Query 002487
Match_columns 916
No_of_seqs 508 out of 4329
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 16:59:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002487.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1206-1210//hhsearch_pdb/002487hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aid_A Polyribonucleotide nucl 1.0 1 1 1362.7 66.0 703 87-845 16-718 (726)
2 1e3p_A Guanosine pentaphosphat 1.0 1 1 1328.0 56.5 721 59-849 9-755 (757)
3 3cdi_A Polynucleotide phosphor 1.0 1 1 1319.0 57.8 701 87-845 8-708 (723)
4 3u1k_A Polyribonucleotide nucl 1.0 1 1 1155.5 66.3 618 88-758 4-629 (630)
5 3gme_A Polyribonucleotide nucl 1.0 1 1 1087.7 54.7 548 87-690 2-549 (549)
6 3m7n_D Probable exosome comple 1.0 1 1 364.0 22.7 223 443-684 11-239 (258)
7 2wnr_B Probable exosome comple 1.0 1 1 357.8 25.0 227 441-686 9-238 (240)
8 2nn6_B Exosome complex exonucl 1.0 1 1 357.7 22.7 230 441-687 9-241 (249)
9 2po1_A Probable exosome comple 1.0 1 1 352.6 23.2 226 441-685 9-237 (249)
10 3hkm_A OS03G0854200 protein; R 1.0 1 1 349.7 23.7 218 446-686 2-234 (246)
No 1
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=1.00 E-value=1 Score=1362.70 Aligned_cols=703 Identities=42% Similarity=0.708 Sum_probs=670.6
Q ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 99606986427914999967555578853999969969999999418999999977531020421213666889875557
Q 002487 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKRE 166 (916)
Q Consensus 87 ~~~~~~~~~~~~R~i~~etG~la~qAdGSa~v~~G~T~Vl~tV~~~~~~~~~~df~pL~v~y~ek~~A~g~iPg~f~kRe 166 (916)
++.+++++++++|++++|||++|+||+|||++++|+|+|||||+++.+++++++|+||+|+|+||+||+|+|||||+|||
T Consensus 16 ~~~~~~~~~~~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g~df~pltveY~ek~~a~G~iPg~~~~RE 95 (726)
T 4aid_A 16 FDIKRKTIEWGGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPGQDFFPLTVNYQEKTFAAGKIPGGFFKRE 95 (726)
T ss_dssp CCEEECCCEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGGTCCCCSTTCSC
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCCCCC
T ss_conf 57689999989966999979726778846999989969999999467788998876721565550121465777665778
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEE
Q ss_conf 89991054688884186644435887571899999995159998669999999999619999999962799999999999
Q 002487 167 GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKF 246 (916)
Q Consensus 167 g~p~~~eil~sRlIdR~lRplfp~~~~~~vqI~~~Vls~Dg~~~~~~~ainaAs~AL~~sgIP~~~~vaav~vg~i~g~~ 246 (916)
|+|+++|+|++|||||+|||+||++|++++||+|+||++||+++++++||||||+||++|+|||++||+|||||+++|++
T Consensus 96 Grps~~~~li~RlIdR~lRplf~~~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~ 175 (726)
T 4aid_A 96 GRPSEKETLVSRLIDRPIRPLFVKGFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAY 175 (726)
T ss_dssp CSCCHHHHHHHHHHHHHHGGGBCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEE
T ss_conf 79980150687776875511315677653699999996699987568999999999972399867975799999999999
Q ss_pred EECCCHHHHHHCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 98799678860870089996157099999149989999999999999999999999999999980999844689999945
Q 002487 247 IVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326 (916)
Q Consensus 247 iidPt~~E~~~s~~dl~vagt~~~i~mie~~~~~~see~l~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~~~~~ 326 (916)
++|||++|++.|++||+|++|+++++|+|+++++|++++|.+||++||++|+.++++|+++++++||+|+++..+ .+++
T Consensus 176 vldPt~~E~~~s~~dl~va~t~~~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~~k~~~~~~-~~~~ 254 (726)
T 4aid_A 176 VLNPTLDEMKESKMDLVVAGTADAVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFAFEPE-DTDA 254 (726)
T ss_dssp EESCCHHHHHTCSEEEEEEECSSCEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCCC-TTHH
T ss_pred EECCCHHHHHHCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCHH
T ss_conf 989798999628545999970780899982698889999999999999999999999999999729986457899-9989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99999999899999998335813799999999999999986269766665445213456655674321001116765677
Q 002487 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEG 406 (916)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (916)
+.+.+++++++++++|+.+++|++|+++++++++++.+.|.++. .+ +++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~------------------~~--~~~----------- 303 (726)
