|EKP24650.1| polynucleotide phosphorylase/polyadenylase [Klebsiella oxytoca
M5al]
Length = 712
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/744 (40%), Positives = 436/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G D + + + LV+ GKP+ ++ L
Sbjct: 183 EAAVLMVESEAELLSEDQMLGAVVFGHDQQQIVIQNINDLVKEAGKPRWDWQPEVVDAAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + +++ + + L V++DE++
Sbjct: 243 NARVAALAESRLSDAYRITDKQERYAQVDAIKSETIATL-----VAEDESL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D +E E+ + +R R++ G
Sbjct: 289 --DANELGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ +FPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 QHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|421567203|ref|ZP_16012939.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3001]
gi|402344214|gb|EJU79355.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3001]
Length = 706
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/749 (41%), Positives = 437/749 (58%), Gaps = 72/749 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQD-------AVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
L E++++ AV G D A+ E ++EV V P+ + EL
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEVNLEVWDWKAPETNE-------ELV 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V IAGE + + +I+ K R L DE V+
Sbjct: 244 AKVRGIAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK------ 278
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ++ E D + ++K +FK + + +R +I++G
Sbjct: 279 -------EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQP 315
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S +
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYT 374
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITE
Sbjct: 375 DRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITE 434
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED
Sbjct: 435 SNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDH 488
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P
Sbjct: 489 LGDMDFKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QE 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS HAP + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + +
Sbjct: 548 LSAHAPRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGD 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K I +T VG +Y +K + G V + PG++GL HIS+++ + D
Sbjct: 607 AAKKRIEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
+KVG +V+VK +EV+D+G++RLS +ALL
Sbjct: 667 YLKVGQVVNVKALEVDDRGRVRLSIKALL 695
>gi|114778695|ref|ZP_01453507.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
gi|114551057|gb|EAU53619.1| polyribonucleotide nucleotidyltransferase [Mariprofundus
ferrooxydans PV-1]
Length = 705
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/736 (42%), Positives = 433/736 (58%), Gaps = 57/736 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R I ETG + RQA G++ G+ +++ + A P + DF PL V+YQE+ AAGR
Sbjct: 22 RTISFETGRVARQAGGSILAQVGDVVVHVAATCAKQPLQGVDFMPLTVHYQEKTYAAGRF 81
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGFFKREGR + E L RLIDRP+RP KG++HETQ+++ V+S D PD +A+
Sbjct: 82 LGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGYFHETQVIATVMSVDEGTNPDIVAING 141
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A+A+S++P ++ IA RVGL+ +FI+NP+ +++ +S LDL++AG+ DA+LMIE
Sbjct: 142 VSAALAISDIPFAEPIAASRVGLIDGEFILNPSYEQVAESSLDLIVAGTRDAVLMIESEA 201
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
LSEE +I A+ GQ G +LD I+ EL K +AG+E
Sbjct: 202 KELSEEQMIDAISFGQ----------------AGYQPVLDAIE----ELVK----LAGKE 237
Query: 339 -LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEV 397
LV L N + ++ E V Y D++ +
Sbjct: 238 KLVIELAGGNSDVQDAVNAAFEADV-----RAAYAITDKSARAAKI-------------- 278
Query: 398 VVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADG 457
E K + P +S DV K + K +RR I+ G R DGR +
Sbjct: 279 ----EAFRAAAQAKFAGTEDAPGAYSSNDVSSAMKSLEKKVVRRSIIAGNPRIDGRATNQ 334
Query: 458 IRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSF 517
+R I + G+LPR HGSALFTRGETQ+L ITLG + Q ++LE + +RF L Y+F
Sbjct: 335 VRAIDCQVGVLPRTHGSALFTRGETQALVTITLGTESDMQMTESLEGVAK-QRFMLHYNF 393
Query: 518 PPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMAS 577
PP SVGE R G P RREIGHG LA R +E VLPS F Y IR S ITESNGSSSMAS
Sbjct: 394 PPYSVGEARRFGPPGRREIGHGRLARRGVEAVLPSMEKFGYAIRSVSEITESNGSSSMAS 453
Query: 578 VCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA 637
VCG LAL DAGVP+K ++AGVAMG++L+ D + +L+DI G ED GDMDFKVA
Sbjct: 454 VCGTSLALMDAGVPVKAAVAGVAMGLILEQDGYA------VLTDILGDEDHLGDMDFKVA 507
Query: 638 GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIH 697
G +G+T Q+DIK+GG+T +M++AL QA GR HIL EM KC P +++ HAP +
Sbjct: 508 GTREGVTTLQLDIKIGGLTREIMQEALAQAHAGRMHILDEMAKCMETPRGAIADHAPRMF 567
Query: 698 IMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNL 757
MKVK +KI +IG+GGK ++ I+E TG + +D EDDGT+KI A + E +K +I ++
Sbjct: 568 TMKVKVDKIREVIGAGGKVIRGIVEATGAK-VDIEDDGTIKIFAVTGDAGEAAKKMIEDI 626
Query: 758 TMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDV 817
VG IY +K + +G FV + G +GL HIS+++++ + K D +K G V V
Sbjct: 627 VAEVEVGAIYTGKVVK-LMDFGAFVRVVGGTDGLVHISQIANHRVEKVADELKEGQEVRV 685
Query: 818 KLIEVNDKGQLRLSRR 833
K++EV+ +G++RLS +
Sbjct: 686 KVLEVDRQGKIRLSMK 701
>gi|404413407|ref|YP_006698994.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC7179]
gi|404239106|emb|CBY60507.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC7179]
Length = 723
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 446/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQTEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKTAIKTEEKKAREAAIEEVKEEIL-----ESYKAKE------------LENESE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|152972088|ref|YP_001337234.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896671|ref|YP_002921416.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|365144133|ref|ZP_09348520.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp.
4_1_44FAA]
gi|378980868|ref|YP_005229009.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|386036720|ref|YP_005956633.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
KCTC 2242]
gi|402778829|ref|YP_006634375.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|419972234|ref|ZP_14487663.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419978229|ref|ZP_14493526.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419984969|ref|ZP_14500113.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419989185|ref|ZP_14504162.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419995313|ref|ZP_14510120.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420001326|ref|ZP_14515982.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420007136|ref|ZP_14521631.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420013017|ref|ZP_14527329.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420018740|ref|ZP_14532936.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420026292|ref|ZP_14540295.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420029666|ref|ZP_14543495.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420037496|ref|ZP_14551150.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420041290|ref|ZP_14554787.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420047456|ref|ZP_14560773.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420052761|ref|ZP_14565941.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420060308|ref|ZP_14573309.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420064912|ref|ZP_14577720.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420072122|ref|ZP_14584763.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420076854|ref|ZP_14589323.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420081957|ref|ZP_14594260.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421911616|ref|ZP_16341369.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|421919440|ref|ZP_16348942.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|424832557|ref|ZP_18257285.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424931607|ref|ZP_18349979.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425074692|ref|ZP_18477795.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|425083355|ref|ZP_18486452.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|425085328|ref|ZP_18488421.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|425093479|ref|ZP_18496563.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|428149571|ref|ZP_18997385.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|428932318|ref|ZP_19005898.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
JHCK1]
gi|428939372|ref|ZP_19012482.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
VA360]
gi|449059559|ref|ZP_21737253.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
hvKP1]
gi|187610278|sp|A6TEI3.1|PNP_KLEP7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|150956937|gb|ABR78967.1| polynucleotide phosphorylase, has polyadenylase activity
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238548998|dbj|BAH65349.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|339763848|gb|AEK00069.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
KCTC 2242]
gi|363648599|gb|EHL87757.1| polyribonucleotide nucleotidyltransferase [Klebsiella sp.
4_1_44FAA]
gi|364520279|gb|AEW63407.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|397352062|gb|EJJ45143.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397352512|gb|EJJ45591.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397353287|gb|EJJ46362.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397368066|gb|EJJ60674.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397370017|gb|EJJ62609.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397372217|gb|EJJ64713.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397380928|gb|EJJ73106.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397385248|gb|EJJ77352.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397389983|gb|EJJ81905.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397395422|gb|EJJ87128.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397402877|gb|EJJ94472.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397405427|gb|EJJ96890.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397417242|gb|EJK08411.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397418897|gb|EJK10051.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397424893|gb|EJK15781.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397432750|gb|EJK23407.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397434169|gb|EJK24809.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397439608|gb|EJK30047.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397446810|gb|EJK37018.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452684|gb|EJK42751.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|402539780|gb|AFQ63929.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae 1084]
gi|405594895|gb|EKB68285.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW1]
gi|405598556|gb|EKB71758.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW2]
gi|405607360|gb|EKB80329.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW3]
gi|405611024|gb|EKB83813.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae WGLW5]
gi|407805794|gb|EKF77045.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410114520|emb|CCM83994.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|410118291|emb|CCM91567.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|414710000|emb|CCN31704.1| polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426304061|gb|EKV66214.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
VA360]
gi|426307204|gb|EKV69290.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
JHCK1]
gi|427540331|emb|CCM93523.1| Polyribonucleotide nucleotidyltransferase [Klebsiella pneumoniae
subsp. pneumoniae ST512-K30BO]
gi|448874723|gb|EMB09756.1| polynucleotide phosphorylase/polyadenylase [Klebsiella pneumoniae
hvKP1]
Length = 711
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/757 (40%), Positives = 439/757 (57%), Gaps = 62/757 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G + + + + LV+ GKP+ + L
Sbjct: 183 EAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + ++ + + L V++DET+
Sbjct: 243 NARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATL-----VAEDETL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D +E E+ + +R R++ G
Sbjct: 289 --DANELGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ +FPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 QHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + EA + P
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS----IKEATEQTP 697
>gi|421781345|ref|ZP_16217812.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica A30]
gi|407756554|gb|EKF66670.1| polyribonucleotide nucleotidyltransferase [Serratia plymuthica A30]
Length = 707
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/757 (40%), Positives = 435/757 (57%), Gaps = 59/757 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + +++++NPTT E+++S LDL++AG+
Sbjct: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINNQYVLNPTTDELKESSLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G + + + + +LV GKPK L+
Sbjct: 184 GAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWDWQAPAINEALH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A L I K R + +++ V+ L +++DET+ D
Sbjct: 244 ARVAELAESRLGDAYHITEKQERYAQVDAIKSSVVEAL-----LAQDETL-------DAS 291
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E +D + V +R R++ G
Sbjct: 292 EIQD-------------------------------------ILGSVEKNVVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGE-KT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DFPYT+RV S ITE
Sbjct: 374 DSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 FAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + A PEA + P
Sbjct: 666 LQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSSAP 702
>gi|422809411|ref|ZP_16857822.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J1-208]
gi|378753025|gb|EHY63610.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
FSL J1-208]
Length = 723
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/750 (40%), Positives = 444/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L ++ E +G V I +++E ++
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILGEVAHILEMIEKDE--- 306
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+RR I + R DGR
Sbjct: 307 -------------------------------------------MRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|417313784|ref|ZP_12100491.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J1816]
gi|328468614|gb|EGF39614.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
J1816]
Length = 728
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 447/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|167037615|ref|YP_001665193.1| polynucleotide phosphorylase/polyadenylase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116030|ref|YP_004186189.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|257096712|sp|B0K9P4.1|PNP_THEP3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|166856449|gb|ABY94857.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929121|gb|ADV79806.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 700
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/753 (41%), Positives = 442/753 (58%), Gaps = 59/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R++LV+ G + +QA+GA V G+T++ + C + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D
Sbjct: 65 RLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V VGLV +FI+NP ++ E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE ++ A+ + +++I ++ +V+ G PK + +L +
Sbjct: 185 IVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEIDKDLEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A E++ L+ K R L +E++VL E PD L D
Sbjct: 245 VRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEE--------------YPDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V + + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYNIMKEQMRKMITEERIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q +D + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGI-GDEEAKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG LAERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + D +L+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVS------VLTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++K AL++A+ GR +IL++ML+ P LS
Sbjct: 488 DMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILSKMLEVIKEPRKQLS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M V PEKI IIG GGK + II ETGV+ ID E+DG + ITA DL S E++
Sbjct: 548 VYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVK-IDIEEDGRLYITASDLRSGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T VG+IY ++ I P+G FVEIAPG+EGL HIS+LS + K EDVVK
Sbjct: 607 KQMIEAITKDIAVGEIYLG-KVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VGD + VK+ +++ G++ LSR+ LP+ + E
Sbjct: 666 VGDDILVKVTDIDKLGRISLSRKDALPDEEEEE 698
>gi|359409354|ref|ZP_09201822.1| polyribonucleotide nucleotidyltransferase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676107|gb|EHI48460.1| polyribonucleotide nucleotidyltransferase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 707
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 324/752 (43%), Positives = 440/752 (58%), Gaps = 67/752 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + I +ETG + RQA G V T GET + + A DFFPL VNYQE+
Sbjct: 9 IDWGGKTISLETGKIARQADGCVLATMGETTVLCTAVAAKKARPGQDFFPLTVNYQEKAF 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR ++E LV RLIDRP+RP K F ETQ++ VLS+D + PD
Sbjct: 69 AAGKIPGGFFKREGRPSENETLVSRLIDRPIRPLFPKEFKCETQVICTVLSHDMENNPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
+A+ A A+ LS VP IA RVG V +++NPT EM+DS LDL++AG+ + +LM
Sbjct: 129 VAMVGASAALTLSGVPFFGPIAAARVGFVDGGYVLNPTLSEMDDSALDLVVAGTKEGVLM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E LSE++++ AV G + ++ + + + L E+ K P +L + E
Sbjct: 189 VESEASELSEDVMLGAVTFGHEQMQTVIDAIVDLAEVAAK---------EPRDLPEEAPE 239
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETV---GIVETIPDLLED 390
A R L++L +K+ E Y D+T + E + LE
Sbjct: 240 AA--------------DLRDRLAALRDKI-----EAAYGHADKTARQAAVAEVKAEALE- 279
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
V E DE V V + K++ + +R I++ G R
Sbjct: 280 -------VAGAEADE-------------------VLVGGLMKDLEADVVRSSILKTGMRI 313
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI + GLLPR HGS+LFTRGETQ+L V TLG Q Q ID L + R
Sbjct: 314 DGRDTKTVRPIVAEVGLLPRTHGSSLFTRGETQALVVSTLGTGQDEQIIDALTGESRA-R 372
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR+G+P RREIGHG LA R+L P+LPS +FPYTIRV S ITESN
Sbjct: 373 FMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRSLNPLLPSKEEFPYTIRVVSEITESN 432
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ D DEF +LSDI G ED G
Sbjct: 433 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKDGDEFA------VLSDILGDEDHLG 486
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG + GITA QMDIK+ IT +M+ AL QA+DGR HIL EM K + L+
Sbjct: 487 DMDFKVAGTDAGITALQMDIKITSITPEIMQIALAQARDGRIHILGEMAKALTTARDGLA 546
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +K+ +KI +IG GGK ++ I+EETG + ID EDDG+V + A +S + +
Sbjct: 547 ESAPKITTLKIPVDKIREVIGPGGKMIREIVEETGAK-IDIEDDGSVSVAAVSQTSSDAA 605
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
A I + P +G+IY +K++ +G FV R+GL HISE+ + +A+ DV K
Sbjct: 606 LARIREIVAEPELGEIYTGKVVKTV-DFGAFVNFLGARDGLVHISEMKNERVAQTTDVCK 664
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD+V VK+I +D+G+++LS + + E A+
Sbjct: 665 EGDMVKVKVIGFDDRGKVKLSMKRVDQETGAD 696
>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
Length = 698
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 455/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + +++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E+K LV E+ +H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIKRLVAF-------------QEEVVEHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + R K+L+ L+E VLT + +DE + + E +
Sbjct: 228 PVK-KEFIPVERDEELVQRVKSLTEEKGLKETVLTFDKQQ----RDENLDALKAEIATEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ D + E+++D +V + ++ + +RR I +
Sbjct: 283 VDEADPENELLID-------------------------EVYAILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P +FPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTEFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P +
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQPRS 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + IM +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 551 ELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQEMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II+ +T VG +Y + ++K I YG FVE+ PG++ L HIS++S + + K ED
Sbjct: 610 NRAREIINEITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S + L
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|254418578|ref|ZP_05032302.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
gi|196184755|gb|EDX79731.1| 3' exoribonuclease family, domain 2 [Brevundimonas sp. BAL3]
Length = 745
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/743 (41%), Positives = 432/743 (58%), Gaps = 57/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + +ETG + RQA GAV T GET++ +V P DFFPL VNYQE+
Sbjct: 9 IEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRSPKPGLDFFPLTVNYQEKTF 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GG+FKREGR + E LV RLIDRP+RP +KGF +ETQ++ VL +D + PD
Sbjct: 69 AAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNETQVVITVLQHDMENDPDV 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ +S VP I RVGL+ + ++NPT ++ S LDL++AG+ DA++M
Sbjct: 129 LGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPTVDQIPGSDLDLVVAGTQDALMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E LSEE +++A+ ++ + + + L E K + D ++ +++
Sbjct: 189 VESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAK-EPFDFQAEDHSDVVTSIKK 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+ GE++ K RR + + ++ L V DE
Sbjct: 248 LVGEDIKAAYTHPGKYDRRSGVDAAKKTAAAAL-----VKTDEN---------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
P+ S+ + FKE + LRR I+E R DGR
Sbjct: 287 ------------------PEGVDSSKFAAA-------FKECEADVLRRDIIENAHRVDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +R I S G+LPR HGSALFTRGETQ+L V TLG + Q ID+L+ + + F L
Sbjct: 322 ALDKVRAIVSEVGVLPRTHGSALFTRGETQALVVATLGTGEDEQYIDSLQGTYK-ESFLL 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS DFPYTIR+ S ITESNGSS
Sbjct: 381 HYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSKEDFPYTIRLVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLD-TDEFGGDGTPLILSDITGSEDASGDM 632
SMA+VCG LAL DAGVP+ ++G+AMG++L+ + EF ILSDI G ED GDM
Sbjct: 441 SMATVCGSSLALMDAGVPLIRPVSGIAMGLILEPSGEFA------ILSDILGDEDHLGDM 494
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +GIT+ QMDIKV GIT +MK+AL QA GR HIL EM K P L +H
Sbjct: 495 DFKVAGTSEGITSLQMDIKVAGITKEIMKQALTQASAGRLHILDEMSKAMDAPRAELGEH 554
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I +K+ +KI +IGSGGK ++ I+E+TG + ID DDGT+K+ A D ++ +KA
Sbjct: 555 APKIETIKIAVDKIREVIGSGGKVIREIVEKTGAK-IDIGDDGTIKVAANDQEKIDAAKA 613
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I ++ P VG IY +K + +G FV ++GL H+S+++ +A DV+ G
Sbjct: 614 WIQSIASEPEVGTIYSGKVVK-VVDFGAFVNFFGAKDGLVHVSQIALERVANPADVLSEG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
V VK + +D+G+ +LS + +
Sbjct: 673 QEVKVKFLGFDDRGKTKLSMKVV 695
>gi|218232388|ref|YP_002368608.1| polynucleotide phosphorylase [Bacillus cereus B4264]
gi|226702617|sp|B7HDT0.1|PNP_BACC4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218160345|gb|ACK60337.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus B4264]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 449/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEV 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D +++ G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADIL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|315282187|ref|ZP_07870650.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
S4-120]
gi|313614173|gb|EFR87854.1| polyribonucleotide nucleotidyltransferase [Listeria marthii FSL
S4-120]
Length = 723
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 447/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKTAIKTEEKKAREAAIDDVKEEIL-----ESYKAKE------------LENESE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|299823025|ref|ZP_07054911.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
20601]
gi|299816554|gb|EFI83792.1| polyribonucleotide nucleotidyltransferase [Listeria grayi DSM
20601]
Length = 722
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/748 (41%), Positives = 450/748 (60%), Gaps = 56/748 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ +++ +E G + +QASGA V G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 12 WAGQKLSIEVGQLAKQASGAALVRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 71 GKVPGGFLKREGRPSDKATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + IA+ +S++P IAGV VGL+ K+++NPT ++ E S ++L +AG+ +AI M+E
Sbjct: 131 MLGSSIALCISDIPFDGPIAGVDVGLIDGKYVINPTPEQFEKSDINLTVAGTYEAINMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + +V+ GK K + + PEL V+ +
Sbjct: 191 AGAKEVSEEAMLEAIMFGHEEIKRLCKFQEEIVQAVGKEKREIELFVSDPELEAEVKAAS 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K E EDE
Sbjct: 251 EAKMKTAIKTEEKKAREAAIEDVKEEILET-----YKAK----------------ELEDE 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
V+ +V + + + +RR I + R DGR
Sbjct: 290 AAVL-------------------------AEVAHILEMIEKDEMRRLISQDKIRPDGRKV 324
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS GLLPR HGS LFTRG+TQ+L++ TL + Q ID L ++ E KRF Y
Sbjct: 325 NEIRPLSSETGLLPRVHGSGLFTRGQTQALSICTLAPLREHQIIDGLGTE-EYKRFMHHY 383
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 384 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 443
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T IL+DI G ED GDMDFK
Sbjct: 444 ASICGSTLAMMDAGVPIKAPVAGIAMGLV----KLGDDYT--ILTDIQGMEDHFGDMDFK 497
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL+QAK+GR HIL + P +LS +AP
Sbjct: 498 VAGTKDGITALQMDIKIDGLSRQILHEALEQAKEGRLHILEHLNATIAGPRETLSPYAPK 557
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV + ++D +K+ II
Sbjct: 558 IVTLSIKPEKIKDVIGPGGKQINNIIDETGVK-IDIEQDGTVYVASQDEEMNKKAIQIIE 616
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG+IY +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 617 DIVREVEVGEIY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 675
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAEN 843
VK+IEV+ +G++ LSR+AL+ + + E
Sbjct: 676 KVKVIEVDHQGRVNLSRKALIEKKEGEE 703
>gi|229146378|ref|ZP_04274749.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
gi|228637011|gb|EEK93470.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST24]
Length = 717
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|228922561|ref|ZP_04085861.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954083|ref|ZP_04116112.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229047493|ref|ZP_04193083.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|229071305|ref|ZP_04204528.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|229081062|ref|ZP_04213572.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|229111278|ref|ZP_04240831.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|229129083|ref|ZP_04258056.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|229152007|ref|ZP_04280202.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|229191976|ref|ZP_04318946.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|296504303|ref|YP_003666003.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|365159416|ref|ZP_09355597.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423425943|ref|ZP_17402974.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|423437262|ref|ZP_17414243.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|423503516|ref|ZP_17480108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|423582017|ref|ZP_17558128.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|423585784|ref|ZP_17561871.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|423635422|ref|ZP_17611075.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|423641112|ref|ZP_17616730.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|423649670|ref|ZP_17625240.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|423656666|ref|ZP_17631965.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|449090749|ref|YP_007423190.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228591527|gb|EEK49376.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10876]
gi|228631356|gb|EEK87990.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1550]
gi|228654320|gb|EEL10185.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-Cer4]
gi|228672054|gb|EEL27345.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock1-15]
gi|228702106|gb|EEL54582.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock4-2]
gi|228711759|gb|EEL63711.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F65185]
gi|228723740|gb|EEL75095.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH676]
gi|228805649|gb|EEM52239.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836990|gb|EEM82331.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296325355|gb|ADH08283.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
BMB171]
gi|363625414|gb|EHL76455.1| polyribonucleotide nucleotidyltransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401110690|gb|EJQ18589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-2]
gi|401120417|gb|EJQ28213.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X12-1]
gi|401212896|gb|EJR19637.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD014]
gi|401233130|gb|EJR39626.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD045]
gi|401278173|gb|EJR84109.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD156]
gi|401280173|gb|EJR86095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD166]
gi|401282950|gb|EJR88847.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD169]
gi|401290407|gb|EJR96101.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD200]
gi|402458870|gb|EJV90610.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HD73]
gi|449024506|gb|AGE79669.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|238787597|ref|ZP_04631395.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
gi|238724384|gb|EEQ16026.1| Polyribonucleotide nucleotidyltransferase [Yersinia frederiksenii
ATCC 33641]
Length = 706
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/743 (41%), Positives = 434/743 (58%), Gaps = 58/743 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK ++ L+
Sbjct: 184 AAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEVVNEALH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A L +I K R + +++ V L +++D+T+ E I D+L
Sbjct: 244 ARVAELAEVRLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDIL 297
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
++D +R R++ G
Sbjct: 298 GSVEKD-------------------------------------------VVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-RT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S ITE
Sbjct: 374 DSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVMAVMPSPSEFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D +
Sbjct: 548 ISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 HAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 666 LQMGQEVPVKVMEVDRQGRIRLS 688
>gi|416172731|ref|ZP_11608808.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
gi|325129928|gb|EGC52729.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
OX99.30304]
Length = 706
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|218782571|ref|YP_002433889.1| polynucleotide phosphorylase/polyadenylase [Desulfatibacillum
alkenivorans AK-01]
gi|257096685|sp|B8FCZ0.1|PNP_DESAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218763955|gb|ACL06421.1| Polyribonucleotide nucleotidyltransferase [Desulfatibacillum
alkenivorans AK-01]
Length = 712
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/768 (40%), Positives = 453/768 (58%), Gaps = 63/768 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+++ GD+ + ++TG + +QASG+V V+ GETI +V + DF PL+V YQ
Sbjct: 3 VTLERNLGDKPLRIQTGKLAKQASGSVVVSYGETITLVTVVGSQELRPGIDFVPLSVEYQ 62
Query: 150 ERFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
E+ AAGR G +F+RE GR + E L RLIDRP+RP K + +ETQ+++ VLS D
Sbjct: 63 EKVYAAGRIPGNYFRREIGRPSEKETLTARLIDRPIRPLFPKTWRYETQVIATVLSMDQE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
+ PD L++ A A+ +S++P IA VRVG + + + NPT + E+ L++++AGS
Sbjct: 123 NDPDMLSMVGASAALCISDLPFFTPIACVRVGRIDGELVANPTISQQENCDLNIIVAGSR 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
D ++M+EG F+SEE ++ A+ GQ+++ + + L+E G PK L
Sbjct: 183 DGVVMVEGGGQFISEEEMLDAIYFGQESLEPLLEMQEELMEKAGVPKRSADPVEKDEYLA 242
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A E+ K L+I +K+ R+ A+ +++ V+ L E
Sbjct: 243 AKVAELADPEIKKALEINDKLERQDAIRDVKKTVMEGLGE-------------------- 282
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E ED +EV SE + T +R +++ GR
Sbjct: 283 EYEDRGKEV-------------------------SEF-----IHDRTRVIMRAMVLDEGR 312
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R GR D +RPI+ G+LPR HGSALFTRGETQSL ++TLG QR++ L D E
Sbjct: 313 RIGGRRFDEVRPITCEVGILPRTHGSALFTRGETQSLGILTLGSSGDEQRVETLYGD-ET 371
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SV EV RI PSRR+IGHG L+ RA++ VLPS DF YTIR+ S I E
Sbjct: 372 RPFMLHYNFPPYSVREVKRISGPSRRDIGHGGLSTRAIKEVLPSKEDFDYTIRIVSEILE 431
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VC LAL D GVPI ++G+AMG++ + D+ ++LSDI G ED
Sbjct: 432 SNGSSSMATVCSASLALMDGGVPITNPVSGIAMGLMAEGDKI------VVLSDILGDEDH 485
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +DGIT+ QMDIK+ +T +M+KAL QA+ GR HIL +ML
Sbjct: 486 MGDMDFKVAGTKDGITSVQMDIKISSLTREIMEKALAQARVGRLHILEKMLTTISESREE 545
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S +AP + +++ P+KI IIG GGK +++I ETG +D +D G VK++A +L E
Sbjct: 546 MSPYAPKVFTIQIHPDKIRDIIGPGGKVIRAIQAETGTR-VDVDDSGLVKVSAVNLEEGE 604
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ +I ++T VP VG +Y +K I +G FV I PG EGLCHIS+L + + K DV
Sbjct: 605 AALQMIKDITAVPEVGAVYEGTVVK-IMDFGAFVAILPGTEGLCHISQLDTKHVKKVSDV 663
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKD 856
VK G+ + VK++E+ G++RLSR+ALL E + ++ P G P +D
Sbjct: 664 VKEGEKIKVKVLELTKDGKIRLSRKALLEEENGKSGP---ENGAPQRD 708
>gi|427401540|ref|ZP_18892612.1| polyribonucleotide nucleotidyltransferase [Massilia timonae CCUG
45783]
gi|425719649|gb|EKU82581.1| polyribonucleotide nucleotidyltransferase [Massilia timonae CCUG
45783]
Length = 700
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/751 (40%), Positives = 442/751 (58%), Gaps = 64/751 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G + +ETG + RQASGAV V+ +T+I +V DFFPL V+Y
Sbjct: 5 VTKTFQYGQHTVTLETGEIARQASGAVVVSVEDTVILATVVAKKDAKPGQDFFPLTVDYM 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAG+ GGFFKREGR + E L RLIDRP+RP +G+ +E Q++ VLS +
Sbjct: 65 EKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD ++ A A+ ++ +P + I RVG ++I+NPTT E++ SQ+DL++AG++
Sbjct: 125 DPDIPSMIGASAALCIAGIPFAGPIGAARVGYANGQYILNPTTTELKTSQMDLVVAGTET 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSEE+++ AV G + ++ + + + LV GKP++ EL
Sbjct: 185 AVLMVESEAQQLSEEVMLGAVVFGHEQMKAVIDAIHDLVAEGGKPEVEWAPAPKNEELIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E+AG ++ Q + K R++ L SL +V+ LS G +
Sbjct: 245 RVGELAGAKIRDAYQTREKSARQQKLKSLSSEVMAELSAQGIAA---------------- 288
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D GDV +LF ++ +K +R +I++G R
Sbjct: 289 --------------DAGDVG---------NILF----------DMEAKVVRSQILDGEPR 315
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL---ESDD 506
DGR +RPIS R +LPR HGSALFTRGETQ+L V TLG + +Q+ID L +DD
Sbjct: 316 IDGRDTRTVRPISIRSSVLPRTHGSALFTRGETQALVVATLGTARDSQKIDALMGEYTDD 375
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
F + Y+ PP + GE GR+G P RRE+GHG LA+RAL LP+ DF Y++R+ S I
Sbjct: 376 ----FMMHYNMPPFATGETGRVGTPKRREVGHGRLAKRALVAALPNPEDFSYSVRLVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ + +F +L+DI G E
Sbjct: 432 TESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGGKFA------VLTDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG GITA QMDIK+ GIT +M+ AL QAKDGR+HILAEM K P
Sbjct: 486 DHLGDMDFKVAGTAQGITALQMDIKIQGITKEIMQVALAQAKDGRQHILAEMQKAMPTVK 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS AP + +++ PEKI +IG GG ++++ EETG + ID D+G V I + D ++
Sbjct: 546 TELSDFAPRLITIRINPEKIRDVIGKGGAVIRALTEETGTQ-IDITDEGIVTIASVDAAA 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++K I LT VG Y +K + +G V++ PG++GL HIS++++ +
Sbjct: 605 GQEAKRRIEELTASVEVGKTYDGTVLK-LLDFGAIVQVMPGKDGLLHISQIANERVNAVA 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLP 837
D +K G V VK++E +++G+L+LS +A P
Sbjct: 664 DYLKEGQQVRVKVLETDERGRLKLSMKAADP 694
>gi|421544131|ref|ZP_15990209.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM140]
gi|421546241|ref|ZP_15992290.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM183]
gi|421548510|ref|ZP_15994535.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2781]
gi|421552535|ref|ZP_15998509.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM576]
gi|421560934|ref|ZP_16006787.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2657]
gi|433464740|ref|ZP_20422225.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM422]
gi|433490108|ref|ZP_20447238.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM418]
gi|254669727|emb|CBA03893.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha153]
gi|402323976|gb|EJU59414.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM183]
gi|402324243|gb|EJU59679.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM140]
gi|402326171|gb|EJU61576.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2781]
gi|402331167|gb|EJU66508.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM576]
gi|402339414|gb|EJU74630.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM2657]
gi|432204227|gb|ELK60272.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM422]
gi|432228683|gb|ELK84381.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM418]
Length = 706
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|414160588|ref|ZP_11416854.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878108|gb|EKS25997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 701
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 448/744 (60%), Gaps = 55/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + +R + +ETG M +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWANRPLTIETGQMAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPADEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V ++++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGQYVINPTVEQKEQSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ ++ A+ G + E+K LV + +++D +K E
Sbjct: 188 MVEAGASEITEKEMLDAIFFGHE-------EIKRLVAF--QEEIIDYLKPEKSEF----- 233
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
IP + + +EEKV + E G +T D+
Sbjct: 234 ----------------IPVERD-AEVEEKVTALTQEKGLKEAIQTF-----------DKK 265
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E EE +D DE + + L +EV+ + ++ + +RR+I + R DG
Sbjct: 266 EREE-NIDAVRDEIIEIFEDEEDPENEALLAEVNA--ILNDLVKEEVRRQIADEKVRPDG 322
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E KRF
Sbjct: 323 RKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALSEYQLIDGLGPEVE-KRFM 381
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYT+R+ S + ESNGS
Sbjct: 382 HHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTQDFPYTVRIVSEVLESNGS 441
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA GDM
Sbjct: 442 SSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNY------TILTDIQGMEDALGDM 495
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +DGITA QMDIK+ G+T ++++AL+QA+ GR IL ML+ P LS +
Sbjct: 496 DFKVAGTKDGITAIQMDIKIDGLTREIIEEALEQARVGRLTILEHMLQTIDQPRPELSAY 555
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + + +++
Sbjct: 556 APKVETMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMINRARE 614
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II +T VG Y N ++K I YG FVE+ PG + L HIS++++ + K EDV+K+G
Sbjct: 615 IIEEITREAEVGQTY-NAKVKRIEKYGAFVELFPGTDALLHISQIANERINKVEDVLKLG 673
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D ++VK+ E++ KG++ S R LL
Sbjct: 674 DSIEVKVTEIDSKGRVNASHRVLL 697
>gi|421081058|ref|ZP_15541972.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
CFBP 3304]
gi|401704068|gb|EJS94277.1| Polyribonucleotide nucleotidyltransferase [Pectobacterium wasabiae
CFBP 3304]
Length = 706
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/769 (40%), Positives = 445/769 (57%), Gaps = 70/769 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V A FFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKSAKPGQSFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRFPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT E+++S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGVARVGYLNDQYVLNPTMDELKESRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
+ A+LM+E + LSE+ ++ AV G + + + + +LV GKPK + PE
Sbjct: 183 EGAVLMVESEAEVLSEDQMLGAVVFGHEQQQIVIQNINSLVAEAGKPKW----EWHAPEV 238
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + V+ ++ L +I K R ++ ++ V+ L ++DET
Sbjct: 239 NVSLEQRVQALSEARLGDAYRITEKQERYAQVNVIKSDVVAALQ-----AEDET------ 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ D++ + V +R R+
Sbjct: 288 --------------------------------------LNAGDIQEILGNVEKNVVRSRV 309
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L
Sbjct: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQNIDEL- 368
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P N+FPYT+RV
Sbjct: 369 TGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKANEFPYTVRVV 428
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI
Sbjct: 429 SEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGDNF------VVLSDIL 482
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M
Sbjct: 483 GDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMELAIS 542
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI + D
Sbjct: 543 TPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIASTD 601
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ + I +T VG +Y+ ++ I +G FV I G+EGL HIS+++ +
Sbjct: 602 GEKAKHAIRRIEEITAEIEVGRVYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
K D +++G V VK++EV+ +G++RLS + EA+ + P+ +
Sbjct: 661 KVTDYLQMGQEVPVKVLEVDRQGRVRLS----IKEANVQTQEAAAPSSE 705
>gi|428167930|gb|EKX36881.1| hypothetical protein GUITHDRAFT_89840 [Guillardia theta CCMP2712]
Length = 930
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 319/790 (40%), Positives = 464/790 (58%), Gaps = 88/790 (11%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVC---LADVPSEPSDFFPLNV 146
V +++ ++ +E+G +GR A+GAV ++I+Y++ C D DF PL+V
Sbjct: 152 VVMEVDIDGNKLRLESGEVGRLAAGAVMAKQRDSIVYSTACGDLNLDKEEVVEDFVPLSV 211
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQER SAAG+TSGG+ KR+GR D EVL R+IDR LRP GF E Q+LSWVL+YD
Sbjct: 212 HYQERSSAAGKTSGGYIKRDGRPSDEEVLTARIIDRTLRPLFPPGFCREVQVLSWVLAYD 271
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGL-VGDKFIVNPTTQEMEDSQLDLLLA 265
D LA+ ++ A+ S +P +AGV +G+ KF++NPT + ++ S+L+L ++
Sbjct: 272 PQANVDPLALISSSAALLASPIPFDTPVAGVCIGMDAKGKFVINPTREALKTSRLNLFVS 331
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKAL----VEMCGKPKMLDTIK 321
G++++++MIEG DFLS+E +++A+++G A+++I ++ +E + + + I+
Sbjct: 332 GTEESVMMIEGAADFLSDEQMVEAIELGMKAIKKICIGLRLFAAKTLEARKEVSLRELIR 391
Query: 322 LPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIV 381
P L++ EE GE +V + G SK + +
Sbjct: 392 QPDESLFEQFEEHLGEAMVSAIC------------------------TGSSSKRDVYTAI 427
Query: 382 ETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRR 441
+ EDE + + ++G+ D P ++ +DVK FK ++ +R+
Sbjct: 428 FGL------EDEAKRIFLEGKED-------------LPPGYA-IDVKTTFKRFAAEKMRQ 467
Query: 442 RIVEGGRRSDGRFADGIRPISSRCG-LLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
E +R DGR +RPIS R L P HGS+LFTRGETQ+LA +TLGD QR +
Sbjct: 468 FAKEKDQRVDGRTTRQVRPISVRMSPLAPAVHGSSLFTRGETQALATVTLGDSGSRQRSE 527
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
L+ + E KRFYLQYSFPPSSVGE GR+GA RREIGHG LAER L PV+PS++DFPYTI
Sbjct: 528 GLDGE-ESKRFYLQYSFPPSSVGECGRVGAIGRREIGHGNLAERGLLPVIPSEDDFPYTI 586
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGD------- 613
RVES ITES GSSSMASVCGGCLAL DAGVP+K +AGVAMG++L + G+
Sbjct: 587 RVESLITESCGSSSMASVCGGCLALFDAGVPLKRPVAGVAMGLLLPENLKRGNEENKEAI 646
Query: 614 -----GTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAK 668
+IL+DI G ED+ G MDFKV G+ GITAFQ+DIK G+++ ++K AL QA+
Sbjct: 647 MRKMEEEAVILTDILGLEDSLGTMDFKVCGDAKGITAFQLDIKCEGLSVNLLKSALAQAR 706
Query: 669 DGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEE---TG 725
+GR H+L MLK P L+ P + V I IIG GG ++S+IEE T
Sbjct: 707 EGRVHMLVHMLKAQAKPRPELAPSVPKLVRFSVPLVAIGKIIGPGGTTIRSLIEEFKLTN 766
Query: 726 VEAIDTEDDGTVKITAKDLSSLEK------------------SKAIISNLTMVPTVGDIY 767
++ ++T+ +G V ITA ++ K S A + P VG +Y
Sbjct: 767 IDIVETKSEGVVTITALSSDNIAKAEDKVRFLAQEANNFSPSSTATLKKKAADPEVGKVY 826
Query: 768 RNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVND-KG 826
++C I + P+G FVE+ PG+EGL H+SEL + E K+G+ +DVK++ + D KG
Sbjct: 827 KDCTIVGVHPFGCFVELWPGKEGLVHVSELDKERIDSVELRFKIGEKMDVKVLALRDQKG 886
Query: 827 QLRLSRRALL 836
++RLSR+A+L
Sbjct: 887 KIRLSRKAVL 896
>gi|418620428|ref|ZP_13183232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
gi|374822558|gb|EHR86578.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
Length = 698
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 455/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + +++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E+K LV E+ +H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIKRLVAF-------------QEEVVEHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + R K+L+ L+E VLT + +DE + + E +
Sbjct: 228 PVK-KEFIPVERDEELVQRVKSLTEEKGLKETVLTFDKQQ----RDENLDALKAEIATEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ D + E+++D +V + ++ + +RR I +
Sbjct: 283 VDEADPENELLID-------------------------EVYAILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P +FPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTEFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P +
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQPRS 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + IM +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 551 ELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQEMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II+ +T VG +Y + ++K I YG FVE+ PG++ L HIS++S + + K ED
Sbjct: 610 NRAREIINEITREAEVGQVY-DAKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S + L
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
Length = 698
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 455/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + +++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E+K LV E+ +H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIKRLVAF-------------QEEVVEHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + R K+L+ L+E VLT + +DE + + E +
Sbjct: 228 PVK-KEFIPVERDEELVQRVKSLTEEKGLKETVLTFDKQQ----RDENLDALKAEIATEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ D + E+++D +V + ++ + +RR I +
Sbjct: 283 VDEADPENELLID-------------------------EVYAILNDLIKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P +FPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTEFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P +
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDQPRS 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + IM +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 551 ELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQEMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II+ +T VG +Y + ++K I YG FVE+ PG++ L HIS++S + + K ED
Sbjct: 610 NRAREIINEITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S + L
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|386393055|ref|ZP_10077836.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. U5L]
gi|385733933|gb|EIG54131.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio sp. U5L]
Length = 764
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 323/752 (42%), Positives = 439/752 (58%), Gaps = 59/752 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ ++ G I++ETG + QA GAV + G T++ + C + +E FFPL V+Y
Sbjct: 7 PIRLETTVGGNTIILETGRLANQADGAVWIQCGGTVVLVTACTQAL-AEEKGFFPLVVDY 65
Query: 149 QERFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
QE AAGR G +F+RE GR + EVLVCRLIDRP RP KGF E QI++ VLS DG
Sbjct: 66 QEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSADG 125
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME-DSQLDLLLAG 266
PD LA+TAA A+ +S++P IAG RVG + +F++NPT + + L+L A
Sbjct: 126 QVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTFAA 185
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
S DA++M+EG F+SE+ML A++ G AV + + + + E GK K+ T P E
Sbjct: 186 SRDAVVMVEGGGRFVSEDMLADALEWGHKAVLPLLDLQEEMREKAGKLKIAFTPPAPNEE 245
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V + A L + IK+K+PRR A ++++ V+ ++E PD
Sbjct: 246 LEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMA--------------AVLEAFPD 291
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+ + M EV + + K LR I E
Sbjct: 292 ----------------------------QPTYKMKAGEV-----LEAMEKKLLRALIKET 318
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G R DGR +RPI + G+LPR HGS LF RGET++L V TLG Q+I+ L + +
Sbjct: 319 GIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLGSTGDEQKIETL-NGE 377
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
KRF L Y+FPP VGEV + PSRR+IGHG LAER++ PVLP +FP+T+RV S +
Sbjct: 378 TYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPGPEEFPFTMRVVSQV 437
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
ESNGSSSMASVCG LAL DAGVPIK +AG+AMG++ + D+F LIL+DI G E
Sbjct: 438 MESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDDF------LILTDILGDE 491
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DA GDMDFKVAG DGIT QMDIK+ GI VM++AL QAK+ R HIL M + P
Sbjct: 492 DAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALGQAKEARLHILGRMAEVLAAPR 551
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS AP + ++ + PEKI +IG GGK +K+I ETG +ID ED G + I A L S
Sbjct: 552 PELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGA-SIDIEDTGKISIFAPTLES 610
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+EK++A + VG Y+ ++K I GV VEI PG EGL H+S+L +
Sbjct: 611 MEKARARVEYYDQHADVGANYKG-KVKKIIDCGVIVEILPGLEGLVHVSQLDIERVESPF 669
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
DVVK+G ++VK++E G++RLSR+A++ E
Sbjct: 670 DVVKMGQELEVKVLEQEPSGRIRLSRKAVMNE 701
>gi|410460722|ref|ZP_11314396.1| polynucleotide phosphorylase/polyadenylase [Bacillus azotoformans
LMG 9581]
gi|409926776|gb|EKN63930.1| polynucleotide phosphorylase/polyadenylase [Bacillus azotoformans
LMG 9581]
Length = 705
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/743 (41%), Positives = 441/743 (59%), Gaps = 57/743 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ R++ VE G + +QA+GA + GET + ++ + P S FFPL VNY+ER A
Sbjct: 12 WAGRKLTVEIGQLAKQANGACLIRYGETAVLSTATASKEPKSLS-FFPLTVNYEERLYAV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D + A
Sbjct: 71 GKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMAA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+++S +P IAGV VG V ++FI+NPT ++ E S + L++AG+ DAI M+E
Sbjct: 131 MFGSSLALSVSNIPFEGPIAGVTVGRVDNEFIINPTVEQQEKSDIHLVVAGTKDAINMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+ EE +++A+ G + ++ + + +V GK KM + EL V +A
Sbjct: 191 AGAKEVPEETMLEAIMFGHEEIKRLIAFQEEIVSQVGKEKMEVELYEVDAELEAEVRTLA 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E++ K +Q+ K R A++ ++ V E E +P+
Sbjct: 251 EEDIKKAVQVAEKHAREDAINEVKASVKAKFEER------------EELPE--------- 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
G+VDE + KLV +EV RR I + R DGR
Sbjct: 290 --GTLGQVDE-------------------IMYKLVKEEV-----RRLITKEKIRPDGRKI 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D IRP+SS GLLPR HGS LFTRG+TQ+L++ TLG Q +D L +E KRF Y
Sbjct: 324 DEIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GIEESKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G I P RREIGHG L ERALEPV+PS+ DFPYTIR+ S + ESNGS+S
Sbjct: 383 NFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVSEVLESNGSTSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V D++ +L+DI G ED GDMDFK
Sbjct: 443 ASICGSTLAMMDAGVPIKAPVAGIAMGLVKSGDDY------TVLTDIQGMEDHLGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG G+TA QMDIK+ G++ ++++AL QA+ GR IL M++ P +LS++AP
Sbjct: 497 VAGTTKGVTALQMDIKIEGLSREILEEALTQAQKGRMQILEHMMQTISEPRTALSQYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I MK+ P+KI +IG GK++ IIEETGV+ ID E DGTV I + D+ +K+K II
Sbjct: 557 ILTMKINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFIASPDMEMNQKAKKIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVV +GD +
Sbjct: 616 DIVREVEVGQMYLG-KVKRIEKFGAFVEIFQGKDGLVHISELAEERVGKVEDVVSIGDEL 674
Query: 816 DVKLIEVNDKGQLRLSRRALLPE 838
VK+ E++ +G++ LSR+A+L E
Sbjct: 675 LVKVTEIDKQGRINLSRKAVLKE 697
>gi|386043642|ref|YP_005962447.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
10403S]
gi|404410629|ref|YP_006696217.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC5850]
gi|345536876|gb|AEO06316.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
10403S]
gi|404230455|emb|CBY51859.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC5850]
Length = 723
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 446/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKTAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|119898394|ref|YP_933607.1| polynucleotide phosphorylase/polyadenylase [Azoarcus sp. BH72]
gi|187470932|sp|A1K7B5.1|PNP_AZOSB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|119670807|emb|CAL94720.1| polyribonucleotide nucleotidyltransferase [Azoarcus sp. BH72]
Length = 699
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 308/757 (40%), Positives = 442/757 (58%), Gaps = 65/757 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
P + +G + +ETG + RQA GAV V +T++ +V A DFFPL
Sbjct: 1 MPTAIKKTFTYGAHTVTLETGEVARQAGGAVIVNVDDTVVLATVVAAKDAKPGQDFFPLT 60
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
V+Y E+F AAGR GGFFKREGR + E L RLIDRP+RP +GFY+E Q++ VLS
Sbjct: 61 VDYVEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEVQVIVTVLSL 120
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ D A+ AA A+++S +P I RVG ++++NPT ++++ S+L+L++A
Sbjct: 121 NPEVDADIPAMIAASAALSISGIPFDGPIGAARVGYADGQYLLNPTVEQLKTSKLNLVVA 180
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+ A+LM+E D LSE++++ AV G + ++ N + LVE+ GKP+ PP
Sbjct: 181 GTASAVLMVESEADELSEQVMLGAVVFGHEQMQAAINAINELVEVAGKPEW----NWQPP 236
Query: 326 E----LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIV 381
L V+E+A ++ + +I +K R + LS + ++ + L++ V
Sbjct: 237 AANDALVARVKELALADVEEAFRITSKQARTERLSEIRKRTIAALTDG-----------V 285
Query: 382 ETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRR 441
+ P SE ++K +F + + +R
Sbjct: 286 DNAP-------------------------------------SENEIKDIFFTLEAGTVRS 308
Query: 442 RIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDN 501
RI+ G R DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG + Q ID
Sbjct: 309 RILNGEPRIDGRDTRTVRPIDIRVGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDA 368
Query: 502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIR 561
+ + + +RF L Y+FPP S GE GR G RREIGHG LA+RAL +LP DF YTIR
Sbjct: 369 IAGEYK-ERFMLHYNFPPFSTGETGRFGVTKRREIGHGRLAKRALVAMLPKGEDFSYTIR 427
Query: 562 VESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSD 621
V S ITESNGSSSMASVCGG LAL DAGVP+K +AG+AMG++ D + F +L+D
Sbjct: 428 VVSEITESNGSSSMASVCGGSLALMDAGVPMKDHVAGIAMGLIKDGNRFA------VLTD 481
Query: 622 ITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKC 681
I G ED GDMDFKVAG E+G+TA QMDIK+ GIT +M+ AL QA +GR HIL +M
Sbjct: 482 ILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAGEGRLHILKQMKDA 541
Query: 682 SPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITA 741
+S+ AP + MK+ PEKI +IG GG ++++ EETG I+ EDDG++ I++
Sbjct: 542 LGVARGEVSEFAPRMLNMKINPEKIRDVIGKGGAVIRALQEETGT-VIEIEDDGSITISS 600
Query: 742 KDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNW 801
+K+KA I ++T VG +Y ++ + +G V I PGR+GL H+S++++
Sbjct: 601 VSAEGAQKAKARIEDITAEVEVGKVYEGTVVR-LLDFGAIVNILPGRDGLLHVSQIANER 659
Query: 802 LAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ D VK G V VK++E +++G++RLS +ALL E
Sbjct: 660 VNNVGDYVKEGQAVRVKVLETDERGKIRLSMKALLNE 696
>gi|393722522|ref|ZP_10342449.1| polynucleotide phosphorylase/polyadenylase [Sphingomonas sp. PAMC
26605]
Length = 793
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 303/754 (40%), Positives = 435/754 (57%), Gaps = 63/754 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V +G + + +ETG + RQA GAV T GET++ +V A E DFFPL V+YQE
Sbjct: 6 TVTTQWGGKTLTLETGRVARQADGAVMATLGETVVLCAVTAAKGVKEGQDFFPLTVHYQE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++SAAGR GGFFKRE + E L RLIDRP+RP +GFY+E ++ VLSYDG +
Sbjct: 66 KYSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEINVICQVLSYDGENE 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LA+ AA A+ +S VP I RVG + ++I+NPT ++ + +LDL++A + A
Sbjct: 126 PDVLAMVAASAALTISGVPFMGPIGAARVGYIDGEYILNPTVEQTKSGELDLVVAATGQA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKP--KMLDTIKLPPPELY 328
++M+E LSEE+++ AVQ A RE +N + L E K +M + L +
Sbjct: 186 VMMVESEAKELSEEVMLGAVQFAHKACREAANLIIDLAEQAAKDPWEMAEQADLTAAK-- 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ ++ G+++ ++ +K R L + K ++
Sbjct: 244 DKLRKLVGKDIAAAYKVTDKGQRSHLLYEVRAKAREAFADAA------------------ 285
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
P+ + + L +++ ++V R I++ G
Sbjct: 286 -----------------------PQDQLAAGKLVKKLEGEIV---------RGAILKDGT 313
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR IRPI + LPRAHGSALFTRGETQS+ TLG K Q ID L +
Sbjct: 314 RIDGRTTTQIRPIEAMVHFLPRAHGSALFTRGETQSICTTTLGTKDAEQMIDGL-TGLSY 372
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS ++FPYTIRV S ITE
Sbjct: 373 ENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKDEFPYTIRVLSDITE 432
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F +LSDI G ED
Sbjct: 433 SNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDFA------VLSDILGDEDH 486
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG E GIT QMDIK+ GIT +M+ AL QAK+GR HIL EM +
Sbjct: 487 LGDMDFKVAGTEAGITTMQMDIKIAGITEEIMRVALAQAKEGRAHILGEMARALDHTREE 546
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS HAP I + KI +IG+GGK ++ I+ TG + +D +D+G +K+++ D + ++
Sbjct: 547 LSAHAPRIETFTIDKTKIRDVIGTGGKVIREIVATTGAK-VDIDDEGVIKVSSSDTAQID 605
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I + VG +Y + ++ ++ +G FV G++GL H+SE+ + + K DV
Sbjct: 606 AAIKWIKGIVEEAEVGKVY-DGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVSDV 664
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
+ G V VK++E++ +G++RLS R + E AE
Sbjct: 665 LSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAE 698
>gi|381201149|ref|ZP_09908278.1| polynucleotide phosphorylase/polyadenylase [Sphingobium yanoikuyae
XLDN2-5]
Length = 771
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/751 (40%), Positives = 437/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I + + +ETG + RQA AV T GET++ +V A E DFFPL V+YQE+
Sbjct: 7 VSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ V+S+DG P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVMSFDGESEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I RVG ++ +NP+ E++ +LDL++A + +A+
Sbjct: 127 DIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATGNAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSE++++ AV +A +++ + + L E K L +
Sbjct: 187 MMVESEAKELSEDVMLGAVLFAHEASKKVVDAIIQLAEKAAKDPWEMAKGDDLGALKTKL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G ++ ++ +K R AL+ K +E+G
Sbjct: 247 KDLIGGDIAAAYKLTDKSARSNALNEARAKAKASFAEDGL-------------------- 286
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D + V+ G +KL K++ ++ +R I++ G+R D
Sbjct: 287 --DAQTVMAG-------------------------IKLT-KKLEAEIVRGAILKDGQRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + + F
Sbjct: 319 GRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLHYENF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLP+ ++FPYTIRV S ITESNG
Sbjct: 378 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKDEFPYTIRVLSDITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ +F ++SDI G ED GD
Sbjct: 438 SSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGSDFA------VISDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E GIT QMDIKV GIT + + AL+QAK+GR HIL EM K LS
Sbjct: 492 MDFKVAGTEAGITTMQMDIKVAGITQEIFETALRQAKEGRAHILGEMNKALSSTRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D + +E +K
Sbjct: 552 HAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGIIKISSSDTAQIEAAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG IY ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 611 KWILGIVEEAEVGKIY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVVSE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E E
Sbjct: 670 GQEVKVKVLEIDPRGKVRLSMRVVDQETGEE 700
>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MW2]
gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|417653250|ref|ZP_12302984.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
gi|417797215|ref|ZP_12444413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21305]
gi|417901705|ref|ZP_12545581.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21266]
gi|418312576|ref|ZP_12924085.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21334]
gi|418317160|ref|ZP_12928584.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21340]
gi|418321844|ref|ZP_12933183.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875210|ref|ZP_13429470.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934177|ref|ZP_13488000.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988096|ref|ZP_13535769.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741791|ref|ZP_21723748.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/314250]
gi|81649409|sp|Q6G9T9.1|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81762564|sp|Q8NWY9.1|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MW2]
gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSSA476]
gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
gi|334267263|gb|EGL85727.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21305]
gi|341845544|gb|EGS86746.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21266]
gi|365224459|gb|EHM65724.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VCU006]
gi|365238221|gb|EHM79058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21334]
gi|365239532|gb|EHM80334.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21340]
gi|377719884|gb|EHT44054.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770270|gb|EHT94032.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770920|gb|EHT94679.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547429|gb|ELY15698.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/314250]
Length = 698
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 453/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPVERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|259417548|ref|ZP_05741467.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
TrichCH4B]
gi|259346454|gb|EEW58268.1| polyribonucleotide nucleotidyltransferase [Silicibacter sp.
TrichCH4B]
Length = 712
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 319/758 (42%), Positives = 439/758 (57%), Gaps = 73/758 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQE++
Sbjct: 9 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTYAREQKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S VP IAG RVG ++I+NPT +M+D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIAGARVGYEDGEYILNPTVDDMQDLRLNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E L+EE ++ AV + ++ + + + +L E K + PP+
Sbjct: 189 KDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVIDLIVSLAEETAK----EPFDFTPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ E++ I +K R A+ + +E E I
Sbjct: 245 SDLYAAVKAAGEEKMRAAYAISDKQERVAAVGAAKE---------------------EII 283
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L E++ ED ++ K++ S LR +V
Sbjct: 284 ASLTEEQREDG------------------------------NLSSALKKLESVVLRGDVV 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ GRR DGR D +R I + GLLPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 314 KNGRRIDGRALDQVRAIECQTGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NFK-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL+ DG+ IL+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED-----DGSYGILTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIKV GIT +MK AL QAK GR HIL EM K S
Sbjct: 488 DEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKNALAQAKAGRLHILGEMAK-SLT 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
++ S+HAP I M+V +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 547 EASEFSQHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASANG 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+++K+ +I + P G +Y +K I +G FV R+GL H+S++ + L
Sbjct: 606 EAIQKAYDMIYAIVAEPEEGAVYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DV+K G V VKL+ +D+G++RLS + + E E
Sbjct: 665 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEE 702
>gi|373853491|ref|ZP_09596290.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
gi|372473018|gb|EHP33029.1| Polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV5]
Length = 751
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 305/751 (40%), Positives = 437/751 (58%), Gaps = 54/751 (7%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
I TG M + A+GAVTVT GET ++ S A DFFPL V+Y+E++SAAGR G
Sbjct: 14 IKFTTGDMAKFANGAVTVTVGETNVFVSATAAQTMRPGQDFFPLTVDYREKYSAAGRFPG 73
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
G+FKREG+ + E+L RL DRP RP +GF +E QI+ +LS D +H D V A
Sbjct: 74 GYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGLLLSADQIHEADIAMVNGAS 133
Query: 221 IAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDF 280
A+A+S++P + I VRV L+ +F+ NPT ++M S LDL+ G++ +LMIEG D
Sbjct: 134 AALAISDIPWNGPIGAVRVALIDGQFVANPTIEQMFSSTLDLIYVGNEKDMLMIEGSADQ 193
Query: 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELV 340
L EE I+A++ A++ I ++ L GKPK + + + PE +E + ++ V
Sbjct: 194 LPEERFIEALEFAHQAIQPIIATIRDLAARAGKPKAVFPLVVAKPEARAIIERVVPQQRV 253
Query: 341 KVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVD 400
+A+ E++V + + ++ E+ +
Sbjct: 254 S-----------EAIFGFEKQV-----------RGANINALK----------EEARAALL 281
Query: 401 GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRP 460
E+ EG+ F++ D+ +VF+++ K R ++E G R+D R A +RP
Sbjct: 282 AELGEGN--------------FADHDISIVFEDLQYKAYRATVLERGVRADKRDAKSLRP 327
Query: 461 ISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520
I+S G+LPR HGSALF RG+TQ L TLG + AQ +D L K F L Y+FPP
Sbjct: 328 IASEVGVLPRVHGSALFQRGDTQGLVTATLGPTKEAQDMDGLTGGATSKSFILHYNFPPY 387
Query: 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCG 580
SVGE GR P RREIGHG LAER+L PVLP ++ FPYTIR+ S I SNGS+SMAS+CG
Sbjct: 388 SVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYTIRLVSDIMASNGSTSMASICG 447
Query: 581 GCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 640
GCLAL DAGVPI +AG++ G++ G + ++DI G ED GDMDFK+AG
Sbjct: 448 GCLALMDAGVPIIAPVAGISCGLMTSNKPDGSIDNWVTITDILGEEDHFGDMDFKLAGTT 507
Query: 641 DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMK 700
GIT FQ+D+K+ G+ + + + A+ QA+D R IL ML P P +LS +AP I ++
Sbjct: 508 KGITGFQLDLKINGLPIEIARTAIFQARDARIEILKLMLSAIPAPRKTLSAYAPRIQTIQ 567
Query: 701 VKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDD--GTVKITAKDLSSLEKSKAIISNLT 758
+ PEKI L+IG GGK ++ I+E TG + ID DD G V I + + S+ ++ + I L
Sbjct: 568 INPEKIGLLIGPGGKTIRRIVETTGAQ-IDISDDDSGKVFIYSNNADSMNRAISEIDALC 626
Query: 759 MVPT---VGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+ VG IY + + +G FVE PG+EGLCHISEL+ + + EDVVKVGD +
Sbjct: 627 GGGSQIEVGKIYTG-RVSGVKEFGAFVECLPGKEGLCHISELADFRVRRTEDVVKVGDSI 685
Query: 816 DVKLIEVNDK-GQLRLSRRALLPEADAENPP 845
VK I ++++ ++RLSRRA + E + + P
Sbjct: 686 TVKCIGIDERTNKVRLSRRAAMKELEEQQQP 716
>gi|338741569|ref|YP_004678531.1| polynucleotide phosphorylase [Hyphomicrobium sp. MC1]
gi|337762132|emb|CCB67967.1| polynucleotide phosphorylase/polyadenylase [Hyphomicrobium sp. MC1]
Length = 732
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 321/759 (42%), Positives = 447/759 (58%), Gaps = 67/759 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R++ +ETGH RQA AV G+T + +V A DFFPL VNYQER
Sbjct: 7 VEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSAKPGIDFFPLTVNYQER 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP + GF +ETQ++ V+S+D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVDGFKNETQVVVTVMSHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L + AA A+ LS +P I RVGL+G +F++NP EM ++ LDL++AG+ DA+
Sbjct: 127 DILGMVAASAALTLSGLPFLGPIGAARVGLIGGEFVLNPMIDEMAETALDLVVAGTTDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK-H 330
+M+E L E +++AV G ++ + + L E K IK+ Y
Sbjct: 187 MMVESEAKELPESQMLEAVMFGHKHMQPVIQAIIKLAEKAAKEPW--DIKIADKAKYAAD 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V++IA +L + K K R+ +S ++ + T GI IP
Sbjct: 245 VKKIAEAKLKEAFSTKEKGKRQDLVSEAKKAI--------------TEGI--AIPA---- 284
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+D +E+V++ GD FK + +R +++ RR
Sbjct: 285 DDPNEKVLL------GDA----------------------FKSLEMDIMRGDVLKTKRRI 316
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID+LE + +R
Sbjct: 317 DGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGEDEQFIDSLEGTKK-ER 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR+G+P RREIGHG LA RA+ P+LPS +FPYT+RV S ITESN
Sbjct: 376 FLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQEEFPYTLRVVSEITESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+K +AG+AMG++ + D+F ++LSDI G ED G
Sbjct: 436 GSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDDF------VVLSDILGDEDHLG 489
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG + G+T+ QMDIK+ GIT +M+ AL+QA +GR HIL EM K + L
Sbjct: 490 DMDFKVAGTDKGVTSLQMDIKITGITEEIMRVALEQAHEGRIHILGEMSKAITGARSELG 549
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +K+ +KI +IGSGG ++ I+ E+G + ID EDDGTVKI + + S+EK+
Sbjct: 550 EFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAK-IDIEDDGTVKIASANRESIEKA 608
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
I +T P VG IY+ +K + +G FV ++GL HIS+L+ +VVK
Sbjct: 609 LDRIRGITSEPEVGHIYKGKVVK-VMEFGAFVNFFGAKDGLVHISQLAQGRPETVGEVVK 667
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL-------LPEADAE 842
G V VKL+ +D+G+ RLS + + +P A+ E
Sbjct: 668 EGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEIPRAEGE 706
>gi|254493246|ref|ZP_05106417.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
1291]
gi|268598511|ref|ZP_06132678.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|268603169|ref|ZP_06137336.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|268683877|ref|ZP_06150739.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
gi|226512286|gb|EEH61631.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
1291]
gi|268582642|gb|EEZ47318.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
MS11]
gi|268587300|gb|EEZ51976.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID1]
gi|268624161|gb|EEZ56561.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-92-679]
Length = 707
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 439/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T+++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKISQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|372275452|ref|ZP_09511488.1| polynucleotide phosphorylase/polyadenylase [Pantoea sp. SL1_M5]
gi|390436777|ref|ZP_10225315.1| polynucleotide phosphorylase/polyadenylase [Pantoea agglomerans
IG1]
Length = 712
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/773 (40%), Positives = 442/773 (57%), Gaps = 66/773 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+ALS +P + I RVG + D++++NPT E++ S+LDL++AG+
Sbjct: 123 QVHPDIVAMIGASAALALSGLPFNGPIGSARVGYINDQYVLNPTADELKQSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E + LSEE ++ AV G D + + + ALV GKP+ + L
Sbjct: 183 QNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A + +I +K R + V KDET+ + L
Sbjct: 243 ISRVAALAEARISDAYRITDKQERYTQVG---------------VIKDETIAAL-----L 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE D + D + + +R RI+ G
Sbjct: 283 AEDETLDGSEIGD-----------------------------IVHSLEKTVVRTRILNGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGS+LFTRGETQ+L TLG + AQ +D L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P DFPYTIRV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPYTIRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M++AL QA+ R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQARGARLHILGVMEQAISTPRT 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI A D L
Sbjct: 547 EISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATD--GL 603
Query: 748 EKSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +AI I +T VG +Y + ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 604 KAKEAIRRIEEITAEIEVGRVY-SGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAA 858
D +++G V VK++EV+ +G++RLS + EA P + T DAA
Sbjct: 663 TDYLQMGQEVPVKVMEVDRQGRVRLS----IKEATESKPQAEEAVAVTTPDAA 711
>gi|126740759|ref|ZP_01756444.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
SK209-2-6]
gi|126718055|gb|EBA14772.1| polynucleotide phosphorylase/polyadenylase [Roseobacter sp.