T 4aid_A 255 IKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLSD------------------EN--PTG----------- 303 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTCCT------------------TS--SCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC------------------CC--CCC-----------
T ss_conf 99999999999999997255628899999999999999865430------------------56--442-----------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEE
Q ss_conf 54347877788886544677999999989999999996699788999999854669994998997660599858969999
Q 002487 407 DVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLA 486 (916)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~ 486 (916)
+...+++.+|++++++.+|++|+++|.|+|||.++|+|||+|++|+++++||||+|++|+|||+|
T Consensus 304 ---------------~~~~~~~~~~~~~~~~~~r~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~ 368 (726)
T 4aid_A 304 ---------------YDPLKLGAIFKELEADVVRRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIV 368 (726)
T ss_dssp ---------------CCSSSHHHHHHHHHHHHHHHHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEE
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEE
T ss_conf ---------------22899999999998999999986679789899977733649997988998833899868909999
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99934721000026888877133899998527998655567899982467999999997210168999998489999999
Q 002487 487 VITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566 (916)
Q Consensus 487 ~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~tI~I~~~V 566 (916)
+||+||.++.++.|.+.. ...++|++||+|+|||++++++.|+|++|+++|+++++|+|+++|+..++|||+|+|+++|
T Consensus 369 ~Vt~Gp~~~~~~~d~l~~-~~~g~~~~~y~~~P~st~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~tI~V~~~V 447 (726)
T 4aid_A 369 VATLGTGDDEQFIDALEG-TYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYTIRLVSEI 447 (726)
T ss_dssp EEEEECGGGSEEEEETTE-EEEECEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCC-CCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 999278776544233468-8846999999837876655466788524568999999999998527002577699999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEEECCCCEEEE
Q ss_conf 82499853037768999999459985541208999997268778899972660699814452099558999337762599
Q 002487 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAF 646 (916)
Q Consensus 567 LesdGs~~~Aav~aaslAL~dAGIPik~~vagvsvgli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vagt~~git~l 646 (916)
|++|||++|||+||++|||+||||||+++|+||+||++++++ +|.+|+||++.||++++|||+|+++.++|+++
T Consensus 448 LesDGs~~~AsI~aa~lAL~DAGIPm~~~VaavsvGli~~g~------~~~iLlD~~~~Ed~~gd~d~~Va~t~~gIt~l 521 (726)
T 4aid_A 448 TESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLILEQD------GFAVLSDILGDEDHLGDMDFKVAGTSEGLTSL 521 (726)
T ss_dssp EECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEECSS------CEEEEESCCTTGGGGSSEEEEEEEETTEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC------CEEEEECCCHHHHHCCCCEEEEEECCCCEEEE
T ss_conf 983996899999999999996699631672699999983898------65797169966885277338997569946999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 82100368799999999999873217999999850999999878998739999646320112024870368899988377
Q 002487 647 QMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGV 726 (916)
Q Consensus 647 q~d~k~ggis~~~l~eal~~A~~a~~~Il~~m~~~I~~~r~~~s~~aP~i~~~~I~~~ki~~vIG~gGk~Ik~I~~e~~~ 726 (916)
||++|.++++.++|.+||++|+++|.+|++.|++++..+|.++++|+|++.+++|+|+||+++||||||+||.|+++||+
T Consensus 522 Q~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~ 601 (726)
T 4aid_A 522 QMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGA 601 (726)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-------------------------------
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 96278588599999999999999999999999999875665532248727999578788886507884658899999889
Q ss_pred CEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 14304788611488166110899999998421188788299832799995060999988981567965334842124833
Q 002487 727 EAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806 (916)
Q Consensus 727 ~~Idi~ddg~v~I~~~~~~~~~~a~~~i~~l~~~~~vG~iv~G~~V~~I~~fGaFVel~~g~~GlihiSels~~~v~~~~ 806 (916)
+ |||+|+|+|.|++.+.+++++|+++|+.++.++++|++|+| +|++|++||+||+|.+|++||||+|+++|+|+.++.