SK209-2-6]
Length = 705
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 319/763 (41%), Positives = 437/763 (57%), Gaps = 73/763 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G+V T GET + +V A DFFPL V+YQE++
Sbjct: 1 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ LS P IAG RVG ++++NPT +M+D +LDL++AG+
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAGARVGFEDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV+ + ++ + + + +L E + + P+
Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHEQIQPVVDLIISLAEEAAN----EPFEFAAPDY 236
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY+ V+ E+ I +K R A+++ E + LSE
Sbjct: 237 SDLYEAVKAAGETEMRAAFAISDKQERTAAVAAARETIKGALSE---------------- 280
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+ LED ++ K++ + LR +V
Sbjct: 281 -EQLED----------------------------------ANLGSALKKLEAGILRGDVV 305
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G+R DGR D IR I S GLLPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 306 KTGKRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHG 365
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGEVGR+G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 366 NFK-SNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 424
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ ILSDI G
Sbjct: 425 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGSYAILSDILG 479
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIKV GIT +M+KAL QAKDGR HIL EM K
Sbjct: 480 DEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILGEMAKALTE 539
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
S S HAP I M + +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 540 ASE-FSVHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASANG 597
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+++K+ +I + P G IY +K I +G FV R+GL H+S++ + L
Sbjct: 598 EAIQKAYDMIHAIVAEPEEGAIYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNH 656
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
DV+K G V VKL+ +D+G++RLS + + E E P K
Sbjct: 657 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEIAPEK 699
>gi|294011612|ref|YP_003545072.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
UT26S]
gi|292674942|dbj|BAI96460.1| polyribonucleotide nucleotidyltransferase [Sphingobium japonicum
UT26S]
Length = 771
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/751 (40%), Positives = 439/751 (58%), Gaps = 57/751 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I G + + +ETG + RQA AV T GET++ +V A E DFFPL V+YQE+
Sbjct: 7 VSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLTVHYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+SAAGR GGFFKRE + E LV RLIDRP+RP +GFY+E +++ VLS+DG P
Sbjct: 67 YSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSFDGESEP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I RVG ++ +NP+ E++ +LDL++A + +A+
Sbjct: 127 DIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVAATGNAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E LSE++++ AV +A +++ N + L E K +L K +
Sbjct: 187 MMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLDDLKKKL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G+++ ++ +K R A+++ +K +E G ++ GI T
Sbjct: 247 KKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGLDAQSVMAGIKLT-------- 298
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
K++ ++ +R I++ G+R D
Sbjct: 299 ----------------------------------------KKLEAEIVRTAILKEGKRID 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI + G LPR HGSALFTRGETQ++ TLG K Q ID L + + F
Sbjct: 319 GRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDAEQMIDGL-TGLHYESF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR GAP RRE+GHG LA RAL PVLPS +FPYTIRV S ITESNG
Sbjct: 378 MLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKEEFPYTIRVLSDITESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG L++ DAGVP+K ++G+AMG++L+ EF ++SDI G ED GD
Sbjct: 438 SSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFA------VISDILGDEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E GIT QMDIKV GIT + + AL+QAK+GR HIL EM K LS
Sbjct: 492 MDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSKALSSTRTELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP I +++ KI +IG+GGK ++ I+ ETG + +D +D+G +KI++ D++ +E +K
Sbjct: 552 HAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAK-VDIDDEGIIKISSSDINQIEAAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I + VG IY ++ +I +G FV G++GL H+SE+ + + K DVV
Sbjct: 611 KWILGIVEEAEVGKIY-TGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEKPTDVVSE 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VK++E++ +G++RLS R + E E
Sbjct: 670 GQEVKVKVLEIDPRGKVRLSMRVVDQETGEE 700
>gi|194098066|ref|YP_002001114.1| polynucleotide phosphorylase [Neisseria gonorrhoeae NCCP11945]
gi|240013649|ref|ZP_04720562.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
DGI18]
gi|385335256|ref|YP_005889203.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226702668|sp|B4RK29.1|PNP_NEIG2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193933356|gb|ACF29180.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|317163799|gb|ADV07340.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 706
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 439/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T+++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKRLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKISQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|46907557|ref|YP_013946.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
serotype 4b str. F2365]
gi|47094124|ref|ZP_00231847.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 4b H7858]
gi|226223932|ref|YP_002758039.1| polynucleotide phosphorylase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|405752548|ref|YP_006676013.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2378]
gi|406704102|ref|YP_006754456.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
L312]
gi|424714205|ref|YP_007014920.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
serotype 4b str. LL195]
gi|81403374|sp|Q71ZZ1.1|PNP_LISMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|259534135|sp|C1L2N7.1|PNP_LISMC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|46880825|gb|AAT04123.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
serotype 4b str. F2365]
gi|47017509|gb|EAL08319.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
str. 4b H7858]
gi|225876394|emb|CAS05103.1| polynucleotide phosphorylase (PNPase) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|404221748|emb|CBY73111.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
SLCC2378]
gi|406361132|emb|CBY67405.1| polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
L312]
gi|424013389|emb|CCO63929.1| Polyribonucleotide nucleotidyltransferase [Listeria monocytogenes
serotype 4b str. LL195]
Length = 723
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 447/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ SEV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILSEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|59800780|ref|YP_207492.1| polynucleotide phosphorylase [Neisseria gonorrhoeae FA 1090]
gi|240120719|ref|ZP_04733681.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID24-1]
gi|268594384|ref|ZP_06128551.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
35/02]
gi|268596381|ref|ZP_06130548.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
FA19]
gi|268600863|ref|ZP_06135030.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|268686120|ref|ZP_06152982.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|291044327|ref|ZP_06570036.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
DGI2]
gi|293399517|ref|ZP_06643670.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
F62]
gi|75356328|sp|Q5F9Q7.1|PNP_NEIG1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|59717675|gb|AAW89080.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
gonorrhoeae FA 1090]
gi|268547773|gb|EEZ43191.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
35/02]
gi|268550169|gb|EEZ45188.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
FA19]
gi|268584994|gb|EEZ49670.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID18]
gi|268626404|gb|EEZ58804.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
SK-93-1035]
gi|291011221|gb|EFE03217.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
DGI2]
gi|291610086|gb|EFF39208.1| polyribonucleotide nucleotidyltransferase [Neisseria gonorrhoeae
F62]
Length = 707
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 439/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T+++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETDT----------------LAANEIKGIFKRLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKISQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|326389429|ref|ZP_08210996.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|392940960|ref|ZP_10306604.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
siderophilus SR4]
gi|325994434|gb|EGD52859.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
ethanolicus JW 200]
gi|392292710|gb|EIW01154.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
siderophilus SR4]
Length = 700
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/753 (41%), Positives = 441/753 (58%), Gaps = 59/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R++LV+ G + +QA+GA V G+T++ + C + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLLVQIGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D
Sbjct: 65 RLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V VGLV +FI+NP ++ E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFIINPNHEQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE ++ A+ + +++I ++ +V+ G PK + +L +
Sbjct: 185 IVMVEAGAKEIPEETMLDAIMYAHEYIKQIVEFIEGIVKEVGVPKSEVILHEIDKDLEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A E++ L+ K R L +E++VL E PD L D
Sbjct: 245 VRAYATEKIYNALRTAEKKERNDNLDKVEQEVLEHFKEE--------------YPDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V + + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYNIMKEQMRKMITEERIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q +D + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGI-GDEEAKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG LAERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + D +L+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVS------VLTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++K AL++A+ GR +IL +ML+ P LS
Sbjct: 488 DMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARRGRLYILNKMLEVIKEPRKQLS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M V PEKI IIG GGK + II ETGV+ ID E+DG + ITA DL S E++
Sbjct: 548 VYAPRVIRMVVDPEKIREIIGPGGKTISKIIAETGVK-IDIEEDGRLYITASDLRSGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T VG+IY ++ I P+G FVEIAPG+EGL HIS+LS + K EDVVK
Sbjct: 607 KQMIEAITKDIAVGEIYLG-KVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VGD + VK+ +++ G++ LSR+ LP+ + E
Sbjct: 666 VGDDILVKVTDIDKLGRISLSRKDALPDEEEEE 698
>gi|365873908|ref|ZP_09413441.1| LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase
[Thermanaerovibrio velox DSM 12556]
gi|363983995|gb|EHM10202.1| LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase
[Thermanaerovibrio velox DSM 12556]
Length = 753
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/764 (39%), Positives = 455/764 (59%), Gaps = 75/764 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + ETG M +QA+G+V G+T++ + +++ P E DFFPL V+Y+ERF
Sbjct: 6 EMEIGGRVLSFETGRMAKQANGSVLARYGDTVVLVTSVMSEKPREGLDFFPLLVDYEERF 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ GGF KREGR + +L R++DR +R + ++ +++ VLS D + P+
Sbjct: 66 YSAGKIPGGFIKREGRPSETAILSGRMVDRSIRSLFPEHMRNDVHVVATVLSVDQQNPPN 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ AA A+++S++P I VR+G + + +VNPT +M S LDLL+AG D I
Sbjct: 126 VLAINAASAALSISDIPWDGPIGAVRIGFIDGELVVNPTESQMSVSALDLLVAGHDGGIT 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELY 328
M+E + +SE++L+ A+++ ++ I ++ L E GKPK +++P P E+
Sbjct: 186 MVEAGANEVSEDLLVDAMELAHQEIKRIVAFIRELREQVGKPK----VEIPEPLRIEEID 241
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
+ +E+ E++ + +QI K+ R+ AL+ L ++ +
Sbjct: 242 RWIEQELREDIYRAVQIHGKVERKDALAELTKRAVE------------------------ 277
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
H +P + + S V +E K LRR +++ G+
Sbjct: 278 --------------------HFEPVYPDCSAYVSS------VVEEWVKKGLRRLLLDEGK 311
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLG----DKQMAQRIDNLES 504
R+DGR D +RPI+ G+LP+ HGSALFTRGETQ+LAV TLG D Q+ +D L+
Sbjct: 312 RADGRAMDQLRPITCEVGILPKVHGSALFTRGETQALAVTTLGMMGEDDQI---LDGLKH 368
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
D+ KRF L Y+FPP SVGEV + P RREIGHG LAERAL P+LPS+ DFPY +RV S
Sbjct: 369 DEPAKRFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALRPLLPSEEDFPYVVRVVS 428
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
I ESNGSSSMASVCGG L++ DAGVPIK ++AGVAMG+V D IL+DI G
Sbjct: 429 DILESNGSSSMASVCGGSLSMMDAGVPIKKAVAGVAMGLVTDGSRV------CILTDIQG 482
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG +DG+TA QMD K GGIT ++++AL QA+DGR IL M
Sbjct: 483 LEDHYGDMDFKVAGTKDGVTALQMDNKAGGITREILQRALGQARDGRMRILDIMDSAIKS 542
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P + +S +AP I + + P+KI +IG GGK ++SII +TG + +D +DDG V + A+
Sbjct: 543 PRDQISPNAPRIMTISIDPDKIRDVIGPGGKTIRSIIAQTGAK-VDVQDDGRVCVAAQTE 601
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+ + +IS+LT G+I+ ++ + +G F+E+ PG+EGL H+SE+S++ + K
Sbjct: 602 EAASHAIKLISDLTREVQAGEIFVG-KVTRMLGFGYFIEVLPGKEGLLHVSEISTHHIPK 660
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD--AENPPV 846
ED +GD V V + E++D ++ LSRR L+ D A++P +
Sbjct: 661 IEDAFSIGDEVLVVVREIDDMNRINLSRRRLIERYDQLAKDPAL 704
>gi|297530556|ref|YP_003671831.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
gi|297253808|gb|ADI27254.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. C56-T3]
Length = 723
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 319/756 (42%), Positives = 457/756 (60%), Gaps = 60/756 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R ++VETG + +QA+GAV V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDVAGRPLIVETGELAKQANGAVLVRYGDTVVL-STATASREAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +LV RLIDRP+RP +GF +E Q++S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V +F++NPT ++ME S L L++AG+ DAI M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + V+ + + + GK KM + P P L + +
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ + +Q+ K+ R A+ ++ G ++K E E+
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVK---------AGVIAK-------------YEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE K ++ +L KLV +EV RR I R DGR
Sbjct: 287 DEE----------------KLKQVQEILH-----KLVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L+ + E KRF
Sbjct: 321 KVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLE-ESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++AL QA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I IM + P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ D ++ +K+K I
Sbjct: 554 PKILIMHINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVDEAANQKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG +Y ++K I +G FVE+ G++GL HISEL+ + K EDVV +GD
Sbjct: 613 IEDIVREVEVGQVYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
+ VK+ E++ +G++ LSR+A+L DA N +LP
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL--RDARNIGGELP 705
>gi|308189117|ref|YP_003933248.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
gi|308059627|gb|ADO11799.1| polyribonucleotide nucleotidyltransferase [Pantoea vagans C9-1]
Length = 740
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/772 (40%), Positives = 441/772 (57%), Gaps = 66/772 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 32 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVN 91
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 92 YQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNP 151
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+ALS +P + I RVG + D++++NPT E++ S+LDL++AG+
Sbjct: 152 QVHPDIVAMIGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGT 211
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E + LSEE ++ AV G D + + + ALV GKP+ + L
Sbjct: 212 QNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTPL 271
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A + +I +K R + V KDET+ + L
Sbjct: 272 ISRVAALAEARISDAYRITDKQERYAQVG---------------VIKDETIAAL-----L 311
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE D + D + + +R RI+ G
Sbjct: 312 AEDETLDGSEIGD-----------------------------IVHSLEKTVVRTRILNGE 342
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGS+LFTRGETQ+L TLG + AQ +D L +
Sbjct: 343 PRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGE-R 401
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P DFPYT+RV S IT
Sbjct: 402 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPYTVRVVSEIT 461
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 462 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 515
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M++AL QAK R HIL M + P
Sbjct: 516 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAISTPRT 575
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI A D L
Sbjct: 576 EISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATD--GL 632
Query: 748 EKSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +AI I +T VG IY + ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 633 KAKEAIRRIEEITAEIEVGRIY-SGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 691
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDA 857
D +++G V VK++EV+ +G++RLS + EA P + T DA
Sbjct: 692 TDYLQMGQEVPVKVMEVDRQGRVRLS----IKEATESKPQTEEAAAVTTPDA 739
>gi|242242557|ref|ZP_04797002.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis W23144]
gi|416124326|ref|ZP_11595322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis FRI909]
gi|420174958|ref|ZP_14681404.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM061]
gi|420176885|ref|ZP_14683279.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM057]
gi|420179479|ref|ZP_14685770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM053]
gi|420199057|ref|ZP_14704741.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM031]
gi|242233984|gb|EES36296.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis W23144]
gi|319401436|gb|EFV89646.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis FRI909]
gi|394244491|gb|EJD89833.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM061]
gi|394251792|gb|EJD96868.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM057]
gi|394253683|gb|EJD98679.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM053]
gi|394272743|gb|EJE17193.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM031]
Length = 701
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 315/747 (42%), Positives = 450/747 (60%), Gaps = 63/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ P + + VE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF--QQEIIDHIQ-PIKQEFVPVE 237
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTI----LSENGYVSKDETVGIVETIPDLL 388
E+LV+ K+ R L+E VLT EN V K+E VG L
Sbjct: 238 R--DEDLVE------KVKRLTEDKGLKETVLTFDKQQRDENLDVLKEEVVG------HFL 283
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
++ED + E +V +V + ++ + +RR I +
Sbjct: 284 DEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIADEKI 318
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 319 RPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE- 377
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S + E
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSEVLE 437
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 438 SNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMEDA 491
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 492 LGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQPREE 551
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 552 LSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMIN 610
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K EDV
Sbjct: 611 RAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVEDV 669
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+K+GD ++VK+ E++ +G++ S + L
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|108810762|ref|YP_646529.1| polynucleotide phosphorylase/polyadenylase [Yersinia pestis
Nepal516]
gi|108774410|gb|ABG16929.1| polyribonucleotide nucleotidyltransferase [Yersinia pestis
Nepal516]
Length = 731
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 431/744 (57%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 30 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 89
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 90 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 149
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A ++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 150 INPDIVALIGASAVLSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 209
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSEE ++ AV G + + + + ALV GKPK D P E L
Sbjct: 210 GAVLMVESEADILSEEQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWQAEPVNEAL 268
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 269 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 322
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L V +R R++ G
Sbjct: 323 L-------------------------------------------ASVEKNVVRSRVLRGE 339
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 340 PRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 398
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYTIRV S IT
Sbjct: 399 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSASEFPYTIRVVSEIT 458
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 459 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNF------VVLSDILGDED 512
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DG+TA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 513 HLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 572
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 573 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 631
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 632 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 690
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 691 YLQMGQDVPVKVMEVDRQGRIRLS 714
>gi|386830809|ref|YP_006237463.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|417797981|ref|ZP_12445167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21310]
gi|418656582|ref|ZP_13218387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-105]
gi|334277103|gb|EGL95342.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21310]
gi|375033233|gb|EHS26437.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-105]
gi|385196201|emb|CCG15822.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
Length = 698
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LVE ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVEF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|385342239|ref|YP_005896110.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240149]
gi|385856914|ref|YP_005903426.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NZ-05/33]
gi|416188235|ref|ZP_11614704.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M0579]
gi|325136018|gb|EGC58628.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M0579]
gi|325202445|gb|ADY97899.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240149]
gi|325207803|gb|ADZ03255.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NZ-05/33]
Length = 706
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|254466440|ref|ZP_05079851.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
gi|206687348|gb|EDZ47830.1| 3' exoribonuclease family, domain 2 [Rhodobacterales bacterium Y4I]
Length = 703
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/755 (41%), Positives = 441/755 (58%), Gaps = 67/755 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G+V T GET + +V A DFFPL V+YQE++
Sbjct: 1 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 60
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 120
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S P IAG RVG V ++++NPT +M+D +LDL++AG+
Sbjct: 121 VAMIAASAALTISGAPFMGPIAGARVGFVDGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A++M+E L+E ++ AV + ++ + + + +L E K + D EL
Sbjct: 181 KNAVMMVESEAYELTEAEMLGAVNFAHEQIQPVIDLIISLAEETAK-EPFDFQAPDYSEL 239
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
Y+ V+ E++ I +K R A+++ E + L+E +
Sbjct: 240 YEAVKAAGEEQMRAAFAITDKQERTAAVAAARETIKAALTE-----------------EQ 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
LED ++ K++ + LR +V+GG
Sbjct: 283 LED----------------------------------ANLGSAMKKLEAGILRGDVVKGG 308
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR +R I + GLLPR HGSALFTRGETQ L V TLG Q ID L + +
Sbjct: 309 KRIDGRDTTTVRQIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFK 368
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S IT
Sbjct: 369 -SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSEIT 427
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ +L+DI G ED
Sbjct: 428 ESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGSYAVLTDILGDED 482
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E+GIT+ QMDIKV GIT +M+KAL QAKDGR HIL EM K +N
Sbjct: 483 HLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRLHILNEMGKAL-SETN 541
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + + ++
Sbjct: 542 EFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASPNGDAI 600
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P G +Y +K I +G FV R+GL H+S++ + L D
Sbjct: 601 QKAYDMIYSIVAEPEEGQVYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 659
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V+K G V VKL+ +D+G++RLS + + E E
Sbjct: 660 VLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEE 694
>gi|411001050|gb|AFV98779.1| polyribonucleotide nucleotidyltransferase [Candidatus Snodgrassella
sp. TA1_30860]
Length = 728
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/761 (41%), Positives = 443/761 (58%), Gaps = 74/761 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+GAV ++ G+T++ +V A DFFPL V+Y ER AA
Sbjct: 32 YGNQTVTLETGEIARQAAGAVKISMGDTVVLVAVTAAKEVKPGQDFFPLTVDYLERTYAA 91
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFY++ QI++ V+S D D A
Sbjct: 92 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIVAMVVSVDPEIDSDIPA 151
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ L+ VP + I RVG V ++++NPT ++ SQLDL++AG++ A+LM+E
Sbjct: 152 MLGASAALLLTGVPFAGPIGAARVGYVNGEYVLNPTKTQLAQSQLDLVVAGTEKAVLMVE 211
Query: 276 GYCDFLSEEMLIQAVQVGQD-------AVREISNEVKALVEMCGKPKMLD-TIKLPPPEL 327
D LSEE ++ AV G + A+ E ++EV P+M D + L
Sbjct: 212 SEADVLSEETMLGAVVFGHEQMQAAIRAINEFADEVN--------PEMWDWQAPVADESL 263
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+AG + + +IK K R L V E I E L
Sbjct: 264 IAKVRELAGATIDEAFKIKQKQARTAKLDEAWAAV-------------EAALITEETDTL 310
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L ++ ++ +FK++ + +R +I+EG
Sbjct: 311 LANQ-----------------------------------IRGIFKDLEKEVVRGQILEGQ 335
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI+ R G+LPR HGSALFTRGETQSLA TLG ++ Q ID L S +
Sbjct: 336 PRIDGRDTRTVRPINIRTGVLPRTHGSALFTRGETQSLATATLGTQRDEQIIDAL-SGEY 394
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S IT
Sbjct: 395 TDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPDVEDFSYTMRVVSEIT 454
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVC GCL+L +AGVP+K +AG+AMG++LD ++F +L+DI G ED
Sbjct: 455 ESNGSSSMASVCAGCLSLLNAGVPLKSHVAGIAMGLILDGNKFA------VLTDILGDED 508
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK+ R +IL +M + P
Sbjct: 509 HLGDMDFKVAGTTTGVTALQMDIKIQGITKEIMQIALAQAKEARLNILGQMQEAVKGP-Q 567
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS HAP + MK+ +KI +IG GG+ ++++ ETG E I+ +DGT+ I A +
Sbjct: 568 ELSAHAPRLFTMKIHQDKIRDVIGKGGETIRALTAETGTE-INIAEDGTITIAASTSEAG 626
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAE 806
E +K I +T VG +Y IK + G V + PG++GL HIS++S + +
Sbjct: 627 EAAKRRIEEITAEVEVGKVYEGTVIKILDNNVGAIVSVMPGKDGLVHISQISHDRVKNVS 686
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
D +++G V VK +E++D+G++RLS +ALL + E P +
Sbjct: 687 DYLQIGQQVKVKALEIDDRGRVRLSIKALLEKVPQEPKPAE 727
>gi|138894789|ref|YP_001125242.1| polynucleotide phosphorylase [Geobacillus thermodenitrificans
NG80-2]
gi|196247587|ref|ZP_03146289.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
gi|187610268|sp|A4IME3.1|PNP_GEOTN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134266302|gb|ABO66497.1| Polynucleotide phosphorylase PNPase [Geobacillus
thermodenitrificans NG80-2]
gi|196212371|gb|EDY07128.1| Polyribonucleotide nucleotidyltransferase [Geobacillus sp. G11MC16]
Length = 722
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/745 (41%), Positives = 451/745 (60%), Gaps = 58/745 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R +++ETG + +QA+GA V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDVAGRPLVIETGELAKQANGAALVRYGDTVVL-STATASREAKDVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP +GF +E Q++S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSPEV 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG + +F++NPT ++ME S + L++AG+ DAI M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRIDGQFVINPTVEQMEKSDMHLIVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + V+ + + + GK KM + P PEL + +
Sbjct: 189 VEAGADEVPEEVMLEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPELEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ K +Q+ K+ R A+ ++ G ++K E E+
Sbjct: 249 LAEADIKKAVQVPEKLARDAAIEDVK---------AGVIAK-------------YEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE K ++ +L KLV +EV RR I R DGR
Sbjct: 287 DEE----------------KLKQVQEILH-----KLVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L+ + E KRF
Sbjct: 321 KVDEIRPLSSAVGILPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLE-ESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNEDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++ALQQA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTRDILEEALQQARKGRLEILDHMMQTLSEPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I IM + P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ D + +K+K I
Sbjct: 554 PKILIMHINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVDEEANQKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG +Y ++K I +G FVE+ G++GL HISEL+ + K ED+V +GD
Sbjct: 613 IEDIVREVEVGQVYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEERIGKVEDIVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPE 838
+ VK+ E++ +G++ LSR+A+L E
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVLRE 696
>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
FAM18]
gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis FAM18]
Length = 711
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 16 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 75
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 76 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 135
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 136 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 195
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 196 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 253
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 254 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 283
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 284 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 325
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 326 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 384
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 385 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 444
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 445 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 498
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 499 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 557
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 558 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 616
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 617 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 676
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 677 QVVNVKALEVDDRGRVRLSIKALL 700
>gi|8928245|sp|O34275.2|PNP_YEREN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 706
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 434/746 (58%), Gaps = 60/746 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 HARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L ++D +R R++ G
Sbjct: 297 LGSVEKD-------------------------------------------VVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG ID E DGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIDIEADGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
+++G V VK+IEV+ +G++RLS +
Sbjct: 665 YLQMGQEVPVKVIEVDRQGRIRLSMK 690
>gi|2462716|emb|CAA71697.1| pnp [Yersinia enterocolitica]
Length = 711
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 434/746 (58%), Gaps = 60/746 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 9 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 68
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 69 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 128
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 129 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 188
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 189 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWHAEPVNEAL 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 248 HARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDAAE-IQDI 301
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L ++D +R R++ G
Sbjct: 302 LGSVEKD-------------------------------------------VVRSRVLRGE 318
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 319 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 378 TDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 437
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 438 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 491
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 492 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 551
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG ID E DGT+KI A D
Sbjct: 552 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIDIEADGTIKIAATDGDKA 610
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 611 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTD 669
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
+++G V VK+IEV+ +G++RLS +
Sbjct: 670 YLQMGQEVPVKVIEVDRQGRIRLSMK 695
>gi|240016088|ref|ZP_04722628.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
FA6140]
Length = 706
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 439/744 (59%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T+++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERNYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKRLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKISQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|78067050|ref|YP_369819.1| polynucleotide phosphorylase [Burkholderia sp. 383]
gi|123742554|sp|Q39EE1.1|PNP_BURS3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77967795|gb|ABB09175.1| 3' exoribonuclease [Burkholderia sp. 383]
Length = 715
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 316/755 (41%), Positives = 445/755 (58%), Gaps = 59/755 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D LSE++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEW-DWQPAPKNEPLIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A +L+ Q+++K R L + Y + T L ED
Sbjct: 252 AQNDLLAAYQLRDKQARSTKLKEV------------YAA---------TSAKLEEDASAA 290
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
V D K+T V V ++ +K +R +I+ G R DGR
Sbjct: 291 GTVAAD---------------KAT--------VGNVLFDIEAKIVRSQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSDGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADA----ENPP 845
V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAAASQSDTPP 713
>gi|433513116|ref|ZP_20469910.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63049]
gi|432248793|gb|ELL04217.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63049]
Length = 706
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPKDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|255658262|ref|ZP_05403671.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
DSM 20544]
gi|260849574|gb|EEX69581.1| polyribonucleotide nucleotidyltransferase [Mitsuokella multacida
DSM 20544]
Length = 689
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 302/738 (40%), Positives = 443/738 (60%), Gaps = 59/738 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R +++E G + +QA+GAV V G+T++ + + P E DFFPL V+Y+E+ AAG+
Sbjct: 11 RPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKI 70
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR +L RLIDRP+RP KGF ++ QI++ VLS + + P+ A+
Sbjct: 71 PGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPELAAMIG 130
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A+ +S++P IAGVRVG V D+F++NPT ++ + S L+L +AGS DA++M+E
Sbjct: 131 ASCALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSHDAVMMVEAGA 190
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ L E++++ A+ G + ++ + + + CGK K + L P E+ + + + A +
Sbjct: 191 NELPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKSEPKLFLVPHEMEEAIRDYAKDR 250
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
L ++ +K+ R ++ V+ D +E P++ D+E+
Sbjct: 251 LDAAVRNPDKLDRDAHIAE--------------VTTDTMEHFLELYPEM------DKEIA 290
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
+ ++ +R I R DGR + +
Sbjct: 291 I------------------------------AIHDLEKSVVRHMITHEKIRPDGREVEEV 320
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RP+S GLLPR HGS LFTRG+TQ L V TLG Q ID L + K + Y+FP
Sbjct: 321 RPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDGL-GPETTKHYIHHYNFP 379
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
SVGE + +P RREIGHG LAERAL PV+PS +FPYTIR+ S + ESNGSSSM SV
Sbjct: 380 GYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPYTIRLVSEVLESNGSSSMGSV 439
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG L+L +AGVPIK ++GVAMG+V + D++ IL+DI G EDA GDMDFKVAG
Sbjct: 440 CGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQY------TILTDIQGMEDALGDMDFKVAG 493
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
+GITA QMDIKV G++ ++ ALQQAK GR IL +ML+C P+ LS +AP +
Sbjct: 494 TTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDKPAAELSPYAPRVET 553
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+K+K +KI +IGSGGK VK II+ETGV+ ID +DG + IT+ D ++K+K +I ++
Sbjct: 554 IKIKVDKIRDVIGSGGKVVKKIIDETGVD-IDIHEDGNIFITSNDAEGMKKAKQMIEDIV 612
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG+IY + + +G FVE+ PG+EGLCHIS+L+ + + K EDVV+VGD + VK
Sbjct: 613 REVEVGEIYTG-RVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVEDVVQVGDQLQVK 671
Query: 819 LIEVNDKGQLRLSRRALL 836
++E++DKG++ LS +A+L
Sbjct: 672 VVEIDDKGRINLSHKAVL 689
>gi|16124290|ref|NP_418854.1| polynucleotide phosphorylase [Caulobacter crescentus CB15]
gi|221232972|ref|YP_002515408.1| polynucleotide phosphorylase/polyadenylase [Caulobacter crescentus
NA1000]
gi|81536356|sp|Q9AC32.1|PNP_CAUCR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782712|sp|B8GWZ0.1|PNP_CAUCN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13421126|gb|AAK22022.1| polyribonucleotide nucleotidyltransferase [Caulobacter crescentus
CB15]
gi|220962144|gb|ACL93500.1| polyribonucleotide nucleotidyltransferase/polynucleotide
adenylyltransferase [Caulobacter crescentus NA1000]
Length = 712
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 438/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNYQE+
Sbjct: 9 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTF 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 69 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ LS P I RVG V +++NPT EM++S++DL++AG+ DA++M
Sbjct: 129 LGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADAVMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V ++ + + + L E K P+ D IK
Sbjct: 189 VESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDAIK------ 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++++ G ++ +I+ K R +A+ + ++K + L
Sbjct: 243 -AKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALG-------------------- 281
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L DE+ P + + + +FKE+ + +RR I++ G
Sbjct: 282 LSDEN--------------------------PTGYDPLKLGAIFKELEADVVRRGILDTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 316 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ DFPYTIR+ S IT
Sbjct: 376 -ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+T+ QMDIK+ GIT +M++AL QAK+GR HIL EM K P
Sbjct: 489 HLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRA 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ AP I + + +KI +IGSGGK ++ I+ TG + +D DDG VK++A D + +
Sbjct: 549 DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAK-VDINDDGVVKVSASDGAKI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T VG IY +K + +G FV ++GL H+S++S+ +AK D
Sbjct: 608 KAAIDWIKSITDEAEVGKIYDGKVVK-VVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 667 VLKEGQMVKVKLLGFDDRGKTKLSMKVV 694
>gi|417647422|ref|ZP_12297262.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU144]
gi|418411693|ref|ZP_12984959.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis BVS058A4]
gi|420163391|ref|ZP_14670138.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM095]
gi|420167630|ref|ZP_14674282.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM087]
gi|420185422|ref|ZP_14691514.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM040]
gi|329724343|gb|EGG60855.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU144]
gi|394235080|gb|EJD80654.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM095]
gi|394237658|gb|EJD83144.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM087]
gi|394254408|gb|EJD99377.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM040]
gi|410891276|gb|EKS39073.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis BVS058A4]
Length = 701
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/750 (41%), Positives = 448/750 (59%), Gaps = 69/750 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV E+ H++
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF-------------QQEIIDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTI----LSENGYVSKDETVGIVETIP 385
I +E V V + ++ + + K+L+ L+E VLT EN K+E VG
Sbjct: 228 PIK-QEFVPVERDEDLVEKVKSLTEDKGLKETVLTFDKQQRDENLDALKEEVVG------ 280
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L++ED + E +V +V + ++ + +RR I +
Sbjct: 281 HFLDEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIAD 315
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L +
Sbjct: 316 EKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPE 375
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
E KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S
Sbjct: 376 VE-KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSE 434
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
+ ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G
Sbjct: 435 VLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGM 488
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
EDA GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 489 EDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQP 548
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 549 REELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQA 607
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ ++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K
Sbjct: 608 MINRAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKV 666
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
EDV+K+GD ++VK+ E++ +G++ S + L
Sbjct: 667 EDVLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
Length = 698
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 309/747 (41%), Positives = 449/747 (60%), Gaps = 61/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V K+++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G D E+K LVE ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHD-------EIKRLVEF-------------QQQIVDHLQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ E + V + + + R +AL+ L+E VLT + + DE E + ++
Sbjct: 228 PVKS-EFIPVERDEALVSRVQALTEEKGLKETVLTFDKKQRDDNLDELKA--EIAAEFID 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ D + E++++ +V + ++ + +RR I R
Sbjct: 285 EADPENELLIN-------------------------EVHAILNDLVKEEVRRLIAAEKIR 319
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRP+ S G+LPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E K
Sbjct: 320 PDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE-K 378
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FP SVGE G + AP RREIGHG L ERAL ++P + FPYTIR+ S + ES
Sbjct: 379 RFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTIRIVSEVLES 438
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 439 NGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMEDAL 492
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P L
Sbjct: 493 GDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPRAEL 552
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP + IM + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + + +
Sbjct: 553 SAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIYIGAVDQAMINR 611
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
SK II +T VG IY + ++K I YG FVEI G++ L HIS++S + + K EDV+
Sbjct: 612 SKEIIEAITREAEVGQIY-DAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDVL 670
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD + VK+ E++ +G++ S + L+
Sbjct: 671 KIGDTIKVKITEIDKQGRVNASHKVLV 697
>gi|89070994|ref|ZP_01158217.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
HTCC2516]
gi|89043457|gb|EAR49672.1| polyribonucleotide nucleotidyltransferase [Oceanicola granulosus
HTCC2516]
Length = 710
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 320/759 (42%), Positives = 444/759 (58%), Gaps = 75/759 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G+ + +ETG + RQA G V T GET + +V A E DFFPL V+YQE++
Sbjct: 9 IQWGEETLTLETGKIARQADGTVIATLGETSVMAAVTFAKTQKEGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S P IAG RVG ++++NPT +M+ D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGAPFMGPIAGCRVGYEDGEYVLNPTVDDMQGLRNNPDQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E L+EE ++ AV + ++ + + + L E K + PP+
Sbjct: 189 KDAVMMVESEAYELTEEEMLGAVTFAHEQIQPVVDLIIDLAEDSAK----EPFDFSPPDY 244
Query: 327 --LYKHVEEIAGEELVKV-LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
LY+ V+ AGEE V+ I +K R A+S+ ++++ L+E
Sbjct: 245 SALYEAVKA-AGEEKVRAAYAISDKQERVAAISAAKDEIKASLTE--------------- 288
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ LED P L + K++ S LR +
Sbjct: 289 --EQLED----------------------------PNLGT------ALKKLESAVLRGDV 312
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
V+ GRR DGR D +RPI S +LPR HGSALFTRGETQ+L V TLG Q ID L
Sbjct: 313 VKNGRRIDGRALDEVRPIVSETQILPRTHGSALFTRGETQALVVTTLGTGDDEQIIDALH 372
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ F L Y+FPP SVGE GR+G P RREIGHG LA RAL+ VLP DFPYTIR+
Sbjct: 373 GNFR-SNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPPATDFPYTIRLV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL+ DG+ IL+DI
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED-----DGSYGILTDIL 486
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG E+GIT+ QMDIKV GIT +MKKAL+QAK GR HIL EM K
Sbjct: 487 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKKALEQAKAGRMHILGEMAKAIT 546
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
++ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 547 EAAD-FSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGIIKIASPN 604
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+++K+ +I ++ P G +Y+ +K I +G FV R+GL H+S++ + L
Sbjct: 605 GEAIQKAYDMIYSIVAEPEEGKVYKGTVVK-IVDFGAFVNFFGKRDGLVHVSQIENKRLN 663
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D +K G V VKL+ +D+G++RLS + + E E
Sbjct: 664 HPSDALKEGQEVWVKLLGFDDRGKVRLSMKVVDQETGEE 702
>gi|359431822|ref|ZP_09222233.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20652]
gi|357921524|dbj|GAA58482.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20652]
Length = 704
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/752 (41%), Positives = 435/752 (57%), Gaps = 55/752 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q + + G + +ETG + RQA GAV + G+T + +V DFFPL VN
Sbjct: 2 QAIIKEFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGF KREGR D E L+ RLIDRP+RP GF +E Q+++ V+S +
Sbjct: 62 YQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+A+S +P S I RVG + ++++NPT +E+E+SQLDL++AG+
Sbjct: 122 EIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E + L+E++++ AV G + + I ++ GKP T L
Sbjct: 182 DKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAEAGKPTWDWTAPAKNVAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V IA +++ I +K+ R++AL V+KDE V ++ +L
Sbjct: 242 EDKVAAIAADKVGAAYLITDKVARKEALG---------------VAKDEVVAVLTA--EL 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E E D++ ++ +F + K +R RI G
Sbjct: 285 AEGESLDKQ-----------------------------EISKIFGSLEKKIVRGRIASGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D IR + G+LPR HGSA+FTRGETQ+L TLG ++ +Q ID+L +
Sbjct: 316 KRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+P+ +FPY+IRV S IT
Sbjct: 376 -NHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTLTEFPYSIRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL +AGVPIK S+AG+AMG+V + D+F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG GITA QMDIK+ GIT +M+ AL+QAK R HIL M + PS
Sbjct: 489 HLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAISAPSE 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS AP I+ MK+ +KI +IG GG ++ + EETG I+ DDGT+KI A D S
Sbjct: 549 ELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGT-TIEIGDDGTIKIAATDGESA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I LT VG IY ++ I +G FV I PG++GL HIS++S+ + D
Sbjct: 608 ANAISRIEQLTAELEVGTIYEGKVVR-IVDFGAFVNILPGKDGLVHISQISTERVNNVAD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEA 839
+ G V VK++EV+ +G++RLS + + A
Sbjct: 667 HLSEGQEVKVKVLEVDRQGRVRLSIKEAMESA 698
>gi|238783512|ref|ZP_04627534.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
gi|238715567|gb|EEQ07557.1| hypothetical protein yberc0001_8550 [Yersinia bercovieri ATCC
43970]
Length = 706
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 432/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPK-WDWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++DE++ E I D+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDESLNASE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L D V +R R++ G
Sbjct: 297 LGD-------------------------------------------VEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVMEVDRQGRIRLS 688
>gi|218767879|ref|YP_002342391.1| polynucleotide phosphorylase [Neisseria meningitidis Z2491]
gi|385337712|ref|YP_005891585.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
gi|433475367|ref|ZP_20432708.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
88050]
gi|433479519|ref|ZP_20436813.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63041]
gi|433515327|ref|ZP_20472099.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2004090]
gi|433517263|ref|ZP_20474012.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
96023]
gi|433519483|ref|ZP_20476204.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
65014]
gi|433523680|ref|ZP_20480345.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97020]
gi|433527872|ref|ZP_20484483.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3652]
gi|433530046|ref|ZP_20486639.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3642]
gi|433532304|ref|ZP_20488870.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2007056]
gi|433534154|ref|ZP_20490699.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2001212]
gi|433540616|ref|ZP_20497071.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63006]
gi|187610303|sp|A1IR09.1|PNP_NEIMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121051887|emb|CAM08193.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis Z2491]
gi|319410126|emb|CBY90462.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
WUE 2594]
gi|432211185|gb|ELK67140.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
88050]
gi|432217322|gb|ELK73191.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63041]
gi|432253915|gb|ELL09251.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2004090]
gi|432254272|gb|ELL09607.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
96023]
gi|432255474|gb|ELL10803.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
65014]
gi|432260579|gb|ELL15837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97020]
gi|432266179|gb|ELL21367.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3652]
gi|432267974|gb|ELL23146.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM3642]
gi|432268249|gb|ELL23420.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2007056]
gi|432272664|gb|ELL27771.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2001212]
gi|432277631|gb|ELL32677.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
63006]
Length = 706
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|385328094|ref|YP_005882397.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|416178664|ref|ZP_11610692.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|416192671|ref|ZP_11616777.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|433492260|ref|ZP_20449354.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|433494337|ref|ZP_20451407.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|433496521|ref|ZP_20453562.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|433498581|ref|ZP_20455590.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|433502732|ref|ZP_20459697.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
gi|187610328|sp|A1KT19.2|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|432229049|gb|ELK84742.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|432231011|gb|ELK86681.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|432234415|gb|ELK90035.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|432235221|gb|ELK90837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|432240828|gb|ELK96359.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
Length = 706
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|384538122|ref|YP_005722207.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
SM11]
gi|336035014|gb|AEH80946.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
SM11]
Length = 717
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/749 (41%), Positives = 444/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP I G RVG + ++++NP EM++S LDL++AG+ +A+
Sbjct: 127 DVVAMVAASAALTLSGVPFMGPIGGARVGYINGEYVLNPHLDEMDESTLDLVVAGTQEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + V L E+ K P+ + PE +
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFN------PEDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA +EL +I K R A+ +++ KV
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKE---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ P +E ++ VFK + +K +R I++
Sbjct: 279 ----------------------HFLPEGVEN-PAHTAE-EIAAVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI + G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 375 K-ENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG + GIT+ QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTDAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ +DDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIDDDGTVKIASASAKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|223044246|ref|ZP_03614283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
SK14]
gi|222442396|gb|EEE48504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
SK14]
Length = 699
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/749 (41%), Positives = 454/749 (60%), Gaps = 65/749 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V +++NP+ E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ PE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF--QQEIIDHIQ---PE------ 229
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+E + V + + + + KAL+ L+E VLT + +DE + + E +
Sbjct: 230 ---KQEFIPVERDEALVEKVKALTEEKGLKETVLTFDKQQ----RDENLDALKEEVVAHF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E +++ +V + ++ + +RR I +
Sbjct: 283 IDEEDPENEALIN-------------------------EVYAILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDHPRK 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++K II ++T VG +Y N ++K I YG FVE+ PG++ L HIS++S + K ED
Sbjct: 610 DRAKEIIEDITREAEVGQVY-NAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
V+ +GD ++VK+ E++ +G++ S +ALL
Sbjct: 669 VLNIGDSIEVKITEIDKQGRVNASHKALL 697
>gi|416197416|ref|ZP_11618626.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|433487991|ref|ZP_20445159.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|433504716|ref|ZP_20461656.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|433506779|ref|ZP_20463691.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|433509087|ref|ZP_20465960.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|433511024|ref|ZP_20467856.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|389606162|emb|CCA45075.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha522]
gi|432224457|gb|ELK80222.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|432242231|gb|ELK97755.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|432242568|gb|ELK98086.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|432247901|gb|ELL03336.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|432248515|gb|ELL03940.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
Length = 706
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|350425685|ref|XP_003494200.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like [Bombus
impatiens]
Length = 892
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/731 (41%), Positives = 431/731 (58%), Gaps = 66/731 (9%)
Query: 122 ETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLID 181
+T ++ +V E DFFPL VNYQER AAGR GGFFKREGR + E L+ RLID
Sbjct: 3 DTAVFVTVVAQKKVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLID 62
Query: 182 RPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGL 241
RPLRP +GF +E QI++ V+S + PD +A+ A A++LS VP I RVG
Sbjct: 63 RPLRPLFPEGFVNEIQIIATVVSVNPEISPDIVAMIGASAALSLSGVPFHGPIGAARVGF 122
Query: 242 VGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREIS 301
+ ++FI+NPTT E+ S+LDL++AG++ A+LM+E D L+EE ++ AV G + + +
Sbjct: 123 IDNQFILNPTTSELPKSRLDLVVAGTNSAVLMVESEADLLTEEQMLSAVVFGHEQQQVVI 182
Query: 302 NEVKALVEMCGKPKMLDTIKLPPPE----LYKHVEEIAGEELVKVLQIKNKIPRRKALSS 357
+ + V G + PP LY + E+A L +I K R +
Sbjct: 183 DNINEFVAKAGNVEW----DWQPPAKNEILYHTIVELAASRLGDAYRITEKQTRYAQIDQ 238
Query: 358 LEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKS 417
++E VLT L N E I DE+E +++VD E
Sbjct: 239 IKEDVLTTLKANN-----------EEI-----DENEVLKIIVDLE--------------- 267
Query: 418 TPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALF 477
S+ +R+R++ G R DGR D IR + R G+LPR HGS+LF
Sbjct: 268 ------------------SQIVRQRVIRGEPRIDGREKDMIRALDIRTGVLPRTHGSSLF 309
Query: 478 TRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIG 537
TRGETQ+L TLG ++ AQ ID++ + + RF L Y+FPP SVGE G +G+P RREIG
Sbjct: 310 TRGETQALVTATLGTERDAQIIDDI-TGEHTDRFLLHYNFPPYSVGETGMVGSPKRREIG 368
Query: 538 HGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIA 597
HG LA+R + V+PS N+FPYT+RV S ITESNGSSSMASVCG LAL DAGVPIK S+A
Sbjct: 369 HGRLAKRGVAAVMPSVNEFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKASVA 428
Query: 598 GVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITL 657
G+AMG+V + D+F ++LSDI G ED GDMDFKVAG G++A QMDIK+ GIT
Sbjct: 429 GIAMGLVKEGDDF------VVLSDILGDEDHLGDMDFKVAGTSTGVSALQMDIKIEGITK 482
Query: 658 PVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKV 717
+M+ AL QAK R HIL M + P +S+ AP I+ + + P+KI +IG GG +
Sbjct: 483 EIMQIALNQAKSARLHILNVMEQAINTPRKEISEFAPRIYTININPDKIRDVIGKGGATI 542
Query: 718 KSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAP 777
+++ EETG I+ EDDGTVKI A D + + I+++T VG IY ++ I
Sbjct: 543 RALTEETGT-TIEIEDDGTVKIAAADGKKAQMAIDRINDITADVEVGKIY-TGKVVRIVD 600
Query: 778 YGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLP 837
+G FV I G+EGL H+S+++ + + K D ++VG V VK++E++ +G++RLS +
Sbjct: 601 FGAFVAIGGGKEGLVHVSQIADHRVEKVTDYLQVGQEVQVKVLEIDRQGRIRLSMKEAAS 660
Query: 838 EADAENPPVKL 848
+A ++ + L
Sbjct: 661 QAAVDSATLTL 671
>gi|238797549|ref|ZP_04641046.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
gi|238718546|gb|EEQ10365.1| hypothetical protein ymoll0001_5180 [Yersinia mollaretii ATCC
43969]
Length = 706
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 432/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 VNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPK-WDWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++DE++ E I D+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDESLNASE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L D V +R R++ G
Sbjct: 297 LGD-------------------------------------------VEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKENENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVMEVDRQGRIRLS 688
>gi|359797098|ref|ZP_09299685.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
arsenitoxydans SY8]
gi|359364866|gb|EHK66576.1| polynucleotide phosphorylase/polyadenylase [Achromobacter
arsenitoxydans SY8]
Length = 720
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 318/750 (42%), Positives = 442/750 (58%), Gaps = 61/750 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G +++ETG + RQASGAV V+ +T++ +V + FFPL V+Y
Sbjct: 5 VTKSFQYGQHTVVLETGEIARQASGAVVVSIEDTVVLATVVASKKAKPGQTFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRPLRP + FY+E Q++ LS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEDFYNEVQVVIHTLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P S I RVG + ++ +NPT +++ S+LDL++AG+++
Sbjct: 125 DPDIAAMIGASAALAISGIPFSGPIGAARVGYIDGQYALNPTATQLKSSKLDLVVAGTEN 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E D LSEE+++ V G + ++ + N + LV+ GKP L
Sbjct: 185 AVLMVESEADQLSEEVMLGGVVYGHEQMQAVINAIHELVKDAGKPDWDWQAPAKDEALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPR----RKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
V A E L QI+ K R R+ + + K+ +E G E++P
Sbjct: 245 AVTAAAQEGLNAAYQIREKQARTAKLREVSADVSAKLAAAAAEKG-----------ESLP 293
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
D V VD ++FS + S +R +I+
Sbjct: 294 D---------AVTVDN------------------IMFS----------LESAIVRGQILN 316
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR +RPIS R G+LPRAHGSALFTRGETQ+L V TLG KQ Q ID L +
Sbjct: 317 GEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGE 376
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
RF + Y+ PP + GE GRIG P RREIGHG LA+R+L P+LP+ DF YTIR+ S
Sbjct: 377 YR-DRFMMHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLIPLLPAPEDFQYTIRLVSE 435
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCGG LA+ DAGVP+K +AGVAMG++LD +F +L+DI G
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDGGKFA------VLTDILGD 489
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG E+G+TA QMDIK+ GIT +M+ AL QA++GR HIL +M
Sbjct: 490 EDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRLHILGKMKDALDGS 549
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS AP + +K+ PEKI +IG GG ++++ EETG + ID DDGT+ I + D +
Sbjct: 550 RGELSAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQ-IDISDDGTIVIASVDEA 608
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
++++ I LT VG IY ++ + +G V++ PGR+GL HISE+++ +A
Sbjct: 609 QAKEAQRRIVELTADVEVGQIYEGSVLR-LLDFGAIVQVLPGRDGLLHISEIANYRIANI 667
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DV+KVG V VK+IE +DKG+LRLS +A+
Sbjct: 668 NDVLKVGQQVRVKVIEADDKGRLRLSIKAI 697
>gi|304404299|ref|ZP_07385961.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
curdlanolyticus YK9]
gi|304347277|gb|EFM13109.1| polyribonucleotide nucleotidyltransferase [Paenibacillus
curdlanolyticus YK9]
Length = 701
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 445/752 (59%), Gaps = 62/752 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R +++ETG + +QA+ AVTV GET++ +C SEP D FFPL VNY+
Sbjct: 5 VELTLGGRPLVLETGRLAKQANAAVTVRYGETVV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ A G+ GGF KREGR + +L RL DRP+RP GF ++ QI++ V+S D
Sbjct: 62 EKLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPDGFRNDVQIVNLVMSVDQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S+VP + I GV VG + +F++NPT ++ S + +++AG+ D
Sbjct: 122 SPEIAAMIGTSAALSISDVPFNGPIGGVVVGRIDGQFVINPTVEQEAQSDIFVVVAGTKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E D + E ++++A+ G D ++ I ++ + GK KM + ++
Sbjct: 182 AIMMVEAEADEVPESVMLEAIMFGHDEIKNIVKSIEEFQSIAGKTKMEVKLHAVDEQVNA 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V A E L + ++I K R+ A+ ++ VET+ E
Sbjct: 242 DVRAYASERLTQAIRIAEKHARQDAIDAIN---------------------VETVAHFNE 280
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
E TP L DVK V ++ + +RR I R
Sbjct: 281 IYAE------------------------TPELMD--DVKEVLYDIVKEEVRRLITHDKVR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + IRPI LLPR HGS LFTRG+TQ+L++ TLG Q +D + S +E K
Sbjct: 315 PDGRGLNEIRPIDCDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGI-SPEESK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + P RREIGHG L ERAL V+P +++FPYTIR+ S ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSKVIPPESEFPYTIRLVSECLES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AG+AMG++ D + F ILSDI G ED
Sbjct: 434 NGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGEHFS------ILSDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +G+TA QMDIK+ GI ++ +AL+QAK+GR HIL +ML+ P +L
Sbjct: 488 GDMDFKVAGTAEGVTAIQMDIKIEGIDRAILTQALEQAKEGRMHILGKMLEVMGEPRKNL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
SK+AP I +++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + +K
Sbjct: 548 SKYAPKIMTLRINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGMVYIASSNEEMNQK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++AII + VG+IY +K I +G FVEI P ++GL HIS++S+ +AK EDV+
Sbjct: 607 ARAIIEGIVKEVVVGEIYLGT-VKRIEKFGAFVEILPNKDGLVHISQVSTERIAKIEDVL 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL-PEAD 840
K+GD + VK+ E++ +G++ LSR+A+L PE++
Sbjct: 666 KIGDQITVKVTEIDQQGRINLSRKAVLTPESE 697
>gi|254804638|ref|YP_003082859.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
alpha14]
gi|254668180|emb|CBA04880.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha14]
Length = 706
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GF+H+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFFHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQTRSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase [Neisseria meningitidis MC58]
gi|81784821|sp|Q9K062.1|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
MC58]
Length = 707
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 250 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|221640608|ref|YP_002526870.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
KD131]
gi|254782733|sp|B9KP47.1|PNP_RHOSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221161389|gb|ACM02369.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
KD131]
Length = 716
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/763 (40%), Positives = 434/763 (56%), Gaps = 73/763 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA G+V T GET + +V A DFFPL V+YQER+
Sbjct: 9 IEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP I RVG G ++++NP +M+ + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQRLDLVIAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV+ G +A++ + + + E + PP+
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAH----EPFDFSPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ + ++ I+ K R A+ + + LSE DE +G
Sbjct: 245 AALYAKVKSLGEAQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELA--DENLGTA--- 299
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
FK++ S LR I+
Sbjct: 300 ----------------------------------------------FKKLESSILRGDII 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
GG R DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID L
Sbjct: 314 NGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NSR-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGKWAVLTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHILGEMSKAL-S 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+NS S +AP I + + +KI +IGSGGK ++ I+E +G + +D DDG +KI + D
Sbjct: 547 SANSFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASNDQ 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++++K+ +I ++ P G IY +K + +G FV R+GL H+S++++ L
Sbjct: 606 AAIKKAYDMIWSIVAEPEEGQIYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANKRLTH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
+V+K G V VKL+ +++G++RL + + E E P K
Sbjct: 665 PNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIQPEK 707
>gi|149927537|ref|ZP_01915791.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
gi|149823810|gb|EDM83036.1| polynucleotide phosphorylase/polyadenylase [Limnobacter sp. MED105]
Length = 714
Score = 544 bits (1401), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/750 (41%), Positives = 452/750 (60%), Gaps = 56/750 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA G+V VT +T++ +V A DFFPL V+Y E+F AA
Sbjct: 11 YGQHTVTLETGEIARQAGGSVIVTVDDTVVLATVVAAKSAKPGQDFFPLTVDYVEKFYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREG+ + E L RLIDRPLRP +GF++E Q+ V+S + PD A
Sbjct: 71 GRIPGGFFKREGKGTEQETLNARLIDRPLRPLFPEGFFNEVQVTLTVMSINPEVNPDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++++ +P + + G RVG + D++++NPT +++DS++DL++AG++ A+LM+E
Sbjct: 131 MLGASAALSIAGIPFNGPVGGARVGYINDQYVLNPTATQLKDSKMDLIVAGTEAAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
LSEE+++ + G + ++ N + AL GKP+ D P E L V E+
Sbjct: 191 SEAHELSEEIMLGGIMFGHEQMQAAINAIHALTAKAGKPE-WDWKPAPVNEPLLAAVTEL 249
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
AGE+L ++ K R + L + +V L +++++ GI
Sbjct: 250 AGEKLAAAYKMTEKQARSQRLKEISAEVAAELPAK--LTEEQRAGITNA----------- 296
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
D GD+ +F + +K +R +I+ G R DGR
Sbjct: 297 ---------DVGDI------------MFG----------LEAKIVRGQILNGEPRIDGRD 325
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI+ R G+LPRAHGSALFTRGETQ+L V TLG + Q ID + + RF
Sbjct: 326 TRTVRPITVRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQMIDAVAGEYR-DRFMFH 384
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+GAP RREIGHG LA RA+E +LP+ DF YT+RV S ITESNGSSS
Sbjct: 385 YNMPPYATGECGRMGAPKRREIGHGRLARRAVEMMLPAPEDFQYTMRVVSEITESNGSSS 444
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGG L+L DAGVP+K +AG+AMG++ + ++F +L+DI G ED GDMDF
Sbjct: 445 MASVCGGALSLMDAGVPLKQLVAGIAMGLIKEENKFA------VLTDILGDEDHLGDMDF 498
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E+G+TA QMDIK+ GIT +M+ AL QA++GR HIL M + + LS +AP
Sbjct: 499 KVAGTENGVTALQMDIKIQGITKEIMQVALAQAREGRMHILGIMKEATGGNVGELSAYAP 558
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ MK+ PEKI +IG GG ++ I E+TG +ID ++DG++ I + D + E++K +I
Sbjct: 559 RMITMKINPEKIRDVIGKGGATIRGITEQTGA-SIDIKEDGSITIASVDGDAGERAKKLI 617
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
++T VG +Y +K + +G V + PG++GL HIS++++ + D +K G +
Sbjct: 618 EDITAEVEVGAVYEGTVLK-LLDFGAIVSVLPGKDGLLHISQIANERVNTVGDFLKEGQV 676
Query: 815 VDVKLIEVNDKGQLRLSRRALL-PEADAEN 843
V VK++E ++KG+LRLS +ALL PEA AE
Sbjct: 677 VKVKVLEADEKGRLRLSMKALLAPEAPAEQ 706
>gi|374335287|ref|YP_005091974.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
gi|372984974|gb|AEY01224.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
Length = 715
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/744 (41%), Positives = 430/744 (57%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G + +ETG + RQA+ AV + +T + SV E DFFPL VN
Sbjct: 2 NPIVKTFQYGQHTVTLETGVIARQATAAVMASIDDTSVLVSVVGKREADESRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FFKREGR + E L RLIDRP+RP GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGSFFKREGRPTEGETLTARLIDRPIRPLFPDGFKNEVQVIATVMSANP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +++ A+A+S +P + I RVG + ++++NP+ E++DSQLDL++AG+
Sbjct: 122 EIAPDIISMLGTSAALAISGIPFAGPIGAARVGYMNGEYVLNPSISELKDSQLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
A+LM+E L EE+++ AV G + ++ N + G K L
Sbjct: 182 AGAVLMVESEASVLPEEVMLGAVMYGHEQLQTAVNAINEFAAEVGTQPWDWQPKAENEAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+A EL + +I +K RR A+S ++ KV ++E P+
Sbjct: 242 KAKVAELASAELGEAYRITDKTARRDAISDIKAKV--------------QAAVLEQSPE- 286
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E+ E ++ + ++ +R R+V G
Sbjct: 287 -------------AEIKE---------------------IQELLGKLEKTIVRGRVVRGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR ++ GLLPRAHGSALFTRGETQ+L TLG ++ AQ ID L + +
Sbjct: 313 PRIDGREPDMIRALNVATGLLPRAHGSALFTRGETQALVAATLGTERDAQLIDEL-TGER 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S IT
Sbjct: 372 ANRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVAAVMPSQEEFPYTVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + + F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEAEGF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QA++ R HIL M + P
Sbjct: 486 HLGDMDFKVAGTSEGVTALQMDIKIEGITKEIMEVALKQARNARLHILKVMDEALQAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH +K+ PEKI +IG GG ++++ EETG I+ +DDGTVKI A D +
Sbjct: 546 DISDFAPRIHTIKINPEKIRDVIGKGGATIRALTEETGT-TIELDDDGTVKIAAVDGEAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I LT G IY ++ +A +G FV I PG++GL HIS+++ + D
Sbjct: 605 KLAIRRIEQLTAEVESGTIYEG-QVVRLADFGAFVNILPGKDGLVHISQITEERVKNVSD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+KVGD V VK++EV+ +G++RLS
Sbjct: 664 HLKVGDTVKVKVLEVDRQGRIRLS 687
>gi|421550310|ref|ZP_15996315.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69166]
gi|433471211|ref|ZP_20428602.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
68094]
gi|433477245|ref|ZP_20434568.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70012]
gi|433525893|ref|ZP_20482527.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69096]
gi|433538637|ref|ZP_20495117.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70030]
gi|402330525|gb|EJU65872.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69166]
gi|432209700|gb|ELK65667.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
68094]
gi|432216467|gb|ELK72348.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70012]
gi|432262084|gb|ELL17329.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
69096]
gi|432274645|gb|ELL29732.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
70030]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|338813338|ref|ZP_08625467.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
gi|337274697|gb|EGO63205.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
Length = 696
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/746 (41%), Positives = 442/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S ++ G R ++VE+G + +QA+GA V G+T + + + P E DFFPL V+Y+E
Sbjct: 3 SFQMQIGGRLLVVESGKLAKQANGAALVRYGDTAVLVTATASAEPREGIDFFPLTVDYEE 62
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREGR + +L RLIDRP+RP +GF ++ QI++ VLS D +
Sbjct: 63 RLYSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFSEGFRNDVQIVATVLSVDQDNP 122
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ A+ A A+++S++P I GVRVG + ++F++NPT +E E+S+L+L++AG+ DA
Sbjct: 123 PEIPAMIGASCALSISDIPFQGPIGGVRVGRIAEQFVINPTVKEQEESELNLVVAGTKDA 182
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E + LSE ++++A+ G D +R+I + +A+V+ G PK + P ++ +
Sbjct: 183 VLMVEAGANELSEAVILEAISFGHDVIRQIVDFQEAMVKEIGLPKKELKVYEPQADINQA 242
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V E Y+++ V + + D L
Sbjct: 243 VRE-------------------------------------YITEKMRVAVFNS--DKLTR 263
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E+ + V DG +++ P K D+ V ++V + +R+ I R
Sbjct: 264 EENIKAVKTDGAQHFAEIY--PDKGK---------DISYVMQKVLKEIVRKMITVDKIRP 312
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D +RPIS G+L R HGS LFTRG+TQ L V TLG Q +D L +E KR
Sbjct: 313 DGRKLDEVRPISCEVGVLARTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGL-GVEESKR 371
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FP SVGE P RREIGHG LAERAL PV+P +++FPYTIR+ S + ESN
Sbjct: 372 YIHHYNFPSYSVGETRPSRGPGRREIGHGALAERALVPVIPPESEFPYTIRLVSEVLESN 431
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSM SVCG L+L DAGVPIK ++GVAMG+V D + + IL+DI G EDA G
Sbjct: 432 GSSSMGSVCGSTLSLMDAGVPIKSPVSGVAMGLVKDGEYY------TILTDIQGMEDALG 485
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG G+TA QMDIK+ G+T +++ AL+QAK GR HIL ML P LS
Sbjct: 486 DMDFKVAGTTKGVTAIQMDIKIAGLTKDILQSALEQAKQGRMHILNTMLAVIQQPRPELS 545
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I M + P+KI +IG GGK +K II+ETGV +ID EDDG V I A D+ + +K+
Sbjct: 546 PYAPRIITMSIDPDKIRDVIGPGGKIIKKIIDETGV-SIDIEDDGKVFIAAVDMEAGQKA 604
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
II NL VG Y ++ I +G F EI PG+EGL HIS+L+ + K EDVVK
Sbjct: 605 VRIIENLVREVEVGAAYLG-KVTRIMNFGAFAEILPGKEGLIHISQLARERVNKVEDVVK 663
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
+GD VK+ E++ +G++ LSR+ LL
Sbjct: 664 IGDEFMVKVTEIDRQGRINLSRKELL 689
>gi|385854904|ref|YP_005901417.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 436/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|418329428|ref|ZP_12940496.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418630356|ref|ZP_13192838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU128]
gi|365230463|gb|EHM71558.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374837897|gb|EHS01455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU128]
Length = 701
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/747 (42%), Positives = 449/747 (60%), Gaps = 63/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ P + + VE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVTF--QQEIIDHIQ-PIKQEFVPVE 237
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTI----LSENGYVSKDETVGIVETIPDLL 388
E+LV+ K+ R L+E VLT EN K+E VG L
Sbjct: 238 R--DEDLVE------KVKRLTEDKGLKETVLTFDKQQRDENLDALKEEVVG------HFL 283
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
++ED + E +V +V + ++ + +RR I +
Sbjct: 284 DEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIADEKI 318
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 319 RPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE- 377
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S + E
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSEVLE 437
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 438 SNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMEDA 491
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 492 LGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQPREE 551
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 552 LSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMIN 610
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K EDV
Sbjct: 611 RAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVEDV 669
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+K+GD ++VK+ E++ +G++ S + L
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|238793025|ref|ZP_04636654.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
gi|238727625|gb|EEQ19150.1| Polyribonucleotide nucleotidyltransferase [Yersinia intermedia ATCC
29909]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 433/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 VNPDIVALIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
DA+LM+E LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 DAVLMVESEAQILSEDQMLGAVIFGHEQQQVVIENINALVAEVGKPK-WDWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++DE++ E I D+
Sbjct: 243 HARVAELAEARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDESLDASE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L D V +R R++ G
Sbjct: 297 LGD-------------------------------------------VEKNVVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVMEVDRQGRIRLS 688
>gi|417907039|ref|ZP_12550815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
VCU116]
gi|341596670|gb|EGS39261.1| polyribonucleotide nucleotidyltransferase [Staphylococcus capitis
VCU116]
Length = 699
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/749 (41%), Positives = 454/749 (60%), Gaps = 65/749 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ +LS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIILSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V +++NP+ E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVNEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ PE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF--QQEIIDHIQ---PE------ 229
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+E + V + + + + KAL+ L+E VLT + +DE + + E +
Sbjct: 230 ---KQEFIPVERDEALVEKVKALTEEKGLKETVLTFDKQQ----RDENLDALKEEVVAHF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E +++ +V + ++ + +RR I +
Sbjct: 283 IDEEDPENEALIN-------------------------EVYAILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDHPRK 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++K II ++T VG +Y N ++K I YG FVE+ PG++ L HIS++S + K ED
Sbjct: 610 DRAKEIIEDITREAEVGQVY-NAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
V+ +GD ++VK+ E++ +G++ S +ALL
Sbjct: 669 VLNIGDSIEVKITEIDKQGRVNASHKALL 697
>gi|385851577|ref|YP_005898092.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
gi|416213951|ref|ZP_11622644.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/744 (41%), Positives = 436/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG V +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYVNGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWSAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|294675841|ref|YP_003576456.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
SB 1003]
gi|294474661|gb|ADE84049.1| polyribonucleotide nucleotidyltransferase [Rhodobacter capsulatus
SB 1003]
Length = 717
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/761 (40%), Positives = 438/761 (57%), Gaps = 72/761 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA G+V T GET + +V A DFFPL V+YQE++
Sbjct: 9 IQWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKEAKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E LV RLIDRP RP + GF +E +++ VLS D ++ PD
Sbjct: 69 AAGKIPGGFFKREARPSEKETLVSRLIDRPCRPLFVPGFKNEVLVMATVLSCDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP I RVG +++NP +M + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIGAARVGFAHGAYVLNPAMDDMTKLRDNPEQRLDLVIAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E L+E+ ++ AV+ G + ++ + + + AL E K + PP+
Sbjct: 189 KDAVMMVESEAYELTEDEMLGAVKFGHEQMQPVIDLIIALAEDAAK----EPFHFDPPDY 244
Query: 328 YKHVEEI--AGE-ELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
++ + AGE E+ +++K R A+S+ V+ I
Sbjct: 245 SALLDRVKAAGEAEMRAAFALRDKQERSNAISA----------------------TVDLI 282
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L +ED +++++ K + S LR I+
Sbjct: 283 KSKLSEED-----------------------------LADINLGSAIKALESGILRGDII 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
GG R DGR +RPI + G+LPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 314 NGGARIDGRDNKTVRPIVAEVGILPRTHGSALFTRGETQGLVVTTLGTGDDEQIIDALNG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NFR-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L++ DG +L+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILES-----DGRWAVLTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMQQALAQAKDGRMHILGEMSKALSA 547
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 548 GRQEFSAHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASANA 606
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+++K+ +I ++ P G IYR +K + +G FV R+GL H+S+++ L
Sbjct: 607 EAIKKAYDMIYSIVAEPEEGKIYRGKVVK-LVDFGAFVNFFGKRDGLVHVSQIAGKRLNH 665
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
+ +K G V VKL+ +D+G++RL + + E AE PP
Sbjct: 666 PNEALKEGQEVWVKLLGFDDRGKVRLGMKMVDQETGAELPP 706
>gi|384482469|pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
gi|384482470|pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
gi|384482471|pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 438/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNYQE+
Sbjct: 14 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTF 73
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 74 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDI 133
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ LS P I RVG V +++NPT EM++S++DL++AG+ DA++M
Sbjct: 134 LGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADAVMM 193
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V ++ + + + L E K P+ D IK
Sbjct: 194 VESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDAIK------ 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++++ G ++ +I+ K R +A+ + ++K + L
Sbjct: 248 -AKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALG-------------------- 286
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L DE+ P + + + +FKE+ + +RR I++ G
Sbjct: 287 LSDEN--------------------------PTGYDPLKLGAIFKELEADVVRRGILDTG 320
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 321 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 380
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ DFPYTIR+ S IT
Sbjct: 381 -ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEIT 439
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 440 ESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFA------VLSDILGDED 493
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+T+ QMDIK+ GIT +M++AL QAK+GR HIL EM K P
Sbjct: 494 HLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRA 553
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ AP I + + +KI +IGSGGK ++ I+ TG + +D DDG VK++A D + +
Sbjct: 554 DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAK-VDINDDGVVKVSASDGAKI 612
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T VG IY +K + +G FV ++GL H+S++S+ +AK D
Sbjct: 613 KAAIDWIKSITDEAEVGKIYDGKVVK-VVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 671
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 672 VLKEGQMVKVKLLGFDDRGKTKLSMKVV 699
>gi|228902310|ref|ZP_04066467.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|434376910|ref|YP_006611554.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
gi|228857279|gb|EEN01782.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 4222]
gi|401875467|gb|AFQ27634.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-789]
Length = 712
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I IM + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIIIMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|422415828|ref|ZP_16492785.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
J1-023]
gi|313623917|gb|EFR94027.1| polyribonucleotide nucleotidyltransferase [Listeria innocua FSL
J1-023]
Length = 723
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/750 (40%), Positives = 440/750 (58%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L ++ E +G V I +++E ++
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEEVKEEILESYKAKELENEAEILGEVAHILEMIEKDE--- 306
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+RR I + R DGR
Sbjct: 307 -------------------------------------------MRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L +E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGL-GTEEYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ + L QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQIXXXXLTQAKEGRLHILEHLTSTISEPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +IIEETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIEETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDHQGRVNLSRKALLEKKEQPEGD 704
>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575939|sp|Q3ABA6.1|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 731
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 325/781 (41%), Positives = 459/781 (58%), Gaps = 79/781 (10%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q + +I R + + G + QASG+V V+ G+T++ + + P E DFFPL V+
Sbjct: 6 QILEKEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVD 65
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y+ERF A G+ GGF KREGR + +L RLIDRP+RP KGF ++ I++ VLS +
Sbjct: 66 YEERFYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQ 125
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ P+ A+ A A+ LS +P I V VGLV D+ ++NPT ++ E S+L L++AG+
Sbjct: 126 DNPPEIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGT 185
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E + EE++I+A+ G + V++I ++ E + +KL L
Sbjct: 186 RDAVMMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFRE--------EALKLG---L 234
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSE-------NGYVS---KDET 377
K E+ EE ++K + +A L+E + I++E + Y+ K+ T
Sbjct: 235 AKEKMEVVVEEKA---ELKEAVTA-EAYPLLKEAIEKIIAEKFNKQERDEYLENLKKELT 290
Query: 378 VGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSK 437
+ET P+ E+ +K + + +
Sbjct: 291 TKFLETYPE------------------------------------EELTIKGILDSIQKE 314
Query: 438 FLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQ 497
+R++I++ G R DGR D +RPI GLLPR HGS LFTRG+TQ L+++TLG Q
Sbjct: 315 IVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQ 374
Query: 498 RIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFP 557
+D+L +E KRF Y+FPP SVGEV + P RREIGHG LAERALEPV+P + FP
Sbjct: 375 ILDDL-GIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPPEEVFP 433
Query: 558 YTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPL 617
YTIR+ S + ESNGS+SM SVCG LAL DAGVPIK +AGVAMG++ + DE
Sbjct: 434 YTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVA------ 487
Query: 618 ILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAE 677
IL+DI G EDA GDMDFKVAG +DGITA QMDIK+ G+T ++ KAL QA++GR HIL +
Sbjct: 488 ILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGK 547
Query: 678 MLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTV 737
ML+ P LS +AP I V PEKI IIG GGK +K II+ETGV+ ID EDDG +
Sbjct: 548 MLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVK-IDIEDDGRI 606
Query: 738 KITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA------PGREGL 791
I A D + EK+ II NLT VG +Y ++ IA +G FVE+ PG+EGL
Sbjct: 607 FIAAVDKEAGEKALNIIENLTKEIEVGKVYLG-KVTRIADFGAFVEVVPGVLGLPGKEGL 665
Query: 792 CHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA---ENPPVKL 848
HIS+L+ + + + EDVVK GD + VK I +++G+L+LSR+ +P + +NPP+
Sbjct: 666 VHISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKDAIPAEEVREKKNPPIHK 725
Query: 849 P 849
P
Sbjct: 726 P 726
>gi|429207254|ref|ZP_19198513.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. AKP1]
gi|428189629|gb|EKX58182.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sp. AKP1]
Length = 716
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/761 (40%), Positives = 433/761 (56%), Gaps = 73/761 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA G+V T GET + +V A DFFPL V+YQER+
Sbjct: 9 IEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP I RVG G ++++NP +M+ + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQRLDLVIAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV+ G +A++ + + + E + PP+
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAH----EPFDFSPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ + ++ I+ K R A+ + + LSE DE +G
Sbjct: 245 AALYAKVKSLGETQMRAAFAIREKQDRVNAIDAARSAIKAQLSEAELA--DENLGTA--- 299
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
FK++ S LR I+
Sbjct: 300 ----------------------------------------------FKKLESSILRGDII 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
GG R DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID L
Sbjct: 314 NGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NSR-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGKWAVLTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHILGEMSKAL-S 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+NS S +AP I + + +KI +IGSGGK ++ I+E +G + +D DDG +KI + D
Sbjct: 547 SANSFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASNDQ 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++++K+ +I ++ P G IY +K + +G FV R+GL H+S++++ L
Sbjct: 606 AAIKKAYDMIWSIVAEPEEGQIYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANKRLTH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
+V+K G V VKL+ +++G++RL + + E E P
Sbjct: 665 PNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIQP 705
>gi|418646120|ref|ZP_13208235.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-55]
gi|421150225|ref|ZP_15609881.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443639762|ref|ZP_21123763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21196]
gi|375021586|gb|EHS15082.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-55]
gi|394329615|gb|EJE55717.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443406413|gb|ELS64993.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21196]
Length = 698
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/749 (41%), Positives = 453/749 (60%), Gaps = 67/749 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIE-GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
M+E G C+ +EML +A+ G + E++ LV+ ++ H+
Sbjct: 188 MVEAGACEITEQEML-EAIFFGHE-------EIQRLVDF-------------QQQIVDHI 226
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPD 386
+ + +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 227 QPVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNE 281
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 282 FIDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADE 316
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++
Sbjct: 317 KIRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEE 376
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
E KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 377 E-KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G E
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGME 489
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
DA GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 490 DALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPR 549
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 550 TELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAM 608
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ +++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K E
Sbjct: 609 INRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVE 667
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DV+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 668 DVLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|421558651|ref|ZP_16004529.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
gi|402337394|gb|EJU72642.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
Length = 706
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|387142882|ref|YP_005731275.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
gi|418281437|ref|ZP_12894248.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21178]
gi|418955487|ref|ZP_13507427.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-189]
gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
gi|365165259|gb|EHM57087.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21178]
gi|375370970|gb|EHS74762.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-189]
Length = 698
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DAI
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAIN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|304396352|ref|ZP_07378233.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|440758706|ref|ZP_20937865.1| Polyribonucleotide nucleotidyltransferase [Pantoea agglomerans
299R]
gi|304355861|gb|EFM20227.1| polyribonucleotide nucleotidyltransferase [Pantoea sp. aB]
gi|436427634|gb|ELP25312.1| Polyribonucleotide nucleotidyltransferase [Pantoea agglomerans
299R]
Length = 711
Score = 543 bits (1400), Expect = e-151, Method: Compositional matrix adjust.
Identities = 315/772 (40%), Positives = 441/772 (57%), Gaps = 66/772 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKSKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGRIPGSFFRREGRPSEGETLISRLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+ALS +P + I RVG + D++++NPT E++ S+LDL++AG+
Sbjct: 123 QVHPDIVAMMGASAALALSGLPFNGPIGAARVGYINDQYVLNPTADELKQSRLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E + LSEE ++ AV G D + + + ALV GKP+ + L
Sbjct: 183 QNAVLMVESEAEILSEEQMLGAVVFGHDQQQIVIENINALVAEAGKPRWDWQPEAANTAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A + +I +K R + V KDET+ + L
Sbjct: 243 ISRVAALAEARISDAYRITDKQERYTQVG---------------VIKDETIAAL-----L 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
EDE D + D + + +R RI+ G
Sbjct: 283 AEDETLDGSEIGD-----------------------------IVHSLEKTVVRTRILNGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGS+LFTRGETQ+L TLG + AQ +D L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSSLFTRGETQALVTATLGTTRDAQNLDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P DFPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKAEDFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M++AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALNQAKGARLHILGVMEQAISTPRT 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI A D L
Sbjct: 547 EISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATD--GL 603
Query: 748 EKSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +AI I +T VG +Y + ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 604 KAKEAIRRIEEITAEIEVGRVY-SGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDA 857
D +++G V VK++EV+ +G++RLS + EA P + T DA
Sbjct: 663 TDYLQMGQEVPVKVMEVDRQGRVRLS----IKEATESKPQTEEAAAVITPDA 710
>gi|386732069|ref|YP_006205565.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
07PF0776]
gi|384390827|gb|AFH79897.1| polynucleotide phosphorylase/polyadenylase [Listeria monocytogenes
07PF0776]
Length = 723
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/750 (41%), Positives = 447/750 (59%), Gaps = 61/750 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ + + VE G + +QASGA + G+T++ T+ + P P DFFPL VNY+E+ +
Sbjct: 11 WAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPR-PGDFFPLTVNYEEKMYSV 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR D L RLIDRP+RP +GF +E QI S V S D P+ A
Sbjct: 70 GKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG + K+++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 130 MLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE +++A+ G + ++ + + ++ GK K + + PEL V+ +
Sbjct: 190 AGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAAS 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
++ ++ + K R A+ ++E++L Y +K+ LE+E E
Sbjct: 250 EGKMKAAIKTEEKKAREAAIEDVKEEIL-----ESYKAKE------------LENEAE-- 290
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ +EV + + + +RR I + R DGR
Sbjct: 291 -------------------------ILNEV--AHILEMIEKDEMRRLISQDKIRPDGRKV 323
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+ IRP+SS G+LPR HGS LFTRG+TQ+L+V TL + Q ID L ++ E KRF Y
Sbjct: 324 NEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTE-EYKRFMHHY 382
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G AP RREIGHG L ERAL+ V+PS+ +FPYTIR+ S + ESNGSSS
Sbjct: 383 NFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQ 442
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LA+ DAGVPIK +AG+AMG+V + G D T ILSDI G ED GDMDFK
Sbjct: 443 ASICGSTLAMLDAGVPIKAPVAGIAMGLV----KLGDDYT--ILSDIQGMEDHFGDMDFK 496
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ G++ ++ +AL QAK+GR HIL + P LS +AP
Sbjct: 497 VAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPK 556
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I + +KPEKI +IG GGK++ +II+ETGV+ ID E DGTV I ++D + K+ AII
Sbjct: 557 IITLNIKPEKIKDVIGPGGKQINAIIDETGVK-IDIEQDGTVYIASQDQAMNRKAIAIIE 615
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y +++ I +G FVE+ G +GL HISEL+ + K ED++K+GD V
Sbjct: 616 DIVREVEVGEVY-TGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEV 674
Query: 816 DVKLIEVNDKGQLRLSRRALL-----PEAD 840
VK+IEV+ +G++ LSR+ALL PE D
Sbjct: 675 TVKVIEVDQQGRVNLSRKALLEKKEQPEGD 704
>gi|20807834|ref|NP_623005.1| polynucleotide phosphorylase [Thermoanaerobacter tengcongensis MB4]
gi|81481549|sp|Q8RA43.1|PNP_THETN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|20516395|gb|AAM24609.1| Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Thermoanaerobacter tengcongensis MB4]
Length = 707
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/754 (41%), Positives = 448/754 (59%), Gaps = 60/754 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R+++V+TG + +QA+GA V G+T++ + C + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLVVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP +G+ ++ Q+++ VLS D
Sbjct: 65 RLYSIGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPEGYRNDVQVIATVLSVDPDAQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V VGLV KF++NPT ++ E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFNGPTGSVAVGLVDGKFVINPTYEQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE ++ A+ +++I ++ +V+ G PK + EL +
Sbjct: 185 IVMVEAGAKEVPEETILDAIVYAHQYIKQIVEFIEGIVKEVGVPKAEVVLHEIDKELEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A E++ L+ K R L +E++VL KDE PD L D
Sbjct: 245 VRAYATEKIYNALRTPEKKERNDNLDKVEQEVLEHF-------KDEY-------PDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V ++ + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYKIMKEQMRKMIKEEKIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q ++ + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGAIGDIQILEGI-GDEEFKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG LAERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AG+AMG++ + DE LIL+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGIAMGLIKEEDEV------LILTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E G+TA QMDIK+ GI +++ AL++A+ R ++L +ML+ P LS
Sbjct: 488 DMDFKVAGTEKGVTAIQMDIKIPGIDRDILQMALEKARKARLYVLQKMLEVIKEPRKELS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
K+AP + M V PEKI IIG GK + II ETGV+ ID E+DG + ITA +L + E++
Sbjct: 548 KYAPRVVRMVVNPEKIRDIIGPAGKTITKIISETGVK-IDIEEDGRLYITAPNLEAGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T VG IY ++ IAP+G FVEIAPG+EGL HIS LS + + EDVVK
Sbjct: 607 KQMIEAITKDIEVGGIYLG-KVLRIAPFGAFVEIAPGKEGLVHISNLSKKRVRRVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLP-EADAEN 843
VGD + VK+ E++ G++ LSR+ +P E +++N
Sbjct: 666 VGDNILVKVTEIDKLGRIVLSRKDAMPDEEESDN 699
>gi|114332122|ref|YP_748344.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas eutropha
C91]
gi|122313196|sp|Q0AE53.1|PNP_NITEC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|114309136|gb|ABI60379.1| 3' exoribonuclease [Nitrosomonas eutropha C91]
Length = 705
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/759 (40%), Positives = 444/759 (58%), Gaps = 67/759 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP-SDFFPLNV 146
+P+ I +G + +ETG + +QA GAV V+ + + + D ++P DFFPL V
Sbjct: 2 KPIKKSITYGHHTLTIETGEIAKQAHGAVMVS-MDDTVVLVTVVGDKKTKPGQDFFPLTV 60
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQE+F +AGR G FFKREGR + E+L RLIDRP+RP GFY+E Q+++ VLS D
Sbjct: 61 DYQEKFYSAGRIPGSFFKREGRPSEKEILTSRLIDRPIRPLFPDGFYNEVQVIAMVLSSD 120
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
D A A A+ LS +P I RVG + +++++NPTT ++ SQL+L++AG
Sbjct: 121 AEIDADIPATIGASAALILSGIPFDGPIGAARVGYIDNEYVLNPTTTQLNKSQLNLVVAG 180
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+ A+LM+E + LSE++++ AV G D ++++ N + L + G + P E
Sbjct: 181 TQKAVLMVESEANELSEDVMLGAVTYGHDQMQQVINMINELADETG----VTAWDWQPAE 236
Query: 327 ----LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
L + + ++A +L ++K K R +A+S + ++V T L
Sbjct: 237 KDHSLIEKITQLAEADLRDAFRLKQKSVRTEAISEIWQRVFTELKAG------------- 283
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
+EG SE +K + + +K +R
Sbjct: 284 --------------------TEEGP---------------SEQTIKEIGFALEAKIVRNS 308
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I++G R DGR +RPI+ R G+LPR HGSALFTRGETQ+L V TLG + Q+ID L
Sbjct: 309 ILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALVVTTLGTARDEQKIDAL 368
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ D +RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL VLP +F Y +RV
Sbjct: 369 QGDYS-ERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALLAVLPPVEEFGYAMRV 427
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S +TESNGSSSMASVCGGCLAL DAG P+K +AG+AMG++ + + F +L+DI
Sbjct: 428 VSEVTESNGSSSMASVCGGCLALMDAGAPLKAHVAGIAMGLIKEGNRFA------VLTDI 481
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG E+GITA QMDIK+ GIT +M+ AL QAK+GR HIL M +
Sbjct: 482 LGDEDHLGDMDFKVAGTEEGITALQMDIKIQGITKEIMQVALLQAKEGRLHILDIMKQSL 541
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P +S+S HAP I K+ PEKI +IG GG ++++ EETG ID DDG+V I +
Sbjct: 542 PIARDSVSVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGT-TIDISDDGSVTIASI 600
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
E++K I N+T VG IY +K + +G V I PG++GL HIS++++ +
Sbjct: 601 SNEGGEQAKRRIENITADVEVGKIYEGTVLK-LLDFGAIVSILPGKDGLLHISQIANERV 659
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D +K G ++ VK++E +DKG+LRLS +A EA A
Sbjct: 660 ESVADHLKEGQIIRVKVLEADDKGRLRLSMKAASTEAAA 698
>gi|21674467|ref|NP_662532.1| polynucleotide phosphorylase [Chlorobium tepidum TLS]
gi|81790880|sp|Q8KBY3.1|PNP_CHLTE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21647655|gb|AAM72874.1| polyribonucleotide nucleotidyltransferase [Chlorobium tepidum TLS]
Length = 733
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/768 (41%), Positives = 449/768 (58%), Gaps = 54/768 (7%)
Query: 93 KIPFGDRQIL-VETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNYQE 150
KI G +++ +ETG M +QA G+ VT +T++ +V + P P+ DFFPL V Y+E
Sbjct: 6 KIDLGHGKVITIETGKMAKQADGSAVVTMNDTMVLATVVSSKTPPSPNQDFFPLQVEYRE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++SAAG+ GGFFKREGR + E+L RLIDR LRP G+Y ETQI+ V+S D ++
Sbjct: 66 KYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISSDTIND 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
D L AA A+ +S++P + ++ VRVG + FIVNP E+ S +D+ + G++D
Sbjct: 126 ADVLGGIAASAAIMVSDIPFANPMSEVRVGRINGLFIVNPDINELAQSDMDICIGGTEDT 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I M+EG +SE ++ A++ G DA+++I + L KPK + + P EL
Sbjct: 186 ICMLEGEMKEISEAEMLDAIKFGHDAIKKICALQRELAAEVAKPKRPFSPTVAPDELVNF 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
VEE EL K L +A EK I ++ + K T PD +E
Sbjct: 246 VEEHCSAEL-KALAYTPLAKEERA-----EKTKAIYTQT--IRKTLTHFTDRVGPDQIE- 296
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ ++ +E ++ V K +R I++ G+R
Sbjct: 297 -----------------------ADPTSAFCLNEHMIEECIHAVEKKVMRHMILDDGKRL 333
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RPIS GL+PRAHGSALFTRGETQ+L +TLG K+ AQ +D L +DD+ KR
Sbjct: 334 DGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDTL-TDDKDKR 392
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE+GR+G RREIGHG LAERA++ V+PS+ +FPYT+R+ S I ESN
Sbjct: 393 FMLHYNFPPFSVGEIGRVGGAGRREIGHGNLAERAIKMVMPSEQEFPYTVRLVSDILESN 452
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGG LA D G+P+K ++G+AMG++ + D + +LSDI G+ED G
Sbjct: 453 GSSSMASVCGGTLAAMDGGIPLKKPVSGIAMGLIKEGDRYA------VLSDILGNEDHLG 506
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG DGITA QMDIK+ G+ +++ AL+QA+ GR HIL M + P +
Sbjct: 507 DMDFKVAGTRDGITACQMDIKIDGLDYHILETALEQARKGRLHILDVMAEAIPESRADIG 566
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
K+AP + +++ + I ++IG GG+ ++SI EETG E I+ +DDGTV I + + +
Sbjct: 567 KYAPRLTTIQIPVDAIGMVIGKGGETIRSITEETGAE-INIDDDGTVTIACSSPEATKAA 625
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIA-PYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
I L P VG IY +++ I G FVE P +GL HISE++ +AK DV+
Sbjct: 626 VETIKTLVSKPEVGTIYMG-KVRDIRDELGAFVEFLPKTDGLVHISEIARERIAKVSDVL 684
Query: 810 KVGDLVDVKLIEVND-----KGQLRLSRRALL-----PEADAENPPVK 847
KVGD + VKLI+V K + LS +ALL E + E P +
Sbjct: 685 KVGDRIKVKLIDVRKDPRTGKTKFALSIKALLDTDQQAETNGEAKPAR 732
>gi|77464694|ref|YP_354198.1| polynucleotide phosphorylase [Rhodobacter sphaeroides 2.4.1]
gi|126463534|ref|YP_001044648.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
ATCC 17029]
gi|332559587|ref|ZP_08413909.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
WS8N]
gi|123590859|sp|Q3IYT7.1|PNP_RHOS4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611277|sp|A3PNG0.1|PNP_RHOS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77389112|gb|ABA80297.1| polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
2.4.1]
gi|126105198|gb|ABN77876.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
ATCC 17029]
gi|332277299|gb|EGJ22614.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
WS8N]
Length = 716
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/761 (40%), Positives = 433/761 (56%), Gaps = 73/761 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA G+V T GET + +V A DFFPL V+YQER+
Sbjct: 9 IEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP I RVG G ++++NP +M+ + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQRLDLVIAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV+ G +A++ + + + E + PP+
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAH----EPFDFSPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ + ++ I+ K R A+ + + LSE DE +G
Sbjct: 245 AALYAKVKSLGETQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELA--DENLGTA--- 299
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
FK++ S LR I+
Sbjct: 300 ----------------------------------------------FKKLESSILRGDII 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
GG R DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID L
Sbjct: 314 NGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NSR-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGKWAVLTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHILGEMSKAL-S 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+NS S +AP I + + +KI +IGSGGK ++ I+E +G + +D DDG +KI + D
Sbjct: 547 SANSFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASNDQ 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++++K+ +I ++ P G IY +K + +G FV R+GL H+S++++ L
Sbjct: 606 AAIKKAYDMIWSIVAEPEEGQIYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANKRLTH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
+V+K G V VKL+ +++G++RL + + E E P
Sbjct: 665 PNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIQP 705
>gi|372279158|ref|ZP_09515194.1| polynucleotide phosphorylase/polyadenylase [Oceanicola sp. S124]
Length = 710
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/752 (40%), Positives = 440/752 (58%), Gaps = 73/752 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ +GD + +ETG + RQA G V T GET + +V A E DFFPL V+YQE++
Sbjct: 8 EMQWGDETLTLETGKVARQADGTVIATLGETSVMANVTFAKKQKEGQDFFPLTVHYQEKY 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKRE R + E L RLIDRP+RP GF +E ++ VLS+D + PD
Sbjct: 68 YAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFAPGFKNEVLVMCTVLSHDLENDPD 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAG 266
+A+ AA A+ +S P IAG RVG V ++++NP+ +M+ + +LDL++AG
Sbjct: 128 VVAMIAASAALTISGAPFMGPIAGCRVGFVDGEYVLNPSVDDMQGLRNNPEQRLDLVVAG 187
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+ A++M+E L+E+ ++ AV + ++ + + + +L E K + + PP+
Sbjct: 188 TKGAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIVSLAEETAK----EPFEFTPPD 243
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
LY V+ +++ I +K R A+++++E++ L+E
Sbjct: 244 YSALYDAVKAAGEDKMRAAYAITDKQERTSAVAAVKEEIQAALTEE-------------- 289
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
++ ++ K++ S LR +
Sbjct: 290 -------------------------------------QLADANLGSALKKLESTVLRGDV 312
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
V+ G+R DGR D +RPI + GLLPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 313 VKNGKRIDGRRTDEVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALH 372
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIR+
Sbjct: 373 GNFK-SNFMLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRIV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCGG L++ DAGVP+K ++AGVAMG+VL+ DG+ +L+DI
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLED-----DGSYAVLTDIL 486
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG +GIT+ QMDIKV GIT +MK AL QAK+GR HIL EM K
Sbjct: 487 GDEDHLGDMDFKVAGTAEGITSLQMDIKVQGITPEIMKTALAQAKEGRLHILGEMNKALD 546
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + D
Sbjct: 547 GAAE-FSAHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGIIKIASSD 604
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+++K+ +I ++ P G +Y+ +K + +G FV R+GL H+S++ + L
Sbjct: 605 AEAIQKAHDMIYSIVAEPEEGKVYKGKVVK-LVDFGAFVNFFGKRDGLVHVSQIENRRLN 663
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DV+K G V VKL+ +D+G++RLS + +
Sbjct: 664 HPSDVLKEGQEVFVKLVGFDDRGKVRLSMKVV 695
>gi|228909631|ref|ZP_04073454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
gi|228849920|gb|EEM94751.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
IBL 200]
Length = 712
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVNADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|418403914|ref|ZP_12977390.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
CCNWSX0020]
gi|359502120|gb|EHK74706.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
CCNWSX0020]
Length = 717
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/749 (41%), Positives = 444/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ +A+
Sbjct: 127 DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVAGTQEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + V L E+ K P+ + PE +
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFN------PEDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA +EL +I K R A+ +++ KV
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKE---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ P +E ++ VFK + +K +R I++
Sbjct: 279 ----------------------HFLPEGVEN-PAHTAE-EIAAVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI + G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 375 K-ENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG + GIT+ QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTDAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ +DDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIDDDGTVKIASASAKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|385809228|ref|YP_005845624.1| Polyribonucleotide nucleotidyltransferase [Ignavibacterium album
JCM 16511]
gi|383801276|gb|AFH48356.1| Polyribonucleotide nucleotidyltransferase [Ignavibacterium album
JCM 16511]
Length = 704
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/749 (41%), Positives = 445/749 (59%), Gaps = 61/749 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G + +ETG RQA+GAV V G+T++ + ++ + DFFPL V Y+E+
Sbjct: 7 EVEIGGKLFSIETGRYARQANGAVMVRYGDTMVLVTAVASEDVKDDQDFFPLQVEYREKT 66
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
SAAG+ GG+ KREGR + E+L RL DRP+RP K F +ETQ+++ VLSYDG + D
Sbjct: 67 SAAGKIPGGYIKREGRPTEKEILSARLCDRPIRPLFPKNFMNETQVIAMVLSYDGENDAD 126
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA A A+ +S++P + VRVG V +F++NPT Q++E S ++L++AG+ D+I+
Sbjct: 127 VLAACGASAALTISDIPFDGPMGEVRVGRVDGQFVINPTHQQLEVSDMELVVAGTSDSIM 186
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+EG LSE +++A++ Q +R+I L + GK K + K+ L V
Sbjct: 187 MVEGEAKELSESEMLEALRFAQTEIRKIVELQLELQKEAGKQKWIVPEKVIDENLKNDVN 246
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKD-ETVGIVETIPDLLEDE 391
E+A E+L + V ++L++ +K+ E V+T L E
Sbjct: 247 ELALEKLKSI-------------------VYSVLTKEERSAKNKELAEFVKT--SLAEKY 285
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E E+V+ + + ++ + +R+RI+ G R D
Sbjct: 286 PEQEKVIAE-----------------------------LLHDMEKELMRQRILTEGIRLD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI+ LLPR HGSALFTRGETQSL +TLG K Q +D L + K+F
Sbjct: 317 GRKTTDIRPITIETSLLPRTHGSALFTRGETQSLTTVTLGTKNDEQLVDGL-LQEYTKKF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGEVGR+ SRREIGHG LAER+L+ V P+++ FPYT+RV S I ESNG
Sbjct: 376 MLHYNFPPFSVGEVGRLTGVSRREIGHGNLAERSLKQVFPAEDVFPYTVRVISDILESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VC G LA+ DAG+PIK +++G+AMG+V + +++ ILSDI G+ED GD
Sbjct: 436 SSSMATVCAGSLAMMDAGIPIKAAVSGIAMGLVKEGEQYA------ILSDILGNEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG GIT QMDIK+ GI+ +M+KAL QAK+GR IL M + P LS
Sbjct: 490 MDFKVAGTSKGITGLQMDIKIQGISFEIMEKALAQAKEGRMKILEIMNQAIAEPRPHLSP 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP + MK+ ++I L+IG GGK ++ + GVE + ++DGTV I + + + +K K
Sbjct: 550 YAPRLITMKIDTDQIGLVIGPGGKTIQGMQRLFGVEIV-IDEDGTVNIASPNRENAQKCK 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT P VG++Y + I +G FVEI PG+EGL HIS++ + + K D KV
Sbjct: 609 EYIKKLTATPEVGEVYEGV-VTKIMDFGAFVEILPGKEGLLHISQIDNKRVNKVSDYFKV 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
GD V VKL+++ D G+L LSR+ +L ++
Sbjct: 668 GDKVLVKLMKIED-GKLSLSRKEVLNNSE 695
>gi|397660147|ref|YP_006500849.1| Polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca E718]
gi|394348219|gb|AFN34340.1| Polyribonucleotide nucleotidyltransferase [Klebsiella oxytoca E718]
Length = 712
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/744 (40%), Positives = 434/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 63 YQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS +P + I RVG + D++++NPT +E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKSSKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E + LSE+ ++ AV G D + + + LV+ GKP+ ++ L
Sbjct: 183 EAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINDLVKEAGKPRWDWQPEVVDAAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V +A L +I +K R + ++ + + L V++DE +
Sbjct: 243 NARVAVLAESRLSDAYRITDKQERYAQVDVIKSETIATL-----VAEDEAL--------- 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D +E E+ + +R R++ G
Sbjct: 289 --DANELGEI---------------------------------LHAIEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ +FPYT+RV S IT
Sbjct: 373 TDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVP+K ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GI+A QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP IH +K+ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D
Sbjct: 547 DISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 QHAIRRIEEITAEIEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVLEVDRQGRVRLS 688
>gi|149189790|ref|ZP_01868071.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
gi|148836439|gb|EDL53395.1| polynucleotide phosphorylase/polyadenylase [Vibrio shilonii AK1]
Length = 713
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/779 (40%), Positives = 447/779 (57%), Gaps = 72/779 (9%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKSFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E+S+LDL++A
Sbjct: 122 NPNVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELENSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + +KA+ E + + P
Sbjct: 182 GTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVV---IKAINEFAAEVATPAWDWVAPE 238
Query: 326 E---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
E L + E+A +LV+ QI K+ R + ++ +V +L
Sbjct: 239 ENTALNNRIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVL---------------- 282
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
L ED E + ++H +F ++ +RR
Sbjct: 283 ----LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRS 309
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I+ G R DGR D +R + R G+LPR HGS+LFTRGETQ++ TLG ++ AQ ID L
Sbjct: 310 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDEL 369
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV
Sbjct: 370 TGERK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPYTVRV 428
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI
Sbjct: 429 VSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDI 482
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAI 542
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
+S+ AP IH MK+ +KI +IG GG ++ + EETG I+ EDDGT+KI A
Sbjct: 543 SGAREEISEFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAAT 601
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D + + A I +T VG IY ++ +A +G FV + PG++GL HIS+++ +
Sbjct: 602 DGDQAKDAIARIEAITAEVEVGKIY-TGKVARLADFGAFVTVLPGKDGLVHISQIAHERV 660
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASD 861
K D +K G V VK++E++ +G++RLS + + E P K P D + +ASD
Sbjct: 661 EKVTDYLKEGQEVQVKVLEIDRQGRVRLSMKEAM-----EKPEAKAPAAD---ENSASD 711
>gi|89056519|ref|YP_511970.1| polynucleotide phosphorylase [Jannaschia sp. CCS1]
gi|123094095|sp|Q28K17.1|PNP_JANSC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|88866068|gb|ABD56945.1| Polyribonucleotide nucleotidyltransferase [Jannaschia sp. CCS1]
Length = 706
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/759 (41%), Positives = 445/759 (58%), Gaps = 67/759 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V +I +G+ + +ETG + RQA G+V T GET + +V A P DFFPL V+YQ
Sbjct: 5 VKKEIQWGEETLTLETGRVARQADGSVIATLGETSVMANVTFAKSPKPGMDFFPLTVHYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF +ET ++ VLS+D ++
Sbjct: 65 EKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNETLVMCTVLSHDLVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLL 263
PD +A+ AA A+ +S P IAG RVG ++I+NP +M D +LDL+
Sbjct: 125 DPDMVAMIAASAALTISGAPFRGPIAGCRVGFEDGEYILNPEIDDMHDLRNNPEQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E L+E ++ AV+ D+++ + + + L E K + D
Sbjct: 185 VAGTKDAVMMVESEAYELTEAEMLGAVKFAHDSIQPVIDLIIDLAEDAAK-EPFDFQAPD 243
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
EL++ V+ +++ + I +K+ R+ A+S+++E V LSE
Sbjct: 244 YSELFEAVKAAGEDKMREAYAITDKLERQAAVSAVKEGVKEGLSE--------------- 288
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
+ LED + + K++ S LR +
Sbjct: 289 --EQLEDPN----------------------------------LSAALKKLESTVLRSDV 312
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
V+ GRR DGR D +R I S +LPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 313 VKNGRRIDGRALDEVRDIVSETKVLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALH 372
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ + F L Y+FPP SVGE GR+G P RREIGHG LA RAL+ VLP+ DFPYT+RV
Sbjct: 373 GNFK-SNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL+ DG+ IL+DI
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED-----DGSYGILTDIL 486
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG E GIT+ QMDIKV GIT +M+KAL+QAK GR HILAEM K
Sbjct: 487 GDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITQEIMEKALEQAKAGRLHILAEMAKAV- 545
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+ S+HAP I M++ +KI +IGSGGK ++ I+E +G + +D D+G +KI + +
Sbjct: 546 TEAGEFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKIASPN 604
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
S++K+ +I ++ P G IY+ +K I +G FV R+GL H+S++ + L
Sbjct: 605 GDSIQKAYDMIHSIVAEPEEGKIYKGKVVK-IVDFGAFVNFFGKRDGLVHVSQIKNERLN 663
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DV+ G V VKL+ +D+G++RL+ + + E E
Sbjct: 664 HPSDVLSEGQEVWVKLLGFDDRGKVRLAMKMVNQETGEE 702
>gi|261419469|ref|YP_003253151.1| polynucleotide phosphorylase/polyadenylase [Geobacillus sp.
Y412MC61]
gi|319766284|ref|YP_004131785.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC52]
gi|375008241|ref|YP_004981874.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|261375926|gb|ACX78669.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC61]
gi|317111150|gb|ADU93642.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp.