T Consensus 602 ~-idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G-~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~ 679 (726)
T 4aid_A 602 K-VDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDG-KVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPS 679 (726)
T ss_dssp -------------CCSCHHHHHHHHHC-----------------------------------------------------
T ss_pred C-EEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCC
T ss_conf 0-45878966999968999999999999998631037819999-999993267999977993799897990864314720
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 333578899999999928981699984247787889999
Q 002487 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845 (916)
Q Consensus 807 ~~~kvGd~V~VkVl~iD~~~kI~LSlK~~~~~p~~~~~~ 845 (916)
++|++||.|+|||+++|.++||.||+|++.++||....+
T Consensus 680 d~~kvGD~V~VkVi~iD~~grI~LS~K~~~~~~G~~~~~ 718 (726)
T 4aid_A 680 DVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQETGEDLSK 718 (726)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHH
T ss_conf 127999999999999989996789995156686333445
No 2
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=1.00 E-value=1 Score=1328.02 Aligned_cols=721 Identities=37% Similarity=0.606 Sum_probs=672.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCEEEEEE-CCEEEEEEEEECCCCCC
Q ss_conf 54333222123799888663478899999960698642791499996755557885399996-99699999994189999
Q 002487 59 YSERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTD-GETIIYTSVCLADVPSE 137 (916)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~i~~etG~la~qAdGSa~v~~-G~T~Vl~tV~~~~~~~~ 137 (916)
+|.++..+.| +|+ ++. .+.+++++++++|++++|||++|+||+|||++++ |+|+|||||++++++++
T Consensus 9 ~~~~~~~~~~--~~~-----~~~-----~~~~~~~~~~~~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~ 76 (757)
T 1e3p_A 9 MGRGSGSEFM--ENE-----THY-----AEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKD 76 (757)
T ss_dssp -------------CC-----CEE-----EEEEEECGGGCEEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECT
T ss_pred CCCCCCCCCC--CCC-----CCC-----CCEEEEEEEECCEEEEEEECCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC
T ss_conf 4777663435--776-----554-----5228999999997599997840467982799997799699999985687888
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHH
Q ss_conf 99977531020421213666889875557899910546888841866444358875718999999951599986699999
Q 002487 138 PSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVT 217 (916)
Q Consensus 138 ~~df~pL~v~y~ek~~A~g~iPg~f~kReg~p~~~eil~sRlIdR~lRplfp~~~~~~vqI~~~Vls~Dg~~~~~~~ain 217 (916)
+.||+||+|+|+||+||+|||||||+||||+|+++|+|++|||||+|||+||++|++++||+|+||++|++++|+++|||
T Consensus 77 ~~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~e~l~~RlIdR~LRplfp~~~~~evqv~~~Vls~D~~~~~~~~ai~ 156 (757)
T 1e3p_A 77 QLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAIN 156 (757)
T ss_dssp TCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHHHHHHHHHHHHHGGGBCTTBCEEEEEEEEEEECCTTSCCHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf 78875089999750110456787655567589858999998877711321565778766999999997999888899999
Q ss_pred HHHHHHCCCCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCEEEEEEEE-----CCEEEEEEE------------CCCC
Q ss_conf 99999619999999962799999999999987996788608700899961-----570999991------------4998
Q 002487 218 AAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGS-----DDAILMIEG------------YCDF 280 (916)
Q Consensus 218 aAs~AL~~sgIP~~~~vaav~vg~i~g~~iidPt~~E~~~s~~dl~vagt-----~~~i~mie~------------~~~~ 280 (916)
|||+||++|+|||++||+|||||+++|++++|||++|++.|++||+|++| +++|+|+|+ ++++
T Consensus 157 gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~ 236 (757)
T 1e3p_A 157 AASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEA 236 (757)
T ss_dssp HHHHHHHHTTSSBCCCCEEEEEEEETTEEEESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCC
T ss_pred HHHHHHHCCCCCCCCCEEEEEEEEECCEEEECCCHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 99999963399877856999999999999989898999508446999953465788748999982456654333233588
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999980999844689-999945999999998999999983358137999999999
Q 002487 281 LSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTI-KLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLE 359 (916)
Q Consensus 281 ~see~l~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~ 359 (916)
+++++|.+||++||++|+.++.+|+++++++||+|+++.. +..++++.+.+++++.+++++|+++++|++|++++++++
T Consensus 237 ~se~~l~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~ 316 (757)
T 1e3p_A 237 PTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVK 316 (757)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCBCCSCCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89999999999999999999999999998659987667888899989999999999999999972556388999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999986269766665445213456655674321001116765677543478777888865446779999999899999
Q 002487 360 EKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFL 439 (916)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (916)
+++.+.|.++ . +. ...++..+|++++++.+