Y412MC52]
gi|359287090|gb|AEV18774.1| Polyribonucleotide nucleotidyltransferase [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 723
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 318/756 (42%), Positives = 456/756 (60%), Gaps = 60/756 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R ++VETG + +QA+GA V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDVAGRPLIVETGELAKQANGAALVRYGDTVVL-STATASREAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +LV RLIDRP+RP +GF +E Q++S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V +F++NPT ++ME S L L++AG+ DAI M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + V+ + + + GK KM + P P L + +
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ + +Q+ K+ R A+ ++ G ++K E E+
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVK---------AGVIAK-------------YEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE K ++ +L KLV +EV RR I R DGR
Sbjct: 287 DEE----------------KLKQVQEILH-----KLVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L+ + E KRF
Sbjct: 321 KVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLE-ESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++AL QA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I IM + P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ D ++ +K+K I
Sbjct: 554 PKILIMHINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVDEAANQKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG +Y ++K I +G FVE+ G++GL HISEL+ + K EDVV +GD
Sbjct: 613 IEDIVREVEVGQVYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
+ VK+ E++ +G++ LSR+A+L DA N +LP
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL--RDARNIGGELP 705
>gi|384482465|pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/748 (40%), Positives = 438/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNYQE+
Sbjct: 23 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTF 82
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 83 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDI 142
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ LS P I RVG V +++NPT EM++S++DL++AG+ DA++M
Sbjct: 143 LGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADAVMM 202
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V ++ + + + L E K P+ D IK
Sbjct: 203 VESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDAIK------ 256
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++++ G ++ +I+ K R +A+ + ++K + L
Sbjct: 257 -AKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALG-------------------- 295
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L DE+ P + + + +FKE+ + +RR I++ G
Sbjct: 296 LSDEN--------------------------PTGYDPLKLGAIFKELEADVVRRGILDTG 329
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 330 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 389
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ DFPYTIR+ S IT
Sbjct: 390 -ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEIT 448
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 449 ESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFA------VLSDILGDED 502
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+T+ QMDIK+ GIT +M++AL QAK+GR HIL EM K P
Sbjct: 503 HLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRA 562
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ AP I + + +KI +IGSGGK ++ I+ TG + +D DDG VK++A D + +
Sbjct: 563 DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAK-VDINDDGVVKVSASDGAKI 621
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T +G IY +K + +G FV ++GL H+S++S+ +AK D
Sbjct: 622 KAAIDWIKSITDEAEIGKIYDGKVVK-VVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 680
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 681 VLKEGQMVKVKLLGFDDRGKTKLSMKVV 708
>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis Bt4]
Length = 713
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/761 (41%), Positives = 448/761 (58%), Gaps = 73/761 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKAL--------SSLEEKVLTILSENGYVSKDETVGIVETIPD 386
A EL+ QI++K R L + LEE+ L G VS D+ T+ +
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEEALA----AGTVSADKA-----TVGN 302
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+L D + +K +R +I+ G
Sbjct: 303 ILFD-------------------------------------------LEAKIVRGQILSG 319
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE +
Sbjct: 320 EPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEY 379
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S I
Sbjct: 380 R-DRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEI 438
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G E
Sbjct: 439 TESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDE 492
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + +
Sbjct: 493 DHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAGAN 552
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
LS+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + +
Sbjct: 553 TQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEG 611
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+ ++K I N+T VG +Y +K + +G V + PG++GL HISE+ + +
Sbjct: 612 MAEAKKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDIN 670
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEA--DAENPP 845
D +K G V VK+I+ ++KG++RLS +ALL EA + PP
Sbjct: 671 DYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAGQTDTPP 711
>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|384867841|ref|YP_005748037.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|415683864|ref|ZP_11449066.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
gi|417887009|ref|ZP_12531148.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21195]
gi|418566693|ref|ZP_13131066.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21264]
gi|418582108|ref|ZP_13146186.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597659|ref|ZP_13161181.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21342]
gi|418603113|ref|ZP_13166504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21345]
gi|418891907|ref|ZP_13446022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897812|ref|ZP_13451882.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900682|ref|ZP_13454739.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908985|ref|ZP_13462988.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917069|ref|ZP_13471028.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922856|ref|ZP_13476773.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982187|ref|ZP_13529895.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985856|ref|ZP_13533542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81651256|sp|Q6GHG1.1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
gi|341858431|gb|EGS99221.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21195]
gi|371969963|gb|EHO87401.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21264]
gi|374393721|gb|EHQ65025.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21342]
gi|374393842|gb|EHQ65145.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21345]
gi|377703150|gb|EHT27466.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704468|gb|EHT28777.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705674|gb|EHT29978.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710518|gb|EHT34756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731239|gb|EHT55296.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736179|gb|EHT60209.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750243|gb|EHT74181.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377754023|gb|EHT77933.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760847|gb|EHT84723.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 698
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPTERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/763 (41%), Positives = 453/763 (59%), Gaps = 65/763 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V I R++ +ETG + +QA GA+ T G+T++ + + DF PL V+YQE+
Sbjct: 5 VDIELAGRRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVDYQEK 64
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + EVL RLIDRPLRP +G+Y ETQ+++ VLS D
Sbjct: 65 TYAAGKIPGGYFKREGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASVLSADKTGVS 124
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D + + AA A+A+S +P + IAGV++G V +F+VNP + +E S L L++AG+ DA+
Sbjct: 125 DVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSDLHLVVAGTADAV 184
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+E + L E +++A+++ +++I +++ L ++ GK K + + L + V
Sbjct: 185 MMVEAGANELPEATMLEAIELAHSEIKKIVAKIEELRKLVGKVKRVVVQEAIDAALTEQV 244
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+ + + + I NK R++ L + + ET+ L DE
Sbjct: 245 RALVAGPIREAILIPNKSARQERLDQV---------------------LAETVAKLKSDE 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
P + ++F ++ + EV + L +R+ R+D
Sbjct: 284 --------------------PNRDRHVKIIFHGLE----YTEVRNMILEKRV-----RAD 314
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPI+ G+LPRAHGSA+FTRGETQSLAV+TLG QRID LE + ++ F
Sbjct: 315 GRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQRIDALEGE-YMRTF 373
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE + +P RRE+GHG LAERAL+ ++P + FPYT+R+ S I ESNG
Sbjct: 374 MLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPYTVRIVSEILESNG 433
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG LAL DAGVPIK +AG+AMG++ + D+ L+LSDI G ED GD
Sbjct: 434 SSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQV------LVLSDILGLEDHLGD 487
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKV G ++G+TA QMDIK+GGIT +M++AL QAK GR HIL M + P LS
Sbjct: 488 MDFKVTGTKNGVTALQMDIKIGGITAGLMREALAQAKAGRLHILGCMAQALTEPRTKLSA 547
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I MK+K +KI +IG GGK ++SII ETGV+ I+ ED G V I + D +S +K+
Sbjct: 548 FAPRIFPMKIKQDKIRDVIGPGGKMIRSIIAETGVK-INVEDTGDVTIASSDEASAQKAI 606
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+I LT VG IY ++ I +G FVE+ PG +GL HIS+L+ + + D V
Sbjct: 607 DMIKRLTEEVEVGKIYLGT-VRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKAVTDEVSE 665
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPT 854
GD V VK++E++ +G++RLSR+ +P P P +PT
Sbjct: 666 GDQVMVKVLEIDKQGKIRLSRKEAMP------APAGSPATEPT 702
>gi|339499977|ref|YP_004698012.1| polyribonucleotide nucleotidyltransferase [Spirochaeta caldaria DSM
7334]
gi|338834326|gb|AEJ19504.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta caldaria DSM
7334]
Length = 703
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 318/744 (42%), Positives = 450/744 (60%), Gaps = 60/744 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q VS++I G ++++ETG M +QA+GAV + +VC + E D+ PL V+
Sbjct: 3 QRVSMQI--GGEELVLETGKMAKQANGAVFAQYAGAAVIATVCASSSGEEDLDYVPLTVD 60
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y E++ AAG+ GGF KREGR KD E+LV RLIDRP+RP K F + Q++ +S D
Sbjct: 61 YNEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFDKRFGRDIQVVPTTVSADQ 120
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ PD LA+ A+ AV +S++P + IAGVRV +G++ IVNPT +++ + L++++AG+
Sbjct: 121 VNPPDILAILASSAAVHISDIPFNGPIAGVRVCAIGNELIVNPTYDQIDKADLEIVVAGT 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D I M+EG +SE+++I A++ + + + + L E+ GK K+ P L
Sbjct: 181 RDGITMVEGGGKEVSEDLMIAALEKAHQVIIQFCDLQEKLRELAGKEKL--------PLL 232
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
E VLQ ++ I R+ A ++E K E ++ + D
Sbjct: 233 ----------ESQTVLQNRDAI-RQAAYPRMQEACFV-------KGKHERSAAIKAVKDD 274
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L + ++ DE K K LF E++ ++ LR I+E G
Sbjct: 275 LAAQYAEQLT------DE-------KQLKQFNALFEELEYEI---------LRTSILERG 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR + IRPI+ G+LPR HGSALFTRGETQ+LAV TLG Q D+++ D
Sbjct: 313 IRVDGRGTEDIRPITCEIGVLPRTHGSALFTRGETQALAVTTLGTVFDEQIFDDIDGDKR 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+RF L Y+FPP SVGEVGR+G RREIGHG LA R+LE ++PS +FPYTIRV S I
Sbjct: 373 -ERFILHYNFPPFSVGEVGRLGT-GRREIGHGNLARRSLEAMVPSKEEFPYTIRVVSEIL 430
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCGG L++ AGVP+K +AG+AMG++ D + + +LSDI G ED
Sbjct: 431 ESNGSSSMATVCGGTLSMLHAGVPMKKPVAGIAMGLITDGNRYA------VLSDILGEED 484
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG EDGIT FQMDIK+ G++ +M+KAL QAK GR HIL+ M + P+
Sbjct: 485 HLGDMDFKVAGTEDGITGFQMDIKIAGVSPEIMRKALDQAKRGRLHILSIMNQTLNKPTE 544
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I +K+ +KI +IG GGK +K++ E+ GV I+TE+DGTV I K+ +
Sbjct: 545 KISEFAPKIVSLKIDTDKIGALIGPGGKTIKALCEQYGV-TINTENDGTVTIYGKNAKNA 603
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E ++A + + P VG IY +K I +G FVEI PG+EGLCHIS+LS +A D
Sbjct: 604 EDARAAVIGIVEDPEVGRIYDGV-VKRIMEFGAFVEILPGKEGLCHISKLSRQRIANVTD 662
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
VVK G + VKL+E++ G+L LS
Sbjct: 663 VVKEGQRIPVKLLEIDKMGRLNLS 686
>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 735
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/741 (40%), Positives = 445/741 (60%), Gaps = 53/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD + +ETG + RQASGAV +T++ +V DFFPL V+Y E+ AA
Sbjct: 24 YGDHNVRLETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAA 83
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L RLIDRP+RP +GF++E QI+ VLS + PD +
Sbjct: 84 GRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDIPS 143
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+A+S VP + IA RVG + +++++ P +M+DS+LDL++AG++ A+LM+E
Sbjct: 144 MIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVAGTERAVLMVE 203
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
D LSEE+++ AV G + ++ + + LVE GKP +L + +I
Sbjct: 204 SEADQLSEEVMLGAVMFGHEKMQVVIEAIDELVEEAGKPLWDWAPAERNQQLVALINQIV 263
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
G + + + ++K R + L ++ + V +E V + +L E
Sbjct: 264 GNRIHEAYEHRSKQDRNECLRAIYDDV------------NEKVNAAVEVGELAE------ 305
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E +V + E+ + +R +I+ G R DGR
Sbjct: 306 --------------------------IGENEVANILFEMEAAHVRGKILSGEPRIDGRDT 339
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPRAHGSALFTRGETQ+L V TLG KQ Q +D L + ++ +RF L Y
Sbjct: 340 RTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGL-TGEQRERFMLHY 398
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL VLP++ DF YT+RV S I ESNGSSSM
Sbjct: 399 NMPPFATGETGRVGSPKRREIGHGRLAKRALTAVLPNEEDFQYTMRVVSEICESNGSSSM 458
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCL+L DAGVP+K +AGVAMG++ + ++F +L+DI G ED GDMDFK
Sbjct: 459 ASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFA------VLTDILGDEDHLGDMDFK 512
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG + G+TA QMDIK+ GI+ +M+ AL QAK+GR HIL +M + P LS +AP
Sbjct: 513 VAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHILGKMHEAVEGPKTELSPYAPR 572
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ K+ P+KI +IG GG ++++ EETG + I+ EDDGTV I + D ++ +++ +
Sbjct: 573 LVSFKINPDKIRDVIGKGGAVIRALTEETGTQ-INIEDDGTVTIASVDEAAGAEARRRVE 631
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
L VG +Y +++ + +G V++ PGR+GL HIS+++ + + D +K G V
Sbjct: 632 ELAATVEVGKVYEG-KVQRLLDFGAIVQVLPGRDGLLHISQIAHERVNQVSDYLKEGQTV 690
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
VK++E++DK ++RLS +AL+
Sbjct: 691 RVKVLEIDDKDRIRLSMKALI 711
>gi|384482459|pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
gi|384482460|pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
gi|384482461|pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 438/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNYQE+
Sbjct: 23 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTF 82
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 83 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDI 142
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ LS P I RVG V +++NPT EM++S++DL++AG+ DA++M
Sbjct: 143 LGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADAVMM 202
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V ++ + + + L E K P+ D IK
Sbjct: 203 VESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPEDTDAIK------ 256
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++++ G ++ +I+ K R +A+ + ++K + L
Sbjct: 257 -AKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALG-------------------- 295
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L DE+ P + + + +FKE+ + +RR I++ G
Sbjct: 296 LSDEN--------------------------PTGYDPLKLGAIFKELEADVVRRGILDTG 329
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 330 LRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 389
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ DFPYTIR+ S IT
Sbjct: 390 -ESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEIT 448
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 449 ESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQDGFA------VLSDILGDED 502
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+T+ QMDIK+ GIT +M++AL QAK+GR HIL EM K P
Sbjct: 503 HLGDMDFKVAGTSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRA 562
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ AP I + + +KI +IGSGGK ++ I+ TG + +D DDG VK++A D + +
Sbjct: 563 DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAK-VDINDDGVVKVSASDGAKI 621
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T VG IY +K + +G FV ++GL H+S++S+ +AK D
Sbjct: 622 KAAIDWIKSITDEAEVGKIYDGKVVK-VVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 680
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 681 VLKEGQMVKVKLLGFDDRGKTKLSMKVV 708
>gi|15963997|ref|NP_384350.1| polynucleotide phosphorylase/polyadenylase [Sinorhizobium meliloti
1021]
gi|334318271|ref|YP_004550890.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
AK83]
gi|384531398|ref|YP_005715486.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
BL225C]
gi|407722584|ref|YP_006842246.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
Rm41]
gi|433612032|ref|YP_007188830.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
GR4]
gi|81635311|sp|Q92SW0.1|PNP_RHIME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|15073173|emb|CAC41681.1| Probable polyribonucleotide nucleotidyltransferase [Sinorhizobium
meliloti 1021]
gi|333813574|gb|AEG06243.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
BL225C]
gi|334097265|gb|AEG55276.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
AK83]
gi|407320816|emb|CCM69420.1| Polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
Rm41]
gi|429550222|gb|AGA05231.1| polyribonucleotide nucleotidyltransferase [Sinorhizobium meliloti
GR4]
Length = 717
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/749 (41%), Positives = 444/749 (59%), Gaps = 66/749 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I + R + +ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E LV RLIDRP+RP G+ ++TQ++ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLVSRLIDRPIRPLFPDGYKNDTQVIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ LS VP + G RVG + ++++NP EM++S LDL++AG+ +A+
Sbjct: 127 DVVAMVAASAALTLSGVPFMGPVGGARVGYINGEYVLNPHLDEMDESTLDLVVAGTQEAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L E++++ AV GQ + + + V L E+ K P+ + PE +
Sbjct: 187 LMVESEAKELPEDVMLGAVVFGQKGFQPVIDAVIRLAEVAAKEPREFN------PEDHSA 240
Query: 331 VEE----IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
+E IA +EL +I K R A+ +++ KV
Sbjct: 241 LENAMLSIAEDELRNAYKITEKAARYAAVDAVKAKVKE---------------------- 278
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
H P+ ++ P +E ++ VFK + +K +R I++
Sbjct: 279 ----------------------HFLPEGVEN-PAHTAE-EIAAVFKHLQAKIVRWNILDT 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI + G+LPR HGSALFTRGETQ++ V TLG + Q +D+L
Sbjct: 315 KSRIDGRDLVTVRPIVAEVGILPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMY 374
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ + F L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP+ FPYT+RV S I
Sbjct: 375 K-ENFMLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIHPMLPTAEQFPYTLRVVSEI 433
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVP+ +AG+AMG++ + D F +LSDI G E
Sbjct: 434 TESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEDDRFA------VLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG + GIT+ QMDIK+ GIT +M AL QAK GR HIL EM K
Sbjct: 488 DHLGDMDFKVAGTDAGITSLQMDIKIEGITEEIMGVALNQAKGGRLHILGEMAKAISESR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L + AP I +M + +KI +IGSGGK ++ I+E+TG + I+ +DDGTVKI +
Sbjct: 548 GQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAK-INIDDDGTVKIASASAKE 606
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+E ++ I ++ P VG +Y +K+ A +G FV R+GL HIS+L+S +AK
Sbjct: 607 IEAARKWIHSIVAEPEVGQVYEGTVVKT-ADFGAFVNFFGARDGLVHISQLASERVAKTT 665
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
DVVK GD V VKL+ +++G++RLS + +
Sbjct: 666 DVVKEGDKVWVKLMGFDERGKVRLSMKVV 694
>gi|340027163|ref|ZP_08663226.1| polynucleotide phosphorylase/polyadenylase [Paracoccus sp. TRP]
Length = 716
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/767 (40%), Positives = 440/767 (57%), Gaps = 72/767 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V I +G+ + +ETG + RQA G+V T GET + +V A P DFFPL V+YQ
Sbjct: 5 VKKSIQWGNETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++
Sbjct: 65 EKYYAAGKIPGGFFKREARPSERETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLL 263
PD +A+ AA A+ +S VP I RVG ++++NP +ME+ +LDL+
Sbjct: 125 DPDIVAMIAASAALTISGVPFMGPIGAARVGFANGEYVLNPEVADMENLRGNPEQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E L+E ++ AV+ G +A++ + + + +L E K + +
Sbjct: 185 VAGTRDAVMMVESEAYELTEAEMLGAVKFGHEAMQPVIDLIISLAEEAAK----EPFEFQ 240
Query: 324 PPE---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGI 380
P LY V+ + ++ I++K RR A+ + + K+L LS
Sbjct: 241 APNYSALYDRVKSLGEADMRAAYAIQDKGQRRDAIEATKAKILEGLS------------- 287
Query: 381 VETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLR 440
E+E D P L S K++ S LR
Sbjct: 288 --------EEEQLD------------------------PNLGS------ALKKLESGILR 309
Query: 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
I++G R DGR +RPI G LPR HGS+LFTRGETQ+L V TLG Q ID
Sbjct: 310 GGIIDGRPRIDGRDNRTVRPIDVEVGFLPRTHGSSLFTRGETQALVVTTLGTGDDEQIID 369
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
L + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTI
Sbjct: 370 ALHGNFR-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTI 428
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
RV S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+
Sbjct: 429 RVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEE-----DGRWAVLT 483
Query: 621 DITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
DI G ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QA+DGR HIL EM K
Sbjct: 484 DILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQARDGRMHILGEMSK 543
Query: 681 CSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKIT 740
S HAP I M + +KI +IGSGGK ++ I+E +G + +D DDGT+KI
Sbjct: 544 ALSEGRREFSAHAPRIETMTIPVDKIREVIGSGGKVIREIVETSGAK-VDINDDGTIKIA 602
Query: 741 AKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSN 800
+ + ++ K+ +I ++ P G IY +K + +G FV R+GL H+S++++
Sbjct: 603 SSNADAIRKAHEMIYSIVAEPEEGKIYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANK 661
Query: 801 WLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
L +V+K G V VKL+ +D+G++RL + + E E P K
Sbjct: 662 RLNHPNEVLKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGEEIQPEK 708
>gi|268681650|ref|ZP_06148512.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
gi|268621934|gb|EEZ54334.1| polynucleotide phosphorylase/polyadenylase [Neisseria gonorrhoeae
PID332]
Length = 707
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 438/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T+++ +V E DFFPL V+Y ER AA
Sbjct: 12 YGNQTVTLETGEIARQAAAAVKVSMGDTVVFVAVTTNKEVKEGQDFFPLAVDYLERTYAA 71
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 72 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 131
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 132 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 191
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 192 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 249
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
I GE + + +I+ K R L DE V+
Sbjct: 250 IVGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 279
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 280 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + G+LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 322 DTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 381 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 441 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 494
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 495 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 554 PRLFTMKISQDKIRDVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 613 IEEITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 673 QVVNVKALEVDDRGRVRLSIKALL 696
>gi|117618225|ref|YP_857790.1| polynucleotide phosphorylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|187470961|sp|A0KND9.1|PNP_AERHH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117559632|gb|ABK36580.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 712
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/744 (40%), Positives = 437/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 2 NPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+A+S +P I RVG + ++++NPTT E+ S LDL++AG+
Sbjct: 122 AVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E LSEE+++ AV G + ++ + N + G T L
Sbjct: 182 ANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+A EL + +I K R + + +++ +V+
Sbjct: 242 KAKVAELATAELGEAYRITEKAVRYETIGAIKARVV------------------------ 277
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E+V+ G V+E I + F + S+ +R R+V G
Sbjct: 278 -------EQVIASG-VEEDAKKIGEE-----------------FHSLESRIVRGRVVRGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR + IR +S G+LPRAHGSALFTRGETQ++ V TLG ++ AQ ID L + +
Sbjct: 313 PRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDEL-TGNR 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPY +RV S IT
Sbjct: 372 ADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + + F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QA+ R HIL M + P
Sbjct: 486 HLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH +K+ PEKI +IG GG ++++ EETG I+ +DDGTV+I A D +
Sbjct: 546 EISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTN-IELDDDGTVRIAAVDGDAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ I +T V IY ++ +A +G FV I PG++GL HIS+++ + D
Sbjct: 605 KEAIRRIEAITAEIEVNRIYEGKVVR-LADFGAFVNILPGKDGLVHISQITDARVQNVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+K+GD+V VK++EV+ +G++RLS
Sbjct: 664 YLKIGDVVKVKVLEVDRQGRVRLS 687
>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
Length = 724
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/741 (40%), Positives = 445/741 (60%), Gaps = 53/741 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD + ETG + RQASGAV +T++ +V DFFPL V+Y E+ AA
Sbjct: 13 YGDHNVRFETGEIARQASGAVICDMDDTVVLATVVAKKEIKPGQDFFPLTVDYIEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L RLIDRP+RP +GF++E QI+ VLS + PD +
Sbjct: 73 GRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFFNEVQIIIHVLSVNPEVDPDIPS 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+A+S VP + IA RVG + +++++ P +M+DS+LDL++AG++ A+LM+E
Sbjct: 133 MIAASAALAVSGVPFNGPIAAARVGYINNEYVLCPNLSQMKDSKLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
D LSEE+++ AV G + ++ + + LVE GKP +L + +I
Sbjct: 193 SEADQLSEEVMLGAVMFGYEKMQVVIEAIDELVEEAGKPLWDWAPAERNQQLVALINQIV 252
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
G + + + ++K R + L ++ + V +E V + +L E
Sbjct: 253 GNRIHEAYEHRSKQDRNECLRAIYDDV------------NEKVNAAVEVGELAE------ 294
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E +V + E+ + +R +I+ G R DGR
Sbjct: 295 --------------------------IGENEVANILFEMEAAHVRGKILSGEPRIDGRDT 328
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI R G+LPRAHGSALFTRGETQ+L V TLG KQ Q +D L + ++ +RF L Y
Sbjct: 329 RTVRPIEIRTGVLPRAHGSALFTRGETQALVVTTLGTKQDEQIVDGL-TGEQRERFMLHY 387
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G+P RREIGHG LA+RAL VLP++ DF YT+RV S I ESNGSSSM
Sbjct: 388 NMPPFATGETGRVGSPKRREIGHGRLAKRALTAVLPNEEDFQYTMRVVSEICESNGSSSM 447
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCL+L DAGVP+K +AGVAMG++ + ++F +L+DI G ED GDMDFK
Sbjct: 448 ASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEGNKFA------VLTDILGDEDHLGDMDFK 501
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG + G+TA QMDIK+ GI+ +M+ AL QAK+GR HIL +M + P LS +AP
Sbjct: 502 VAGTDHGVTALQMDIKIEGISKEIMQVALAQAKEGRMHILGKMHEAVEGPKTELSPYAPR 561
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ K+ P+KI +IG GG ++++ EETG + I+ EDDGTV I + D ++ +++ +
Sbjct: 562 LVSFKINPDKIRDVIGKGGAVIRALTEETGTQ-INIEDDGTVTIASVDEAAGAEARRRVE 620
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
L VG +Y +++ + +G V++ PGR+GL HIS+++ + + D +K G +V
Sbjct: 621 ELAATVEVGKVYEG-KVQRLLDFGAIVQVLPGRDGLLHISQIAHERVNQVSDYLKEGQIV 679
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
VK++E++DK ++RLS +AL+
Sbjct: 680 RVKVLEIDDKDRIRLSMKALI 700
>gi|416163009|ref|ZP_11606888.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|433473162|ref|ZP_20430526.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|433481711|ref|ZP_20438976.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|433483697|ref|ZP_20440925.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|433485896|ref|ZP_20443097.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|432210763|gb|ELK66719.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|432217542|gb|ELK73410.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|432221400|gb|ELK77210.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|432222942|gb|ELK78724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
Length = 706
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 436/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPELWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|418559286|ref|ZP_13123832.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21252]
gi|371975577|gb|EHO92871.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21252]
Length = 698
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQCLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|407000457|gb|EKE17750.1| hypothetical protein ACD_10C00292G0001 [uncultured bacterium]
Length = 713
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/755 (40%), Positives = 439/755 (58%), Gaps = 67/755 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G+ + +E+G + RQA G+V T GET + +V A P DFFPL V+YQE++
Sbjct: 9 IQWGEETLTLESGKVARQADGSVIATYGETSVMANVTYARAPKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP RP ++GF +E +++ VLS+D ++ PD
Sbjct: 69 AAGKIPGGFFKREARPSEKETLTSRLIDRPCRPLFVEGFKNEVLVMATVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ A A+ +S VP I RVG G +++NP+ +M+ D +LDL++AG+
Sbjct: 129 VAMVAVSAALTISGVPFMGPIGAARVGFSGGNYVLNPSVDDMQGLRNNPDQRLDLVIAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E L+E+ ++ AV+ G A++ + + + E C K + D +L
Sbjct: 189 KDAVMMVESEAYELTEDEMLGAVKFGHAAMQPVIDLIIDFAEDCAK-EPFDFHAPDYADL 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
Y V+ ++ I++K R A+S+
Sbjct: 248 YAKVKAAGETQMRAAFAIRDKQERTNAISA------------------------------ 277
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
V + G +DE D+ +++++ K++ + LR I+ GG
Sbjct: 278 -------AVVAIKGALDESDL--------------ADINLGSAIKKLEASILRGDIINGG 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI S G+LPR HGSALFTRGETQ L V TLG + Q ID L +
Sbjct: 317 ARIDGRNNTTVRPIVSETGILPRTHGSALFTRGETQGLVVTTLGTGEDEQIIDALHGNSR 376
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIR+ S IT
Sbjct: 377 -SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPASTDFPYTIRLVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+DI G ED
Sbjct: 436 ESNGSSSMASVCGGSLSMMDAGVPLKSPVAGVAMGLILED-----DGRFAVLTDILGDED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +GIT QMDIKV GIT +M +AL QAKDGR HIL EM K P
Sbjct: 491 HLGDMDFKVAGTANGITTMQMDIKVAGITPEIMAQALAQAKDGRLHILGEMNKALSAP-Q 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
S++AP I +++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + D +++
Sbjct: 550 GFSEYAPKIETLQIPTDKIREVIGSGGKVIREIVELSGAK-VDINDDGIIKIASSDAAAI 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P G +Y +K + +G FV R+GL H+S++++ L +
Sbjct: 609 KKAYDMIWSIVAEPEEGQVYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANKRLNHPNE 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++K G V VKL+ +D+G++RL + + E E
Sbjct: 668 ILKEGQEVKVKLLGFDDRGKVRLGMKMVDQETGLE 702
>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
Length = 706
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 437/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G++ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNQTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+AGE + + +I+ K R L DE V+
Sbjct: 249 VAGETIKEAFKIRQKQERSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|411008261|ref|ZP_11384590.1| polynucleotide phosphorylase/polyadenylase [Aeromonas aquariorum
AAK1]
gi|423195556|ref|ZP_17182139.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
SSU]
gi|404633331|gb|EKB29880.1| polyribonucleotide nucleotidyltransferase [Aeromonas hydrophila
SSU]
Length = 712
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/744 (40%), Positives = 437/744 (58%), Gaps = 58/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G + +ETG M RQA+ AV V+ +T ++ +V DFFPL VN
Sbjct: 2 NPIVKSFQYGQHTVTLETGVMARQATAAVMVSMDDTCVFVTVVGKKEADHGRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGFF+REGR + E L+ RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVVATVMSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A+A+S +P I RVG + ++++NPTT E+ S LDL++AG+
Sbjct: 122 AVSPDIVAMIGASAALAISGIPFGGPIGAARVGYMNGQYVLNPTTTELPQSDLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+A+LM+E LSEE+++ AV G + ++ + N + G T L
Sbjct: 182 ANAVLMVESEAAILSEEVMLGAVVFGHEQMQAVINAINEFAADVGTKPWNWTAPAVNEAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+A EL + +I K R + + +++ +V+
Sbjct: 242 KAKVAELATAELGEAYRITEKAVRYETIGAIKARVV------------------------ 277
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E+V+ G V+E I + F + S+ +R R+V G
Sbjct: 278 -------EQVIASG-VEEDAKKIGEE-----------------FHSLESRIVRGRVVRGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR + IR +S G+LPRAHGSALFTRGETQ++ V TLG ++ AQ ID L + +
Sbjct: 313 PRIDGRDPEMIRALSVATGVLPRAHGSALFTRGETQAMVVATLGTERDAQNIDEL-TGNR 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPY +RV S IT
Sbjct: 372 ADRFMLHYNFPPYCVGETGMMGSPKRREIGHGRLAKRGVAAVMPSADEFPYVVRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + + F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QA+ R HIL M + P
Sbjct: 486 HLGDMDFKVAGTTEGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRA 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S AP IH +K+ PEKI +IG GG ++++ EETG I+ +DDGTV+I A D +
Sbjct: 546 EISDFAPRIHTIKINPEKIKDVIGKGGSVIRALTEETGTN-IELDDDGTVRIAAVDGDAA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ I +T V IY ++ +A +G FV I PG++GL HIS+++ + D
Sbjct: 605 KEAIRRIEAITAEIEVNRIYEGKVVR-LADFGAFVNILPGKDGLVHISQITDARVQNVAD 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+K+GD+V VK++EV+ +G++RLS
Sbjct: 664 YLKIGDVVKVKVLEVDRQGRVRLS 687
>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 706
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/757 (41%), Positives = 446/757 (58%), Gaps = 65/757 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 6 WGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 65
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 66 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 125
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT +++ S+LDL++AG++ A+LM+E
Sbjct: 126 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVAGTERAVLMVE 185
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 186 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 244
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A EL+ QI++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 245 AQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 299
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 300 -------------------------------------------LEAKIVRGQILGGEPRI 316
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + R
Sbjct: 317 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-DR 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESN
Sbjct: 376 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 436 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 489
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS
Sbjct: 490 DMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAGANTQLS 549
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++
Sbjct: 550 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEA 608
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 609 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 667
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE--NPP 845
G V VK+I+ ++KG++RLS +ALL EA A+ PP
Sbjct: 668 EGQQVKVKVIQTDEKGRVRLSAKALLNEAAAQTDTPP 704
>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
N315]
gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus COL]
gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH9]
gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH1]
gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu3]
gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus 132]
gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MR1]
gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014465|ref|YP_005290701.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus VC40]
gi|379020984|ref|YP_005297646.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|384861868|ref|YP_005744588.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384864501|ref|YP_005749860.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384869809|ref|YP_005752523.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|385781502|ref|YP_005757673.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 11819-97]
gi|386728960|ref|YP_006195343.1| Polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387150417|ref|YP_005741981.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|387602551|ref|YP_005734072.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|387780382|ref|YP_005755180.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus LGA251]
gi|404478615|ref|YP_006710045.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
08BA02176]
gi|415686466|ref|ZP_11450555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|415691124|ref|ZP_11453363.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|416839324|ref|ZP_11902718.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|416844709|ref|ZP_11905395.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|417649451|ref|ZP_12299250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
gi|417651264|ref|ZP_12301027.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|417802653|ref|ZP_12449710.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21318]
gi|417892222|ref|ZP_12536276.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21201]
gi|417896059|ref|ZP_12540026.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21235]
gi|417898433|ref|ZP_12542353.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21259]
gi|417903365|ref|ZP_12547212.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21269]
gi|418283118|ref|ZP_12895875.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21202]
gi|418284628|ref|ZP_12897345.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21209]
gi|418306724|ref|ZP_12918497.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21194]
gi|418309656|ref|ZP_12921207.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21331]
gi|418317764|ref|ZP_12929180.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21232]
gi|418424415|ref|ZP_12997537.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427410|ref|ZP_13000422.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS2]
gi|418433216|ref|ZP_13005993.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436887|ref|ZP_13008689.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439759|ref|ZP_13011466.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442811|ref|ZP_13014413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445870|ref|ZP_13017346.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448814|ref|ZP_13020206.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451638|ref|ZP_13022972.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454694|ref|ZP_13025956.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457570|ref|ZP_13028773.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418569013|ref|ZP_13133353.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21272]
gi|418570763|ref|ZP_13135024.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21283]
gi|418572334|ref|ZP_13136546.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21333]
gi|418579108|ref|ZP_13143203.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418638080|ref|ZP_13200383.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-3]
gi|418642803|ref|ZP_13204989.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-24]
gi|418654655|ref|ZP_13216551.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-99]
gi|418657913|ref|ZP_13219664.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-111]
gi|418661528|ref|ZP_13223113.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-122]
gi|418873518|ref|ZP_13427813.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-125]
gi|418878123|ref|ZP_13432358.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880953|ref|ZP_13435172.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883881|ref|ZP_13438076.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886536|ref|ZP_13440684.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418889067|ref|ZP_13443203.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418894974|ref|ZP_13449069.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418903487|ref|ZP_13457528.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906210|ref|ZP_13460237.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911881|ref|ZP_13465864.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG547]
gi|418914372|ref|ZP_13468344.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920353|ref|ZP_13474286.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418925511|ref|ZP_13479413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928534|ref|ZP_13482420.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418931345|ref|ZP_13485186.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418980019|ref|ZP_13527807.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus DR10]
gi|418991138|ref|ZP_13538799.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1096]
gi|418993895|ref|ZP_13541531.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG290]
gi|419774387|ref|ZP_14300357.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|422742391|ref|ZP_16796397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745494|ref|ZP_16799433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424768042|ref|ZP_18195335.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CM05]
gi|424785106|ref|ZP_18211909.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
CN79]
gi|440705985|ref|ZP_20886734.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|440734720|ref|ZP_20914332.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443636828|ref|ZP_21120921.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|448743346|ref|ZP_21725255.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/Y21]
gi|81694630|sp|Q5HGF7.1|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81705784|sp|Q7A5X7.1|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81781693|sp|Q99UJ8.1|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940100|sp|Q2FHG4.1|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940102|sp|Q2FZ20.1|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611294|sp|A7X1Q8.1|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611295|sp|A6QGH3.1|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037316|sp|A6U193.1|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037317|sp|A5ISF8.1|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037318|sp|A8Z3V4.1|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus N315]
gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu50]
gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus COL]
gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH9]
gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH1]
gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu3]
gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
gi|334274289|gb|EGL92611.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21318]
gi|341840960|gb|EGS82432.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21235]
gi|341848466|gb|EGS89629.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21259]
gi|341849986|gb|EGS91119.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21269]
gi|341858189|gb|EGS98990.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21201]
gi|344177484|emb|CCC87953.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus LGA251]
gi|359830293|gb|AEV78271.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|364522491|gb|AEW65241.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365168715|gb|EHM60053.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21202]
gi|365173176|gb|EHM63763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21209]
gi|365237779|gb|EHM78618.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21331]
gi|365245032|gb|EHM85684.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21232]
gi|365246381|gb|EHM86937.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21194]
gi|371978198|gb|EHO95448.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21272]
gi|371982943|gb|EHP00091.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21283]
gi|371984818|gb|EHP01927.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21333]
gi|374363162|gb|AEZ37267.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus VC40]
gi|375014480|gb|EHS08161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-99]
gi|375015916|gb|EHS09560.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-24]
gi|375023304|gb|EHS16767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038710|gb|EHS31671.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-122]
gi|375039683|gb|EHS32602.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366055|gb|EHS70067.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-125]
gi|377694245|gb|EHT18610.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694780|gb|EHT19144.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377697135|gb|EHT21490.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377714627|gb|EHT38826.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714968|gb|EHT39166.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723260|gb|EHT47385.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725259|gb|EHT49374.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725489|gb|EHT49602.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377731846|gb|EHT55899.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377738446|gb|EHT62455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742502|gb|EHT66487.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744580|gb|EHT68557.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377745945|gb|EHT69920.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754577|gb|EHT78486.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1524]
gi|377757874|gb|EHT81762.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765510|gb|EHT89360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377765712|gb|EHT89561.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC348]
gi|379992182|gb|EIA13639.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus DR10]
gi|383971913|gb|EID87975.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230253|gb|AFH69500.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 71193]
gi|387718997|gb|EIK06953.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720322|gb|EIK08234.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725656|gb|EIK13260.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727991|gb|EIK15491.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730721|gb|EIK18082.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735798|gb|EIK22908.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737476|gb|EIK24542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS7]
gi|387738030|gb|EIK25084.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744519|gb|EIK31283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745809|gb|EIK32559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747302|gb|EIK34011.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348679|gb|EJU83658.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CM05]
gi|404440104|gb|AFR73297.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
08BA02176]
gi|408423463|emb|CCJ10874.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408425453|emb|CCJ12840.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408427441|emb|CCJ14804.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408429428|emb|CCJ26593.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408431416|emb|CCJ18731.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408433410|emb|CCJ20695.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408435401|emb|CCJ22661.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408437386|emb|CCJ24629.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|421956516|gb|EKU08845.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
CN79]
gi|436431748|gb|ELP29101.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507516|gb|ELP43196.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|443406805|gb|ELS65375.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|445563275|gb|ELY19437.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/Y21]
Length = 698
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|190149890|ref|YP_001968415.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|189915021|gb|ACE61273.1| polyribonucleotide nucleotidyltransferase [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
Length = 685
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 298/714 (41%), Positives = 427/714 (59%), Gaps = 58/714 (8%)
Query: 122 ETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLID 181
+T ++ +V E DFFPL V+YQER AAGR GGFFKREGR + E L+ RLID
Sbjct: 6 DTTVFVTVVAKKEVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLID 65
Query: 182 RPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGL 241
RP+RP +GF++E Q+++ V+S + PD +A+ A A++LS VP + I RVG
Sbjct: 66 RPVRPLFPEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGF 125
Query: 242 VGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREIS 301
+ D+F++NPTT E + S+LDL++AG+D A+LM+E D LSEE ++ AV G + +
Sbjct: 126 INDQFVLNPTTSEQKISRLDLVVAGTDKAVLMVESEADILSEEQMLSAVVFGHQQQQVVI 185
Query: 302 NEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEK 361
+K V+ GKP+ P L V+ +A + +I K R + + +++
Sbjct: 186 ENIKEFVKEAGKPRWDWVAPEPNTALINQVKALAEARIGDAYRITEKQARYEQIDAIKAD 245
Query: 362 VLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPML 421
V+ L+ ++DETV E ++D
Sbjct: 246 VIAQLT-----AQDETVS---------------EGAIID--------------------- 264
Query: 422 FSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGE 481
+ + S +R RI+ G R DGR D +R + G+LPR HGSA+FTRGE
Sbjct: 265 --------IITALESSIVRGRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGE 316
Query: 482 TQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTL 541
TQ+LAV TLG ++ AQ ID L + ++ RF Y+FPP SVGE GRIG+P RREIGHG L
Sbjct: 317 TQALAVATLGTERDAQIIDEL-TGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRL 375
Query: 542 AERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAM 601
A+R + V+P+ +FPY +RV S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AM
Sbjct: 376 AKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 435
Query: 602 GMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMK 661
G+V + ++F ++LSDI G ED GDMDFKVAG +G+TA QMDIK+ GIT +M+
Sbjct: 436 GLVKEEEKF------VVLSDILGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMQ 489
Query: 662 KALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSII 721
AL QAK R HIL+ M + P P +S AP IH MK+ P+KI +IG GG ++++
Sbjct: 490 IALNQAKGARMHILSVMEQAIPAPRADISDFAPRIHTMKIDPKKIKDVIGKGGAVIRALT 549
Query: 722 EETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVF 781
EETG +ID +DDGTVKI A D ++ + A I ++ V IY+ ++ + +G F
Sbjct: 550 EETGT-SIDIDDDGTVKIAATDNNAAKAVMARIEDIVAEVEVNAIYKG-KVTRVVDFGAF 607
Query: 782 VEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V I G+EGL HIS++++ + + D + VG V VK++E++ + ++RL+ + L
Sbjct: 608 VSILGGKEGLVHISQITNERVERVADYLSVGQEVTVKVVEIDRQNRIRLTMKDL 661
>gi|229098276|ref|ZP_04229223.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|229117294|ref|ZP_04246672.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|423378354|ref|ZP_17355638.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|423441462|ref|ZP_17418368.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|423448312|ref|ZP_17425191.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|423464536|ref|ZP_17441304.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|423533878|ref|ZP_17510296.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
gi|423540853|ref|ZP_17517244.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|423547091|ref|ZP_17523449.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|423615932|ref|ZP_17591766.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|423623117|ref|ZP_17598895.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|228666194|gb|EEL21658.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus Rock1-3]
gi|228685174|gb|EEL39105.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-29]
gi|401128906|gb|EJQ36589.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG5O-1]
gi|401172041|gb|EJQ79262.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB4-10]
gi|401178812|gb|EJQ85985.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB5-5]
gi|401259890|gb|EJR66064.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD148]
gi|401260469|gb|EJR66642.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD115]
gi|401636620|gb|EJS54374.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG1O-2]
gi|402418123|gb|EJV50423.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG4X2-1]
gi|402420803|gb|EJV53074.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-1]
gi|402464097|gb|EJV95797.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB2-9]
Length = 712
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K+ + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|187611319|sp|A4WWP0.2|PNP_RHOS5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 714
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/763 (40%), Positives = 434/763 (56%), Gaps = 73/763 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA G+V T GET + +V A DFFPL V+YQER+
Sbjct: 9 IEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP I RVG ++++NP +M+ + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQRLDLVIAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV+ G +A++ + + + E K + PP+
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAK----EPFDFSPPDY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ + ++ I+ K R A+ + + LS+ DE +G
Sbjct: 245 AALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLSDAELA--DENLGTA--- 299
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
FK++ S LR I+
Sbjct: 300 ----------------------------------------------FKKLESSILRGDII 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
GG R DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID L
Sbjct: 314 NGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 NSR-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGKWAVLTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 488 DEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHILGEMSKAL-S 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+NS S +AP I + + +KI +IGSGGK ++ I+E +G + +D DDG +KI + D
Sbjct: 547 SANSFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASNDQ 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++++K+ +I ++ P G IY +K + +G FV R+GL H+S++++ L
Sbjct: 606 AAIKKAYDMIWSIVAEPEEGQIYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANKRLTH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
+V+K G V VKL+ +++G++RL + + E E P K
Sbjct: 665 PNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIAPEK 707
>gi|399994417|ref|YP_006574657.1| polyribonucleotide nucleotidyltransferase Pnp [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|400755965|ref|YP_006564333.1| polyribonucleotide nucleotidyltransferase Pnp [Phaeobacter
gallaeciensis 2.10]
gi|398655118|gb|AFO89088.1| polyribonucleotide nucleotidyltransferase Pnp [Phaeobacter
gallaeciensis 2.10]
gi|398658972|gb|AFO92938.1| polyribonucleotide nucleotidyltransferase Pnp [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 712
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 315/755 (41%), Positives = 442/755 (58%), Gaps = 67/755 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQE++
Sbjct: 9 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ LS P IA RVG G ++++NPT +M+D +LDL++AG+
Sbjct: 129 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E L+E ++ AV+ + ++ + + + +L E K + D EL
Sbjct: 189 KDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAK-EPFDFQPADYSEL 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ E++ I +K R A+++ E + T LSE +
Sbjct: 248 FAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSE-----------------EQ 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
LED ++ K++ + LR +V+ G
Sbjct: 291 LED----------------------------------ANLGSALKKLEAGILRGDVVKTG 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR +R I S G+LPR HGSALFTRGETQ+LAV TLG Q ID L + +
Sbjct: 317 KRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLGTGDDEQFIDALHGNFK 376
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S IT
Sbjct: 377 -SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ ILSDI G ED
Sbjct: 436 ESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGSYAILSDILGDED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG + GIT+ QMDIKV GIT +M+KAL QAKDGR HIL EM K +N
Sbjct: 491 HLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGEMAKAL-SETN 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + D +++
Sbjct: 550 AFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASADGTAI 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P G +Y +K I +G FV R+GL H+S++ + L D
Sbjct: 609 QKAYDMIHSIVAEPEEGAVYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V+K G V VKL+ +D+G++RLS + + E E
Sbjct: 668 VLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEE 702
>gi|260771810|ref|ZP_05880728.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
gi|260613102|gb|EEX38303.1| polyribonucleotide nucleotidyltransferase [Vibrio metschnikovii CIP
69.14]
Length = 711
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/762 (40%), Positives = 439/762 (57%), Gaps = 62/762 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKDAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFHDAFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPNVQPDIVTMIGTSAALAISGMPFNGPIGAARVGHINGQLVLNPSPKELDQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D LSEE ++ AV G D + + N + P
Sbjct: 182 GTEGAVLMVESEADILSEEEMLAAVVYGHDQQQVVINAINEFAAEVATPSWDWVAPQENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + + ++A L + QI K+ R + +++++ V+ +
Sbjct: 242 ALKEKIAQLAEVRLTEAYQIIEKMARYEKVAAIKADVIAAI------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L ED+ +D + +K + + + +R RI+
Sbjct: 283 -LAEDDSQDV-----------------------------MKIKKLLGALEKQVVRGRIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G +R DGR D IR + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GEKRIDGREKDMIRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DYFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSADEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + + F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEDENF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAIAGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RDDISEFAPRIHTMKISSEKIKDVIGKGGAVIRMLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAQEAIRRILQITAEVEVGKIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRIEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALL----PEADAEN 843
DV+ G V VK++E++ +G++RLS + + EA AEN
Sbjct: 664 SDVLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEASAEN 705
>gi|417891826|ref|ZP_12535883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21200]
gi|341851112|gb|EGS92041.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21200]
Length = 698
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVITMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|260425775|ref|ZP_05779755.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
gi|260423715|gb|EEX16965.1| polyribonucleotide nucleotidyltransferase [Citreicella sp. SE45]
Length = 716
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/746 (41%), Positives = 442/746 (59%), Gaps = 67/746 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G+V T GET + +V A P DFFPL V+YQE++
Sbjct: 9 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF HE ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKHEVLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP IAG RVG ++++NPT +M+ + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIAGARVGFEDGEYVLNPTVDDMQGLRNNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E L+E+ ++ AV + ++ + + + +L E K + D EL
Sbjct: 189 KDAVMMVESEAYELTEDEMLGAVTFAHEQIQPVIDLIISLAEEAAK-EPFDFQAPDYSEL 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++ V+ E++ I +K R A+S+++E++ LSE +
Sbjct: 248 FEVVKGFGEEKMRAAYAISDKQERVAAVSAVKEEIKGQLSE-----------------EQ 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
LED ++ K++ S LR +V+
Sbjct: 291 LED----------------------------------ANLGSALKKLESNVLRADVVKNK 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RR DGR D +RPI S +LPR HGS+LFTRGETQ+L V TLG Q ID L +
Sbjct: 317 RRIDGRALDQVRPIVSETSVLPRTHGSSLFTRGETQALVVTTLGTGDDEQIIDALHGNFR 376
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIRV S IT
Sbjct: 377 -SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL E GG+ +L+DI G ED
Sbjct: 436 ESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVL---EDGGEYA--VLTDILGDED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E+GIT+ QMDIKV GIT +MK+AL QAK GR HILAEM K +
Sbjct: 491 HLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALAQAKAGRLHILAEMAKAL-TEAG 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + + ++
Sbjct: 550 EFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASANGEAI 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P G +Y+ +K I +G FV R+GL H+S++ + L D
Sbjct: 609 QKAYDMIYSIVAEPEEGHVYKGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRR 833
V+K G V VKL+ +D+G++RL+ +
Sbjct: 668 VLKEGQEVYVKLLGFDDRGKVRLAMK 693
>gi|310779081|ref|YP_003967414.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
DSM 2926]
gi|309748404|gb|ADO83066.1| polyribonucleotide nucleotidyltransferase [Ilyobacter polytropus
DSM 2926]
Length = 716
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/749 (40%), Positives = 450/749 (60%), Gaps = 59/749 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
+++ G R + + TG + RQ+ GAV + G+TI+ ++V + + +DFFPL V++ E+
Sbjct: 7 MEMEIGGRTLSLSTGKIARQSCGAVMIQYGDTILLSTVNRSKEGRKGADFFPLTVDFLEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+ A G+ GGF KRE R L RLIDRP+RP +GF ++ I++ V SYDG + P
Sbjct: 67 YYAVGKFPGGFHKREARPSTDATLTARLIDRPIRPMFPEGFNYDVHIVNTVFSYDGDNTP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L + + A+ LS++P +AGV V + G++FI+NPT +E+ +S L+L +AG+ DA+
Sbjct: 127 DYLGIIGSSAALMLSDIPFLGPVAGVVVAMKGEEFILNPTPKELAESPLNLSVAGTKDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL---- 327
M+E +SEE++++A+ D +++I + + GK K + PE+
Sbjct: 187 NMVEAGASEMSEEVMLKAILFAHDNIKKICEFQEEFARLAGKEKF----EFVKPEIDETV 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
++E GE L K + K R A++ LE+++L +E Y+ ++E +E +P
Sbjct: 243 QSFIDENGGERLKKAVLAIGKQAREDAVNDLEDELLASFTEK-YIQENE----LEELP-- 295
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
GE+ E + K + ++ KF+R IV
Sbjct: 296 -------------GEI--------------------EGEFKSYYHDLMKKFVREAIVYNK 322
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + + G LP HGSA+FTRGETQ++ TLG KQ Q +D L +++
Sbjct: 323 HRVDGRKTDEIRDLYAEIGTLPLPHGSAMFTRGETQAIVTTTLGTKQDEQLVDGL-NEEY 381
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
K+FYL Y+FPP SVGE + AP RRE+GHG LAERAL V+PS +DFPYT+RV S IT
Sbjct: 382 YKKFYLHYNFPPYSVGEARFMRAPGRRELGHGALAERALSYVMPSTDDFPYTVRVVSEIT 441
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CGG LAL AGVP+K +AG+AMG+V + D++ +L+DI G ED
Sbjct: 442 ESNGSSSQASICGGSLALMAAGVPVKSHVAGIAMGLVKEGDDYA------VLTDIMGLED 495
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E GITA QMDIK+ GI VM+ AL+QA D R I+ M P+
Sbjct: 496 HLGDMDFKVAGTEAGITALQMDIKITGIDENVMRIALKQALDARLQIIGVMKNAIEAPA- 554
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
L+ AP I+ M V +KI +IG GGK +K+IIEETG ID EDDG V I + D +L
Sbjct: 555 ELAASAPRIYQMMVPTDKIAALIGPGGKNIKAIIEETGA-TIDIEDDGKVSIFSNDGETL 613
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
EK+ +++N G+IY+ +K +A +G F++I PG+EGL H+SE++ +A +D
Sbjct: 614 EKTINLVNNYVKDIEAGEIYQGKVVK-VAKFGAFMQILPGKEGLLHVSEIAHERVANVDD 672
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
V+ VGD+++VK+I N+ G++ LSR+ L+
Sbjct: 673 VLSVGDILEVKVIS-NENGKVSLSRKQLI 700
>gi|406982603|gb|EKE03900.1| hypothetical protein ACD_20C00134G0027 [uncultured bacterium]
Length = 712
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/751 (41%), Positives = 438/751 (58%), Gaps = 55/751 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ GD+ + +ETG + RQA+G+VTV T++ +V + + P DFFPL V+Y+E+
Sbjct: 9 LQIGDKTVELETGRLARQAAGSVTVKCEGTVLLVAVTVNEEPRPGIDFFPLLVDYEEKMY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
+ G+ GGF K+EGR D +L RLIDRP+RP KGF ++ QI++ +S D + PD
Sbjct: 69 SVGKIPGGFLKKEGRPSDRAILTSRLIDRPIRPLFPKGFRNDVQIVAANISSDQIIQPDT 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
LA+ A +A+ LS P I VRV V +FI NPT +E + S LD+++AG++D++LM
Sbjct: 129 LAIFGASVALELSGAPFQGPIGAVRVAKVDGRFIANPTYEESDYSALDIVIAGTEDSVLM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E CDF+ EE + AV+ +++ +A CG K EL+ ++E
Sbjct: 189 VEAGCDFVPEEEIFAAVEFALPEIKKQVEAQRAFTAQCGITKQEYVNPHDTTELHNLIQE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
A + + + ++ R+ L+ +E V I +L ED
Sbjct: 249 AASQLINEAYHNFDREGRKVKLNEAKEIVKA------------------KIEELPED--- 287
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLV---FKEVTSKFLRRRIVEGGRRS 450
S L + D+K V FK V K +R ++ G R+
Sbjct: 288 ----------------------SSIKQLLASSDIKFVNEEFKSVEKKIMRSMVLNEGVRA 325
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI+ G+LPR HGSA+FTRG TQ+L+V TLG AQ +D + S + KR
Sbjct: 326 DGRKYDEIRPITVEVGVLPRTHGSAVFTRGSTQALSVATLGSPGDAQSLDGI-SPETTKR 384
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ YSFP + GEV + RREIGHG LAE+A+ P LP FPYT+RV S I ESN
Sbjct: 385 YMHHYSFPGYATGEVRPMRGAGRREIGHGVLAEKAILPSLPPKETFPYTLRVNSDILESN 444
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMAS CG CLAL DAGVP+ + GVAMG+V + D+ IL+DI G ED G
Sbjct: 445 GSSSMASTCGSCLALMDAGVPLTTVVGGVAMGLVKEGDQVA------ILTDIQGLEDFLG 498
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKV GN++GITA QMD+K+ GI++ +KKA+ QAK GR I+ +M + P +S
Sbjct: 499 DMDFKVTGNKEGITALQMDMKIKGISIETLKKAIDQAKVGRNFIIDKMTEALSAPRAEMS 558
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
AP IH MK+ + I +IG GGK +++I+EETGV ID EDDGTV IT+ + + EK+
Sbjct: 559 PFAPRIHTMKIDVDTIGAVIGPGGKTIRAIVEETGV-TIDIEDDGTVLITSANGPATEKA 617
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+II NLT T G I R +++I P G FVE+APG++G+ HIS+++ LA+ ED +
Sbjct: 618 ISIIENLTRKITPGLIVRGKVVRTI-PIGAFVELAPGKDGMVHISQITQERLARVEDAIN 676
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
VGD V VK++ V+DKG++ L+ + + E A
Sbjct: 677 VGDEVIVKVMSVDDKGRVNLTMKGVTEEEKA 707
>gi|56419804|ref|YP_147122.1| polynucleotide phosphorylase [Geobacillus kaustophilus HTA426]
gi|81347597|sp|Q5L0I2.1|PNP_GEOKA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56379646|dbj|BAD75554.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Geobacillus kaustophilus HTA426]
Length = 723
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 317/756 (41%), Positives = 456/756 (60%), Gaps = 60/756 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R +++ETG + +QA+GA V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDVAGRPLIIETGELAKQANGAALVRYGDTVVL-STATASREAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +LV RLIDRP+RP +GF +E Q++S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V +F++NPT ++ME S L L++AG+ DAI M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + V+ + + + GK KM + P P L + +
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ + +Q+ K+ R A+ ++ G ++K E E+
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVK---------AGVIAK-------------YEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE K ++ +L KLV +EV RR I R DGR
Sbjct: 287 DEE----------------KLKQVQEILH-----KLVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L+V TLG Q +D L+ + E KRF
Sbjct: 321 KVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLE-ESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++AL QA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I IM + P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ D ++ +K+K I
Sbjct: 554 PKILIMHINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVDEAANQKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG +Y ++K I +G FVE+ G++GL HISEL+ + K EDVV +GD
Sbjct: 613 IEDIVREVEVGQVYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
+ VK+ E++ +G++ LSR+A+L DA N +LP
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL--RDARNIGGELP 705
>gi|115352342|ref|YP_774181.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
AMMD]
gi|172061213|ref|YP_001808865.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ambifaria
MC40-6]
gi|122322637|sp|Q0BDC6.1|PNP_BURCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226702626|sp|B1YTR1.1|PNP_BURA4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115282330|gb|ABI87847.1| 3' exoribonuclease [Burkholderia ambifaria AMMD]
gi|171993730|gb|ACB64649.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MC40-6]
Length = 714
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 315/754 (41%), Positives = 444/754 (58%), Gaps = 58/754 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A +L+ Q+++K R L + Y + T L ED
Sbjct: 252 AHGDLLAAYQLRDKQARSTKLKEV------------YAA---------TSAKLEEDAQAA 290
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
V D K+T V V ++ +K +R +I+ G R DGR
Sbjct: 291 GTVAAD---------------KAT--------VGNVLFDIEAKIVRSQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T+ VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITVEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADA---ENPP 845
V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAASQSDTPP 712
>gi|121998524|ref|YP_001003311.1| polynucleotide phosphorylase/polyadenylase [Halorhodospira
halophila SL1]
gi|187610274|sp|A1WXU7.1|PNP_HALHL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121589929|gb|ABM62509.1| Polyribonucleotide nucleotidyltransferase [Halorhodospira halophila
SL1]
Length = 702
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/754 (41%), Positives = 438/754 (58%), Gaps = 65/754 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
PV FG Q+ +ETG + RQA GAV V +T++ +V P+ DF PL VNY
Sbjct: 10 PVKRSFQFGQHQVTLETGGVARQADGAVLVDMADTVVLVTVVGRKDPAAARDFLPLTVNY 69
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR GGFFKREGR + E L CRLIDRP+RP +GF E Q+++ VLS +
Sbjct: 70 QERTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFRQEVQVIATVLSLNDE 129
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
D A+ A+ALS +P I RVG + +F++NPT + +S LDL++AG+
Sbjct: 130 VDADIPAMIGTSAALALSGIPFEGPIGACRVGHLDGEFVLNPTFSQTAESDLDLVVAGTQ 189
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--- 325
DA+LM+E + L E ++ AV G + ++ + + L GKP+ PP
Sbjct: 190 DAVLMVESEANLLPESTMLDAVLYGHEQMQVAIDTINDLAAEAGKPRW----DWQPPAKN 245
Query: 326 -ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L V E+ +L QI +K R + + +L +K + L+
Sbjct: 246 ESLDSAVAELVRSDLEAAYQIADKQERSERVGALRDKAVEALA----------------- 288
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
DE+ E G+V E FK + K +R RI+
Sbjct: 289 -------DEEREGWGAGDVGEA------------------------FKTLEKKIVRGRIL 317
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR +RP++ + G+LPR HGSA+FTRGETQ++ V TLG + AQ ID LE
Sbjct: 318 AGHPRIDGRDNQTVRPLNVQAGVLPRTHGSAIFTRGETQAIVVSTLGTGRDAQVIDALEG 377
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP VGE G IG P RREIGHG LA+R +E V+PSD +FPY IRV S
Sbjct: 378 ERR-EPFMLHYNFPPYCVGETGFIGTPKRREIGHGKLAKRGVEAVMPSDEEFPYVIRVVS 436
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
+TESNGSSSMA+VCG L+L DAGVP+K +AG+AMG++ + DEF +L+DI G
Sbjct: 437 EVTESNGSSSMATVCGTSLSLMDAGVPLKAQVAGIAMGLIKEGDEFA------VLTDILG 490
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG++DG+TA QMDIK+ GIT +M++AL QA+ GR HIL +M +
Sbjct: 491 DEDHLGDMDFKVAGSKDGVTALQMDIKIDGITREIMEQALDQARSGRLHILEQMNQVIDK 550
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P +S++AP + M++ PE+I +IG GG ++ + EETG ID D+G V I + D
Sbjct: 551 PREQMSEYAPRLLTMRIDPERIRDVIGKGGATIRGLTEETGTN-IDISDEGVVTIASADK 609
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++ E++K I LT VG +Y + ++ + +G FV I PGR+GL HIS++S+N +
Sbjct: 610 AAAEEAKKRIELLTADVEVGKVY-DGKVAKLMDFGAFVNILPGRDGLVHISQISNNRVEN 668
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
D + GD V VK++EV+ +G++RLS +A+ E
Sbjct: 669 VADELSEGDSVRVKVLEVDRQGRIRLSMKAVEEE 702
>gi|424902717|ref|ZP_18326233.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
gi|390933092|gb|EIP90492.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 713
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/757 (41%), Positives = 446/757 (58%), Gaps = 65/757 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVVVDIEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT +++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTRAQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A EL+ QI++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 306
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 307 -------------------------------------------LEAKIVRGQILGGEPRI 323
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + R
Sbjct: 324 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-DR 382
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESN
Sbjct: 383 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESN 442
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 443 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 496
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS
Sbjct: 497 DMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAGANTQLS 556
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++
Sbjct: 557 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEA 615
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 616 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 674
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE--NPP 845
G V VK+I+ ++KG++RLS +ALL EA A+ PP
Sbjct: 675 EGQQVKVKVIQTDEKGRVRLSAKALLNEAAAQTDTPP 711
>gi|390934932|ref|YP_006392437.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570433|gb|AFK86838.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 700
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/740 (41%), Positives = 439/740 (59%), Gaps = 59/740 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R+++V+TG + + A+G+ V G+T++ + C + P E DFFPL+V+Y+ER + G+
Sbjct: 12 RKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKI 71
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D P+ +A+
Sbjct: 72 PGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPEIVAMIG 131
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
+ +A+++S++P + V V LV FI+NP + E S L L ++G+ DAI+M+E
Sbjct: 132 SSVALSISDIPFNGPTGSVSVALVDGNFIINPDLKAREKSDLHLTVSGTKDAIMMVEAGA 191
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + EE+++ A+ + +++I ++ +V+ G PK T+ L + V E A E+
Sbjct: 192 NEVPEEVMLDAIMYAHEYIKQIVEFIEGIVKEVGLPKAEVTVHEIDANLEQQVREFATEK 251
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ L+ + K R + +EE+VL KDE PD + D DE
Sbjct: 252 IYNALRTEEKKERNDNIDKVEEEVLDHF-------KDEY-------PDNIADIDE----- 292
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
V +T + +R+ I E R DGR D I
Sbjct: 293 -------------------------------VLYTITKEQMRKMITEEKIRVDGRGLDDI 321
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPI+ G+LPR HGSA+FTRG+TQ + V TLG Q +D L D+E KR+ Y+FP
Sbjct: 322 RPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILDGL-GDEESKRYMHHYNFP 380
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + P RREIGHG LAERALEP++PS+ +FPYTIR+ S + SNGS+S ASV
Sbjct: 381 PFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIRLVSEVLSSNGSTSQASV 440
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG LAL DAGVPIK +AGVAMG++ + D T IL+DI G ED GDMDFKVAG
Sbjct: 441 CGSTLALMDAGVPIKAPVAGVAMGLIKEGD------TVSILTDIQGIEDFLGDMDFKVAG 494
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E GITA QMDIK+ GI ++ AL++A+ GR IL +ML+ P LS +AP I
Sbjct: 495 TEKGITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLETIKEPRKELSPYAPRIIS 554
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+ V PEKI IIG+GGK + II +TGV+ ID EDDG V I++ DL + EK+K II +T
Sbjct: 555 LNVDPEKIRDIIGAGGKTINKIIADTGVK-IDIEDDGRVFISSTDLKAGEKAKMIIEAIT 613
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG IY ++ +A +G FVEIAPG+EGL HIS+L + K EDVV +GD + VK
Sbjct: 614 KDVEVGSIYLG-KVTRLASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVVNIGDEILVK 672
Query: 819 LIEVNDKGQLRLSRRALLPE 838
+ E++ +G++ LSR+ LPE
Sbjct: 673 VTEIDKQGRINLSRKDALPE 692
>gi|315918159|ref|ZP_07914399.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
gi|313692034|gb|EFS28869.1| polyribonucleotide nucleotidyltransferase [Fusobacterium
gonidiaformans ATCC 25563]
Length = 707
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/751 (40%), Positives = 442/751 (58%), Gaps = 63/751 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
++++ R + V TG + RQ+ GAV + G+T++ ++V + P + +DFFPL V+Y E
Sbjct: 6 TLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+F AAG+ GGF KRE R LV RLIDRP+RP +GF ++ I++ V S+D +
Sbjct: 66 KFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNT 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L + + +A+++S++P +AGV VG + +FI+NP+ +++E S LDL +AG+ DA
Sbjct: 126 PDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEQSLLDLSVAGTKDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM------LDTIKLPP 324
+ M+E L EE +++A+ D +++I + V++CGK K+ +DT+
Sbjct: 186 VNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDTV---- 241
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
+ +EE E L + K R +A+ LEE++L+ E Y
Sbjct: 242 --ISSFIEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIEKQY------------- 286
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
P + + K + ++ K +R I+
Sbjct: 287 ---------------------------PDVAEEEIPEEPILAFKKYYHDLMKKLVREAIL 319
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
R DGR IRP+ ++ +LP HGSALFTRGETQSLA TLG K Q +DNLE
Sbjct: 320 YKKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEK 379
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ K+FYL Y+FPP SVGE GR+GAP RRE+GHG+LAERAL V+P++ +FPYTIRV S
Sbjct: 380 -EYYKKFYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERALRYVIPTEEEFPYTIRVVS 438
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSS AS+CGG LAL AGVPIK +AG+AMG++ + +EF +L+DI G
Sbjct: 439 DITESNGSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEF------TVLTDIMG 492
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG + GITA QMDIK+ GIT +M+ AL QA R+ IL M
Sbjct: 493 LEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALSQAHVARQQILEVMNAAISS 552
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
P++ L + P I + + +KI ++IG GGK +K IIEETG ID DDG V I +KDL
Sbjct: 553 PAD-LKPNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETG-STIDITDDGKVSIFSKDL 610
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
LE + +++N + ++Y ++ I +G F+EI PG+EGL HISE+S +A
Sbjct: 611 EVLENTLRLVNNYVKDVELNEVYEG-KVVGIQKFGAFMEILPGKEGLLHISEISKERVAN 669
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
EDV+K+GD+ VK+I + D G++ LS++ L
Sbjct: 670 VEDVIKMGDVFKVKVISL-DNGKIALSKKKL 699
>gi|188996726|ref|YP_001930977.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
sp. YO3AOP1]
gi|254782742|sp|B2V900.1|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 703
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/741 (40%), Positives = 448/741 (60%), Gaps = 59/741 (7%)
Query: 103 VETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGF 162
+ETG+ +QA+GAV V G+T + + +++ P DF PL V Y+E++ A G+ GGF
Sbjct: 17 IETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIPGGF 76
Query: 163 FKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIA 222
KREG+ + E+LV R IDRP+RP KGFY++ I ++ LS D + PD L + A A
Sbjct: 77 VKREGKPSEREILVARNIDRPIRPLFPKGFYNDVIITAYTLSADDQYDPDVLGIVGASAA 136
Query: 223 VALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLS 282
+ +S++P IAGVRV V +FIVNPT Q+ S L++++AGS DAI+M+EG +
Sbjct: 137 LHISDIPFEGPIAGVRVCRVDGQFIVNPTYQQKAKSDLEIVVAGSKDAIVMVEGGAKEVP 196
Query: 283 EEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKV 342
EE++++A+ G ++++ + L GK K+ I L + +E+A + +
Sbjct: 197 EEVILEAMLFGHQEIKKLIELQEELRAKYGKEKIEIPIDEEEILLKEKFKELAYVRIKEA 256
Query: 343 LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGE 402
I +K R K ++++ E++ T L IP+
Sbjct: 257 FNISDKKERNKQINAIFEEIKTTLE----------------IPE---------------- 284
Query: 403 VDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPIS 462
K +K++ V+K+V S +R ++ R DGR + IRPI
Sbjct: 285 ---------EKVKKAS----------FVYKDVVSNVMRDLVLYENIRIDGRKPEEIRPIW 325
Query: 463 SRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSV 522
+ G+ PR HGSA+FTRG+TQ+ +TLG Q +++E+ + +KRF L Y+FPP S
Sbjct: 326 IKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEAGETLKRFMLHYNFPPFST 385
Query: 523 GEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGC 582
GE SRREIGHG LAERALEP++PS+ +FPY IRV S I ESNGS+SMA+VCGG
Sbjct: 386 GEAKPPRPVSRREIGHGNLAERALEPLIPSEEEFPYVIRVVSDILESNGSTSMATVCGGS 445
Query: 583 LALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDG 642
LAL DAGVP+K +AG+AMG++ D+F ++LSDI G ED GDMDFKVAG DG
Sbjct: 446 LALFDAGVPMKKHVAGIAMGLIKSEDKF------VVLSDILGDEDHLGDMDFKVAGTRDG 499
Query: 643 ITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVK 702
+T+ QMDIKV G+T +++KAL+QA++GR +IL M + P P LS +AP + ++V
Sbjct: 500 VTSIQMDIKVKGLTREILQKALEQAREGRNYILDLMYQAIPEPRKELSPYAPTVTTLRVL 559
Query: 703 PEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT 762
PEKI++IIG GK +K IIEETGV+ ID + G VKI A + EK+ +I+ L M
Sbjct: 560 PEKISVIIGPAGKNIKKIIEETGVK-IDLDPTGLVKIYATSKIAAEKAIDMINQLIMDIE 618
Query: 763 VGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEV 822
+G++Y ++ + YG FVE+ PG+ L H+S++SS L A+DVVKVGD++ VK+ E+
Sbjct: 619 LGEVYLG-KVTRVEDYGAFVELMPGKLSLLHVSQISSERLKSAKDVVKVGDVLKVKVSEI 677
Query: 823 NDKGQLRLSRRALLPEADAEN 843
+D+G++++S + + +A+N
Sbjct: 678 DDQGRIKVSLKDVPENVEAKN 698
>gi|384547517|ref|YP_005736770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
gi|418561375|ref|ZP_13125866.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21262]
gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
gi|371977586|gb|EHO94850.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21262]
Length = 698
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERIKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|170698105|ref|ZP_02889185.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
IOP40-10]
gi|170136963|gb|EDT05211.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
IOP40-10]
Length = 714
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/754 (41%), Positives = 446/754 (59%), Gaps = 58/754 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A +L+ Q+++K R L + Y + + +
Sbjct: 252 AHGDLLAAYQLRDKQARSTKLKEV------------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE + G V + K+T V V ++ +K +R +I+ G R DGR
Sbjct: 285 EEALAAGTV---------AADKAT--------VGNVLFDIEAKIVRSQILNGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ERFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS+ AP
Sbjct: 501 KVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T+ VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITVEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADA---ENPP 845
V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAASQSDTPP 712
>gi|27467869|ref|NP_764506.1| polynucleotide phosphorylase [Staphylococcus epidermidis ATCC
12228]
gi|57866764|ref|YP_188423.1| polynucleotide phosphorylase [Staphylococcus epidermidis RP62A]
gi|251810705|ref|ZP_04825178.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876294|ref|ZP_06285161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis SK135]
gi|293366762|ref|ZP_06613438.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417656676|ref|ZP_12306359.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU028]
gi|417659021|ref|ZP_12308634.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU045]
gi|417909901|ref|ZP_12553634.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU037]
gi|417910791|ref|ZP_12554507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU105]
gi|417913449|ref|ZP_12557116.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU109]
gi|418605433|ref|ZP_13168758.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU041]
gi|418607665|ref|ZP_13170888.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU057]
gi|418609805|ref|ZP_13172939.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU065]
gi|418612132|ref|ZP_13175178.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU117]
gi|418616550|ref|ZP_13179474.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU120]
gi|418622183|ref|ZP_13184939.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU123]
gi|418624414|ref|ZP_13187089.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU125]
gi|418626760|ref|ZP_13189356.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU126]
gi|418628958|ref|ZP_13191474.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU127]
gi|418664694|ref|ZP_13226160.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU081]
gi|419768102|ref|ZP_14294239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770878|ref|ZP_14296940.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-K]
gi|420169811|ref|ZP_14676389.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM070]
gi|420172727|ref|ZP_14679225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM067]
gi|420182943|ref|ZP_14689076.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM049]
gi|420187522|ref|ZP_14693542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM039]
gi|420193990|ref|ZP_14699819.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM021]
gi|420197163|ref|ZP_14702887.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM020]
gi|420202013|ref|ZP_14707608.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM018]
gi|420209448|ref|ZP_14714885.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM003]
gi|420211837|ref|ZP_14717193.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM001]
gi|420214247|ref|ZP_14719526.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH05005]
gi|420216078|ref|ZP_14721300.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH05001]
gi|420220054|ref|ZP_14725044.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH04008]
gi|420221935|ref|ZP_14726860.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH08001]
gi|420224797|ref|ZP_14729635.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH06004]
gi|420227064|ref|ZP_14731837.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH05003]
gi|420229387|ref|ZP_14734093.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH04003]
gi|420231745|ref|ZP_14736390.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH051668]
gi|420234433|ref|ZP_14738996.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH051475]
gi|421607225|ref|ZP_16048471.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis AU12-03]
gi|81674891|sp|Q5HPR7.1|PNP_STAEQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81843823|sp|Q8CST1.1|PNP_STAES RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|27315414|gb|AAO04548.1|AE016747_45 polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis ATCC 12228]
gi|57637422|gb|AAW54210.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis RP62A]
gi|251805865|gb|EES58522.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295319|gb|EFA87846.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis SK135]
gi|291319063|gb|EFE59433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329736337|gb|EGG72609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU028]
gi|329736660|gb|EGG72926.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU045]
gi|341652510|gb|EGS76298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU037]
gi|341654979|gb|EGS78715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU105]
gi|341655731|gb|EGS79455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU109]
gi|374402530|gb|EHQ73555.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU041]
gi|374403782|gb|EHQ74777.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU057]
gi|374406141|gb|EHQ77044.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU065]
gi|374410140|gb|EHQ80901.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU081]
gi|374820014|gb|EHR84128.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU117]
gi|374820628|gb|EHR84704.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU120]
gi|374827558|gb|EHR91420.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU123]
gi|374827643|gb|EHR91504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU125]
gi|374831304|gb|EHR95046.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU126]
gi|374834952|gb|EHR98583.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU127]
gi|383361023|gb|EID38406.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-250]
gi|383362427|gb|EID39779.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-K]
gi|394241404|gb|EJD86818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM067]
gi|394243111|gb|EJD88485.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM070]
gi|394249406|gb|EJD94619.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM049]
gi|394255964|gb|EJE00900.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM039]
gi|394265970|gb|EJE10616.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM020]
gi|394266688|gb|EJE11313.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM021]
gi|394269986|gb|EJE14509.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM018]
gi|394278895|gb|EJE23207.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM003]
gi|394280347|gb|EJE24628.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM001]
gi|394283612|gb|EJE27777.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH05005]
gi|394287061|gb|EJE31035.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH04008]
gi|394289966|gb|EJE33836.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH08001]
gi|394292528|gb|EJE36270.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH05001]
gi|394294200|gb|EJE37886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH06004]
gi|394297565|gb|EJE41162.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH05003]
gi|394299153|gb|EJE42704.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH04003]
gi|394302287|gb|EJE45735.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH051668]
gi|394304236|gb|EJE47643.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIH051475]
gi|406657017|gb|EKC83410.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis AU12-03]
Length = 701
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 448/750 (59%), Gaps = 69/750 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV E+ H++
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF-------------QQEIIDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTI----LSENGYVSKDETVGIVETIP 385
I +E V V + ++ + + K+L+ L++ VLT EN K+E VG
Sbjct: 228 PIK-QEFVPVERDEDLVEKVKSLTEDKGLKDTVLTFDKQQRDENLDALKEEVVG------ 280
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L++ED + E +V +V + ++ + +RR I +
Sbjct: 281 HFLDEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIAD 315
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L +
Sbjct: 316 EKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPE 375
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
E KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S
Sbjct: 376 VE-KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSE 434
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
+ ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G
Sbjct: 435 VLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGM 488
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
EDA GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 489 EDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQP 548
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 549 REELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQA 607
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ ++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K
Sbjct: 608 MINRAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKV 666
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
EDV+K+GD ++VK+ E++ +G++ S + L
Sbjct: 667 EDVLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|86139387|ref|ZP_01057956.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
gi|85823890|gb|EAQ44096.1| polyribonucleotide nucleotidyltransferase [Roseobacter sp. MED193]
Length = 702
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 317/763 (41%), Positives = 439/763 (57%), Gaps = 73/763 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G+V T GET + +V A DFFPL V+YQE++
Sbjct: 1 MQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLTVHYQEKYY 60
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 61 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 120
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ LS P IA RVG G ++++NPT +M+D +LDL++AG+
Sbjct: 121 VAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP-- 325
DA++M+E LSE ++ AV+ DA++ + + + +L E + + P
Sbjct: 181 KDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVIDLIISLAEEAAN----EPFEFAAPDY 236
Query: 326 -ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
EL++ V+ E+ I +K R A+++ E TI
Sbjct: 237 SELFEAVKAAGDTEMRAAFAISDKQERTAAVAAARE----------------------TI 274
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L +E D+ ++ K++ + LR +V
Sbjct: 275 KAALSEEQLDD-----------------------------ANLGSAMKKLEAGILRGDVV 305
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G+R DGR D IR I S G+LPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 306 KTGKRIDGRATDEIRDIVSETGMLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHG 365
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGEVGR+G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 366 NFK-SNFLLHYNFPPYSVGEVGRVGGPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 424
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ ILSDI G
Sbjct: 425 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGSYAILSDILG 479
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +M+KAL+QAK GR HIL EM K
Sbjct: 480 DEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMNKALSG 539
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ S HAP I M+V +KI +IGSGGK ++ I+E +G + +D D+G +KI + +
Sbjct: 540 AAE-FSVHAPRIETMQVPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKIASPNG 597
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
S++K+ +I ++ P G IY +K I +G FV R+GL H+S++ + L
Sbjct: 598 DSIKKAYDMIYSIVAEPEEGKIYTGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNH 656
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
DV+K G V VKL+ +D+G++RLS + + E E P K
Sbjct: 657 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKMIDQETGEEMAPEK 699
>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis TXDOH]
gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|123726649|sp|Q2SZN9.1|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
thailandensis E264]
Length = 713
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/753 (41%), Positives = 448/753 (59%), Gaps = 57/753 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVLVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEVPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V +++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNNEYVLNPTREQIKASRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKDEALNARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A EL+ QI++K R L + Y + + +
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEV------------YAATSAKL---------------E 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EE + G V + K+T V + ++ +K +R +I+ G R DGR
Sbjct: 285 EEALAAGTV---------AADKAT--------VGNILFDLEAKIVRGQILSGEPRIDGRD 327
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + RF L
Sbjct: 328 TRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-DRFMLH 386
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESNGSSS
Sbjct: 387 YNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITESNGSSS 446
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMDF
Sbjct: 447 MASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMDF 500
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG +G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS+ AP
Sbjct: 501 KVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAGANTQLSEFAP 560
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + ++K I
Sbjct: 561 RMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAEAKKRI 619
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K G
Sbjct: 620 ENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLKEGQQ 678
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEA--DAENPP 845
V VK+I+ ++KG++RLS +ALL EA + PP
Sbjct: 679 VKVKVIQTDEKGRVRLSAKALLNEAAGQTDTPP 711
>gi|418635150|ref|ZP_13197535.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis VCU139]
gi|374842162|gb|EHS05608.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis VCU139]
Length = 698
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/747 (41%), Positives = 449/747 (60%), Gaps = 61/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V K+++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G D E+K LVE ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHD-------EIKRLVEF-------------QQQIVDHLQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ E + V + + + R +AL+ L+E VLT + + DE E + ++
Sbjct: 228 PVKS-EFIPVERDEALVSRVQALTEEKGLKETVLTFDKKQRDDNLDELKA--EIAAEFID 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ D + E++++ +V + ++ + +RR I + R
Sbjct: 285 EADPENELLIN-------------------------EVHAILNDLVKEEVRRLIADEKIR 319
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRP+ S G+LPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E K
Sbjct: 320 PDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE-K 378
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FP SVGE G + AP RREIGHG L E AL ++P + FPYTIR+ S + ES
Sbjct: 379 RFMHHYNFPNFSVGETGPVRAPGRREIGHGALGEHALRHIIPDTSKFPYTIRIVSEVLES 438
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 439 NGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMEDAL 492
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P L
Sbjct: 493 GDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPRAEL 552
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP + IM + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + + +
Sbjct: 553 SAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIYIGAVDQAMINR 611
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
SK II +T VG IY + ++K I YG FVEI G++ L HIS++S + + K EDV+
Sbjct: 612 SKEIIEAITREAEVGQIY-DAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDVL 670
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD + VK+ E++ +G++ S + L+
Sbjct: 671 KIGDTIKVKITEIDKQGRVNASHKVLV 697
>gi|359442879|ref|ZP_09232735.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20429]
gi|392535264|ref|ZP_10282401.1| polynucleotide phosphorylase/polyadenylase [Pseudoalteromonas
arctica A 37-1-2]
gi|358035239|dbj|GAA68984.1| polyribonucleotide nucleotidyltransferase [Pseudoalteromonas sp.
BSi20429]
Length = 708
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 432/744 (58%), Gaps = 55/744 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
Q + + G + +ETG + RQA GAV + G+T + +V DFFPL VN
Sbjct: 2 QAIIKEFKLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKREAQPGQDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR GGF KREGR D E L+ RLIDRP+RP GF +E Q+++ V+S +
Sbjct: 62 YQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPSGFVNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+A+S +P S I RVG + ++++NPT +E+E+SQLDL++AG+
Sbjct: 122 EIQPDMVAMIGTSAALAISGIPFSGPIGASRVGYINGEYVLNPTLKELEESQLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
D A+LM+E + L+E++++ AV G + + I ++ GKP T L
Sbjct: 182 DKAVLMVESEANVLAEDVMLGAVVYGHEQSQAIITAIEEFKAEAGKPTWDWTAPAKNVAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V IA +++ I +K+ R++AL V+KDE V ++ +L
Sbjct: 242 EDKVAAIAADKVGAAYLITDKVARKEALG---------------VAKDEVVAVLTA--EL 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E E D++ ++ +F + K +R RI G
Sbjct: 285 AEGESLDKQ-----------------------------EIGKIFGSLEKKIVRGRIASGE 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D IR + G+LPR HGSA+FTRGETQ+L TLG ++ +Q ID+L +
Sbjct: 316 KRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+P+ +FPY+IRV S IT
Sbjct: 376 -NHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVMPTLTEFPYSIRVVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL +AGVPIK S+AG+AMG+V + D+F ++LSDI G ED
Sbjct: 435 ESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKF------VVLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG GITA QMDIK+ GIT +M+ AL+QAK R HIL M + PS
Sbjct: 489 HLGDMDFKVAGTAAGITALQMDIKIEGITQEIMQIALKQAKAARLHILEVMDEAISAPSE 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS AP I+ MK+ +KI +IG GG ++ + EETG I+ DDGT+KI A D S
Sbjct: 549 ELSMFAPRIYTMKIPQKKIAEVIGKGGATIRQLTEETGT-TIEIGDDGTIKIAATDGESA 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I LT VG IY ++ I +G FV I PG++GL HIS++S+ + D
Sbjct: 608 ANAISRIEQLTAELEVGTIYEGKVVR-IVDFGAFVNILPGKDGLVHISQISTERVNNVAD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+ G V VK++EV+ +G++RLS
Sbjct: 667 HLSEGQEVKVKVLEVDRQGRVRLS 690
>gi|339018216|ref|ZP_08644356.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter tropicalis NBRC 101654]
gi|338752685|dbj|GAA07660.1| polyribonucleotide nucleotidyltransferase RNA binding S1
[Acetobacter tropicalis NBRC 101654]
Length = 730
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 326/770 (42%), Positives = 446/770 (57%), Gaps = 67/770 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I + R +++ETG + RQA GAV VT GET++ + A DFFPL VNYQE+
Sbjct: 22 EIEWAGRPLVLETGKIARQADGAVVVTYGETVVLCTAVGAKNVKAGQDFFPLTVNYQEKA 81
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR ++E LV RLIDRP+RP +GF +E Q+++ VL++D + P
Sbjct: 82 YAAGKIPGGFFKREGRPSENETLVSRLIDRPIRPLFPEGFRNEVQVIATVLTHDMENDPS 141
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A+ LS +P +A RVG FI+NPT ++M+D+ LDL++AG+++ +L
Sbjct: 142 IPALIGCSAALTLSGIPFFGPVAAARVGYKDGAFILNPTLEQMKDAALDLVVAGTEEGVL 201
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSE+++++AV G A + + + +L E K P L +L V
Sbjct: 202 MVESEASELSEDVMLEAVTFGHTAFQPVIEAIISLAEHAAKAPWDLPEASKEEQKLRTRV 261
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ + + + K K R + + + +E +L L+
Sbjct: 262 DKVGRKLIADAYKEKVKQARYEKIGAAKEAILEKLAA----------------------- 298
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EE+ VD + PML K++ + +R +++ G R D
Sbjct: 299 ---EELDVDA---------------AKPML----------KDLEADVVRTAVLKTGLRID 330
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S G+LPRAHGS+LFTRGETQ+L V TLG Q Q ID LE + F
Sbjct: 331 GRDLVTVRPIVSEVGILPRAHGSSLFTRGETQALVVTTLGTAQDEQVIDALEGEYRTN-F 389
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GRIG+P RREIGHG LA RA+ P+LPS DFPYT+RV S ITESNG
Sbjct: 390 LLHYNFPPFSVGECGRIGSPGRREIGHGKLAWRAIHPLLPSRKDFPYTLRVVSEITESNG 449
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP+K +AG+AMG++ + F +LSDI G ED GD
Sbjct: 450 SSSMATVCGSSLALMDAGVPLKRPVAGIAMGLIKEGKNFA------VLSDILGDEDHLGD 503
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ IT +MK AL QA+DGR HIL EM K +S
Sbjct: 504 MDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARDGRLHILGEMSKALTEGRTDVSS 563
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I + V EKI +IGSGGK ++ I+E +G + +D DDGT+ I A +S + +K
Sbjct: 564 TAPKITTLTVPREKIRDVIGSGGKVIREIVEYSGAK-VDIGDDGTITIAA--MSDDQANK 620
Query: 752 AI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
AI I+ + P +G IY +K+ A +G FV R+GL HISELS + K DVV
Sbjct: 621 AIERINGIVAEPELGRIYDGKVVKT-ADFGAFVNFLGARDGLVHISELSQGRVGKTTDVV 679
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPE--ADAENPPVKLPTGDPTKDA 857
K GD V VK+I +D+G+++LS R + E AD P P +DA
Sbjct: 680 KQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADITETVGAKPARAPRRDA 729
>gi|289578380|ref|YP_003477007.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
gi|289528093|gb|ADD02445.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacter
italicus Ab9]
Length = 700
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/753 (41%), Positives = 445/753 (59%), Gaps = 59/753 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R+++V+TG + +QA+GA V G+T++ + C + P E DFFPL V Y+E
Sbjct: 5 TFEMELAGRKLIVQTGKVAQQANGAAWVKYGDTVVLVTACASKEPREGIDFFPLTVEYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ QI++ +LS D
Sbjct: 65 RLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPHGYRNDVQIIATILSVDPDVQ 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V VGLV +F++NP + E S + L+++G+ DA
Sbjct: 125 PEIVAMIGSSVALSISDIPFNGPTGAVAVGLVDGQFVINPNHDQREKSLMHLVVSGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + EE +++A+ + +++I ++ +VE G PK + EL +
Sbjct: 185 IVMVEAGAKEVPEETMLEAIMYAHEYIKQIVEFIEEIVEEVGVPKSEVILHEIDKELEEK 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V A +++ + L+ K R L +E++VL E PD L D
Sbjct: 245 VRAYATQKIYEALRTPEKKERNDNLDKVEQEVLEYFKEE--------------YPDNLAD 290
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V + + +R+ I E R
Sbjct: 291 IDE------------------------------------VLYNIMKEQMRKMITEEKIRV 314
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI G+LPR HGSA+FTRG+TQ L V TLG Q +D + D+E KR
Sbjct: 315 DGRGLDDIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVATLGALGDIQILDGI-GDEEAKR 373
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGEV + P RREIGHG LAERALEPV+PS+ +FPYTIR+ S + SN
Sbjct: 374 YMHHYNFPPYSVGEVRPLRGPGRREIGHGALAERALEPVIPSEEEFPYTIRLVSEVLSSN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + D +L+DI G ED G
Sbjct: 434 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDVVS------VLTDIQGIEDFLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++K AL++A+ GR +IL++ML+ P LS
Sbjct: 488 DMDFKVAGTEKGITAIQMDIKIPGIDKEILKMALEKARKGRLYILSKMLEVIKEPRKELS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M V PEKI IIG GK + II ETGV+ ID E+DG + ITA DL S E++
Sbjct: 548 IYAPRVIRMVVDPEKIRDIIGPAGKTISKIIAETGVK-IDIEEDGRLYITASDLKSGERA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K +I +T TVG+IY ++ I P+G FVEIAPG+EGL HIS+LS + K EDVVK
Sbjct: 607 KQMIEAITKDITVGEIYLG-KVLRITPFGAFVEIAPGKEGLVHISKLSKKRVQKVEDVVK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VGD + VK+ +++ +G++ LSR+ LP+ + E
Sbjct: 666 VGDDILVKVTDIDKQGRISLSRKDALPDEEEEK 698
>gi|206972738|ref|ZP_03233672.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
gi|206732338|gb|EDZ49526.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1134]
Length = 712
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A E++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEEDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGQGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIPEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|153207996|ref|ZP_01946530.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
Goat Q177']
gi|165918905|ref|ZP_02218991.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii Q321]
gi|212218334|ref|YP_002305121.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
CbuK_Q154]
gi|226702641|sp|B6J6S7.1|PNP_COXB1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120576196|gb|EAX32820.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii 'MSU
Goat Q177']
gi|165917375|gb|EDR35979.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii Q321]
gi|212012596|gb|ACJ19976.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
CbuK_Q154]
Length = 696
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/744 (41%), Positives = 435/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ ETG M RQA+GAV V G+T++ SV E DFFPL VNYQE+ AA
Sbjct: 10 YGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GG+FKREGR + E L RLIDRPLRP KGF +E Q+++ VLS D D A
Sbjct: 70 GKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS +P + + RVG G ++++NP+ E++DS LDL++AG+ DA+LM+E
Sbjct: 130 ILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
L E +++ AV G A++ + ++ G K + PP + +E++
Sbjct: 190 SEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKW----EWEPPTVNTALEKLV 245
Query: 336 GEE----LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+ L K QI+ K R+ + ++ +++L D E
Sbjct: 246 VEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLA----------DRAA------------E 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E EE V+ E ++ ++F E+ + +R +I+ G R D
Sbjct: 284 REGEENAVN-----------------------EHELAVIFHELERRIVREQILTGQPRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI+ + G+LPR+HGSALFTRGETQ+L V TLG ++ AQ ID+L+ D + + F
Sbjct: 321 GRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQ-EEF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP VGEVG + P RREIGHG LA+RA+ PV+P+ + FPY IRV S I ESNG
Sbjct: 380 IFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDKFPYVIRVVSEILESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG LAL DAGVP K +AG+AMG++ + D++ +LSDI G ED GD
Sbjct: 440 SSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GIT +M++AL QAK+GR HIL+ M K P + +S
Sbjct: 494 MDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKVLDKPRSQVSD 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP MK+ PEKI +IG GG ++ I E T AID DDGT+KI A E +K
Sbjct: 554 LAPQYVTMKINPEKIRDVIGKGGVVIREITEATNC-AIDISDDGTIKIAAHTTEEGEAAK 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT +G +Y +K I +G FV+I P +GL HIS+++ + D ++
Sbjct: 613 RRIEELTAEVELGKVYEGTVVK-ITDFGAFVQILPNTQGLVHISQIAQERVENVRDYLEE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G ++ VK+IE++ +G++RLS + +
Sbjct: 672 GQVIRVKVIEIDRQGRVRLSMKQI 695
>gi|121535268|ref|ZP_01667082.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
gi|121306153|gb|EAX47081.1| Polyribonucleotide nucleotidyltransferase [Thermosinus
carboxydivorans Nor1]
Length = 699
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 317/746 (42%), Positives = 439/746 (58%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ R ++VETG M +QA+GAV + G+T + + + P + DFFPL V+Y+E
Sbjct: 3 TFQMQLAGRALVVETGKMAKQANGAVLIRYGDTAVLVTATASAEPRQGIDFFPLTVDYEE 62
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREGR + +L RLIDRP+RP +GF ++ +++ VLS D +
Sbjct: 63 RLYSVGKIPGGFIKREGRPSEAAILAGRLIDRPIRPLFAEGFRNDVHVVATVLSVDQDNP 122
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD A+ A A+++S++P + I GVRVG V +FI+NPT ++ E S L+L++AG+ DA
Sbjct: 123 PDIPAMIGASCALSISDIPFNGPIGGVRVGRVDGQFIINPTVEQQERSDLNLVVAGTKDA 182
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+LM+E + + EE ++ A+ G D +REI + +V GKPK + PPE+
Sbjct: 183 VLMVEAGANEVPEEAILDAITFGHDVIREIVAFQEKIVAEVGKPKREIPLYEVPPEIDAA 242
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V E E+L KD T PD L
Sbjct: 243 VREYVTEKL----------------------------------KDAV-----TNPDKLMR 263
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E++ ++V E E + + P + K D+ V ++V + +R+ I R
Sbjct: 264 EEQIKQV--KAEATEHFLVLYPDNAK---------DIAYVMQKVLKEIVRKMITIDKVRP 312
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPIS GLL R HGS LFTRG+TQ L V TLG Q +D L +E KR
Sbjct: 313 DGRKLDEIRPISCEVGLLRRTHGSGLFTRGQTQVLTVTTLGAIGDEQILDGL-GVEESKR 371
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FP SVGE P RREIGHG LAERAL PV+P + +FPYTIR+ S + ESN
Sbjct: 372 YMHHYNFPAFSVGETRPARGPGRREIGHGALAERALLPVIPPETEFPYTIRLVSEVLESN 431
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+SM SVCG L+L DAGVPIK ++GVAMG+V + D + IL+DI G EDA G
Sbjct: 432 GSTSMGSVCGSTLSLMDAGVPIKAPVSGVAMGLVKEGDHY------TILTDIQGIEDALG 485
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG G+TA QMDIK+ GIT ++ AL+QA+ GR IL +ML+ P LS
Sbjct: 486 DMDFKVAGTAKGVTAIQMDIKISGITKEILADALEQARRGRLFILDKMLEVIKEPRPELS 545
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I M++ P+KI +IG GGK +K II+ETGV ID EDDG V I A D+ + +K+
Sbjct: 546 PYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGV-TIDIEDDGKVFIAAVDVEAGKKA 604
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
II NL VG +Y ++ + +G FVEI PG+EGL HIS+L+ + K EDVVK
Sbjct: 605 VRIIENLVRDVEVGGVYMG-KVTRLMNFGAFVEILPGKEGLVHISQLARERVNKVEDVVK 663
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD + VK+ E++ +G++ LSR+ LL
Sbjct: 664 VGDEILVKVTEIDRQGRINLSRKELL 689
>gi|320537764|ref|ZP_08037687.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
F0421]
gi|320145387|gb|EFW37080.1| polyribonucleotide nucleotidyltransferase [Treponema phagedenis
F0421]
Length = 700
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/748 (41%), Positives = 444/748 (59%), Gaps = 58/748 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V GD ++++ETG + +QA+GA+ G + + +VC +D E D+ PL V+Y E
Sbjct: 4 TVSYKIGDSELILETGRLAKQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYNE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++ AAG+ GGF KREGR KD E+LV RLIDRP+RP K F + QI+ +S D ++
Sbjct: 64 KYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKDFGRDIQIIPTCVSSDMINP 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD LAV A+ AV +S++P + +A R+ V ++++NPT ++++ +++++++AG+ +
Sbjct: 124 PDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTKEG 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I M+EG +SEE+++ A++ + ++ I + + L CGK K+ E +
Sbjct: 184 ITMVEGGAHEVSEEVMLTALEKAHEFIKIICDLQEQLRNACGKEKLPLVPLSVELENKQA 243
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ + A L + L +K K RR A +++ I E + LED
Sbjct: 244 IHDEAYPRLSEALYVKGKFERRAACDAVK------------------ADIAEKYAEQLED 285
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E + + LF+ +F ++ LR I++ G R
Sbjct: 286 EVQTK-------------------------LFN-----TLFDDMEYHILRENILDKGLRV 315
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + IRPI+ G+LPR HGSA+FTRGETQSLAV+TLG Q D++E D +
Sbjct: 316 DGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRR-EN 374
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR+G RREIGHG LA R+L P++PS FPYT+RV S I ESN
Sbjct: 375 FILHYNFPPFSVGEVGRMGT-GRREIGHGYLAHRSLSPMIPSREKFPYTVRVVSEILESN 433
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGG L+L AGVP+K +AG+AMG++ D D + ILSDI G ED G
Sbjct: 434 GSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYA------ILSDILGEEDHLG 487
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+GIT FQMDIK+ G++ +MK AL QAK GR HIL M + P+ +S
Sbjct: 488 DMDFKVAGTENGITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQTISKPNADIS 547
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
K+AP I +K+ +KI +IG GGK +K++ E+ V I+T++DGTV I KD S +
Sbjct: 548 KYAPRIECVKIAVDKIGALIGPGGKNIKALSEQYQV-TINTDNDGTVTIYGKDSQSALDA 606
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
KA + + P VG IY+ +K I +G FVEI PG+EGLCHIS+LS + K DV+K
Sbjct: 607 KAAVIGVVEEPEVGRIYQGT-VKKIMEFGAFVEILPGKEGLCHISKLSRERVGKVGDVLK 665
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ VKL+E++ +L LS L E
Sbjct: 666 EEQQIPVKLLEIDKMNRLNLSYIDALEE 693
>gi|320540181|ref|ZP_08039836.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
gi|320029847|gb|EFW11871.1| polynucleotide phosphorylase/polyadenylase [Serratia symbiotica
str. Tucson]
Length = 716
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 318/773 (41%), Positives = 446/773 (57%), Gaps = 69/773 (8%)
Query: 77 PVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPS 136
P++ D + P+ K +G + +ETG M RQA+ AV V+ +T ++ +V
Sbjct: 4 PLIKDII--LLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK 61
Query: 137 EPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHET 196
FFPL VNYQER AAGR G FF+REGR + E L RLIDRP+RP F +E
Sbjct: 62 PGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDNFLNEV 121
Query: 197 QILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME 256
Q+++ V+S + PD +A+ A A++LS +P + I RVG + D++++NPTT E++
Sbjct: 122 QVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELK 181
Query: 257 DSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM 316
S LDL++AG+ A+LM+E D LSE+ ++ AV G + + + +LV GKPK
Sbjct: 182 ISSLDLVVAGTAGAVLMVESEADVLSEDQMLGAVVFGHQQQQVVIESINSLVAEAGKPKW 241
Query: 317 LDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDE 376
+ L+ V E+A L I K R + ++++ V
Sbjct: 242 DWQAPVVNAALHARVAELAEARLGDAYHITEKQERYAQVDAIKDSV-------------- 287
Query: 377 TVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTS 436
VET+ L++DE D + D + V
Sbjct: 288 ----VETL--LVQDETLDASEIQD-----------------------------ILSSVEK 312
Query: 437 KFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMA 496
+R R++ G R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + A
Sbjct: 313 NVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 372
Query: 497 QRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDF 556
Q +D L + + F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DF
Sbjct: 373 QNLDELMGE-KTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKLEDF 431
Query: 557 PYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTP 616
PYT+RV S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F
Sbjct: 432 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNF------ 485
Query: 617 LILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILA 676
++LSDI G ED GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL+
Sbjct: 486 VVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILS 545
Query: 677 EMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGT 736
M + P +S+ AP IH +++ P+KI +IG GG ++++ EET I+ +DDGT
Sbjct: 546 VMEQAISVPRGDISQFAPRIHTIRISPDKIKDVIGKGGSVIRALTEETDT-TIEIDDDGT 604
Query: 737 VKITAKDLSSLEKSK-AI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCH 793
VKI A + EK+K AI I +T VG IY+ ++ I +G FV I G+EGL H
Sbjct: 605 VKIAA---TGGEKAKFAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVH 660
Query: 794 ISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENPP 845
IS+++ + K D +++G V VK++EV+ +G++RLS + A +PE AE+PP
Sbjct: 661 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATMPE--AESPP 711
>gi|384550031|ref|YP_005739283.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 698
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDKIEVKITEIDKQGRVNASHRAL 696
>gi|418430250|ref|ZP_13003166.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718645|gb|EIK06603.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS3a]
Length = 698
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGCIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|71908066|ref|YP_285653.1| polynucleotide phosphorylase [Dechloromonas aromatica RCB]
gi|123760455|sp|Q47D98.1|PNP_DECAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|71847687|gb|AAZ47183.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Dechloromonas
aromatica RCB]
Length = 715
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/754 (41%), Positives = 436/754 (57%), Gaps = 57/754 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+GD Q+ +ETG + RQA GAV V+ ET++ +V A DFFPL V+YQE+ AA
Sbjct: 11 YGDHQVTIETGEVARQAGGAVLVSMEETVVLVTVVAAKNAKPGQDFFPLTVDYQEKTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L CRLIDRP+RP GFY+E Q+++ V+S + D A
Sbjct: 71 GRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPDGFYNEVQVIATVMSLNPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S VP + I RVG + ++++ PT +++ SQLDL++AG++ A+LM+E
Sbjct: 131 LIGASAALAISGVPFNGPIGAARVGYIDGQYVLCPTLSQLKGSQLDLVVAGTEAAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
D LSEE+++ AV G +++ N + LVE GKP+ L + +
Sbjct: 191 SEADQLSEEVMLGAVVFGHTEMQKAINAINELVEEAGKPEWEWEAAPKDEALVASLSALV 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+L + I K R +A+ ++ + + L + DE T+ +L
Sbjct: 251 SAKLEEAYNITVKQTRSQAVKAIRAEAVAALCTGAEGAPDEN-----TVGNL-------- 297
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
F E+ + +R RI+ G R DGR
Sbjct: 298 -----------------------------------FHEIEASIVRGRILSGAPRIDGRDT 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
+RPI+ R G+LPR HGSALFTRGETQ+LAV TLG + Q ID L + RF L Y
Sbjct: 323 RTVRPITMRSGVLPRTHGSALFTRGETQALAVATLGTNRDEQIIDALAGEYR-DRFMLHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+ PP + GE GR+G P RREIGHG LA+RAL VLP DF Y++R+ S ITESNGSSSM
Sbjct: 382 NMPPYATGECGRVGTPKRREIGHGRLAKRALLAVLPKPEDFSYSMRLVSEITESNGSSSM 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCGGCLAL DAGVP+K +AG+AMG++ D + F +L+DI G ED GDMDFK
Sbjct: 442 ASVCGGCLALLDAGVPLKAHVAGIAMGLIKDGNRFA------VLTDILGDEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG+ GITA QMDIK+ GIT +M+ AL QAK+ R HIL M + + P +S +AP
Sbjct: 496 VAGSTTGITALQMDIKIQGITKEIMQVALAQAKEARIHILNLMQESAAGPREEMSAYAPR 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
++ K+ PEKI +IG GG ++++ EETG ID +DDGT+ I A + +++ I
Sbjct: 556 LYTFKINPEKIRDVIGKGGAVIRALTEETGT-TIDIQDDGTITIAATSGEAAAAARSRID 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+T +G IY +K I +G V + PG++GL HIS+++ + K ED VK G +V
Sbjct: 615 AITAEVEIGKIYEGTVLK-ILDFGAIVSVLPGKDGLLHISQIAQERVNKVEDYVKEGQIV 673
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
VK++E +D+G+++LS +A + PV P
Sbjct: 674 RVKVLETDDRGRVKLSMKAAAADEGTVAQPVAAP 707
>gi|418599643|ref|ZP_13163123.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21343]
gi|374396301|gb|EHQ67542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21343]
Length = 698
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/748 (40%), Positives = 452/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPVERDEALVERVKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S R L
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRVL 696
>gi|379795641|ref|YP_005325639.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSHR1132]
gi|356872631|emb|CCE58970.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 698
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/748 (40%), Positives = 458/748 (61%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGFIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E+K LV+ + +++D H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIKRLVDF--QQQIID-----------HIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + R K+L+ L+E VLT + +D+ + + E + +
Sbjct: 228 PVK-QEFIPVERDEVLVERVKSLTEEKGLKETVLTFDKQQ----RDDNLDNLKEEIVSEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + ++ + +RR I +
Sbjct: 283 VDEEDPENELLIK-------------------------EVYSILNDLIKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMDHMLQTIEQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG IY+ +K I YG FV + PG++ L HIS++S + + K ED
Sbjct: 610 NRAREIIEEITREAEVGQIYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKDRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|333897111|ref|YP_004470985.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112376|gb|AEF17313.1| Polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 700
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/740 (41%), Positives = 438/740 (59%), Gaps = 59/740 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R+++V+TG + + A+G+ V G+T++ + C + P E DFFPL+V+Y+ER + G+
Sbjct: 12 RKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEERLYSVGKI 71
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D P+ +A+
Sbjct: 72 PGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQPEIVAMIG 131
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
+ +A+++S++P + V V LV FI+NP + E S L L ++G+ DAI+M+E
Sbjct: 132 SSVALSISDIPFNGPTGSVSVALVDGNFIINPDLEAREKSDLHLTVSGTKDAIMMVEAGA 191
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + EE+++ A+ + +++I ++ +V+ G PK + L + V E A E+
Sbjct: 192 NEVPEEVMLDAIMYAHEYIKQIVEFIEGIVKEVGLPKAEVIVHEIDDNLEQQVREFATEK 251
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ L+ + K R + +EE+VL KDE PD LED DE
Sbjct: 252 IYNALRTEEKKERNDNIDKVEEEVLEHF-------KDEY-------PDNLEDIDE----- 292
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
V +T + +R+ I E R DGR D I
Sbjct: 293 -------------------------------VLYTITKEQMRKMITEEKIRVDGRGLDDI 321
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPI+ G+LPR HGSA+FTRG+TQ + V TLG Q +D L D+E KR+ Y+FP
Sbjct: 322 RPITCDVGVLPRTHGSAIFTRGQTQVMTVATLGPLGDIQILDGL-GDEESKRYMHHYNFP 380
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + P RREIGHG LAERALEP++PS+ +FPYTIR+ S + SNGS+S ASV
Sbjct: 381 PFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIRLVSEVLSSNGSTSQASV 440
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG LAL DAGVPIK +AGVAMG++ + D IL+DI G ED GDMDFKVAG
Sbjct: 441 CGSTLALMDAGVPIKAPVAGVAMGLIKEGDIVS------ILTDIQGIEDFLGDMDFKVAG 494
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E GITA QMDIK+ GI ++ AL++A+ GR IL +ML+ P LS +AP I
Sbjct: 495 TEKGITAIQMDIKIAGIDRDILSLALEKARKGRLFILNKMLETIKEPRKELSPYAPRIIS 554
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
+ V PEKI IIG+GGK + II +TGV+ ID EDDG V I++ DL + EK+K II +T
Sbjct: 555 LNVDPEKIRDIIGAGGKTINKIIADTGVK-IDIEDDGRVFISSTDLKAGEKAKMIIEAIT 613
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG IY ++ +A +G FVEIAPG+EGL HIS+L + K EDVV +GD + VK
Sbjct: 614 KDVEVGSIYLG-KVTRLASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVVNIGDEILVK 672
Query: 819 LIEVNDKGQLRLSRRALLPE 838
+ E++ +G++ LSR+ LPE
Sbjct: 673 VTEIDKQGRINLSRKDALPE 692
>gi|313673255|ref|YP_004051366.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940011|gb|ADR19203.1| polyribonucleotide nucleotidyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 706
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/736 (41%), Positives = 440/736 (59%), Gaps = 55/736 (7%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
I++ETG +Q +G++ GET++ + ++ E DFFPL VNY E+F + G+ G
Sbjct: 19 IILETGWKAKQTNGSIWAKHGETVVLVTAVMSKKVPEDIDFFPLTVNYIEKFYSVGKIPG 78
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
GF KRE + D E L+ RLIDRPLRP GF +E QI++ V+S D + PD L++ AA
Sbjct: 79 GFLKRESKPSDKETLIARLIDRPLRPIFPDGFRNEVQIVATVVSSDQKNSPDVLSINAAS 138
Query: 221 IAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDF 280
A+ +S++P + + VRVG + ++I+NP + + ++++LAG++DAI+M+E
Sbjct: 139 AALMISDIPFNGPVGAVRVGKLNGEYIINPDAELFDQLVMNIVLAGTEDAIVMVEAGLKN 198
Query: 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELV 340
+SEE +++A + G A+REI K + E G PK P ++ + V + L
Sbjct: 199 VSEEEVVEAFEKGHQAIREIIAVQKKMREELGLPKAEYKDFSVPADILEKVYAECKQSLF 258
Query: 341 KVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVD 400
+ K K + A+ ++++ Y K +T +L E D+ E
Sbjct: 259 DAVMTKGKKEKYDAIERVKDE---------YFEKLKT--------ELGEAFDQVES---- 297
Query: 401 GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRP 460
L+SE + EV K R +E R DGR D IRP
Sbjct: 298 --------------------LYSEA-----YHEVEKKIFREITLENKIRVDGRRYDEIRP 332
Query: 461 ISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520
I GLLPRAHGSALFTRGETQ+L TLG K +Q +D++E + KRF L Y+FPP
Sbjct: 333 IDIEVGLLPRAHGSALFTRGETQALVSTTLGTKMDSQLVDDIEGNSS-KRFMLHYNFPPF 391
Query: 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCG 580
SVGEVGR+GAP RRE+GHG LAERAL V+P ++DFPYTIRV S I ESNGSSSMA+VCG
Sbjct: 392 SVGEVGRMGAPGRREVGHGALAERALSFVIPDESDFPYTIRVVSEILESNGSSSMATVCG 451
Query: 581 GCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 640
GCL+L DAGVP+K +AG+AMG++ + + ILSDI G ED GDMDFKVAG +
Sbjct: 452 GCLSLMDAGVPVKDMVAGIAMGLIYEKGRYA------ILSDIMGIEDHLGDMDFKVAGTK 505
Query: 641 DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMK 700
DGITA QMDIK+ G+++ ++++AL A+ GR HIL++M + P LS +AP +
Sbjct: 506 DGITALQMDIKIEGLSMDLVREALAAARVGRLHILSKMQEVLASPRPDLSPYAPRFVTIN 565
Query: 701 VKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMV 760
V PEK+ LIIG GK +K+IIEETGV +ID D G V I A S++ + ++I +
Sbjct: 566 VDPEKVGLIIGPAGKNIKAIIEETGV-SIDILDGGVVNIFASSKDSIDSAISMIEAILGE 624
Query: 761 PTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLI 820
T+ +Y+ ++K + YG FVEIAPG E L H+S+ S + +K+GD+V+VK +
Sbjct: 625 LTIDKVYKG-KVKKLMDYGAFVEIAPGIEALLHVSQYSFEKVDDLSKYLKIGDVVEVKYL 683
Query: 821 EVNDKGQLRLSRRALL 836
+++G+ ++SR+A L
Sbjct: 684 GKDERGRHKISRKATL 699
>gi|312112862|ref|YP_004010458.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
gi|311217991|gb|ADP69359.1| polyribonucleotide nucleotidyltransferase [Rhodomicrobium vannielii
ATCC 17100]
Length = 709
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/744 (41%), Positives = 444/744 (59%), Gaps = 61/744 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNYQER 151
++ +G R++ +ETG + RQA GAV GET + +V + + ++PS DFFPL VNYQE+
Sbjct: 8 EVEWGGRKLTLETGRIARQADGAVLAHYGETSVLATV-VGERDADPSKDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E LV RLIDRP+RP GF +ETQ++ VLS+D + P
Sbjct: 67 AYAAGKIPGGYFKREGRPTERETLVSRLIDRPIRPLFAHGFKNETQVIVTVLSHDMENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D +A+ AA A+ +S +P IA RVG ++I+NPT+ +++ S LDL++AG+ DA+
Sbjct: 127 DIVAMVAASAALTISGLPFLGPIAASRVGYSKGEYILNPTSDQIKASDLDLVVAGTVDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
LM+E LSE++++ AV GQ + + + + L E K TI E V
Sbjct: 187 LMVESEAKELSEDIMLGAVVFGQQGYKPVIDAIIGLAEQAAKEPW--TIPDAKNEFESKV 244
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ ++L K QI K R+ ++ + K + +VS + T G
Sbjct: 245 KKLVEKDLKKAFQIAGKQERQTKVAEAKAKAIAE-----FVSAESTAG------------ 287
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ V FKE+ +R I++ G+R D
Sbjct: 288 -------------------------------EKNKVAEAFKEIEKHVVRTSILKTGKRID 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI S+ G++PR HGS+LFTRGETQ+L V TLG + Q ID+LE + + F
Sbjct: 317 GRDLKTVRPILSQVGVIPRTHGSSLFTRGETQALVVATLGTGEDEQWIDSLEGTYK-ESF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P++P + FPYT+RV S ITESNG
Sbjct: 376 LLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVHPMMPKSDTFPYTVRVVSEITESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG L+L DAGVPIK +AG+AMG++ + + +LSDI G ED GD
Sbjct: 436 SSSMASVCGASLSLMDAGVPIKAPVAGIAMGLIKEAEGVA------VLSDIIGDEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG+ +G+TA QMDIK+ GIT +MK AL+QA +GR HIL EM K L +
Sbjct: 490 MDFKVAGSANGVTALQMDIKITGITTEIMKIALEQAHEGRLHILGEMSKALNAARGELGE 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP I + + +KI +IGSGG ++SI+EE+G + ID DDGTVKI A +LSS++ +
Sbjct: 550 FAPRIETITIPTDKIREVIGSGGSVIRSIVEESGAK-IDISDDGTVKIAAANLSSIQDAI 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I ++ P VG IY+ +K I +G FV R+GL HIS+++ L A +VVK
Sbjct: 609 NRIKSIASEPEVGVIYKGKVVK-IVEFGAFVNFFGSRDGLVHISQMAERRLKHASEVVKD 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G V VK + +++G++RL+ + +
Sbjct: 668 GQEVYVKCLGFDERGKVRLTMKGI 691
>gi|167630367|ref|YP_001680866.1| polynucleotide phosphorylase [Heliobacterium modesticaldum Ice1]
gi|257096694|sp|B0THS2.1|PNP_HELMI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167593107|gb|ABZ84855.1| polyribonucleotide nucleotidyltransferase [Heliobacterium
modesticaldum Ice1]
Length = 709
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/738 (41%), Positives = 435/738 (58%), Gaps = 59/738 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R + +ETG + +QA G+V G+T++ + + P DFFPL V+Y+ER A G+
Sbjct: 11 RTLTIETGRVAKQAGGSVLARYGDTVVLVTATGSKEPRPGIDFFPLTVDYEERLYAVGKI 70
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR + +L RLIDRP+RP KGF ++ Q+++ V+S D PD + +
Sbjct: 71 PGGFIKREGRPTEKAILSARLIDRPIRPLFPKGFRNDVQVVATVMSVDQDCPPDIVGMIG 130
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A A++LS++P I GV VG V K ++NPT ++ E S + L++AG+ DA++M+E
Sbjct: 131 ASCALSLSDIPFEGPIGGVLVGRVDGKLLINPTMEQAEKSDMHLVVAGTKDAVMMVEAGA 190
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ + EE +I+A+ G ++ I + +V + GKPK +K PEL + V E G++
Sbjct: 191 NEVPEEDMIEAIMFGHQEIQRIVAFQEEMVAVAGKPKREVPLKQINPELEQAVREYVGDK 250
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
L +Q +K+ R + ++ + ET+ LL E+E+
Sbjct: 251 LRNAIQNPDKLSREADIQAV---------------------MKETVEALLPHFPEEEK-- 287
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
D++ V + + +R+ I +R DGR D I
Sbjct: 288 ---------------------------DIRTVLDTMEKEIVRKLITVDKQRPDGRKMDEI 320
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RPIS G+LPR HGS LFTRG+TQ L V TLG Q +D L +E KR+ Y+FP
Sbjct: 321 RPISVEVGILPRTHGSGLFTRGQTQVLNVCTLGTIADLQILDGL-GVEESKRYMHHYNFP 379
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + P RREIGHG LAERAL PV+PS+++FPYTIR+ S ESNGS+SMASV
Sbjct: 380 PYSVGETRPMRGPGRREIGHGALAERALLPVIPSEDEFPYTIRLVSEAVESNGSTSMASV 439
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG L+L +AGVPIK +AG+AMG++ + + F ILSDI G ED GDMDFKVAG
Sbjct: 440 CGSTLSLMNAGVPIKKPVAGIAMGLIKEGEHFS------ILSDIQGMEDHLGDMDFKVAG 493
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
DG+TA QMDIK+ G+ ++ +ALQQA+ GR IL +ML P+ +S +AP I
Sbjct: 494 TADGVTALQMDIKIKGVNREILTQALQQARKGRLFILDKMLAVIDKPAAEMSPYAPRIIT 553
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M + P+KI +IG GGK + II ETGV+ ID EDDG + I A D + K+ II ++T
Sbjct: 554 MSIDPDKIREVIGPGGKVINKIIAETGVK-IDIEDDGRIFIAATDTEAANKAVRIIESIT 612
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG +Y ++ I +G FVE+ PG+EGL HIS+L+ +AK EDVVK+GD V VK
Sbjct: 613 ADVEVGKVY-TGKVTRIMNFGAFVEVLPGKEGLIHISQLAEERVAKVEDVVKIGDEVTVK 671
Query: 819 LIEVNDKGQLRLSRRALL 836
++E++ +G++ LSR+ +L
Sbjct: 672 VVEIDKQGRINLSRKEVL 689
>gi|110678016|ref|YP_681023.1| polynucleotide phosphorylase [Roseobacter denitrificans OCh 114]
gi|123065912|sp|Q16CF6.1|PNP_ROSDO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|109454132|gb|ABG30337.1| polyribonucleotide nucleotidyltransferase [Roseobacter
denitrificans OCh 114]
Length = 711
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 317/758 (41%), Positives = 435/758 (57%), Gaps = 73/758 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G+ + +ETG + RQA G+V T GET + +V A DFFPL V+YQE++
Sbjct: 9 IEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRPLRP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S P IAG RVG ++I+NPT +M+D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGAPFMGPIAGARVGFEDGEYILNPTVDDMQDLRLNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP-- 325
DA++M+E LSE ++ AV+ DA++ + + + L E C K + PP
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDCAK----EPFDFSPPDY 244
Query: 326 -ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
EL V+ E+ I +K R A+++ E ++ LS+
Sbjct: 245 SELSAAVKAAGETEMRAAFAISDKQERTTAVAAARETIMAALSDE--------------- 289
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+K P L S K + + LR +V
Sbjct: 290 ------------------------------QKEDPNLGS------AMKGLEASILRGDVV 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G+R DGR D IR I GLLPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 314 KTGKRIDGRKTDEIRDIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP SVGE GR+G P RREIGHG LA RAL+ VLP+ DFPYT+RV S
Sbjct: 374 NFK-SNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ ILSDI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEE-----DGSYAILSDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIK+ GIT +M+KAL+QAK GR HIL EM K S
Sbjct: 488 DEDHLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMAK-SIT 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ S HAP I M++ +KI +IGSGGK ++ I+E +G + +D D+G +KI + +
Sbjct: 547 GAQDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKIASPNG 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+++K+ +I ++ P G +Y +K I +G FV R+GL H+S++ + L
Sbjct: 606 EAIKKAYDMIHSIVAEPEEGMVYTGTVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
DV+K G V VKL+ +D+G++RLS + + E E
Sbjct: 665 PSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEE 702
>gi|448237425|ref|YP_007401483.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. GHH01]
gi|445206267|gb|AGE21732.1| polyribonucleotide nucleotidyltransferase [Geobacillus sp. GHH01]
Length = 723
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/756 (41%), Positives = 456/756 (60%), Gaps = 60/756 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R +++ETG + +QA+GA V G+T++ S A ++ DFFPL VNY+ER
Sbjct: 10 IDVAGRPLIIETGELAKQANGAALVRYGDTVVL-STATASREAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +LV RLIDRP+RP +GF +E Q++S V+S D P+
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILVSRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCAPEV 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAGV VG V +F++NPT ++ME S L L++AG+ DAI M
Sbjct: 129 AALIGSSVALTISDIPFEGPIAGVIVGRVDGQFVINPTVEQMEKSDLHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + V+ + + + GK KM + P P L + +
Sbjct: 189 VEAGADEVPEEVILEAIMFGHEEVKRLIAFQEEIAAQVGKEKMEVVLYEPDPALEAEIRQ 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ + +Q+ K+ R A+ ++ G ++K E E+
Sbjct: 249 LAEADIKRAVQVPEKLARDAAIEDVK---------AGVIAK-------------YEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DEE K ++ +L KLV +EV RR I R DGR
Sbjct: 287 DEE----------------KLKQVQEILH-----KLVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ L++ TLG Q +D L+ + E KRF
Sbjct: 321 KVDEIRPLSSAVGVLPRTHGSGLFTRGQTQVLSICTLGALGDVQILDGLDLE-ESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPPFSVGETGPMRGPGRREIGHGALGERALEPVVPSEREFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C LA+ DAGVPIK +AG+AMG+V + D + IL+DI G ED GDMD
Sbjct: 440 SQASICASTLAMMDAGVPIKAPVAGIAMGLVKNDDHY------TILTDIQGIEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G+T ++++AL QA+ GR IL M++ P LSK+A
Sbjct: 494 FKVAGTRKGVTALQMDIKIKGLTREILEEALMQARKGRLEILDHMMQTLSEPRKELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I IM + P+KI +IG GK++ II+ETGV+ ID E DGT+ I++ D ++ +K+K I
Sbjct: 554 PKILIMHINPDKIREVIGPSGKQINKIIDETGVK-IDIEQDGTIFISSVDEAANQKAKQI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG +Y ++K I +G FVE+ G++GL HISEL+ + K EDVV +GD
Sbjct: 613 IEDIVREVEVGQVYLG-KVKRIEKFGAFVELFNGKDGLVHISELAEGRVGKVEDVVSIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLP 849
+ VK+ E++ +G++ LSR+A+L DA N +LP
Sbjct: 672 EILVKVTEIDKQGRVNLSRKAVL--RDARNIGGELP 705
>gi|420191679|ref|ZP_14697590.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM023]
gi|394265830|gb|EJE10477.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM023]
Length = 701
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 314/747 (42%), Positives = 450/747 (60%), Gaps = 63/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVTDKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ P + + VE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF--QQEIIDHIQ-PIKQEFVPVE 237
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTI----LSENGYVSKDETVGIVETIPDLL 388
E+LV+ K+ R L+E VLT EN V K+E VG L
Sbjct: 238 R--DEDLVE------KVKRLTEDKGLKEPVLTFDKQQRDENLDVLKEEVVG------HFL 283
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
++ED + E +V +V + ++ + +RR I +
Sbjct: 284 DEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIADEKI 318
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 319 RPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE- 377
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S + E
Sbjct: 378 KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSEVLE 437
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 438 SNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMEDA 491
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 492 LGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQPREE 551
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS +AP + + + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 552 LSAYAPKVVTISINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMIN 610
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K EDV
Sbjct: 611 RAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVEDV 669
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
+K+GD ++VK+ E++ +G++ S + L
Sbjct: 670 LKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|337286994|ref|YP_004626467.1| polyribonucleotide nucleotidyltransferase [Thermodesulfatator
indicus DSM 15286]
gi|335359822|gb|AEH45503.1| polyribonucleotide nucleotidyltransferase [Thermodesulfatator
indicus DSM 15286]
Length = 708
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/749 (41%), Positives = 441/749 (58%), Gaps = 61/749 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
F R+ +ETG + +QA GA+ T G+T++ +V +A ++ DF PL+V YQE + AA
Sbjct: 8 FAGRKFSLETGKVAKQAHGAIWATYGDTVVLVTV-VASEEAKDVDFLPLSVEYQEMYYAA 66
Query: 156 GRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDAL 214
GR G +F+RE G+ + E++ RLIDRP+RP KG+ +ETQI++ VLS D PD +
Sbjct: 67 GRIPGSYFRREVGKGSEKEIITARLIDRPIRPLFPKGWCYETQIIATVLSLDPEVDPDVV 126
Query: 215 AVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMI 274
A+TAA A+ +S +P IA VRVG + +F+VNP ++ S ++L++ GS++AI+M+
Sbjct: 127 AITAASAALEVSHIPFEGPIAAVRVGRINGEFVVNPPASFLKQSDMNLVVVGSEEAIVMV 186
Query: 275 EGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEI 334
EG + + EE++ +A+ + ++ + K L E GKPK+ EL K V E+
Sbjct: 187 EGMANEVPEEIVQEAIFFAHEQIKPLLALQKELKEKAGKPKIAFEEPAVDEELKKKVREL 246
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A E L +V+ K+ R K + +KVL L E E VG
Sbjct: 247 AEEGLKEVITTAQKVARNKRRKEVFKKVLEALGE-------EAVG--------------- 284
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
E +V+ F+E + LR +++ RR DGR
Sbjct: 285 ----------------------------REAEVREYFEEFEKELLRAMLIKENRRIDGRG 316
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+ IRPI + +LPR HGS +FTRGETQ L V TLG + QRID + ++ K F L
Sbjct: 317 PEDIRPIWAEVSVLPRTHGSVIFTRGETQVLTVATLGSPEEEQRID-MPGEEVFKHFILH 375
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP VGEV + PSRREIGHG LAERAL PV+PS+++FPYTIRV S + ESNGSSS
Sbjct: 376 YNFPPFCVGEVKPLRGPSRREIGHGMLAERALTPVVPSEDEFPYTIRVVSDVLESNGSSS 435
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MA+VCG L+L DAGVPIK +AG+AMG++ + D+ +IL+DI G ED GDMDF
Sbjct: 436 MATVCGATLSLMDAGVPIKAMVAGIAMGLIKEDDQV------VILTDILGDEDRMGDMDF 489
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG E G+TA QMDIK+ GIT +M +AL QAK R IL +M + P P LS +AP
Sbjct: 490 KVAGTEKGVTALQMDIKITGITQDIMSRALAQAKKARFFILEKMREVLPEPREKLSAYAP 549
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDD-GTVKITAKDLSSLEKSKAI 753
+ + + PEK+ +IG GGK +K II G ID +D G V+I + + EK+ +
Sbjct: 550 KVLTVTINPEKVRDLIGPGGKTIKGIISACGDVKIDVDDKTGVVRIYSSSSEAAEKAAKM 609
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
+ +T VG +Y ++ +A +G FVEI PG EGL HIS+L + + D++K GD
Sbjct: 610 VKEVTQEAEVGKLYLG-KVTRVADFGAFVEIFPGTEGLVHISQLDNRRVKNVTDILKEGD 668
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V VK+I+++ G+++LSR+A L E+ E
Sbjct: 669 EVLVKVIDIDKMGRIKLSRKAALSESIKE 697
>gi|320355005|ref|YP_004196344.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
gi|320123507|gb|ADW19053.1| polyribonucleotide nucleotidyltransferase [Desulfobulbus
propionicus DSM 2032]
Length = 695
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/751 (40%), Positives = 441/751 (58%), Gaps = 61/751 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V+ G R I ETG M +QA+G+V V+ G+T + +V +A+ S+ F PL + YQE
Sbjct: 4 TVETEIGGRTIAFETGKMAKQANGSVVVSSGDTKVLVTV-VAESESKDMGFLPLTIEYQE 62
Query: 151 RFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
R AAGR G +F+RE GR + EVL CRLIDRPLRP G+ ETQ+++ V S D
Sbjct: 63 RMYAAGRIPGSYFRREIGRPSEKEVLTCRLIDRPLRPLFPDGYSCETQLIATVFSADQEF 122
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD LA+ A +A+ LS++P + +A RVG V ++++NP+ +++E SQ++L++AG+
Sbjct: 123 DPDILAMNGASMALMLSDIPFAGPVAAARVGYVDGQYVLNPSKKQLEKSQINLVVAGTRS 182
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+EG ++E+ +++A+ ++ + + L E GK K L +
Sbjct: 183 AVVMVEGKASEMAEDTVLEAIFFAHAGIQPLIDLQINLREQAGKAKREVVAPTVNQALKE 242
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
VE +A + +V+ K+ R S L+E+VL + P+L +
Sbjct: 243 KVEAVAASGMDEVVTTAEKMARAARYSKLKEEVLAQID-----------------PELYQ 285
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
E E+ + +R RIV G R
Sbjct: 286 QPSEVTEL---------------------------------LSGYKKQVMRDRIVGKGMR 312
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR + +RPIS G+LPRAHGSALFTRGETQ+L + TLG ++ Q ++ L D +
Sbjct: 313 LDGRSFEDVRPISCEVGILPRAHGSALFTRGETQALVICTLGSERDEQHLEGL-GGDVYR 371
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+FPP VGEV + PSRR+IGHGTLA R +E VLP+++ FPYT+RV S + ES
Sbjct: 372 RFMLHYNFPPFCVGEVRPLRGPSRRDIGHGTLARRGIEAVLPANDSFPYTLRVVSEVLES 431
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCGG LAL DAGVP+K ++GVAMG++ + D+ ++L+DI G ED
Sbjct: 432 NGSSSMATVCGGSLALMDAGVPVKAPVSGVAMGLIKEGDQV------VVLTDILGDEDHL 485
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKV G GIT QMDIK+ G+ +M +AL QAK GR HIL +M P +
Sbjct: 486 GDMDFKVVGTRQGITGLQMDIKIEGVDRGIMNQALAQAKKGRIHILEKMEGALSSPRTVV 545
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S+HAP +K+ P+KI IIG GGK ++ + E ID EDDGTVKI + S
Sbjct: 546 SEHAPKYVTLKIHPDKIRDIIGPGGKVIREMTTEFD-SKIDVEDDGTVKIFSNSSESANA 604
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
I +T VP VG IY E+++I +G FV+I PG +G+ HISEL+++ + K DVV
Sbjct: 605 LIKRIQQITAVPEVGAIYEG-EVRTIKEFGAFVQILPGTDGMVHISELANDRVKKVTDVV 663
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
K GD++ VK+I+++++G++RLSR+A L E +
Sbjct: 664 KEGDIIKVKVIDIDNRGRIRLSRKAALAEGE 694
>gi|404476988|ref|YP_006708419.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
B2904]
gi|434381233|ref|YP_006703016.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
WesB]
gi|404429882|emb|CCG55928.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
WesB]
gi|404438477|gb|AFR71671.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
B2904]
Length = 712
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/747 (41%), Positives = 447/747 (59%), Gaps = 59/747 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+VK F ++++ETG + +QA G+VT+ G T I +V A P+ SDFFPL VNY
Sbjct: 2 VTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYN 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ A G+ GGFFKRE + +D E+L+ R+IDRPLRP +GF +E QI+ VLS D
Sbjct: 62 EKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDM 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
DALA+ A+ A+ +S +P +A VR+G ++I+NP E+ S+LD+++AGS D
Sbjct: 122 PTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AILMIEG +SEE+ I A+++ +++ + + +CG K+ + EL K
Sbjct: 182 AILMIEGEAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELVK 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E E++ +K R +++ +N + + + ++
Sbjct: 242 MVTEYGREKIEAANYNPDKAKRNESM------------DNAF----------NEVEEYIK 279
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ EDE+++ VK + + + +R IVE G R
Sbjct: 280 TKIEDEKLISQ--------------------------VKGICHSIEEEIVREAIVEKGMR 313
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRPIS+ L+PR HGSALFTRG+TQ L+++TLG ++ AQ +D++ E K
Sbjct: 314 PDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGK-ENK 372
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGEVGR G+P RREIGHG LAER+ VLP + FPYTIRV + I ES
Sbjct: 373 TFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVAEILES 432
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA++C ++L AGVP+ S+AG+AMG+ D + +L+DI G ED
Sbjct: 433 NGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYK------VLTDIQGVEDHL 486
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG GITAFQ+DIK+ GI+ ++K+AL+QAK R IL ++ P N +
Sbjct: 487 GDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATISNP-NEI 545
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP M V PEKI ++IG GGK +K+IIEETG + ++ +D G + I A D +L+K
Sbjct: 546 SDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSD-VEIQDSGVINIFAPDTPTLDK 604
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ ++I++ P VG+IY +K I +G F+EI PG EGLCHISEL+ + E+V+
Sbjct: 605 TISLINSYVKDPEVGEIYDGV-VKDIKEFGAFIEILPGVEGLCHISELAYKHVMNVEEVL 663
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD V VK+I+V G+ LSR+ALL
Sbjct: 664 KIGDEVKVKIIDVKG-GKYSLSRKALL 689
>gi|431808006|ref|YP_007234904.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
P43/6/78]
gi|430781365|gb|AGA66649.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
P43/6/78]
Length = 712
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/747 (41%), Positives = 448/747 (59%), Gaps = 59/747 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+VK F ++++ETG + +QA G+VT+ G T I +V A P+ SDFFPL VNY
Sbjct: 2 VTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYN 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ A G+ GGFFKRE + +D E+L+ R+IDRPLRP +GF +E QI+ VLS D
Sbjct: 62 EKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDM 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
DALA+ A+ A+ +S +P +A VR+G ++I+NP +E+ S+LD+++AGS D
Sbjct: 122 PTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNRELASSELDIIVAGSKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AILMIEG +SEE+ I A+++ +++ + + +CG K+ + EL K
Sbjct: 182 AILMIEGEAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELVK 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E E++ +K R +++ +N + + + ++
Sbjct: 242 MVTEYGREKIEAANYNPDKAKRNESM------------DNAF----------NEVEEYIK 279
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ EDE+++ VK + + + +R IVE G R
Sbjct: 280 TKIEDEKLISQ--------------------------VKGICHSIEEEIVREAIVEKGMR 313
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRPIS+ L+PR HGSALFTRG+TQ L+++TLG ++ AQ +D++ E K
Sbjct: 314 PDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGK-ENK 372
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGEVGR G+P RREIGHG LAER+ VLP + FPYTIRV + I ES
Sbjct: 373 TFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVAEILES 432
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA++C ++L AGVP+ S+AG+AMG+ D + +L+DI G ED
Sbjct: 433 NGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYK------VLTDIQGVEDHL 486
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG GITAFQ+DIK+ GI+ ++K+AL+QAK R IL ++ P N +
Sbjct: 487 GDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATISNP-NEI 545
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP M V PEKI ++IG GGK +K+IIEETG + ++ +D G + I A D +L+K
Sbjct: 546 SDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSD-VEIQDSGVINIFAPDTPTLDK 604
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ ++I++ P VG++Y +K I +G F+EI PG EGLCHISEL+ + E+V+
Sbjct: 605 TISLINSYVKDPEVGEVYDGV-VKDIKEFGAFIEILPGVEGLCHISELAYKHVMNVEEVL 663
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD V VK+I+V G+ LSR+ALL
Sbjct: 664 KIGDEVKVKIIDVKG-GKYSLSRKALL 689
>gi|146278950|ref|YP_001169109.1| polynucleotide phosphorylase/polyadenylase [Rhodobacter sphaeroides
ATCC 17025]
gi|145557191|gb|ABP71804.1| Polyribonucleotide nucleotidyltransferase [Rhodobacter sphaeroides
ATCC 17025]
Length = 740
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/763 (40%), Positives = 434/763 (56%), Gaps = 73/763 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA G+V T GET + +V A DFFPL V+YQER+
Sbjct: 35 IEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYY 94
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 95 AAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDI 154
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP I RVG ++++NP +M+ + +LDL++AG+
Sbjct: 155 VAMIAASAALTISGVPFMGPIGAARVGYANGEYVLNPDVDDMQKLRENPEQRLDLVIAGT 214
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV+ G +A++ + + + E K + PP+
Sbjct: 215 KDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAK----EPFDFSPPDY 270
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V+ + ++ I+ K R A+ + + LS+ DE +G
Sbjct: 271 AALYAKVKSLGEAQMRAAFAIREKQERVNAIDAARAAIKAQLSDAELA--DENLGTA--- 325
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
FK++ S LR I+
Sbjct: 326 ----------------------------------------------FKKLESSILRGDII 339
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
GG R DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q ID L
Sbjct: 340 NGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHG 399
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 400 NSR-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 458
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L+DI G
Sbjct: 459 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGKWAVLTDILG 513
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E+GIT+ QMDIKV GIT +M++AL QAKDGR HIL EM K
Sbjct: 514 DEDHLGDMDFKVAGTENGITSLQMDIKVAGITPAIMEQALAQAKDGRMHILGEMSKAL-S 572
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+NS S +AP I + + +KI +IGSGGK ++ I+E +G + +D DDG +KI + D
Sbjct: 573 SANSFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASNDQ 631
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++++K+ +I ++ P G IY +K + +G FV R+GL H+S++++ L
Sbjct: 632 AAIKKAYDMIWSIVAEPEEGQIYTGKVVK-LVDFGAFVNFFGKRDGLVHVSQIANKRLTH 690
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
+V+K G V VKL+ +++G++RL + + E E P K
Sbjct: 691 PNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIAPEK 733
>gi|363890902|ref|ZP_09318196.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM5]
gi|361962669|gb|EHL15778.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM5]
Length = 690
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 297/744 (39%), Positives = 442/744 (59%), Gaps = 59/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + VE G + + A+G+ + +T+I + +DVP + DFFPL+V+++ER
Sbjct: 6 EMELGGRTLSVEIGKIAQMANGSCIIRYADTVILVTATNSDVPRDGIDFFPLSVDFEERL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ GGF KREGR + +L RLIDRP+RP KG+ ++ Q+++ VLS D PD
Sbjct: 66 YSAGKIPGGFVKREGRPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDKDANPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ + IA+++S +P + V +GL+ D+FI+NP ++ E S++ L+++G+ DAI+
Sbjct: 126 TIAMIGSSIALSVSSIPFNGPTGSVSIGLIDDQFIINPNLEQRERSEMYLVVSGTKDAIM 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SE++++ A+ + +++I N V+ + + GKPK + P E+ K VE
Sbjct: 186 MVEAGSNEVSEDVMLNAILFAHEEIKKICNFVQKIADEVGKPKDDYYVFKPDEEVEKAVE 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E + ++ ++ +K R+ + V +D E PD L+D D
Sbjct: 246 EYSSNKMKDAIKTVDKQERQDNMEK--------------VKQDAMEHFAEIFPDNLKDVD 291
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E V +T K +R IV+ R D
Sbjct: 292 E------------------------------------VIYNITKKEVRNMIVKDKVRPDN 315
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R + IRPI G+LPR HGSA+FTRG+TQ +++ TL Q ID L+ + E +R+
Sbjct: 316 RLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMSITTLAGLSEVQVIDGLDEETE-RRYM 374
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE P RREIGHG LA+RA+EP+LPS+ +FPY IRV S + SNGS
Sbjct: 375 HHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEFPYAIRVVSEVMSSNGS 434
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+S ASVCG L+L DAGVP+K +AG+AMG++ D ++ +ILSDI G ED GDM
Sbjct: 435 TSQASVCGSTLSLLDAGVPMKDMVAGIAMGLIKDEEDV------VILSDIQGMEDFLGDM 488
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA QMDIK+ GI ++++AL QA++GR HIL EM K P LS +
Sbjct: 489 DFKVAGTKKGITAIQMDIKISGIDEDILRRALSQAREGRFHILGEMQKVIKEPREHLSPY 548
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP+I M + P+KI +IGSGGK + II+ETGV+ ID ++DG + I + + K+K+
Sbjct: 549 APMIINMMINPDKIRDVIGSGGKIINKIIDETGVK-IDIDNDGKISILSNNEEMCLKAKS 607
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II + P VG IY+ +I I +G FVEI PG+EGL HIS++ L K ED+ K G
Sbjct: 608 IIEGIVAEPEVGAIYKG-KITKIMAFGAFVEILPGKEGLLHISQMDKKRLEKVEDMFKEG 666
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D+V+VKL E++ +G+L LSR+ LL
Sbjct: 667 DVVEVKLKEIDGQGRLNLSRKVLL 690
>gi|225848390|ref|YP_002728553.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
azorense Az-Fu1]
gi|257096710|sp|C1DTW6.1|PNP_SULAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225644547|gb|ACN99597.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 707
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/733 (40%), Positives = 443/733 (60%), Gaps = 59/733 (8%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
++ETG+ +QA+GAV V G+T + + +++ P DF PL V Y+E++ A G+ G
Sbjct: 17 FIIETGYFAKQANGAVIVRQGDTAVLVAAVMSEEPQADIDFLPLTVEYREKYYAYGKIPG 76
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
GF KREG+ D E+LV R IDRP+RP KGFY++ I ++ LS D + PD L + A
Sbjct: 77 GFVKREGKPTDREILVARNIDRPIRPLFPKGFYNDIVITAYTLSADDKYDPDVLGIVGAS 136
Query: 221 IAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDF 280
A+ +S++P IAGVRV V +FIVNPT Q+ + +++++AGS DAI+M+EG
Sbjct: 137 AALHISDIPFEGPIAGVRVCRVNGEFIVNPTYQQKAQADIEIVVAGSKDAIVMVEGGAKE 196
Query: 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELV 340
+ EE +++A+ G ++++ + L CGK K+ I L ++E + E++
Sbjct: 197 VPEEDILEAMMFGHQEIKKLIELQEELRLKCGKEKIQVAIDEEEIILKDKLKEFSYEKIK 256
Query: 341 KVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVD 400
+ +I +K R K ++++ E+ L IP+
Sbjct: 257 EAFKITDKKQRNKTINAIFEEAFKTLE----------------IPE-------------- 286
Query: 401 GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRP 460
K +K++ ++K++ S +R I+ G R DGR + IRP
Sbjct: 287 -----------EKIKKAS----------FIYKDIVSNVMRDNILNEGIRIDGRKPEEIRP 325
Query: 461 ISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520
I + G+ PR HGSA+FTRG+TQ+ +TLG Q +++E+ + +KRF L Y+FPP
Sbjct: 326 IWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSLSEGQIEESIEAGEVMKRFMLHYNFPPF 385
Query: 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCG 580
S GE A SRREIGHG LAERALEP++P + +FPY IRV S I ESNGS+SMA+VCG
Sbjct: 386 STGEAKPPRATSRREIGHGNLAERALEPLIPPEEEFPYAIRVVSDILESNGSTSMATVCG 445
Query: 581 GCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 640
G LAL DAGVP+K +AG+AMG++ D+F +ILSDI G ED GDMDFKVAG
Sbjct: 446 GSLALFDAGVPMKKHVAGIAMGLIKAEDKF------VILSDILGDEDHLGDMDFKVAGTR 499
Query: 641 DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMK 700
DG+T+ QMDIKV G+T +++KALQQA+DGR +IL M + P P +S +AP + ++
Sbjct: 500 DGVTSIQMDIKVKGLTKEILEKALQQARDGRNYILDLMYQAIPEPRKEVSPYAPTVTTLR 559
Query: 701 VKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMV 760
V P+KI +IIG GK +K IIEET V+ ID + +G VKI A + EK+ ++I+ L +
Sbjct: 560 VLPDKIPIIIGPAGKNIKKIIEETKVK-IDLDPEGLVKIYATSKEAAEKAVSMINELILD 618
Query: 761 PTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLI 820
VG++Y ++ + YG FVE+ PGR L H+S+++ L A++ +KVGD++ VK+
Sbjct: 619 VEVGEVYMG-KVTRVEDYGAFVELLPGRLSLLHVSQITGERLKSAKEKIKVGDVLKVKVS 677
Query: 821 EVNDKGQLRLSRR 833
E++D+G++++S +
Sbjct: 678 EIDDQGRIKVSLK 690
>gi|420165192|ref|ZP_14671896.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM088]
gi|420206407|ref|ZP_14711917.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM008]
gi|394236359|gb|EJD81893.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM088]
gi|394278246|gb|EJE22563.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis NIHLM008]
Length = 701
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 448/750 (59%), Gaps = 69/750 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++NP+ + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV E+ H++
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF-------------QQEIIDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTI----LSENGYVSKDETVGIVETIP 385
I +E V V + ++ + + K+L+ L++ VLT EN K+E VG
Sbjct: 228 PIK-QEFVPVERDEDLVEKVKSLTEDKGLKDTVLTFDKQQRDENLDALKEEVVG------ 280
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L++ED + E +V +V + ++ + +RR I +
Sbjct: 281 HFLDEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIAD 315
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L +
Sbjct: 316 EKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPE 375
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
E KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S
Sbjct: 376 VE-KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSE 434
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
+ ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G
Sbjct: 435 VLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGM 488
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
EDA GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 489 EDALGDMDFKVAGTKDGITAIQMDIKIDGLTRGVIEEALEQARQGRLAIMDHMLHTIEQP 548
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 549 REELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQA 607
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ ++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K
Sbjct: 608 MINRAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKV 666
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
EDV+K+GD ++VK+ E++ +G++ S + L
Sbjct: 667 EDVLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
Bu]
Length = 715
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/760 (41%), Positives = 446/760 (58%), Gaps = 69/760 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D LSE++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLSEDVMLGAVVFGHEQMQIAIDAIHDLVRDGGKPEW-DWQPAPKNEALIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDE-TVGIVETIPDLLE 389
A +L+ Q+++K R L + L E+ G V+ D+ TVG V
Sbjct: 252 AQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATVGNV-------- 303
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
LF ++ +K +R +I+ G R
Sbjct: 304 -------------------------------LF----------DIEAKIVRSQILNGEPR 322
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +
Sbjct: 323 IDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-E 381
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITES
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITES 441
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED
Sbjct: 442 NGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHL 495
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + L
Sbjct: 496 GDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAVSGANTQL 555
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + +
Sbjct: 556 SEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAE 614
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +
Sbjct: 615 AKKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYL 673
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADA----ENPP 845
K G V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 674 KEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAASQTDTPP 713
>gi|212212692|ref|YP_002303628.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
CbuG_Q212]
gi|226702642|sp|B6J0K5.1|PNP_COXB2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|212011102|gb|ACJ18483.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii
CbuG_Q212]
Length = 696
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/744 (41%), Positives = 434/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ ETG M RQA+GAV V G+T++ SV E DFFPL +NYQE+ AA
Sbjct: 10 YGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTINYQEKTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GG+FKREGR + E L RLIDRPLRP KGF +E Q+++ VLS D D A
Sbjct: 70 GKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS +P + + RVG G ++++NP+ E++DS LDL++AG+ DA+LM+E
Sbjct: 130 ILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELYKHV 331
L E +++ AV G A++ + ++ G K + PP L K V
Sbjct: 190 SEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKW----EWEPPTVNTALEKWV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E + L K QI+ K R+ + ++ +++L D E
Sbjct: 246 VEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLA----------DRAA------------E 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E EE V+ E ++ ++F E+ + +R +I+ G R D
Sbjct: 284 REGEENAVN-----------------------EHELAVIFHELERRIVREQILTGQPRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + +RPI+ + G+LPR+HGSALFTRGETQ+L V TLG ++ AQ ID+L+ D + + F
Sbjct: 321 GRDSKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQ-EEF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP VGEVG + P RREIGHG LA+RA+ PV+P+ + FPY IRV S I ESNG
Sbjct: 380 IFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDKFPYVIRVVSEILESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG LAL DAGVP K +AG+AMG++ + D++ +LSDI G ED GD
Sbjct: 440 SSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GIT +M++AL QAK+GR HIL+ M K P + +S
Sbjct: 494 MDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKVLDKPRSQVSD 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP MK+ PEKI +IG GG ++ I E T AID DDGT+KI A E +K
Sbjct: 554 LAPQYVTMKINPEKIRDVIGKGGVVIREITEATNC-AIDISDDGTIKIAAHTTEEGEAAK 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT +G +Y +K I +G FV+I P +GL HIS+++ + D ++
Sbjct: 613 RRIEELTAEVELGKVYEGTVVK-ITDFGAFVQILPNTQGLVHISQIAQERVENVRDYLEE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G ++ VK+IE++ +G++RLS + +
Sbjct: 672 GQVIRVKVIEIDRQGRVRLSMKQI 695
>gi|422019160|ref|ZP_16365710.1| polynucleotide phosphorylase/polyadenylase [Providencia
alcalifaciens Dmel2]
gi|414103702|gb|EKT65276.1| polynucleotide phosphorylase/polyadenylase [Providencia
alcalifaciens Dmel2]
Length = 706
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 320/762 (41%), Positives = 451/762 (59%), Gaps = 67/762 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG + RQA+ AV V +T ++ + E DFFPL VNY
Sbjct: 4 PIVRKFQYGQHTVTLETGMIARQATAAVMVNMDDTAVFVTAVAQKKVKEGQDFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E LV RLIDRPLRP +GF +E QI++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPGEGETLVARLIDRPLRPLFPEGFLNEIQIIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A+ALS VP + I RVG + D++++NPT E++ S+LDL++AG+D
Sbjct: 124 VNPDIVAMIGASAALALSGVPFNGPIGAARVGFINDQYVLNPTADELKSSRLDLVVAGTD 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E + LSEE ++ AV G D + + + LV+ GK K + L+
Sbjct: 184 SAVLMVESEAELLSEEQMLGAVVFGHDQQQVVIQNINELVKEAGKEKWDWQPEPVNQALH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V +A + +I K R + ++E+V+ L V++DE V + E + D+L
Sbjct: 244 DRVAALAESRMGDAYRITEKQERYAQVDLIKEEVIGAL-----VAEDENVDVSE-VSDIL 297
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
H++ + +R R++ G
Sbjct: 298 -------------------AHLE------------------------KQVVRSRVIRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQVIDQLMGE-YT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
RF Y+FPP SVGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S ITE
Sbjct: 374 DRFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSQAEFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D+F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDDF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGI+A QMDIK+ GIT +M+ AL QAK R HIL+ M + P
Sbjct: 488 LGDMDFKVAGSRDGISALQMDIKIEGITREIMQVALNQAKGARLHILSTMEQAINSPREE 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP I+ +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D L+
Sbjct: 548 ISEFAPRIYTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATD--GLK 604
Query: 749 KSKAI--ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+AI I ++T VG IY+ ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 605 AKEAIRRIEDITAEVEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA-ENPPVK 847
D +++G V VK++E++ +G++RLS + EA A E PV+
Sbjct: 664 DYLQMGQEVPVKVLEIDRQGRIRLS----MKEAVAGEEAPVQ 701
>gi|218898959|ref|YP_002447370.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus G9842]
gi|228966752|ref|ZP_04127796.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558867|ref|YP_006601591.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
gi|423561787|ref|ZP_17538063.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|226702616|sp|B7IUG5.1|PNP_BACC2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218542651|gb|ACK95045.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9842]
gi|228792851|gb|EEM40409.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401202044|gb|EJR08909.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A1]
gi|401787519|gb|AFQ13558.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
HD-771]
Length = 712
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|91789120|ref|YP_550072.1| polynucleotide phosphorylase/polyadenylase [Polaromonas sp. JS666]
gi|123355467|sp|Q127W8.1|PNP_POLSJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91698345|gb|ABE45174.1| Polyribonucleotide nucleotidyltransferase [Polaromonas sp. JS666]
Length = 707
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/754 (41%), Positives = 440/754 (58%), Gaps = 62/754 (8%)
Query: 85 SFPQPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEP-SDFF 142
S V+ +G ++ +ETG + RQASGAV V DG ++ T V D ++P DFF
Sbjct: 2 SIFNKVTKSFQWGQHKVTMETGEVARQASGAVVVDMDGTVVLATVVAKTD--AKPGQDFF 59
Query: 143 PLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWV 202
PL V+Y E+ AAGR G FFKREGR + E L RLIDRP+RP +GF++E Q++ V
Sbjct: 60 PLTVDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHV 119
Query: 203 LSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDL 262
LS + D A+ A+ A+++S +P + I RV V ++++NP +++DS++DL
Sbjct: 120 LSLNPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYVDGQYVLNPGKTQLKDSKMDL 179
Query: 263 LLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKL 322
++AG++ A+LM+E LSEE+++ AV G + N + LV GKP
Sbjct: 180 VVAGTEAAVLMVESEAQQLSEEIMLGAVVFGHEQANIAINAIHELVRDAGKPVWDWQAPA 239
Query: 323 PPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
L V E+AG +L QI++K R +A V+ L +G
Sbjct: 240 KDEPLIAKVNELAGAKLQAAYQIRSKQARTQACRVAYADVMAALKADG------------ 287
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
V DG EG MLF ++ +K +R +
Sbjct: 288 --------------VAFDGVTVEG-------------MLF----------DIEAKIVRSQ 310
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I+ G R DGR +R I R +LPR HGSALFTRGETQ+L V TLG ++ AQRID L
Sbjct: 311 ILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDAL 370
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
D E RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL VLP+ +FPYT+RV
Sbjct: 371 SGDYE-DRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTKEEFPYTMRV 429
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCGGCL+L DAGVP+K +AG+AMG++ + + F +L+DI
Sbjct: 430 VSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFA------VLTDI 483
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QAK+ R HIL +M +
Sbjct: 484 LGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEAM 543
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
+S AP +++MK+ PEKI +IG GG ++++ EETG + I+ E+DGT+ I +
Sbjct: 544 GEAKAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQ-INIEEDGTITIASN 602
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D + +++K I+ +T +G +Y I I +G V + PG++GL HIS+++ +
Sbjct: 603 DSAKADEAKRRIAEITAEVEIGKVYEGA-ITKILDFGALVNLLPGKDGLLHISQIAHERV 661
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
K D + G +V VK++E ++KG+++LS +ALL
Sbjct: 662 EKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALL 695
>gi|228940895|ref|ZP_04103454.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973824|ref|ZP_04134400.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980413|ref|ZP_04140723.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|384187864|ref|YP_005573760.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|410676180|ref|YP_006928551.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|423385310|ref|ZP_17362566.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|423528332|ref|ZP_17504777.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|452200244|ref|YP_007480325.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|228779233|gb|EEM27490.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
Bt407]
gi|228785849|gb|EEM33852.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818731|gb|EEM64797.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326941573|gb|AEA17469.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar chinensis CT-43]
gi|401635366|gb|EJS53121.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-2]
gi|402451995|gb|EJV83814.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuB1-1]
gi|409175309|gb|AFV19614.1| polyribonucleotide nucleotidyltransferase Pnp [Bacillus
thuringiensis Bt407]
gi|452105637|gb|AGG02577.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 712
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|29654180|ref|NP_819872.1| polynucleotide phosphorylase [Coxiella burnetii RSA 493]
gi|154705957|ref|YP_001424300.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii
Dugway 5J108-111]
gi|161829803|ref|YP_001596852.1| polynucleotide phosphorylase/polyadenylase [Coxiella burnetii RSA
331]
gi|81629147|sp|Q83D87.1|PNP_COXBU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610292|sp|A9KFK6.1|PNP_COXBN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187610293|sp|A9ND62.1|PNP_COXBR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|29541446|gb|AAO90386.1| hypothetical protein CBU_0852 [Coxiella burnetii RSA 493]
gi|154355243|gb|ABS76705.1| hypothetical protein CBUD_0917 [Coxiella burnetii Dugway 5J108-111]
gi|161761670|gb|ABX77312.1| polyribonucleotide nucleotidyltransferase [Coxiella burnetii RSA
331]
Length = 696
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/744 (41%), Positives = 433/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ ETG M RQA+GAV V G+T++ SV E DFFPL VNYQE+ AA
Sbjct: 10 YGKHEVTFETGEMARQATGAVVVRMGDTVLLVSVVAKKEAEEGRDFFPLTVNYQEKTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GG+FKREGR + E L RLIDRPLRP KGF +E Q+++ VLS D D A
Sbjct: 70 GKIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPKGFTNEVQVIATVLSVDSKVPTDIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS +P + + RVG G ++++NP+ E++DS LDL++AG+ DA+LM+E
Sbjct: 130 ILGASAAIGLSGIPFNGSLGAARVGYRGGEYLLNPSLDELKDSALDLVVAGTRDAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELYKHV 331
L E +++ AV G A++ + ++ G K + PP L K V
Sbjct: 190 SEAQELPESVMLGAVLHGHQAMQVAIQAIAEFIQEAGGAKW----EWEPPTVNTALEKWV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E + L K QI+ K R+ + ++ +++L D E
Sbjct: 246 VEKSEAPLKKAYQIQEKTARQAQIQAIRDQLLA----------DRAA------------E 283
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E EE V+ E ++ ++F E+ + +R +I+ G R D
Sbjct: 284 REGEENAVN-----------------------EHELAVIFHELERRIVREQILTGQPRID 320
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI+ + G+LPR+HGSALFTRGETQ+L V TLG ++ AQ ID+L+ D + + F
Sbjct: 321 GRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQ-EEF 379
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FPP VGEVG + P RREIGHG LA+RA+ PV+P+ + FPY IRV S I ESNG
Sbjct: 380 IFHYNFPPFCVGEVGFMSGPKRREIGHGRLAKRAVVPVVPTLDKFPYVIRVVSEILESNG 439
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCG LAL DAGVP K +AG+AMG++ + D++ +LSDI G ED GD
Sbjct: 440 SSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYA------VLSDILGDEDHLGD 493
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GIT +M++AL QAK+GR HIL+ M K P + +S
Sbjct: 494 MDFKVAGTSNGVTALQMDIKIEGITKEIMEQALDQAKEGRLHILSIMNKVLDKPRSQVSD 553
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
AP MK+ PEKI +IG GG ++ I E T AID DDGT+KI A E +K
Sbjct: 554 LAPQYVTMKINPEKIRDVIGKGGVVIREITEATNC-AIDISDDGTIKIAAHTTEEGEAAK 612
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT +G +Y +K I +G FV+I P +GL HIS+++ + D ++
Sbjct: 613 RRIEELTAEVELGKVYEGTVVK-ITDFGAFVQILPNTQGLVHISQIAQERVENVRDYLEE 671
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
G ++ VK+IE++ +G++RLS + +
Sbjct: 672 GQVIRVKVIEIDRQGRVRLSMKQI 695
>gi|313884899|ref|ZP_07818651.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619590|gb|EFR31027.1| polyribonucleotide nucleotidyltransferase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 698
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/744 (40%), Positives = 448/744 (60%), Gaps = 53/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K+ F R + VE G + +QASGAV V GET++ + + + DFFPL VNY+E+
Sbjct: 7 KLDFRGRPLQVEIGQVAKQASGAVLVRYGETVVLAT-AVGSKKAGTGDFFPLTVNYEEKM 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
A G+ GGF KREGR +H L RLIDRP+RP G +E QI++ VLS D + P+
Sbjct: 66 YAVGKVPGGFLKREGRPSEHATLTARLIDRPIRPMFPDGVRNEVQIVATVLSVDQDNSPE 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A +A+ +S+VP IAGV+V V + I+NP+ ++ +++DL +AG+ AI
Sbjct: 126 MAAMFGASLALGVSDVPFDGPIAGVKVARVDGQLIINPSVDQLATTEIDLTVAGTKTAIN 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + E +++A+ G +A++E+ + ++ GK K T+ P P++ V
Sbjct: 186 MVESDAAEVPEAEMLEALLFGHEAIKELVAFQEEIISAVGKEKFELTLAKPLPDIVDQVN 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E+ ++V+ +Q + K R +A++ + + + Y S E I++++ L D +
Sbjct: 246 ELFQAKMVQAIQTEEKKAREEAVADVMAAAVEYF-QTKYDSNPEFEEIIKSVNIALHDLE 304
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+DE +RR I + R DG
Sbjct: 305 KDE-------------------------------------------VRRLITKERVRPDG 321
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D IRP+SS GLLPR HGS LFTRG+TQ+L+V TL + Q ID L ++D KRF
Sbjct: 322 RKIDEIRPLSSEVGLLPRVHGSGLFTRGQTQALSVATLAPLREHQIIDGLGTED-YKRFM 380
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FPP SVGE GR+G+P RRE+GHG L ERAL+ V+PS+ +FPY IR+ S + ESNGS
Sbjct: 381 HHYNFPPYSVGETGRMGSPGRREVGHGALGERALKHVIPSEEEFPYVIRLVSEVLESNGS 440
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SS AS+CG LA+ DAG+PIK +AG+AMG+V+D D D T IL+DI G ED GDM
Sbjct: 441 SSQASICGSTLAMMDAGIPIKAPVAGIAMGLVMDDD---ADYT--ILTDIQGLEDHLGDM 495
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG GITA QMDIK+ GIT ++++AL QAK R IL ++ P LSK+
Sbjct: 496 DFKVAGTAKGITALQMDIKIQGITEQILREALAQAKVARMQILDQITSTIAAPRPELSKY 555
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I ++K+ ++I ++IG GG+ + II+ETGV+ ID +D+G V I ++D + + K+K
Sbjct: 556 APKIEMVKIDIDQIKVVIGKGGETINKIIDETGVK-IDIDDEGNVSIYSEDQAMINKAKD 614
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II +LT V G++Y ++ I +G FVEI PG++GL HIS+++ + K EDV+ +G
Sbjct: 615 IIESLTHVVAAGEVY-TGKVVRIEKFGAFVEILPGKQGLLHISQIAKERIDKVEDVLAMG 673
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D V VK+ E++D+G++ LSR+ L+
Sbjct: 674 DDVTVKVTEIDDRGRINLSRKVLI 697
>gi|30248196|ref|NP_840266.1| polynucleotide phosphorylase/polyadenylase [Nitrosomonas europaea
ATCC 19718]
gi|81584849|sp|Q82XT0.1|PNP_NITEU RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30180081|emb|CAD84083.1| pnp; polyribonucleotide nucleotidyltransferase protein
[Nitrosomonas europaea ATCC 19718]
Length = 708
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/764 (40%), Positives = 451/764 (59%), Gaps = 69/764 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEP-SDFFPLNV 146
+P+ I +G + +ETG + +QA GAV V+ +T++ + + D ++P DFFPL V
Sbjct: 2 KPIKKSITYGRHTLTIETGEIAKQAHGAVIVSMDDTVVLVT-AVGDKKTKPGQDFFPLTV 60
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
+YQE+F +AGR G FFKREGR + E L RLIDRP+RP GFY+E Q+++ VLS D
Sbjct: 61 DYQEKFYSAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPDGFYNEVQVVAMVLSSD 120
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
D A+ A+ LS +P + RVG + +++I+NPTT ++++SQL+L++AG
Sbjct: 121 TEIDADIPAMIGTSAALILSGIPFDGPVGAARVGYINNEYILNPTTTQLKESQLNLVVAG 180
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+ A+LM+E D LSE++++ AV G D ++++ + + L + G + P E
Sbjct: 181 TQKAVLMVESEADELSEDVMLGAVTYGHDQMQQVIDMINELADEAG----VTAWDWQPAE 236
Query: 327 ----LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
L + V ++A +L ++K K R +A++ + ++V T L VG
Sbjct: 237 QDLSLVEKVTQLAEADLRNAFRLKQKSARVEAINEIWQRVFTELK----------VG--- 283
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
+EG SE V+ + + ++ +R
Sbjct: 284 --------------------TEEGP---------------SEQAVREIGFALEARIVRNS 308
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I++G R DGR +RPI+ R G+LPR HGSALFTRGETQ+LA+ TLG + Q+ID L
Sbjct: 309 ILDGESRIDGRGTRTVRPITIRHGVLPRTHGSALFTRGETQALAITTLGTARDEQKIDAL 368
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ D +RF L Y+ PP + GE GR+G P RREIGHG LA+RAL V+P +F Y++RV
Sbjct: 369 QGDYS-ERFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVIPPVEEFGYSMRV 427
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S +TESNGSSSMASVCGGCL+L DAGVP+K +AG+AMG++ + + F +L+DI
Sbjct: 428 VSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKEGNRFA------VLTDI 481
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG E GITA QMDIK+ GIT +M+ AL QAK+GR HIL M +
Sbjct: 482 LGDEDHLGDMDFKVAGTEHGITALQMDIKIQGITKEIMQVALLQAKEGRLHILEIMKQSL 541
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P S+S HAP I K+ PEKI +IG GG ++++ EETG ID DDG+V I
Sbjct: 542 PIARESISVHAPRIIKFKINPEKIRDVIGKGGAVIRALTEETGT-TIDISDDGSVTIACV 600
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
E+++ I ++T VG IY +K + +G V + PG++GL HIS++++ +
Sbjct: 601 SSEGGEQARKRIEDITADVEVGRIYEGTVLK-LLDFGAIVSVLPGKDGLLHISQIANERV 659
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRA--LLPEADAENP 844
D +K G V VK++E ++KG+LRLS +A + E A+NP
Sbjct: 660 ENVADHLKEGQTVRVKVLEADEKGRLRLSMKAASISTEITADNP 703
>gi|229086359|ref|ZP_04218536.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
gi|228696971|gb|EEL49779.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-44]
Length = 717
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ETG + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S+VP IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDVPFEGPIAGATVGRIDGEFVINPTVEQQEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V +
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDADLEQAVRK 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R +A++ ++++V+ E++
Sbjct: 249 MAEKDMHAAIQVHEKHAREEAINEVKQRVIA------------------------HYEEQ 284
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+ E V G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 285 EVEAEVLGQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+D +RP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KSDEVRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTANGVTALQMDIKIDGLSREILEEALQQAKIGRMHILDHMLTAIAEPRKELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ D EK+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSVDQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K I +G FV + G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRIEKFGAFVGLFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|384921829|ref|ZP_10021790.1| polynucleotide phosphorylase/polyadenylase [Citreicella sp. 357]
gi|384464244|gb|EIE48828.1| polynucleotide phosphorylase/polyadenylase [Citreicella sp. 357]
Length = 714
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/766 (40%), Positives = 442/766 (57%), Gaps = 69/766 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A P DFFPL V+YQE++
Sbjct: 9 MQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF HE ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S VP IAG RVG +I+NPT +M+ + +LDL++AG+
Sbjct: 129 VAMIAASAALTISGVPFMGPIAGCRVGFEDGDYILNPTVDDMQGLRNNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP-PE 326
DA++M+E L+EE ++ AV + ++ + + + +L E K + P E
Sbjct: 189 KDAVMMVESEAYELTEEEMLGAVVFAHEQIQPVIDLIISLAEDAAKEPF--NFQAPDYSE 246
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L+ V+ I +++ I +K R A+S+ ++++ T LSE
Sbjct: 247 LFGVVKGIGEDKMRAAYAITDKQARVAAVSAAKDEIKTQLSEEQ---------------- 290
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
++ ++ K++ S LR +V
Sbjct: 291 -----------------------------------LADANLGSALKKLESTVLRADVVRN 315
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
RR DGR D +RPI S +LPR HGS+LFTRGETQ+L V TLG Q ID L +
Sbjct: 316 KRRIDGRALDQVRPIVSETKVLPRTHGSSLFTRGETQALVVTTLGTGDDEQFIDALHGNF 375
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIR+ S I
Sbjct: 376 K-SNFMLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRIVSEI 434
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCGG L++ DAGVP+K +AGVAMG+VL+ DG +L+DI G E
Sbjct: 435 TESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVLED-----DGEYAVLTDILGDE 489
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E+GIT+ QMDIKV GIT +MK+AL QAK GR HIL+EM K +
Sbjct: 490 DHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKQALSQAKAGRLHILSEMSKAM-TEA 548
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI + + +
Sbjct: 549 GEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEMSGAK-VDINDDGVIKIASANGEA 607
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
++K+ +I ++ P +Y+ +K I +G FV R+GL H+S++ + L
Sbjct: 608 IQKAYDMIYSIVAEPEENKVYKGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNHPS 666
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
DV+K G V VKL+ +D+G++RL+ + + E E P T D
Sbjct: 667 DVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETGEEIAPEARKTED 712
>gi|242373566|ref|ZP_04819140.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis M23864:W1]
gi|242348929|gb|EES40531.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
epidermidis M23864:W1]
Length = 699
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/751 (40%), Positives = 450/751 (59%), Gaps = 65/751 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V +++NP+ E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVSEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV E+ H++
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF-------------QQEIIDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + V + + + + KAL+ L++ VLT + +DE + + E +
Sbjct: 228 PVK-QEFIPVERDEALVEKVKALTEEKGLKDTVLTFDKQQ----RDENLDALKEEVVEHF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED D E +++ +V + ++ + +RR I +
Sbjct: 283 IDEEDPDNESLIN-------------------------EVYSILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPR HGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRVHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTTDFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIDAPRK 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 551 ELSAYAPKVVTMHIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQEMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++K II +T VG +Y + ++K I YG FVE+ PG++ L HIS++S + + K ED
Sbjct: 610 DRAKEIIEEITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISKDRINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
V+ +GD ++VK+ E++ +G++ S +AL E
Sbjct: 669 VLNIGDTIEVKITEIDKQGRVNASHKALTQE 699
>gi|407706267|ref|YP_006829852.1| cell division protein FtsL [Bacillus thuringiensis MC28]
gi|407383952|gb|AFU14453.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
MC28]
Length = 712
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + +V+ GK K+ + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|300871237|ref|YP_003786110.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
95/1000]
gi|300688938|gb|ADK31609.1| polynucleotide phosphorylase/polyadenylase [Brachyspira pilosicoli
95/1000]
Length = 712
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/747 (41%), Positives = 447/747 (59%), Gaps = 59/747 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+VK F ++++ETG + +QA G+VT+ G T I +V A P+ SDFFPL VNY
Sbjct: 2 VTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYN 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ A G+ GGFFKRE + +D E+L+ R+IDRPLRP +GF +E QI+ VLS D
Sbjct: 62 EKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDM 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
DALA+ A+ A+ +S +P +A VR+G ++I+NP E+ S+LD+++AGS D
Sbjct: 122 PTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELASSELDIIVAGSKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AILMIEG +SEE+ I A+++ +++ + + +CG K+ + EL K
Sbjct: 182 AILMIEGEAREVSEEVFIGAIELAHKEMQKYIDMQNEMAALCGTQKIEQELFEYDAELVK 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E E++ +K R +++ +N + + + ++
Sbjct: 242 MVTEYGREKIEAANYNPDKAKRNESM------------DNAF----------NEVEEYIK 279
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ EDE+++ VK + + + +R IVE G R
Sbjct: 280 TKIEDEKLISQ--------------------------VKGICHSIEEEIVREAIVEKGMR 313
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRPIS+ L+PR HGSALFTRG+TQ L+++TLG ++ AQ +D++ E K
Sbjct: 314 PDGRALDEIRPISTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGK-ENK 372
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
F L Y+FPP SVGEVGR G+P RREIGHG LAER+ VLP + FPYTIRV + I ES
Sbjct: 373 TFMLHYNFPPFSVGEVGRYGSPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVAEILES 432
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA++C ++L AGVP+ S+AG+AMG+ D + +L+DI G ED
Sbjct: 433 NGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYK------VLTDIQGVEDHL 486
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG GITAFQ+DIK+ GI+ ++K+AL+QAK R IL ++ P N +
Sbjct: 487 GDMDFKVAGTRKGITAFQLDIKLTGISTQILKEALEQAKKARYFILDKIEATISNP-NEI 545
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP M V PEKI ++IG GGK +K+IIEETG + ++ +D G + I A D +L+K
Sbjct: 546 SDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSD-VEIQDSGVINIFAPDTPTLDK 604
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ ++I++ P VG++Y +K I +G F+EI PG EGLCHISEL+ + E+V+
Sbjct: 605 TISLINSYVKDPEVGEVYDGV-VKDIKEFGAFIEILPGVEGLCHISELAYKHVMNVEEVL 663
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD V VK+I+V G+ LSR+ALL
Sbjct: 664 KIGDEVKVKIIDVKG-GKYSLSRKALL 689
>gi|289665195|ref|ZP_06486776.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. vasculorum NCPPB 702]
gi|289667359|ref|ZP_06488434.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas campestris
pv. musacearum NCPPB 4381]
Length = 704
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 308/742 (41%), Positives = 450/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + IA +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + + + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPS--DWVAPAKNDGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL +L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGVLAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLSKEFGELEYQTMRGSVLSTKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|423359157|ref|ZP_17336660.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD022]
gi|401085029|gb|EJP93275.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD022]
Length = 712
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEIGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|391233309|ref|ZP_10269515.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
gi|391222970|gb|EIQ01391.1| polyribonucleotide nucleotidyltransferase [Opitutaceae bacterium
TAV1]
Length = 755
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/744 (40%), Positives = 434/744 (58%), Gaps = 54/744 (7%)
Query: 101 ILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSG 160
I TG M + A+GAVTVT GET ++ S A DFFPL V+Y+E++SAAGR G
Sbjct: 14 IKFTTGDMAKFANGAVTVTVGETNVFVSATAAQTMRPGQDFFPLTVDYREKYSAAGRFPG 73
Query: 161 GFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAG 220
G+FKREG+ + E+L RL DRP RP +GF +E QI+ +LS D +H D V A
Sbjct: 74 GYFKREGKPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGLLLSADQIHEADIAMVNGAS 133
Query: 221 IAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDF 280
A+A+S++P + I VRV L+ +F+ NPT ++M S LDL+ G++ +LMIEG D
Sbjct: 134 AALAISDIPWNGPIGAVRVALIDSQFVANPTIEQMFSSTLDLIYVGNEKDMLMIEGSADQ 193
Query: 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELV 340
L EE I+A++ A++ I ++ L GKPK + + + PE +E + ++ V
Sbjct: 194 LPEERFIEALEFAHQAIQPIIATIRDLAARAGKPKAVFPLVVAKPEARAIIERVVPQQRV 253