T Consensus 317 ~~~~~~~~~~---------------------~-~~----------------------------~~~~~~~~~~~~~k~~~ 346 (757)
T 1e3p_A 317 ALAAEKLLPE---------------------F-EG----------------------------REKEISAAYRALTKSLV 346 (757)
T ss_dssp HHHHTTSTTT---------------------T-CS----------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------C-CC----------------------------CHHHHHHHHHHHHHHHH
T ss_conf 9999976630---------------------2-33----------------------------48999999999989999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 99996699788999999854669994998997660599858969999999347210000268888771338999985279
Q 002487 440 RRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPP 519 (916)
Q Consensus 440 r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P 519 (916)
|+++++++.|+|||.++|+|||+|++|+++++||||+|++|+|||||+||+||.++.++.+.+.. ...++|++||+|+|
T Consensus 347 r~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~-~~~g~~~~~y~f~P 425 (757)
T 1e3p_A 347 RERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSP-VTRKRYMHNYNFPP 425 (757)
T ss_dssp HHHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSS-CCEESEEEEEECCG
T ss_pred HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCC-CCCEEEEEEEEECC
T ss_conf 99873379778998834446606996888998879999978968999999368873223234577-77359999999578
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 98655567899982467999999997210168999998489999999824998530377689999994599855412089
Q 002487 520 SSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599 (916)
Q Consensus 520 ~s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~tI~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagv 599 (916)
||++++++.|+|++||++|+++++|+|+++|+..++|||+|+|+++||++|||++||++||+++||+||||||+++|+||
T Consensus 426 ~st~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaav 505 (757)
T 1e3p_A 426 YSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGI 505 (757)
T ss_dssp GGGTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 66666567899865689999999999998605114688799999999977997799999999999997599752446899
Q ss_pred EEEEECCC-CCCCCCCCCEEECCCCHHHHHCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997268-77889997266069981445209955899933776259982100368799999999999873217999999
Q 002487 600 AMGMVLDT-DEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEM 678 (916)
Q Consensus 600 svgli~~~-~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vagt~~git~lq~d~k~ggis~~~l~eal~~A~~a~~~Il~~m 678 (916)
+||+++++ + ++.+|.+|+||++.||++++|+|+|+++.++|+++|+++|.++++.+++.+|+++|+++|.+|++.|
T Consensus 506 s~gli~eg~d---g~~~~~iLlDp~~~Ed~~gd~d~~Va~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m 582 (757)
T 1e3p_A 506 AMGLISQEIN---GETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVM 582 (757)
T ss_dssp EEEEEEEESS---SCEEEEEEESCCHHHHHHCSEEEEEEECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCC---CCCCEEEEECCCHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999845888---7645059957987998544864999936992899997697443399999999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 85099999987899873999964632011202487036889998837714304788611488166110899999998421
Q 002487 679 LKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758 (916)
Q Consensus 679 ~~~I~~~r~~~s~~aP~i~~~~I~~~ki~~vIG~gGk~Ik~I~~e~~~~~Idi~ddg~v~I~~~~~~~~~~a~~~i~~l~ 758 (916)
++++..+ .++++|+|++.+++|||+||+++||+|||+||.|++++|+. |||+++|.+.|++.+....++++++++.+.
T Consensus 583 ~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~-IdI~~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 583 MEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAE-ITIEDDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp HHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSC-C--------CCCBSSHHHHCC---------
T ss_pred HHHHCCC-CCCCCCCCEEEEEEECHHHEEHCCCCCCEEEEHHHHHHCCE-EEECCCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9986263-23343576049999785871000265601102156853978-996688509993688899999999998732
Q ss_pred --CCCCCCCEEECCEEEEEECCEEEEEECCCEEEEEECCCC----CCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf --188788299832799995060999988981567965334----84212483333357889999999992898169998
Q 002487 759 --MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISEL----SSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSR 832 (916)
Q Consensus 759 --~~~~vG~iv~G~~V~~I~~fGaFVel~~g~~GlihiSel----s~~~v~~~~~~~kvGd~V~VkVl~iD~~~kI~LSl 832 (916)
.++++|++|+| +|+++++||+||+|.+|++||||+|++ +|+|+.++.++|++||.|+|||+++|.++||.||+
T Consensus 661 ~p~~~~vG~i~~G-~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~ 739 (757)
T 1e3p_A 661 NPTSPEVGERILG-SVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIP 739 (757)
T ss_dssp ------------C-BEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC-----
T ss_pred CHHHCCCCCEEEE-EEEECCCCEEEEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEE
T ss_conf 6312443668999-999701437999976991799996881534477752684002699999999999998999789998
Q ss_pred EECCCCCCCCCCCCCCC
Q ss_conf 42477878899999889
Q 002487 833 RALLPEADAENPPVKLP 849 (916)
Q Consensus 833 K~~~~~p~~~~~~~~~~ 849 (916)
|.+.++||..... ++.