Query: 341 KVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVD 400
+A+ E++V + + ++ E+ +
Sbjct: 254 S-----------EAIFGFEKQV-----------RGANINALK----------EEARAALL 281
Query: 401 GEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRP 460
E+ EG+ F++ D+ +VF+++ K R ++E G R+D R A +RP
Sbjct: 282 AELGEGN--------------FADHDISIVFEDLQYKAYRATVLERGVRADKRDAKSLRP 327
Query: 461 ISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520
I+S G+LPR HGSALF RG+TQ L TLG + AQ +D L K F L Y+FPP
Sbjct: 328 IASEVGVLPRVHGSALFQRGDTQGLVTATLGPTKEAQDMDGLTGGATSKSFILHYNFPPY 387
Query: 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCG 580
SVGE GR P RREIGHG LAER+L PVLP ++ FPYTIR+ S I SNGS+SMAS+CG
Sbjct: 388 SVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYTIRLVSDIMASNGSTSMASICG 447
Query: 581 GCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNE 640
GCLAL DAGVPI +AG++ G++ G + ++DI G ED GDMDFK+AG
Sbjct: 448 GCLALMDAGVPIIAPVAGISCGLMTSNKPDGSIDNWVTITDILGEEDHFGDMDFKLAGTT 507
Query: 641 DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMK 700
GIT FQ+D+K+ G+ + + + A+ QA+D R IL ML P P +LS +AP I ++
Sbjct: 508 KGITGFQLDLKINGLPIEIARTAIFQARDARIEILKLMLSAIPAPRKTLSAYAPRIQTIQ 567
Query: 701 VKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDD--GTVKITAKDLSSLEKSKAIISNLT 758
+ PEKI L+IG GGK ++ I+E TG + ID DD G V I + + S+ ++ + I L
Sbjct: 568 INPEKIGLLIGPGGKTIRRIVETTGAQ-IDISDDDSGKVFIYSNNADSMNRAISEIDALC 626
Query: 759 MVPT---VGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+ VG IY + + +G FVE PG+EGLCHISEL+ + + EDVVKVGD +
Sbjct: 627 GGGSQIEVGKIYTG-RVSGVKEFGAFVECLPGKEGLCHISELADFRVRRTEDVVKVGDSI 685
Query: 816 DVKLIEVNDK-GQLRLSRRALLPE 838
VK I ++++ ++RLSRRA + E
Sbjct: 686 TVKCIGIDERTNKVRLSRRAAMKE 709
>gi|363892679|ref|ZP_09319840.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM2]
gi|361963265|gb|EHL16346.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
CM2]
Length = 690
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/744 (39%), Positives = 442/744 (59%), Gaps = 59/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + VE G + + A+G+ + +T+I + +DVP + DFFPL+V+++ER
Sbjct: 6 EMELGGRTLSVEIGKIAQMANGSCIIRYADTVILVTATNSDVPRDGIDFFPLSVDFEERL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ GGF KREGR + +L RLIDRP+RP KG+ ++ Q+++ VLS D PD
Sbjct: 66 YSAGKIPGGFVKREGRPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDKDANPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ + IA+++S +P + V +GL+ D+FI+NP ++ E S++ L+++G+ DAI+
Sbjct: 126 TIAMIGSSIALSVSSIPFNGPTGSVSIGLIDDQFIINPNLEQREKSEMYLVVSGTKDAIM 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SE++++ A+ + +++I + V+ + + GKPK + P E+ K VE
Sbjct: 186 MVEAGSNEVSEDVMLNAILFAHEEIKKICDFVQKIADEVGKPKDDYYVFKPDEEVEKAVE 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E + ++ ++ +K R+ + V +D E PD L+D D
Sbjct: 246 EYSSNKMKDAIKTVDKQERQDNMEK--------------VKQDAMEHFAEIFPDNLKDVD 291
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E V +T K +R IV+ R D
Sbjct: 292 E------------------------------------VIYNITKKEVRNMIVKDKVRPDN 315
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R + IRPI G+LPR HGSA+FTRG+TQ +++ TL Q ID L+ + E +R+
Sbjct: 316 RLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMSITTLAGLSEVQVIDGLDEETE-RRYM 374
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE P RREIGHG LA+RA+EP+LPS+ +FPY IRV S + SNGS
Sbjct: 375 HHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEFPYAIRVVSEVMSSNGS 434
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+S ASVCG L+L DAGVP+K +AG+AMG++ D ++ +ILSDI G ED GDM
Sbjct: 435 TSQASVCGSTLSLLDAGVPMKDMVAGIAMGLIKDEEDV------VILSDIQGMEDFLGDM 488
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA QMDIK+ GI ++++AL QA++GR HIL EM K P LS +
Sbjct: 489 DFKVAGTKKGITAIQMDIKISGIDEDILRRALSQAREGRFHILGEMQKVIKEPREHLSPY 548
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP+I M + P+KI +IGSGGK + II+ETGV+ ID ++DG + I + + K+K+
Sbjct: 549 APMIINMMINPDKIRDVIGSGGKIINKIIDETGVK-IDIDNDGKISILSNNEEMCLKAKS 607
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II + P VG IY+ +I I +G FVEI PG+EGL HIS++ L K ED+ K G
Sbjct: 608 IIEGIVAEPEVGTIYKG-KITKIMAFGAFVEILPGKEGLLHISQMDKKRLEKVEDMFKEG 666
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D+V+VKL E++ +G+L LSR+ LL
Sbjct: 667 DVVEVKLTEIDTQGRLNLSRKVLL 690
>gi|260771169|ref|ZP_05880096.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
gi|260613766|gb|EEX38958.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii CIP
102972]
Length = 711
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/752 (40%), Positives = 436/752 (57%), Gaps = 66/752 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+ S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E + LSEE ++ AV G D + + +KA+ E + + P
Sbjct: 182 GTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTV---IKAINEFAAEVATPAWDWVAPE 238
Query: 326 E---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKV-LTILSENGYVSKDETVGIV 381
E L + E+A +LV+ QI K+ R + + +V T+L+EN
Sbjct: 239 ENTALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAEN------------ 286
Query: 382 ETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRR 441
EE + PK ++ +F ++ +RR
Sbjct: 287 -------------EE-------------LNPK------------EIHTIFHDLEKTVVRR 308
Query: 442 RIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDN 501
I+ G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID
Sbjct: 309 SIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDE 368
Query: 502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIR 561
L + + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+R
Sbjct: 369 LTGERK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDEFPYTVR 427
Query: 562 VESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSD 621
V S ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSD
Sbjct: 428 VVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDF------VVLSD 481
Query: 622 ITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKC 681
I G ED GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 482 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 682 SPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITA 741
+ +S+ AP IH MK+ +KI +IG GG ++ + EETG I+ EDDGT+KI A
Sbjct: 542 ISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAA 600
Query: 742 KDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNW 801
+ + I +T VG IY ++ +A +G FV + PG++GL HIS+++
Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIY-TGKVARLADFGAFVTVLPGKDGLVHISQIADKR 659
Query: 802 LAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
+ K DV+ G V VK++E++ +G++RLS +
Sbjct: 660 IEKVSDVLSEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|197287234|ref|YP_002153106.1| polynucleotide phosphorylase/polyadenylase [Proteus mirabilis
HI4320]
gi|227357072|ref|ZP_03841442.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|425070182|ref|ZP_18473296.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW6]
gi|226702677|sp|B4F2C3.1|PNP_PROMH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|194684721|emb|CAR46710.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis
HI4320]
gi|227162764|gb|EEI47727.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis ATCC
29906]
gi|404595698|gb|EKA96234.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW6]
Length = 709
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/747 (41%), Positives = 437/747 (58%), Gaps = 60/747 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P K +G + +ETG M RQA+ AV V T ++ +V E DFFPL VN
Sbjct: 3 NPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRPLRP +GF +E Q+++ V+S +
Sbjct: 63 YQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I G RVG + ++++NPT E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
A+LM+E D LSEE ++ AV G + + + + ALV GK K D P +
Sbjct: 183 AGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKW-DWAPEPINQS 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L+ + ++A + +I K R + + ++ ++V++ L
Sbjct: 242 LHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTL-------------------- 281
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
L EDE DE GE+ E +F + K +R R++ G
Sbjct: 282 LAEDESLDE-----GEIIE------------------------IFSGLEKKIVRARVLAG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R GLLPR HGSALFTRGETQ+L TLG + AQ ID++ +
Sbjct: 313 EPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGE- 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ +FPYT+RV S I
Sbjct: 372 HTDTFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + + F ++LSDI G E
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENF------VVLSDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+ +G++A QMDIK+ GIT +M+ AL QAK R HIL M P
Sbjct: 486 DHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMESAISQPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI A
Sbjct: 546 AEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATSGEQ 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++ A I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 605 AKQAIARIEEITAEVEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVS 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D + +G V VK++E++ +G++RLS +
Sbjct: 664 DYLTMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|126730394|ref|ZP_01746205.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
gi|126709127|gb|EBA08182.1| Polyribonucleotide nucleotidyltransferase [Sagittula stellata E-37]
Length = 713
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/750 (41%), Positives = 441/750 (58%), Gaps = 75/750 (10%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ +G+ + +ETG + RQA G V T GET + +V A E DFFPL V+YQE++
Sbjct: 9 LQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKTQKEGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLLLAGS 267
+A+ AA A+ +S P IAG RVG +++NPT +M D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGAPFMGPIAGARVGYEDGSYVLNPTVDDMHLLRDNPDQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP-- 325
DA++M+E L+E+ ++ AV + ++ + + + L E K + + PP
Sbjct: 189 KDAVMMVESEAYELTEDEMLGAVMFAHEQIQPVIDLIIDLAEDAAK----EPFEFTPPDY 244
Query: 326 -ELYKHVEEIAGEELVKV-LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
EL+ V+ AGEE +KV I +K R A++++++++ LSE
Sbjct: 245 SELFGVVKA-AGEEKMKVAYAISDKQERVAAVAAVKDEIKAGLSEE-------------- 289
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
++ ++ K++ S+ LR +
Sbjct: 290 -------------------------------------QLADANLGSALKKLESQVLRSDV 312
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
V RR DGR D +R I S G+LPR HGSALFTRGETQ+L V TLG Q ID L+
Sbjct: 313 VVNKRRIDGRALDQVRSIVSETGILPRTHGSALFTRGETQALVVTTLGTGDDEQMIDALQ 372
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
+ F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIR+
Sbjct: 373 GTYK-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRLV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCGG L++ DAGVP+K ++AGVAMG+VL+ DG+ IL+DI
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLVLEE-----DGSYGILTDIL 486
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG E+GIT+ QMDIKV GIT +MK AL QAK+GR HIL EM K
Sbjct: 487 GDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMKTALSQAKEGRMHILGEMSKAI- 545
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+ S S+HAP I M + +KI +IGSGGK ++ I+E +G + +D DDG +KI + +
Sbjct: 546 SEAGSFSEHAPRIETMNIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIASPN 604
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+++K+ +I + P G +Y+ +K I +G FV R+GL H+S++ + L
Sbjct: 605 GEAIQKAYDMIYAIVAEPEEGHVYKGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLN 663
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
DV+K G V VKL+ +D+G++RL+ +
Sbjct: 664 HPSDVLKEGQEVYVKLLGFDDRGKVRLAMK 693
>gi|433468915|ref|ZP_20426344.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
gi|432205308|gb|ELK61338.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
Length = 706
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/744 (41%), Positives = 436/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+AGE + + +I+ K R + DE V+
Sbjct: 249 VAGETIKEAFKIRQKQERSAKV-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETD----------------TLAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ ++SI ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRSITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D +KVG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLKVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|407799818|ref|ZP_11146696.1| polyribonucleotide nucleotidyltransferase [Oceaniovalibus
guishaninsula JLT2003]
gi|407058295|gb|EKE44253.1| polyribonucleotide nucleotidyltransferase [Oceaniovalibus
guishaninsula JLT2003]
Length = 710
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 436/758 (57%), Gaps = 73/758 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G+ + +ETG + RQA G+V T GET + +V A DFFPL V+Y E++
Sbjct: 9 IQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKTQKPGQDFFPLTVHYNEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTSRLIDRPIRPLFVPGFKNEVLVICTVLSHDLVNDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ LS P IAG RVG G ++++NP ++M + +LDL++AG+
Sbjct: 129 VAMIAASAALTLSGAPFMGPIAGCRVGYEGGEYVLNPDLEDMHNLKTKPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
DA++M+E LSE ++ AV ++ + + + L E K + P +
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVNFAHQQIQPVIDLIIDLAEEAAK----EPFDFEPADY 244
Query: 327 --LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
LY V++ +++ I +K R A+S
Sbjct: 245 SALYDAVKQAGEQKMRAAFAITDKQERTTAIS---------------------------- 276
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
+ + ++DG DE +K+ L S K++ S LR +V
Sbjct: 277 --------DARQAIIDGLTDE---------QKADENLGS------ALKKLESSVLRGDVV 313
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
+ G+R DGR D +RPI + GLLPR HGSALFTRGETQ+LAV TLG Q ID L+
Sbjct: 314 KSGKRIDGRRTDEVRPIVAETGLLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDALQG 373
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ F L Y+FPP SVGEVGR G P RREIGHG LA RAL+ VLP+ DFPYTIRV S
Sbjct: 374 TYK-SNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVS 432
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG IL+DI G
Sbjct: 433 EITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGEYAILTDILG 487
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG E GIT+ QMDIKV GIT +M+KAL QAK GR HIL EM K +
Sbjct: 488 DEDHLGDMDFKVAGTEKGITSLQMDIKVAGITSEIMEKALDQAKAGRLHILGEMNK-ALS 546
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ S S+HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI +
Sbjct: 547 EAGSFSQHAPKIETMQIPTDKIREVIGSGGKVIREIVETSGAK-VDINDDGVIKIASSSA 605
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+++++ +I ++ P G +Y+ +K I +G FV R+GL H+S++ L
Sbjct: 606 DAIQRAHDMIHSIVAEPEAGKVYKGTVVK-IVDFGAFVNFFGKRDGLVHVSQIDEKRLNH 664
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D +K G V VKL+ +D+G++RL+ + + E E
Sbjct: 665 PSDALKEGQEVWVKLLGFDDRGKVRLAMKMVDQETGQE 702
>gi|260913802|ref|ZP_05920277.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
ATCC 43325]
gi|260632115|gb|EEX50291.1| polyribonucleotide nucleotidyltransferase [Pasteurella dagmatis
ATCC 43325]
Length = 666
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/704 (42%), Positives = 420/704 (59%), Gaps = 55/704 (7%)
Query: 137 EPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHET 196
E DFFPL VNYQER AAGR GGFFKREGR + E L+ RLIDRP+RP +GFY+E
Sbjct: 3 EGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEI 62
Query: 197 QILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME 256
QI++ V+S + PD +A+ A A++LS VP + I RVG + ++F++NPT E +
Sbjct: 63 QIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTMNEQK 122
Query: 257 DSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM 316
S+LDL++AG+D A+LM+E D L+EE ++ AV G + + + +K GKP+
Sbjct: 123 QSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHEQQQVVIEAIKEFTAQAGKPRW 182
Query: 317 LDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDE 376
P L + V+ IA L + +I K R + + +++ V
Sbjct: 183 DWVAPEPNTALIEKVKAIAESRLGEAYRITEKQSRYEQIDAIKADV-------------- 228
Query: 377 TVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTS 436
I + ++ E E+ E ++D +F + S
Sbjct: 229 ---IAQITAEVAEGEEVSEGKIID-----------------------------IFTALES 256
Query: 437 KFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMA 496
+ +R RI+ G R DGR D +R + G+LPR HGSA+FTRGETQ+LAV TLG ++ A
Sbjct: 257 QIVRGRILNGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDA 316
Query: 497 QRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDF 556
Q ID L + + F Y+FPP SVGE G IG+P RREIGHG LA+R + V+P+ +F
Sbjct: 317 QIIDEL-TGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEF 375
Query: 557 PYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTP 616
PY +RV S ITESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F
Sbjct: 376 PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKF------ 429
Query: 617 LILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILA 676
++LSDI G ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL
Sbjct: 430 VVLSDILGDEDHLGDMDFKVAGTRQGVTALQMDIKIEGITAEIMQIALNQAKSARLHILG 489
Query: 677 EMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGT 736
M + P P +S AP I+ MK+ P+KI +IG GG ++++ EETG +ID +DDGT
Sbjct: 490 VMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGT-SIDIDDDGT 548
Query: 737 VKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISE 796
VKI A D +S + A I ++T G +Y+ ++ +A +G FV I +EGL HIS+
Sbjct: 549 VKIAAVDANSAKDVMARIEDITAEVEAGAVYKG-KVTRLADFGAFVSIVGNKEGLVHISQ 607
Query: 797 LSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
++ + K D + VG V VK++E++ +G++RL+ + + P+ +
Sbjct: 608 IAEERVEKVSDYLAVGQEVSVKVVEIDRQGRIRLTMKEIAPKQE 651
>gi|385324486|ref|YP_005878925.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
Length = 706
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/744 (41%), Positives = 436/744 (58%), Gaps = 62/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA+ AV V+ G+T++ +V E DFFPL V+Y ER AA
Sbjct: 11 YGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAVTTNKEVKEGQDFFPLTVDYLERTYAA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREG+ + E+L RLIDRP+RP +GFYH+ QI++ V+S D D A
Sbjct: 71 GKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDIQIVAMVVSVDPEIDSDIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+ LS VP + I RVG + +++NPT E+ SQLDL++AG+ A+LM+E
Sbjct: 131 MLGASAALVLSGVPFAGPIGAARVGYINGVYVLNPTKAELAKSQLDLVVAGTSKAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP--ELYKHVEE 333
L E++++ AV G D ++ N + + P++ D K P EL V
Sbjct: 191 SEAKILPEDVMLGAVVYGHDQMQVAINAINEFADEV-NPEVWDW-KAPETNEELVAKVRG 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
IAGE + + +I+ K R L DE V+
Sbjct: 249 IAGETIKEAFKIRQKQARSAKL-------------------DEAWNAVK----------- 278
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E ++ E D + ++K +FK + + +R +I++G R DGR
Sbjct: 279 --EALITEETDT----------------LAANEIKGIFKHLEADVVRSQILDGQPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP++ + +LPR HGSALFTRGETQ+LAV TLG + Q ID L S + RF L
Sbjct: 321 DTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDAL-SGEYTDRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP S GEVGR+GAP RREIGHG LA+RAL VLP DF YT+RV S ITESNGSS
Sbjct: 380 HYNFPPYSTGEVGRVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCL+L AGVP+K +AG+AMG++L+ ++F +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G+TA QMDIK+ GIT +M+ AL QAK+ R HIL +M P LS HA
Sbjct: 494 FKVAGTTEGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGP-QELSAHA 552
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + MK+ +KI +IG GG+ +++I ETG E I+ +DGT+ I A + + +K
Sbjct: 553 PRLFTMKINQDKIREVIGKGGETIRAITAETGTE-INIAEDGTITIAATTQEAGDAAKKR 611
Query: 754 ISNLTMVPTVGDIYRNCEIKSI-APYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I +T VG +Y +K + G V + PG++GL HIS+++ + D ++VG
Sbjct: 612 IEQITAEVEVGKVYEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVG 671
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
+V+VK +EV+D+G++RLS +ALL
Sbjct: 672 QVVNVKALEVDDRGRVRLSIKALL 695
>gi|433654999|ref|YP_007298707.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293188|gb|AGB19010.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 700
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 443/748 (59%), Gaps = 59/748 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ ++++V+TG + + A+G+ V G+T++ + C + P E DFFPL+V+Y+E
Sbjct: 4 NFELELAGKKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D
Sbjct: 64 RLYSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQ 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V V LV KFI+NP E S L L ++G+ DA
Sbjct: 124 PEIVAMIGSSVALSISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDA 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + + EE+++ A+ + +++I + ++ +V+ G PK TI L +
Sbjct: 184 IMMVEAGANEVPEEVMLDAIMYAHEYIKKIVDFIEGIVKEVGLPKAEVTIHEIDSNLERL 243
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V E A E++ L+ + K R + +EE+VL KDE PD L D
Sbjct: 244 VREFATEKIYNALRTEEKKERNDNIDKVEEEVLEHF-------KDEY-------PDNLAD 289
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V +T + +R+ I E R
Sbjct: 290 IDE------------------------------------VLYTITKEQMRKMITEEKIRV 313
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI+ G+LPR HGSA+FTRG+TQ + V TLG Q +D L D+E KR
Sbjct: 314 DGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILDGL-GDEESKR 372
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGE + P RREIGHG LAERALEP++PS+ +FPYTIR+ S + SN
Sbjct: 373 YMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIRLVSEVLSSN 432
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + + T IL+DI G ED G
Sbjct: 433 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGE------TVSILTDIQGIEDFLG 486
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++ AL++A+ GR IL +ML+ P LS
Sbjct: 487 DMDFKVAGTEKGITAIQMDIKIAGIDRDILSAALEKARKGRLFILNKMLETIKEPRKELS 546
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I + V PEKI IIG+GGK + II +TGV+ ID EDDG V I++ DL + EK+
Sbjct: 547 PYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVK-IDIEDDGRVFISSTDLKAGEKA 605
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K II +T VG IY ++ IA +G FVEIAPG+EGL HIS+L + K EDVV
Sbjct: 606 KMIIEAITKDVEVGAIYLG-KVTRIASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVVN 664
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+GD + VK+ E++ +G++ LSR+ LP+
Sbjct: 665 IGDEILVKVTEIDKQGRINLSRKDALPD 692
>gi|402838287|ref|ZP_10886796.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
OBRC8]
gi|402273318|gb|EJU22520.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
OBRC8]
Length = 690
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 296/744 (39%), Positives = 442/744 (59%), Gaps = 59/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + VE G + + A+G+ + +T+I + +DVP + DFFPL+V+++ER
Sbjct: 6 EMELGGRTLSVEIGKIAQMANGSCIIRYADTVILVTATNSDVPRDGIDFFPLSVDFEERL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ GGF KREGR + +L RLIDRP+RP KG+ ++ Q+++ VLS D PD
Sbjct: 66 YSAGKIPGGFVKREGRPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDKDANPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ + IA+++S +P + V +GL+ D+FI+NP ++ E S++ L+++G+ DAI+
Sbjct: 126 TIAMIGSSIALSVSSIPFNGPTGSVSIGLIDDQFIINPNLEQREKSEMYLVVSGTKDAIM 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SE++++ A+ + +++I + V+ + + GKPK + P E+ K VE
Sbjct: 186 MVEAGSNEVSEDVMLNAILFAHEEIKKICDFVQKIADEVGKPKDDYYVFKPDEEVEKAVE 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E + ++ ++ +K R+ + V +D E PD L+D D
Sbjct: 246 EYSSNKMKDAIKTVDKQERQDNMEK--------------VKQDAMEHFAEIFPDNLKDVD 291
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E V +T K +R IV+ R D
Sbjct: 292 E------------------------------------VIYNITKKEVRNMIVKDKVRPDN 315
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R + IRPI G+LPR HGSA+FTRG+TQ +++ TL Q ID L+ + E +R+
Sbjct: 316 RLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMSITTLAGLSEVQVIDGLDEETE-RRYM 374
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE P RREIGHG LA+RA+EP+LPS+ +FPY IRV S + SNGS
Sbjct: 375 HHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEFPYAIRVVSEVMSSNGS 434
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+S ASVCG L+L DAGVP+K +AG+AMG++ D ++ +ILSDI G ED GDM
Sbjct: 435 TSQASVCGSTLSLLDAGVPMKDMVAGIAMGLIKDEEDV------VILSDIQGMEDFLGDM 488
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA QMDIK+ GI ++++AL QA++GR HIL EM K P LS +
Sbjct: 489 DFKVAGTKKGITAIQMDIKISGIDEDILRRALSQAREGRFHILGEMQKVIKEPREHLSPY 548
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP+I M + P+KI +IGSGGK + II+ETGV+ ID ++DG + I + + K+K+
Sbjct: 549 APMIINMMINPDKIRDVIGSGGKIINKIIDETGVK-IDIDNDGKISILSNNEEMCLKAKS 607
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II + P VG IY+ +I I +G FVEI PG+EGL HIS++ L K ED+ K G
Sbjct: 608 IIEGIVAEPEVGTIYKG-KITKIMAFGAFVEILPGKEGLLHISQMDKKRLEKVEDMFKEG 666
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D+V+VKL E++ +G+L LSR+ LL
Sbjct: 667 DVVEVKLTEIDAQGRLNLSRKVLL 690
>gi|407785042|ref|ZP_11132191.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
gi|407204744|gb|EKE74725.1| polynucleotide phosphorylase/polyadenylase [Celeribacter
baekdonensis B30]
Length = 710
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/751 (41%), Positives = 437/751 (58%), Gaps = 69/751 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V I +G+ + +ETG + RQA G V T GET + +V A DFFPL V+YQ
Sbjct: 5 VKKSIQWGEETLTLETGKIARQADGTVIATLGETSVMANVTFAKAQKPGQDFFPLTVHYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF +E ++ VLS+D ++
Sbjct: 65 EKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSHDLVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLL 263
PD +A+ AA A+ +S P IAG RVG V ++I+NP +M++ +LDL+
Sbjct: 125 DPDVVAMIAASAALTISGAPFRGPIAGCRVGFVDGEYILNPEVDDMQNLRSNPEQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E LSE+ ++ AV + ++ + + + L E C K +P
Sbjct: 185 VAGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEDCAKEPF--EFAVP 242
Query: 324 P-PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
EL+ V+ +++ I +K R A+S+ ++ + L+E
Sbjct: 243 NYAELFAAVKAAGEDKMRAAYAITDKQERVAAVSAAKDDIKATLTE-------------- 288
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
D L DE+ + K++ S LR
Sbjct: 289 ---DQLADEN----------------------------------LGSALKKLESSVLRGT 311
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
+V+ G+R DGR D +RPI GLLPR HGSALFTRGETQ L V TLG Q ID L
Sbjct: 312 VVKEGKRIDGRALDQVRPIVCETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDAL 371
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTIR+
Sbjct: 372 HGNFK-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAATDFPYTIRI 430
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCGG L++ DAGVP+K ++AGVAMG+VL+ DG IL+DI
Sbjct: 431 VSEITESNGSSSMASVCGGSLSMMDAGVPLKAAVAGVAMGLVLED-----DGEFAILTDI 485
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG E GIT+ QMDIKV GIT +MK+AL QAK GR HIL EM K S
Sbjct: 486 LGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMKQALAQAKAGRLHILGEMNK-S 544
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
+ + S HAP I M++ +KI +IGSGGK ++ I+E +G + +D DDG +KI +
Sbjct: 545 LSGAGAFSAHAPRIETMQIPVDKIREVIGSGGKVIREIVEMSGAK-VDINDDGIIKIASA 603
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
+ +++K+ +I ++ P G +Y+ +K + +G FV R+GL H+S++ + L
Sbjct: 604 NGEAIQKAYDMIYSIVAEPEEGKVYKGKVVK-LVDFGAFVNFFGKRDGLVHVSQIENRRL 662
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
DV+K G V VKL+ +D+G++RL +
Sbjct: 663 NHPSDVLKEGQDVYVKLLGFDDRGKVRLGMK 693
>gi|257096723|sp|B3DZ86.2|PNP_METI4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 707
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/756 (41%), Positives = 444/756 (58%), Gaps = 53/756 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGET-IIYTSVCLADVPSEPSDFFPLNVN 147
P +K FGD+ I+ ETG + + A G+VTV+ GET ++ T+V + ++ E DF PL V
Sbjct: 2 PEYIKRKFGDQTIVFETGKLAKFADGSVTVSYGETAVLVTAVSVTEL-KEDQDFLPLQVE 60
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y+E+ +AAGR GG+F++EGR D E+L R+IDRPLRP KG+++ETQIL +LS DG
Sbjct: 61 YREKAAAAGRFPGGYFRKEGRPTDKEILTSRMIDRPLRPLFPKGYFYETQILGTLLSADG 120
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
+ PD +A+ A A+ +S++P + VR+G + ++I+NPT +E E S +DL+ GS
Sbjct: 121 QNDPDVMAINGASAALMVSDIPFYGPVGAVRIGQIDGRWIINPTHREREISDIDLVYVGS 180
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ LMIEG EE ++A++ V+E+ K L E GKPK + +
Sbjct: 181 EHYPLMIEGSAREFPEEEFVKALEFAHQHVQEVIAAQKELAEKVGKPKRSCVLFEENLAI 240
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ E+ +L L +K R+K L+ L+E++ T I+E P
Sbjct: 241 TNRLAELYSSQLQDALYTSSKTERQKKLAKLKEEL--------------TAKILEEFP-- 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+TP ++ + + R ++E
Sbjct: 285 ----------------------------TATPR-----EITSSYDSLQKTIFRTNVLETK 311
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
RR DGR + IRPI+ ++PR+HGS+LF RGETQ+L + TL AQ +D ++
Sbjct: 312 RRCDGRGPEDIRPIAIETSVVPRSHGSSLFCRGETQALCMATLASLNEAQELDAYGGGEQ 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF L Y FPP SVGEVGRI SRREIGHG LAER+L PV+PS+ DFPY IRV S I
Sbjct: 372 SKRFLLHYFFPPFSVGEVGRITGQSRREIGHGALAERSLLPVIPSETDFPYAIRVSSEIL 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGS+SMA+VCGG LAL DAGVP+K S+AG+++G+V +E +L+DI G ED
Sbjct: 432 ESNGSTSMATVCGGSLALMDAGVPLKTSVAGISVGLVKGKEEDFDWSRYCLLTDILGLED 491
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFK+AG GIT FQ+D+K+ GI L VM KA+ Q++ R IL M K P
Sbjct: 492 HYGDMDFKIAGTRKGITGFQLDLKLRGIPLDVMAKAIFQSQKARMVILDCMDKVINAPRA 551
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+SKHAP I +K+ P+KI L+IG GGK +K I E+G E I EDDGTV I + SL
Sbjct: 552 EISKHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAE-ITIEDDGTVMIYSSSADSL 610
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E ++ +I ++ TVG IYR+ ++ S+ +G F+EI EGL HISELS + + +
Sbjct: 611 EAAREMIEDMVGEVTVGGIYRS-KVVSVKDFGCFIEIKGKGEGLVHISELSDTPVRRVDQ 669
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
VV+VG+ + VK I V++KG+ + SR+A + E A+
Sbjct: 670 VVRVGEEIWVKCIGVDEKGRYKFSRKAAMKELHAKR 705
>gi|418055354|ref|ZP_12693409.1| Polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans 1NES1]
gi|353210936|gb|EHB76337.1| Polyribonucleotide nucleotidyltransferase [Hyphomicrobium
denitrificans 1NES1]
Length = 734
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 318/759 (41%), Positives = 441/759 (58%), Gaps = 67/759 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R++ +ETGH RQA AV G+T + +V A DFFPL VNYQER
Sbjct: 7 VEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLTVNYQER 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR + E L RLIDRP+RP ++GF +ETQ++ V+S+D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPTEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVMSHDLENDP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L + AA A+ LS +P I RVGL+G + ++NP EM +S+LDL++AG+ DA+
Sbjct: 127 DILGMVAASAALTLSGLPFLGPIGAARVGLIGGELVLNPMIDEMIESKLDLVVAGTADAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK-H 330
+M+E L E +++AV G ++ + + L E K I++P Y
Sbjct: 187 MMVESEAKELPESQMLEAVMFGHKHMQPVIQAIIKLAEKAAKEPW--DIQIPDKAKYAGE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V+++A + L + K K R+ + ++ V SE + D
Sbjct: 245 VKKLAEKTLKQAFSTKEKGKRQDLVGEAKKAV----SEGIAIPAD--------------- 285
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
D +E+V L S+ FK + +R +++ R
Sbjct: 286 -DPNEKV-----------------------LLSDA-----FKSLEMDIMRGDVLKTKMRI 316
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S +LPR HGSALFTRGETQ+L V TLG + Q +D+LE + +R
Sbjct: 317 DGRDLKTVRPILSEVRVLPRTHGSALFTRGETQALVVATLGTGEDEQYVDSLEGTKK-ER 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGEVGR+G+P RREIGHG LA RA+ P+LPS DFPYT+RV S ITESN
Sbjct: 376 FLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQEDFPYTLRVVSEITESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+K +AG+AMG++ + D+F ++LSDI G ED G
Sbjct: 436 GSSSMATVCGSSLALMDAGVPLKAPVAGIAMGLIKEGDDF------VVLSDILGDEDHLG 489
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG +G+T+ QMDIK+ GIT +M+ AL QA DGR HIL EM K L
Sbjct: 490 DMDFKVAGTANGVTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAKALTGAREELG 549
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +K+ +KI +IGSGG ++ I+ E+G + ID EDDGTVKI + + S+EK+
Sbjct: 550 EFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAK-IDIEDDGTVKIASANRESIEKA 608
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
A I +T P VG IY+ +K + +G FV ++GL HIS+L+ VVK
Sbjct: 609 LARIRGITSEPEVGQIYKGKVVK-VMEFGAFVNFFGAKDGLVHISQLAPGRPESVGAVVK 667
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL-------LPEADAE 842
G V VKL+ +D+G+ RLS + + +P A+ E
Sbjct: 668 EGQEVYVKLLGFDDRGKTRLSMKIVDQTTGQEIPRAEGE 706
>gi|424589892|ref|ZP_18029339.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1037(10)]
gi|408036066|gb|EKG72513.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1037(10)]
Length = 708
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 432/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIQAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|307718799|ref|YP_003874331.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6192]
gi|306532524|gb|ADN02058.1| polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6192]
Length = 709
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 324/743 (43%), Positives = 440/743 (59%), Gaps = 64/743 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV I G R++++ TG M RQA+GAV G T + + C E DF PL+V+Y E
Sbjct: 4 SVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++ AAG+ GGFFKREGR ++ E+LV RLIDRP+RP K F E QI+ +S D ++
Sbjct: 64 KYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQINT 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA AV +S++P + VRVGLV F++NPT +++E S LD+++AG+ +
Sbjct: 124 PDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLEG 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKM--LDTIKLPPPELY 328
I M+EG +SE+ L++A+++ + A+ + L E GK K+ L+ P L
Sbjct: 184 ITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELRERAGKEKLPLLEEESFP---LK 240
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V A L + +K K+ R KA+ E+V T E IPD
Sbjct: 241 DEVIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGER--------------IPD-- 284
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E E V +E+ + +R I+E G
Sbjct: 285 ----EQERAF-----------------------------NAVIEELEREIVRSSILERGI 311
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R+DGR + IRPI+ G+LPR HGSALFTRGETQ+LA+ TLG Q +D+LE D
Sbjct: 312 RTDGRGPEDIRPITCEIGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR- 370
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+ F L Y+FPP SVGEVGR+ RREIGHG LA RALE VLPS +DFPYT+RV S I E
Sbjct: 371 ENFMLHYNFPPFSVGEVGRL-YTGRREIGHGHLAHRALEAVLPSKDDFPYTLRVVSEILE 429
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG L+L +AGVPIK +AG+AMG+V D G+ T +ILSDI G ED
Sbjct: 430 SNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTD-----GERT-VILSDILGEEDH 483
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG EDGITAFQMDIK+ I M+KAL+QA+ GR HIL M + P
Sbjct: 484 FGDMDFKVAGTEDGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPRPE 543
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
LS++AP I V PEKI LIIGS GK ++ I E V I+ +DDG++ I +K + E
Sbjct: 544 LSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISESFDV-TINIDDDGSIVIYSKQKENAE 602
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++KA I + P VG +Y ++K I +G F+E PGREGLCHIS++S + + DV
Sbjct: 603 QAKAYIDKMLEEPEVGKVY-TGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHDV 661
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS 831
VK+ V V+++E++ G++ L+
Sbjct: 662 VKLNQEVPVRILEIDRLGRVNLT 684
>gi|422921872|ref|ZP_16955077.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BJG-01]
gi|341647489|gb|EGS71567.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BJG-01]
Length = 709
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 432/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|157368740|ref|YP_001476729.1| polynucleotide phosphorylase/polyadenylase [Serratia proteamaculans
568]
gi|187611288|sp|A8G911.1|PNP_SERP5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157320504|gb|ABV39601.1| Polyribonucleotide nucleotidyltransferase [Serratia proteamaculans
568]
Length = 705
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 309/757 (40%), Positives = 435/757 (57%), Gaps = 59/757 (7%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTLTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSLNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + +++++NPT+ E+++S LDL++AG+
Sbjct: 124 VNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINNQYVLNPTSDELKESSLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY 328
A+LM+E D LSE+ ++ AV G + + + + +LV GK K L+
Sbjct: 184 GAVLMVESEADVLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKAKWDWQAPAVNEALH 243
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V E+A L I K R + +++ V+ L +++DET+ + E I D+L
Sbjct: 244 ARVAELAEGRLGDAYHITEKQERYAQVDAIKSSVVETL-----LAQDETLDVSE-IQDIL 297
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
V +R R++ G
Sbjct: 298 -------------------------------------------GSVEKNVVRSRVLRGEP 314
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ +D L + +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGE-KT 373
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
F Y+FPP SVGE G +G+P RREIGHG LA+R + ++P DFPYT+RV S ITE
Sbjct: 374 DSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITE 433
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + D F ++LSDI G ED
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEQDNF------VVLSDILGDEDH 487
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 488 LGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGD 547
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+ AP IH +++ P+KI +IG GG ++++ EETG I+ EDDGTVKI A D +
Sbjct: 548 ISQFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAK 606
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+ I +T VG IY+ ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 607 FAIRRIEEITAEIEVGRIYQG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665
Query: 809 VKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
+++G V VK++EV+ +G++RLS + A PEA + P
Sbjct: 666 LQMGQEVPVKVLEVDRQGRVRLSIKEATAPEAGSPAP 702
>gi|253573573|ref|ZP_04850916.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251847101|gb|EES75106.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 702
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/758 (40%), Positives = 453/758 (59%), Gaps = 62/758 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ G R +++ETG + +QA+ AV V G+T + +C SEP D FFPL VNY+
Sbjct: 5 VRMDLGGRPLILETGRLAKQANAAVMVRYGDTAV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ A G+ GGF KREGR + +L RL DRP+RP +GF ++ QI++ V+S D
Sbjct: 62 EKLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDVQIVNLVMSVDQDC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ ++ A+++S+VP + I GV VG V +F++NP + E S + +++AG+ D
Sbjct: 122 EPEIASMIGTSAALSISDVPFNGPIGGVAVGRVNGEFVINPDVAQQEASDIYVVVAGTKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E + + EE++++A+ G + +++I ++ LV++ GK KM + E+ +
Sbjct: 182 AIMMVEAEANEVPEEVMLEAIMFGHEEIKKIVAVIEDLVKVAGKEKMQVQLHTVNEEVNR 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V A + L++ ++I K R+ A+ ++ DETV
Sbjct: 242 EVRAYAQDRLIEAVKIAEKHARQDAIDAI---------------NDETVA---------- 276
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
H + K + TP L + DVK V ++ + +RR I R
Sbjct: 277 -------------------HFEEKYIE-TPELLA--DVKEVLHDIVKEEVRRLITHEKVR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRPI LLPR HGS LFTRG+TQ+L++ TLG Q +D ++ + E K
Sbjct: 315 PDGRKLDEIRPIECDISLLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGIDLE-ESK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + AP RREIGHG L ERAL V+P +++FPYTIR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPPESEFPYTIRLVSEVLES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGS+S AS+C LA+ DAGVPIK +AGVAMG++ D + IL+DI G ED
Sbjct: 434 NGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGEHVS------ILTDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +G+TA QMDIK+ GI ++ AL+QA++GR IL++M++ P L
Sbjct: 488 GDMDFKVAGTAEGVTAIQMDIKIDGIDRQILSDALKQAREGRLFILSKMMERIQKPKEHL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I IM++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + K
Sbjct: 548 SPYAPKITIMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGRVYIASTNEEMNNK 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+++II + VG+IY +K I +G FVEI PG++GL HIS+LS+ +AK EDVV
Sbjct: 607 ARSIIEGIVKEVVVGEIYVGT-VKRIEKFGAFVEILPGKDGLVHISQLSTERVAKVEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
+GD V VK+ E++++G++ LSR+A+L A+ + P K
Sbjct: 666 AIGDTVTVKVTEIDNQGRINLSRKAVLT-AETDKTPSK 702
>gi|218282268|ref|ZP_03488567.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
gi|218216736|gb|EEC90274.1| hypothetical protein EUBIFOR_01149 [Eubacterium biforme DSM 3989]
Length = 713
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 295/749 (39%), Positives = 434/749 (57%), Gaps = 49/749 (6%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ F R I VETG + +QA GAV + G+T+ ++ C ++ E DFFPL V+++E+
Sbjct: 8 LDFCGRGITVETGEIAKQADGAVIIRYGDTVTLSTACASNQAKEGIDFFPLTVSFEEKLY 67
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
+ G+ GGF +REGR +H L R+IDRP+RP +GF +E Q+++ VLS D P+
Sbjct: 68 SVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVDQDASPEM 127
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A +A+ +S++P + IAG +VG + + + NPT +ME+S +DL +AG+ A+ M
Sbjct: 128 AAMFGASLALCISDIPFNGPIAGCKVGRINGELVANPTVAQMEESDIDLTVAGTAQALNM 187
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E +SEE ++ A+ G + ++++ + +V CGK K + + + V
Sbjct: 188 VEAGAKEVSEEDMLAALMFGHEQIKKLCAFQEEIVAACGKEKREIELYAVDETIDREVRS 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
++ + IK K+ R + L ++ +++ Y S+ E V+ ++ +
Sbjct: 248 NFEAQIRAAVSIKEKLERYGKIDDLTDEAAEMIANKEYASEKEQNNAVKQAREICRGIEA 307
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
DE +RR I+E R DGR
Sbjct: 308 DE-------------------------------------------VRRLIIEDKVRPDGR 324
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S+ LLPR HGSALFTRGETQ L+ TLG Q ID+L D KRF
Sbjct: 325 QIDEIRPLNSQVDLLPRVHGSALFTRGETQVLSTTTLGALNDNQIIDDLTVVDS-KRFMH 383
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP VGE GR+G P RREIGHG L ERAL VLPS ++FPYTIR + + ESNGSS
Sbjct: 384 HYNFPPYCVGETGRMGNPGRREIGHGALGERALAQVLPSVDEFPYTIRTVADVMESNGSS 443
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C G ++L AGVPIK +AG+AMG+++D D G +L+DI G ED GDMD
Sbjct: 444 SQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDDDS----GKYTVLTDIQGMEDHFGDMD 499
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG ++GITA QMDIKV GIT + ++AL QA R IL ML C P LS +A
Sbjct: 500 FKVAGTKNGITALQMDIKVTGITKNIFEEALAQAHKARLEILDNMLACISEPRTQLSPYA 559
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I +M + P+KI +IG GGK + II + ID +DDG V I D ++EK+K +
Sbjct: 560 PKIAMMNIDPDKIKDVIGPGGKMINEIIAQCDNVKIDIDDDGKVVIYHNDYDTIEKAKQM 619
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
IS++ V VGD+Y ++ + +G FV + +GL HIS++S + + K EDV+K+GD
Sbjct: 620 ISDIVRVAKVGDVYA-AKVVRLEKFGAFVNLFGNTDGLLHISKISHHRVDKVEDVLKLGD 678
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAE 842
++DVK+ E+++KG++ +S +ALLP+ E
Sbjct: 679 VIDVKVTEIDNKGRINVSAKALLPKPKTE 707
>gi|149913069|ref|ZP_01901603.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
gi|149813475|gb|EDM73301.1| hypothetical protein RAZWK3B_03735 [Roseobacter sp. AzwK-3b]
Length = 712
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 319/754 (42%), Positives = 439/754 (58%), Gaps = 75/754 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V + +G+ + +ETG + RQA G+V T GET + +V A P DFFPL V+YQ
Sbjct: 6 VKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKEPKPGQDFFPLTVHYQ 65
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP + GF HE ++ VLS+D ++
Sbjct: 66 EKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVSGFKHEVLVMCTVLSHDLVN 125
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLL 263
PD +A+ AA A+ +S P IAG RVG ++I+NP ++M D +LDL+
Sbjct: 126 DPDIVAMIAASAALTISGAPFMGPIAGCRVGYSDGEYILNPDVEDMHDLRNNPDQRLDLV 185
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E LSE+ ++ AV + ++ + + + L E K +
Sbjct: 186 VAGTKDAVMMVESEAYELSEDEMLGAVTFAHEQIQPVIDLIIDLAEDTAK----EPFDFS 241
Query: 324 PPE---LYKHVEEIAGEELVKV-LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVG 379
PP+ LY V+ AGE+ V+ I +K R A+S+ +E + LSE
Sbjct: 242 PPDYSALYDAVKA-AGEDKVRAAYAITDKQERTAAVSAAKEAIKASLSE----------- 289
Query: 380 IVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFL 439
+ LED P L S K++ + L
Sbjct: 290 ------EQLED----------------------------PNLGS------ALKKLEASVL 309
Query: 440 RRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRI 499
R +V+ G+R DGR D +R I S GLLPR HGSALFTRGETQ+L V TLG Q I
Sbjct: 310 RGDVVKTGKRIDGRSLDTVRQIVSETGLLPRTHGSALFTRGETQALVVTTLGTGDDEQII 369
Query: 500 DNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYT 559
D L + F L Y+FPP SVGE GR+G P RRE+GHG LA RAL+ VLP+ DFPYT
Sbjct: 370 DALHGNFR-SNFLLHYNFPPYSVGEAGRVGPPGRREVGHGKLAWRALQAVLPAPTDFPYT 428
Query: 560 IRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLIL 619
IRV S ITESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG +L
Sbjct: 429 IRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILED-----DGEYAVL 483
Query: 620 SDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEML 679
+DI G ED GDMDFKVAG E GIT+ QMDIKV GIT +MKKAL QAKDGR HIL EM
Sbjct: 484 TDILGDEDHLGDMDFKVAGTEKGITSLQMDIKVAGITPEIMKKALAQAKDGRLHILNEM- 542
Query: 680 KCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKI 739
+ + S HAP I M++ +KI +IGSGGK ++ I+E +G + +D D+G +KI
Sbjct: 543 SNALTEAGDFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKI 601
Query: 740 TAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSS 799
+ + +++K+ +I ++ P G IY+ +K I +G FV R+GL H+S++ +
Sbjct: 602 ASPNSEAIQKAYEMIHSIVAEPEEGGIYKGTVVK-IVDFGAFVNFFGKRDGLVHVSQIEN 660
Query: 800 NWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
L DV+K G V VKL+ +D+G++RLS +
Sbjct: 661 RRLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMK 694
>gi|398814365|ref|ZP_10573046.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. BC25]
gi|398036634|gb|EJL29843.1| polyribonucleotide nucleotidyltransferase [Brevibacillus sp. BC25]
Length = 715
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 310/752 (41%), Positives = 442/752 (58%), Gaps = 59/752 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R++ +E G M +QA G+V V G+T I ++V ++ P +P DFFPL VNY+ER A G+
Sbjct: 15 RKLTLEFGKMAKQAHGSVLVRYGDTAILSAVTVSKEP-KPLDFFPLTVNYEERLYAVGKI 73
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR + +L RLIDRP+RP GF ++ QI++ VLS D P+ A+
Sbjct: 74 PGGFIKREGRPSEKAILASRLIDRPVRPLFADGFRNDVQIVNTVLSVDQDCSPEIAAMIG 133
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A+ +SE+P IAGV VG + +F++NPT + E S + L +AG+ AI M+E
Sbjct: 134 TSAALCVSEIPFEGPIAGVIVGRIDGEFVINPTVAQAEKSDIHLTVAGTHKAINMVEAAA 193
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
D + E ++++A+ G + ++++ +V GKPKM + PE+ + V E A
Sbjct: 194 DQVPEAVMLEAIMAGHEVIQQLVEFQNMIVAEIGKPKMEVILHEVDPEIDQAVREFAEAR 253
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
L + ++I+ K R A+ ++ + ++ + +KD
Sbjct: 254 LKEAVRIEEKQARYDAIDDIKAE-----TKEHFAAKD----------------------- 285
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
P++ + + SEV +V EV RR I + R DGR I
Sbjct: 286 -------------PEAYTAQEKMISEVLGNIVKDEV-----RRLITDEKVRPDGRALGEI 327
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RP+SS +L R HGSA+FTRG+TQ+L+V TLG Q +D L +E KRF Y+FP
Sbjct: 328 RPLSSETTILSRTHGSAMFTRGQTQALSVCTLGALGDVQILDGL-GLEESKRFMHHYNFP 386
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + P RREIGHG L ERA+EP++PS+ +FPYTIR+ S + ESNGS+S AS+
Sbjct: 387 PYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEVEFPYTIRLVSEVIESNGSTSQASI 446
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
C LAL DAGVPIK +AG+AMG+++ DE + IL+DI G ED GDMDFKVAG
Sbjct: 447 CASVLALMDAGVPIKAPVAGIAMGLIMSKDE----QSFSILTDIQGMEDHLGDMDFKVAG 502
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
E G+TA QMDIK+ GI +++ AL+QA++GR HIL M+ P LS +AP I
Sbjct: 503 TEAGVTAIQMDIKISGINREILELALEQAREGRLHILKHMMSTISEPRKELSPYAPKIMT 562
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M + PEKI +IG G+ + IIEETGV+ ID E DG V I + + + ++K II +L
Sbjct: 563 MTINPEKIRDVIGPQGRVINKIIEETGVK-IDIEQDGRVFIASINHEANLRAKQIIEDLV 621
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG +Y +K + YG F+E+ G+EGLCHIS+L+ +AK EDVV VGD V+VK
Sbjct: 622 REVAVGQVYLGT-VKRVEKYGAFIELFAGKEGLCHISQLAEERVAKTEDVVAVGDKVEVK 680
Query: 819 LIEVNDKGQLRLSRRALLPE-----ADAENPP 845
+ E++D+G++ LSR+A+L E AE PP
Sbjct: 681 VTEIDDQGRVNLSRKAVLKEQAAAAQAAETPP 712
>gi|373857338|ref|ZP_09600080.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. 1NLA3E]
gi|372452988|gb|EHP26457.1| polyribonucleotide nucleotidyltransferase [Bacillus sp. 1NLA3E]
Length = 706
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/745 (40%), Positives = 438/745 (58%), Gaps = 58/745 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + VE G + +QASGA V GET++ ++ + P + DFFPL VNY+ER
Sbjct: 10 IDWAGRTLTVEIGQLAKQASGAALVRYGETVVLSTATASKEP-KALDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF ++ Q++S ++S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVVSIIMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+ +S++P IAG VG + KF++NPT + E S ++L +AG+ AI M
Sbjct: 129 AAMFGSSLALCVSDIPFEGPIAGAVVGRIDGKFVINPTVDQAEKSDINLTVAGTKYAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G + ++ + + +V GKPK + EL + E
Sbjct: 189 VEARADQVPEEVMLEAIMFGHEEIKRLIAFQEEIVAQIGKPKREIALFELDKELEAEIRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
EE+V +Q++ K R A+ +++EKV+ Y +++ ++ + +L+
Sbjct: 249 FCEEEMVAAIQVQEKHEREDAIKAVKEKVMA-----KYEAEEADANDLKQVKQILDK--- 300
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+V GEV RR I R DGR
Sbjct: 301 ----IVKGEV------------------------------------RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP+SS G+LPR HGS LFTRG+TQ+L++ TLG Q +D L ++E KRF
Sbjct: 321 KIDEIRPLSSEVGVLPRTHGSGLFTRGQTQALSICTLGAMGDVQILDGLGIEEE-KRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE G P RREIGHG L ERALEPVLPS+ DFPYTIR+ S + ESNGS+
Sbjct: 380 HYNFPNFSVGETGPSRGPGRREIGHGALGERALEPVLPSEKDFPYTIRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+C +A+ DAGVPIK +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICASTMAMMDAGVPIKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LSK+A
Sbjct: 494 FKVAGTSQGVTALQMDIKIDGLSREILQEALQQAKKGRMHILESMLNTLAQPKTELSKYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKILTMNINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINDEMNQKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ +G +Y ++K I +G FVEI G++GL HISEL+ + K ED++ +GD
Sbjct: 613 IEDIVREVEIGQMYLG-KVKRIEKFGAFVEIFAGKDGLVHISELAEERVGKVEDILALGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPE 838
+ VK+ EV+ +G++ LSR+A+L E
Sbjct: 672 EILVKVTEVDKQGRVNLSRKAVLKE 696
>gi|407893228|ref|ZP_11152258.1| polynucleotide phosphorylase/polyadenylase [Diplorickettsia
massiliensis 20B]
Length = 693
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 315/757 (41%), Positives = 442/757 (58%), Gaps = 69/757 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVT-DGETIIYTSVCLADVPSE-PSDFFPLN 145
+P+ G Q+ +ETG + RQA+ AV VT +G T++ T V P E PSDFFPL
Sbjct: 2 KPLKKVFELGTHQVTLETGTVARQATAAVVVTLEGTTVLVTVVGRKPSPHEKPSDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
V+YQER AAGR GG+FKREGR + E+L RLIDRP+RP + F HE QI++ VLS
Sbjct: 62 VHYQERSYAAGRVPGGYFKREGRPTEKEILTSRLIDRPIRPLFPETFRHEVQIVATVLSS 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ D A+ A A+ALS +P IA VRVG + + +NPT + +E+S+LDL++A
Sbjct: 122 NPEINADIPAMLGASAALALSGLPFKGPIAAVRVGYIKGGYQLNPTFKALENSELDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E LSE+ ++ A+ G ++ +K LV G P + + P
Sbjct: 182 GTESAVLMVESQAAELSEDAMLGAILFGHQTMQPAIQAIKELVAEAGNP----SWEWSTP 237
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
E + EL + Q+ KI R+ L +L+EK DE G+ E
Sbjct: 238 EASQ-----PQAELESIYQVAEKISRKTQLDALQEKACQKW-------MDEEKGVTE--- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
+ V+D + + +R RI+
Sbjct: 283 ----------KAVLD-----------------------------CLAALEERCVRERILN 303
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR +RPI+ G LPR HGS LFTRGETQ++ V TLG + AQ ++ L+ +
Sbjct: 304 GLPRIDGRDQKTVRPITISPGFLPRTHGSVLFTRGETQAIVVATLGTDRDAQIVEALDGE 363
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP SVGE G++G+P RREIGHG LA+RAL VLPS++DFPY +R+ S
Sbjct: 364 GR-ETFMLHYNFPPYSVGETGQVGSPKRREIGHGNLAKRALRAVLPSESDFPYVLRIVSE 422
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMA+VCG LAL DAGVP+K +AG+AMG+V + + F +L+DI G
Sbjct: 423 ITESNGSSSMATVCGASLALMDAGVPLKKPVAGIAMGLVKEAERFA------VLTDILGD 476
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG +GITA QMDIK+ GIT +++ AL+QAK+GR HIL M P P
Sbjct: 477 EDHLGDMDFKVAGTAEGITALQMDIKIDGITEEILRAALEQAKEGRHHILGVMNNVLPLP 536
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S +AP I +K+ P+KI +IG GG ++SI EETG ID DDG V+I+ +L
Sbjct: 537 RIEVSPYAPRITTLKINPDKIRDLIGKGGATIRSITEETGT-LIDISDDGLVRISTSNLQ 595
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ E + I +T VG IY +K + +G FV I PGR+GL HIS++S+ +
Sbjct: 596 ACEAALDRIKKVTAEVEVGRIYEGPVVK-LTDFGAFVNILPGRDGLVHISQISNERVENV 654
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D VK G +V VK++EV+ +G++RL+ + + +++A+
Sbjct: 655 TDKVKEGQIVKVKVLEVDRQGRVRLTMKDVEMQSEAQ 691
>gi|418325822|ref|ZP_12937025.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU071]
gi|365227568|gb|EHM68761.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU071]
Length = 701
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 311/750 (41%), Positives = 447/750 (59%), Gaps = 69/750 (9%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+++N + + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINSSVADKEISRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV E+ H++
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF-------------QQEIIDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTI----LSENGYVSKDETVGIVETIP 385
I +E V V + ++ + + K+L+ L+E VLT EN K+E VG
Sbjct: 228 PIK-QEFVPVERDEDLVEKVKSLTEDKGLKETVLTFDKQQRDENLDALKEEVVG------ 280
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L++ED + E +V +V + ++ + +RR I +
Sbjct: 281 HFLDEEDPENETLVK-------------------------EVYAILNDLIKEEVRRLIAD 315
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L +
Sbjct: 316 EKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPE 375
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
E KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S
Sbjct: 376 VE-KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYTIRIVSE 434
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
+ ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G
Sbjct: 435 VLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGM 488
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
EDA GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML P
Sbjct: 489 EDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLHTIEQP 548
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 549 REELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQA 607
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ ++K II ++T VG +Y + ++K I YG FVE+ PG++ L HIS++S + K
Sbjct: 608 MINRAKEIIEDITREAEVGQVY-HAKVKRIEKYGAFVELFPGKDALLHISQISQERINKV 666
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
EDV+K+GD ++VK+ E++ +G++ S + L
Sbjct: 667 EDVLKIGDTIEVKITEIDKQGRVNASHKVL 696
>gi|73662800|ref|YP_301581.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|117940130|sp|Q49X62.1|PNP_STAS1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72495315|dbj|BAE18636.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 697
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/747 (40%), Positives = 452/747 (60%), Gaps = 61/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + +R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWANRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLMVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ ++ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYKYDVQIMNTVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV+VG + ++++NPT + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVKVGYIDGEYVINPTVAQKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHV 331
M+E ++E +++A+ G ++ + N + +V+ +PK + + E L + V
Sbjct: 188 MVEAGASEITESEMLEAIFFGHSEIQRLVNFQQEIVDHI-QPKKKAFVPVEKDEVLVEKV 246
Query: 332 EEIAGEELVK--VLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+++ E +K VL +K R L +L+EKV + ++
Sbjct: 247 KQLTQENGLKDAVLTF-DKQQRDINLDALKEKVAA---------------------EFID 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ED D EV++ +V + ++ + +RR I E R
Sbjct: 285 EEDADNEVLIK-------------------------EVNSILNDLVKEEVRRLIAEEKIR 319
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRP+ S G+LPRAHGS LFTRG+TQ+L+V+TLG Q +D L ++E K
Sbjct: 320 PDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVLTLGSMSEYQILDGL-GEEEQK 378
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FP SVGE G + +P RREIGHG L ERAL ++P DFPYT+R+ S + ES
Sbjct: 379 RFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIPDLKDFPYTVRIVSEVLES 438
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 439 NGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMEDAL 492
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +GITA QMDIK+ G+T ++K+AL QA++GR IL ML+ + L
Sbjct: 493 GDMDFKVAGTAEGITAIQMDIKIDGLTKEIIKEALDQAREGRLAILDHMLQTIDTSRSEL 552
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP + M +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D ++ +
Sbjct: 553 SAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDKDAIAR 611
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+++II ++T VG +Y ++K I YG FVE+ PG++ L HIS++++ + K EDV+
Sbjct: 612 ARSIIEDITREAEVGQVYEG-KVKRIEKYGAFVELFPGKDALVHISQIANERIDKVEDVL 670
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
KVGD+ +K+ E++ +G++ S +ALL
Sbjct: 671 KVGDIFKIKVTEIDKQGRVNASHKALL 697
>gi|153826503|ref|ZP_01979170.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|254226546|ref|ZP_04920129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
gi|254291886|ref|ZP_04962668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
AM-19226]
gi|125620950|gb|EAZ49301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V51]
gi|149739683|gb|EDM53890.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-2]
gi|150422172|gb|EDN14137.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
AM-19226]
Length = 708
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 432/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|295696164|ref|YP_003589402.1| polyribonucleotide nucleotidyltransferase [Kyrpidia tusciae DSM
2912]
gi|295411766|gb|ADG06258.1| polyribonucleotide nucleotidyltransferase [Kyrpidia tusciae DSM
2912]
Length = 727
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/741 (40%), Positives = 436/741 (58%), Gaps = 60/741 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G R++++ETG + +QA+ AVTV G+T++ +V ++ P + DFFPL VNY+ER A
Sbjct: 9 LGGRRLVLETGKLAKQATAAVTVRYGDTVVLATVTMSKEPKD-LDFFPLTVNYEERLYAV 67
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP +GF +E Q+++ VLS D P+
Sbjct: 68 GKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVVALVLSVDQDCPPEIAG 127
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A+ +S +P IAG+ VG V +F+VNPT + E S + L++AGS A++M+E
Sbjct: 128 MIGTSAALTISPIPFDGPIAGLVVGRVDGQFVVNPTVAQTEKSDMHLVVAGSRSAVVMVE 187
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+ + E ++ A+ G + ++ + + + + + G+ K++ + P E+ + V E A
Sbjct: 188 AGANEVPESEMLDAIMFGHEQLQPLIDLQERMRQEIGQEKIVPELHRPQEEIVQAVREFA 247
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E+L ++ K+ R A+ ++EE+ +E
Sbjct: 248 TEKLKTAIRTPEKLAREDAIRAVEEETQEHFAE--------------------------- 280
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ EG D+ V ++ + +R I+ G R DGR
Sbjct: 281 ------QFPEG-----------------AADIAEVLHDILKEEVRSAILNEGMRPDGRAL 317
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D IRPIS GLLPR HGS LFTRG+TQ+L+V TLG Q +D L+ + E KRF Y
Sbjct: 318 DEIRPISCEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLE-ESKRFMHHY 376
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE I APSRR+IGHG L ERALEPV+PS+ +FPYTIR+ S + ESNGS+S
Sbjct: 377 NFPPFSVGEARPIRAPSRRDIGHGALGERALEPVIPSEEEFPYTIRLVSEVLESNGSTSQ 436
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CG LAL DAGVPIK +AGVAMG+V + D IL+DI G ED GDMDFK
Sbjct: 437 ASICGSTLALMDAGVPIKAPVAGVAMGLVKEGDRVA------ILTDIQGMEDHLGDMDFK 490
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG G+TA QMDIK+ G+T ++ AL+QA GR IL +ML+ P LS +AP
Sbjct: 491 VAGTAAGVTALQMDIKIKGLTRDILASALEQAHRGRMFILGKMLEVIQQPRQQLSPYAPR 550
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I M++ P+KI +IG GG+ + II++TGV+ ID E DG + I A D + E+++ +I
Sbjct: 551 IITMRIHPDKIREVIGPGGRVINKIIDDTGVK-IDIEQDGRIFIAAVDQEAGERARKMIE 609
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+ VG Y + + + YG FVEI PG+EGL HIS+L+ + + EDVV+VGD +
Sbjct: 610 GIVAEVEVGHTY-HGRVTRVEKYGAFVEILPGKEGLVHISQLADERVGRTEDVVRVGDEI 668
Query: 816 DVKLIEVNDKGQLRLSRRALL 836
DVK+ E++ +G++ LSRR +L
Sbjct: 669 DVKVTEIDSQGRINLSRREVL 689
>gi|407801051|ref|ZP_11147895.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax sp. W11-5]
gi|407024488|gb|EKE36231.1| polynucleotide phosphorylase/polyadenylase [Alcanivorax sp. W11-5]
Length = 697
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 316/749 (42%), Positives = 436/749 (58%), Gaps = 66/749 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V + +G +++ETG + RQA+GAV VT GET + + FFPL VNYQ
Sbjct: 5 VRKEFQYGRDTVVLETGRIARQATGAVMVTIGETAVLVTAVGKKEADPNKGFFPLTVNYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREGR + E L CRLIDRP+RP KGF +E QI++ V+S D
Sbjct: 65 EKTYAAGRIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPKGFMNEVQIIATVMSADKDA 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A+A+S +P + + RVG + D +++NP E++DS LDL++AG++
Sbjct: 125 DPDIAALLGTSAALAISGIPFAGPLGAARVGFINDMYVLNPRYSELKDSALDLVVAGTEA 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMC---GKPKMLDTIKLPPPE 326
A+LM+E L+E+ ++ AV G E+ +KA+ E GKP+
Sbjct: 185 AVLMVESEAKELTEDQMLGAVLFGH---MEMQAAIKAIGEFAAEAGKPQWDWQPAATNTA 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
LY+ V+ + + I +K R L L K+E V T
Sbjct: 242 LYEQVKARFAGAVAEAYTITDKQQRYTRLGDL---------------KNEAVEAFAT--- 283
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
EE G D+G+V +F ++ +R +V G
Sbjct: 284 -------GEE----GAPDKGEVS-------------------ALFGKLEKATVREAVVSG 313
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR + +RPI+ G LP+AHGSALFTRGETQ++ V TLG + AQ ID LE
Sbjct: 314 KPRIDGRALNTVRPINIEAGGLPKAHGSALFTRGETQAIVVATLGGMRDAQLIDALEGSR 373
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ RF L Y+FPP VGE G +G+P RREIGHG LA R ++ VLP++ +FPY IRV S I
Sbjct: 374 Q-DRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLARRGVQAVLPNEQEFPYAIRVVSEI 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK +AG+AMG+V + DG +LSDI G E
Sbjct: 433 TESNGSSSMASVCGTSLALMDAGVPIKAPVAGIAMGLVKEE-----DGRFAVLSDILGDE 487
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG E G+TA QMDIK+ GIT +M+ AL QA++GR HIL EM K P
Sbjct: 488 DHLGDMDFKVAGTEKGVTALQMDIKIQGITEEIMETALNQAREGRLHILGEMNKVISKPR 547
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITA--KDL 744
LS +AP + +K+ P+KI +IG GG ++++ EE ID EDDG+VK+ A +DL
Sbjct: 548 AELSANAPTLITLKINPDKIRDVIGKGGATIRALCEEFSAN-IDIEDDGSVKVYAETRDL 606
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++ +K I +T P VG+IY+ +++ +G FVEI PG EGL HIS+++ + K
Sbjct: 607 AAAAAAK--IEGITAEPEVGEIYQGKVTRTV-DFGAFVEIFPGTEGLLHISQIAQERVEK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D VK GD++ VK+++V+ +G+++LS +
Sbjct: 664 VTDYVKEGDVIKVKVLDVDQRGRIKLSMK 692
>gi|297580773|ref|ZP_06942699.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
gi|297535189|gb|EFH74024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC385]
Length = 709
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 432/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|312885115|ref|ZP_07744800.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309367215|gb|EFP94782.1| polynucleotide phosphorylase/polyadenylase [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 708
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/748 (40%), Positives = 431/748 (57%), Gaps = 58/748 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + A+A+S +P + I RVG + + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELESSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D A+LM+E D L+EE ++ AV G D + + N + P
Sbjct: 182 GTDSAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFKAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R +
Sbjct: 242 ALVTKIAELAETKLVEAYQITEKMARYDRIHE---------------------------- 273
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
+ GEV+E + P++ ++ +F ++ +RR I+
Sbjct: 274 -------------IAGEVNEALLAENPEANTK--------EIHTIFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R ++ ++PS ++FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAIMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH+MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHMMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAATEGA 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIAEKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D + G V VK++E++ +G++RLS +
Sbjct: 664 SDYLSEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|289550934|ref|YP_003471838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis HKU09-01]
gi|385784561|ref|YP_005760734.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis N920143]
gi|418414233|ref|ZP_12987449.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289180466|gb|ADC87711.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis HKU09-01]
gi|339894817|emb|CCB54113.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis N920143]
gi|410877871|gb|EKS25763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 698
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/747 (41%), Positives = 449/747 (60%), Gaps = 61/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V K+++NPT ++ E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTLEQKEQSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G D E+K LVE ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHD-------EIKRLVEF-------------QQQIVDHLQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+ E + V + + + R +AL+ L+E VLT + + DE E + ++
Sbjct: 228 PVKS-EFIPVERDEALVSRVQALTEEKGLKETVLTFDKKQRDDNLDELKA--EIAAEFID 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ D + E++++ +V + ++ + +RR I + R
Sbjct: 285 EADPENELLIN-------------------------EVHAILNDLVKEEVRRLIADEKIR 319
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IR + S G+LPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E K
Sbjct: 320 PDGRKPDEIRLLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQE-K 378
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FP SVGE G + AP RREIGHG L ERAL ++P + FPYTIR+ S + ES
Sbjct: 379 RFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTIRIVSEVLES 438
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G EDA
Sbjct: 439 NGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMEDAL 492
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +DGITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P L
Sbjct: 493 GDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARKGRLAIMDHMLQTIDHPRAEL 552
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP + IM + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + + +
Sbjct: 553 SAYAPKVEIMHINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIYIGAVDQAMINR 611
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
SK II +T VG IY + ++K I YG FVEI G++ L HIS++S + + K EDV+
Sbjct: 612 SKEIIEAITREAEVGQIY-DAKVKRIEKYGAFVEIFSGKDALLHISQISKDRINKVEDVL 670
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
K+GD + VK+ E++ +G++ S + L+
Sbjct: 671 KIGDTIKVKITEIDKQGRVNASHKVLV 697
>gi|328953964|ref|YP_004371298.1| polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
gi|328454288|gb|AEB10117.1| Polyribonucleotide nucleotidyltransferase [Desulfobacca acetoxidans
DSM 11109]
Length = 711
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 318/757 (42%), Positives = 444/757 (58%), Gaps = 63/757 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ G R + E M QASGAV G+T + + +D E DF PL V+Y E
Sbjct: 15 TFEVEVGGRILAFEIDKMAAQASGAVFARYGDTGVLVTAVASDRLREGIDFLPLTVDYLE 74
Query: 151 RFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
AAGR GGFF+RE GR + E L RLIDRP+RP KGF+HE QI++ VLS D +
Sbjct: 75 MSYAAGRIPGGFFRREIGRPSEKETLTSRLIDRPIRPLFPKGFFHELQIIATVLSVDMEN 134
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD +A+ A A+A+S++P IA VR+G VG + +VNPT ++++S L+L++AGS+D
Sbjct: 135 DPDIIALNGASAALAISDIPFQGPIAAVRMGKVGGELMVNPTISQLKESTLNLIVAGSND 194
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+EG + SEE +++A+ A EM ++ + +++ + +
Sbjct: 195 ALVMVEGGAELASEEEILEAL-------------FTAHAEMQPILRLQEQMRVEAGKTKR 241
Query: 330 HVEEIAGEELVKV-LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
V EI +E +K ++ ++ +A++ E+KV E+G ++T+ L
Sbjct: 242 PVSEIIIDETLKTRVEELSRALILQAIAQAEKKVRHQAMEDG----------LQTVLTTL 291
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E E E E + G + ++ +R ++ R
Sbjct: 292 ESEYEGREKEITG----------------------------FYHDLEKTLVRDLVLNQKR 323
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR IRPIS GLL R HGSALF+RGETQ+LAV TLG QRI+ L + D
Sbjct: 324 RIDGRSYTDIRPISCEVGLLSRTHGSALFSRGETQALAVATLGTVSDEQRIETL-TGDTF 382
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
K F L Y+FPP SVGE + PSRREIGHG LAERAL VLP +FPYTIRV S I
Sbjct: 383 KAFMLHYNFPPYSVGETRMLRGPSRREIGHGALAERALSRVLPQPEEFPYTIRVVSEILS 442
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCGG LA+ DAG+PIK +AGVAMG++ + + ILSDI G ED
Sbjct: 443 SNGSSSMATVCGGSLAMMDAGIPIKAPVAGVAMGLIKEENNIA------ILSDILGDEDH 496
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG GITA QMDIK+GGI +M +AL QA++ R HIL+ M + P
Sbjct: 497 LGDMDFKVAGTAAGITALQMDIKIGGINREIMSQALHQAREARLHILSRMNEAIDQPRTQ 556
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
L ++AP I +M + P+KI +IG GGK VK+I+ TG + ID EDDG + I + D +
Sbjct: 557 LKENAPKIVVMTINPDKIREVIGPGGKTVKNIVAVTGAK-IDIEDDGRIHIASPDALAAN 615
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
++ +I LT P +G +YR ++K I +G FVEI PG +GL HISEL + K D+
Sbjct: 616 QAIRMIQELTQEPEIGQLYRG-KVKKIVDFGAFVEILPGTDGLVHISELDKQRVKKVTDI 674
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRALLP-EADAENP 844
+K GD V VK+++V+ +G++RLSR+A L + D+ NP
Sbjct: 675 LKEGDEVLVKVLDVDRQGKIRLSRKAALDLDQDSVNP 711
>gi|304316856|ref|YP_003852001.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778358|gb|ADL68917.1| polyribonucleotide nucleotidyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 700
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/748 (41%), Positives = 443/748 (59%), Gaps = 59/748 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+ ++ ++++V+TG + + A+G+ V G+T++ + C + P E DFFPL+V+Y+E
Sbjct: 4 NFELDLAGKKLIVQTGKLAQLANGSALVRYGDTVVLVTACASKEPREGVDFFPLSVDYEE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R + G+ GGF KREG+ + +L RLIDRP+RP G+ ++ Q+++ VLS D
Sbjct: 64 RLYSVGKIPGGFIKREGKPTEKAILTSRLIDRPIRPLFPHGYRNDVQVIATVLSVDPDVQ 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ +A+ + +A+++S++P + V V LV KFI+NP E S L L ++G+ DA
Sbjct: 124 PEIVAMIGSSVALSISDIPFNGPTGSVSVALVDGKFIINPDLATREKSDLHLTVSGTKDA 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I+M+E + + EE+++ A+ + +++I + ++ +V+ G PK TI L +
Sbjct: 184 IMMVEAGANEVPEEVMLDAIMYAHEYIKKIVDFIEGIVKEVGLPKAEVTIHEIDSNLERL 243
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
V E A E++ L+ + K R + +EE+VL KDE PD L D
Sbjct: 244 VREFATEKIYNALRTEEKKERNDNIDKVEEEVLEHF-------KDEY-------PDNLAD 289
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
DE V +T + +R+ I E R
Sbjct: 290 IDE------------------------------------VLYTITKEQMRKMITEEKIRV 313
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR D IRPI+ G+LPR HGSA+FTRG+TQ + V TLG Q +D L D+E KR
Sbjct: 314 DGRGLDDIRPITCDIGVLPRTHGSAVFTRGQTQVMTVATLGPLGDIQILDGL-GDEESKR 372
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FPP SVGE + P RREIGHG LAERALEP++PS+ +FPYTIR+ S + SN
Sbjct: 373 YMHHYNFPPFSVGETRPLRGPGRREIGHGALAERALEPMIPSEEEFPYTIRLVSEVLSSN 432
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GS+S ASVCG LAL DAGVPIK +AGVAMG++ + + T IL+DI G ED G
Sbjct: 433 GSTSQASVCGSTLALMDAGVPIKAPVAGVAMGLIKEGE------TVSILTDIQGIEDFLG 486
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ GI ++ AL++A+ GR IL +ML+ P LS
Sbjct: 487 DMDFKVAGTEKGITAIQMDIKIAGIDRDILSAALEKARKGRLFILNKMLETIKEPRKELS 546
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I + V PEKI IIG+GGK + II +TGV+ ID EDDG V I++ DL + EK+
Sbjct: 547 PYAPRIISLNVDPEKIRDIIGAGGKTINKIIADTGVK-IDIEDDGRVFISSTDLKAGEKA 605
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K II +T VG IY ++ IA +G FVEIAPG+EGL HIS+L + K EDVV
Sbjct: 606 KMIIEAITKDVEVGAIYLG-KVTRIASFGAFVEIAPGKEGLVHISKLDKKHVNKVEDVVN 664
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+GD + VK+ E++ +G++ LSR+ LP+
Sbjct: 665 IGDEILVKVTEIDKQGRINLSRKDALPD 692
>gi|363894171|ref|ZP_09321261.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
ACC19a]
gi|361962914|gb|EHL16012.1| polyribonucleotide nucleotidyltransferase [Eubacteriaceae bacterium
ACC19a]
Length = 690
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 296/744 (39%), Positives = 442/744 (59%), Gaps = 59/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + VE G + + A+G+ + +T+I + +DVP + DFFPL+V+++ER
Sbjct: 6 EMELGGRTLSVEIGKIAQMANGSCIIRYADTVILVTATNSDVPRDGIDFFPLSVDFEERL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ GGF KREGR + +L RLIDRP+RP KG+ ++ Q+++ VLS D PD
Sbjct: 66 YSAGKIPGGFVKREGRPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSMDKDANPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ + IA+++S +P + V +GL+ D+FI+NP ++ E S++ L+++G+ DAI+
Sbjct: 126 TIAMIGSSIALSVSSIPFNGPTGSVSIGLIDDQFIINPNLEQREKSEMYLVVSGTKDAIM 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SE++++ A+ + +++I + V+ + + GKPK + P E+ K VE
Sbjct: 186 MVEAGSNEVSEDVMLNAILFAHEEIKKICDFVQKIADEVGKPKDDYYVFKPDEEVEKAVE 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E + ++ ++ +K R+ + V +D E PD L+D D
Sbjct: 246 EYSSNKMKDAIKTVDKQERQDNMEK--------------VKQDAMEHFAEIFPDNLKDVD 291
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E V +T K +R IV+ R D
Sbjct: 292 E------------------------------------VIYNITKKEVRNMIVKDKVRPDN 315
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R + IRPI G+LPR HGSA+FTRG+TQ +++ TL Q ID L+ + E +R+
Sbjct: 316 RLQNEIRPIWCEVGVLPRTHGSAVFTRGQTQVMSITTLAGLSEVQVIDGLDEETE-RRYM 374
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE P RREIGHG LA+RA+EP+LPS+ +FPY IRV S + SNGS
Sbjct: 375 HHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEFPYAIRVVSEVMSSNGS 434
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+S ASVCG L+L DAGVP+K +AG+AMG++ D ++ +ILSDI G ED GDM
Sbjct: 435 TSQASVCGSTLSLLDAGVPMKDMVAGIAMGLIKDEEDV------VILSDIQGMEDFLGDM 488
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA QMDIK+ GI ++++AL QA++GR HIL EM K P LS +
Sbjct: 489 DFKVAGTKKGITAIQMDIKISGIDEDILRRALSQAREGRFHILGEMQKVIKEPREHLSPY 548
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP+I M + P+KI +IGSGGK + II+ETGV+ ID ++DG + I + + K+K+
Sbjct: 549 APMIINMMINPDKIRDVIGSGGKIINKIIDETGVK-IDIDNDGKISILSNNEEMCLKAKS 607
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II + P VG IY+ +I I +G FVEI PG+EGL HIS++ L K ED+ K G
Sbjct: 608 IIEGIVAEPEVGAIYKG-KITKIMTFGAFVEILPGKEGLLHISQMDKKRLEKVEDMFKEG 666
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D+V+VKL E++ +G+L LSR+ LL
Sbjct: 667 DVVEVKLTEIDGQGRLNLSRKVLL 690
>gi|429089307|ref|ZP_19152039.1| Polyribonucleotide nucleotidyltransferase [Cronobacter universalis
NCTC 9529]
gi|426509110|emb|CCK17151.1| Polyribonucleotide nucleotidyltransferase [Cronobacter universalis
NCTC 9529]
Length = 689
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/724 (41%), Positives = 424/724 (58%), Gaps = 55/724 (7%)
Query: 108 MGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREG 167
M RQA+ AV V+ +T ++ +V A DFFPL +NYQER AAGR GGFF+REG
Sbjct: 1 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 60
Query: 168 RTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSE 227
R + E L+ RLIDRPLRP +GF +E Q+++ V+S + PD +A+ A A++LS
Sbjct: 61 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 120
Query: 228 VPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLI 287
+P + I RVG + D++++NPT E++ S+LDL++AG++ A+LM+E + LSE+ ++
Sbjct: 121 IPFNGPIGAARVGYINDQYVLNPTQDELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 180
Query: 288 QAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKN 347
AV G + + + + LV+ GKP+ + L V+ +A L +I +
Sbjct: 181 GAVVFGHEQQQVVIQNINDLVKEAGKPRWDWQPEAANEALNARVKALAESRLSDAYRITD 240
Query: 348 KIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGD 407
K R + +++ V+ L E EGD
Sbjct: 241 KQERYSQIDAIKADVIAALQ---------------------------------AEQAEGD 267
Query: 408 VHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGL 467
E ++ + + +R R++ G R DGR D IR + R G+
Sbjct: 268 A-------------LDENELGDILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGV 314
Query: 468 LPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGR 527
LPR HGSALFTRGETQ+L TLG ++ AQ ID L + RF Y+FPP SVGE G
Sbjct: 315 LPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-RTDRFLFHYNFPPYSVGETGM 373
Query: 528 IGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQD 587
+G+P RREIGHG LA+R + V+P+ + FPYT+RV S ITESNGSSSMASVCG LAL D
Sbjct: 374 VGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMD 433
Query: 588 AGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQ 647
AGVPIK ++AG+AMG+V + + F ++LSDI G ED GDMDFKVAG+ +GITA Q
Sbjct: 434 AGVPIKAAVAGIAMGLVKEGENF------VVLSDILGDEDHLGDMDFKVAGSREGITALQ 487
Query: 648 MDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKIN 707
MDIK+ GIT +M+ AL QAK R HIL M + P +S+ AP IH +K+ P+KI
Sbjct: 488 MDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIK 547
Query: 708 LIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIY 767
+IG GG ++++ EETG I+ EDDGTVKI A D + + I +T VG IY
Sbjct: 548 DVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRIY 606
Query: 768 RNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQ 827
N ++ I +G FV I G+EGL HIS+++ + K D +++G V VK++EV+ +G+
Sbjct: 607 -NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 665
Query: 828 LRLS 831
+RLS
Sbjct: 666 VRLS 669
>gi|419835567|ref|ZP_14359012.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46B1]
gi|421341996|ref|ZP_15792403.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43B1]
gi|421353455|ref|ZP_15803788.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-45]
gi|422306054|ref|ZP_16393240.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1035(8)]
gi|423733930|ref|ZP_17707146.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-41B1]
gi|424008215|ref|ZP_17751165.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-44C1]
gi|259156595|gb|ACV96538.1| polyribonucleotide nucleotidyltransferase [Vibrio fluvialis Ind1]
gi|395945499|gb|EJH56164.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43B1]
gi|395954802|gb|EJH65411.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-45]
gi|408627437|gb|EKL00245.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1035(8)]
gi|408631700|gb|EKL04228.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-41B1]
gi|408858980|gb|EKL98650.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46B1]
gi|408866085|gb|EKM05474.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-44C1]
Length = 708
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 431/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + + +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISSEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|323499449|ref|ZP_08104421.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
21326]
gi|323315505|gb|EGA68544.1| polynucleotide phosphorylase/polyadenylase [Vibrio sinaloensis DSM
21326]
Length = 706
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/759 (40%), Positives = 435/759 (57%), Gaps = 58/759 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + A+A+S +P + I RVG + + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + N + P
Sbjct: 182 GTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVINAINEFKAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + + +V +L
Sbjct: 242 TLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L ED E + ++H +F ++ +RR I+
Sbjct: 283 -LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAATEGT 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENP 844
D + G V VK++E++ +G++RLS + + + D E P
Sbjct: 664 SDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTDEEAP 702
>gi|425074006|ref|ZP_18477111.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW4]
gi|404594417|gb|EKA94999.1| polyribonucleotide nucleotidyltransferase [Proteus mirabilis WGLW4]
Length = 709
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 312/747 (41%), Positives = 437/747 (58%), Gaps = 60/747 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P K +G + +ETG M RQA+ AV V T ++ +V E DFFPL VN
Sbjct: 3 NPTVRKFQYGQHTVTLETGMMARQATAAVMVDMDGTAVFVTVVAKKKVKEGQDFFPLTVN 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAGR G FF+REGR + E L+ RLIDRPLRP +GF +E Q+++ V+S +
Sbjct: 63 YQERSYAAGRIPGSFFRREGRPGEGETLIARLIDRPLRPLFPEGFLNEIQVVATVVSVNP 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A A++LS VP + I G RVG + ++++NPT E++ S+LDL++AG+
Sbjct: 123 QVNPDIVAMIGASAALSLSGVPFNGPIGGARVGFIDGQYVLNPTVDELKISKLDLVVAGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE- 326
A+LM+E D LSEE ++ AV G + + + + ALV GK K D P +
Sbjct: 183 AGAVLMVESEADLLSEEQMLGAVVFGHEQQQVVIENINALVAEVGKEKW-DWAPEPINQS 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L+ + ++A + +I K R + + ++ ++V++ L
Sbjct: 242 LHDRIAQLAQTRIGDAYRITEKQERYEQIDAIRDEVISTL-------------------- 281
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
L EDE DE GE+ E +F + K +R R++ G
Sbjct: 282 LAEDESLDE-----GEIIE------------------------IFSGLEKKIVRARVLAG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R + R GLLPR HGSALFTRGETQ+L TLG + AQ ID++ +
Sbjct: 313 EPRIDGREKDMVRALDIRTGLLPRTHGSALFTRGETQALVTATLGTARDAQTIDDIMGE- 371
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
F L Y+FPP SVGE G +G+P RREIGHG LA+R + V+P+ +FPYT+RV S I
Sbjct: 372 HTDTFLLHYNFPPYSVGETGIMGSPKRREIGHGRLAKRGVLAVMPTIEEFPYTVRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + + F ++LSDI G E
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKESVAGIAMGLVKEGENF------VVLSDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+ +G++A QMDIK+ GIT +M+ AL QAK R HIL M P
Sbjct: 486 DHLGDMDFKVAGSRNGVSALQMDIKIEGITREIMQVALNQAKSARLHILGVMESAISQPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S+ AP IH +K+ +KI +IG GG ++++ EETG I+ EDDGTVKI A
Sbjct: 546 AEISEFAPRIHTIKINADKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATSGEQ 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++ A I +T VG IY N ++ I +G FV I G+EGL HIS+++ + K
Sbjct: 605 AKQAIARIEEITAEVEVGRIY-NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVS 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D + +G V VK++E++ +G++RLS +
Sbjct: 664 DYLTMGQEVPVKVLEIDRQGRIRLSMK 690
>gi|429736062|ref|ZP_19269980.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156182|gb|EKX98819.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 689
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/744 (40%), Positives = 438/744 (58%), Gaps = 59/744 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I G R++ VE G M +QA+GAV V G+T++ + + P E DFFPL V+Y+E+
Sbjct: 5 EIELGGRKLTVEHGKMAKQANGAVLVRYGDTVVLVTATASSAPREGVDFFPLTVDYEEKM 64
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR VL RLIDRP+RP +GF ++ QI++ VL + + P+
Sbjct: 65 YAAGKIPGGFIKREGRPSSDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLCVEQDNPPE 124
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A A+ +S++P IAGVRVG V F++NPT + E S+L+L +AGS DA++
Sbjct: 125 IAAMLGASCALTVSDIPFMGPIAGVRVGYVDGSFVINPTEAQREVSELNLTVAGSYDAVM 184
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + LSEE+++ A+ G +R + + CGK K I EL V
Sbjct: 185 MVEAGANELSEEIVLDAILFGHAEIRRLVEFQNNIQNACGKEKQTPAIFAVSEELESKVR 244
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
A E L + +K+ R +S+++ ET+ +E+
Sbjct: 245 AYAEERLDAATRNSDKLMRDADISAIK---------------------AETVEHFIEE-- 281
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
P + K + +++ +V +T + +R DG
Sbjct: 282 ------------------YPDAAKEISQILYKIEKGIVRHMITHEKIR---------PDG 314
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D +RP+S G+LPR HGS LFTRG+TQ L V TLG Q ID L + K +
Sbjct: 315 RALDEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGL-GPETTKHYL 373
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+FP SVGE + +P RREIGHG LAERAL P++PS DFPYTIR+ S I ESNGS
Sbjct: 374 HHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDFPYTIRLVSEILESNGS 433
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSM SVCG L+L AGVPIK ++GVAMG+V D D++ IL+DI G EDA GDM
Sbjct: 434 SSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYS------ILTDIQGMEDALGDM 487
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG GITA QMDIK+ GIT ++ AL QAK GR IL +ML+C P+ LS +
Sbjct: 488 DFKVAGTSKGITAIQMDIKIAGITRDILASALAQAKQGRAFILEKMLECIAQPAAELSPY 547
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + ++ + EKI +IG+GGK V+ II+ETGV+ +D +DG + IT+ ++ ++++++
Sbjct: 548 APRVEVITIDIEKIRDVIGTGGKVVRKIIDETGVD-VDIHEDGNIFITSPNMEAMDRARK 606
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
+I ++ VG++Y + +G FVE+ PG+EGLCHIS+L+ + + EDVVK+G
Sbjct: 607 MIEDIVREVEVGEVYTG-RVTRFLKFGAFVELLPGKEGLCHISQLAKHRVESVEDVVKIG 665
Query: 813 DLVDVKLIEVNDKGQLRLSRRALL 836
D ++VK+IE+++KG++ +S +ALL
Sbjct: 666 DQLEVKVIEIDEKGRINVSHKALL 689
>gi|229104369|ref|ZP_04235038.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
gi|228679067|gb|EEL33275.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-28]
Length = 712
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 448/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K+ + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKAKLEIKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID + DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIKQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
Length = 715
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 310/741 (41%), Positives = 436/741 (58%), Gaps = 63/741 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V D++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D LSEE+++ AV G + ++ + + LV GKP+ D P E L V EI
Sbjct: 193 SEADQLSEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEW-DWQPAPKDEALIARVTEI 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A EL+ QI++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 252 AQPELLAAYQIRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 306
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 307 -------------------------------------------LEAKIVRGQILNGEPRI 323
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +R
Sbjct: 324 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ER 382
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS +F Y+IRV S ITESN
Sbjct: 383 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITESN 442
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 443 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 496
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS
Sbjct: 497 DMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANTQLS 556
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++
Sbjct: 557 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEA 615
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 616 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 674
Query: 811 VGDLVDVKLIEVNDKGQLRLS 831
G V VK+I+ ++KG++RLS
Sbjct: 675 EGQQVKVKVIQTDEKGRVRLS 695
>gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase [Herminiimonas arsenicoxydans]
gi|187610275|sp|A4G647.1|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Herminiimonas arsenicoxydans]
Length = 710
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 310/761 (40%), Positives = 445/761 (58%), Gaps = 62/761 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G + +ETG + RQASGAV V+ +T++ +V DFFPL V+Y
Sbjct: 5 VTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLTVDYV 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREGR + E L RLIDRP+RP +G+ +E QI+ V+S +
Sbjct: 65 EKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+++S +P + + RVG + ++I+NPT +++ SQ+DL++AG++
Sbjct: 125 DPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVAGTEA 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE--- 326
A+LM+E LSEE+++ AV G D ++ + + + LV GKP+ ++ PP
Sbjct: 185 AVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPE----VQWAPPAKNE 240
Query: 327 -LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L V A E+L Q K+K R L +V N V+ + T
Sbjct: 241 ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEV------NAEVAAEATS------- 287
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
V G P + + +LF ++ +K +R +I++
Sbjct: 288 -------------VGGAA--------PDTSEVGNILF----------DLEAKIVRSQILD 316
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR +RPI+ R G+LPR HGSALFTRGETQ+L + TLG + Q+ID L +
Sbjct: 317 GEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDALMGE 376
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
RF L Y+ PP + GE GR+G P RREIGHG LA+RAL LP+ DF Y++R+ S
Sbjct: 377 YS-DRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAALPAPEDFSYSVRLVSE 435
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCGGCLAL DAGVP++ +AG+AMG++ D +F +LSDI G
Sbjct: 436 ITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKFA------VLSDILGD 489
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP- 684
ED GDMDFKVAG +GITA QMDIK+ GIT +M+ AL QAK+GR HIL EM K P
Sbjct: 490 EDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILGEMEKAVPSG 549
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ LS AP + +K+ PEKI +IG GG ++++ EETG + ID D+G V I + D
Sbjct: 550 TTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQ-IDISDEGVVTIASVDA 608
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++ +++K I LT VG +Y +K + +G V++ PG++GL HIS++++ +
Sbjct: 609 AAGQEAKRRIEELTASVEVGKVYEGTVLK-LLDFGAIVQVMPGKDGLLHISQIANERVNA 667
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845
D +K G V VK++E +D+G+L+LS +A L E + E P
Sbjct: 668 VADYLKEGQQVRVKVLETDDRGRLKLSMKAALAEDNPEAAP 708
>gi|317058280|ref|ZP_07922765.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_5R]
gi|313683956|gb|EFS20791.1| polyribonucleotide nucleotidyltransferase [Fusobacterium sp.
3_1_5R]
Length = 707
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/745 (40%), Positives = 438/745 (58%), Gaps = 51/745 (6%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
++++ R + V TG + RQ+ GAV + G+T++ ++V + P + +DFFPL V+Y E
Sbjct: 6 TLEMELAGRTLKVSTGKIARQSCGAVMIQYGDTVLLSTVNRSKEPRKGADFFPLTVDYIE 65
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+F AAG+ GGF KRE R LV RLIDRP+RP +GF ++ I++ V S+D +
Sbjct: 66 KFYAAGKFPGGFNKRESRPSTDATLVARLIDRPIRPMFPEGFTYDVHIVNTVFSFDEQNT 125
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD L + + +A+++S++P +AGV VG + +FI+NP+ +++E S LDL +AG+ DA
Sbjct: 126 PDYLGIIGSSLALSISDIPFLGPVAGVTVGYIDGEFILNPSPEQLEKSLLDLSVAGTKDA 185
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
+ M+E L EE +++A+ D +++I + V++CGK K+ + +
Sbjct: 186 VNMVEAGAKELDEETMLKAILFAHDNIKKICAFQEEFVKLCGKEKITFEKEEVDTVISSF 245
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+EE E L + K R +A+ LEE++L+ Y
Sbjct: 246 IEENGHERLQAAVLTLGKKNREEAVDGLEEELLSAFIAKQY------------------- 286
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
P + + K + ++ K +R I+ R
Sbjct: 287 ---------------------PDVAEEEIPEEPILAFKKYYHDLMKKLVREAILYKKHRV 325
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRP+ ++ +LP HGSALFTRGETQSLA TLG K Q +DNLE + K+
Sbjct: 326 DGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLATATLGTKDDEQLVDNLEK-EYYKK 384
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
FYL Y+FPP SVGE GR+GAP RRE+GHG+LAERAL V+P++ +FPYTIRV S ITESN
Sbjct: 385 FYLHYNFPPYSVGETGRMGAPGRRELGHGSLAERALRYVIPTEEEFPYTIRVVSDITESN 444
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSS AS+CGG LAL AGVPIK +AG+AMG++ + +EF +L+DI G ED G
Sbjct: 445 GSSSQASICGGSLALMSAGVPIKEHVAGIAMGLIKEGEEF------TVLTDIMGLEDHLG 498
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG + GITA QMDIK+ GIT +M+ AL QA R+ IL M P++ L
Sbjct: 499 DMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHVARQQILEVMNTAISSPAD-LK 557
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ P I + + +KI ++IG GGK +K IIEETG ID DDG V I +KDL LE +
Sbjct: 558 PNVPRIQQITIPKDKIAILIGPGGKNIKGIIEETG-STIDITDDGKVSIFSKDLEVLENT 616
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+++N + ++Y ++ I +G F+EI PG+EGL HISE+S +A EDV+K
Sbjct: 617 LRLVNNYVKDVELNEVYEG-KVVGIQKFGAFMEILPGKEGLLHISEISKERVANVEDVIK 675
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRAL 835
+GD+ VK+I + D G++ LS++ L
Sbjct: 676 MGDVFKVKVISL-DNGKIALSKKKL 699
>gi|258516323|ref|YP_003192545.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
acetoxidans DSM 771]
gi|257780028|gb|ACV63922.1| Polyribonucleotide nucleotidyltransferase [Desulfotomaculum
acetoxidans DSM 771]
Length = 746
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 312/761 (40%), Positives = 448/761 (58%), Gaps = 65/761 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + +ETG + +QA GAV V G+T++ ++ ++ E DFFPL V Y+ER
Sbjct: 7 ELNIGGRVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTVEYEERL 66
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
A GR GGF KRE R ++ +L CRLIDR +RP KGF +ETQI++ ++S D H P+
Sbjct: 67 YAVGRIPGGFIKREARPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVDQDHAPE 126
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A+ +S+ P + I GV VG V + I+NP + S L L++AG+ DA++
Sbjct: 127 MAAMIGTSAALTISDAPFNGPIGGVIVGRVDGELIINPNAAQSAKSDLHLVVAGTKDAVM 186
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEV-----KALVEMCGKPKMLDTIKLPPPEL 327
M+E + ++EE+++ A+ G D +R+I + + +A+ + KPK+ + PE
Sbjct: 187 MVEAGANEVTEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQLAKPKL----EFAAPEE 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ + E GE ++ + K+ RK + EE++ E +
Sbjct: 243 NQELIEAIGE----TMEAEIKMAVRKCV---EERMDKKTREAFF---------------- 279
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
DE +D V+ E P S D+K +F+++ K +R+ IV+
Sbjct: 280 --DELKDRLVLEFAE--------------QYPEQVS--DIKDLFRKIEKKLVRQLIVKDR 321
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +RPIS G+LPR HGS LFTRG+TQ L+V+TLG Q +D L ++ E
Sbjct: 322 IRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILSVVTLGAISEEQILDGLGTE-E 380
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KR+ Y+FPP S GE + +P RREIGHG LA RALEP++P + +FPYTIRV S
Sbjct: 381 SKRYMHHYNFPPFSTGETKMMRSPGRREIGHGALAGRALEPMIPGEEEFPYTIRVVSEAL 440
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGS+SM SVCG LAL DAGVPIK ++GVAMG++ + DE ++L+DI G ED
Sbjct: 441 ESNGSTSMGSVCGSTLALMDAGVPIKAPVSGVAMGLIKEDDEI------VVLTDIQGLED 494
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG GI A QMDIKV G+T +++KALQQA GR HI+ +M++ P
Sbjct: 495 ALGDMDFKVAGTAKGINALQMDIKVAGVTQEILEKALQQAYTGRMHIMGKMMEVISAPRQ 554
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LSK+AP+I + P+KI +IG GGK +K I+EETG ID EDDG V + A D +
Sbjct: 555 ELSKYAPMIIHTTINPDKIRDVIGPGGKTIKKIVEETGAN-IDIEDDGRVFVAAVDREAG 613
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIA------PGREGLCHISELSSNW 801
+K+ +II LT +G IY +K I +G FVEI PG+EGL HIS+L+
Sbjct: 614 QKALSIIEKLTQEVVIGQIYLGRVVK-IMDFGCFVEIIPGVLGLPGKEGLVHISQLAHQR 672
Query: 802 LAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
+ K EDVV GD++ VK I ++ G+L+LS++ +P+ E
Sbjct: 673 VNKVEDVVAEGDMILVKAIGNDNMGRLKLSKKEAMPQEGKE 713
>gi|296125683|ref|YP_003632935.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
DSM 12563]
gi|296017499|gb|ADG70736.1| polyribonucleotide nucleotidyltransferase [Brachyspira murdochii
DSM 12563]
Length = 716
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 315/751 (41%), Positives = 444/751 (59%), Gaps = 67/751 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+VK F ++++ETG + +QA G+VT+ G T I +V A P+ SDFFPL VNY
Sbjct: 2 VTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYN 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ A G+ GGFFKRE + +D E+L+ R+IDRPLRP +GF +E QI+ VLS D
Sbjct: 62 EKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDM 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
DALA+ A+ A+ +S +P +A VR+G ++I+NP E+ S+LD+++AGS D
Sbjct: 122 PTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELPSSELDIIVAGSKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AILMIEG +SEE+ I A+++ +++ + + +CG K+ + +L K
Sbjct: 182 AILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEYDADLVK 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRK----ALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
V E ++ +K R + A + +EE + T + +S + GI TI
Sbjct: 242 TVTEYGRAKIEAANYNPDKTKRNESMDNAFNEIEEYIKTTTDDEKLIS--QVKGICHTI- 298
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
+EE+V R IVE
Sbjct: 299 --------EEEIV-----------------------------------------REAIVE 309
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
R DGR D IRPIS+ L+PR HGSALFTRG+TQ L+++TLG ++ AQ +D++
Sbjct: 310 KSMRPDGRALDEIRPISTMINLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGK 369
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
E K F L Y+FPP SVGEVGR GAP RREIGHG LAER+ VLPS FPYT+RV +
Sbjct: 370 -ENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPSKEKFPYTVRVVAE 428
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
I ESNGSSSMA++C ++L AGVP+ S+AG+AMG+ D + IL+DI G
Sbjct: 429 ILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYK------ILTDIQGV 482
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG GITAFQ+DIK+ GI+ ++K+AL+QAK R IL +++ +
Sbjct: 483 EDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFIL-DIIDSTISN 541
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S AP M+V PEKI ++IG GGK +KSIIEETG + +D +D G V I A D
Sbjct: 542 AGEISDFAPKYKTMEVNPEKIRVLIGPGGKNIKSIIEETGSD-VDIQDSGIVNIFAPDTP 600
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+L+K+ +I++ P +G++Y +K I +G F+EI PG EGLCHISEL+ +
Sbjct: 601 TLDKTIKLINSYVKDPEIGEVYDGV-VKDIKDFGAFIEILPGVEGLCHISELAYKHVMNV 659
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
E+V+K+GD V VK+I++ G+ LSRRALL
Sbjct: 660 EEVLKIGDEVKVKIIDIKG-GKYSLSRRALL 689
>gi|388569739|ref|ZP_10156126.1| polynucleotide phosphorylase/polyadenylase [Hydrogenophaga sp. PBC]
gi|388263029|gb|EIK88632.1| polynucleotide phosphorylase/polyadenylase [Hydrogenophaga sp. PBC]
Length = 743
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/752 (40%), Positives = 429/752 (57%), Gaps = 58/752 (7%)
Query: 85 SFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPL 144
S V+ +G + +ETG + RQ+SGAV + T++ +V DFFPL
Sbjct: 2 SMFNKVTKTFQWGQHTVTMETGEIARQSSGAVLLDMDGTVVLATVVAKSEAKAGQDFFPL 61
Query: 145 NVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLS 204
V+Y E+ AAG+ G FFKREGR + E L RLIDRP+RP +GF++E Q++ LS
Sbjct: 62 TVDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVIHTLS 121
Query: 205 YDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLL 264
+ D A+ A A+++S +P + I RVG V ++++NP E + SQ+DL++
Sbjct: 122 LNPEVDADIAAMIATSAALSISGIPFNGPIGAARVGYVNGQYVLNPGQTERKGSQMDLVV 181
Query: 265 AGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP 324
AG+ A+LM+E LSEE+++ V G + N + LV GKP+
Sbjct: 182 AGTQAAVLMVESEALQLSEEVMLGGVVFGHEQANIAINAINELVRDAGKPEWQWQAPARD 241
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
L VEE+ G++L QI+NK R +A V++ L
Sbjct: 242 EALIAKVEELGGDKLRAAYQIRNKQARTQACREAYAAVMSGL------------------ 283
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
K+ + F V V+ + ++ + +R +I+
Sbjct: 284 -------------------------------KAAGIEFDSVKVEGLLFDIEAGIVRGQIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG + AQRID L
Sbjct: 313 AGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTDRDAQRIDALAG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ E RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LP+ DFPYT+RV S
Sbjct: 373 EFE-DRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPTKEDFPYTMRVVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ D + F +L+DI G
Sbjct: 432 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKDANRFA------VLTDILG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG +GITA QMDIK+ GIT +M+ AL QAK+ R HIL +M +
Sbjct: 486 DEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQEAMGE 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+S AP ++ MK+ PEKI +IG GG ++++ EETG + I+ E+DGT+ I A D
Sbjct: 546 AKTEISSFAPKLYTMKINPEKIRDVIGKGGAVIRALTEETGCQ-INIEEDGTITIAATDG 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+ +++K I +T VG +Y I I +G V + PG++GL HIS+++ + K
Sbjct: 605 AKADEAKRRIGEITAEVEVGKVYEG-PITKILDFGALVNLLPGKDGLLHISQIAHERVEK 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
D ++ G +V VK++E ++KG+++LS +ALL
Sbjct: 664 VTDYLQEGQIVKVKVLETDEKGRVKLSMKALL 695
>gi|357417776|ref|YP_004930796.1| polynucleotide phosphorylase/polyadenylase [Pseudoxanthomonas
spadix BD-a59]
gi|355335354|gb|AER56755.1| polynucleotide phosphorylase/polyadenylase [Pseudoxanthomonas
spadix BD-a59]
Length = 702
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/752 (40%), Positives = 445/752 (59%), Gaps = 59/752 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G Q+ +ETG + RQA GAV V +T++ S A E DFFPL V+YQERF A
Sbjct: 10 YGKHQVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKKAREGQDFFPLTVDYQERFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRPLRP + F +E Q+++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPLRPLFPEEFRNEVQVIATVMSLNPDIDGDIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A AVAL+ P S I +VG + ++++NPT E+++S+L+L++AG+ +A+LM+E
Sbjct: 130 LIGASAAVALTGAPFSGPIGAAKVGYINGQYVLNPTVSELKESRLELVVAGTSNAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSEE+++ AV G ++++ + + LV G + L +EE
Sbjct: 190 SEAAELSEEVMLGAVMFGHREMQKVIHVINELVVEAGTQSWNWSAPARNQALVSALEEAV 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
G L + Q+++K+ RR A+++++ VL L+ G V D
Sbjct: 250 GNRLAEAFQVRDKLQRRDAIAAIKSDVLESLA--GRVQADG------------------- 288
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+S ++ F E+ + LR ++ R DGR
Sbjct: 289 --------------------------WSTAELSKEFSELEYQTLRGAVLSTKVRIDGRAL 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D +RPIS++ +LPR HGSALFTRGETQ++ V TLG + Q ID + S + F Y
Sbjct: 323 DTVRPISAKVSVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAV-SGEYKDNFLFHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE GR+ P RREIGHG LA+R + V+P+ +FPYTIRV S ITESNGSSSM
Sbjct: 382 NFPPYSVGEAGRMMGPKRREIGHGRLAKRGVLAVMPTMEEFPYTIRVVSEITESNGSSSM 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCG L+L DAGVPIK +AG+AMG+V + D+F ++LSDI G ED GDMDFK
Sbjct: 442 ASVCGSSLSLMDAGVPIKAPVAGIAMGLVKEGDDF------VVLSDILGDEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +G++A QMDIK+ GIT +MK+AL QAK GR HIL EM P LS+ AP
Sbjct: 496 VAGTSNGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMAHALTTPRQELSEFAPR 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +++ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + ++ + +KA I
Sbjct: 556 LITIRIHPDKIREVIGKGGAVIQAITKETGTQ-IDIQDDGTITIASVNGAAGQAAKARIE 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+T G IY ++ + +G FV IAPG++GL H+S++S + K D +K GDL+
Sbjct: 615 QITSDIEPGRIYEG-KVAKLMDFGAFVTIAPGKDGLVHVSQISVERVEKVSDKLKEGDLI 673
Query: 816 DVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
VK++EV+ +G++RLS +A+ D E PV+
Sbjct: 674 RVKVLEVDKQGRIRLSMKAV---EDGEGMPVE 702
>gi|229019001|ref|ZP_04175843.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|229025246|ref|ZP_04181668.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|423389886|ref|ZP_17367112.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
gi|423418286|ref|ZP_17395375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|228736074|gb|EEL86647.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1272]
gi|228742329|gb|EEL92487.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH1273]
gi|401106559|gb|EJQ14520.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG3X2-1]
gi|401641977|gb|EJS59694.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG1X1-3]
Length = 712
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/743 (40%), Positives = 445/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMFGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K+ + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKLAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|429098486|ref|ZP_19160592.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
582]
gi|426284826|emb|CCJ86705.1| Polyribonucleotide nucleotidyltransferase [Cronobacter dublinensis
582]
Length = 690
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/724 (41%), Positives = 425/724 (58%), Gaps = 55/724 (7%)
Query: 108 MGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREG 167
M RQA+ AV V+ +T ++ +V A DFFPL +NYQER AAGR GGFF+REG
Sbjct: 2 MARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLTINYQERTYAAGRIPGGFFRREG 61
Query: 168 RTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSE 227
R + E L+ RLIDRPLRP +GF +E Q+++ V+S + PD +A+ A A++LS
Sbjct: 62 RPSEGETLIARLIDRPLRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 121
Query: 228 VPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLI 287
+P + I RVG + D++++NPT +E++ S+LDL++AG++ A+LM+E + LSE+ ++
Sbjct: 122 IPFNGPIGSARVGYINDQYVLNPTQEELKSSKLDLVVAGTESAVLMVESEAELLSEDQML 181
Query: 288 QAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKN 347
AV G + + + + LV+ GKP+ + L V+ +A L +I +
Sbjct: 182 GAVVFGHEQQQIVIQNINDLVKEAGKPRWDWQPEAANETLNARVKALAESRLSDAYRITD 241
Query: 348 KIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGD 407
K R + +++ V+ L E EGD
Sbjct: 242 KQERYSQIDAIKADVIAALQ---------------------------------AEQAEGD 268
Query: 408 VHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGL 467
E ++ + + +R R++ G R DGR D IR + R G+
Sbjct: 269 A-------------LDENELGDILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGV 315
Query: 468 LPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGR 527
LPR HGSALFTRGETQ+L TLG ++ AQ ID L + RF Y+FPP SVGE G
Sbjct: 316 LPRTHGSALFTRGETQALVTATLGTERDAQNIDELMGE-RTDRFLFHYNFPPYSVGETGM 374
Query: 528 IGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQD 587
+G+P RREIGHG LA+R + V+P+ + FPYT+RV S ITESNGSSSMASVCG LAL D
Sbjct: 375 VGSPKRREIGHGRLAKRGVLAVMPAADRFPYTVRVVSEITESNGSSSMASVCGASLALMD 434
Query: 588 AGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQ 647
AGVPIK ++AG+AMG+V + + F ++LSDI G ED GDMDFKVAG+ +GITA Q
Sbjct: 435 AGVPIKAAVAGIAMGLVKEGENF------VVLSDILGDEDHLGDMDFKVAGSREGITALQ 488
Query: 648 MDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKIN 707
MDIK+ GIT +M+ AL QAK R HIL M + P +S+ AP IH +K+ P+KI
Sbjct: 489 MDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKISPDKIK 548
Query: 708 LIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIY 767
+IG GG ++++ EETG I+ EDDGTVKI A D + + I +T VG IY
Sbjct: 549 DVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRIY 607
Query: 768 RNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQ 827
N ++ I +G FV I G+EGL HIS+++ + K D +++G V VK++EV+ +G+
Sbjct: 608 -NGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 666
Query: 828 LRLS 831
+RLS
Sbjct: 667 VRLS 670
>gi|225865786|ref|YP_002751164.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
gi|254782705|sp|C1EP29.1|PNP_BACC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|225790852|gb|ACO31069.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB102]
Length = 712
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGTTVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|42782895|ref|NP_980142.1| polynucleotide phosphorylase [Bacillus cereus ATCC 10987]
gi|402556072|ref|YP_006597343.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
gi|81409473|sp|Q732R5.1|PNP_BACC1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|42738822|gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
10987]
gi|401797282|gb|AFQ11141.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus FRI-35]
Length = 712
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQSVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|47569084|ref|ZP_00239773.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49478386|ref|YP_037868.1| polynucleotide phosphorylase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141682|ref|YP_085148.1| polynucleotide phosphorylase [Bacillus cereus E33L]
gi|118479027|ref|YP_896178.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
str. Al Hakam]
gi|165872621|ref|ZP_02217252.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167635853|ref|ZP_02394162.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|167639866|ref|ZP_02398135.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|170687834|ref|ZP_02879048.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|177652128|ref|ZP_02934674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190568447|ref|ZP_03021354.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196042164|ref|ZP_03109447.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|196044582|ref|ZP_03111817.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|227813285|ref|YP_002813294.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CDC 684]
gi|228928856|ref|ZP_04091888.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935122|ref|ZP_04097949.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228986950|ref|ZP_04147076.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229092848|ref|ZP_04223982.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|229123320|ref|ZP_04252524.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|229157384|ref|ZP_04285462.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|229186044|ref|ZP_04313214.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|254683486|ref|ZP_05147346.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
CNEVA-9066]
gi|254735845|ref|ZP_05193551.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Western North America USA6153]
gi|254739629|ref|ZP_05197323.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Kruger B]
gi|254755998|ref|ZP_05208029.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Vollum]
gi|386737630|ref|YP_006210811.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|421507348|ref|ZP_15954268.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|421639561|ref|ZP_16080152.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
gi|423550444|ref|ZP_17526771.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|81395117|sp|Q6HF08.1|PNP_BACHK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81686592|sp|Q636L9.1|PNP_BACCZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470934|sp|A0RHH8.1|PNP_BACAH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782704|sp|C3L7C0.1|PNP_BACAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|47554246|gb|EAL12608.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus G9241]
gi|49329942|gb|AAT60588.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|51975151|gb|AAU16701.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus E33L]
gi|118418252|gb|ABK86671.1| polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
str. Al Hakam]
gi|164711653|gb|EDR17199.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0488]
gi|167512267|gb|EDR87644.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0193]
gi|167528810|gb|EDR91568.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0442]
gi|170668150|gb|EDT18899.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0465]
gi|172082497|gb|EDT67562.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0174]
gi|190560451|gb|EDV14429.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196024617|gb|EDX63289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus 03BB108]
gi|196027016|gb|EDX65640.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
NVH0597-99]
gi|227006240|gb|ACP15983.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
CDC 684]
gi|228597463|gb|EEK55113.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus BGSC
6E1]
gi|228626111|gb|EEK82860.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC
4342]
gi|228660096|gb|EEL15732.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus 95/8201]
gi|228690470|gb|EEL44253.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
Rock3-42]
gi|228772728|gb|EEM21168.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228824487|gb|EEM70292.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830663|gb|EEM76268.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|384387482|gb|AFH85143.1| Polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
H9401]
gi|401190060|gb|EJQ97110.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ISP3191]
gi|401822482|gb|EJT21632.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
UR-1]
gi|403393226|gb|EJY90471.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
BF1]
Length = 712
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
Length = 709
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/756 (40%), Positives = 438/756 (57%), Gaps = 59/756 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ I +G + +ETG + RQA AV V+ G+T++ +V DFFPL V+Y
Sbjct: 5 VTKSIQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKSEVKAGQDFFPLTVDYM 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAG+ GGFFKREGR + E L RLIDRPLRP + FY+E Q+++ VLS D
Sbjct: 65 EKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
D A+ A A++LS +P + RVG + D++++NPT ++E+++LDL++A ++
Sbjct: 125 DADIPAIIGASAAMSLSGIPFFGPLGAARVGYINDEYVLNPTKAQLEETELDLVVAATET 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E LSEE+++ AV G + ++ + + L GK P L
Sbjct: 185 AVMMVESEAKELSEEVMLGAVVFGHEQMQAVIKMIAELAAEAGKDAWDWVAPEPDTALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E+A ++ QIK K R LS + +VL L + E
Sbjct: 245 KVAELAAADINAAFQIKAKGARSAKLSEITSRVLGEL--------------------ITE 284
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ E + GE LF+ + +K +R +I+ G R
Sbjct: 285 ETSTAEANKIKGE------------------LFN----------LEAKTVRSQILNGEPR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPIS R G+LPR HGSALFTRGETQ+L V TLG + Q ID L+ + +
Sbjct: 317 IDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQVIDALQGEFK-D 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GR+G P RREIGHG LA+R+L LP DF YT+RV S ITES
Sbjct: 376 RFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRSLIAALPDQADFDYTMRVVSEITES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ + + +L+DI G ED
Sbjct: 436 NGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEGNRVA------VLTDILGDEDHL 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG EDGITA QMDIK+ GIT +M+ AL QAK+GR HIL M + +
Sbjct: 490 GDMDFKVAGTEDGITALQMDIKITGITSQIMQVALAQAKEGRAHILGIMKAAMSSANTEM 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP I +MK+ PEKI +IG GG ++++ EETG +ID +DGTVKI +
Sbjct: 550 SAFAPRIIVMKINPEKIRDVIGKGGAVIRALTEETGT-SIDITEDGTVKIACTSSEQGAE 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ I+ +T +G++Y +K + +G V + PG++GL HIS+++ + D +
Sbjct: 609 AQRRIAEITAEVEIGNVYEGTVLK-LLDFGAIVSLIPGKDGLLHISQIAHQRVNAVSDFL 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL--PEADAEN 843
K GD+V VK++E ++KG++RLS +AL+ P A+A++
Sbjct: 668 KEGDIVKVKVVEADEKGRVRLSMKALIEAPAAEAKS 703
>gi|229512909|ref|ZP_04402376.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
gi|229350158|gb|EEO15111.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TMA 21]
Length = 708
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 431/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAAQAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|258620317|ref|ZP_05715355.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|424809621|ref|ZP_18234998.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus SX-4]
gi|258587196|gb|EEW11907.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM573]
gi|342323109|gb|EGU18895.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus SX-4]
Length = 709
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/763 (40%), Positives = 434/763 (56%), Gaps = 61/763 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + N + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + + +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYARIHEISAEVSAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDAKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ +KI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLP---EADAENPP 845
D + G V VK++E++ +G++RLS + + EA AE P
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETPVEAAAEVAP 706
>gi|407794964|ref|ZP_11141982.1| polynucleotide phosphorylase/polyadenylase [Idiomarina xiamenensis
10-D-4]
gi|407210041|gb|EKE79923.1| polynucleotide phosphorylase/polyadenylase [Idiomarina xiamenensis
10-D-4]
Length = 714
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 316/774 (40%), Positives = 448/774 (57%), Gaps = 67/774 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P++ K +G + +ETG M RQASGAV + +T + +V E +FFPL VN
Sbjct: 2 NPITKKFQYGQHTVTLETGVMARQASGAVLASMDDTTVLVTVVAKKEAKEGQNFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR ++E L RLIDRP+RP +GF +E Q+++ V+S +
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSENETLTARLIDRPIRPLFPEGFMNEVQVIATVVSVNP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +A+ A+A+S P + I RVG++ +++++NPT E+++S LDL++AG+
Sbjct: 122 QIAPDIVAMIGTSAALAISGCPFNGPIGVARVGVLNNEYVLNPTQDELKESSLDLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E LSE++++ AV G +A + + + G K L
Sbjct: 182 EGAVLMVESEAQLLSEDVMLGAVVYGHEAQQSVITAINEFAAEVGNEKWEWQAPASNDAL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V+ +A + + + +I K R + L L++ V+ L E
Sbjct: 242 HGKVKALAEDGIGEAYRITEKAKRYEQLGQLKDSVVAKLVE------------------- 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
ED+ D GEV E +F + +R RI+ G
Sbjct: 283 -EDDSIDS-----GEVGE------------------------IFHSIEKDVVRSRIIAGE 312
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D +R IS G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID++ D +
Sbjct: 313 KRIDGRDPDMVRAISVATGVLPRTHGSSLFTRGETQALVTATLGTERDAQMIDDIIGD-K 371
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+FPP VGE G +G+P RREIGHG LA+R ++ V+P + FPYTIRV S IT
Sbjct: 372 TNRFMLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVQAVMPDHDAFPYTIRVVSEIT 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G ED
Sbjct: 432 ESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEDDKF------VVLSDILGDED 485
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAGN DGITA QMDIK+ GIT +M++AL QAK R HIL M +
Sbjct: 486 HLGDMDFKVAGNNDGITALQMDIKIDGITREIMEQALAQAKAARLHILTVMDEAIGGHRT 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP H MK+ +KI +IG GG ++ + E T I+ +DDGT+KI A D +
Sbjct: 546 ELSAYAPRYHTMKINSDKIKDVIGKGGAVIRELTESTNTN-IEIQDDGTIKIAATDQADA 604
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + A I LT VG IY+ ++ I +G FV + PG++GL HIS+++ + +
Sbjct: 605 DAAIARIEQLTADVEVGRIYQG-KVARIVDFGAFVTVLPGKDGLVHISQIAEERVNDVNE 663
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASD 861
+KVG V VK++E++ +G++RLS + EA AE P P + AAAS+
Sbjct: 664 YLKVGQTVAVKVLEIDRQGRIRLS----MKEA-AEKP----ADTAPAESAAASN 708
>gi|423367850|ref|ZP_17345282.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
gi|401082711|gb|EJP90976.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD142]
Length = 717
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/745 (41%), Positives = 445/745 (59%), Gaps = 62/745 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRPLRP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPLRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP--PELYKHV 331
+E D + EE +++A+ G D ++ + + +V+ GK K T+KL +L + V
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKT--TVKLYEVDADLNQAV 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+A ++ +Q+ K R A+S ++++V+ + E E
Sbjct: 247 REMAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAE 284
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ D + + G+V SE+ K+V +EV RR I R D
Sbjct: 285 EADADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPD 318
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 319 GRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRF 377
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNG
Sbjct: 378 MHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNG 437
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GD
Sbjct: 438 STSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGD 491
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS
Sbjct: 492 MDFKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIELSA 551
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K
Sbjct: 552 YAPKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAK 610
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
II ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+
Sbjct: 611 KIIEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKI 669
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD + VK+IE++ +G++ LSR+ LL
Sbjct: 670 GDEISVKVIEIDKQGRVNLSRKVLL 694
>gi|257126208|ref|YP_003164322.1| polynucleotide phosphorylase/polyadenylase [Leptotrichia buccalis
C-1013-b]
gi|257050147|gb|ACV39331.1| Polyribonucleotide nucleotidyltransferase [Leptotrichia buccalis
C-1013-b]
Length = 700
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/740 (40%), Positives = 448/740 (60%), Gaps = 52/740 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
G+++I + TG + RQA G+V V G T++ + + E DFFPL V+Y E+F A+
Sbjct: 11 LGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVREGQDFFPLTVDYIEKFYAS 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KRE + EVL+ RLIDRP+RP +GF + I+ VLSYD +++P+ LA
Sbjct: 71 GKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNAVHIVVTVLSYDEVNYPENLA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A+ LS++P + +AGV VG + ++I+NPT +++ +S++ L +AG+ DA+ M+E
Sbjct: 131 IIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVAGTKDAVTMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+SEE++++A+ G + ++EI E +E K K PE+ + ++
Sbjct: 191 AGAKEVSEEVMLEAIMFGHEKIKEICAEQDKFLEQFDVQKYEFEKKEVDPEIKEFIDGFE 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E+ K + K+ + +A+ +LE ++ YV K LE+ED+
Sbjct: 251 N-EVEKAIMTPGKLEKYEAIDNLEIELF-----EKYVQK-------------LENEDK-- 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
E+DE E + K +++V + +R I+ R+DGR
Sbjct: 290 ------EIDEN----------------LEKEFKKYYRDVEKRLVRDAILYKQYRADGRQT 327
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
IRPI LP HGSALFTRGETQ+L V TLG K+ Q ID +E D+ K+F+L Y
Sbjct: 328 TEIRPIDVEIDTLPVPHGSALFTRGETQALVVATLGSKEDEQIIDGME-DETRKKFFLHY 386
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE G + AP RRE+GHG LAERAL+ V+P + FPYT+R+ S ITESNGSSS
Sbjct: 387 NFPPYSVGEAGFMRAPGRRELGHGNLAERALKYVMPEQDKFPYTVRLVSEITESNGSSSQ 446
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+CGG LAL AGVPIK ++AG+AMG++ + D F +L+DI G ED GDMDFK
Sbjct: 447 ASICGGSLALMAAGVPIKSTVAGIAMGLIKEGDTF------TVLTDIQGLEDHLGDMDFK 500
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +DGITA QMDIK+ GIT +M+ AL+QA +GR I+ +M P +S++AP
Sbjct: 501 VAGTKDGITAIQMDIKIEGITREIMEIALRQALEGRLFIIDKMEAVISEPRAEVSENAPK 560
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I I+K+ P+KI +IG GGK +++II+ETGV +ID EDDGTV I K+ +++K+ ++
Sbjct: 561 IEILKISPDKIAGLIGPGGKVIRAIIDETGV-SIDIEDDGTVSIFGKESENMKKALELVK 619
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
T + IY ++ + +G FVE+ PG+EGL HISE+S+ + K ED +K G V
Sbjct: 620 RQTQSVELNTIYEG-KVTKLMKFGAFVEVLPGKEGLLHISEISNKRVEKTEDALKEGQNV 678
Query: 816 DVKLIEVNDKGQLRLSRRAL 835
VK+I + ++ + LS +AL
Sbjct: 679 RVKVISMENEDKFNLSMKAL 698
>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
JLW8]
gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
Length = 709
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 428/743 (57%), Gaps = 57/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +ETG + RQA AV V+ G+T++ +V DFFPL V+Y E+
Sbjct: 9 IQYGAHTLTLETGEISRQADAAVMVSYGDTVVLVAVTSKREVKAGQDFFPLTVDYMEKTY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E L RLIDRPLRP + FY+E Q+++ VLS D D
Sbjct: 69 AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEAFYNEVQVVATVLSSDPEIDADI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A A++LS +P + RVG + D++++NPT ++E+++LDL++A ++ A++M
Sbjct: 129 PAIIGASAAMSLSGIPYYGPLGAARVGYINDEYVLNPTKAQLEETELDLVVAATESAVMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E LSEE+++ AV G + ++ + + L GK P L + V
Sbjct: 189 VESEAKELSEEVMLGAVVYGHEQMQAVIKMISELAAEAGKDAWDWVAPEPDTALIEKVAS 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ QIK K R L + +VL +L+ +E
Sbjct: 249 LAAADINAAFQIKAKGARSAKLEEITSRVLA---------------------ELITEETS 287
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E + K +F+ + +K +R +I+ G R DGR
Sbjct: 288 TTE-----------------ANKIKNEIFN----------LEAKTVRSQILNGEPRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RPIS R G+LPR HGSALFTRGETQ+L V TLG + Q ID L+ + RF L
Sbjct: 321 DTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTGRDEQIIDALQGE-YADRFML 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+ PP + GE GR+G P RREIGHG LA+RAL LP+ DF YT+RV S ITESNGSS
Sbjct: 380 HYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAALPAKEDFDYTMRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCGGCLAL DAGVP+K +AG+AMG++ + + +L+DI G ED GDMD
Sbjct: 440 SMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEGNRVA------VLTDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG EDGITA QMDIK+ GIT +M+ AL QAK+GR HIL M + + +S+ A
Sbjct: 494 FKVAGTEDGITALQMDIKITGITAQIMQVALAQAKEGRAHILGIMKQAVSGANTEMSQFA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I MK+ PEKI +IG GG ++++ EETG ID EDDGTVKI +++
Sbjct: 554 PRIITMKINPEKIRDVIGKGGAVIRALTEETGT-TIDIEDDGTVKIACTSSEQGAEAQRR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I+ +T VG Y IK + +G V + PG++GL HIS+++ + D +K GD
Sbjct: 613 IAEITAEVEVGQTYEGTVIK-LLDFGAIVTLIPGKDGLLHISQIAHQRVNAVADFLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+V VK++E ++KG++RLS +AL+
Sbjct: 672 VVKVKVVEADEKGRVRLSMKALI 694
>gi|81702393|sp|Q74CS9.1|PNP_GEOSL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 697
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 317/751 (42%), Positives = 434/751 (57%), Gaps = 63/751 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V + FG R I + TG +QASGAV V+ G+T++ + E DFFPL VNYQE+
Sbjct: 6 VNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEK 65
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGFFKREGR D+E L R IDRP+RP + F ++TQI++ V+S D + P
Sbjct: 66 AYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDP 125
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
LA+ A A+ +S++P IAGV+VG V +F+ NPT +++E S L++++A S DA+
Sbjct: 126 GILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRDAV 185
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+EG SE+ +++A+ G AV+ I L ++ G PK L V
Sbjct: 186 IMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAATSVDEALKTRV 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++A + + ++I K R + + + L L +P+
Sbjct: 246 KDLAYAGIKEAVRIVAKQERHNRIGEITAQTLETL-----------------LPEY---- 284
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
EG E ++K + + +R I++ G R D
Sbjct: 285 -------------EG----------------RESEIKGFLGDFEYELVREHIIKDGYRID 315
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRPIS +LPRAHGSALFTRGETQ+L TLG QRID+L + KRF
Sbjct: 316 GRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETR-KRF 374
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE AP RREIGHG LAERALE V+P DFPYTIR+ S I ESNG
Sbjct: 375 LLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIRIVSDILESNG 434
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCGG LA+ DAGVPIK +AG+AMG++ + G+G ILSDI G ED GD
Sbjct: 435 SSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKE-----GEGIA-ILSDILGDEDHLGD 488
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ G+T +M+KAL QA+DGR HIL +M + P LS
Sbjct: 489 MDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAAPRTDLSP 548
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I + VK +KI +IGSGGK ++ I E TGV +ID ED G + I + + +K+
Sbjct: 549 YAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGV-SIDIEDSGRINIASTSKEACDKAI 607
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+I +LT G +Y +K + +G FVEI PG +GL HISEL + + DV+
Sbjct: 608 KMIRDLTAEAEEGKLYMGT-VKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLNE 666
Query: 812 GDLVDVKLIEVNDKGQLRLSRR----ALLPE 838
GD V VK I ++ +G+++LSR+ A+LPE
Sbjct: 667 GDKVLVKCIGIDKQGKIKLSRKEALGAVLPE 697
>gi|357404301|ref|YP_004916225.1| polyribonucleotide nucleotidyltransferase [Methylomicrobium
alcaliphilum 20Z]
gi|351716966|emb|CCE22631.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Methylomicrobium alcaliphilum
20Z]
Length = 694
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/749 (41%), Positives = 439/749 (58%), Gaps = 61/749 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEPSDFFPLNV 146
P+ + +GD+ + +ETG + RQA GAV + +G T++ T V + S DFFPL V
Sbjct: 2 NPIRKEFQYGDQLVTLETGEIARQADGAVMIDMEGTTLLVTVVGKKEANS-GGDFFPLTV 60
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
NYQE+ AAG+ GGFFKREGR + E L RLIDRP+RP GF +E QI++ VLS +
Sbjct: 61 NYQEKSFAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFTNEVQIIATVLSLN 120
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
P+ A+ A A+++S +P + + RVG ++++NPT + +SQL+L++AG
Sbjct: 121 PEVDPEIPALIGASAALSISGLPFNGPVGAARVGYKAGQYLLNPTPSSLAESQLELVVAG 180
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
++ A+LM+E LSEE+++ AV G + ++ +K L M K M E
Sbjct: 181 TEHAVLMVESEAQCLSEEVMLGAVLFGHEQMQTAIVAIKELAAMVNKAPMAWQPVAANTE 240
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V + Q+ K+ R++ L + N V K
Sbjct: 241 LESLVVAEVEAGIKAAYQVPEKLVRQEQLKEIR---------NAAVDK------------ 279
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
L DE +SE D++ + + + K +R I+E
Sbjct: 280 LTADEQ-----------------------------YSESDIRGIIENLEKKIVRGSILEE 310
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
G+R DGR +RPIS R G+LPR HGSALFTRGETQ+L V TLG ++ +Q ID LE +
Sbjct: 311 GKRIDGRDLKTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTERDSQVIDALEGEY 370
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F L Y+FPP VGE G +G+P RREIGHG LA+R ++ VLP+ ++FPY +RV S +
Sbjct: 371 R-ESFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGVQAVLPNMDEFPYVVRVVSEV 429
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK +AG+AMG++ + D+F +LSDI G E
Sbjct: 430 TESNGSSSMASVCGSSLALMDAGVPIKSPVAGIAMGLIKEGDQFA------VLSDIMGDE 483
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG+E+G+TA QMDIK+ GIT +MK AL+QAK GR HIL EM K
Sbjct: 484 DHLGDMDFKVAGSEEGVTALQMDIKIDGITAEIMKTALEQAKQGRLHILGEMNKSLSETR 543
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+S +AP I K+ P KI +IG GG ++SI E+TG +ID DDG VK+ + D +
Sbjct: 544 GQMSDYAPRIISFKIDPSKIREVIGKGGATIRSITEQTGA-SIDLTDDGIVKVASVDKQA 602
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
E+++ +I +T VG Y ++ + +G FV I PG++GL HIS++S + K
Sbjct: 603 GEEARRLIEEITAEVEVGKTYEG-KVARLMDFGAFVTILPGKDGLVHISQISDEHVDKVS 661
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
D + GD+V VK++E++ +G++RLS +A+
Sbjct: 662 DKLSEGDVVKVKVLEIDRQGRVRLSMKAV 690
>gi|417823768|ref|ZP_12470360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE48]
gi|340048397|gb|EGR09319.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE48]
Length = 709
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/755 (40%), Positives = 430/755 (56%), Gaps = 58/755 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + +F++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISADVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + G V VK++E++ +G++RLS + + +D
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSD 698
>gi|121728394|ref|ZP_01681422.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
gi|147674727|ref|YP_001216141.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O395]
gi|227117022|ref|YP_002818918.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
gi|187611333|sp|A5F913.1|PNP_VIBC3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121629328|gb|EAX61760.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae V52]
gi|146316610|gb|ABQ21149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
gi|227012472|gb|ACP08682.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O395]
Length = 712
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/755 (40%), Positives = 431/755 (57%), Gaps = 58/755 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISSEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + G V VK++E++ +G++RLS + + +D
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSD 698
>gi|384419824|ref|YP_005629184.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|353462738|gb|AEQ97017.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 704
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/742 (41%), Positives = 449/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + IA +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + + + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPS--DWVAPAKNDGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLAKEFGELEYQTMRGSVLSTKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|419760466|ref|ZP_14286745.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
H17ap60334]
gi|407514569|gb|EKF49384.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
H17ap60334]
Length = 697
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/743 (41%), Positives = 446/743 (60%), Gaps = 64/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
FG R+++V+ G + +Q++G+V V G++++ + ++D E DF PL V YQE+F AA
Sbjct: 11 FG-RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREG+ + +L RLIDRP+RP K ++ Q++ VLS DG PD
Sbjct: 70 GKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPDVTG 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA +A+ +S++P ++AGVR+G V KF+V PT +++E S+LD+++AGS DAI M+E
Sbjct: 130 IIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKDAITMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---LYKHVE 332
G ++EE ++ A+ V DA+++I + ++ KM I+ P P + K E
Sbjct: 190 GEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKM--EIEEPKPNETLIGKFEE 247
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
I+ EEL L IK K+ R L +++L E I + +E ED
Sbjct: 248 MISEEELRDKLLIKEKLERSAKLKEYRDQIL------------------EKIFEDVEMED 289
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+++ + E +K F E T K +R+ I+E G R+DG
Sbjct: 290 DEK-------------------------ILQESLLKEYFDERTKKLMRKIIIEEGIRADG 324
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D IRPI+ G+LPR HGSALFTRGETQSL ++TLG Q +D + ++ KRF
Sbjct: 325 RKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTI-MEEGTKRFI 383
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGEV + P RREIGHG LAERAL+ V+PS+ +FPY +RV S I ESNGS
Sbjct: 384 LHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVVPSEEEFPYVVRVVSEILESNGS 443
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VC G LAL DAGVPI+ +AGVAMG++++ DG ++L+DI G ED GDM
Sbjct: 444 SSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIE------DGQEVVLTDIQGLEDHWGDM 497
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +GITAFQMD KV G+ ++K+ALQQAK+ R IL M P SLS +
Sbjct: 498 DFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIMFNTIEKPRESLSPY 557
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
APLI +++ P K+ +IG GGK +KSII+E VE + G V I KD + ++
Sbjct: 558 APLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDDTTGKVSIYGKDQKKVNEAIE 617
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISEL---SSNWLAKAEDVV 809
I +T VGD++ +I I PYG+FVE+ PG+ GL H S+L S N+ K
Sbjct: 618 YIKTITKDIEVGDVFEG-KITRIEPYGIFVELMPGKIGLAHSSKLGEDSKNFKEK----Y 672
Query: 810 KVGDLVDVKLIEVNDKGQLRLSR 832
K+GD++ V ++ +++ G+++L +
Sbjct: 673 KIGDIIKVIVVNIDENGRIQLGK 695
>gi|228992535|ref|ZP_04152462.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
gi|228998583|ref|ZP_04158170.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|229006082|ref|ZP_04163770.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228755158|gb|EEM04515.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock1-4]
gi|228761051|gb|EEM10010.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides
Rock3-17]
gi|228767169|gb|EEM15805.1| Polyribonucleotide nucleotidyltransferase [Bacillus pseudomycoides
DSM 12442]
Length = 717
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 440/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ETG + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETGQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S+VP IAG VG + +FI+NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDVPFEGPIAGATVGRIDGEFIINPTVEQQEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE++++A+ G D ++ + + +V+ GK K + + + V E
Sbjct: 189 VEAGADQVPEEIMLEAIMFGHDEIKRLVAFQEEIVQAVGKEKTEVKLYEVDATINQDVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ N + ET+G V
Sbjct: 249 MAEKDMHAAIQVHEKHAREDAINEVKKRVIEHYEANE--ADGETLGQV------------ 294
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+E+ K+V +EV RR I R DGR
Sbjct: 295 -----------------------------NEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEQDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIAGLSREILEEALQQAKVGRMHILDHMLSAIAEPRKELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ D EK+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSIDQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FV + G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVGLFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|375130052|ref|YP_004992151.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
gi|315179225|gb|ADT86139.1| polyribonucleotide nucleotidyltransferase [Vibrio furnissii NCTC
11218]
Length = 711
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/752 (40%), Positives = 436/752 (57%), Gaps = 66/752 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+ S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E + LSEE ++ AV G D + + +KA+ E + + P
Sbjct: 182 GTESAVLMVESEAEVLSEEEMLSAVVFGHDQQQTV---IKAINEFAAEVATPAWDWVAPE 238
Query: 326 E---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKV-LTILSENGYVSKDETVGIV 381
E L + E+A +LV+ QI K+ R + + +V T+L+EN
Sbjct: 239 ENTALTAKIAELAEAKLVEAYQITEKMARYDRIHEISAEVSATLLAEN------------ 286
Query: 382 ETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRR 441
EE + PK ++ +F ++ +RR
Sbjct: 287 -------------EE-------------LNPK------------EIHTIFHDLEKTVVRR 308
Query: 442 RIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDN 501
I+ G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID
Sbjct: 309 SIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDE 368
Query: 502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIR 561
L + + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+R
Sbjct: 369 LTGERK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSIDEFPYTVR 427
Query: 562 VESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSD 621
V S ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSD
Sbjct: 428 VVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSD 481
Query: 622 ITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKC 681
I G ED GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 482 ILGDEDHLGDMDFKVAGTSNGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQA 541
Query: 682 SPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITA 741
+ +S+ AP IH MK+ +KI +IG GG ++ + EETG I+ EDDGT+KI A
Sbjct: 542 ISGARDDISQFAPRIHTMKISADKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAA 600
Query: 742 KDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNW 801
+ + I +T VG IY ++ +A +G FV + PG++GL HIS+++
Sbjct: 601 TSGEQAQDAIRRIEQITAEVEVGKIY-TGKVARLADFGAFVTVLPGKDGLVHISQIADKR 659
Query: 802 LAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
+ K DV+ G V VK++E++ +G++RLS +
Sbjct: 660 IEKVSDVLSEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|301055297|ref|YP_003793508.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
gi|300377466|gb|ADK06370.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus biovar
anthracis str. CI]
Length = 712
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASREAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|314933453|ref|ZP_07840818.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
C87]
gi|313653603|gb|EFS17360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus caprae
C87]
Length = 699
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/749 (40%), Positives = 452/749 (60%), Gaps = 65/749 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P+
Sbjct: 68 YAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSADSDCSPE 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V +++NP+ E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGNYVINPSVAEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G + E+K LV + +++D I+ PE
Sbjct: 188 MVEAGASEITESEMLEAIFFGHE-------EIKRLVAF--QQEIIDHIQ---PE------ 229
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+E + V + + + + +AL+ L++ VLT + +DE + + E +
Sbjct: 230 ---KQEFIPVERDEALVEKVQALTEEKGLKDTVLTFDKQQ----RDENLDALKEEVVAHF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E +++ +V + ++ + +RR I +
Sbjct: 283 IDEEDPENEALIN-------------------------EVYAILNDLVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID L + E
Sbjct: 318 IRPDGRKVDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEVE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T V+++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDHMLQTIGHPRK 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M + P+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMHINPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
++K II ++T VG +Y N ++K I YG FVE+ PG++ L HIS++S + K ED
Sbjct: 610 NRAKEIIEDITREAEVGQVY-NAKVKRIEKYGAFVELFPGKDALLHISQISKERINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
V+ +GD ++VK+ E++ +G++ S + LL
Sbjct: 669 VLNIGDSIEVKITEIDKQGRVNASHKTLL 697
>gi|148976703|ref|ZP_01813390.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
SWAT-3]
gi|145964054|gb|EDK29312.1| polynucleotide phosphorylase/polyadenylase [Vibrionales bacterium
SWAT-3]
Length = 706
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/760 (40%), Positives = 439/760 (57%), Gaps = 59/760 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV + DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E S+LDL+++
Sbjct: 122 NPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVVS 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+ A+LM+E D L+EE ++ AV G D + + N + P
Sbjct: 182 GTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + + +V +L VS+DE V + E
Sbjct: 242 ALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVL-----VSEDEEVNLKE--- 293
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
V +F ++ +RR I+
Sbjct: 294 -----------------------------------------VHSIFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ++ TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ +KI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGT-TIEIEDDGTIKIAATEGA 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY+ ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIYQG-KVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
D + G V VK++E++ +G++RLS + A+ A+ E P
Sbjct: 664 SDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAEGEAP 703
>gi|456063076|ref|YP_007502046.1| polynucleotide phosphorylase/polyadenylase [beta proteobacterium
CB]
gi|455440373|gb|AGG33311.1| polynucleotide phosphorylase/polyadenylase [beta proteobacterium
CB]
Length = 721
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 320/764 (41%), Positives = 441/764 (57%), Gaps = 63/764 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ Q+ +ETG + RQA GAV V +T++ +V + FFPL V+Y E+ AA
Sbjct: 13 WGNHQVTMETGEIARQAGGAVIVNVDDTVVMGTVVASKSAKPGQSFFPLTVDYLEKTYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR + E L+ RLIDRPLRP +GF +E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVVHVLSINPDVPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA A+A+S +P + + RVG ++++NPT E S++DL++AG+ A+LM+E
Sbjct: 133 LIAASAALAVSGIPFAGPVGAARVGYANGQYLLNPTRTEQATSEMDLIVAGTQAAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELY-KHVEEI 334
+ LSEE+++ AV G D ++ N + LV GKP+ D P E + V +
Sbjct: 193 SEANQLSEEIMLGAVVYGHDQMQTAINAINDLVREAGKPE-WDWTASPKDEPFIAKVTAL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
A L + QI+ K R L + + VL L+E
Sbjct: 252 AEAPLREAYQIRQKGARSDKLKEISKTVLAKLAE-------------------------- 285
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
EGDV V V + E+ +K +R +I+ G R DGR
Sbjct: 286 ----------EGDV--------------DAVAVSDIMFEIEAKIVRSQILNGEPRIDGRD 321
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI R G+LPR HGSALFTRGETQ+L V TLG + Q ID LE + RF
Sbjct: 322 TRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTARDEQIIDALEGEYR-DRFMFH 380
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+ PP + GE GR+G+P RREIGHG LA+RAL PVLPS DF Y+IRV S ITESNGSSS
Sbjct: 381 YNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIRVVSEITESNGSSS 440
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCGGCLA+ DAGVP+K +AGVAMG++LD + F +L+DI G ED GDMDF
Sbjct: 441 MASVCGGCLAMMDAGVPVKAHVAGVAMGLILDGNRFA------VLTDILGDEDHLGDMDF 494
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG +GITA QMDIKV GIT +M+ AL QAK+GR HIL++M + LS HAP
Sbjct: 495 KVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEAMGSVRTELSAHAP 554
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+ K+ P+KI +IG GG ++++ +ETG +ID +DDGTV I + + ++KA I
Sbjct: 555 RMVSFKIHPDKIREVIGKGGATIQALTKETGC-SIDIKDDGTVTIASTSAEGMAEAKARI 613
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
+T VG IY +K + +G V I PG++GL HISE+S+ + + +D + G +
Sbjct: 614 EGITAEAEVGKIYEGPVVK-LLEFGALVNILPGKDGLLHISEISNERVKEVKDYLAEGQV 672
Query: 815 VDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAA 858
V VKL+ +++G+LRLS +A + AD L D T + A
Sbjct: 673 VRVKLLAADERGRLRLSLKAAM--ADEGGTIAPLAGADATAEVA 714
>gi|389794728|ref|ZP_10197874.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter fulvus
Jip2]
gi|388431942|gb|EIL88982.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter fulvus
Jip2]
Length = 701
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/754 (40%), Positives = 436/754 (57%), Gaps = 60/754 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G+ ++ +ETG + RQASGAV V+ G T++ + A E DFFPL V+Y
Sbjct: 4 VTKSFQYGNHEVTLETGEIARQASGAVMVSMGGTVVLVTAVAATKQKEGQDFFPLTVDYV 63
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+F +AGR GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 EKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPDDFKNEVQVIAQVVSLNPEV 123
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
D +A+ A A++L+ +P I RVG ++++NPT E++ S LDL++AG+
Sbjct: 124 DGDIVALLGASAALSLAGIPFKGPIGAARVGYANGQYLLNPTATELKTSDLDLVVAGTAG 183
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSE++++ AV G ++ + L KP L
Sbjct: 184 AVLMVESEAKLLSEDVMLGAVMFGHKQMQTAIRAIAELAAEAAKPSWDWKAPARDESLVA 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V+ G++L Q+++K+ RR A+S+++ VL G ++ E G
Sbjct: 244 AVKGAVGDQLAAAFQVRDKLERRDAISAIKSDVLA-----GLKAQAEEKG---------- 288
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
++ V F+E+ +R +++ R
Sbjct: 289 --------------------------------WASAAVAKEFEELEYHTMRDSVLKTKVR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID--NLESDDE 507
DGR D +R IS+R G+LPR HGSALFTRGETQ+L VITLG + AQ ID ES D
Sbjct: 317 IDGRQLDDVRAISARIGVLPRTHGSALFTRGETQALVVITLGTTRDAQIIDAPGGESKDP 376
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F Y+FPP SVGE GR GAP RREIGHG LA+R ++ V P+ +FPY +RV S IT
Sbjct: 377 ---FLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPTIEEFPYVVRVVSEIT 433
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LA+ DAGVP+K +AG+AMG+V + ++F ++LSDI G ED
Sbjct: 434 ESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGNDF------VVLSDILGDED 487
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGI+A QMDIK+ GIT +MK AL QAK GR HIL EM KC
Sbjct: 488 HLGDMDFKVAGSADGISALQMDIKIDGITEEIMKVALAQAKQGRLHILGEMAKCLSTART 547
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP + +K+ P+KI +IG GG ++SI EETG ID DDGT+ I + + +
Sbjct: 548 EMSEFAPRLLTIKIHPDKIREVIGKGGATIRSITEETGT-TIDISDDGTIIIGSVNREAA 606
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E +K I +T G IY ++ + +G FV I PG++GL H+S++S + K D
Sbjct: 607 EAAKKRIEQITSDVEPGRIYEG-KVAKLMDFGAFVTIMPGKDGLVHVSQISDERVEKVSD 665
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
+K GD+V VK++EV+ +G++RLS +A+ E A
Sbjct: 666 KLKEGDIVKVKVLEVDKQGRIRLSMKAVTDEERA 699
>gi|153215841|ref|ZP_01950173.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
gi|153829184|ref|ZP_01981851.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
gi|229520938|ref|ZP_04410360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
11079-80]
gi|229530452|ref|ZP_04419840.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
12129(1)]
gi|419829193|ref|ZP_14352681.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-1A2]
gi|419831989|ref|ZP_14355454.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A2]
gi|421350476|ref|ZP_15800842.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-25]
gi|422916359|ref|ZP_16950697.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02A1]
gi|423817270|ref|ZP_17715301.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55C2]
gi|423849305|ref|ZP_17719087.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59A1]
gi|423878959|ref|ZP_17722694.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-60A1]
gi|423996781|ref|ZP_17740044.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02C1]
gi|424015483|ref|ZP_17755330.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55B2]
gi|424020594|ref|ZP_17760374.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59B1]
gi|424623962|ref|ZP_18062439.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A1]
gi|424628537|ref|ZP_18066843.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-51A1]
gi|424632498|ref|ZP_18070614.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-52A1]
gi|424635583|ref|ZP_18073604.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55A1]
gi|424639497|ref|ZP_18077393.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-56A1]
gi|424647656|ref|ZP_18085333.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A1]
gi|443528480|ref|ZP_21094514.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-78A1]
gi|124114558|gb|EAY33378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 1587]
gi|148875373|gb|EDL73508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 623-39]
gi|229332225|gb|EEN97713.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
12129(1)]
gi|229342171|gb|EEO07167.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae TM
11079-80]
gi|341640211|gb|EGS64802.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02A1]
gi|395954598|gb|EJH65208.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-25]
gi|408015768|gb|EKG53341.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A1]
gi|408020700|gb|EKG57987.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-52A1]
gi|408026699|gb|EKG63694.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-56A1]
gi|408027134|gb|EKG64116.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55A1]
gi|408036713|gb|EKG73134.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A1]
gi|408058743|gb|EKG93529.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-51A1]
gi|408621827|gb|EKK94819.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-1A2]
gi|408636493|gb|EKL08630.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55C2]
gi|408643667|gb|EKL15384.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-60A1]
gi|408644704|gb|EKL16378.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59A1]
gi|408651890|gb|EKL23129.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A2]
gi|408854159|gb|EKL93923.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-02C1]
gi|408861909|gb|EKM01476.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-55B2]
gi|408866459|gb|EKM05839.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-59B1]
gi|443453054|gb|ELT16887.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-78A1]
Length = 709
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/755 (40%), Positives = 431/755 (57%), Gaps = 58/755 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + G V VK++E++ +G++RLS + + +D
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSD 698
>gi|260775173|ref|ZP_05884071.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608874|gb|EEX35036.1| polyribonucleotide nucleotidyltransferase [Vibrio coralliilyticus
ATCC BAA-450]
Length = 710
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/763 (40%), Positives = 437/763 (57%), Gaps = 61/763 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + N + P
Sbjct: 182 GTEGAVLMVESEADNLTEEEMLSAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + + +V +L
Sbjct: 242 TLVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L ED E + ++H +F ++ +RR I+
Sbjct: 283 -LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAATEGT 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALL---PEADAENPP 845
D + G V VK++E++ +G++RLS + + EA AE P
Sbjct: 664 SDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTEEASAEEKP 706
>gi|229525300|ref|ZP_04414705.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
albensis VL426]
gi|229338881|gb|EEO03898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae bv.
albensis VL426]
Length = 709
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/756 (40%), Positives = 431/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVAIPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + + +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + G V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|206978199|ref|ZP_03239080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217961227|ref|YP_002339795.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH187]
gi|222097252|ref|YP_002531309.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus Q1]
gi|229140448|ref|ZP_04269003.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|229197917|ref|ZP_04324633.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|375285729|ref|YP_005106168.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|384181617|ref|YP_005567379.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|423353509|ref|ZP_17331136.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|423374396|ref|ZP_17351734.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|423567298|ref|ZP_17543545.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|423574587|ref|ZP_17550706.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|423604566|ref|ZP_17580459.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
gi|226702618|sp|B7HLE0.1|PNP_BACC7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782706|sp|B9IV96.1|PNP_BACCQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206743616|gb|EDZ55042.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
H3081.97]
gi|217066515|gb|ACJ80765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH187]
gi|221241310|gb|ACM14020.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus Q1]
gi|228585635|gb|EEK43737.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus m1293]
gi|228643009|gb|EEK99285.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST26]
gi|324327701|gb|ADY22961.1| polynucleotide phosphorylase/polyadenylase [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|358354256|dbj|BAL19428.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus NC7401]
gi|401089322|gb|EJP97493.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus IS075]
gi|401094308|gb|EJQ02390.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AND1407]
gi|401212112|gb|EJR18858.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-D12]
gi|401214386|gb|EJR21116.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MSX-A12]
gi|401245186|gb|EJR51544.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD102]
Length = 712
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|340756944|ref|ZP_08693548.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
ATCC 27725]
gi|251834209|gb|EES62772.1| polyribonucleotide nucleotidyltransferase [Fusobacterium varium
ATCC 27725]
Length = 699
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 313/744 (42%), Positives = 450/744 (60%), Gaps = 51/744 (6%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V++ R + TG + RQ+ GAV V GET++ ++V + P + +DFFPL V+Y E+
Sbjct: 7 VELELAGRTLSFSTGKIARQSCGAVMVQYGETVLLSTVNRSKEPRKGADFFPLTVDYIEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F AAG+ GGF KREGR + L RLIDRP+RP +GF H+ I++ V SYD + P
Sbjct: 67 FYAAGKFPGGFNKREGRPSTNATLTARLIDRPIRPMFPEGFNHDVHIVNTVFSYDEKNTP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D L + + +A+ LS++P +AGV VG +FI+NPT +E+E S+L+L +AGS DA+
Sbjct: 127 DYLGIIGSSMALMLSDLPFLGPVAGVVVGYKNGEFILNPTPEELETSELELSVAGSKDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
M+E L EE ++ A+ + +++I + ++ GK K++ + P + +
Sbjct: 187 NMVEAGAKELDEETMLAAIMFAHENIKKICAFQEEFAKVAGKEKIVFVKEEVLPLVKDFI 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+E E L + K R +A+ SLEE+++ Y + +E+E
Sbjct: 247 DEKGMERLKAAVLTLGKKAREEAVDSLEEELMEAFILENY--------------EGVEEE 292
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
D EEV+ GE K + ++ K +R I+ R D
Sbjct: 293 DIPEEVI--GE------------------------FKGYYHDLMKKLVREAILYHKHRVD 326
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR IRP+ + G+LP HGSA+FTRGETQ++ V TLG K+ Q +D+LE + K+F
Sbjct: 327 GRKTTEIRPLFAETGVLPIPHGSAMFTRGETQAIVVTTLGTKEDEQLVDDLEK-EYFKKF 385
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
YL Y+FPP SVGE GR+G+P RRE+GHG+LAERAL V+PS+ +FPYTIRV S ITESNG
Sbjct: 386 YLHYNFPPYSVGETGRMGSPGRRELGHGSLAERALSYVIPSEEEFPYTIRVVSEITESNG 445
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSS AS+CGG L+L AGVPIK +AG+AMG++ + +EF +L+DI G ED GD
Sbjct: 446 SSSQASICGGSLSLMAAGVPIKEHVAGIAMGLIKEGEEF------TVLTDIMGLEDHLGD 499
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG ++GITA QMDIK+ GIT +M+ AL+QA D R IL M P++ L
Sbjct: 500 MDFKVAGTKNGITALQMDIKITGITEEIMRIALKQALDARNEILVVMNNAISAPAD-LRP 558
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+ P IH MK+ +KI +IG GGK +K IIE+TG ID DDG V I +KD L+++
Sbjct: 559 NVPRIHQMKIATDKIAALIGPGGKNIKGIIEKTGA-TIDISDDGNVSIFSKDEEVLKETI 617
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
+++ VG+IY N + +IA +G F+EI PG+EGL H+SE+S+ +A EDV+KV
Sbjct: 618 TLVNAFVKDVEVGEIY-NGRVVNIAKFGAFMEILPGKEGLLHVSEISNERVANVEDVLKV 676
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD DVK+I + G++ LS++ +
Sbjct: 677 GDKFDVKVIS-TENGKISLSKKKI 699
>gi|262163939|ref|ZP_06031678.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
gi|262172277|ref|ZP_06039955.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|261893353|gb|EEY39339.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus MB-451]
gi|262027467|gb|EEY46133.1| polyribonucleotide nucleotidyltransferase [Vibrio mimicus VM223]
Length = 709
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/763 (40%), Positives = 434/763 (56%), Gaps = 61/763 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + N + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVINAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + + +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVSAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDAKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ +KI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVDKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLP---EADAENPP 845
D + G V VK++E++ +G++RLS + + EA AE P
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETPVEAAAEVAP 706
>gi|423395894|ref|ZP_17373095.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|423406770|ref|ZP_17383919.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
gi|401653636|gb|EJS71180.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-1]
gi|401660060|gb|EJS77543.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-3]
Length = 712
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 445/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A+++++++V+ + E E+
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINAVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ V +IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVDEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|82750875|ref|YP_416616.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
RF122]
gi|117940113|sp|Q2YXP2.1|PNP_STAAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|82656406|emb|CAI80825.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
RF122]
Length = 698
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/748 (40%), Positives = 451/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNMVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG + K+I+NPT +E E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYIINPTVEEKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E+ +++A+ G + E++ LV+ ++ H++
Sbjct: 188 MVEAGASEITEQEMLEAIFFGHE-------EIQRLVDF-------------QQQIVDHIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ +E + + + + R K+L+ L+E VLT + +DE + + E + +
Sbjct: 228 PVK-QEFIPAERDEALVERIKSLTEEKGLKETVLTFDKQQ----RDENLDNLKEEIVNEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+++ED + E+++ +V + E+ + +RR I +
Sbjct: 283 IDEEDPENELLIK-------------------------EVYAILNELVKEEVRRLIADEK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + S G+LPR HGS LFTRG+TQ+L+V+TLG Q ID L ++E
Sbjct: 318 IRPDGRKPDEIRQLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYTIR+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKIDGLTREIIEEALEQARRGRLEIMNHMLQTIDQPRT 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KP+KI +IG GGKK+ II+ETGV+ +D E DGT+ I A D + +
Sbjct: 551 ELSAYAPKVVTMTIKPDKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQAMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II +T VG Y+ +K I YG FV + PG++ L HIS++S N + K ED
Sbjct: 610 NRAREIIEEITREAEVGQTYQ-ATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G++ S RAL
Sbjct: 669 VLKIGDTIEVKITEIDKQGRVNASHRAL 696
>gi|402301922|ref|ZP_10821044.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. FOBRC9]
gi|400381307|gb|EJP34109.1| polyribonucleotide nucleotidyltransferase [Selenomonas sp. FOBRC9]
Length = 690
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/746 (41%), Positives = 441/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S +I G R I+VE G M +QA+GA V G+T++ + + P E DFFPL V+Y+E
Sbjct: 3 SFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDYEE 62
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GGF KREGR + VL RLIDRP+RP +GF ++ QI++ VLS D +
Sbjct: 63 KMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNP 122
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ A+ A A+ +S++P IAGVRVG V F++NP +E S+L+L +AGS DA
Sbjct: 123 PEIAAMLGASCALTVSDIPFMGPIAGVRVGYVNGAFVINPKEEERAVSELNLTVAGSYDA 182
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E + LSEE+++ A+ G +R + K + +CGK K + I EL +
Sbjct: 183 VMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSVCGKEKQIPAIFAVSEELEEK 242
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ A E L + ++K+ R ++++ K ET+
Sbjct: 243 IRVYAEERLDAATRNEDKLGRDANIAAI---------------KSETM------------ 275
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E +V+ P+ K + +++ +V +T + +R
Sbjct: 276 ----EHFIVE----------YPEQAKEISQILYKIEKSIVRHMITHEKIR---------P 312
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RP+S G+LPR HGS LFTRG+TQ L V TLG Q ID L + K
Sbjct: 313 DGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGL-GPETTKH 371
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FP SVGE + +P RREIGHG LAERAL P++PS DFPYTIR+ S I ESN
Sbjct: 372 YLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDFPYTIRLVSEILESN 431
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSM SVCG L+L AGVPIK ++GVAMG+V D D++ IL+DI G EDA G
Sbjct: 432 GSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYS------ILTDIQGMEDALG 485
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG GITA QMDIK+ GIT ++ AL QAK+GR IL +ML+C P+ LS
Sbjct: 486 DMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILGKMLECIDKPAEELS 545
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + + + +KI +IGSGGK V+ II+ETGV+ ID +DG + IT+ + +++++
Sbjct: 546 PYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVD-IDIHEDGNIFITSPNTEAMDRA 604
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+ +I ++ VG+IY + +G FVE+ PG+EGLCHIS+L+ + + EDVV
Sbjct: 605 RKMIEDIVRDVEVGEIYTG-RVTRFLKFGAFVELLPGKEGLCHISQLAKHRVESVEDVVH 663
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD + VK+IE+++KG++ +S + LL
Sbjct: 664 VGDELQVKVIEIDEKGRINVSHKVLL 689
>gi|302342332|ref|YP_003806861.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
DSM 2075]
gi|301638945|gb|ADK84267.1| polyribonucleotide nucleotidyltransferase [Desulfarculus baarsii
DSM 2075]
Length = 749
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 320/769 (41%), Positives = 441/769 (57%), Gaps = 72/769 (9%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V G R+ ++ETG + +QASGAV V GET++ +V E DF PL V+YQE
Sbjct: 5 VATTIGGREFVIETGKIAKQASGAVWVQYGETVVLVTVVGDTNVREGIDFLPLTVDYQEM 64
Query: 152 FSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
AAGR G FF+RE GR + E L RLIDRP+RP + KG+ ETQI++ V+S D ++
Sbjct: 65 SYAAGRIPGNFFRREIGRPSEKETLTSRLIDRPVRPRMNKGWTFETQIIATVMSVDRVNE 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+T A A+ +S+VP IAGVRVG V + ++NPT +++E S L+LL+AGS DA
Sbjct: 125 PDVMAMTGASAALMVSDVPFDGPIAGVRVGRVDGQLVLNPTAEQIEKSDLELLVAGSRDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---- 326
+ M+EG L E+ +++A+ G ++ + + + L GKP D PP
Sbjct: 185 VCMVEGGSLMLGEDEILEAIWFGHAGLQPLLDIQEELAAAVGKP---DREFTPPASDDHE 241
Query: 327 ---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
L + A L +VL K K+ R L++ VL +
Sbjct: 242 LTALVAQAAQSAEPSLAEVLSTKPKLERYAKKRLLKKAVLAAM----------------- 284
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
GE G E VK + + ++ +R I
Sbjct: 285 -----------------GEAAAG----------------REGQVKEAVEHLIAEGMRTAI 311
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
+E GRR DGR +RPI G+LPR HGSALFTRGETQ+L V TLG QRI+++
Sbjct: 312 LEEGRRIDGRTVTEVRPIDCEVGVLPRTHGSALFTRGETQALVVATLGTAGDEQRIESVT 371
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
D + F L Y+FPP SVGE R+G P+RRE+GHG LA RA+E +LP+ DFPY +R
Sbjct: 372 EGDVFRHFLLHYNFPPYSVGEAKRLGGPNRRELGHGALARRAVEKILPAKEDFPYCLRCV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG +AL DAGVP+ ++AGVAMG++ + D+ ++L+DI
Sbjct: 432 SEITESNGSSSMASVCGSSMALMDAGVPVSEAVAGVAMGLIKEGDKM------VVLTDIM 485
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ GI+A QMDIK+ GI+ +M +AL+QA++GR HIL EM K
Sbjct: 486 GDEDHLGDMDFKVAGSARGISAVQMDIKISGISKEIMGQALKQAREGRLHILGEMQKAID 545
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
P +S AP I + V E+I IIG GGK ++ I ET ID +DDGTV++ A D
Sbjct: 546 NPRQEISILAPRITTIHVPVERIKDIIGPGGKVIRGIQMETEAR-IDIDDDGTVRVAAVD 604
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
++ ++ +I L +Y ++ I +G FVEI PGR+GL HISEL +
Sbjct: 605 GAASLRAVEMIKELIQEVEENAVYEG-KVVRIMDFGAFVEILPGRDGLIHISELDHTRVR 663
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGD 852
DV+K GD+V VK++ ++D+G++RLSR+ALLP + P P GD
Sbjct: 664 AVTDVIKEGDVVQVKVLGIDDRGKIRLSRKALLPIPEGGVPA---PEGD 709
>gi|229012990|ref|ZP_04170155.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|423488982|ref|ZP_17465664.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
gi|423494707|ref|ZP_17471351.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|423498501|ref|ZP_17475118.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|423661354|ref|ZP_17636523.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|228748244|gb|EEL98104.1| Polyribonucleotide nucleotidyltransferase [Bacillus mycoides DSM
2048]
gi|401150800|gb|EJQ58252.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER057]
gi|401160550|gb|EJQ67928.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus CER074]
gi|401301395|gb|EJS06984.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM022]
gi|402432230|gb|EJV64289.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BtB2-4]
Length = 717
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 442/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A+S ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|114321093|ref|YP_742776.1| polynucleotide phosphorylase/polyadenylase [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227487|gb|ABI57286.1| Polyribonucleotide nucleotidyltransferase [Alkalilimnicola
ehrlichii MLHE-1]
Length = 720
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/744 (40%), Positives = 437/744 (58%), Gaps = 63/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA GAV V +T++ + FFPL VNYQER AA
Sbjct: 32 YGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTYAA 91
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR + E L CRLIDRP+RP +GFY+E Q+++ VLS + D A
Sbjct: 92 GKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIPA 151
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S +P I RVG ++++NPT +E S LDL++AG+++A+LM+E
Sbjct: 152 LIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENAVLMVE 211
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----LYKHV 331
+ L EE ++ AV G + ++ + L GKP+ PP+ L +
Sbjct: 212 SEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRW----DWHPPQGDAALETAI 267
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G++L QI K R+ + L ++ + L EN ++E G
Sbjct: 268 KDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGEN----REEEGG------------ 311
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ E DV FK + +R RI+ G RR D
Sbjct: 312 ------------------------------WPEKDVGDAFKGLEKDIVRGRILAGERRID 341
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI G LPR HGSA+FTRGETQ++ V TLG + AQ ID +E + + ++F
Sbjct: 342 GRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERK-EQF 400
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP VGE G +G P RREIGHG LA+R +E V+P+ +D PY IRV S ITESNG
Sbjct: 401 MLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDCPYVIRVVSEITESNG 460
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG L+L DAGVP+K +AG+AMG++ + ++F +LSDI G ED GD
Sbjct: 461 SSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFA------VLSDILGDEDHLGD 514
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ GIT +M++AL+QA++GR HIL EM P + +S+
Sbjct: 515 MDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAISGPRSEMSE 574
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP + +++ P+KI +IG GG ++++ EETG ID DDG V I + D ++ ++++
Sbjct: 575 YAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGT-TIDISDDGKVTIASADKAAADEAR 633
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT VG +Y ++ + +G FV I PGR+GL HIS++S+ + + D +K
Sbjct: 634 RRIELLTADVEVGTVYEG-KVSKLMDFGAFVNILPGRDGLVHISQISNERVERVGDYLKE 692
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VK++EV+ +G++RLS +A+
Sbjct: 693 GDTVRVKVLEVDRQGRIRLSMKAV 716
>gi|417950503|ref|ZP_12593624.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus ATCC
33789]
gi|342806427|gb|EGU41651.1| polynucleotide phosphorylase/polyadenylase [Vibrio splendidus ATCC
33789]
Length = 706
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/760 (40%), Positives = 439/760 (57%), Gaps = 59/760 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV + DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVQGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E S+LDL+++
Sbjct: 122 NPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVVS 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+ A+LM+E D L+EE ++ AV G D + + N + P
Sbjct: 182 GTAGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVINAINEFAAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + + +V +L VS+DE V + E
Sbjct: 242 ALNTRIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVL-----VSEDEEVNLKE--- 293
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
V +F ++ +RR I+
Sbjct: 294 -----------------------------------------VHSIFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ++ TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ +KI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REEISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGT-TIEIEDDGTIKIAATEGA 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY+ ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIYQG-KVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLS-RRALLPEADAENP 844
D + G V VK++E++ +G++RLS + A+ A+ E P
Sbjct: 664 SDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAEGEAP 703
>gi|402565951|ref|YP_006615296.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cepacia
GG4]
gi|402247148|gb|AFQ47602.1| polynucleotide phosphorylase/polyadenylase [Burkholderia cepacia
GG4]
Length = 715
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 314/760 (41%), Positives = 444/760 (58%), Gaps = 69/760 (9%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDE-TVGIVETIPDLLE 389
A +L+ Q+++K R L + L E+ G V+ D+ TVG V
Sbjct: 252 AQGDLLAAYQLRDKQARSTKLKEVYSATSAKLEEDALAAGTVAADKATVGNV-------- 303
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
LF ++ +K +R +I+ G R
Sbjct: 304 -------------------------------LF----------DIEAKIVRSQILNGEPR 322
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +
Sbjct: 323 IDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-E 381
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITES
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITES 441
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED
Sbjct: 442 NGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHL 495
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + L
Sbjct: 496 GDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQL 555
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + + +
Sbjct: 556 SEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTNSEGMAE 614
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I +T VG +Y +K + +G V + PG++GL HISE+ + + D +
Sbjct: 615 AKKRIEQITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYL 673
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADA----ENPP 845
K G V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 674 KEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAASQSDTPP 713
>gi|171316299|ref|ZP_02905520.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MEX-5]
gi|171098525|gb|EDT43326.1| Polyribonucleotide nucleotidyltransferase [Burkholderia ambifaria
MEX-5]
Length = 714
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 314/759 (41%), Positives = 444/759 (58%), Gaps = 68/759 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDE-TVGIVETIPDLLE 389
A +L+ Q+++K R L + L + G V+ D+ TVG V
Sbjct: 252 AHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEADALAAGTVAADKATVGNV-------- 303
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
LF ++ +K +R +I+ G R
Sbjct: 304 -------------------------------LF----------DIEAKIVRSQILNGEPR 322
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +
Sbjct: 323 IDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-E 381
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITES
Sbjct: 382 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITES 441
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED
Sbjct: 442 NGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHL 495
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + L
Sbjct: 496 GDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQL 555
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + +
Sbjct: 556 SEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAE 614
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K I N+T+ VG +Y +K + +G V + PG++GL HISE+ + + D +
Sbjct: 615 AKKRIENITVEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYL 673
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALLPEADA---ENPP 845
K G V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 674 KEGQQVKVKVIQTDEKGRVRLSAKALLNEAAASQSDTPP 712
>gi|383754382|ref|YP_005433285.1| putative polyribonucleotide nucleotidyltransferase [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366434|dbj|BAL83262.1| putative polyribonucleotide nucleotidyltransferase [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 689
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/746 (40%), Positives = 443/746 (59%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S ++ G R++ +ETG + +QA+GA V G+T++ + + P E DFFPL V+Y+E
Sbjct: 3 SFEMELGGRKLTIETGKLAKQANGAAFVRYGDTVVLVTATASAEPREGVDFFPLTVDYEE 62
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GGF KREGR +L RLIDRP+RP KG+ ++ QI++ V+S + +
Sbjct: 63 KMYAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGYRNDVQIVATVMSVEQDNA 122
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ A+ A A+ +S++P IAGVRVG V D+F++NPT ++ + S L+L +AGS DA
Sbjct: 123 PELAAMIGASAALCISDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSKDA 182
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E + L E++++ A+ G ++ I + + + CGK K + + P EL
Sbjct: 183 VMMVEAGANELPEDVILDAILYGHQEIKRIVAFQEEIQQACGKEKRITKLFTVPEELEAA 242
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ E A + L + + +K+ R ++ + +
Sbjct: 243 IREYAKDRLDEATRNPDKLDRDAHIAEV-------------------------------N 271
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
D E +V+ P+ K M +++ ++V +T + +R
Sbjct: 272 ADTMEHFLVE----------YPEMDKEIAMALHDLEKEIVRHMITHEKIR---------P 312
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RP+S GLLPRAHGS LFTRG+TQ + V TLG Q ID L + K
Sbjct: 313 DGRGLEEVRPVSCEVGLLPRAHGSGLFTRGQTQIMTVTTLGPMSDEQIIDGL-GPETTKH 371
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FP SVGE I +P RREIGHG LAERAL PV+PS +FPYTIR+ S + ESN
Sbjct: 372 YIHHYNFPGYSVGEAKPIRSPGRREIGHGALAERALVPVIPSTEEFPYTIRLVSEVLESN 431
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSM SVCG L+L AGVPIK ++GVAMG+V + D + IL+DI G EDA G
Sbjct: 432 GSSSMGSVCGSTLSLMQAGVPIKRPVSGVAMGLVKEGDAY------TILTDIQGMEDALG 485
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E+G+TA QMDIKV GI ++ ALQQAK GR IL +ML+ P+ LS
Sbjct: 486 DMDFKVAGTENGVTAIQMDIKVAGIDRNILSSALQQAKRGRAFILGKMLEVIDKPNEDLS 545
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + M++K +KI +IG+GGK VK II+ TGV+ ID +DG + I + D ++K+
Sbjct: 546 PYAPRVETMQIKVDKIRDVIGTGGKVVKGIIDATGVQ-IDIHEDGNIFIFSADAEGMKKA 604
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+ +I ++ VG++Y + + +G FVE+ PG+EGLCHIS+L+ + EDVV+
Sbjct: 605 RQMIEDIVKEVEVGEVYTGT-VTRLMKFGAFVEVLPGKEGLCHISQLAKRRVENVEDVVQ 663
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD ++VK++E++DKG++ LS + LL
Sbjct: 664 VGDQLEVKVVEIDDKGRVNLSHKVLL 689
>gi|374852729|dbj|BAL55655.1| polyribonucleotide nucleotidyltransferase [uncultured Chloroflexi
bacterium]
Length = 743
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 314/750 (41%), Positives = 438/750 (58%), Gaps = 58/750 (7%)
Query: 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNV 146
P+ G R I ETG + QA+GAVTV GET+I+ + ++ DFFPL+V
Sbjct: 3 PEAKQFSTTVGGRVITFETGKLAGQANGAVTVQLGETMIFAAATMSKTARADVDFFPLSV 62
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
Y+ER A GR G FF+REG+ +L RL DRP+RP KG +E QI+ + LS D
Sbjct: 63 EYEERMYAGGRIPGSFFRREGKPSTEAILTARLADRPIRPLFPKGMRNEVQIIMYSLSVD 122
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
+ D LA+ AA A+ +S++P + + VRVGL+ +F+VNPT QEME S LDL +AG
Sbjct: 123 NENPIDILAINAASAALMISDIPWNGPVGAVRVGLLDGEFVVNPTFQEMERSDLDLRIAG 182
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+ DAILM+E + E++++ A++ G A++ + + + + GKPK + LP
Sbjct: 183 TRDAILMVECGAKEVPEDVMVAALEFGHRALQPLIDLQEQMRAEVGKPKAEPILILPDET 242
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L + V E E + ++L +K ++ +S E +L V+ + T G E P
Sbjct: 243 LLESVFERVKEPMSELL---DKPLSKEEFNSGMEALL------AQVTAEMTTG--ENPP- 290
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
S D++L F E + +R RI+EG
Sbjct: 291 ------------------------------------SPQDIQLAFTEAEKRLVRARILEG 314
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
+R DGR IRPI + PRAHGS LFTRGETQ L + TLG AQ ID+L
Sbjct: 315 -KRPDGRGPKDIRPIWCEVDIAPRAHGSGLFTRGETQVLTLATLGTLSEAQEIDSL-IPQ 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
E KR+ Y+FPP S GEV + SRREIGHG LAERALEPV+P +++FPYT+R+ S +
Sbjct: 373 ETKRYMHHYNFPPFSTGEVKPLRGQSRREIGHGALAERALEPVIPPESEFPYTLRLVSEV 432
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
SNGS+SMASVCG LAL D GVPIK +AGVAMG+V + D + +IL+DI G+E
Sbjct: 433 LSSNGSTSMASVCGSTLALMDTGVPIKAPVAGVAMGLVKEGDRY------VILTDIQGAE 486
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG GITA QMDIK+GG+T +M +AL+QA+ R IL +ML+ P P
Sbjct: 487 DHLGDMDFKVAGTAKGITALQMDIKIGGLTKEIMAEALEQARQARLAILEKMLEVIPAPR 546
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
L HAP I + + +KI ++IG GGK V++I +ET ID +DGTV I A + +
Sbjct: 547 PELKPHAPRITTVLIPTDKIGVLIGPGGKTVRAIQQETDT-TIDIREDGTVYILATNAEN 605
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
++ I LT P VG+IY +++ +G FVEI PG +G+ HIS+L + + + E
Sbjct: 606 ARAARDRIKWLTAEPEVGEIYTGRVVRT-TDFGAFVEILPGTDGMVHISQLDTTRVNRVE 664
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
DVVKVGD + V + +++ G++RLSR+A+L
Sbjct: 665 DVVKVGDEITVMVTDIDPDGKIRLSRQAVL 694
>gi|384108653|ref|ZP_10009544.1| polyribonucleotide nucleotidyltransferase [Treponema sp. JC4]
gi|383869761|gb|EID85369.1| polyribonucleotide nucleotidyltransferase [Treponema sp. JC4]
Length = 701
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 315/751 (41%), Positives = 446/751 (59%), Gaps = 61/751 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V GD +++ETG +G+QA+G V G + ++C + +E DF P+ V Y E+
Sbjct: 6 VTYKLGDADLILETGKIGKQANGCVYAQWGGAAVIATICASSSVTEGQDFVPVTVEYNEK 65
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
F AAG+ GGF KREGR KD E+LV RLIDRP+RP F HE QI+ +S DG+H
Sbjct: 66 FYAAGKIPGGFVKREGRPKDKEILVSRLIDRPMRPLFEPSFGHELQIVPTCVSCDGVHTQ 125
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LAV AA A +S++P +A R+G + ++IVNPT +++E+S+L++++AG+ D
Sbjct: 126 DILAVIAASAATTISDIPFHGPVAACRIGYLNGEYIVNPTFKQIEESELEIVVAGTKDGF 185
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL-YKH 330
M+EG + +SE++++ A++ Q + ++ + L GK K+ L P ++ +
Sbjct: 186 TMVEGGANEVSEDVMLGALEKAQAFISDMCKLQEELAAKAGKEKL----PLNPLDVTLAN 241
Query: 331 VEEIAGEE--LVKVLQIKN-KIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
E+I E L+K ++ K+ R KA++ +E+++ +E
Sbjct: 242 AEQIEAEATPLLKEACFQDGKMARGKAIAKVEKELAAKYAEQ------------------ 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
LED P K L ++ KL LR+ I++ G
Sbjct: 284 LED---------------------PIQAKLFMTLMDDIQYKL---------LRKSILDDG 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRPI+ +LP HGSALFTRGETQSLAV TLG Q D+++ D
Sbjct: 314 VRIDGRKTDEIRPITCEVNVLPTPHGSALFTRGETQSLAVCTLGTAMDEQSYDDIDGDRS 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE G++ RREIGHG LA R+L ++PS +FPYTIRV S I
Sbjct: 374 -EHFILHYNFPPYSVGETGKL-TTGRREIGHGNLARRSLAAMVPSREEFPYTIRVVSEIM 431
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS CGG L + AGVP+K +AG+AMG++ + + G ILSDI G ED
Sbjct: 432 ESNGSSSQASTCGGTLCMLAAGVPMKKMVAGIAMGLITEPEGDNPYGRYSILSDILGEED 491
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +DGIT FQMDIK+ G+T +MKKA++QA+ GR HIL+ M KC P+
Sbjct: 492 HLGDMDFKVAGTKDGITGFQMDIKIAGVTTEIMKKAMEQARQGRLHILSIMEKCIDKPA- 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
L+K+AP I MK+ +KI +IG GGK VK++ + V I+T+DDGTV I AK+ +
Sbjct: 551 PLAKNAPQILTMKIPVDKIGALIGPGGKNVKALCSQYDV-TINTDDDGTVTIYAKNGMNA 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E ++ + +T P VG IY+ +K I +G FVEI PG+EGLCHIS+LS ++K D
Sbjct: 610 EAAQKAVKGITEDPEVGTIYQGT-VKRIMEFGAFVEILPGKEGLCHISKLSRQRVSKVTD 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
V+K G ++ VKL+EV+ +G+L LS L E
Sbjct: 669 VLKEGQVIPVKLLEVDKQGRLNLSYVDALEE 699
>gi|417819502|ref|ZP_12466118.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE39]
gi|423947605|ref|ZP_17733564.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-40]
gi|423976875|ref|ZP_17737112.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-46]
gi|340041064|gb|EGR02032.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE39]
gi|408661621|gb|EKL32605.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-40]
gi|408666089|gb|EKL36891.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-46]
Length = 709
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/755 (40%), Positives = 430/755 (56%), Gaps = 58/755 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RRDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + G V VK++E++ +G++RLS + + +D
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSD 698
>gi|238750129|ref|ZP_04611632.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
gi|238711673|gb|EEQ03888.1| Polyribonucleotide nucleotidyltransferase [Yersinia rohdei ATCC
43380]
Length = 707
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 310/744 (41%), Positives = 432/744 (58%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 INPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E D LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 GAVLMVESEADILSEDQMLGAVVFGHEQQQIVIENINALVAEAGKPKW-DWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V E+A L +I K R + +++ V L +++D+T+ E I D+
Sbjct: 243 RARVAELATARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTLDASE-IQDI 296
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
L ++D +R R++ G
Sbjct: 297 LGSVEKD-------------------------------------------VVRSRVLRGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+P+ DFPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPNAADFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ +GITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T VG IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVGRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVMEVDRQGRIRLS 688
>gi|400756528|ref|NP_952644.4| polynucleotide phosphorylase/polyadenylase [Geobacter
sulfurreducens PCA]
gi|409912114|ref|YP_006890579.1| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
gi|307634882|gb|ADI84427.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
KN400]
gi|399107839|gb|AAR34967.2| polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens
PCA]
Length = 740
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 320/752 (42%), Positives = 436/752 (57%), Gaps = 65/752 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V + FG R I + TG +QASGAV V+ G+T++ + E DFFPL VNYQE+
Sbjct: 49 VNVEFGGRTITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDFFPLTVNYQEK 108
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
A G+ GGFFKREGR D+E L R IDRP+RP + F ++TQI++ V+S D + P
Sbjct: 109 AYAGGKIPGGFFKREGRPSDNETLTSRFIDRPIRPLFPESFLNDTQIMATVVSADQDNDP 168
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
LA+ A A+ +S++P IAGV+VG V +F+ NPT +++E S L++++A S DA+
Sbjct: 169 GILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLEIVVAASRDAV 228
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
+M+EG SE+ +++A+ G AV+ I L ++ G PK
Sbjct: 229 IMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPK---------------- 272
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
R A +S++E + T + + Y E V IV
Sbjct: 273 -------------------REVAATSVDEALKTRVKDLAYAGIKEAVRIVA--------- 304
Query: 392 DEDEEVVVDGEVDEGDVH-IKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ E GE+ + + P+ E ++K + + +R I++ G R
Sbjct: 305 -KQERHNRIGEITAQTLETLLPEYEGR------ESEIKGFLGDFEYELVREHIIKDGYRI 357
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR IRPIS +LPRAHGSALFTRGETQ+L TLG QRID+L + KR
Sbjct: 358 DGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETR-KR 416
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE AP RREIGHG LAERALE V+P DFPYTIR+ S I ESN
Sbjct: 417 FLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIRIVSDILESN 476
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCGG LA+ DAGVPIK +AG+AMG++ + G+G ILSDI G ED G
Sbjct: 477 GSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKE-----GEGIA-ILSDILGDEDHLG 530
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E G+TA QMDIK+ G+T +M+KAL QA+DGR HIL +M + P LS
Sbjct: 531 DMDFKVAGTEAGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKMNQAIAAPRTDLS 590
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I + VK +KI +IGSGGK ++ I E TGV +ID ED G + I + + +K+
Sbjct: 591 PYAPRITTIWVKTDKIRDVIGSGGKNIRGITEATGV-SIDIEDSGRINIASTSKEACDKA 649
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+I +LT G +Y +K + +G FVEI PG +GL HISEL + + DV+
Sbjct: 650 IKMIRDLTAEAEEGKLYMGT-VKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLN 708
Query: 811 VGDLVDVKLIEVNDKGQLRLSRR----ALLPE 838
GD V VK I ++ +G+++LSR+ A+LPE
Sbjct: 709 EGDKVLVKCIGIDKQGKIKLSRKEALGAVLPE 740
>gi|261253862|ref|ZP_05946435.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417953537|ref|ZP_12596582.1| polynucleotide phosphorylase/polyadenylase [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260937253|gb|EEX93242.1| polyribonucleotide nucleotidyltransferase [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342817138|gb|EGU52025.1| polynucleotide phosphorylase/polyadenylase [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 710
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/763 (39%), Positives = 438/763 (57%), Gaps = 61/763 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+ S+LDL++A
Sbjct: 122 NPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELATSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + + + P
Sbjct: 182 GTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVVISAINEFAAEVATPAWDWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + ++ +V +L
Sbjct: 242 ALVAKIAELAETKLVEAYQITEKMARYDRIHTIAAEVNEVL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L ED E + ++H +F ++ +RR I+
Sbjct: 283 -LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ++ TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG DGITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAATEGT 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAQEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALL---PEADAENPP 845
D + G V VK++E++ +G++RLS + + EA AE P
Sbjct: 664 SDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTEEAVAEEKP 706
>gi|424658516|ref|ZP_18095773.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-16]
gi|408055000|gb|EKG89954.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-16]
Length = 709
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/755 (40%), Positives = 429/755 (56%), Gaps = 58/755 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + +F++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + + V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISADVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + G V VK++E++ +G++RLS + + +D
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSD 698
>gi|228947527|ref|ZP_04109817.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228812047|gb|EEM58378.1| Polyribonucleotide nucleotidyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 712
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 446/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDAVLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|429770179|ref|ZP_19302257.1| polyribonucleotide nucleotidyltransferase [Brevundimonas diminuta
470-4]
gi|429185335|gb|EKY26318.1| polyribonucleotide nucleotidyltransferase [Brevundimonas diminuta
470-4]
Length = 742
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/743 (41%), Positives = 432/743 (58%), Gaps = 57/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + R + +ETG + RQA GAV T GET++ +V P DFFPL VNYQE+
Sbjct: 9 IEWAGRPLTLETGRIARQADGAVLATYGETVVLATVVYGRQPKPGLDFFPLTVNYQEKTF 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GG+FKREGR + E LV RLIDRP+RP +KGF +ETQ++ VL +D + PD
Sbjct: 69 AAGKIPGGYFKREGRPTEKETLVSRLIDRPIRPLFVKGFKNETQVIVTVLQHDLENDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
L + AA A+ +S VP I RVGL+ + ++NP +M +S LDL++AG+ DA++M
Sbjct: 129 LGMVAASAALTISGVPFMGPIGAARVGLIDGELVLNPAIDQMGESALDLVVAGTQDALMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E LSEE +++A+ ++ + + + L E K + D ++ ++
Sbjct: 189 VESEAKELSEEKMLEALMFAHAGMQPVIDAIIDLAEHAAK-EPFDFQAEDHSDVVASIKS 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+ GE++ K RR + + ++K L V DE
Sbjct: 248 LVGEDIKAAYAHPGKYERRSGVDAAKKKAAEAL-----VKTDE----------------- 285
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
KP+ S+ FS FKE + LRR I+E R DGR
Sbjct: 286 -----------------KPEGVDSSK--FSAA-----FKECEADVLRRDIIENSHRVDGR 321
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +R I S G+LPR HGS+LFTRGETQ+L V TLG + Q ID+L + + F L
Sbjct: 322 ALDKVRAIVSEVGVLPRTHGSSLFTRGETQALVVATLGTGEDEQYIDSLTGTYK-ESFLL 380
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LPS DFPYTIR+ S ITESNGSS
Sbjct: 381 HYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIRPMLPSREDFPYTIRLVSEITESNGSS 440
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLD-TDEFGGDGTPLILSDITGSEDASGDM 632
SMA+VCG LAL DAGVP+ ++G+AMG++L+ + EF ILSDI G ED GDM
Sbjct: 441 SMATVCGSSLALMDAGVPLARPVSGIAMGLILEPSGEFA------ILSDILGDEDHLGDM 494
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +GIT+ QMDIKV GIT +M++AL QA GR HIL EM K P L +
Sbjct: 495 DFKVAGTSEGITSLQMDIKVAGITKEIMQQALTQASAGRLHILDEMSKAMEAPRAELGEF 554
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I +K+ +KI +IGSGGK ++ I+E+TG + +D DDGT+KI A + +E +KA
Sbjct: 555 APKIESIKIAVDKIREVIGSGGKVIREIVEKTGAK-VDIGDDGTIKIAANEQEKIEAAKA 613
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I ++ P VG IY +K + +G FV ++GL H+S+++ +A DV+ G
Sbjct: 614 WIQSIASEPEVGTIYSGKVVK-VVDFGAFVNFFGAKDGLVHVSQIALERVANPADVLSEG 672
Query: 813 DLVDVKLIEVNDKGQLRLSRRAL 835
V VK + +D+G+ +LS + +
Sbjct: 673 QEVKVKFLGFDDRGKTKLSMKVV 695
>gi|422909161|ref|ZP_16943813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-09]
gi|341635751|gb|EGS60457.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HE-09]
Length = 709
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/748 (40%), Positives = 427/748 (57%), Gaps = 58/748 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + +F++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQFVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISADVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D + G V VK++E++ +G++RLS +
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|423511841|ref|ZP_17488372.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
gi|402450102|gb|EJV81936.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-1]
Length = 722
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 442/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A+S ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|163941544|ref|YP_001646428.1| polynucleotide phosphorylase/polyadenylase [Bacillus
weihenstephanensis KBAB4]
gi|229061410|ref|ZP_04198755.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|229134614|ref|ZP_04263424.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|423452892|ref|ZP_17429745.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|423518497|ref|ZP_17494978.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|423598882|ref|ZP_17574882.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|423669381|ref|ZP_17644410.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|423674440|ref|ZP_17649379.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
gi|226702619|sp|A9VT44.1|PNP_BACWK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|163863741|gb|ABY44800.1| Polyribonucleotide nucleotidyltransferase [Bacillus
weihenstephanensis KBAB4]
gi|228648875|gb|EEL04900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus
BDRD-ST196]
gi|228717833|gb|EEL69481.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH603]
gi|401139451|gb|EJQ47013.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X1-1]
gi|401160705|gb|EJQ68080.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA2-4]
gi|401237152|gb|EJR43609.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD078]
gi|401298508|gb|EJS04108.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM034]
gi|401309991|gb|EJS15324.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VDM062]
Length = 717
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 442/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A+S ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILNHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|334137204|ref|ZP_08510648.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF7]
gi|333605288|gb|EGL16658.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. HGF7]
Length = 701
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/747 (40%), Positives = 438/747 (58%), Gaps = 61/747 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQ 149
V++ R +++ETG + +QA+GAV G+T++ +C SEP D FFPL VNY+
Sbjct: 5 VQMDLAGRPLILETGRLAKQANGAVLARYGDTVV---LCTVTASSEPKDLDFFPLTVNYE 61
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER AAG+ GGF KREGR + +L RL DRP+RP +GF ++ QI++ V+S D
Sbjct: 62 ERLYAAGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQIVAVVMSVDQEC 121
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
P+ A+ A+++S+VP S + GV VG + F+VNPT + + S + L++AG+ D
Sbjct: 122 PPEITAMIGVSAALSISDVPFSGPVGGVIVGRIDGNFVVNPTPAQEDKSDVHLVVAGTKD 181
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
AI+M+E + E+++++A+ G D ++++ + LV G PKM + E+
Sbjct: 182 AIMMVEAGAAEVPEDVMLEAIMFGHDEIKKVIALQEQLVAEAGVPKMEVKLHTVDGEINT 241
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V E A LV+ ++++ K R++A+ ++ + + + E P+ L+
Sbjct: 242 AVREFAEARLVEAIKVQEKHARQEAIDAVNADAVAHFT-----------ALYEATPEKLK 290
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D VK V ++ +RR I R
Sbjct: 291 D------------------------------------VKEVLHDIVKDEVRRLITHDKVR 314
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR D IRPI LLPR HGS LFTRG+TQ+L+V TLG Q +D L+ + E K
Sbjct: 315 PDGRALDEIRPIDVDINLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGLDLE-ETK 373
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF Y+FPP SVGE + P RREIGHG L ERAL V+PS+ +FPYTIR+ S + ES
Sbjct: 374 RFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALSYVIPSEAEFPYTIRLVSEVLES 433
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSS AS+C LA+ DAGVPIK +AG+AMG++ + + F IL+DI G ED
Sbjct: 434 NGSSSQASICASTLAMMDAGVPIKAPVAGIAMGLIKEGEHFS------ILTDIQGMEDHL 487
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG G+TA QMDIK+ GI ++K+AL QAK GR I+ +ML+ P L
Sbjct: 488 GDMDFKVAGTSKGVTALQMDIKIDGINRDILKQALDQAKAGRTFIMNKMLERISEPKKEL 547
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S +AP I +M++ P+KI +IG+GGK + IIEETGV+ ID E DG V I + + E+
Sbjct: 548 SAYAPKIVVMQINPDKIRDVIGAGGKIINKIIEETGVK-IDIEQDGKVFIASSNAEMNER 606
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+K II + VG+ Y +K + +G FVE+ PG+EGL HIS+LS+ +AK EDVV
Sbjct: 607 AKQIIEGIVRDVVVGETYLGT-VKRVEKFGAFVEVLPGKEGLVHISQLSTERVAKVEDVV 665
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
KVGD + VK+ E++++G++ LSR+A L
Sbjct: 666 KVGDTITVKVTEIDNQGRVNLSRKATL 692
>gi|238761771|ref|ZP_04622745.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
gi|238699885|gb|EEP92628.1| hypothetical protein ykris0001_12970 [Yersinia kristensenii ATCC
33638]
Length = 706
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/744 (41%), Positives = 430/744 (57%), Gaps = 60/744 (8%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ K +G + +ETG M RQA+ AV V+ +T ++ +V FFPL VNY
Sbjct: 4 PIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNY 63
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAGR G FF+REGR + E L RLIDRP+RP F +E Q+++ V+S +
Sbjct: 64 QERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQ 123
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD +A+ A A++LS +P + I RVG + D++++NPTT E+++S+LDL++AG+
Sbjct: 124 VNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVAGTA 183
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-L 327
A+LM+E LSE+ ++ AV G + + + + ALV GKPK D P E L
Sbjct: 184 AAVLMVESEAQILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKW-DWHAEPVNEAL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ V E+A L +I K R + +++ V L +++D+T+ D
Sbjct: 243 HARVAELAAARLGDAYRITEKQERYTQVDAIKADVTEAL-----LAQDDTL-------DA 290
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E +D + V +R R++ G
Sbjct: 291 SEIQD-------------------------------------ILGSVEKNVVRSRVLAGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR + R G+LPR HGSALFTRGETQ+L TLG + AQ ID L +
Sbjct: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGE-R 372
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S IT
Sbjct: 373 TDSFLLHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYTVRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + + F ++LSDI G ED
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENF------VVLSDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG+ DGITA QMDIK+ GIT +M+ AL QAK R HIL M + P
Sbjct: 487 HLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRG 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S+ AP I+ MK+ PEKI +IG GG ++++ +ETG I+ EDDGT+KI A D
Sbjct: 547 DISEFAPRIYTMKINPEKIKDVIGKGGSVIRALTDETGT-TIEIEDDGTIKIAATDGDKA 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I +T V IY ++ I +G FV I G+EGL HIS+++ + K D
Sbjct: 606 KHAIRRIEEITAEIEVNRIYAG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
+++G V VK++EV+ +G++RLS
Sbjct: 665 YLQMGQEVPVKVMEVDRQGRIRLS 688
>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
TCF52B]
gi|257096711|sp|B7IE23.1|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
TCF52B]
Length = 697
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/743 (41%), Positives = 445/743 (59%), Gaps = 64/743 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
FG R+++V+ G + +Q++G+V V G++++ + ++D E DF PL V YQE+F AA
Sbjct: 11 FG-RKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREG+ + +L RLIDRP+RP K ++ Q++ VLS DG PD
Sbjct: 70 GKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPDVTG 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ AA +A+ +S++P ++AGVR+G V KF+V PT +++E S+LD+++AGS DAI M+E
Sbjct: 130 IIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKDAITMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE---LYKHVE 332
G ++EE ++ A+ V DA+++I + ++ KM I+ P P + K E
Sbjct: 190 GEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKM--EIEEPKPNETLIGKFEE 247
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
I+ EEL L IK K+ R L +++L E I + +E ED
Sbjct: 248 MISEEELRDKLLIKEKLERSAKLKEYRDQIL------------------EKIFEDVEMED 289
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
+++ + E +K F E T K +R+ I+E G R+DG
Sbjct: 290 DEK-------------------------ILQESLLKEYFDERTKKLMRKIIIEEGIRADG 324
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R D IRPI+ G+LPR HGSALFTRGETQSL ++TLG Q +D + ++ KRF
Sbjct: 325 RKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTI-MEEGTKRFI 383
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGEV + P RREIGHG LAERAL+ V+PS+ +FPY +RV S I ESNGS
Sbjct: 384 LHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVVPSEEEFPYVVRVVSEILESNGS 443
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VC G LAL DAGVPI+ +AGVAMG++++ DG ++L+DI G ED GDM
Sbjct: 444 SSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIE------DGQEVVLTDIQGLEDHWGDM 497
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +GITAFQMD KV G+ ++K+ALQQAK+ R IL M P SLS +
Sbjct: 498 DFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIMFNTIEKPRESLSPY 557
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
APLI +++ P K+ +IG GGK +KSII+E VE + G V I KD + ++
Sbjct: 558 APLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDDTTGKVSIYGKDQKKVNEAIE 617
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISEL---SSNWLAKAEDVV 809
I +T VGD++ +I I PYG+FVE+ PG+ GL H S+L S N+ K
Sbjct: 618 YIKTITKDIEVGDVFEG-KITRIEPYGIFVELMPGKIGLAHSSKLGEDSKNFKEK----Y 672
Query: 810 KVGDLVDVKLIEVNDKGQLRLSR 832
K+GD + V ++ +++ G+++L +
Sbjct: 673 KIGDTIKVIVVNIDENGRIQLGK 695
>gi|15640667|ref|NP_230296.1| polynucleotide phosphorylase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121587861|ref|ZP_01677618.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
gi|153802011|ref|ZP_01956597.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
gi|153818691|ref|ZP_01971358.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
8457]
gi|153822539|ref|ZP_01975206.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|227080828|ref|YP_002809379.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae M66-2]
gi|229505731|ref|ZP_04395241.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
330286]
gi|229509236|ref|ZP_04398721.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|229519556|ref|ZP_04408999.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
gi|229608842|ref|YP_002879490.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae
MJ-1236]
gi|254850881|ref|ZP_05240231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
gi|255744136|ref|ZP_05418089.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262156112|ref|ZP_06029231.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
91/1]
gi|298500763|ref|ZP_07010566.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
gi|360034463|ref|YP_004936226.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740506|ref|YP_005332475.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae IEC224]
gi|417812609|ref|ZP_12459269.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-49A2]
gi|417815472|ref|ZP_12462106.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HCUF01]
gi|418331615|ref|ZP_12942557.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-06A1]
gi|418336490|ref|ZP_12945389.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-23A1]
gi|418342872|ref|ZP_12949668.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-28A1]
gi|418348033|ref|ZP_12952769.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43A1]
gi|418354475|ref|ZP_12957198.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A1]
gi|419825115|ref|ZP_14348621.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1033(6)]
gi|421315882|ref|ZP_15766454.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1032(5)]
gi|421319414|ref|ZP_15769973.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1038(11)]
gi|421323461|ref|ZP_15773990.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1041(14)]
gi|421327866|ref|ZP_15778382.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1042(15)]
gi|421330873|ref|ZP_15781355.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1046(19)]
gi|421334455|ref|ZP_15784924.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1048(21)]
gi|421338353|ref|ZP_15788790.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-20A2]
gi|421346681|ref|ZP_15797064.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46A1]
gi|422890687|ref|ZP_16933100.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-40A1]
gi|422901555|ref|ZP_16936919.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48A1]
gi|422905773|ref|ZP_16940619.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-70A1]
gi|422912371|ref|ZP_16946898.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HFU-02]
gi|422924853|ref|ZP_16957884.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-38A1]
gi|423144174|ref|ZP_17131789.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-19A1]
gi|423148878|ref|ZP_17136238.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-21A1]
gi|423152669|ref|ZP_17139868.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-22A1]
gi|423155451|ref|ZP_17142588.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-32A1]
gi|423159314|ref|ZP_17146287.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-33A2]
gi|423163999|ref|ZP_17150787.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48B2]
gi|423730125|ref|ZP_17703444.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A1]
gi|423748289|ref|ZP_17711523.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A2]
gi|423891846|ref|ZP_17725534.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62A1]
gi|423926620|ref|ZP_17730149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-77A1]
gi|424001177|ref|ZP_17744267.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A2]
gi|424005335|ref|ZP_17748320.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-37A1]
gi|424023344|ref|ZP_17763009.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62B1]
gi|424026147|ref|ZP_17765764.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-69A1]
gi|424585552|ref|ZP_18025146.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1030(3)]
gi|424594169|ref|ZP_18033508.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1040(13)]
gi|424600867|ref|ZP_18040024.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1047(20)]
gi|424651780|ref|ZP_18089305.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A2]
gi|429887878|ref|ZP_19369383.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae PS15]
gi|440708851|ref|ZP_20889511.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 4260B]
gi|443502675|ref|ZP_21069665.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-64A1]
gi|443506589|ref|ZP_21073380.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-65A1]
gi|443510695|ref|ZP_21077360.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-67A1]
gi|443514255|ref|ZP_21080795.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-68A1]
gi|443518070|ref|ZP_21084488.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-71A1]
gi|443522937|ref|ZP_21089178.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-72A2]
gi|443530555|ref|ZP_21096571.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-7A1]
gi|443534330|ref|ZP_21100243.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-80A1]
gi|443537906|ref|ZP_21103763.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-81A1]
gi|449054130|ref|ZP_21732798.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1 str.
Inaba G4222]
gi|81545361|sp|Q9KU76.1|PNP_VIBCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782745|sp|C3LSQ2.1|PNP_VIBCM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|9655083|gb|AAF93813.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547897|gb|EAX57981.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 2740-80]
gi|124122470|gb|EAY41213.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MZO-3]
gi|126510771|gb|EAZ73365.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae NCTC
8457]
gi|126519957|gb|EAZ77180.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|227008716|gb|ACP04928.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae M66-2]
gi|229344245|gb|EEO09220.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae RC9]
gi|229353808|gb|EEO18744.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae B33]
gi|229357954|gb|EEO22871.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae BX
330286]
gi|229371497|gb|ACQ61920.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MJ-1236]
gi|254846586|gb|EET25000.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MO10]
gi|255738076|gb|EET93468.1| polyribonucleotide nucleotidyltransferase [Vibrio cholera CIRS 101]
gi|262030148|gb|EEY48793.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae INDRE
91/1]
gi|297540544|gb|EFH76602.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae MAK 757]
gi|340043458|gb|EGR04417.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HCUF01]
gi|340043989|gb|EGR04946.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-49A2]
gi|341625121|gb|EGS50590.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-70A1]
gi|341626210|gb|EGS51612.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48A1]
gi|341626882|gb|EGS52225.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-40A1]
gi|341640937|gb|EGS65512.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HFU-02]
gi|341648480|gb|EGS72540.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-38A1]
gi|356420642|gb|EHH74161.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-06A1]
gi|356421502|gb|EHH75003.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-21A1]
gi|356426125|gb|EHH79459.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-19A1]
gi|356433271|gb|EHH86464.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-23A1]
gi|356434452|gb|EHH87631.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-22A1]
gi|356437917|gb|EHH90988.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-28A1]
gi|356443118|gb|EHH95950.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-32A1]
gi|356448144|gb|EHI00929.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-43A1]
gi|356450151|gb|EHI02883.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-33A2]
gi|356453887|gb|EHI06545.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-61A1]
gi|356456291|gb|EHI08899.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-48B2]
gi|356645617|gb|AET25672.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794016|gb|AFC57487.1| polynucleotide phosphorylase/polyadenylase [Vibrio cholerae IEC224]
gi|395922623|gb|EJH33439.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1032(5)]
gi|395923306|gb|EJH34118.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1041(14)]
gi|395925739|gb|EJH36536.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1038(11)]
gi|395931600|gb|EJH42345.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1042(15)]
gi|395934726|gb|EJH45464.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1046(19)]
gi|395937564|gb|EJH48278.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1048(21)]
gi|395945305|gb|EJH55974.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-20A2]
gi|395946829|gb|EJH57489.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-46A1]
gi|395963763|gb|EJH74020.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-57A2]
gi|395977398|gb|EJH86808.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1030(3)]
gi|395979087|gb|EJH88451.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1047(20)]
gi|408037147|gb|EKG73553.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1040(13)]
gi|408611386|gb|EKK84747.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae
CP1033(6)]
gi|408627336|gb|EKL00152.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A1]
gi|408640853|gb|EKL12636.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-50A2]
gi|408658689|gb|EKL29755.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-77A1]
gi|408659350|gb|EKL30401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62A1]
gi|408848350|gb|EKL88399.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-37A1]
gi|408849175|gb|EKL89205.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-17A2]
gi|408873533|gb|EKM12730.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-62B1]
gi|408881306|gb|EKM20210.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-69A1]
gi|429225046|gb|EKY31332.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae PS15]
gi|439975592|gb|ELP51704.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae 4260B]
gi|443433066|gb|ELS75586.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-64A1]
gi|443436855|gb|ELS82971.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-65A1]
gi|443440417|gb|ELS90105.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-67A1]
gi|443444512|gb|ELS97785.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-68A1]
gi|443448348|gb|ELT04982.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-71A1]
gi|443451123|gb|ELT11386.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-72A2]
gi|443458756|gb|ELT26151.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-7A1]
gi|443462488|gb|ELT33526.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-80A1]
gi|443466731|gb|ELT41388.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HC-81A1]
gi|448266387|gb|EMB03614.1| Polyribonucleotide nucleotidyltransferase [Vibrio cholerae O1 str.
Inaba G4222]
Length = 709
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/755 (40%), Positives = 430/755 (56%), Gaps = 58/755 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + + +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHEISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
D + G V VK++E++ +G++RLS + + +D
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVETSD 698
>gi|30263811|ref|NP_846188.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Ames]
gi|47529234|ref|YP_020583.1| polynucleotide phosphorylase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186657|ref|YP_029909.1| polynucleotide phosphorylase [Bacillus anthracis str. Sterne]
gi|65321134|ref|ZP_00394093.1| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Bacillus anthracis str. A2012]
gi|170706809|ref|ZP_02897267.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229603609|ref|YP_002868046.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A0248]
gi|254759341|ref|ZP_05211366.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
Australia 94]
gi|81583685|sp|Q81WM8.1|PNP_BACAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|254782703|sp|C3P5L0.1|PNP_BACAA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|30258455|gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Ames]
gi|47504382|gb|AAT33058.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
'Ames Ancestor']
gi|49180584|gb|AAT55960.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
Sterne]
gi|170128227|gb|EDS97096.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0389]
gi|229268017|gb|ACQ49654.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str.