T Consensus 740 k~~~~~pw~~~~~-~~~ 755 (757)
T 1e3p_A 740 VIEGEEAASDEKK-DDA 755 (757)
T ss_dssp -----------------
T ss_pred ECCCCCCHHHHHH-CCC
T ss_conf 0288783334420-146
No 3
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=1.00 E-value=1 Score=1318.97 Aligned_cols=701 Identities=42% Similarity=0.702 Sum_probs=668.7
Q ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 99606986427914999967555578853999969969999999418999999977531020421213666889875557
Q 002487 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKRE 166 (916)
Q Consensus 87 ~~~~~~~~~~~~R~i~~etG~la~qAdGSa~v~~G~T~Vl~tV~~~~~~~~~~df~pL~v~y~ek~~A~g~iPg~f~kRe 166 (916)
++.+++++++++|++++|||++|+||||||++++|+|+|||||+++.+|+++.+|+||+|+|+||+||+|+|||||+|||
T Consensus 8 ~~~~~~~~~~~~r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~~~f~pltv~y~ek~~a~g~ipg~f~kRe 87 (723)
T 3cdi_A 8 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRRE 87 (723)
T ss_dssp CCCEEEEEEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSSCCSCCEEEEEEECGGGGTCCCC------
T ss_pred CCEEEEEEEECCEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 22489999999988999958442579854999999979999998468788999906689998670132456777554678
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEE
Q ss_conf 89991054688884186644435887571899999995159998669999999999619999999962799999999999
Q 002487 167 GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKF 246 (916)
Q Consensus 167 g~p~~~eil~sRlIdR~lRplfp~~~~~~vqI~~~Vls~Dg~~~~~~~ainaAs~AL~~sgIP~~~~vaav~vg~i~g~~ 246 (916)
|+|+++|+|++|+|||+|||+||++|+|++||+|+||++||++++|++||||||+||++|+|||++|++|||||++||+|
T Consensus 88 Grpse~e~l~sRlIdR~lRplfp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~ 167 (723)
T 3cdi_A 88 GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQY 167 (723)
T ss_dssp -CCCHHHHHHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHCCCCHHCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCEE
T ss_conf 79876884898876760142336567513899999997289978789999999999984299978974899999999999
Q ss_pred EECCCHHHHHHCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 98799678860870089996157099999149989999999999999999999999999999980999844689999945
Q 002487 247 IVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326 (916)
Q Consensus 247 iidPt~~E~~~s~~dl~vagt~~~i~mie~~~~~~see~l~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~~~~~ 326 (916)
|+|||++|++.|+++|+|+|++++++|+|++++++++++|++||++||++++.++++|+++++++||+|+++..+..+++
T Consensus 168 v~nPt~~e~~~s~~~lvvagt~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (723)
T 3cdi_A 168 VLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 247 (723)
T ss_dssp EESCCTTGGGGCSEEEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCCCCCCCCTT
T ss_pred EECCCHHHHHHCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 98969899971880599994688799995789999999999999999999999999999999983898644778899989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99999999899999998335813799999999999999986269766665445213456655674321001116765677
Q 002487 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEG 406 (916)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (916)
+.+.+++++++++++|+++.+|++|+++++++++++.+.|.++. . +.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~--------------------~-~~------------ 294 (723)
T 3cdi_A 248 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAED--------------------E-TL------------ 294 (723)
T ss_dssp GGGSSTTTTHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHS--------------------C-CC------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--------------------C-CC------------
T ss_conf 99999999899999997455638899999999999999866303--------------------4-23------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEE
Q ss_conf 54347877788886544677999999989999999996699788999999854669994998997660599858969999
Q 002487 407 DVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLA 486 (916)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~ 486 (916)
...++..+|++++++++|++++++++|+|||.++|+|||+|++|+++++||||+|++|+|||+|
T Consensus 295 ----------------~~~~~~~~~~~~~k~~vr~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~ 358 (723)
T 3cdi_A 295 ----------------DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALV 358 (723)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEE
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCEEEE
T ss_conf ----------------5899999999998999999875369678999803005626896888998869999989948999
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99934721000026888877133899998527998655567899982467999999997210168999998489999999
Q 002487 487 VITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566 (916)
Q Consensus 487 ~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~tI~I~~~V 566 (916)
+||+||.++.+..+.+.. ...++|++||+|+|||++++++.|.|++||++|+++++|+|+++|+++++|||+|+|+++|
T Consensus 359 ~Vt~gp~e~~~~~d~l~~-~~~g~~~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~tI~Vd~~V 437 (723)
T 3cdi_A 359 TATLGTARDAQVLDELMG-ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 437 (723)
T ss_dssp EEEECC--------------CTTSEEEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCSCEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 999467543457765578-8754999999638877666456889877899999999999997447335787799999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEEECCCCEEEE
Q ss_conf 82499853037768999999459985541208999997268778899972660699814452099558999337762599
Q 002487 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAF 646 (916)
Q Consensus 567 LesdGs~~~Aav~aaslAL~dAGIPik~~vagvsvgli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vagt~~git~l 646 (916)
|++|||++||++||+++||+||||||+++|+|++||++++++ +|.+|+||++.||++++|+|+|+++.+||+++
T Consensus 438 LesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs~gli~~g~------~~~iL~Dp~~~Ed~~~d~d~~Va~t~~gI~~l 511 (723)
T 3cdi_A 438 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------NYVVLSDILGDEDHLGDMDFKVAGSRDGISAL 511 (723)
T ss_dssp EECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEETT------EEEEESSCCGGGGGGCSEEEEEEECSSCEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCC------CEEEEECCCHHHHHHCCCEEEECCCCCCEEEE
T ss_conf 968998788999999999850799863325559999982898------05999889857865235203331569926999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHCC
Q ss_conf 82100368799999999999873217999999850999999878998739999646320112024870368899988377
Q 002487 647 QMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGV 726 (916)
Q Consensus 647 q~d~k~ggis~~~l~eal~~A~~a~~~Il~~m~~~I~~~r~~~s~~aP~i~~~~I~~~ki~~vIG~gGk~Ik~I~~e~~~ 726 (916)
|+++|.++++.+++.+|+++|++++.+|++.|++++..++.++++|+|++.+++|+|+||+++|||||++|+.|++++|+
T Consensus 512 q~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~ 591 (723)
T 3cdi_A 512 QMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 591 (723)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------------------------
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEEEECHHHHCCCCCCCCEEEEEEEHHHCC
T ss_conf 96896589699999999999999999999999998610200002458669999978899300115554064102163396
Q ss_pred CEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 14304788611488166110899999998421188788299832799995060999988981567965334842124833
Q 002487 727 EAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAE 806 (916)
Q Consensus 727 ~~Idi~ddg~v~I~~~~~~~~~~a~~~i~~l~~~~~vG~iv~G~~V~~I~~fGaFVel~~g~~GlihiSels~~~v~~~~ 806 (916)
. |||+++|.+.|++.+...+++++++|+.+..++++|++|+| +|+++.+||+||+|.+|++||||+|+++|+|+.++.