A0248]
Length = 712
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q+++ V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|418517280|ref|ZP_13083445.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
gi|410706006|gb|EKQ64471.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
Length = 704
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/742 (41%), Positives = 447/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + E + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPS--DWVAPAKNESMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLAKEFGELEYQTMRGSVLSSKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+P+ +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|423483397|ref|ZP_17460087.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
gi|401140948|gb|EJQ48503.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-2]
Length = 717
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 440/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI--------------------------EHYE 282
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+EV D T SE+ K+V +EV RR I R DGR
Sbjct: 283 AQEVDAD-----------------TLGQVSEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|187471095|sp|Q0A7A1.2|PNP_ALHEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
Length = 698
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 299/744 (40%), Positives = 437/744 (58%), Gaps = 63/744 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G+ + +ETG + RQA GAV V +T++ + FFPL VNYQER AA
Sbjct: 10 YGNHTVTLETGGVARQADGAVLVNMSDTVVLVTAVGRKEADPGKGFFPLTVNYQERTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKREGR + E L CRLIDRP+RP +GFY+E Q+++ VLS + D A
Sbjct: 70 GKIPGGFFKREGRPSEKETLTCRLIDRPIRPLFPEGFYNEVQVVATVLSMNPEVDADIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+++S +P I RVG ++++NPT +E S LDL++AG+++A+LM+E
Sbjct: 130 LIGASAALSISGIPFDGPIGAARVGYKDGEYLLNPTFEETAASDLDLVVAGTENAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----LYKHV 331
+ L EE ++ AV G + ++ + L GKP+ PP+ L +
Sbjct: 190 SEANQLPEEAMLGAVLYGHEQMQVAIQAINELTAEAGKPRW----DWHPPQGDAALETAI 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+++ G++L QI K R+ + L ++ + L EN ++E G
Sbjct: 246 KDLVGDDLAAAYQIPEKQERQNRIGELRQRAVEALGEN----REEEGG------------ 289
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+ E DV FK + +R RI+ G RR D
Sbjct: 290 ------------------------------WPEKDVGDAFKGLEKDIVRGRILAGERRID 319
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI G LPR HGSA+FTRGETQ++ V TLG + AQ ID +E + + ++F
Sbjct: 320 GRDTRTVRPIDIEVGSLPRTHGSAIFTRGETQAVVVTTLGTGRDAQIIDAIEGERK-EQF 378
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP VGE G +G P RREIGHG LA+R +E V+P+ +D PY IRV S ITESNG
Sbjct: 379 MLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIEAVMPAADDCPYVIRVVSEITESNG 438
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG L+L DAGVP+K +AG+AMG++ + ++F +LSDI G ED GD
Sbjct: 439 SSSMATVCGTSLSLMDAGVPVKAPVAGIAMGLIKEDEQFA------VLSDILGDEDHLGD 492
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E G+TA QMDIK+ GIT +M++AL+QA++GR HIL EM P + +S+
Sbjct: 493 MDFKVAGTESGVTALQMDIKIQGITREIMEQALEQAREGRLHILGEMNNAISGPRSEMSE 552
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP + +++ P+KI +IG GG ++++ EETG ID DDG V I + D ++ ++++
Sbjct: 553 YAPRLLTIRIDPDKIRDVIGKGGATIRALTEETGT-TIDISDDGKVTIASADKAAADEAR 611
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I LT VG +Y ++ + +G FV I PGR+GL HIS++S+ + + D +K
Sbjct: 612 RRIELLTADVEVGTVYEG-KVSKLMDFGAFVNILPGRDGLVHISQISNERVERVGDYLKE 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRAL 835
GD V VK++EV+ +G++RLS +A+
Sbjct: 671 GDTVRVKVLEVDRQGRIRLSMKAV 694
>gi|312143658|ref|YP_003995104.1| polyribonucleotide nucleotidyltransferase [Halanaerobium
hydrogeniformans]
gi|311904309|gb|ADQ14750.1| polyribonucleotide nucleotidyltransferase [Halanaerobium
hydrogeniformans]
Length = 696
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 297/732 (40%), Positives = 447/732 (61%), Gaps = 59/732 (8%)
Query: 103 VETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGF 162
+ETG + +QA+G+V V G++ + + + D P ++FPL VNY+ER A G+ GG
Sbjct: 15 IETGKLAKQANGSVMVRSGDSQVLVTATM-DEPRPGMNYFPLMVNYEERVYAIGKIPGGV 73
Query: 163 FKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIA 222
+REGR +D L R+IDR +RP G+ + Q+++ +LS D H P+ LA+ A IA
Sbjct: 74 LRREGRPRDEATLAARVIDRSIRPLFPDGYRKDVQVVATILSVDDDHDPEMLALNGASIA 133
Query: 223 VALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLS 282
+ +S++P I GV+VGLV + I+NP +E E+S+LDL++AGS DAI+M+E + +
Sbjct: 134 LTISDIPFDGPIGGVKVGLVDGEIIINPNEEERENSELDLVVAGSKDAIMMVEASANEVE 193
Query: 283 EEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKV 342
E ++++A+ + ++++ K + E GK K + EL + VEE+ G+ L +
Sbjct: 194 EAVILEAMDLAHQEIQKMIKIQKTIREEAGKEKEVFIEPTVDDELAEKVEELLGDRLKEA 253
Query: 343 LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGE 402
+QI+ K R + ++SL+ + L EN L DEDED +D +
Sbjct: 254 IQIQKKQARGEKIASLKAE----LKEN-----------------LNPDEDED----IDSQ 288
Query: 403 VDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPIS 462
++ L F+ + K ++ I++ G R DGR D IRPI
Sbjct: 289 LN------------------------LAFENMIKKSVKSLIIDDGIRPDGREHDEIRPIW 324
Query: 463 SRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSV 522
+ G++PR+HGS +FTRGETQ+L+V+TLG Q + L + E KR+ Y+FP V
Sbjct: 325 AEVGVVPRSHGSGVFTRGETQALSVLTLGASSDEQILFGL-GEKETKRYMHHYNFPSFCV 383
Query: 523 GEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGC 582
GE + +P RREIGHGTL E+AL PV+P +DFPYTIR+ S + ESNGSSS AS+CG
Sbjct: 384 GETSPMRSPGRREIGHGTLGEKALLPVIPEKDDFPYTIRIVSEVLESNGSSSQASICGST 443
Query: 583 LALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDG 642
L+L DAGVPIK ++G+AMG++ DE ++LSDI G ED GDMDFKVAG E+G
Sbjct: 444 LSLMDAGVPIKAPVSGIAMGLMKKDDEI------VVLSDIQGFEDFHGDMDFKVAGTENG 497
Query: 643 ITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVK 702
+TA QMD+K+ G++ V+++AL +AK GR HI+ +ML+ P LSK+AP + MK+
Sbjct: 498 VTALQMDMKLKGLSKDVLEEALNKAKKGRMHIMEKMLEVIAEPRPELSKNAPALISMKIN 557
Query: 703 PEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPT 762
PEKI +IG GGK + II++TG + ID +DDGTV I D S +++K ++ NLT
Sbjct: 558 PEKIRFVIGPGGKTINEIIDKTGAQ-IDIDDDGTVMILTDDQESGKEAKKMVENLTKEVE 616
Query: 763 VGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEV 822
VG+IY+ +K I +G FVEI P +EGL HIS+++ + + DV+ VGD + VK+IE+
Sbjct: 617 VGEIYQGT-VKRIMNFGAFVEILPNKEGLVHISKIADRHIKEVSDVLSVGDEIPVKVIEI 675
Query: 823 NDKGQLRLSRRA 834
+++ ++ LS +A
Sbjct: 676 DNQDRINLSLKA 687
>gi|406942173|gb|EKD74471.1| hypothetical protein ACD_44C00432G0005 [uncultured bacterium]
Length = 698
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/750 (41%), Positives = 441/750 (58%), Gaps = 56/750 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEPSDFFPLNV 146
+P ++ +G + ETG + +QA+ AVTV D ++ T V A V ++ DFFPL V
Sbjct: 2 KPSTISFQYGAHTVTFETGEIAKQATAAVTVKMDDTVVLVTVVVSAKVGTQ--DFFPLTV 59
Query: 147 NYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYD 206
YQER AAGR GG+FKREGR + E L RLIDRPLRP +GF +E QI++ VLS D
Sbjct: 60 VYQERSYAAGRIPGGYFKREGRPTEKETLTSRLIDRPLRPLFPEGFNNEVQIIATVLSAD 119
Query: 207 GLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAG 266
PD A+ A A+ LS +P I R+G + +++NP++ +++ S LDL++AG
Sbjct: 120 KNVDPDVPAMLGASCALYLSGIPFGGPIGAARIGYIDGAYVLNPSSTQLQQSALDLVVAG 179
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+D A+LM+E LSEE+++ AV +G + ++ + +K L E G+ L
Sbjct: 180 TDKAVLMVESQAKELSEEVMLGAVLLGHEKMQTAIDAIKKLAETAGRGTWLWEALAHDEA 239
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L V E+ + L QI+ K R + L L+E+ + L V+T D
Sbjct: 240 LKTKVSELIEKPLHDAFQIQEKASRGEKLGELKERAVKAL--------------VDTNLD 285
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+ E + E +K + ++ + LR R+++G
Sbjct: 286 MAEQAKQVE------------------------------TIKKIVSDLEYQVLRERVLQG 315
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RPI+ R +LPR HGSALFTRGETQ+L V+TLG + AQ ID LE +
Sbjct: 316 LPRVDGRDTKTVRPITIRTNVLPRTHGSALFTRGETQALVVVTLGTGRDAQMIDALEGEM 375
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
+ F Y+FPP SVGE+G++G+P RREIGHG LA+RA+ +LPS F Y +RV S I
Sbjct: 376 K-DSFMFHYNFPPYSVGEIGQVGSPKRREIGHGRLAKRAILALLPSQEAFSYVMRVVSEI 434
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVPIK ++AG+AMG+V + ++F ++LSDI G E
Sbjct: 435 TESNGSSSMASVCGSSLALMDAGVPIKAAVAGIAMGLVKEGEKF------VVLSDILGDE 488
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG G+TA QMDIK+ GIT +MK AL QAK+GR HIL M + P P
Sbjct: 489 DHLGDMDFKVAGTSAGVTALQMDIKINGITAEIMKLALAQAKEGRLHILNIMNQALPAPR 548
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
++S AP I +K+ PEKI +IG GG ++++ EETG I+ DDG VKI + D +
Sbjct: 549 ENMSDFAPRIITIKINPEKIRDVIGKGGSVIRALTEETGA-TIEVTDDGIVKIASVDREA 607
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
E++ I +T VG IY + I +G F+ + PG++GL HIS+++ +A
Sbjct: 608 GEEACRRIKQITAEVEVGKIYEGT-VTKIVEFGAFINLLPGKDGLLHISQITQQRVANVN 666
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
DV+ G +V VK+++V+ +G+++LS + L+
Sbjct: 667 DVLSEGQVVRVKVLDVDRQGKVKLSMKDLI 696
>gi|339009431|ref|ZP_08642003.1| polyribonucleotide nucleotidyltransferase [Brevibacillus
laterosporus LMG 15441]
gi|421872744|ref|ZP_16304361.1| polyribonucleotide nucleotidyltransferase [Brevibacillus
laterosporus GI-9]
gi|338773909|gb|EGP33440.1| polyribonucleotide nucleotidyltransferase [Brevibacillus
laterosporus LMG 15441]
gi|372458159|emb|CCF13910.1| polyribonucleotide nucleotidyltransferase [Brevibacillus
laterosporus GI-9]
Length = 706
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 310/746 (41%), Positives = 443/746 (59%), Gaps = 58/746 (7%)
Query: 99 RQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRT 158
R++ +E G + +QA G+V V G+T I ++V ++ P + DFFPL VNY+ER A G+
Sbjct: 15 RKLTLEFGKVAKQAQGSVLVRYGDTTILSAVTVSKEPKD-LDFFPLTVNYEERLYAVGKI 73
Query: 159 SGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTA 218
GGF KREGR + +L RLIDRP+RP ++GF ++ Q+++ VLS D + A+
Sbjct: 74 PGGFIKREGRPSERAILASRLIDRPIRPLFLEGFRNDVQVVNTVLSVDQDCSTEIAAMIG 133
Query: 219 AGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYC 278
A++ SE+P + IAGV VG + KFI+NPT E E S + L++AG+ DAI M+E
Sbjct: 134 TSAALSTSEIPFNGPIAGVIVGRIDGKFIINPTIAEQEKSDIHLVVAGTMDAINMVEAGA 193
Query: 279 DFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEE 338
+ EE++++A+ G D +++I +V GK KM + E+ + V A +
Sbjct: 194 KEVPEEIMLEAIMYGHDHIKKIVAFQNDIVAEIGKQKMEVVLHSVDEEVDQAVRAFADAK 253
Query: 339 LVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVV 398
+ + ++++ K R +A+ +++E+ V E P+
Sbjct: 254 IREAVRVEEKHARAEAIDAVKEET--------------QVHFAEVYPE------------ 287
Query: 399 VDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGI 458
EG++ SE+ +V +EV RR I R DGR I
Sbjct: 288 -----REGEI--------------SEILYDMVKEEV-----RRLITHEKIRPDGRALTEI 323
Query: 459 RPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFP 518
RP+SS G+LPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF Y+FP
Sbjct: 324 RPLSSEVGILPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL-GLEETKRFMHHYNFP 382
Query: 519 PSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASV 578
P SVGE + P RREIGHG L ERA+EP++PS+ +FPYTIR+ S + ESNGS+S AS+
Sbjct: 383 PYSVGEARPLRPPGRREIGHGALGERAIEPIIPSEVEFPYTIRLVSEVIESNGSTSQASI 442
Query: 579 CGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG 638
CG LAL DAGVPIK +AG+AMG+++DTD G+ IL+DI G ED GDMDFKVAG
Sbjct: 443 CGSVLALMDAGVPIKAPVAGIAMGLIMDTD---GEHFS-ILTDIQGMEDHLGDMDFKVAG 498
Query: 639 NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHI 698
+G+TA QMDIK+ GI ++++AL QAK+GR HIL ML P + LS +AP I
Sbjct: 499 TAEGVTALQMDIKIEGINREILEQALTQAKEGRMHILESMLATINAPRDHLSPYAPKIMT 558
Query: 699 MKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758
M + PEKI +IG G+ + IIEETGV+ ID E DG + I + D + ++K II +L
Sbjct: 559 MSINPEKIRDVIGPQGRVINKIIEETGVK-IDIEQDGRIFIASTDADANLRAKQIIEDLV 617
Query: 759 MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVK 818
VG Y +K + YG F+E+ G+EGLCHIS+L+ +AK EDVV VGD + VK
Sbjct: 618 REVEVGQTYLGT-VKRVEKYGAFIELFAGKEGLCHISQLAEERVAKTEDVVSVGDKILVK 676
Query: 819 LIEVNDKGQLRLSRRALLPEADAENP 844
+ E++D+G++ +SR+A+L E P
Sbjct: 677 VTEIDDQGRVNISRKAVLKEQAQAAP 702
>gi|424047590|ref|ZP_17785149.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-03]
gi|408883828|gb|EKM22595.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae HENC-03]
Length = 710
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/748 (40%), Positives = 431/748 (57%), Gaps = 58/748 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + N + P
Sbjct: 182 GTESAVLMVESEADNLTEEEMLSAVVYGHDQQQTVINAINEFAAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + + +V +L
Sbjct: 242 ALVNKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L ED E + ++H +F ++ +RR I+
Sbjct: 283 -LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAATEGA 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY ++ +A +G FV + PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTVLPGKDGLVHISQIAEKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D + G V VK++E++ +G++RLS +
Sbjct: 664 SDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|297184037|gb|ADI20157.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L06A09]
Length = 709
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/760 (40%), Positives = 435/760 (57%), Gaps = 69/760 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V I +G+ + +ETG + RQA V T GET + +VC A E FFPL VNYQ
Sbjct: 5 VKKSIKWGEETLTLETGKIARQADSTVIATYGETSVLAAVCFAKKEKEGQSFFPLTVNYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP I GF HE QI VLS+D ++
Sbjct: 65 EKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFIPGFKHEVQITLTVLSHDLVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME------DSQLDLL 263
PD +A+ AA A+ LS P I RVG G ++++NPT +M D +LDL+
Sbjct: 125 DPDMVAMIAASAALTLSGAPFMGPIGNCRVGFEGGQYVLNPTCDDMHELKNNPDQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E L+EE ++ A+ + ++ + + + + E D
Sbjct: 185 VAGTKDAVMMVESEAYELTEEEMLGAINFAHEQIQPVIDMIIDMAEEAANEP-FDYQSPD 243
Query: 324 PPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVET 383
ELY V+ + + + +K R A+S+ ++ ++ LS
Sbjct: 244 YSELYSAVKAQGEDNIRSAYALTDKQERTSAVSAAKDSIIDALS---------------- 287
Query: 384 IPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRI 443
ED+ S+ + K++ S+ +R I
Sbjct: 288 ---------EDQ--------------------------VSDPNFGTCLKKLESEVVRGDI 312
Query: 444 VEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLE 503
V+ G+R DGR +RPI S +LPR HGSALFTRGETQ+LAV TLG Q ID L
Sbjct: 313 VKTGKRIDGRDLSTVRPIISETAVLPRTHGSALFTRGETQALAVTTLGTGDDEQMIDAL- 371
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
S F L Y+FPP SVGE GR+ P RREIGHG LA RAL+ VLP +FPYTIR+
Sbjct: 372 SGTYRSNFLLHYNFPPYSVGECGRMMGPGRREIGHGKLAWRALQAVLPPATEFPYTIRMV 431
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL-DTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCGG L++ DAGVP++ +AGVAMG++L D+ E+ +L+DI
Sbjct: 432 SEITESNGSSSMASVCGGSLSMMDAGVPLRAPVAGVAMGLILQDSGEYA------VLTDI 485
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG E+GIT+ QMDIKV GIT +M+KA+ QAKDGR HIL EM +
Sbjct: 486 LGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKAMAQAKDGRLHILGEMAN-A 544
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
+ S S+HAP I +K+ PEKI +IGSGGK ++ I E +G + ++ +D+G +KI +
Sbjct: 545 LTEAGSFSEHAPRIETIKINPEKIREVIGSGGKVIREICEVSGAK-VNIDDEGVIKIASS 603
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
+ +EK+K +I + P VG IY +K + +G FV R+GL H+S++++ +
Sbjct: 604 NGEQIEKAKEMIMEIAAEPEVGVIYTGTVVK-VMDFGAFVNFFGKRDGLVHVSQMANERV 662
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D+VK G V VKL+ +D+G++RLS + + E E
Sbjct: 663 NHPSDLVKEGQKVKVKLMGFDDRGKVRLSMKVIDQETGEE 702
>gi|423612024|ref|ZP_17587885.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
gi|401247031|gb|EJR53375.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD107]
Length = 717
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/743 (40%), Positives = 445/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K+ + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEKIVQAVGKEKIAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A++ ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+++E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQINE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|358053039|ref|ZP_09146832.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus simiae
CCM 7213]
gi|357257469|gb|EHJ07733.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus simiae
CCM 7213]
Length = 699
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/748 (40%), Positives = 453/748 (60%), Gaps = 65/748 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
K + R + +ETG + +QA+GAV V G+T++ ++ + P + DFFPL VNY+E+
Sbjct: 9 KTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRD-GDFFPLTVNYEEKM 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGF KREGR D L RLIDRP+RP KG+ H+ QI++ VLS D P
Sbjct: 68 YAAGKIPGGFKKREGRPGDDATLTARLIDRPIRPLFPKGYKHDVQIMNIVLSADPDCSPQ 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ + +A+++S++P IAGV VG V K+++NPT + E S+LDL +AG DA+
Sbjct: 128 MAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGKYVINPTVADKEVSRLDLEVAGHKDAVN 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E ++E +++A+ G E++ LVE + +++D H++
Sbjct: 188 MVEAGASEITESEMLEAIFFGH-------QEIQRLVEF--QQQIID-----------HIQ 227
Query: 333 EIAGEELVKVLQIKNKIPRRKALSS---LEEKVLTILSENGYVSKDETVGIV--ETIPDL 387
+ E + V + + + R AL+ L++ VLT + +D+ + + + + +
Sbjct: 228 PVKS-EFIPVERDEALVERITALTEQKGLKDAVLTFDKQQ----RDDNLDAIRDDIVAEF 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+ +ED D E+++ +V + ++ + +R+ I E
Sbjct: 283 INEEDPDNELLIK-------------------------EVNSIINDLIKEQVRQLIAEDK 317
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IRP+ S GLLPRAHGS LFTRG+TQ+L+V+TLG Q ID + ++E
Sbjct: 318 VRPDGRKPDEIRPLDSEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGIGPEEE 377
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRF Y+FP SVGE G + AP RREIGHG L ERAL+ ++P DFPYT+R+ S +
Sbjct: 378 -KRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIPDIADFPYTVRIVSEVL 436
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSS AS+CG LAL DAGVPIK +AG+AMG+V D + IL+DI G ED
Sbjct: 437 ESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSY------TILTDIQGMED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
A GDMDFKVAG ++GITA QMDIK+ G+T ++++AL+QA+ GR I+ ML+ P +
Sbjct: 491 ALGDMDFKVAGTKEGITAIQMDIKINGLTREIIEEALEQARRGRLEIMDHMLQTIDQPRS 550
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS +AP + M +KPEKI +IG GGKK+ II+ETGV+ +D E DGT+ I A D +
Sbjct: 551 ELSAYAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVK-LDIEQDGTIFIGAVDQDMI 609
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+++ II ++T VG +Y N +++ I YG FVE+ PG++ L HIS++S + + K ED
Sbjct: 610 NRAREIIEDITREAEVGQVY-NAKVRRIEKYGAFVELFPGKDALLHISQISKDRINKVED 668
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K+GD ++VK+ E++ +G+ S + L
Sbjct: 669 VLKIGDTIEVKITEIDKQGRANASHKVL 696
>gi|262191202|ref|ZP_06049401.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
5369-93]
gi|262032904|gb|EEY51443.1| polyribonucleotide nucleotidyltransferase [Vibrio cholerae CT
5369-93]
Length = 708
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/756 (40%), Positives = 431/756 (57%), Gaps = 58/756 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG M RQA+ AV T +T ++ SV DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVMARQATAAVMATMDDTAVFVSVVGKKEAVVGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLIARLIDRPIRPLFPDGFTNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD +++ A+A+S +P + I RVG + + ++NP+ +E++ S+LDL++A
Sbjct: 122 NPDVQPDIISMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSEKELKQSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E L+EE ++ AV G D + + + P
Sbjct: 182 GTDNAVLMVESEAQILTEEEMLAAVVFGHDQQQAVIKAINEFAAEVATPAWEWVAPAENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
EL V +A LV+ QI K+ R + ++ +V L
Sbjct: 242 ELKAKVAALAETRLVEAYQITEKMARYDRIHAISAEVTAAL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L E+E +D ++H +F ++ +RR I+
Sbjct: 283 -LAENE----------ALDTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGSALFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+RV S
Sbjct: 373 KK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + ++F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK R HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+ +S+ AP IH MK+ EKI +IG GG ++ + EETG I+ EDDGT+KI A D
Sbjct: 546 RSDISEFAPRIHTMKISVEKIKDVIGKGGAVIRQLTEETGT-TIEIEDDGTIKIAATDGD 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 QAKEAIRRIQEITAEVEVGVIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D + V VK++E++ +G++RLS + + +DA
Sbjct: 664 SDYLTESQEVQVKVLEIDRQGRVRLSMKEAVETSDA 699
>gi|254722007|ref|ZP_05183796.1| polynucleotide phosphorylase/polyadenylase [Bacillus anthracis str.
A1055]
Length = 712
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G + ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHEEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|346725507|ref|YP_004852176.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. citrumelo F1]
gi|346650254|gb|AEO42878.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas axonopodis
pv. citrumelo F1]
Length = 704
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/742 (41%), Positives = 447/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + E + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPS--DWVAPAKNESMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLAKEFGELEYQTMRGSVLSSKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+P+ +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|78048389|ref|YP_364564.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924695|ref|ZP_08186133.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas perforans 91-118]
gi|123730263|sp|Q3BRP9.1|PNP_XANC5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78036819|emb|CAJ24512.1| polynucleotide phosphorylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544901|gb|EGD16246.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas perforans 91-118]
Length = 704
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/742 (41%), Positives = 447/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P I +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + E + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPS--DWVAPAKNEGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLAKEFGELEYQTMRGSVLSSKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+P+ +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|323491486|ref|ZP_08096669.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
20546]
gi|323314270|gb|EGA67351.1| polynucleotide phosphorylase/polyadenylase [Vibrio brasiliensis LMG
20546]
Length = 710
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 301/748 (40%), Positives = 433/748 (57%), Gaps = 58/748 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + + + P
Sbjct: 182 GTESAVLMVESEADNLTEEEMLAAVVYGHDQQQTVISAINEFAAEVATPAWDWVAPEENT 241
Query: 326 ELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIP 385
L + E+A +LV+ QI K+ R + ++ +V +L
Sbjct: 242 ALTTKIAELAEAKLVEAYQITEKMARYDRIHTIAAEVNEVL------------------- 282
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
L ED E + ++H +F ++ +RR I+
Sbjct: 283 -LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRSIIA 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D +R + R G+LPR HGS+LFTRGETQ+L TLG ++ AQ ID L +
Sbjct: 313 GNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRDAQIIDELTGE 372
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV S
Sbjct: 373 RK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRVVSE 431
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 432 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDILGD 485
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG +GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 486 EDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAISGA 545
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A + +
Sbjct: 546 REDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAATEGT 604
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ + K
Sbjct: 605 AAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
D + G V VK++E++ +G++RLS +
Sbjct: 664 SDYLAEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|254787145|ref|YP_003074574.1| polynucleotide phosphorylase/polyadenylase [Teredinibacter turnerae
T7901]
gi|259534168|sp|C5BPV5.1|PNP_TERTT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|237684870|gb|ACR12134.1| polyribonucleotide nucleotidyltransferase [Teredinibacter turnerae
T7901]
Length = 705
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/752 (41%), Positives = 431/752 (57%), Gaps = 59/752 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
PV K +G+ I +ETG + RQA+GAV + G+T + +V A S DFFPL+V+
Sbjct: 2 NPVIKKFQYGNDTITLETGRIARQATGAVLASMGKTSVLCTVVGAKEASPGQDFFPLSVH 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+ AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q++ V++ +
Sbjct: 62 YQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPDGFVNEVQVVCTVVAAEK 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLV-GDKFIVNPTTQEMEDSQLDLLLAG 266
PD A+ A+A+S +P + I RVG D +++NPT Q + S+LD+++AG
Sbjct: 122 DVDPDICAMIGTSAALAISGIPFNGPIGAARVGYTQADGYLLNPTYQALASSELDMVVAG 181
Query: 267 SDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326
+ DA+LM+E + L E++++ AV ++ + V L + GKP +
Sbjct: 182 TQDAVLMVESEANELPEDIMLGAVLYAHQEMQAVVQAVNELAKDAGKPTWDWQPEAVNQA 241
Query: 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD 386
L ++ E + +I +K R LS L + + L+ G D
Sbjct: 242 LVDALKADFEESIGVAYRITDKQKRYDRLSELRSQAVAQLAGEG--------------SD 287
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
+ +D DVK VF ++ +R R+V G
Sbjct: 288 ISQD-----------------------------------DVKKVFGKLEKNIVRSRVVAG 312
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR +RP+ G+LP+ HGSALFTRGETQ+L V TLG + AQ ID LE +
Sbjct: 313 EPRIDGRDTKTVRPLQVEVGVLPKVHGSALFTRGETQALVVATLGSARDAQIIDALEGEH 372
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
F L Y+FPP SVGE GR+GA RREIGHG LA R + +LP ++ FPYT+RV S I
Sbjct: 373 R-DNFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAMLPKEDQFPYTMRVVSEI 431
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMASVCG LAL DAGVP+K +AG+AMG+V + + F +L+DI G E
Sbjct: 432 TESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEENGFA------VLTDILGDE 485
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL+QA R HIL+EM P
Sbjct: 486 DHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMETALEQALHARLHILSEMNAVIAQPR 545
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
SLS +AP H MKV PEKI IIG GG ++SI EETG +ID +DDGTVKI D S
Sbjct: 546 ESLSDNAPQFHTMKVDPEKIRDIIGKGGATIRSITEETGA-SIDIDDDGTVKIYGDDGDS 604
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
L+ + I +T +G++Y+ ++ I +G FV PG++GL HIS+++ +
Sbjct: 605 LQGAINRIEEITAEAEIGEVYKG-KVVRIVDFGAFVNFLPGKDGLVHISQIAHERVQNVT 663
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
D +K G VDVK ++++ +G+++LS + LLP+
Sbjct: 664 DYLKEGQEVDVKCMDIDQRGRIKLSIKELLPQ 695
>gi|163752368|ref|ZP_02159563.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
gi|161327740|gb|EDP98927.1| polyribonucleotide nucleotidyltransferase [Shewanella benthica
KT99]
Length = 702
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 302/755 (40%), Positives = 442/755 (58%), Gaps = 60/755 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G I +ETG + RQA AV + G+T + +V DFFPL VN
Sbjct: 2 NPIVKSFEYGQHTITLETGVIARQADAAVLASMGDTTVLVTVVGKKDEEPGRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQER AAG+ GGFFKREGR + E L+ RLIDRP+RP GF +E Q++ V+S D
Sbjct: 62 YQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
PD +++ A+A+S +P + + RVG + ++I+NP ++ +S LDL++AG+
Sbjct: 122 EINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+ A+LM+E L+EE+++ +V G + + + +K L GKP T + +L
Sbjct: 182 EGAVLMVESEAASLAEEVMLGSVAYGHEQQQVVITAIKELKAEAGKPAWDWTAPVSDEDL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLE-EKVLTILSENGYVSKDETVGIVETIPD 386
++ +A E+ QI +K RR A+++L+ + + +++EN
Sbjct: 242 VAKIKALAEEKFSAAYQIADKSERRDAVNALKSDAIEKLVAENA---------------- 285
Query: 387 LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEG 446
DV ++ +V + V + +R RI+ G
Sbjct: 286 --------------------DVDLR--------------EVGKILSSVEKQVVRGRILAG 311
Query: 447 GRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDD 506
R DGR D +R ++ G+LPR HGSA+FTRGETQ+L TLG ++ AQ++D++ +
Sbjct: 312 KPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERDAQKVDSIMGE- 370
Query: 507 EVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566
RF L Y+FPP VGE G +G+P RREIGHG LA R ++ V+PS +FPY+IRV S I
Sbjct: 371 YTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGMKAVMPSAEEFPYSIRVVSEI 430
Query: 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSE 626
TESNGSSSMA+VCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G E
Sbjct: 431 TESNGSSSMATVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDF------VVLSDILGDE 484
Query: 627 DASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPS 686
D GDMDFKVAG DGITA QMDIK+ GIT +M+ ALQQA R HIL M +
Sbjct: 485 DHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAIGTHR 544
Query: 687 NSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSS 746
+ +S HAP I I+K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI + + +
Sbjct: 545 DDISAHAPRITIIKINPEKIRDVIGKGGATIRALTEETGT-TIELEDDGTVKIASSNSEA 603
Query: 747 LEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806
+++ I +T VG IY N ++ I +G FV I PG++GL HIS+++ +A
Sbjct: 604 TKEAIRRIEEITAEVEVGTIY-NGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVANVS 662
Query: 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D ++ G V VK++EV+ +G++RLS + P+A++
Sbjct: 663 DYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKAES 697
>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase [Ralstonia eutropha JMP134]
gi|123625489|sp|Q473U7.1|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
JMP134]
Length = 728
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 314/756 (41%), Positives = 439/756 (58%), Gaps = 60/756 (7%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+ +G + +ETG + RQA GAV V +T++ +V A P DFFPL V+Y E+
Sbjct: 10 QFQWGQHTVRMETGEIARQAGGAVIVDVEDTVVLATVVAAKSPKPGQDFFPLTVDYIEKT 69
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR ++E L RLIDRPLRP +GFY++ Q++ V+S + D
Sbjct: 70 YAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEIPAD 129
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A A+A+S +P + + R+G ++++NPT +M S LDL++AG++ A+L
Sbjct: 130 IPALIGASAALAVSGIPFNGPVGAARIGYKDGQYLLNPTRSQMATSDLDLVVAGTERAVL 189
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHV 331
M+E + LSE++++ AV G + ++ N + LV GKP+ D P E L V
Sbjct: 190 MVESEANQLSEDVMLGAVVYGHEQMQIAINAIHDLVREGGKPEW-DWAPAPKNEALIAKV 248
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+A L + Q++ K R + L + V L+E G
Sbjct: 249 TEVALPLLQEAYQLRQKSARSQKLKEVSANVTAALAEAG--------------------- 287
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
VD + +V+V + ++ +K +R +I+ G R D
Sbjct: 288 -------VDAD---------------------KVEVGNIMFDLEAKIVRGQILGGEPRID 319
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI R +LPRAHGSALFTRGETQ+L V TLG K Q ID L + RF
Sbjct: 320 GRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYR-DRF 378
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+ PP + GE GR+G+P RREIGHG LA+RAL PVLP D++F YTIR+ S ITESNG
Sbjct: 379 MLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITESNG 438
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCLAL DAGVP+K +AGVAMG++L+ ++F +L+DI G ED GD
Sbjct: 439 SSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA------VLTDILGDEDHLGD 492
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG ++GITA QMDIKV GIT +M+ AL QAK+GR HIL M LS
Sbjct: 493 MDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGAMQGAMGHARTELSA 552
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP + MK+ P+KI +IG GG ++++ +ETG ID ++DGT+ I + + ++K
Sbjct: 553 HAPRMITMKIHPDKIREVIGKGGSTIQALTKETGT-TIDIQEDGTITIASTSTDGMAEAK 611
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I +T VG IY N + + +G V I PG++GL HISE+ + + +D +K
Sbjct: 612 RRIEGITAEAEVGKIY-NGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVKDIKDWLKE 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVK 847
G + VKLI+ ++KG+LRLS +A L E PV
Sbjct: 671 GQQLRVKLIQADEKGRLRLSLKAALAEEGGSISPVN 706
>gi|134296437|ref|YP_001120172.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
vietnamiensis G4]
gi|187470949|sp|A4JGD4.1|PNP_BURVG RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|134139594|gb|ABO55337.1| 3' exoribonuclease [Burkholderia vietnamiensis G4]
Length = 715
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 312/759 (41%), Positives = 443/759 (58%), Gaps = 67/759 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 193 SEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEL 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A +L+ Q+++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 252 AHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 306
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 307 -------------------------------------------IEAKIVRSQILNGEPRI 323
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +R
Sbjct: 324 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ER 382
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESN
Sbjct: 383 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITESN 442
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 443 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 496
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS
Sbjct: 497 DMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLS 556
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++
Sbjct: 557 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEA 615
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 616 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 674
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADA----ENPP 845
G V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 675 EGQQVKVKVIQTDEKGRVRLSAKALLNEAAAASQSDTPP 713
>gi|423470021|ref|ZP_17446765.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
gi|402437273|gb|EJV69297.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus BAG6O-2]
Length = 717
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 442/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A+S ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|423522363|ref|ZP_17498836.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
gi|401175057|gb|EJQ82260.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus HuA4-10]
Length = 717
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/743 (41%), Positives = 442/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRPLRP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPLRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEKSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A+S ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTVKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|350532300|ref|ZP_08911241.1| polynucleotide phosphorylase/polyadenylase [Vibrio rotiferianus
DAT722]
Length = 710
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/751 (40%), Positives = 438/751 (58%), Gaps = 64/751 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG V + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHVDGQLVLNPSNTELETSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + +KA+ E + + P
Sbjct: 182 GTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQAV---IKAINEFKAEVATPAWDWVAPE 238
Query: 326 E---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
E L + E+A +LV+ QI K+ R + + +V +L
Sbjct: 239 ENTALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVL---------------- 282
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
L ED E + ++H +F ++ +RR
Sbjct: 283 ----LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRS 309
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I+ G R DGR D +R + R G+LPR HGS+LFTRGETQ++ TLG ++ AQ ID L
Sbjct: 310 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDEL 369
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV
Sbjct: 370 TGERK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRV 428
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI
Sbjct: 429 VSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDF------VVLSDI 482
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG DGITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 483 LGDEDHLGDMDFKVAGTNDGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAI 542
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A
Sbjct: 543 SGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAAT 601
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
+ ++ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ +
Sbjct: 602 EGTAAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIAEKRV 660
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
K D + G V VK++E++ +G++RLS +
Sbjct: 661 EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|387902797|ref|YP_006333136.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. KJ006]
gi|387577689|gb|AFJ86405.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. KJ006]
Length = 713
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 312/759 (41%), Positives = 443/759 (58%), Gaps = 67/759 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 11 WGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYLEKTYSA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 71 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPDIPADIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV + + +++NPT +++ S LDL++AG++ A+LM+E
Sbjct: 131 LIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLVVAGTERAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L E++++ AV G + ++ + + LV GKP+ D P E L V E+
Sbjct: 191 SEADQLPEDVMLGAVVFGHEQMQIAIDAIHELVREGGKPEW-DWQPAPKNEALIARVTEL 249
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A +L+ Q+++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 250 AHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 304
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 305 -------------------------------------------IEAKIVRSQILNGEPRI 321
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +R
Sbjct: 322 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ER 380
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS ++F Y+IRV S ITESN
Sbjct: 381 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITESN 440
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 441 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 494
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + LS
Sbjct: 495 DMDFKVAGTEHGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVSGANTQLS 554
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++
Sbjct: 555 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEA 613
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 614 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 672
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADA----ENPP 845
G V VK+I+ ++KG++RLS +ALL EA A + PP
Sbjct: 673 EGQQVKVKVIQTDEKGRVRLSAKALLNEAAAASQSDTPP 711
>gi|339483022|ref|YP_004694808.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. Is79A3]
gi|338805167|gb|AEJ01409.1| Polyribonucleotide nucleotidyltransferase [Nitrosomonas sp. Is79A3]
Length = 706
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/756 (40%), Positives = 439/756 (58%), Gaps = 57/756 (7%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
+P+ I +G Q+ +ETG + RQA GAV VT +T++ +V A DFFPL V+
Sbjct: 2 KPIKKSITYGRHQLTLETGEIARQAHGAVMVTMDDTVVLVTVVGAKTIKPGQDFFPLTVD 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+F AAGR G FFKREGR + E L RLIDRP+RP +GFY+E QI++ V+S D
Sbjct: 62 YQEKFYAAGRIPGSFFKREGRPSEKETLTSRLIDRPIRPLFPEGFYNEVQIVATVMSADT 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
D ++ A+ LS +P + RVG + +++++NPTT E++D+QL+L++AG+
Sbjct: 122 EVDADIPSIIGTSAALILSGIPFDGPLGAARVGYINNEYVLNPTTSELKDTQLNLVVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
A+LM+E LSEE+++ AV G + ++ + N + + G T +
Sbjct: 182 QQAVLMVESEAMELSEEVMLGAVIFGHEQMQAVINAINEFADEAGVTAWDWTPPVKDTSF 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+ + +A +L +IK K R +A+ ++ +++ T
Sbjct: 242 EEKIASLAEADLRMAYKIKQKQARSEAIEAISQRIST----------------------- 278
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E+ VD E P L S K F + +K +R +I++G
Sbjct: 279 --------EIGVDTE--------------GGPDLQS---FKEAFFALEAKIVRNQILDGE 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +R I+ R G+LPR HGSALFTRGETQ+LAV TLG + Q+ID+L+ D
Sbjct: 314 PRIDGRGTRTVRAITIRNGVLPRTHGSALFTRGETQALAVATLGTARDEQKIDSLQGDYN 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
RF L Y+ PP + GE+GR+G P RREIGHG LA+RA+ VLPS +F Y++RV S IT
Sbjct: 374 -DRFMLHYNMPPYATGEIGRVGTPKRREIGHGRLAKRAIAAVLPSPEEFGYSLRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGGCLAL DAGVP+K +AG+AMG++ D + F +L+DI G ED
Sbjct: 433 ESNGSSSMASVCGGCLALMDAGVPLKAHVAGIAMGLIKDGNRFA------VLTDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E GITA QMDIK+ GIT +M AL QA +GR HIL M + P
Sbjct: 487 HLGDMDFKVAGTEKGITALQMDIKIQGITKDIMHAALIQAHEGRMHILQIMKQALPSTRE 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S HAP I +K+ PEKI +IG GG ++++ EETG ID DDG V I
Sbjct: 547 DISVHAPRIIKIKINPEKIRDVIGKGGAVIRALTEETGT-TIDITDDGQVTIACVSSEGG 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E ++ I ++T VG IY +K + +G V + PG++GL HIS++++ + D
Sbjct: 606 ELARKRIEDITAEVEVGKIYDGIVLK-LLDFGAIVSVLPGKDGLLHISQIANERVNNVSD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
+ G V VK++E +DKG+LRLS +A+ + D+ +
Sbjct: 665 HLNEGQQVRVKVLEADDKGRLRLSMKAVSADGDSTD 700
>gi|220934183|ref|YP_002513082.1| polynucleotide phosphorylase/polyadenylase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|254782744|sp|B8GP06.1|PNP_THISH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|219995493|gb|ACL72095.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 693
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/739 (41%), Positives = 434/739 (58%), Gaps = 59/739 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIY-TSVCLADVPSEPSDFFPLNVNYQERFSA 154
+G + ETG + RQASGAV V +T++ T+V L DV ++ DFFPL VNYQER A
Sbjct: 10 YGQHTVTFETGEIARQASGAVLVNMADTVVLVTAVGLKDV-AQGRDFFPLTVNYQERTYA 68
Query: 155 AGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDAL 214
AGR GGFFKREGR + E L RLIDRP+RP KGF +E Q+++ V+S + PD
Sbjct: 69 AGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIATVMSMNPEVDPDVP 128
Query: 215 AVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMI 274
A+ A A+ALS +P I RVG + +++NP+ E++ S LDL++AG++ A+LM+
Sbjct: 129 AMLGASAALALSGLPFKGPIGAARVGYLNGAYVLNPSMSELKHSDLDLVVAGTEKAVLMV 188
Query: 275 EGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEI 334
E LSEE+++ AV G + ++ + L GKP L + V
Sbjct: 189 ESEAKLLSEEVMLGAVMYGHEQMQAAIKVINELAAEAGKPAWDWVAPEENVALKEAVAAA 248
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
EL QI K R + +++L + V+ L+
Sbjct: 249 CEAELTAAYQIAEKQARNQQVNALRDAVVAKLATG------------------------- 283
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
+EG P + K VK F + + +R R+++G R DGR
Sbjct: 284 ---------EEG----APSAEK----------VKGAFGALEKRIVRSRVLKGEPRIDGRD 320
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
+RPI+ + G+LPR HGSALFTRGETQ++ V TLG + AQ I+ +E + +RF L
Sbjct: 321 TRTVRPITVKTGVLPRTHGSALFTRGETQAIVVATLGTDRDAQLIEAIEGERR-ERFMLH 379
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP GE G +G+P RREIGHG LA+R ++ V+P + + PY +RV S ITESNGSSS
Sbjct: 380 YNFPPFCTGETGMVGSPKRREIGHGRLAKRGVQAVMPGEAECPYVLRVVSEITESNGSSS 439
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MASVCG LAL DAGVP+K +AG+AMG++ + D F ++SDI G ED GDMDF
Sbjct: 440 MASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDAFA------VISDILGDEDHLGDMDF 493
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
KVAG++DG++A QMDIK+ GIT +M+KAL QAK+GR HIL +M P +S +AP
Sbjct: 494 KVAGSKDGVSALQMDIKIDGITREIMEKALAQAKEGRLHILEKMNAVLSEPRTEVSAYAP 553
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
+K+ P+KI +IG GG ++++ EETG +ID DDGTVKI + D ++ ++++ I
Sbjct: 554 RFTTLKIHPDKIRDVIGKGGATIRALTEETGT-SIDISDDGTVKIASVDKAAGDEARRRI 612
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDL 814
LT VG IY +K I +G FV I PGR+GL HIS++S + D + GDL
Sbjct: 613 EELTADVEVGRIYEGRVVK-IMDFGAFVTILPGRDGLVHISQISEERVESVSDRLTEGDL 671
Query: 815 VDVKLIEVNDKGQLRLSRR 833
V VK++EV+ +G++RLS +
Sbjct: 672 VKVKVLEVDKQGRIRLSMK 690
>gi|167644014|ref|YP_001681677.1| polynucleotide phosphorylase/polyadenylase [Caulobacter sp. K31]
gi|189037303|sp|B0T175.1|PNP_CAUSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|167346444|gb|ABZ69179.1| Polyribonucleotide nucleotidyltransferase [Caulobacter sp. K31]
Length = 716
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/748 (41%), Positives = 438/748 (58%), Gaps = 68/748 (9%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G + +++ETG + RQA GAV T GET++ + A DFFPL VNY E+
Sbjct: 9 IEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKKAKPGQDFFPLTVNYIEKTY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E LV RLIDRP+RP +KGF +E Q++ VL +D + PD
Sbjct: 69 AAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVCTVLQHDLENDPDI 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
+A+ AA A+ +S P I G RVG V D++I+NPT E+++S++DL++AG+ DA++M
Sbjct: 129 VAMCAASAALVISGAPFMGPIGGCRVGYVNDEYILNPTLDELKESKMDLVVAGTADAVMM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK------PKMLDTIKLPPPEL 327
+E LSEE+++ V +++ + N + L E K P+ D +K
Sbjct: 189 VESEIQELSEEIVLGGVSFAHKSMQAVINGIIELAEHAAKEPFDFQPEDTDALK------ 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V++ G +L I+ K R ALS+ + K + +++
Sbjct: 243 -AEVKKAVGADLADAYTIRAKGDRHAALSAAKSKAVDTFAKS------------------ 283
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
D I P S +F E++ +V RR I++ G
Sbjct: 284 ----------------DANPAGIDPLKLIS---VFKELEADIV---------RRSILDTG 315
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D +RPI G+LPR HGSALFTRGETQ++ V TLG Q ID LE +
Sbjct: 316 IRIDGRTVDTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYK 375
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LP+ DFPYTIR+ S IT
Sbjct: 376 -EAFLLHYNFPPFSVGETGRMGSPGRREIGHGKLAWRALRPMLPAKEDFPYTIRLVSEIT 434
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG LA+ DAGVP+ ++G+AMG++L+ D F +LSDI G ED
Sbjct: 435 ESNGSSSMATVCGASLAMMDAGVPLIRPVSGIAMGLILEKDGFA------VLSDILGDED 488
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG G+T+ QMDIK+ GIT +MK+AL QAK GR HIL EM K P
Sbjct: 489 HLGDMDFKVAGTSQGLTSLQMDIKIAGITEEIMKQALAQAKGGREHILGEMNKAMDAPRE 548
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+ +AP I + + +KI +IG+GGK ++ I+ TG + +D D+GTVK++A D + +
Sbjct: 549 EVGDYAPKIETITIPTDKIREVIGTGGKVIREIVATTGAK-VDINDEGTVKVSASDGAKI 607
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + I ++T VG IY +K + +G FV ++GL H+S++S+ +AK D
Sbjct: 608 KAAIDWIKSITQEAEVGAIYDGKVVK-VVDFGAFVNFFGAKDGLVHVSQISNERVAKPSD 666
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+K G +V VKL+ +D+G+ +LS + +
Sbjct: 667 VLKEGQIVKVKLLGFDDRGKTKLSMKVV 694
>gi|163757756|ref|ZP_02164845.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
DFL-43]
gi|162285258|gb|EDQ35540.1| polynucleotide phosphorylase/polyadenylase [Hoeflea phototrophica
DFL-43]
Length = 706
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 315/752 (41%), Positives = 440/752 (58%), Gaps = 58/752 (7%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V+I +G R +++ETG + RQA GAV T GET++ +V A P DFFPL VNYQE+
Sbjct: 7 VEIEWGGRPLILETGKVARQADGAVIATYGETVVLATVVSAKSPKPGQDFFPLTVNYQEK 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GG+FKREGR ++E L RLIDRPLRP G+ ++TQI+ V+ +D + P
Sbjct: 67 TYAAGKIPGGYFKREGRPSENETLTSRLIDRPLRPLFPDGYKNDTQIIITVMQHDLENNP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LA+ AA A+ +S +P IAG RVG + ++++NP EM +S LDL++AG++DA+
Sbjct: 127 DILALVAASAALTISGIPFMGPIAGARVGYINGEYVLNPHVDEMPESDLDLVVAGTNDAV 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKH 330
LM+E L+E++++ AV G + + + + + L E K P+ D +L
Sbjct: 187 LMVESEAKELAEDVMLGAVMFGHKSFQPVIDAIIKLAEAAAKEPR--DFSAPDHSDLEAE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ + +L K + +K R A+ ++ KV
Sbjct: 245 MLSMCEADLRKAYENTDKAARYAAIDEVKAKVKE-------------------------- 278
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
H P + P SEV + VFK + +K +R I+E R
Sbjct: 279 ------------------HFAP-AEGEEPRFTSEV-IGAVFKSLQAKVVRGAILETKSRI 318
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI S GLLPR HGSALFTRGETQ++ V TLG + Q +D+L +
Sbjct: 319 DGRDLSTVRPIVSEVGLLPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGTKKAT- 377
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+FPP SVGE GR G+P RREIGHG LA RA+ P++PS FPYT+RV S ITESN
Sbjct: 378 FMLHYNFPPYSVGETGRTGSPGRREIGHGKLAWRAINPMMPSAEQFPYTLRVVSEITESN 437
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMA+VCG LAL DAGVP+ +AG+AMG++ + ++F +LSDI G ED G
Sbjct: 438 GSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLIKEGEDFA------VLSDILGDEDHLG 491
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG DGITA QMDIK+ GIT +MK AL QA+ GR HIL EM L
Sbjct: 492 DMDFKVAGTADGITALQMDIKIDGITEEIMKIALSQAEGGRLHILKEMGNALTESRGQLG 551
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP I +M + +KI +IG+GGK ++ I+E+TG + I+ +DDGT+KI + +E +
Sbjct: 552 EFAPRIEVMNIPVDKIRDVIGTGGKIIREIVEKTGAK-INIDDDGTIKIASSSGKEIEAA 610
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I ++ P VG IY +K +A +G FV ++GL HIS+L++ +AK DVVK
Sbjct: 611 KKWIHSIVAEPEVGVIYEGTVVK-VADFGAFVNFFGPKDGLVHISQLAAERVAKTSDVVK 669
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
G V VKL+ +++G++RLS + + E E
Sbjct: 670 EGQKVWVKLLGFDERGKVRLSMKVVDQETGKE 701
>gi|58582837|ref|YP_201853.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624704|ref|YP_452076.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188577676|ref|YP_001914605.1| polynucleotide phosphorylase/polyadenylase [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|75434649|sp|Q5GXV3.1|PNP_XANOR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123739068|sp|Q2P0X5.1|PNP_XANOM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704832|sp|B2SVJ9.1|PNP_XANOP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|58427431|gb|AAW76468.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84368644|dbj|BAE69802.1| polynucleotide phosphorylase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522128|gb|ACD60073.1| polyribonucleotide nucleotidyltransferase [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 704
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/742 (41%), Positives = 449/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + IA +VG ++I+NPT +++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTDLKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + + + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINIINELAVEAGTKPS--DWVAPAKNDGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ +
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATI--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
EG ++ D+ F E+ + +R ++ R DGR
Sbjct: 287 -----------EG---------------WAAGDLAKEFGELEYQTMRGSVLSTKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +A
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|423558630|ref|ZP_17534932.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
gi|401191898|gb|EJQ98920.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus MC67]
Length = 717
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 442/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDMHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A+S ++++V+ + E E+
Sbjct: 249 MAETDMHSAIQVHEKHAREDAISVVKKRVI----------------------EHYEAEEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + IL+DI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILTDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLAVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|386346882|ref|YP_006045131.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6578]
gi|339411849|gb|AEJ61414.1| Polyribonucleotide nucleotidyltransferase [Spirochaeta thermophila
DSM 6578]
Length = 709
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 322/744 (43%), Positives = 440/744 (59%), Gaps = 66/744 (8%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
SV I G R++++ TG M RQA+GAV G T + + C E DF PL+V+Y E
Sbjct: 4 SVTIDVGGRELVLTTGKMARQANGAVFAQYGGTCVLATACCGSDVKEDLDFIPLSVDYNE 63
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
++ AAG+ GGFFKREGR ++ E+LV RLIDRP+RP K F E QI+ +S D ++
Sbjct: 64 KYYAAGKIPGGFFKREGRPREKEILVSRLIDRPMRPLFSKAFKREIQIIPTTVSADQINT 123
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
PD +A+ AA AV +S++P + VRVGLV F++NPT +++E S LD+++AG+ +
Sbjct: 124 PDVVAIVAASAAVTVSDIPFDGPVGAVRVGLVDGTFVINPTLEQLEASALDIVVAGTLEG 183
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I M+EG +SE+ L++A+++ + A+ + L E GK K+ L E +
Sbjct: 184 ITMVEGGAKEVSEDTLVEAIEIARGAIVSLCKAQLELSERAGKKKL----PLQEEESFPL 239
Query: 331 VEEI---AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
+E+ A L + +K K+ R KA+ E+V T E IPD
Sbjct: 240 KDEVIAYARPRLEEACFVKGKLERAKAIKKTREEVRTYFGER--------------IPD- 284
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
E E V +E+ + +R I+E G
Sbjct: 285 -----EQERAF-----------------------------NAVIEELEREIVRSSILERG 310
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR + IRPI+ G+LPR HGSALFTRGETQ+LA+ TLG Q +D+LE D
Sbjct: 311 IRTDGRGPEDIRPITCEVGVLPRTHGSALFTRGETQALAITTLGTVFDEQIMDDLEGDKR 370
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ F L Y+FPP SVGEVGR+ RREIGHG LA RALE VLPS +DFPYT+RV S I
Sbjct: 371 -ENFMLHYNFPPFSVGEVGRL-YTGRREIGHGHLAHRALEAVLPSKDDFPYTLRVVSEIL 428
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VCG L+L +AGVPIK +AG+AMG+V D G+ T +ILSDI G ED
Sbjct: 429 ESNGSSSMATVCGSTLSLLNAGVPIKKPVAGIAMGLVTD-----GERT-VILSDILGEED 482
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E+GITAFQMDIK+ I M+KAL+QA+ GR HIL M + P
Sbjct: 483 HFGDMDFKVAGTEEGITAFQMDIKIKNIDPATMRKALEQARRGRLHILGIMNQAISEPRP 542
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LS++AP I V PEKI LIIGS GK ++ I E V I+ +DDG++ I +K
Sbjct: 543 ELSQYAPRIIKFAVDPEKIGLIIGSAGKTIRQISETFDV-TINIDDDGSIVIYSKQKEKA 601
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E++KA I + P VG +Y ++K I +G F+E PGREGLCHIS++S + + D
Sbjct: 602 EQAKAYIDKMLEEPEVGKVY-TGKVKRIVDFGAFIEFLPGREGLCHISQMSVDRIGSPHD 660
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLS 831
VVK+ V V+++E++ G++ L+
Sbjct: 661 VVKLNQEVPVRILEIDRLGRVNLT 684
>gi|411118621|ref|ZP_11391002.1| polyribonucleotide nucleotidyltransferase [Oscillatoriales
cyanobacterium JSC-12]
gi|410712345|gb|EKQ69851.1| polyribonucleotide nucleotidyltransferase [Oscillatoriales
cyanobacterium JSC-12]
Length = 716
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 315/746 (42%), Positives = 443/746 (59%), Gaps = 50/746 (6%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I F R I ++ G + QA GAV + +T ++ + A+ E DF PL V+Y+ER
Sbjct: 8 ISFDGRDIRLKVGLLAPQAGGAVLIESEDTAVFVTATRAEA-REGIDFLPLLVDYEERLY 66
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAGR GGF +REGR + L RLIDRPLRP + Q+++ +S D PD
Sbjct: 67 AAGRIPGGFLRREGRPPEKATLTSRLIDRPLRPLFPGWLRDDIQVIATTMSMDERVPPDV 126
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
LAVT A IAV L+++P +A VRVGL+GD FI+NPT +E+E+ LDL++AGS D ++M
Sbjct: 127 LAVTGASIAVLLAKIPFYGPMAAVRVGLIGDDFIINPTYKEIEEGDLDLVVAGSPDGVIM 186
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E + L E+ +I+A+ G +AVR++ + L+ G ++ ++ PPE+ + +E
Sbjct: 187 VEAGANQLPEQDMIEAIDFGYEAVRDLIQAQRDLMAELG----IEIVQEEPPEVDQTLEN 242
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+ Q+K + R + ++ + L DE + E+I + + +
Sbjct: 243 FIRDR--ATAQVKEILGRFEPDKNVRDAAL-----------DE---VKESIKAAIAELPD 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D+ V V DE K S VFK+V K +RR+++E G R DGR
Sbjct: 287 DDPVKVAATADE-----KALSN--------------VFKDVIKKLMRRQVIEDGVRVDGR 327
Query: 454 FADGIRPISSRCGLL-PRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
D +RPIS R G+L PR HGS LF RG TQ L+V TLG AQ +D+L D++ KR+
Sbjct: 328 KLDEVRPISCRTGILPPRVHGSGLFNRGLTQVLSVATLGTPGDAQELDDLHPDEQ-KRYL 386
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
Y+ PP SVGE + +P RREIGHG LAERAL PVLPS DFPY IRV S + SNGS
Sbjct: 387 HHYNMPPYSVGETKPVRSPGRREIGHGALAERALVPVLPSKQDFPYVIRVVSEVLSSNGS 446
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
+SM SV G LAL DAGVPI ++G AMG++ + DE IL+DI G ED GDM
Sbjct: 447 TSMGSVSGSTLALMDAGVPITKPVSGAAMGLIKEGDEV------RILTDIQGIEDFLGDM 500
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG + GITA Q+D+K+ G+ + V+ +A+ QAK R HIL++M++ P LS +
Sbjct: 501 DFKVAGTDTGITALQLDMKITGLPMDVIAQAINQAKPARLHILSKMMETISTPRPELSPY 560
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP + +K+ PE I +IIG GGK +KSI EETG + ID EDDGTV I+A D +++K
Sbjct: 561 APRLMTIKIDPELIGMIIGPGGKTIKSITEETGAK-IDIEDDGTVTISALDGEKAKRAKG 619
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
II +T GD+Y + I P G FVE PG+EG+ HIS+L+ + K ED V VG
Sbjct: 620 IIQGMTRKLNTGDVYAG-RVTRIIPIGAFVEFLPGKEGMIHISQLADYRVGKVEDEVAVG 678
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPE 838
D V VK+ E++++G++ L+R + P+
Sbjct: 679 DEVIVKVREIDNRGRINLTRLGIHPD 704
>gi|387926989|ref|ZP_10129668.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
PB1]
gi|387589133|gb|EIJ81453.1| polynucleotide phosphorylase/polyadenylase [Bacillus methanolicus
PB1]
Length = 703
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 439/743 (59%), Gaps = 58/743 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ R + VE G + +QA+GAV V GET++ ++ ++ P DFFPL VNY+ER A
Sbjct: 12 WAGRNLTVEIGQLAKQANGAVLVRYGETVVLSTATASNEPKN-VDFFPLTVNYEERLYAV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP +GF +E Q++S V+S D + A
Sbjct: 71 GKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSVDQDCSSEMAA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A+ +S++P IAGV VG VG KFI+NP Q+ME S + L++AG+ DAI M+E
Sbjct: 131 MFGSSLALCISDIPFEGPIAGVTVGRVGGKFIINPDVQQMEQSDMHLVVAGTKDAINMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
D + EE++++A+ G + ++ + + + GK KM + EL V +
Sbjct: 191 AGADEVPEEIMLEAIMFGHEEIKRLIELQEKIAAEIGKEKMEVVLFELDKELEAEVRAMC 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
+++K +Q+ K R +A++ ++ +L E ++ DED
Sbjct: 251 EADMIKAIQVPEKQAREEAINEVKNDILAKYEE--------------------QEADED- 289
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
+ +K + + +RR I E R DGR
Sbjct: 290 ---------------------------TLKQIKQILDNIVKNEVRRLITEEKIRPDGRKV 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D IRP+SS G+LPR HGS LFTRG+TQ+L++ TLG Q +D L ++E KRF Y
Sbjct: 323 DEIRPLSSEIGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDGLGIEEE-KRFMHHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G + P RREIGHG L ERALEPV+PS+ +FPYT+R+ S + ESNGS+S
Sbjct: 382 NFPSFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKEFPYTVRLVSEVLESNGSTSQ 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+C LA+ DAGVPIK +AG+AMG+V D + IL+DI G ED GDMDFK
Sbjct: 442 ASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDNY------TILTDIQGMEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG G+TA QMDIK+ G++ ++++A+QQAK GR IL MLK P LSK+AP
Sbjct: 496 VAGTPKGVTALQMDIKIEGLSREILEEAMQQAKKGRMQILDSMLKTISKPREQLSKYAPK 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I M + P+KI +IG GK++ IIEETGV+ ID E DGT+ I++ + +K+K II
Sbjct: 556 ILTMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTIFISSINEEMNQKAKTIIE 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG +Y ++K I +G FVEI G++GL HISEL+ + K EDVV +GD +
Sbjct: 615 DIVREVEVGQLYLG-KVKRIEKFGAFVEIFSGKDGLVHISELAEERVGKVEDVVSIGDEI 673
Query: 816 DVKLIEVNDKGQLRLSRRALLPE 838
VK+ E++ +G++ LSR+A+L E
Sbjct: 674 LVKVTEIDKQGRVNLSRKAVLKE 696
>gi|408356815|ref|YP_006845346.1| polyribonucleotide nucleotidyltransferase [Amphibacillus xylanus
NBRC 15112]
gi|407727586|dbj|BAM47584.1| polyribonucleotide nucleotidyltransferase [Amphibacillus xylanus
NBRC 15112]
Length = 705
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 306/746 (41%), Positives = 435/746 (58%), Gaps = 62/746 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQE 150
K + +VE G + +QA+G+ V G+T I + A EP D FFPL VNY+E
Sbjct: 8 KTEIAGKPFIVEVGELAKQANGSCMVHYGDTSILAT---ATGSKEPKDLPFFPLTVNYEE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
R A G+ GGF KREGR + VL RLIDRP+RP +GF ++ Q++S V+S D
Sbjct: 65 RLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFPEGFRNDVQVISMVMSVDQNAP 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
+ A+ + IA+ +S++P + IAGV +G + +FI+NPT +E E S ++L +AG+ DA
Sbjct: 125 SEIAAMIGSSIALGVSDIPFNGPIAGVNIGRINGEFIINPTVEEREKSDMELTVAGTKDA 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
I M+E + + E+++++A+ + ++ + + + + GK KM + EL
Sbjct: 185 INMVEASANEVPEDVMLEAIMFAHEEIKRLVAFQEEIYQAVGKEKMEVALFNLDEELTLE 244
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
VE++A + LV +Q K+ R ++ ++++V+ + E+
Sbjct: 245 VEKLAKDRLVSAIQTHEKLEREASIELVKKEVI----------------------ETFEN 282
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ DEE + VK + ++ +RR I R
Sbjct: 283 NEADEETINQ--------------------------VKDILDQIVKDEVRRLITVEKVRP 316
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + IRP+SSR LLPR HGS LFTRG+TQ L+V TLG Q +D L+ + E KR
Sbjct: 317 DGRTPEEIRPLSSRVNLLPRTHGSGLFTRGQTQVLSVCTLGALGDVQILDGLDLE-ETKR 375
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F Y+FP SVGE G I AP RREIGHG L ERALE V+PS+ +FPYTIR+ S + ESN
Sbjct: 376 FMHHYNFPHFSVGETGPIRAPGRREIGHGALGERALEKVIPSETEFPYTIRLVSEVLESN 435
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSS AS+C LAL DAGVPIK +AG+AMG+V D++ +LSDI G ED G
Sbjct: 436 GSSSQASICASTLALMDAGVPIKAPVAGIAMGLVKQGDDY------TVLSDIQGMEDFLG 489
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG E GITA QMDIK+ G+ ++++ALQQA+ GR HIL M P LS
Sbjct: 490 DMDFKVAGTEKGITALQMDIKIDGLAREILEEALQQARVGRLHILEHMTSVIAEPKQELS 549
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP I M + P+KI +IG GK++ II+ETGV+ ID E DG+V I + D EK+
Sbjct: 550 TYAPKIITMTINPDKIRDVIGPSGKQINKIIDETGVK-IDIEQDGSVYIASADQEMNEKA 608
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K++I + VG++Y +K + +G F E+ G+EGL HISEL + K EDVVK
Sbjct: 609 KSMIEEIVREAQVGELYL-ATVKRVEKFGAFAELFKGKEGLIHISELDTKRTNKVEDVVK 667
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
VGD V VK+IE++ +G++ LSR+A+L
Sbjct: 668 VGDQVMVKVIEIDRQGRINLSRKAVL 693
>gi|121604326|ref|YP_981655.1| polynucleotide phosphorylase/polyadenylase [Polaromonas
naphthalenivorans CJ2]
gi|187610307|sp|A1VM56.1|PNP_POLNA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|120593295|gb|ABM36734.1| 3' exoribonuclease [Polaromonas naphthalenivorans CJ2]
Length = 703
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 310/756 (41%), Positives = 447/756 (59%), Gaps = 66/756 (8%)
Query: 85 SFPQPVSVKIPFGDRQILVETGHMGRQASGAVTV-TDGETIIYTSVCLADVPSEP-SDFF 142
S V+ +G ++ +ETG M RQA GAV + DG ++ T V +D ++P DFF
Sbjct: 2 SIFNKVTKSFQWGQHKVTMETGEMARQAGGAVLLDMDGTVVLATVVAKSD--AKPGQDFF 59
Query: 143 PLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWV 202
PL V+Y E+ AAGR G FFKREGR + E L RLIDRP+RP +GF++E Q++ V
Sbjct: 60 PLTVDYLEKTYAAGRIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVQVVIHV 119
Query: 203 LSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDL 262
LS + D A+ A+ A+++S +P + I RV + ++++NP ++++S +DL
Sbjct: 120 LSLNPEVEGDIPALIASSAALSISGIPFNGPIGAARVAYINGEYVLNPGKTQLQNSTMDL 179
Query: 263 LLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKL 322
++AG++ A+LM+E LSEE+++ A+ G + N + LV GKP + K
Sbjct: 180 VVAGTEAAVLMVESEAKQLSEEIMLGAIVFGHEQGNIAINAIHELVRDAGKP--VWDWKA 237
Query: 323 PPPE--LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGI 380
P + L V +A E+LV QI+NK R A + +T ++ G
Sbjct: 238 PAKDEVLIAKVVALAEEKLVAAYQIRNKQARTHA-----TRQVTTWTKMGL--------- 283
Query: 381 VETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLR 440
+ E V DG EG MLF ++ +K +R
Sbjct: 284 ------------KAEGVEFDGVAVEG-------------MLF----------DIEAKIVR 308
Query: 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
+I+ G R DGR +RPI R +LPR HGSALFTRGETQ+L V TLG ++ AQRID
Sbjct: 309 SQILAGDPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRID 368
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
L D E RF L Y+ PP + GE GR+G+P RREIGHG LA+RAL VLPS +FPYT+
Sbjct: 369 ALSGDYE-DRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSKEEFPYTM 427
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
RV S ITESNGSSSMASVCGGCL+L DAGVP+K +AG+AMG++ + + F +L+
Sbjct: 428 RVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFA------VLT 481
Query: 621 DITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
DI G ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QAK+ R HIL +M +
Sbjct: 482 DILGDEDHLGDMDFKVAGTTFGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQE 541
Query: 681 CSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKIT 740
+ +S AP +++MK+ PEKI +IG GG ++++ EETG + I+ E+DGT+ I
Sbjct: 542 AMGQANAEVSDFAPRLYVMKINPEKIRDVIGKGGAVIRALTEETGTQ-INIEEDGTITIA 600
Query: 741 AKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSN 800
+ D + +++K I+ +T +G +Y I I +G V + PG++GL HIS+++
Sbjct: 601 SNDSAKADEAKRRIAEITAEVEIGKVYEGA-ITKILDFGALVNLMPGKDGLLHISQIAHE 659
Query: 801 WLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
+ K D + G ++ VK++E ++KG+++LS +ALL
Sbjct: 660 RVEKVTDYLSEGQIIKVKVLETDEKGRVKLSMKALL 695
>gi|289207914|ref|YP_003459980.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
gi|288943545|gb|ADC71244.1| polyribonucleotide nucleotidyltransferase [Thioalkalivibrio sp.
K90mix]
Length = 695
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 322/747 (43%), Positives = 440/747 (58%), Gaps = 63/747 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPS-DFFPLNVNYQERFSA 154
+G+ + ETG + RQASGAV V ET++ + +A +EP DFFPL VNYQER A
Sbjct: 9 YGNHTVTFETGDIARQASGAVLVNMAETVVLVT-AVARKEAEPGRDFFPLTVNYQERTYA 67
Query: 155 AGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDAL 214
AG+ GGFFKREGR + E L RLIDRP+RP +GF +ETQI++ V+S + PD
Sbjct: 68 AGKIPGGFFKREGRPNEKETLTSRLIDRPIRPLFPEGFKNETQIVATVMSINPDVDPDIP 127
Query: 215 AVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMI 274
A+ A A+ALS VP + I RVG ++++NPT +EDS LDL++AG++ A+LM+
Sbjct: 128 ALLGASAALALSGVPFAGPIGAARVGYRAGEYLLNPTYSALEDSDLDLVVAGTEHAVLMV 187
Query: 275 EGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE--LYKHVE 332
E LSEE ++ AV G + ++ +K L GKP + PP E L V+
Sbjct: 188 ESEASELSEEAMLGAVMFGHEQMQAAIQAIKELAAEAGKPAW--DWQAPPSEASLEDRVK 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E G +LV+ QI K R + +S L + + ++ S+DE
Sbjct: 246 EAVGSDLVEAYQIAEKQARTQRISELRSQAVEAIA-----SEDE---------------- 284
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
S P S DVK F ++ + +R RI++G R DG
Sbjct: 285 ------------------------SGP---SAEDVKTAFHDLEYRLVRDRILDGNPRIDG 317
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R +RPIS + +LPR HGSA+FTRGETQ+L V TLG + AQ ID +E + RF
Sbjct: 318 RDNKTVRPISVQTSVLPRTHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERR-DRFM 376
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP GE G +G+P RREIGHG LA+R + V+P +FPY +RV S ITESNGS
Sbjct: 377 LHYNFPPYCTGETGFVGSPKRREIGHGRLAKRGVAAVMPKAEEFPYVVRVVSEITESNGS 436
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMASVCG LAL DAGVP+K +AG+AMG++ + D F +LSDI G ED GDM
Sbjct: 437 SSMASVCGTSLALMDAGVPLKAPVAGIAMGLIKEGDRFA------VLSDILGDEDHLGDM 490
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG +G+TA QMDIK+ GIT +M++AL QA++GR HIL M + P +S H
Sbjct: 491 DFKVAGTTNGVTALQMDIKIDGITREIMEQALAQAREGRMHILGCMNEVLPSHREEMSSH 550
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP MK+ P+KI +IG GG ++++ EETG ID +DDGTVK+ + D ++ ++K
Sbjct: 551 APRFITMKINPDKIRDVIGKGGATIRALTEETGA-TIDIQDDGTVKVASTDQAAGLEAKR 609
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I LT VG Y ++ I +G FV I PGR+GL HIS++S + D + G
Sbjct: 610 RIEELTADIEVGRQY-TGKVAKIMDFGAFVSILPGRDGLVHISQISDERVENVADFLSEG 668
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEA 839
D V VK++EV+ +G++RLS +A+ EA
Sbjct: 669 DSVTVKVLEVDKQGRIRLSMKAVESEA 695
>gi|389774740|ref|ZP_10192859.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter
spathiphylli B39]
gi|388438339|gb|EIL95094.1| polynucleotide phosphorylase/polyadenylase [Rhodanobacter
spathiphylli B39]
Length = 702
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 307/758 (40%), Positives = 437/758 (57%), Gaps = 68/758 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G+ ++ +ETG + RQASGAV + G T++ + A E DFFPL V+Y
Sbjct: 4 VTKSFQYGNHEVTLETGEIARQASGAVMASMGGTVVLVTAVAATKQKEGQDFFPLTVDYV 63
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+F +AGR GGFFKREGR + E L RLIDRP+RP + F +E Q+++ V+S +
Sbjct: 64 EKFYSAGRIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPEDFKNEVQVIAQVVSLNPEV 123
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
D +A+ A A++L+ +P I RVG K+++NP+ E++ S+LDL++AG+
Sbjct: 124 DGDIVALLGASAALSLAGIPFKGPIGAARVGYANGKYLLNPSQTELKTSELDLVVAGTAG 183
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSE++++ AV G ++ + L GK L
Sbjct: 184 AVLMVESEAQLLSEDVMLGAVMFGHQQMQTAIRAIAELATEAGKRSWDWKAPARNESLVA 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILS----ENGYVSKDETVGIVETIP 385
V+ G++L Q+++K+ RR A+S+++ VL L ENG+
Sbjct: 244 AVKGAVGDQLTAAFQVRDKLERRDAISAIKSDVLAGLKAQAEENGW-------------- 289
Query: 386 DLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVE 445
ST + E F+E+ +R +++
Sbjct: 290 -------------------------------STAAMAKE------FEELEYHTMRDSVLK 312
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID--NLE 503
R DGR D +R I++R G+LPR HGSALFTRGETQ+L VITLG + AQ ID E
Sbjct: 313 TKVRIDGRQLDDVRAITARVGVLPRTHGSALFTRGETQALVVITLGTTRDAQIIDAPGGE 372
Query: 504 SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVE 563
S D F Y+FPP SVGE GR GAP RREIGHG LA+R ++ V PS +FPY +RV
Sbjct: 373 SKDP---FLFHYNFPPFSVGEAGRFGAPKRREIGHGRLAKRGVQAVKPSIEEFPYVVRVV 429
Query: 564 STITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDIT 623
S ITESNGSSSMASVCG LA+ DAGVP+K +AG+AMG+V + ++F ++LSDI
Sbjct: 430 SEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLVKEGNDF------VVLSDIL 483
Query: 624 GSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSP 683
G ED GDMDFKVAG+ +GI+A QMDIK+ GIT +MK AL QAK GR HIL EM K
Sbjct: 484 GDEDHLGDMDFKVAGSAEGISALQMDIKIDGITEEIMKVALAQAKQGRLHILGEMGKALT 543
Query: 684 PPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKD 743
+S+ AP + +K+ P+KI +IG GG ++SI EETG ID DDGT+ I + +
Sbjct: 544 TARTEMSEFAPRLITIKIHPDKIREVIGKGGATIRSITEETGT-TIDISDDGTIIIGSVN 602
Query: 744 LSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLA 803
+ E +K I +T G IY ++ + +G FV I PG++GL H+S++S +
Sbjct: 603 REAGEAAKKRIEQITSDVEPGRIYEG-KVAKLMDFGAFVTIMPGKDGLVHVSQISDERVE 661
Query: 804 KAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
K D +K GD+V VK++EV+ +G++RLS +A+ + A
Sbjct: 662 KVSDKLKEGDIVKVKVLEVDKQGRIRLSMKAVTEDEHA 699
>gi|343500722|ref|ZP_08738612.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii ATCC
19109]
gi|418477451|ref|ZP_13046584.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii NCIMB
1337 = ATCC 19106]
gi|342820084|gb|EGU54915.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii ATCC
19109]
gi|384575191|gb|EIF05645.1| polynucleotide phosphorylase/polyadenylase [Vibrio tubiashii NCIMB
1337 = ATCC 19106]
Length = 710
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/766 (40%), Positives = 444/766 (57%), Gaps = 67/766 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTSVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+E S+LDL++A
Sbjct: 122 NPDVQPDMVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELETSKLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G++ A+LM+E D L+EE ++ AV G D + + +KA+ E + + P
Sbjct: 182 GTEGAVLMVESEADNLTEEEMLSAVVFGHDQQQVV---IKAINEFAAEVATPAWDWVAPE 238
Query: 326 E---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
E L + E+A +LV+ QI K+ R + ++ +V +L
Sbjct: 239 ENTTLVNKIAELAEAKLVEAYQITEKMARYDRIHAIAAEVNEVL---------------- 282
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
L ED E + ++H +F ++ +RR
Sbjct: 283 ----LAEDP----------EANTKEIHT-------------------IFHDLEKTVVRRS 309
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I+ G R DGR D +R + R G+LPR HGS+LFTRGETQ++ TLG ++ AQ ID L
Sbjct: 310 IIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQRDAQIIDEL 369
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
+ + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS ++FPYT+RV
Sbjct: 370 TGERK-DHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEFPYTVRV 428
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI
Sbjct: 429 VSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSDI 482
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 483 LGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDEAI 542
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
+S+ AP IH MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A
Sbjct: 543 SGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAAT 601
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
+ ++ +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++ +
Sbjct: 602 EGTAAKEAIRRIEEITAEVEVGRIY-TGKVARLADFGAFVTILPGKDGLVHISQIADKRV 660
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL---PEADAENPP 845
K D + G V VK++E++ +G++RLS + + EA +E P
Sbjct: 661 EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKTEEAASEEKP 706
>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
Length = 713
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/741 (41%), Positives = 435/741 (58%), Gaps = 63/741 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 11 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 71 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V D++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 131 LIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVAGTERAVLMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L EE+++ AV G + ++ + + LV GKP+ D P E L V EI
Sbjct: 191 SEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEW-DWQPAPKDEALIARVTEI 249
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A EL+ QI++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 250 AQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 304
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 305 -------------------------------------------LEAKIVRGQILNGEPRI 321
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +R
Sbjct: 322 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ER 380
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS +F Y+IRV S ITESN
Sbjct: 381 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITESN 440
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 441 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 494
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS
Sbjct: 495 DMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANTQLS 554
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++
Sbjct: 555 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEA 613
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 614 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 672
Query: 811 VGDLVDVKLIEVNDKGQLRLS 831
G V VK+I+ ++KG++RLS
Sbjct: 673 EGQQVKVKVIQTDEKGRVRLS 693
>gi|218961755|ref|YP_001741530.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
acidaminovorans]
gi|167730412|emb|CAO81324.1| polynucleotide phosphorylase/polyadenylase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 743
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/742 (41%), Positives = 444/742 (59%), Gaps = 55/742 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
F R+++VETG M +QA+G+V + GET + + ++ P+E DFFPL V+Y E+ AA
Sbjct: 13 FCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFPLTVDYIEKMYAA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFFKRE + L+ R+IDR +RP +GF ++ I+ VLS+DG+ P +
Sbjct: 73 GKIPGGFFKRESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVLSFDGVTDPSTMG 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME-DSQLDLLLAGSDDAILMI 274
V A +A+++S++P + IA V VG + ++F+VNP E+E S+L+L +AGS+ +I+MI
Sbjct: 133 VFGASLALSISDIPFNGPIASVTVGYIDNQFVVNPHFNEIETQSKLNLTVAGSESSIVMI 192
Query: 275 EGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEI 334
E LSEEM++ AV G ++++ + + CGK K+ + P E+ VE
Sbjct: 193 ESAASELSEEMMLDAVFTGHKEIQKLCALQQDFISACGKEKVEVVLDSIPEEIMNKVENA 252
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDED 394
G ++ + I K R+ A + E +++ + S+ ED D
Sbjct: 253 FGAKIAEATVIFGKQERQDAFDAAEAEMVEMFSQQ---------------------EDTD 291
Query: 395 EEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRF 454
+P +E K+ F E+ +++R I+ R DGR
Sbjct: 292 ----------------------LSPWEETERYYKMAFDELIRRYVRDSILRKQHRVDGRG 329
Query: 455 ADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQ 514
D IR I+ +LPR HGSALFTRGETQSL +TLG Q ID LE++ + K FYL
Sbjct: 330 TDDIREITCEIDVLPRVHGSALFTRGETQSLGTLTLGGGTDEQVIDGLETEYK-KSFYLH 388
Query: 515 YSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSS 574
Y+FPP SVGEVGRIG RRE+GHG LAERAL+ VLP + FPYTIR+ + ESNGSSS
Sbjct: 389 YNFPPYSVGEVGRIGPTGRRELGHGNLAERALKAVLPDKDSFPYTIRIVADTLESNGSSS 448
Query: 575 MASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDF 634
MAS+C GCLAL GVPIK +AG+AMG++++ +++ ++L+DI G ED GDMDF
Sbjct: 449 MASICSGCLALMAGGVPIKAPVAGIAMGLIMEGEDY------VVLTDIMGLEDHLGDMDF 502
Query: 635 KVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAP 694
K AG +GITA QMDIK+ GIT +M+ AL +AK R IL M +C P + L+ AP
Sbjct: 503 KCAGTREGITAMQMDIKISGITREIMQIALNKAKSARFKILDIMAECIAEPRSELAPWAP 562
Query: 695 LIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAII 754
I KV +KI IIG GGK +KSIIEE V+ ID +DDGTV+I + D S+ K+K+II
Sbjct: 563 RIESFKVPIDKIGEIIGPGGKMIKSIIEECQVQ-IDIQDDGTVRILSPDKESINKAKSII 621
Query: 755 SNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPG-REGLCHISELSSNWLAKAEDVVKVGD 813
+ + P GD++ ++ I PYG+FV+I G +EG+ HISE+ + + D+VK+GD
Sbjct: 622 KGIAVDPVAGDMFEG-QVTRIEPYGIFVKILGGTKEGMVHISEMYTGRINHPLDMVKLGD 680
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
V V+ + + DKG+L LS + +
Sbjct: 681 KVQVRTLGM-DKGKLSLSMKGV 701
>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|421469587|ref|ZP_15918034.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC BAA-247]
gi|421478340|ref|ZP_15926103.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CF2]
gi|226702628|sp|A9AJP0.1|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|400224933|gb|EJO55128.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CF2]
gi|400229438|gb|EJO59286.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC BAA-247]
Length = 715
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/741 (41%), Positives = 435/741 (58%), Gaps = 63/741 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G ++ +ETG + RQASGAV V +T++ +V A DFFPL V+Y E+ +A
Sbjct: 13 WGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFPLTVDYIEKTYSA 72
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGFF+REGR +HE L RLIDRPLRP +GFY+E Q++ VLS + D A
Sbjct: 73 GKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVLSVNPEIPADIPA 132
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A+A+S +P + + RV V D++++NPT ++++ S+LDL++AG++ A+LM+E
Sbjct: 133 LIGASAALAVSGLPFNGPVGAARVAYVNDQYVLNPTREQLKSSRLDLVVAGTERAVLMVE 192
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHVEEI 334
D L EE+++ AV G + ++ + + LV GKP+ D P E L V EI
Sbjct: 193 SEADQLPEEVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEW-DWQPAPKDEALIARVTEI 251
Query: 335 AGEELVKVLQIKNKIPRRKALSSLEEKVLTILSEN----GYVSKDETVGIVETIPDLLED 390
A EL+ QI++K R L + L E+ G V+ D+ T+ ++L D
Sbjct: 252 AQPELLAAYQIRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKA-----TVGNILFD 306
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
+ +K +R +I+ G R
Sbjct: 307 -------------------------------------------LEAKIVRGQILNGEPRI 323
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR +RPI R G+LPR HGSALFTRGETQ+L V TLG K Q ID LE + +R
Sbjct: 324 DGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYR-ER 382
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
F L Y+ PP + GE GR+G+P RREIGHG LA+RAL LPS +F Y+IRV S ITESN
Sbjct: 383 FMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITESN 442
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSMASVCGGCLAL DAGVP+K +AG+AMG++L+ ++F +L+DI G ED G
Sbjct: 443 GSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFA------VLTDILGDEDHLG 496
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG G+TA QMDIK+ GIT +M+ AL QAK+GR HIL +M + + LS
Sbjct: 497 DMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANTQLS 556
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+ AP + +K+ PEKI +IG GG ++++ EETG ID DDG V I + + ++
Sbjct: 557 EFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGT-TIDISDDGVVTIASTSSEGMAEA 615
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
K I N+T VG +Y +K + +G V + PG++GL HISE+ + + D +K
Sbjct: 616 KKRIENITAEIEVGQVYEGTVLK-LLDFGAIVNLLPGKDGLLHISEIVNERVKDINDYLK 674
Query: 811 VGDLVDVKLIEVNDKGQLRLS 831
G V VK+I+ ++KG++RLS
Sbjct: 675 EGQQVKVKVIQTDEKGRVRLS 695
>gi|421746948|ref|ZP_16184705.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
gi|409774480|gb|EKN56095.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
Length = 723
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 310/747 (41%), Positives = 440/747 (58%), Gaps = 60/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+ +G + +ETG + RQA GAV V +T++ +V A P DFFPL V+Y E+
Sbjct: 10 QFQWGQHTVRMETGEIARQAGGAVLVDVEDTVVLATVVAAKQPKPGQDFFPLTVDYIEKT 69
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR ++E L RLIDRPLRP +GFY++ Q++ V+S + D
Sbjct: 70 YAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNDVQVVVHVVSLNPEVPAD 129
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A A+A+S +P + + RVG ++++NPT ++ S+LDL++AG++ A+L
Sbjct: 130 IPALIGASAALAVSGIPFNGPVGAARVGYQNGQYLLNPTRSQLASSELDLVVAGTERAVL 189
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE-LYKHV 331
M+E + LSEE+++ AV G + ++ N + LV GKP+ + P E L V
Sbjct: 190 MVESEANQLSEEVMLGAVVYGHEQMQVAINAIHELVREGGKPEW-NWAPAPKNEALIAKV 248
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+ L + QI+ K R + + V L+E G VE
Sbjct: 249 AEVGSPLLQEAYQIRQKSARSQKVKEAYAAVEARLAEAG----------VE--------- 289
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
F +V+V + ++ +K +R +++ G R D
Sbjct: 290 ------------------------------FDKVEVGNILFDLEAKIVRGQVLAGEPRID 319
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI R +LPRAHGSALFTRGETQ+L V TLG K Q ID L + RF
Sbjct: 320 GRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYR-DRF 378
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+ PP + GE GR+G+P RREIGHG LA+RAL PVLP++ +F YTIR+ S ITESNG
Sbjct: 379 MLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPAEEEFAYTIRLVSEITESNG 438
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCLAL DAGVP+K +AGVAMG++L+ ++F +L+DI G ED GD
Sbjct: 439 SSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFA------VLTDILGDEDHLGD 492
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG ++GITA QMDIKV GIT +M+ AL QAK+GR HIL++M + LS+
Sbjct: 493 MDFKVAGTDNGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQEAMGHARTELSE 552
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
HAP + MK+ P+KI +IG GG ++++ +ETG ID ++DGT+ I + + ++K
Sbjct: 553 HAPRMITMKIHPDKIREVIGKGGSTIQALTKETGT-TIDIQEDGTITIASTSTEGMAEAK 611
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I +T VG IY N + + +G V I PG++GL HISE+ + + +D +K
Sbjct: 612 RRIEGITAEAEVGKIY-NGTVLKLLDFGAIVNILPGKDGLLHISEIVNERVKDIKDWLKE 670
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPE 838
G V VKLI+ ++KG+LRLS +A + E
Sbjct: 671 GQQVRVKLIQADEKGRLRLSLKAAMAE 697
>gi|229162743|ref|ZP_04290700.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
gi|228620625|gb|EEK77494.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus R309803]
Length = 712
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/743 (40%), Positives = 447/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I + RQ+ VET + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDWAGRQLTVETSQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
++ +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|78189646|ref|YP_379984.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
chlorochromatii CaD3]
gi|123579359|sp|Q3APY4.1|PNP_CHLCH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78171845|gb|ABB28941.1| RNA binding S1 [Chlorobium chlorochromatii CaD3]
Length = 728
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 313/753 (41%), Positives = 440/753 (58%), Gaps = 47/753 (6%)
Query: 90 VSVKIPFGDRQIL-VETGHMGRQASGAVTVTDGETIIYTSVCLAD-VPSEPSDFFPLNVN 147
V I G +IL +ETG M +QA GA V G+T++ +V + P DFFPL V
Sbjct: 3 VQKSIDLGHGRILSIETGKMAKQADGAAIVRLGDTMVLATVVSSKKTPPLGQDFFPLQVE 62
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
Y+E++SAAGR GGFFKREGR + E+L RLIDR LRP G+Y+ETQI+ V+S D
Sbjct: 63 YREKYSAAGRFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYYETQIIISVISSDQ 122
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
++ D L AA A+ +S++P ++ VRVG V +I+NP E+++S +D+ + G+
Sbjct: 123 VNDGDVLGGLAASAAIMVSDIPFQNPMSEVRVGRVNGLYIINPDVNELKESDIDMCIGGT 182
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
+D I M+EG + +SE +++A+Q G A+R++ + + KPK L + P EL
Sbjct: 183 NDTICMLEGEMNEISETEMLEAIQFGHTAIRKLCVLQQEVAAEVAKPKRLFVPTVIPTEL 242
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V R S L E T L + + + ET+
Sbjct: 243 DSFV-------------------RANCQSRLRELAYTPLGKEERAERTAAI-YNETLAAT 282
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
LE + E + D + + +E ++ V + +R I++
Sbjct: 283 LEHF----RATISSEEAQADT--------AKALCLNEHIIEDQIHAVEKEVMRHMILDDA 330
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
+R DGR D +RPI+ GL+PRAHGSALFTRGETQ+L +TLG ++ AQ +DNL + D+
Sbjct: 331 KRLDGRALDQVRPITIELGLIPRAHGSALFTRGETQALVTLTLGTQKDAQSVDNLTNSDD 390
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
KRFYL Y+FPP SVGE GR+G+ RREIGHG LAER+++ V P++ +FPYTIR+ S I
Sbjct: 391 -KRFYLHYNFPPFSVGECGRLGSIGRREIGHGNLAERSIKMVAPTEAEFPYTIRIVSDIL 449
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG LAL D GVPI+ ++G+AMG++ + D++ +LSDI G+ED
Sbjct: 450 ESNGSSSMASVCGGTLALMDGGVPIRKPVSGIAMGLIKENDKYA------VLSDILGNED 503
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKV+G DGITA QMDIK+ G+ +++ AL+QA+ GR HIL EM K P
Sbjct: 504 HLGDMDFKVSGTRDGITACQMDIKIDGLDYHIVENALEQARKGRLHILNEMEKAIPASRT 563
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
L+ +AP + +K+ + I ++IG GG+ ++ I EETG E I+ DDGTV I
Sbjct: 564 DLATYAPRLTTIKIPSDCIGMVIGKGGETIRGITEETGAE-INIADDGTVTIACTTKEGT 622
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+ + A I +LT P VG+IY G FVE P +GL HISE+SS +AK D
Sbjct: 623 DAALATIKSLTAKPEVGNIYVGKVRDVRDELGAFVEFLPKTDGLVHISEISSTRVAKVSD 682
Query: 808 VVKVGDLVDVKLIEV-----NDKGQLRLSRRAL 835
+KVGD V VKL++V K + LS +AL
Sbjct: 683 HLKVGDKVTVKLVDVRKDPRTGKTKFALSIKAL 715
>gi|296114408|ref|ZP_06833062.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
hansenii ATCC 23769]
gi|295979169|gb|EFG85893.1| polynucleotide phosphorylase/polyadenylase [Gluconacetobacter
hansenii ATCC 23769]
Length = 710
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 316/750 (42%), Positives = 439/750 (58%), Gaps = 61/750 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I +G R +++ETG + RQA GAV VT G+T++ + A DFFPL VNYQE+
Sbjct: 8 EIEWGGRPLILETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + EVL RLIDRP+RP F +E Q+++ VLS+D + P
Sbjct: 68 YAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPDNFRNEVQVVATVLSHDMENDPA 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ A+ LS VP + RVG + K+++NPT + ++S LDL++AG+++ +L
Sbjct: 128 IVALIGCSAALTLSGVPFFGPVGACRVGYIDGKYVLNPTIAQTKESALDLVVAGTEEGVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E LSE++++ AV G +A +++ + + L E K P +L
Sbjct: 188 MVESEAAELSEKVMLGAVTFGHEAFQDVIDAIIELAEHAAKA---------PWDLV---- 234
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDED 392
E + EE +K+ + K+ R+ + +E+V + + +KD +L D
Sbjct: 235 EPSAEE-IKLRKKIEKLGRKAIAEAYQERVKQVRYKKVAAAKDA----------ILAKLD 283
Query: 393 EDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDG 452
E + + P+L KE+ + +R ++E G R DG
Sbjct: 284 PAE------------------AEAAKPLL----------KELEANVVRSAVLETGHRIDG 315
Query: 453 RFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFY 512
R IRPI S G+LPRAHGSALFTRGETQ+L + TLG Q Q ID LE + F
Sbjct: 316 RDLKTIRPIVSEVGILPRAHGSALFTRGETQALVIATLGTGQDEQVIDALEGEYRTN-FM 374
Query: 513 LQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGS 572
L Y+FPP SVGE GR+G+P RREIGHG LA RA+ P+LP + FPYT+RV S ITESNGS
Sbjct: 375 LHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKDTFPYTMRVVSEITESNGS 434
Query: 573 SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDM 632
SSMA+VCG LAL DAGVP+K +AG+AMG++ + +EF +LSDI G ED GDM
Sbjct: 435 SSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEEEEFA------VLSDILGDEDHLGDM 488
Query: 633 DFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKH 692
DFKVAG E+GITA QMDIK+ IT +M+ AL QA+ GR HIL EM K + +S
Sbjct: 489 DFKVAGTENGITALQMDIKITSITPEIMEIALDQARGGRMHILGEMSKALTEGRSDVSSS 548
Query: 693 APLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKA 752
AP I + V EKI +IG GGK ++ I+E +G + ID DDGT+ I A EK+
Sbjct: 549 APKITTISVPKEKIRDVIGQGGKVIREIVEYSGAK-IDINDDGTIMIAASSDEQAEKAIE 607
Query: 753 IISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVG 812
I + P +G IY N ++ A +G FV R+GL HISEL+ +AK DVVK G
Sbjct: 608 RIRGIVAEPEIGKIY-NGKVVKTADFGAFVNFLGPRDGLVHISELAQGRVAKTTDVVKQG 666
Query: 813 DLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
D V VK++ +D+G+++LS R + E A+
Sbjct: 667 DEVKVKVLGFDDRGKVKLSMRVVDQETGAD 696
>gi|229174473|ref|ZP_04302005.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|423401351|ref|ZP_17378524.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-2]
gi|423458010|ref|ZP_17434807.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X2-1]
gi|423477945|ref|ZP_17454660.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-1]
gi|228609033|gb|EEK66323.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus MM3]
gi|401148394|gb|EJQ55887.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG5X2-1]
gi|401654341|gb|EJS71884.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG2X1-2]
gi|402428107|gb|EJV60204.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus
BAG6X1-1]
Length = 712
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 302/743 (40%), Positives = 444/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
++ +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MSEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V SE+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQV-------------------SEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|406878401|gb|EKD27315.1| hypothetical protein ACD_79C00762G0003 [uncultured bacterium]
Length = 692
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 320/754 (42%), Positives = 450/754 (59%), Gaps = 74/754 (9%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
+V + F +++ +ETG + +QA GAVTV G+TI+ +V + + DFFPL V+Y+E
Sbjct: 5 NVTMNFFGKELTIETGKLAKQADGAVTVRLGDTIVLVTVVASKSVKDDQDFFPLTVDYRE 64
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
RF+AAG+ GG+ KRE + E+LV RL DRPLRP GF +E Q+ V+S D +
Sbjct: 65 RFTAAGKFKGGYLKRESKPTQKEILVARLTDRPLRPLFADGFLNEVQVDVMVISADQKND 124
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
D L A A+ LS +P + + GVRVG V K I+NPT +E S ++L++AG++
Sbjct: 125 SDVLTTIGASAALCLSSIPFNGPVGGVRVGRVDGKLIINPTVEERSKSDIELMMAGNEMG 184
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP--PELY 328
ILM+EG+ + +SEE +++A+ G DA++ + + K L+ P KL P EL
Sbjct: 185 ILMVEGFANLISEEEVLEALDFGYDAIKVLLDFQKQLINKL--PSKKAEWKLFPVDKELV 242
Query: 329 KHVE-EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
K ++ +++ L + L IK K R +AL TIL N ++K I E PD+
Sbjct: 243 KIIKSKVSESNLKEALYIKGKHERSEALE-------TIL--NDLIAK-----ITEENPDI 288
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
S+ +K FKEV + LR+ I+ G
Sbjct: 289 -----------------------------------SQAKIKSTFKEVEKELLRKIILSEG 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R+DGR IR I GLLP HGSA+FTRGETQ+LAV TLG + +Q+ +++ +D E
Sbjct: 314 IRADGRGLRDIRKIWIETGLLPCTHGSAVFTRGETQALAVATLGGSKDSQKAEDINADIE 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+ FYL Y+FP SVGE P RREIGHG LA+R L PV+P +FPY IR+ S I
Sbjct: 374 -EHFYLHYNFPGFSVGECKPNRGPGRREIGHGELAQRGLTPVVPKKTEFPYVIRLTSDIL 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMA+VC G LA+ DAGVPIK S++G+AMG++ + D+ ILSDI G ED
Sbjct: 433 ESNGSSSMATVCAGTLAMMDAGVPIKQSVSGIAMGLIKEDDKVA------ILSDILGLED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
+ GDMDFKV G +GI+AFQMDIK+ G+T +MK+AL+QA +GR HIL+EM K P
Sbjct: 487 SLGDMDFKVIGTRNGISAFQMDIKIEGLTRDIMKQALKQATEGRLHILSEMDKALSSP-R 545
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
LSK+AP I +KV EKI IIG GGK ++ + E+ GV AID DDG V I D
Sbjct: 546 ELSKNAPSIIHIKVPTEKIGFIIGPGGKNIRGLSEKFGV-AIDITDDGIVTIQCDD---- 600
Query: 748 EKSKAIISNLTMVPTVGDI-----YRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
+KA+++ + ++ +I Y+ +KSI P+G FVE PG+E L HIS +S + +
Sbjct: 601 -SAKALLAKEEIQLSISEIEKDKVYKGI-VKSITPFGAFVECLPGKEALLHISRISKDRI 658
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALL 836
+ DV+K GD ++VK I++++KG+ LSR+ALL
Sbjct: 659 NQVTDVLKEGDEIEVKCIDIDEKGRAVLSRKALL 692
>gi|344923813|ref|ZP_08777274.1| polynucleotide phosphorylase/polyadenylase [Candidatus Odyssella
thessalonicensis L13]
Length = 709
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 314/747 (42%), Positives = 438/747 (58%), Gaps = 67/747 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I F R++++ETG + RQA GAV + G+T + +V + + FFPL+V+Y E+
Sbjct: 11 EIDFAGRKLVLETGRIARQADGAVVASYGDTSVLCTVVASRKVAAGQSFFPLSVHYLEKT 70
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
A GR GGF KREG+ + EVL RLIDRPLRP +GF++E Q++ VLS+D ++ P
Sbjct: 71 FAVGRIPGGFNKREGKPTEKEVLNSRLIDRPLRPLFPEGFFNEVQVVCTVLSHDLINDPA 130
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
A+ A A+ALS +P IAG VG V +++NPT ++ S+LDL +AG+ + +L
Sbjct: 131 IPAMIGASAALALSGLPFLGPIAGASVGYVDGAYVLNPTPEQAAASKLDLFVAGTAEGVL 190
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE----LY 328
M+E L EE+++ AV G A + I +KA+ + K D E LY
Sbjct: 191 MVESEAKELPEEVMLGAVDFGHAAFQPI---IKAIKSLKKKAGKKDWTVTGLGEDYQDLY 247
Query: 329 KHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLL 388
K +++ ++L K I K R A+ + EKVL E VG++E
Sbjct: 248 KKIKKTIEKDLKKAYSITTKAERYAAVDAAYEKVL------------EKVGVLEG----- 290
Query: 389 EDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGR 448
E++ + F+ + S+ +R I+ G+
Sbjct: 291 ----------------------------------QELNFDMAFEALKSEVVRADILGQGK 316
Query: 449 RSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEV 508
R DGR +RPI + G+LPR HGS LFTRGETQ+L V TLG Q Q ID LE +
Sbjct: 317 RVDGRDLKTVRPIDVQVGVLPRTHGSTLFTRGETQALVVSTLGTAQDEQMIDALEGEYR- 375
Query: 509 KRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITE 568
+RF L Y+FPP SV E GR+ P RREIGHG LA RA+ P+LP+ + FPYT+R + ITE
Sbjct: 376 ERFMLHYNFPPFSVNETGRMSGPGRREIGHGKLAWRAIRPLLPTKDQFPYTVRTVAEITE 435
Query: 569 SNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDA 628
SNGSSSMA+VCG L+L DAGVP+ S+AG+AMG+V + +F +L+DI G ED
Sbjct: 436 SNGSSSMATVCGTSLSLMDAGVPLPRSVAGIAMGLVKEGKKFA------VLTDILGDEDH 489
Query: 629 SGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNS 688
GDMDFKVAG E GITA QMDIK+ IT +MK AL+QAKDGR HIL EM K S
Sbjct: 490 LGDMDFKVAGTEVGITALQMDIKITSITSEIMKAALEQAKDGRLHILGEMAKALSSSRQS 549
Query: 689 LSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLE 748
+S+HAP + M + +KI IIG GGK ++ I E +G ID +D+G V I+ D S+E
Sbjct: 550 VSEHAPQMTSMPINRDKIRDIIGPGGKTIREICEVSGAR-IDIDDEGVVNISGFDSKSIE 608
Query: 749 KSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDV 808
+K++I N+ P VG+IY +K + +G FV R+GL HISEL++ +AK DV
Sbjct: 609 TAKSMIRNIACDPVVGEIYTGKVVK-VMDFGAFVNFMGNRDGLVHISELATERVAKVTDV 667
Query: 809 VKVGDLVDVKLIEVNDKGQLRLSRRAL 835
V+VGD V VK++ +D+G+++LS +AL
Sbjct: 668 VQVGDEVKVKVVGFDDRGKVKLSIKAL 694
>gi|381179449|ref|ZP_09888301.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
gi|380768623|gb|EIC02610.1| polyribonucleotide nucleotidyltransferase [Treponema saccharophilum
DSM 2985]
Length = 700
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 318/746 (42%), Positives = 433/746 (58%), Gaps = 65/746 (8%)
Query: 92 VKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQER 151
V G+ ++++ETG +G+QA+G V + +VC + E DF P+ V Y E+
Sbjct: 6 VTYKIGNDELVLETGKIGKQANGCVYAQFAGAAVVATVCASSEVKEGLDFVPVTVEYNEK 65
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
+ AAG+ GGF KREGR KD E+LV RLIDRP+RP F E QI+ +S DG++ P
Sbjct: 66 YYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEPSFGREIQIVPTCVSSDGVNPP 125
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
D LAV A+ AV++S++P +A RV + +++NPT ++ E++ L++++AG+ D
Sbjct: 126 DILAVIASSAAVSISDIPFHGPVAAARVAYLNGDYVINPTFKQQEEADLEIVVAGTKDGF 185
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
M+EG + +SEE+++ A++ Q + + + LV CGK KLP L +
Sbjct: 186 TMVEGGANEVSEEIMLGALEKAQGFITAMCELQEQLVAKCGKE------KLPLAPLNVEL 239
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E R AL I E P LLE
Sbjct: 240 E------------------NRDAL------------------------IAEATP-LLE-- 254
Query: 392 DEDEEVVVDGEVDEG---DVHIKPKSRKSTPMLFSEVDVKL---VFKEVTSKFLRRRIVE 445
+ DG+++ G + EV KL + ++ LR+ I++
Sbjct: 255 ---KACFQDGKMNRGRAIAIAKAQIIENHKEQFADEVQKKLFDQCYDDIQYNLLRKSILD 311
Query: 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESD 505
G R DGR D IRPI+ +LPR HGSALFTRGETQSLAV TLG AQ +D+++ +
Sbjct: 312 KGIRIDGRKCDEIRPITCEVNVLPRPHGSALFTRGETQSLAVCTLGTAMDAQILDDIDGE 371
Query: 506 DEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVEST 565
+ F L Y+FPP SVGEVGR+ RREIGHG LA R+L P++PS +FPYT+RV S
Sbjct: 372 RS-ENFILHYNFPPYSVGEVGRL-TTGRREIGHGNLARRSLAPMIPSMEEFPYTVRVVSE 429
Query: 566 ITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGS 625
I ESNGSSS AS CGGCLAL AGVP+K +AG+AMG++ + + G ILSDI G
Sbjct: 430 IMESNGSSSQASTCGGCLALLAAGVPMKKMVAGIAMGLITEQEGDNPYGRYQILSDILGE 489
Query: 626 EDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPP 685
ED GDMDFKVAG +DGIT FQMDIK+ G+T +MKKAL QAK GR HIL+ M KC P
Sbjct: 490 EDHLGDMDFKVAGTKDGITGFQMDIKIAGVTTEIMKKALAQAKAGRLHILSIMEKCIDRP 549
Query: 686 SNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLS 745
+S AP I MK+ P+KI +IG GGK +K++ + GV I+TEDDGTV+I K
Sbjct: 550 -QPISPFAPKILSMKISPDKIGALIGPGGKNIKALCAQYGV-TINTEDDGTVQIYGKTGK 607
Query: 746 SLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKA 805
+ E++K + + P VG IY N +K I +G FVEI PG+EGLCHIS+LS + K
Sbjct: 608 AAEEAKLAVKGICEDPEVGTIY-NGTVKRIMDFGAFVEILPGKEGLCHISKLSRQRVEKV 666
Query: 806 EDVVKVGDLVDVKLIEVNDKGQLRLS 831
DV+K G + VKL+EV+ G+L LS
Sbjct: 667 TDVLKEGQQIPVKLLEVDKMGRLNLS 692
>gi|336125013|ref|YP_004567061.1| polyribonucleotide nucleotidyltransferase [Vibrio anguillarum 775]
gi|365539342|ref|ZP_09364517.1| polynucleotide phosphorylase/polyadenylase [Vibrio ordalii ATCC
33509]
gi|335342736|gb|AEH34019.1| Polyribonucleotide nucleotidyltransferase [Vibrio anguillarum 775]
Length = 708
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 305/752 (40%), Positives = 436/752 (57%), Gaps = 66/752 (8%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
F +PV +G+ + +ETG + RQA+ AV VT +T ++ SV E DFFPL
Sbjct: 2 FDKPVVKSFQYGNHTVTLETGVIARQATSAVMVTMNDTAVFVSVVGKKEAVEGQDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
VNYQER AAG+ GGFFKREGR + E L RLIDRP+RP F +E Q+++ V+S
Sbjct: 62 VNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNAFKNEVQVIATVMSV 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLA 265
+ PD + + A+A+S +P + I RVG + + ++NP+ E+ S+LDL++A
Sbjct: 122 NPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSMTELAVSRLDLVVA 181
Query: 266 GSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP 325
G+D+A+LM+E D L+EE ++ AV G D + + +KA+ E + + P
Sbjct: 182 GTDNAVLMVESEADNLTEEEMLAAVVYGHDQQQAV---IKAINEFAAEVATPAWDWVAPQ 238
Query: 326 E---LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKV-LTILSENGYVSKDETVGIV 381
E L + E+A +LV+ +I K+ R + + +V IL+E
Sbjct: 239 ENTVLNSKIAELAEAKLVEAYKITEKMARYDRIHEIAAEVNKVILAE------------- 285
Query: 382 ETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRR 441
D E + ++H +F ++ +RR
Sbjct: 286 ------------------DPEANAKEIHT-------------------IFHDLEKTVVRR 308
Query: 442 RIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDN 501
I+ G R DGR D +R + R G+LPR HGSALFTRGETQ++ TLG ++ AQ ID
Sbjct: 309 SIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGTQRDAQIIDE 368
Query: 502 LESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIR 561
L + + F L Y+FPP VGE G +G+P RREIGHG LA+R + V+PS +FPYT+R
Sbjct: 369 LTGERK-DNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVEEFPYTVR 427
Query: 562 VESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSD 621
V S ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSD
Sbjct: 428 VVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDF------VVLSD 481
Query: 622 ITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKC 681
I G ED GDMDFKVAG GITA QMDIK+ GIT +M+ AL QA+ R+HIL+ M +
Sbjct: 482 ILGDEDHLGDMDFKVAGTNQGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDQA 541
Query: 682 SPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITA 741
+S+ AP I+ MK+ EKI +IG GG ++++ EETG I+ EDDGT+KI A
Sbjct: 542 ISGARAEISEFAPRIYTMKISSEKIKDVIGKGGAVIRALTEETGT-TIEIEDDGTIKIAA 600
Query: 742 KDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNW 801
D + +++ I +T VG IY ++ +A +G FV I PG++GL HIS+++
Sbjct: 601 TDSAQAKEAIRRIEEITAEVEVGAIY-TGKVARLADFGAFVNILPGKDGLVHISQIADQR 659
Query: 802 LAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRR 833
+ K D +K G V VK++E++ +G++RLS +
Sbjct: 660 IEKVSDYLKEGQEVQVKVLEIDRQGRVRLSMK 691
>gi|256830187|ref|YP_003158915.1| polyribonucleotide nucleotidyltransferase [Desulfomicrobium
baculatum DSM 4028]
gi|256579363|gb|ACU90499.1| Polyribonucleotide nucleotidyltransferase [Desulfomicrobium
baculatum DSM 4028]
Length = 736
Score = 537 bits (1384), Expect = e-149, Method: Compositional matrix adjust.