T Consensus 592 ~-IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G-~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~ 669 (723)
T 3cdi_A 592 T-IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTG-KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 669 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred E-EEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEE-EEEEEECCEEEEEECCCCEEEEEHHHCCCCCCCCCC
T ss_conf 6-77637752999448889999999999997535406858999-999995245999967994699998985774435704
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 333578899999999928981699984247787889999
Q 002487 807 DVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPP 845 (916)
Q Consensus 807 ~~~kvGd~V~VkVl~iD~~~kI~LSlK~~~~~p~~~~~~ 845 (916)
++|++||.|+|||+++|.++||.||+|.+.++||....+
T Consensus 670 ~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~~g~~~~p 708 (723)
T 3cdi_A 670 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAP 708 (723)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
T ss_conf 334899999999999989995899997546788765586
No 4
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=1.00 E-value=1 Score=1155.53 Aligned_cols=618 Identities=36% Similarity=0.613 Sum_probs=577.4
Q ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 96069864279149999675555788539999699699999994189999999775310204212136668898755578
Q 002487 88 QPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREG 167 (916)
Q Consensus 88 ~~~~~~~~~~~R~i~~etG~la~qAdGSa~v~~G~T~Vl~tV~~~~~~~~~~df~pL~v~y~ek~~A~g~iPg~f~kReg 167 (916)
+...+++++++|++++|||++++||||||++++|+|+|||||+++++++++ +|+||+|+|++++||+|||||+|+||||
T Consensus 4 ~~~~~~~~~~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~-df~pL~v~y~~~~~a~g~iPg~f~kReg 82 (630)
T 3u1k_A 4 MASAVAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-QFMPLVVDYRQKAAAAGRIPTNYLRREV 82 (630)
T ss_dssp CCEEEEEECSSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS-SSCCEEEEEECSEETTTTEECTTC----
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCC-CEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 542699999998799996874666883699998996999999846888877-7467999987523225778764335688
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEEE
Q ss_conf 99910546888841866444358875718999999951599986699999999996199999999627999999999999
Q 002487 168 RTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFI 247 (916)
Q Consensus 168 ~p~~~eil~sRlIdR~lRplfp~~~~~~vqI~~~Vls~Dg~~~~~~~ainaAs~AL~~sgIP~~~~vaav~vg~i~g~~i 247 (916)
+|+++|+|++|+|||+|||+||++|+|++||+|+||++||+++++++||||||+||++|+|||++||+|||||+++|++|
T Consensus 83 rps~~e~lisRlIdR~lRp~~~~~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~v 162 (630)
T 3u1k_A 83 GTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYV 162 (630)
T ss_dssp -CCHHHHHHHHHHHHHHGGGSCTTCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCEEE
T ss_conf 99778999999870776644355677761999999977999877789999999999615887678757999999899999
Q ss_pred ECCCHHHHHHCCEEEEEEEECC-EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCH
Q ss_conf 8799678860870089996157-09999914998999999999999999999999999999998099984468999-994
Q 002487 248 VNPTTQEMEDSQLDLLLAGSDD-AILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKL-PPP 325 (916)
Q Consensus 248 idPt~~E~~~s~~dl~vagt~~-~i~mie~~~~~~see~l~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~-~~~ 325 (916)
+|||++|++.|++||+|+++.+ +|+|+|++++++++++|.+||++|+++|+.++++|+++++++||+|+++..+. .++
T Consensus 163 ldPt~~E~~~s~~dl~Va~t~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (630)
T 3u1k_A 163 VNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSP 242 (630)
T ss_dssp ESCCHHHHHTEEEEEEEEEETTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCCCCCCH
T ss_pred ECCCHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 87998999637854999981699689998988668999999999999999999999999999997898754777778998
Q ss_pred HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 59999999989999999833--5813799999999999999986269766665445213456655674321001116765
Q 002487 326 ELYKHVEEIAGEELVKVLQI--KNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEV 403 (916)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~--~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (916)
++.+.+++++++++++++++ ++|++|+++++++++++.+.|.++. . ++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~--------------------~-~~--------- 292 (630)
T 3u1k_A 243 EIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKF--------------------P-EA--------- 292 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHC--------------------C-SC---------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC--------------------C-CC---------
T ss_conf 99999999999999999741376668999999999999999865436--------------------7-53---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEE
Q ss_conf 67754347877788886544677999999989999999996699788999999854669994998997660599858969
Q 002487 404 DEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQ 483 (916)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~Tq 483 (916)
...+++.+|++++++.+|++|+++|+|+|||.++|+|||+|++|+++++||||+|++|+||
T Consensus 293 -------------------~~~~~~~~~~~~~~~~~r~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~ 353 (630)