Identities = 306/747 (40%), Positives = 433/747 (57%), Gaps = 64/747 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
IP GD +I++E G + QASGAVTV G+T++ + + DF PL NYQE
Sbjct: 11 IPMGDSEIIIEHGKLALQASGAVTVQWGDTVVLVTATHQAL-DRVVDFLPLTCNYQEMLY 69
Query: 154 AAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AGR G +F+RE GR +HE L RL+DRP+RP KG +E Q+++ V+S D D
Sbjct: 70 SAGRVPGNYFRREVGRPSEHETLTSRLMDRPIRPLFPKGCTNEIQVIATVISSDKERSAD 129
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ A A+ +SE+P + IA +RVG KF++NPT E+ SQL+++LAGS DA++
Sbjct: 130 ILAMLGASTALHISEIPFAGPIAAIRVGYRDGKFLLNPTATELATSQLNMILAGSRDAVV 189
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+EG FLSE+++ +AV G + + + + L + G+ K T PP E + +E
Sbjct: 190 MVEGGAQFLSEDIMTEAVAWGHAQLGPLLDAQEELRKELGREKFTVT---PPTEDTELIE 246
Query: 333 EIAG---EELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+AG L + L + K+ RR A +++ ++ L + + G+ E
Sbjct: 247 AVAGLATAPLTEALAVPGKMDRRDAKKKVKQNLMEALMAKYAETPERIRGVGE------- 299
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+ +++ K +R+RI+ R
Sbjct: 300 ----------------------------------------IMEKLEKKIVRQRIMTDKIR 319
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RP+ G LPR HGSA+FTRGET++L TLG + QRI+ L D +
Sbjct: 320 IDGRDLTTVRPLIMEVGFLPRTHGSAIFTRGETKALCTCTLGSTRDEQRIETLAGDTS-R 378
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF + Y+FPP SVGE + AP RREIGHG L+ERAL PVLP + FP+TIRV S I ES
Sbjct: 379 RFLMHYNFPPYSVGEARMLRAPGRREIGHGALSERALNPVLPEPDAFPFTIRVVSDIMES 438
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGG LAL DAGVPIK IAG+AMG++ + DE+ L+L+DI G ED
Sbjct: 439 NGSSSMASVCGGTLALMDAGVPIKTPIAGIAMGLIKEGDEY------LVLTDILGDEDHL 492
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG+ DG+T+ QMDIK+ GI VM+KAL QAKD R HIL +M P L
Sbjct: 493 GDMDFKVAGSRDGVTSIQMDIKIAGIPAEVMQKALHQAKDARVHILDQMEALIAAPRGEL 552
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
SK AP + I+ + +KI +IG GGK +K+I E T + ID +D G + I A D SL K
Sbjct: 553 SKFAPQMDIVHISQDKIREVIGPGGKNIKAICEATKAD-IDIDDSGKISIFAPDSVSLAK 611
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ ++ + Y +K I +G F+EI PG EGLCHIS+L+ + + DVV
Sbjct: 612 AREMVLYYDQKAELNKDYDGI-VKKIMDFGAFIEILPGLEGLCHISQLARDRVNVVTDVV 670
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRALL 836
+ GD + V++I++ G+++LSR+A++
Sbjct: 671 QEGDAIRVRVIDIEPSGRIKLSRKAII 697
>gi|84684402|ref|ZP_01012303.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
alkaliphilus HTCC2654]
gi|84667381|gb|EAQ13850.1| polyribonucleotide nucleotidyltransferase [Maritimibacter
alkaliphilus HTCC2654]
Length = 716
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 317/761 (41%), Positives = 438/761 (57%), Gaps = 72/761 (9%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V I +G+ + +ETG + RQA G V T GET + +V A E DFFPL V+YQ
Sbjct: 5 VKKSIQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFAKQQKEGQDFFPLTVHYQ 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E++ AAG+ GGFFKRE R + E L RLIDRP+RP ++GF +E ++ VLS+D ++
Sbjct: 65 EKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVEGFKNEVLVMCTVLSHDLVN 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLL 263
PD +A+ AA A+ +S P IAG RVG ++++NPT +M D +LDL+
Sbjct: 125 DPDIVAMIAASAALTISGAPFMGPIAGARVGYEDGEYVLNPTCDDMHDLRNNPDQRLDLV 184
Query: 264 LAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLP 323
+AG+ DA++M+E L+E ++ AV + ++ + + + L E K +
Sbjct: 185 VAGTKDAVMMVESEAYELTEAEMLGAVTFAHEQIQPVIDLIIDLAEDSAK----EPFDFA 240
Query: 324 PPELYKHVEEI--AGEELVKV-LQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGI 380
P+ E + AGE+ V+ I +K R A+++ +E++ L+
Sbjct: 241 APDYSAIFEAVKAAGEDKVRAAYAITDKQERVAAVAAAKEEIKASLT------------- 287
Query: 381 VETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLR 440
EE + D P L + K++ S LR
Sbjct: 288 --------------EEQLAD------------------PSLGT------ALKKLESSVLR 309
Query: 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
+V+ G+R DGR D +RPI + GLLPR HGSALFTRGETQ L V TLG Q ID
Sbjct: 310 GSVVKEGKRIDGRALDQVRPILAEVGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQMID 369
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
L + F L Y+FPP SVGEVGR+G+P RREIGHG LA RAL+ VLP+ DFPYTI
Sbjct: 370 ALTGTYK-SNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAATDFPYTI 428
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
RV S ITESNGSSSMASVCGG L++ DA VP+K +AGVAMG+VL+ DG+ +L+
Sbjct: 429 RVVSEITESNGSSSMASVCGGSLSMMDAAVPLKAPVAGVAMGLVLED-----DGSYAVLT 483
Query: 621 DITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
DI G ED GDMDFKVAG E+GIT+ QMDIKV GIT +M+KAL QAKDGR HIL EM K
Sbjct: 484 DILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALAQAKDGRMHILGEMNK 543
Query: 681 CSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKIT 740
S HAP I M V +KI +IGSGGK ++ I+E +G + +D DDG +KI
Sbjct: 544 ALSAGRTEFSAHAPRIETMTVPTDKIREVIGSGGKVIREIVEVSGAK-VDINDDGVIKIA 602
Query: 741 AKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSN 800
+ + S++K+ +I + P G +Y+ +K I +G FV R+GL H+S++ +
Sbjct: 603 SPNNDSIQKAYDMIHAIVAEPEEGQVYKGKVVK-IVDFGAFVNFFGKRDGLVHVSQIENR 661
Query: 801 WLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
L DV+K G V VKL+ +D+G++RL+ + + E A
Sbjct: 662 RLNHPSDVLKEGQEVYVKLLGFDDRGKVRLAMKMVDQETGA 702
>gi|339505349|ref|YP_004692769.1| polyribonucleotide nucleotidyltransferase [Roseobacter litoralis
Och 149]
gi|338759342|gb|AEI95806.1| polyribonucleotide nucleotidyltransferase Pnp [Roseobacter
litoralis Och 149]
Length = 711
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 314/755 (41%), Positives = 432/755 (57%), Gaps = 67/755 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I +G+ + +ETG + RQA G+V T GET + +V A DFFPL V+YQE++
Sbjct: 9 IEWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKPGQDFFPLTVHYQEKYY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKRE R + E L RLIDRPLRP + GF +E ++ VLS+D ++ PD
Sbjct: 69 AAGKVPGGFFKREARPTEKETLTARLIDRPLRPLFVPGFKNEVLVMCTVLSHDLVNDPDM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMED------SQLDLLLAGS 267
+A+ AA A+ +S P IAG RVG G ++++NPT +M+D +LDL++AG+
Sbjct: 129 VAMIAASAALTISGAPFMGPIAGCRVGYEGGEYVLNPTVDDMQDLRLNPEQRLDLVVAGT 188
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
DA++M+E LSE ++ AV+ DA++ + + + L E K + D EL
Sbjct: 189 KDAVMMVESEAYELSEAEMLGAVKFAHDAIQPVLDLIIDLAEDTAK-EPFDFAPADYSEL 247
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDL 387
V+ E+ I +K R A+S+ + ++ L++
Sbjct: 248 SAAVKAAGETEMRAAFAISDKQERTSAVSAARDTIMAALTDE------------------ 289
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
+K P L S K + LR +V+ G
Sbjct: 290 ---------------------------QKEDPNLGS------AMKGLEGSILRGDVVKTG 316
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR D IR I S GLLPR HGSALFTRGETQ L V TLG Q ID L + +
Sbjct: 317 TRIDGRKTDEIRDIVSETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNFK 376
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
F L Y+FPP SVGE GR+G P RREIGHG LA RAL+ VLP+ DFPYT+RV S IT
Sbjct: 377 -SNFLLHYNFPPYSVGEAGRVGPPGRREIGHGKLAWRALQAVLPAATDFPYTVRVVSEIT 435
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCGG L++ DAGVP+K +AGVAMG++L+ DG+ ILSDI G ED
Sbjct: 436 ESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEE-----DGSYAILSDILGDED 490
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG E GIT+ QMDIK+ GIT +M+KAL+QAK GR HIL EM K +
Sbjct: 491 HLGDMDFKVAGTEAGITSLQMDIKIAGITPEIMEKALEQAKAGRIHILGEMAKAI-TGAQ 549
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
S HAP I M++ +KI +IGSGGK ++ I+E +G + +D D+G +KI + + ++
Sbjct: 550 DFSIHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAK-VDINDEGIIKIASPNGEAI 608
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
+K+ +I ++ P G +Y +K I +G FV R+GL H+S++ + L D
Sbjct: 609 KKAYDMIHSIVAEPEEGMVYTGTVVK-IVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSD 667
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
V+K G V VKL+ +D+G++RLS + + E E
Sbjct: 668 VLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEE 702
>gi|187479141|ref|YP_787166.1| polynucleotide phosphorylase/polyadenylase [Bordetella avium 197N]
gi|123765982|sp|Q2KWI6.1|PNP_BORA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|115423728|emb|CAJ50278.1| polyribonucleotide nucleotidyltransferase [Bordetella avium 197N]
Length = 718
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 315/746 (42%), Positives = 436/746 (58%), Gaps = 53/746 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
V+ +G +++ETG + RQASGAV V+ +T++ +V A DFFPL V+Y
Sbjct: 5 VTKTFQYGQHTVVLETGEIARQASGAVLVSVEDTVVLATVVAAKKAKPGQDFFPLTVDYI 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E+ AAGR GGFFKREG+ + E L RLIDRPLRP +GFY+E Q++ LS +
Sbjct: 65 EKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNEVQVVIHTLSVNPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+A+S +P + I RV V ++++NPT +++ S++DL++AG+++
Sbjct: 125 DPDIPAMIGASAALAISGIPFNGPIGAARVAYVEGQYLLNPTASQLKSSKMDLVVAGTEN 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A+LM+E LSEE+++ V G + ++ N + LV GKP+ + L
Sbjct: 185 AVLMVESEAQQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPEWTWSPAAKNEALIA 244
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
V A E L QI+ K R L + + V
Sbjct: 245 AVTAAAQEGLSAAYQIREKQARTTKLREVYAE----------------VSAKLAEQAAAA 288
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
+D + V VD +LF +++ +LV R +I+ G R
Sbjct: 289 GQDAPDGVTVDN------------------ILF-DLEARLV---------RSQILNGEPR 320
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR +RPIS R G+LPRAHGSALFTRGETQ+L V TLG KQ Q ID L +
Sbjct: 321 IDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYR-D 379
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y+ PP + GE GRIG P RREIGHG LA+R+L PVLP DF YTIR+ S ITES
Sbjct: 380 RFMLHYNMPPFATGETGRIGVPKRREIGHGRLAKRSLVPVLPKPEDFQYTIRIVSEITES 439
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMASVCGG LA+ DAGVPI +AGVAMG++L+ +F +L+DI G ED
Sbjct: 440 NGSSSMASVCGGSLAMMDAGVPITDHVAGVAMGLILENGKFA------VLTDILGDEDHL 493
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG E+GITA QMDIK+ GIT +M+ AL QA++GR HIL +M + L
Sbjct: 494 GDMDFKVAGTENGITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRESLDGSRTEL 553
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
S AP + +K+ PEKI +IG GG ++++ EETG + ID DDGT+ I + D ++
Sbjct: 554 SAFAPRMLTIKINPEKIRDVIGKGGATIRALTEETGTQ-IDISDDGTIVIASVDEGQAKE 612
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
++ I LT VG +Y ++ + +G V++ PGR+GL HISE+++ +A DV+
Sbjct: 613 AQRRIVELTADVEVGQVYDGSVLR-LLDFGAIVQVLPGRDGLLHISEIANYRIANINDVL 671
Query: 810 KVGDLVDVKLIEVNDKGQLRLSRRAL 835
KVG V VK+IE ++KG+LRLS +A+
Sbjct: 672 KVGQQVRVKVIEADEKGRLRLSVKAI 697
>gi|212703635|ref|ZP_03311763.1| hypothetical protein DESPIG_01680 [Desulfovibrio piger ATCC 29098]
gi|212672930|gb|EEB33413.1| polyribonucleotide nucleotidyltransferase [Desulfovibrio piger ATCC
29098]
Length = 750
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 444/758 (58%), Gaps = 70/758 (9%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDF----FP 143
P V G ++I+ ETG + QA GAV V G T++ +VC S+P +F FP
Sbjct: 7 NPTRVTATVGGKEIIFETGRLANQAHGAVWVQCGGTVVLVTVC-----SQPLEFDKGFFP 61
Query: 144 LNVNYQERFSAAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWV 202
L V Y E+ AAGR G FF+RE GR + E LV RLIDRP+RP KG + Q+L+ V
Sbjct: 62 LTVEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLNEDVQVLASV 121
Query: 203 LSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDL 262
+S D + D LA+T A AV LS +P +AG R+G + +F++NPT +E E S L++
Sbjct: 122 ISADQENESDVLALTGASAAVMLSPLPFEGPVAGGRIGRIDGQFVLNPTFEEQERSDLNI 181
Query: 263 LLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKL 322
+ A S DA+ M+EG F+ E+++I A++ G+ ++ + + L E+ GK KM T
Sbjct: 182 VFAASRDALTMVEGEATFVPEDVIIDALEWGRKEIQPLIDAQLKLRELAGKEKMPFTPHQ 241
Query: 323 PPPELYKHVEEIAGEELVK-VLQIKNKIPRRKALSSLEEKVL-TILSENGYVSKDETVGI 380
P L V+E+A E ++ L++ K+ R+ A ++++KV+ +L++ + + +
Sbjct: 242 DDPVLVARVQELAREAGIEEALRVPEKLARKDARKAVKDKVMEALLNDPAWAESEALKEV 301
Query: 381 VETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLR 440
E I DL K +R
Sbjct: 302 GEIIGDL-----------------------------------------------EKKIMR 314
Query: 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRID 500
RIV G R DGR +RPI + +LPRAHGSA+F RGET+SL V TLG QR+
Sbjct: 315 ARIVNEGVRIDGRDTKTVRPIQIQTSVLPRAHGSAIFRRGETKSLVVTTLGSSTDEQRMG 374
Query: 501 NLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560
+L S D KRF L Y+FPP SVGEV + SRREIGHG LAE++L PV+P+D DFP+T+
Sbjct: 375 SL-SGDVTKRFMLHYNFPPFSVGEVKPVRV-SRREIGHGALAEKSLRPVMPADADFPFTV 432
Query: 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILS 620
RV S ESNGSSSMA+VCGGCL+L DAG+PI +AGVAMG++ + D+F ++L+
Sbjct: 433 RVVSETVESNGSSSMAAVCGGCLSLMDAGIPISAPVAGVAMGLIKEGDKF------IVLT 486
Query: 621 DITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLK 680
DI G EDA GDMDFK+AG +G+T QMDIK+ G+T +M++A+QQA +GR HILAEM K
Sbjct: 487 DILGDEDALGDMDFKIAGTAEGVTGVQMDIKITGLTTDIMRQAMQQAHEGRLHILAEMAK 546
Query: 681 CSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKIT 740
P P LS++AP + V P+ I LIIG GGK +K+I TG ++D ED G V I
Sbjct: 547 ALPEPRKELSRYAPQHAEIFVNPDIIRLIIGPGGKNIKAITTATGA-SVDIEDSGRVSIF 605
Query: 741 AKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSN 800
A +LEK++ +++ P +G Y ++K I G VE+ P E L H+S+L N
Sbjct: 606 APTADALEKAREMVTYYDQRPELGKNY-TAKVKKIMEIGAIVEVLPNVEALVHVSQLDVN 664
Query: 801 WLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPE 838
+ + DV ++G+ + VK+IE+N ++R SR+A+L E
Sbjct: 665 RVEQPGDVARLGEDMVVKVIEINGD-RIRASRKAVLLE 701
>gi|56963987|ref|YP_175718.1| polynucleotide phosphorylase [Bacillus clausii KSM-K16]
gi|81366005|sp|Q5WFU8.1|PNP_BACSK RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|56910230|dbj|BAD64757.1| polyribonucleotide nucleotidyltransferase [Bacillus clausii
KSM-K16]
Length = 710
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 305/747 (40%), Positives = 443/747 (59%), Gaps = 64/747 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSD--FFPLNVNYQER 151
I + R + VE G + +QA+GAV V G+T + ++ A EP D FFPL VNY+ER
Sbjct: 10 IDWAGRTLSVEVGQLAKQANGAVLVRYGDTAVLST---ATASKEPKDLPFFPLTVNYEER 66
Query: 152 FSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFP 211
AAG+ GGF KREGR + +L RLIDRP+RP GF ++ Q++S V+S D P
Sbjct: 67 LYAAGKIPGGFIKREGRPSERAILTSRLIDRPIRPLFPDGFRNDVQVISIVMSSDQDASP 126
Query: 212 DALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAI 271
+ A+ + +A+ +S++P IAGV VG + +FI+NPT ++ +S +DL +AG+ +AI
Sbjct: 127 EMAAMIGSSLALCVSDIPFEGPIAGVTVGRINGEFIMNPTPAQLAESDIDLTVAGTKEAI 186
Query: 272 LMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHV 331
M+E + E+++++A+ G + ++++ + +VE+CGK K +K EL +
Sbjct: 187 NMVEAGAKEVPEDVMLEAILAGHENIKKMIAFQEKVVEVCGKEKREVQLKTFDAELEARL 246
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E A + + ++I K R+ A+ E I +E
Sbjct: 247 RESAEASIKEAVRIAEKHARQDAID-------------------------EIIAAQVEQH 281
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+D+ + VD +VK + + + +RR I R D
Sbjct: 282 SDDDSINVD-------------------------EVKEILQMFVKEEVRRLITVEKIRPD 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR D IRP+SS+ LLPR HGS LFTRG+TQ+L+V TLG Q +D L +E KRF
Sbjct: 317 GRGVDEIRPLSSQIKLLPRTHGSGLFTRGQTQALSVCTLGALGDVQVLDGL-GIEETKRF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVGE G I AP RREIGHG L ERALE V+PS+ +FPYTIR+ S + ESNG
Sbjct: 376 MHHYNFPQFSVGETGPIRAPGRREIGHGALGERALEQVIPSEQEFPYTIRLVSEVLESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S AS+C LA+ DAGVPIK +AG+AMG+V + +L+DI G EDA GD
Sbjct: 436 STSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQGEHM------TVLTDIQGMEDALGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG +G+TA QMDIK+ GI V+++AL+QAK GR IL+ M++ P LS+
Sbjct: 490 MDFKVAGTANGVTALQMDIKISGINREVLEQALEQAKQGRMKILSNMMEAIDKPRAELSE 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I + + P+KI +IG GK + IIEETGV+ ID E DGTV I++ D + +K+K
Sbjct: 550 YAPKILTLTINPDKIRDVIGPSGKVINKIIEETGVK-IDIEQDGTVYISSLDTAMNQKAK 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
II +L VG+ Y + ++K I +G FVE+ G++GL HIS+++ + K EDV K+
Sbjct: 609 QIIEDLVREVQVGETY-HGKVKRIEKFGAFVELFKGKDGLLHISQIAEERINKVEDVFKL 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPE 838
GD VDV++ E++++G++ LSR+ LL E
Sbjct: 668 GDEVDVRVTEIDNQGRVNLSRKVLLKE 694
>gi|229168546|ref|ZP_04296269.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|423592197|ref|ZP_17568228.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
gi|228614952|gb|EEK72054.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus AH621]
gi|401232330|gb|EJR38832.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus VD048]
Length = 717
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 305/743 (41%), Positives = 439/743 (59%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ +ET + +QA+GAV V G+T + ++ + P DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTIETSQLAKQANGAVLVRYGDTAVLSTATASKEPKN-VDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKTAVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A ++ +Q+ K R A++ ++++V+ + E
Sbjct: 249 MAETDMHSAIQVHEKHAREDAINVVKKRVI--------------------------EHYE 282
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
+EV D T SE+ K+V +EV RR I R DGR
Sbjct: 283 AQEVDAD-----------------TLGQVSEILYKIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPVLPS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVLPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAKGVTALQMDIKIDGLSREILEEALQQAKIGRVHILNHMLSVIAEPRIELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + EK+K I
Sbjct: 554 PKIITMAINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNEKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYLG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
+ VK+IE++ +G++ LSR+ LL
Sbjct: 672 EISVKVIEIDKQGRVNLSRKVLL 694
>gi|320528964|ref|ZP_08030056.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
F0399]
gi|320138594|gb|EFW30484.1| polyribonucleotide nucleotidyltransferase [Selenomonas artemidis
F0399]
Length = 690
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 304/746 (40%), Positives = 440/746 (58%), Gaps = 59/746 (7%)
Query: 91 SVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQE 150
S +I G R I+VE G M +QA+GA V G+T++ + + P E DFFPL V+Y+E
Sbjct: 3 SFEIELGGRNIIVEHGKMAKQANGAALVRYGDTVVLVTATASSAPREGVDFFPLTVDYEE 62
Query: 151 RFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHF 210
+ AAG+ GGF KREGR + VL RLIDRP+RP +GF ++ QI++ VLS D +
Sbjct: 63 KMYAAGKIPGGFIKREGRPSNDAVLCARLIDRPIRPLFPEGFRNDVQIVATVLSVDQDNP 122
Query: 211 PDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDA 270
P+ A+ A A+ +S++P IAGVRVG + F++NP +E S+L+L +AGS DA
Sbjct: 123 PEIAAMLGASCALTVSDIPFMGPIAGVRVGYINGAFVINPKEEERAVSELNLTVAGSYDA 182
Query: 271 ILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKH 330
++M+E + LSEE+++ A+ G +R + K + CGK K + I EL +
Sbjct: 183 VMMVEAGANELSEEIVLDAILFGHAEIRRLVEFQKNIQSACGKEKQIPAIFAVSEELEEK 242
Query: 331 VEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLED 390
+ A E L + ++K+ R ++++ K ET+
Sbjct: 243 IRAYAEERLDAATRNEDKLGRDADIAAI---------------KSETM------------ 275
Query: 391 EDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRS 450
E +V+ P+ K + +++ +V +T + +R
Sbjct: 276 ----EHFIVE----------YPEQAKEISQILYKIEKGIVRHMITHEKIR---------P 312
Query: 451 DGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKR 510
DGR + +RP+S G+LPR HGS LFTRG+TQ L V TLG Q ID L + K
Sbjct: 313 DGRALNEVRPVSCEVGILPRTHGSGLFTRGQTQVLTVTTLGSIGDEQIIDGL-GPETTKH 371
Query: 511 FYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESN 570
+ Y+FP SVGE + +P RREIGHG LAERAL P++PS DFPYTIR+ S I ESN
Sbjct: 372 YLHHYNFPGYSVGEARPMRSPGRREIGHGALAERALFPMIPSIEDFPYTIRLVSEILESN 431
Query: 571 GSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASG 630
GSSSM SVCG L+L AGVPIK ++GVAMG+V D D++ IL+DI G EDA G
Sbjct: 432 GSSSMGSVCGSTLSLMCAGVPIKRPVSGVAMGLVRDGDDYS------ILTDIQGMEDALG 485
Query: 631 DMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690
DMDFKVAG GITA QMDIK+ GIT ++ AL QAK+GR IL +ML+C P+ LS
Sbjct: 486 DMDFKVAGTAKGITAIQMDIKIAGITRDILASALAQAKEGRAFILGKMLECIDKPAEELS 545
Query: 691 KHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKS 750
+AP + + + +KI +IGSGGK V+ II+ETGV+ ID +DG + IT+ + +++++
Sbjct: 546 PYAPRVETITIDVDKIRDVIGSGGKVVRKIIDETGVD-IDIHEDGNIFITSPNTEAMDRA 604
Query: 751 KAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVK 810
+ +I ++ VG+IY + +G FVE+ PG+EGLCHIS+L+ + + EDVV
Sbjct: 605 RKMIEDIVRDVEVGEIYTG-RVTRFLKFGAFVELLPGKEGLCHISQLAKHRVESVEDVVH 663
Query: 811 VGDLVDVKLIEVNDKGQLRLSRRALL 836
+GD + VK+IE+++KG++ +S + LL
Sbjct: 664 IGDELQVKVIEIDEKGRINVSHKVLL 689
>gi|285017812|ref|YP_003375523.1| polynucleotide phosphorylase [Xanthomonas albilineans GPE PC73]
gi|283473030|emb|CBA15535.1| probable polynucleotide phosphorylase protein [Xanthomonas
albilineans GPE PC73]
Length = 702
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 297/740 (40%), Positives = 437/740 (59%), Gaps = 56/740 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + I +VG ++I+NPT +++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTVSDLKDSQLELVVAGTSNAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
LSE++++ AV G ++++ N + L G + ++E
Sbjct: 190 SEAALLSEDVMLGAVTFGHREMQKVINAINELTAEAGTKPSDWVAPAKNAAMIVALKEAV 249
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
G +L Q+++K+ RR A++++++ VL L+
Sbjct: 250 GGQLAAAFQVRDKLQRRDAIAAIKKDVLAQLAP--------------------------- 282
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
++T + D+ F E+ + +R ++ R DGR
Sbjct: 283 --------------------RATAENWVAADLAKEFGELEYQTMRGSVLSTKVRIDGRAL 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D +RPIS + G+LPR HGSALFTRGETQ++ V TLG + Q ID + S + + F Y
Sbjct: 323 DTVRPISVKAGVLPRTHGSALFTRGETQAIVVTTLGTARDGQVIDAV-SGEYKENFLFHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FPP SVGE GR GAP RREIGHG LA+R + V+P+ +FPYTIRV S ITESNGSSSM
Sbjct: 382 NFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTMEEFPYTIRVVSEITESNGSSSM 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
ASVCG LAL DAGVP+K +AG+AMG+V + ++F ++LSDI G ED GDMDFK
Sbjct: 442 ASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG +G++A QMDIK+ GIT +MK+AL QAK GR HIL EM P LS +AP
Sbjct: 496 VAGTAEGVSALQMDIKIEGITEEIMKQALAQAKAGRLHILGEMASALTSPRAELSDYAPR 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
+ +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +KA I
Sbjct: 556 LLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIVIASVNAIAAQAAKARIE 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
+T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD+V
Sbjct: 615 QITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGDVV 673
Query: 816 DVKLIEVNDKGQLRLSRRAL 835
VK++EV+ +G++RLS +A+
Sbjct: 674 KVKVLEVDKQGRIRLSMKAV 693
>gi|453329188|dbj|GAC88665.1| polynucleotide phosphorylase [Gluconobacter thailandicus NBRC 3255]
Length = 716
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 318/751 (42%), Positives = 442/751 (58%), Gaps = 61/751 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
+I + R +++ETG + RQA GAV VT G+T++ + A DFFP+ VNYQE+
Sbjct: 8 EIEWAGRPLILETGKIARQADGAVMVTYGDTVVLCTAVGAKSVKPGQDFFPMTVNYQEKA 67
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
AAG+ GGFFKREGR + EVL RLIDRPLRP + F +E Q+ + VLS+D + P
Sbjct: 68 YAAGKIPGGFFKREGRPSEAEVLNARLIDRPLRPLFPENFRNEVQVTATVLSHDMENDPA 127
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+++ A+ LS +P + R+G + KF+VNPT E++DS LDL++AG+ + +L
Sbjct: 128 IVSLIGCSAALTLSGIPFFGPVGAARIGRIDGKFVVNPTLSEVKDSTLDLVVAGTSEGVL 187
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGK-PKMLDTIKLPPPELYKHV 331
M+E LSEE +++AV +G + + + + AL E K P L ++ L K V
Sbjct: 188 MVESEASELSEETMLEAVTLGHTSFQPVIEAIIALAEHAAKAPWDLPSLTKEEIALRKRV 247
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
E+I + + + + + K R K + ++++ IL+E G+
Sbjct: 248 EKIGNKLMAEAYKERVKQARYKKVGEAKDRINEILAEEGF-------------------- 287
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
DV + + PML KE+ ++ +R I++ G R D
Sbjct: 288 ---------------DVEL------AKPML----------KELEAQVVRGSILKTGIRID 316
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI + G+LPRAHGS+LFTRGETQ+L V TLG Q Q ID LE + F
Sbjct: 317 GRDLKTVRPILAEVGILPRAHGSSLFTRGETQALVVATLGTGQDEQIIDALEGEYR-SNF 375
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE GR+G+P RREIGHG LA RAL P+LPS FPYT+RV S ITESNG
Sbjct: 376 LLHYNFPPYSVGECGRMGSPGRREIGHGKLAWRALHPLLPSKEQFPYTMRVVSEITESNG 435
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMA+VCG LAL DAGVP+ +AG+AMG++ + F +LSDI G ED GD
Sbjct: 436 SSSMATVCGSSLALMDAGVPLPRPVAGIAMGLIKEDRGFA------VLSDILGDEDHLGD 489
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG + GITA QMDIK+ IT +M+ AL+QA+DGR HIL EM K + +S
Sbjct: 490 MDFKVAGTDQGITALQMDIKITSITPEIMQIALEQARDGRIHILGEMAKALTEGRDDVSG 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I M V EKI +IGSGGK ++ I+E +G + +D DDGT+ I A + +K+
Sbjct: 550 NAPKITTMSVPKEKIRDVIGSGGKVIREIVEYSGAK-VDIGDDGTITIAASNDEQAQKAI 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
A I + P +G IY +K+ A +G FV R+GL HISEL+ +AK DVV+
Sbjct: 609 ARIEGIVAEPEIGRIYDGKVVKT-ADFGAFVNFLGPRDGLVHISELTQGRVAKTSDVVQQ 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPEADAE 842
GD V VK+I +D+G+++LS R + E A+
Sbjct: 668 GDAVKVKVIGFDDRGKVKLSMRVVDQETGAD 698
>gi|325915559|ref|ZP_08177870.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
gi|325538275|gb|EGD09960.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase) [Xanthomonas vesicatoria ATCC 35937]
Length = 704
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 309/742 (41%), Positives = 447/742 (60%), Gaps = 60/742 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G + +ETG + RQA GAV V +T++ + A E DFFPL V+YQE+F A
Sbjct: 10 YGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTVDYQEKFYAG 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGFFKREGR + E L+ RLIDRP+RP + + +E QI++ V+S + D A
Sbjct: 70 GRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMNPDIDGDIAA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++L+ P + IA +VG ++I+NPT E++DSQL+L++AG+ +A+LM+E
Sbjct: 130 LIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAGTANAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKAL-VEMCGKPKMLDTIKLPPPE-LYKHVEE 333
+ LSEE+++ AV G ++++ N + L VE KP D + + + ++E
Sbjct: 190 SEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPS--DWVAPAKNDGMIAALKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
G++L Q+++K+ RR A+S++++ VL L+ V
Sbjct: 248 AVGDQLASAFQVRDKLQRRDAISAIKKDVLGSLAPRATV--------------------- 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
E V G D+ F E+ + +R ++ R DGR
Sbjct: 287 --EGWVAG------------------------DLSKEFGELEYQTMRGSVLSTKVRIDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D +RPIS++ G+LPR HGSALFTRGETQ++ + TLG + Q ID + S + + F
Sbjct: 321 ALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTARDGQVIDAV-SGEYKENFLF 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP SVGE GR GAP RREIGHG LA+R + V+PS +FPYTIRV S ITESNGSS
Sbjct: 380 HYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLEEFPYTIRVVSEITESNGSS 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG+V + ++F ++LSDI G ED GDMD
Sbjct: 440 SMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDF------VVLSDILGDEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG +G++A QMDIK+ GIT +MK+ALQQAK GR HIL EM P LS +
Sbjct: 494 FKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAHALTTPRQELSDYT 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P + +K+ P+KI +IG GG +++I +ETG + ID +DDGT+ I + + + + +K+
Sbjct: 554 PRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQ-IDIQDDGTIIIASVNAIAAQAAKSR 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T G IY ++ I +G FV I PG++GL H+S++SS + K D +K GD
Sbjct: 613 IEQITSDVEPGRIYEG-KVAKIMDFGAFVTILPGKDGLVHVSQISSERVEKVGDKLKEGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRAL 835
LV VK++EV+ +G++RLS +A+
Sbjct: 672 LVRVKVLEVDKQGRIRLSIKAV 693
>gi|157964552|ref|YP_001499376.1| polynucleotide phosphorylase/polyadenylase [Rickettsia massiliae
MTU5]
gi|187611281|sp|A8F1P3.1|PNP_RICM5 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|157844328|gb|ABV84829.1| Polyribonucleotide nucleotidyltransferase [Rickettsia massiliae
MTU5]
Length = 745
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 308/742 (41%), Positives = 431/742 (58%), Gaps = 57/742 (7%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
++ + + + + + TG + RQA GAVTV G +++ +V +A+ E FFPL +NY+
Sbjct: 5 ITKSVTWNGKVLELSTGKIARQADGAVTVKMGNSVLLCTVVVANKAKEGIGFFPLTINYR 64
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
E AAG+ GGFFKREG+ D EVLV RLIDRP+RP F +ET + VLSYD
Sbjct: 65 EMAYAAGKIPGGFFKREGKASDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSYDPEI 124
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
D LA+ A A++LS P +++A +VGL+ +F++NPT + ++ SQLDL++AG+ D
Sbjct: 125 PVDILAIIGASAALSLSPAPYLEMVAASKVGLINGEFVLNPTLELLKTSQLDLVVAGTSD 184
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
+++M+E LSEE +++AV+ G ++ + + +K L E KPK L+ L P L K
Sbjct: 185 SVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPK-LEMQDLYPASLKK 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLE 389
+E++ +E+ + IK+K R L + EKVLT +VS
Sbjct: 244 EIEKLFVKEIEQAFAIKSKQERSTNLDLIPEKVLT-----HFVS---------------- 282
Query: 390 DEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRR 449
D+ K +S ++ K + S LR I+E RR
Sbjct: 283 -----------------DIENKK---------YSNYQIESALKAIESDILRNEILEKNRR 316
Query: 450 SDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVK 509
DGR IR I+ GLLP AHGSALFTRGETQSL T G Q +D+LE + + +
Sbjct: 317 IDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVDSLEGEYK-E 375
Query: 510 RFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITES 569
RF L Y FPP SV E + PSRRE+GHG LA RA+ P+LP+ FPY+IRV + TES
Sbjct: 376 RFMLNYIFPPYSVNEAMPMKVPSRREVGHGKLAWRAINPILPNKVQFPYSIRVVAETTES 435
Query: 570 NGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDAS 629
NGSSSMA+VCG LAL AGVPIK +AG+AMG+V + +F +LSDI G ED
Sbjct: 436 NGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKKFA------VLSDILGDEDYF 489
Query: 630 GDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSL 689
GDMDFKVAG +GITA QMDIK+ G+ +MK AL+QA+ GR HIL +M K P+N L
Sbjct: 490 GDMDFKVAGTSEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMNKVISKPNNEL 549
Query: 690 SKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEK 749
SK+AP +K+ +KI IIG GGK +K I E +G + ID DDGTV I A D L+
Sbjct: 550 SKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICEISGAK-IDISDDGTVSIYASDRDKLKV 608
Query: 750 SKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVV 809
+ I + + P +G+I+ N + + G F+ ++G HISE+S + V+
Sbjct: 609 ALDKIKAIAVEPEIGEIF-NGTVMKVLDSGAFINYLGNKDGFVHISEISEERIETVSSVL 667
Query: 810 KVGDLVDVKLIEVNDKGQLRLS 831
K GD+V VKLI ++KG+ +L+
Sbjct: 668 KQGDIVKVKLIGFDNKGKAKLT 689
>gi|301063439|ref|ZP_07203971.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
NaphS2]
gi|300442378|gb|EFK06611.1| polyribonucleotide nucleotidyltransferase [delta proteobacterium
NaphS2]
Length = 697
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 311/747 (41%), Positives = 440/747 (58%), Gaps = 62/747 (8%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I R I VETG + +QA+G+V VT GET++ + D E DF PL V YQE
Sbjct: 6 IEISGRNIHVETGRIAKQANGSVVVTSGETVVLVTAVATDDVREGIDFLPLTVEYQEMSY 65
Query: 154 AAGRTSGGFFKRE-GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
A G+ G FF+R+ GR + E L+ RLIDRPLRP +++ETQ+++ VLS D + D
Sbjct: 66 AGGQIPGNFFRRDMGRPGEKETLISRLIDRPLRPLFPDNYHYETQVIATVLSTDKENEAD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
LA+ A A+ +S++P IAGV+VG + +F+ NPT + E+S ++L++AG+ D I+
Sbjct: 126 MLAMLGASAALEISDIPFQGPIAGVKVGRIDGEFVANPTISQQEESDINLIVAGNRDGIV 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+EG F+SE +I A+ G A++ + + ++L + GKPK ++ L VE
Sbjct: 186 MVEGGSRFVSESDMIDAIFYGHQAIQPMLDVQESLKKEVGKPKRSIPDEVADASLKTKVE 245
Query: 333 EIAGEELVK-VLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
EI GE L+K VL I +K+ R+ + +V+ L E K E
Sbjct: 246 EI-GEPLLKEVLCISDKMDRQAKRRDAQNQVVDALLEEFEGQKSE--------------- 289
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
+K F + K +R I++ G+R D
Sbjct: 290 -----------------------------------IKDFFHSLEKKMVRSMILDEGKRID 314
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR + +RPI GLLPR HGSALFTRGETQ++ + TLG ++ QRI+++ +E++ F
Sbjct: 315 GRAFNEVRPIECLVGLLPRIHGSALFTRGETQAMVLTTLGTERDRQRIESI-FGEELRSF 373
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+FPP SVGE R+ P RREIGHG LA RAL PVLPS+ DF Y IRV S I ESNG
Sbjct: 374 ILHYNFPPYSVGEAKRLSGPGRREIGHGALARRALLPVLPSEEDFQYCIRVVSEILESNG 433
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCL+L DAGVPIK +AGVAMG+V + D ++L+DI G ED GD
Sbjct: 434 SSSMASVCGGCLSLMDAGVPIKDLVAGVAMGLVAEGDNV------VVLTDILGDEDHYGD 487
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKV G +GITA QMDIK+ +T +M++AL+QAK+GR HIL M + P N +S+
Sbjct: 488 MDFKVTGTSEGITALQMDIKIERLTREIMEQALEQAKEGRLHILGCMKETIAQPRNEVSE 547
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP+I +K+ PEK+ ++IG GGK ++ I +G ID +D+G V I++ D + +
Sbjct: 548 YAPIITNVKISPEKVRILIGPGGKTIREICNVSGAR-IDVDDEGVVTISSPDKECSDAAM 606
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
++ + G +Y+ +K I +G FVEI PG +GL HIS+L+ + K DV+
Sbjct: 607 KMVKEIVQEAEEGKLYQGKVVK-IMDFGAFVEIFPGTDGLVHISQLAPERVNKVTDVLNE 665
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALLPE 838
GD V VK++EV G++RLSR+A L E
Sbjct: 666 GDEVLVKVLEVGKDGRIRLSRKAALGE 692
>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase [Thiobacillus denitrificans ATCC
25259]
gi|123759157|sp|Q3SKX5.1|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
denitrificans ATCC 25259]
Length = 706
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 304/745 (40%), Positives = 432/745 (57%), Gaps = 66/745 (8%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+G Q+ +ETG + RQASGAV V +T++ +V + DFFPL V+YQE+ AA
Sbjct: 10 YGRHQVTLETGEIARQASGAVVVNMDDTMVLVTVVAKNEVKPGQDFFPLTVDYQEKTYAA 69
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
GR GGF KRE R + E L+ RLIDRP+RP +GF++E QI++ V+S + D A
Sbjct: 70 GRIPGGFLKRESRPSEGETLISRLIDRPIRPLFPEGFFNEVQIIATVMSSNPEVSADIPA 129
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ A A++LS +P + RVG + ++++NPT E++DS LDL++AG++ A+LM+E
Sbjct: 130 LIGASAALSLSGLPFDGPVGAARVGFINGEYVLNPTNAELKDSALDLVVAGTESAVLMVE 189
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPP----ELYKHV 331
L E++++ AV G ++ N + L + G D PP + +
Sbjct: 190 SEAMELPEDIMLGAVVFGHTQMQAAINAINELADEAGA----DAWDWAPPAEDTAMVDRL 245
Query: 332 EEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDE 391
+ +A + L + IK K R A+ + K
Sbjct: 246 KALAEDGLQQAYNIKQKRARMAAVDEVRSKAFA--------------------------- 278
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
E + D + + H+K F + + +R RI+ G R D
Sbjct: 279 ---ELITADMDTVAAN-HVKD-----------------AFHRLEAGVVRNRILSGQPRID 317
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
GR +RPI+ R G+LPRAHGSALFTRGETQ+L V TLG + Q ID LE RF
Sbjct: 318 GRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVTTLGTGRDEQTIDALEGSYS-DRF 376
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
L Y+ PP + GE GR+G+P RREIGHG LA+RAL VLPS +F YT+RV S ITESNG
Sbjct: 377 MLHYNMPPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGYTMRVVSEITESNG 436
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
SSSMASVCGGCL+L DAG P+K +AG+AMG++ + + F +L+DI G ED GD
Sbjct: 437 SSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFA------VLTDILGDEDHLGD 490
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E+G+TA QMDIK+ GIT +M+ AL QAK+GR HIL ++K S ++ +S
Sbjct: 491 MDFKVAGTENGVTALQMDIKITGITKEIMQAALTQAKEGRMHILG-IMKASVSETHEMSA 549
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP I MK+ PEKI +IG GG ++++ EETG + ID ++DG+VKI + + E +K
Sbjct: 550 YAPRIIAMKINPEKIRDVIGKGGAVIRALTEETGTQ-IDIQEDGSVKIACTSMEAGELAK 608
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
I +T VG +Y IK + +G V + PGR+GL HIS+++ + D +K
Sbjct: 609 KRIEEITAEVEVGKVYEGPVIK-LLDFGAIVNVLPGRDGLLHISQIAHERVNTIGDYLKE 667
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
G +V VK++E ++KG+LRLS +ALL
Sbjct: 668 GQVVRVKILEADEKGRLRLSMKALL 692
>gi|402310535|ref|ZP_10829499.1| polyribonucleotide nucleotidyltransferase [Eubacterium sp. AS15]
gi|400368458|gb|EJP21469.1| polyribonucleotide nucleotidyltransferase [Eubacterium sp. AS15]
Length = 690
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 310/745 (41%), Positives = 449/745 (60%), Gaps = 61/745 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + VETG + + A+GA T+ G+T++ + + P E DFFPL+V+++E+
Sbjct: 6 EMQLGGRTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ G F +REG+ + +L RLIDRP+RP KG+ ++ Q+++ VLS D H PD
Sbjct: 66 YSAGKIPGSFIRREGKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ + IA+++S +P + V VGLV +FI+NPT ++ E S + L+++G+ DAI+
Sbjct: 126 TIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSDMYLVVSGTKDAIM 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SEE+++ A+ + +++I + V+ + GK K + P E+ V
Sbjct: 186 MVEAGSNEVSEEVMLNAILFAHEEIKKICDFVQGIANEIGKEKDEYYVFKPLEEVEVAVT 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI-PDLLEDE 391
E A +++ ++ +K R+ + EKV KDET+ E I PD ++D
Sbjct: 246 EFASQKMKDAIKTIDKQERQDNM----EKV-----------KDETMEHFEEIFPDNMKDV 290
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
DE V +T K +R IV+ R D
Sbjct: 291 DE------------------------------------VIYSITKKEVRNMIVKDKVRPD 314
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
R + IRPI G+LPR HGSA+FTRG+TQ L+V TL AQ ID L+ ++E +R+
Sbjct: 315 NRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSEAQTIDGLDEEEE-RRY 373
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVGE P RREIGHG LA+RA+EP+LPS+ +FPYTIRV S + SNG
Sbjct: 374 MHHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEFPYTIRVVSEVMSSNG 433
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S ASVCG L L DAGVP+K +AG+AMG++ D ++ +ILSDI G ED GD
Sbjct: 434 STSQASVCGSTLCLLDAGVPMKDMVAGIAMGLIKDEEDV------VILSDIQGMEDFLGD 487
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E GITA QMDIK+ GI ++K+AL QA++GR HIL EM K P SLS
Sbjct: 488 MDFKVAGTEKGITAIQMDIKISGIDEDILKRALAQAREGRLHILGEMRKVIDKPRESLSP 547
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP+I M + P+KI +IG+GGK + II+ETGV+ ID ++DG V I + D K+K
Sbjct: 548 YAPMIINMMINPDKIREVIGTGGKVINKIIDETGVK-IDIDNDGKVSILSNDQEMCLKAK 606
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
AII ++ P VG IY + +I I +G FVEI PG+EGL HIS++ +AK ED+ K
Sbjct: 607 AIIESIVAEPEVGKIY-SGKITKIMQFGAFVEILPGKEGLLHISQMDKQRVAKVEDLFKE 665
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD V+VKL E++ +G+L LSR+ LL
Sbjct: 666 GDSVEVKLTEIDSQGRLNLSRKVLL 690
>gi|386829392|ref|ZP_10116499.1| polyribonucleotide nucleotidyltransferase [Beggiatoa alba B18LD]
gi|386430276|gb|EIJ44104.1| polyribonucleotide nucleotidyltransferase [Beggiatoa alba B18LD]
Length = 693
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 309/753 (41%), Positives = 445/753 (59%), Gaps = 69/753 (9%)
Query: 89 PVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNY 148
P+ +G + +ETG + RQAS AV + G+T++ +V + PS+ DFFPL V+Y
Sbjct: 3 PLKKTFQYGQHSVTLETGEIARQASAAVMSSMGDTVVLVTVVGSKEPSKEGDFFPLTVDY 62
Query: 149 QERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGL 208
QER AAG+ FFKREGR + E L RLIDRPLRP +GF +E QI++ V+S D
Sbjct: 63 QERTYAAGKIPASFFKREGRPSEKETLTSRLIDRPLRPLFPEGFTNEVQIVATVMSLDPE 122
Query: 209 HFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSD 268
PD A+ A A+AL+ P + RVG + ++++NPT ++++ S LDL++AG+
Sbjct: 123 IDPDIPALIGASAALALAGFPMLATLGAARVGYINGEYVLNPTGKQLQHSALDLVVAGTR 182
Query: 269 DAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVE------MCGKPKMLDTIKL 322
A+LM+E LSEE+++ AV G + ++ + + ++++V KP LD
Sbjct: 183 TAVLMVESEATELSEEIMLGAVLFGHEQLQVVLDAIQSMVTEANPSPWVWKPVTLD---- 238
Query: 323 PPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVE 382
P L + V+ A L + QI++K+ RR + + ++V++ L + VE
Sbjct: 239 --PALVEQVKNSAENRLREAYQIRDKLVRRDTIEIIRKEVISQLCD------------VE 284
Query: 383 TIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRR 442
P+ +SE VK ++ K +R
Sbjct: 285 A----------------------------PQ--------WSESQVKSALSKLEEKIVRGN 308
Query: 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNL 502
I+ G R DGR IRPI+ R G+LPR HGSALFTRGETQ++ V TLG ++ AQ +D L
Sbjct: 309 ILGGLPRIDGRDNRTIRPITIRTGVLPRTHGSALFTRGETQAIVVTTLGTERDAQVVDAL 368
Query: 503 ESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRV 562
E + + + F L Y+FPP VGE+GRIG P RREIGHG LA R ++ V+P+ FPY++R+
Sbjct: 369 EGERK-EGFMLHYNFPPYCVGEIGRIGTPKRREIGHGRLARRGVQAVMPNQQTFPYSVRL 427
Query: 563 ESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDI 622
S ITESNGSSSMA+VCG LAL DA VPIK +AG+AMG++ + D F ++LSDI
Sbjct: 428 VSEITESNGSSSMATVCGASLALMDAAVPIKAPVAGIAMGLIKEGDNF------VVLSDI 481
Query: 623 TGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCS 682
G ED GDMDFKVAG +G+TA QMDIK+ GIT +M+ AL QAK GR HIL M +
Sbjct: 482 MGDEDHLGDMDFKVAGTTNGVTALQMDIKIDGITREIMEIALAQAKTGRMHILGIMGQAI 541
Query: 683 PPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAK 742
P +S HAP I ++K +KI +IG GG ++SI EETG ID DDG VKI +
Sbjct: 542 STPREEMSVHAPRITSFRIKTDKIRDVIGKGGATIRSITEETGA-VIDISDDGLVKIASS 600
Query: 743 DLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWL 802
D ++ E++K I +T VG IY + +I + +G FV I+PG++GL HIS++S +
Sbjct: 601 DQAASEEAKRRILQITTDVEVGGIY-DGKIAKLVDFGAFVTISPGKDGLVHISQISEERV 659
Query: 803 AKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRAL 835
K D ++ GD V VK++E++ +G++RLS + +
Sbjct: 660 DKVTDKLREGDTVKVKVLEIDKQGKIRLSMKGI 692
>gi|306820072|ref|ZP_07453720.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551850|gb|EFM39793.1| polyribonucleotide nucleotidyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 690
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 309/745 (41%), Positives = 449/745 (60%), Gaps = 61/745 (8%)
Query: 93 KIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERF 152
++ G R + VETG + + A+GA T+ G+T++ + + P E DFFPL+V+++E+
Sbjct: 6 EMQLGGRTLTVETGKLAQMANGACTLRYGDTVLLVTATNSAKPKEGIDFFPLSVDFEEKL 65
Query: 153 SAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPD 212
+AG+ G F +REG+ + +L RLIDRP+RP KG+ ++ Q+++ VLS D H PD
Sbjct: 66 YSAGKIPGSFIRREGKPSEKAILTSRLIDRPIRPLFPKGYRNDVQVVATVLSVDIDHNPD 125
Query: 213 ALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAIL 272
+A+ + IA+++S +P + V VGLV +FI+NPT ++ E S + L+++G+ DAI+
Sbjct: 126 TIAMIGSSIALSISSIPFNGPTGSVSVGLVDGQFIINPTFEQREKSDMYLVVSGTKDAIM 185
Query: 273 MIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVE 332
M+E + +SEE+++ A+ + +++I + V+++ GK K + P E+ V
Sbjct: 186 MVEAGSNEVSEEVMLNAILFAHEEIKKICDFVQSIANEIGKEKDEYYVFKPLEEVEVAVT 245
Query: 333 EIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI-PDLLEDE 391
E A +++ ++ +K R+ + EKV KDET+ E I PD ++D
Sbjct: 246 EFASQKMKDAIKTVDKQERQDNM----EKV-----------KDETMEHFEEIFPDNMKDV 290
Query: 392 DEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSD 451
DE V +T + +R IV+ R D
Sbjct: 291 DE------------------------------------VIYSITKREVRNMIVKDKVRPD 314
Query: 452 GRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRF 511
R + IRPI G+LPR HGSA+FTRG+TQ L+V TL AQ ID L+ ++E +R+
Sbjct: 315 NRAQEEIRPIWCEAGVLPRTHGSAIFTRGQTQVLSVATLAGLSEAQTIDGLDEEEE-RRY 373
Query: 512 YLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG 571
Y+FP SVGE P RREIGHG LA+RA+EP+LPS+ +FPYTIRV S + SNG
Sbjct: 374 MHHYNFPAFSVGEARASRGPGRREIGHGALAQRAIEPLLPSEEEFPYTIRVVSEVMSSNG 433
Query: 572 SSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGD 631
S+S ASVCG L L DAGVP+K +AG+AMG++ D ++ +ILSDI G ED GD
Sbjct: 434 STSQASVCGSTLCLLDAGVPMKDMVAGIAMGLIKDEEDV------VILSDIQGMEDFLGD 487
Query: 632 MDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSK 691
MDFKVAG E GITA QMDIK+ GI ++K+AL QA++GR HIL EM K P SLS
Sbjct: 488 MDFKVAGTEKGITAIQMDIKISGIDEDILKRALAQAREGRLHILGEMRKVIDKPRESLSP 547
Query: 692 HAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSK 751
+AP+I M + P+KI +IG+GGK + II+ETGV+ ID ++DG V I + D K+K
Sbjct: 548 YAPMIINMMINPDKIREVIGTGGKVINKIIDETGVK-IDIDNDGKVSILSNDQEMCMKAK 606
Query: 752 AIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKV 811
AII + P VG IY + +I I +G FVEI PG+EGL HIS++ +AK ED+ K
Sbjct: 607 AIIEGIVAEPEVGKIY-SGKITKIMQFGAFVEILPGKEGLLHISQMDKQRVAKVEDLFKE 665
Query: 812 GDLVDVKLIEVNDKGQLRLSRRALL 836
GD V+VKL E++ +G+L LSR+ LL
Sbjct: 666 GDSVEVKLTEIDSQGRLNLSRKVLL 690
>gi|376267701|ref|YP_005120413.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
gi|364513501|gb|AEW56900.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus F837/76]
Length = 712
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 446/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEET V+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETDVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ G++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|218904934|ref|YP_002452768.1| polynucleotide phosphorylase/polyadenylase [Bacillus cereus AH820]
gi|226702597|sp|B7JJ84.1|PNP_BACC0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|218539646|gb|ACK92044.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus AH820]
Length = 712
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 304/743 (40%), Positives = 446/743 (60%), Gaps = 58/743 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
I RQ+ VETG + +QA+GAV V G+T + S A ++ DFFPL VNY+ER
Sbjct: 10 IDLAGRQLTVETGQLAKQANGAVLVRYGDTAVL-STATASKEAKNVDFFPLTVNYEERLY 68
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
A G+ GGF KREGR + +L RLIDRP+RP GF +E Q++S V+S D +
Sbjct: 69 AVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQDCSSEM 128
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ + +A+++S++P IAG VG + +F++NPT ++ E S + L++AG+ DAI M
Sbjct: 129 AAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTKDAINM 188
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E D + EE +++A+ G D ++ + + +V+ GK K + +L + V E
Sbjct: 189 VEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLNQAVRE 248
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
+A +++ +Q+ K R A++ ++++V+ + E ++
Sbjct: 249 MAEKDMHSAIQVHEKHAREDAINEVKKRVI----------------------EHYEAQEA 286
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
D + + G+V+E +L+ K+V +EV RR I R DGR
Sbjct: 287 DADTL--GQVNE--------------ILY-----KIVKEEV-----RRLITVEKIRPDGR 320
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
D IRP++S G+L R HGS LFTRG+TQ+L++ TLG Q +D L +E KRF
Sbjct: 321 KGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL-GVEESKRFMH 379
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FP SVGE + P RREIGHG L ERALEPV+PS+ DFPYT+R+ S + ESNGS+
Sbjct: 380 HYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRLVSEVLESNGST 439
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
S AS+CG LA+ DAGVP+K +AG+AMG+V + + ILSDI G ED GDMD
Sbjct: 440 SQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHY------TILSDIQGMEDHLGDMD 493
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS +A
Sbjct: 494 FKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEPRTELSAYA 553
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I++ + +K+K I
Sbjct: 554 PKIITMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFISSINQEMNDKAKKI 612
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I ++ VG+IY ++K + +G FVE+ ++GL HISEL+ + K EDVVK+GD
Sbjct: 613 IEDIVREVQVGEIYEG-KVKRVEKFGAFVELFSDKDGLVHISELALERVGKVEDVVKIGD 671
Query: 814 LVDVKLIEVNDKGQLRLSRRALL 836
++ VK+IE++ +G++ LSR+ LL
Sbjct: 672 VITVKVIEIDKQGRVNLSRKVLL 694
>gi|410455997|ref|ZP_11309867.1| polynucleotide phosphorylase/polyadenylase [Bacillus bataviensis
LMG 21833]
gi|409928550|gb|EKN65654.1| polynucleotide phosphorylase/polyadenylase [Bacillus bataviensis
LMG 21833]
Length = 705
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 303/743 (40%), Positives = 437/743 (58%), Gaps = 58/743 (7%)
Query: 96 FGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAA 155
+ R++ VE G + +QASGA V G+T + ++ + P DFFPL VNY+ER A
Sbjct: 12 WAGRKLSVEIGQLAKQASGAALVRYGDTAVLSTATASKEPKNL-DFFPLTVNYEERLYAV 70
Query: 156 GRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALA 215
G+ GGF KREGR + +L RLIDRP+RP GF ++ Q++S V+S D + A
Sbjct: 71 GKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNDVQVISIVMSVDQDCSTEMAA 130
Query: 216 VTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIE 275
+ + +A++ S++P IAGV VG + ++F++NPT ++ E S + L +AG+ DAI M+E
Sbjct: 131 MFGSSLALSTSDIPFEGPIAGVVVGRINNEFVINPTVEQAEKSDIHLTVAGTKDAINMVE 190
Query: 276 GYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIA 335
+ EE++++A+ G + ++ + + +V GK K ++ EL V E+
Sbjct: 191 AGALEVPEEIMLEAIMFGHNEIKRLIEFQEKIVAEIGKEKREISLYEINKELEAEVRELC 250
Query: 336 GEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDE 395
E++K +Q++ K R A+ ++ +V+ YV ++ T DED +
Sbjct: 251 EAEMLKAIQVQEKHAREDAIKEVKNQVVA-----KYVEQEAT------------DEDMKQ 293
Query: 396 EVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFA 455
VK + ++ +RR I R DGR
Sbjct: 294 -------------------------------VKQILDKIVKGEVRRLITVEKVRPDGRKI 322
Query: 456 DGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQY 515
D IRP+SS+ +LPR HGS LFTRG+TQ+L++ TLG Q +D L ++E KRF Y
Sbjct: 323 DEIRPLSSQVSILPRTHGSGLFTRGQTQALSICTLGAMGDVQILDGLGIEEE-KRFMHHY 381
Query: 516 SFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSM 575
+FP SVGE G I P RREIGHG L ERALEPV+PS+ DFPYTIR+ S + ESNGS+S
Sbjct: 382 NFPSFSVGETGPIRGPGRREIGHGALGERALEPVIPSEKDFPYTIRLVSEVLESNGSTSQ 441
Query: 576 ASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFK 635
AS+C LA+ DAGVPIK +AG+AMG+V + + +LSDI G ED GDMDFK
Sbjct: 442 ASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHY------TVLSDIQGMEDHLGDMDFK 495
Query: 636 VAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPL 695
VAG G+TA QMDIK+ G++ ++++ALQQAK GR HIL ML P LS+ AP
Sbjct: 496 VAGTAKGVTALQMDIKIEGLSREILEEALQQAKVGRMHILDSMLATITEPREELSQFAPK 555
Query: 696 IHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIIS 755
I M + P+KI +IG GK++ IIEETGV+ ID E DGTV I + + K+K II
Sbjct: 556 ILTMTINPDKIRDVIGPSGKQINKIIEETGVK-IDIEQDGTVFIASTNQEMNNKAKKIIE 614
Query: 756 NLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLV 815
++ VG++Y ++K I +G FVEI G++GL HISEL+ + K EDVVK+GD +
Sbjct: 615 DIVREVQVGEMYLG-KVKRIEKFGAFVEIFAGKDGLVHISELAEERVGKVEDVVKIGDEM 673
Query: 816 DVKLIEVNDKGQLRLSRRALLPE 838
VK+ E++ +G++ LSR+A+L E
Sbjct: 674 LVKVTEIDKQGRVNLSRKAVLKE 696
>gi|127513750|ref|YP_001094947.1| polynucleotide phosphorylase/polyadenylase [Shewanella loihica
PV-4]
gi|187611300|sp|A3QGU0.1|PNP_SHELP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|126639045|gb|ABO24688.1| Polyribonucleotide nucleotidyltransferase [Shewanella loihica PV-4]
Length = 700
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 307/757 (40%), Positives = 440/757 (58%), Gaps = 64/757 (8%)
Query: 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVN 147
P+ +G + +ETG + RQA AV + G+T + +V DFFPL VN
Sbjct: 2 NPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTVN 61
Query: 148 YQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDG 207
YQE+ AAG+ GGFFKREGR + E L RLIDRP+RP GF +E Q++ V+S D
Sbjct: 62 YQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVDP 121
Query: 208 LHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS 267
P+ +++ A+++S +P + + RVG V ++I+NPT ++E+SQL+L +AG+
Sbjct: 122 EISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAGT 181
Query: 268 DDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPEL 327
++A+LM+E D L EE+++ AV G + + + +K L KP T + EL
Sbjct: 182 ENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEEL 241
Query: 328 YKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPD- 386
V+++A L + QI ++ ++ Y D +V+T
Sbjct: 242 VAKVKDLAEAGLTEAYQI-------------------VVKQDRYAQVD----VVKTAAKE 278
Query: 387 --LLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L E+ D D +R+ +L S + K +R RI+
Sbjct: 279 ALLAENPDAD-------------------AREIDGLLGS----------LEKKVVRSRII 309
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR D +R +S G+LPR HGSALFTRGETQ+L TLG ++ AQ+ID++
Sbjct: 310 AGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMG 369
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + RF L Y+FPP SVGE G +G+P RREIGHG LA R + V+P+ +FPY+IRV S
Sbjct: 370 E-QTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEFPYSIRVVS 428
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK S+AG+AMG+V + D+F ++LSDI G
Sbjct: 429 EITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDF------VVLSDILG 482
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG DG+TA QMDIK+ GIT +M+ ALQQA R HIL M +
Sbjct: 483 DEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAISG 542
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+S HAP I +K+ PEKI +IG GG ++++ EETG I+ EDDGTVKI + +
Sbjct: 543 HRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGT-TIELEDDGTVKIASANG 601
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
+ +++ I +T VG +Y N ++ I +G FV I PG++GL HIS+++ +A
Sbjct: 602 DATKEAIRRIQEITAEVEVGTVY-NGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN 660
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADA 841
D ++VG V VK++EV+ +G++RLS + P+ +A
Sbjct: 661 VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEA 697
>gi|387129542|ref|YP_006292432.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM7]
gi|386270831|gb|AFJ01745.1| Polyribonucleotide nucleotidyltransferase [Methylophaga sp. JAM7]
Length = 699
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/750 (40%), Positives = 438/750 (58%), Gaps = 58/750 (7%)
Query: 94 IPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFS 153
+ FG+ + +ETG + RQA GAV + GET + +V + DFFPL VNYQER
Sbjct: 8 VQFGEHLLSLETGKIARQAGGAVMASLGETAVLVTVVGKKNVNPGQDFFPLTVNYQERTY 67
Query: 154 AAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDA 213
AAG+ GGFFKREGR + E L RLIDRPLRP KGF +E Q+++ V++ D PD
Sbjct: 68 AAGKIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPKGFINEVQVIATVVAIDPAIDPDI 127
Query: 214 LAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILM 273
A+ A A+A+S +P + + RVG + ++++NP+ ++ +S+LDL++AG++ A+LM
Sbjct: 128 PAMIGASAALAISGIPFNGPLGAARVGYINGQYVLNPSKSQLTESELDLVVAGTETAVLM 187
Query: 274 IEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEE 333
+E L EE+++ +V G ++ N V+ L + K + LY V+E
Sbjct: 188 VESEAQELPEEVMLGSVMFGHQQMQSAINLVRDLQQEVSKAAWEWQAEAKDDRLYNAVKE 247
Query: 334 IAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDE 393
A + + + +K+ R+ L+ + + T D L ED
Sbjct: 248 AAYAGIGQAYTVSDKLLRQDQLAEVRQ----------------------TAVDALVSED- 284
Query: 394 DEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGR 453
GE ++E +VK +F ++ + +R RI+ G R DGR
Sbjct: 285 -------GE-------------------WNEEEVKAIFGKLEKELVRGRIIAGEPRIDGR 318
Query: 454 FADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYL 513
+RP+ +LPR HGSALFTRGETQ++ V TLG ++ AQ ID +E + RF L
Sbjct: 319 DTKTVRPVFVETSVLPRVHGSALFTRGETQAIVVATLGAERDAQMIDAVEGEYR-DRFML 377
Query: 514 QYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSS 573
Y+FPP VGE G +G+P RREIGHG LA+R ++ V+P+ FPY +RV S ITESNGSS
Sbjct: 378 HYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPTAEAFPYVVRVVSEITESNGSS 437
Query: 574 SMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMD 633
SMASVCG LAL DAGVPIK +AG+AMG++ + D + +++DI G ED GDMD
Sbjct: 438 SMASVCGTSLALMDAGVPIKAPVAGIAMGLIKEPDAYA------VITDILGDEDHLGDMD 491
Query: 634 FKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHA 693
FKVAG E G+TA QMDIK+ GI +M+ AL QA+DGR HIL +M +S+HA
Sbjct: 492 FKVAGTEKGVTALQMDIKIEGINEEIMRTALAQARDGRLHILDKMNAVISTHRQEMSEHA 551
Query: 694 PLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAI 753
P I KV +KI +IG GG +++I EETG ID +DDGTV I + D ++ + +
Sbjct: 552 PRIITTKVHADKIRDVIGKGGATIRAITEETGA-TIDIQDDGTVMIFSSDYNAGQDALHR 610
Query: 754 ISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGD 813
I +T VG IY+ + + +G FV I PG++GL HIS++S+ + D + GD
Sbjct: 611 IEQITADVEVGKIYQG-RVAKLMDFGAFVTILPGKDGLVHISQISNERVENVSDKLSEGD 669
Query: 814 LVDVKLIEVNDKGQLRLSRRALLPEADAEN 843
+++VK++EV+ +G++RLS +A+ +A AE+
Sbjct: 670 MIEVKVLEVDRQGRIRLSMKAVHDDASAES 699
>gi|350552169|ref|ZP_08921375.1| Polyribonucleotide nucleotidyltransferase [Thiorhodospira sibirica
ATCC 700588]
gi|349795034|gb|EGZ48840.1| Polyribonucleotide nucleotidyltransferase [Thiorhodospira sibirica
ATCC 700588]
Length = 697
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 300/753 (39%), Positives = 435/753 (57%), Gaps = 63/753 (8%)
Query: 90 VSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQ 149
+S +G + +ETG + RQASGAV V +T++ + DFFPL VNYQ
Sbjct: 4 ISHSFQYGHHTVTLETGEIARQASGAVLVNMAQTVVLVTAVARPETVAGRDFFPLTVNYQ 63
Query: 150 ERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLH 209
ER AAGR GGFFKREGR + E L RLIDRPLRP +GF +E Q+++ V+S +
Sbjct: 64 ERTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPLRPLFPEGFTNEVQVIATVVSINPEV 123
Query: 210 FPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDD 269
PD A+ A A+ALS VP I+ RVG +++NP+ E+++S LDL++AG+ +
Sbjct: 124 DPDIPAILGASAALALSGVPFMGPISAARVGYKDGAYLLNPSQTEIKESLLDLVVAGTQN 183
Query: 270 AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYK 329
A++M+E LSE++++ AV G ++ + LV + GKP+ L
Sbjct: 184 AVIMVESEAQELSEDVMLGAVNYGHAQMQVAIEAINHLVSLAGKPRWDWVAPEHDAALMA 243
Query: 330 HVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILS--ENGYVSKDETVGIVETIPDL 387
+E E L + QI K R +++L ++++ ++ E G S D
Sbjct: 244 RIESHCLESLTQAYQIAEKQARTLRINTLRDELVAAIASGEEGAPSADL----------- 292
Query: 388 LEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGG 447
VK++F ++ + +R R+++G
Sbjct: 293 ---------------------------------------VKVLFHDLEKRIVRARVLDGL 313
Query: 448 RRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDE 507
R DGR +RPI++R G+LPR HGSALFTRGETQ+L + TLG + AQ ID +E + +
Sbjct: 314 PRIDGRDTRTVRPITARVGVLPRTHGSALFTRGETQALVIATLGTDRDAQLIDAIEGERK 373
Query: 508 VKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTIT 567
+RF L Y+FPP GE G +G P RREIGHG LA+R ++ V+P + DFPY +RV S IT
Sbjct: 374 -ERFMLHYNFPPYCTGETGMVGTPKRREIGHGRLAKRGIQAVMPPETDFPYVLRVVSEIT 432
Query: 568 ESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSED 627
ESNGSSSMASVCG +AL DAGVP+K +AG+AMG++ + + F ++SDI G ED
Sbjct: 433 ESNGSSSMASVCGTSMALMDAGVPLKAPVAGIAMGLIKEGERFA------VISDILGDED 486
Query: 628 ASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSN 687
GDMDFKVAG +G+TA QMDIK+ GIT +M++AL+QA GR HIL M + P
Sbjct: 487 HLGDMDFKVAGTVNGVTALQMDIKIDGITAEIMQQALEQALAGRLHILERMTQAIDSPRA 546
Query: 688 SLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSL 747
+S +AP +++ PEKI +IG GG ++++ EETG ID +D G +KI + D +
Sbjct: 547 EMSSYAPRFITLRINPEKIRDVIGKGGATIRALTEETGA-TIDIDDTGIIKIASVDKEAG 605
Query: 748 EKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAED 807
E+++ I +T VG +Y +K I +G FV I PGR+GL HIS++S +A D
Sbjct: 606 EEARRRIEEITADVEVGRVYEGRVVK-IMDFGAFVSIMPGRDGLVHISQISDERVANVAD 664
Query: 808 VVKVGDLVDVKLIEVNDKGQLRLSRRALLPEAD 840
+ G + VK++EV+ +G++RLS +A+ EAD
Sbjct: 665 RLSEGQSIKVKVLEVDKQGRIRLSIKAV--EAD 695
>gi|345871294|ref|ZP_08823241.1| Polyribonucleotide nucleotidyltransferase [Thiorhodococcus drewsii
AZ1]
gi|343920704|gb|EGV31433.1| Polyribonucleotide nucleotidyltransferase [Thiorhodococcus drewsii
AZ1]
Length = 698
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 309/753 (41%), Positives = 443/753 (58%), Gaps = 59/753 (7%)
Query: 86 FPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLN 145
P P+ + FG++ + +ETG + RQA GAV V +T++ +V + P DFFPL
Sbjct: 2 IPTPIVKQFQFGNQTVKLETGEIARQADGAVMVNMDDTVVLVTVVVNKNPGVERDFFPLT 61
Query: 146 VNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSY 205
V+YQE+ AAGR GGFF+REGR + E+L RLIDRP+RP GF +E QI++ V S
Sbjct: 62 VDYQEKTYAAGRIPGGFFRREGRPSESEILTARLIDRPIRPLFADGFTNEVQIIATVKSL 121
Query: 206 DGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEME-DSQLDLLL 264
+ P+ A+ A A+A++ VP + I RVG ++++NP + DS LDL++
Sbjct: 122 NPAVNPEVPALIGASAALAIAGVPFNGPIGAARVGYKDGEYLLNPPVIGLNPDSDLDLVV 181
Query: 265 AGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPP 324
AG+D A+LM+E LSEE+++ AV G + ++ + ++ L GKP++ T +
Sbjct: 182 AGTDKAVLMVESEARGLSEEVMLGAVLFGHEQMQVVIEAIRELAAEAGKPQIEWTPSVVS 241
Query: 325 PELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETI 384
PEL V GE++ +IK K R AL++ +K++
Sbjct: 242 PELADAVANACGEQIAAAYRIKEKQERYNALTAAR-----------TAAKEQ-------- 282
Query: 385 PDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIV 444
L +E E+ V G ++ + SK +R I+
Sbjct: 283 --LCSEESSWSEMAVKGAIE----------------------------ALESKIVRGSIL 312
Query: 445 EGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLES 504
G R DGR +RPI+ R G+LPR HGS+LFTRGETQ++ + TLG ++ +Q ID L+
Sbjct: 313 AGNPRIDGRDNKTVRPITIRAGVLPRTHGSSLFTRGETQAMVITTLGTERDSQIIDALDG 372
Query: 505 DDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVES 564
+ + F L Y+FPP VGE+GR+G+P RREIGHG LA+R + V+PS +FPY++RV S
Sbjct: 373 ERR-EHFMLHYNFPPFCVGELGRVGSPKRREIGHGRLAKRGVLAVMPSIEEFPYSVRVVS 431
Query: 565 TITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITG 624
ITESNGSSSMASVCG LAL DAGVPIK +AGVAMG++ + +EF +L+DI G
Sbjct: 432 EITESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEAEEFA------VLTDIMG 485
Query: 625 SEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPP 684
ED GDMDFKVAG +GI A QMDIK+ GIT +M+ AL QAK+GR HIL EM K
Sbjct: 486 DEDHLGDMDFKVAGTSEGINALQMDIKIEGITKEIMEIALAQAKEGRLHILGEMSKVMSS 545
Query: 685 PSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDL 744
+ +S+HAP I K+ PEKI +IG GG +++I EETG ID DDG +KI + +
Sbjct: 546 HRSEMSEHAPRIIEFKIHPEKIRDVIGKGGSVIRAITEETGA-TIDINDDGVIKIFSVEK 604
Query: 745 SSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAK 804
++ E++K I +T VG +Y ++ + +G FV I PGR+GL HIS++ +
Sbjct: 605 AAGEEAKKRIRLITADVEVGKVYEG-KVARLMDFGAFVTILPGRDGLVHISQICEERVQS 663
Query: 805 AEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLP 837
D + GD V VK++EV+ +G++RLS +A+ P
Sbjct: 664 VSDKLSEGDAVRVKVLEVDKQGRIRLSMKAVEP 696
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,449,906,991
Number of Sequences: 23463169
Number of extensions: 636473193
Number of successful extensions: 1542997
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9697
Number of HSP's successfully gapped in prelim test: 4224
Number of HSP's that attempted gapping in prelim test: 1494701
Number of HSP's gapped (non-prelim): 29945
length of query: 916
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 764
effective length of database: 8,792,793,679
effective search space: 6717694370756
effective search space used: 6717694370756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 82 (36.2 bits)