T 3u1k_A 293 -------------------DPYEIIESFNVVAKEVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQ 353 (630)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEE
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEE
T ss_conf -------------------5999999999998999999986679778899976633569997998998851799979939
Q ss_pred EEEEEEECCCCCCCCCCCCC---CCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 99999934721000026888---877133899998527998655567899982467999999997210168999998489
Q 002487 484 SLAVITLGDKQMAQRIDNLE---SDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTI 560 (916)
Q Consensus 484 Vl~~Vt~Gp~~~~~~~d~~~---~~~~~~~~~~~~~f~P~s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~tI 560 (916)
|+|+||.++..+.++.|.++ .....++|++||+|+|||++++++.|+|++||++|+++++|+|+++++. +|||+|
T Consensus 354 Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~~--~~p~tI 431 (630)
T 3u1k_A 354 VLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR--DFPFTI 431 (630)
T ss_dssp EEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSCT--TCSSEE
T ss_pred EEEEEECCCCCCHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEE
T ss_conf 999998478870110133332347887369999998667766665667899767899999999999863756--698699
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCC-CCCCCCEEECCCCHHHHHCCCCCEEEEEC
Q ss_conf 99999982499853037768999999459985541208999997268778-89997266069981445209955899933
Q 002487 561 RVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEF-GGDGTPLILSDITGSEDASGDMDFKVAGN 639 (916)
Q Consensus 561 ~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagvsvgli~~~~~~-~~~~~~~iL~Dp~~~Ed~~gd~df~Vagt 639 (916)
+|+++||++|||++||++||+++||+||||||+++|+||+||++++.+.. ++.++|.+|+||++.||++++|||+|++|
T Consensus 432 ~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Vaavs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t 511 (630)
T 3u1k_A 432 RVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 511 (630)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEEC
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHCCCEEEEEEC
T ss_conf 99999998699778899999999999679972360678999996477755565557527855987788537603999966
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHH
Q ss_conf 77625998210036879999999999987321799999985099999987899873999964632011202487036889
Q 002487 640 EDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKS 719 (916)
Q Consensus 640 ~~git~lq~d~k~ggis~~~l~eal~~A~~a~~~Il~~m~~~I~~~r~~~s~~aP~i~~~~I~~~ki~~vIG~gGk~Ik~ 719 (916)
.+||+++|+++|..+++.++|.+||++|+++|.+|++.|++++..||.++++|+|++++++|+|+||+.+|||||++||.
T Consensus 512 ~~gIt~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~ 591 (630)
T 3u1k_A 512 NKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKK 591 (630)
T ss_dssp SSCEEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHH
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHEEECCCCHHHHH
T ss_conf 99569999447878879999999999999999999999999998777653025873799996856703137999755999
Q ss_pred HHHHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 998837714304788611488166110899999998421
Q 002487 720 IIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLT 758 (916)
Q Consensus 720 I~~e~~~~~Idi~ddg~v~I~~~~~~~~~~a~~~i~~l~ 758 (916)
|+++||++ |+|+|+|+|.|++.+.+++++|+++|+.++
T Consensus 592 I~e~tg~~-I~I~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 592 LQAETGVT-ISQVDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp HHHHHCCE-EEECSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred HHHHHCCE-EEECCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 99988987-998388179999699999999999999985
No 5
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=1.00 E-value=1 Score=1087.70 Aligned_cols=548 Identities=44% Similarity=0.714 Sum_probs=522.5
Q ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 99606986427914999967555578853999969969999999418999999977531020421213666889875557
Q 002487 87 PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKRE 166 (916)
Q Consensus 87 ~~~~~~~~~~~~R~i~~etG~la~qAdGSa~v~~G~T~Vl~tV~~~~~~~~~~df~pL~v~y~ek~~A~g~iPg~f~kRe 166 (916)
++.+++++++++|++++|||++|+||+|||++++|+|+|||||+++++++++.|||||+|+|+||+||+|+|||||+|||
T Consensus 2 ~~~~~~~~~~~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g~df~Pltv~Y~e~~~a~G~iPg~~~~RE 81 (549)
T 3gme_A 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRRE 81 (549)
T ss_dssp CCCEEEEEEETTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTTCCSCCEEEEEEECGGGTTCCCSCC----
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEEHHHCCCCCCCCCCCC
T ss_conf 87489999989987999978716778867999999989999998468888999986623565550122365787675768
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCEE
Q ss_conf 89991054688884186644435887571899999995159998669999999999619999999962799999999999
Q 002487 167 GRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKF 246 (916)
Q Consensus 167 g~p~~~eil~sRlIdR~lRplfp~~~~~~vqI~~~Vls~Dg~~~~~~~ainaAs~AL~~sgIP~~~~vaav~vg~i~g~~ 246 (916)
|+|+++|+|++|||||+|||+||++|++++||+|+||++||+++|+++||||||+||++|+|||+|||+|||||++||++
T Consensus 82 Grps~~~~l~~RlIdR~lRplfp~~~~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~ 161 (549)
T 3gme_A 82 GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQY 161 (549)
T ss_dssp -CCCHHHHHHHHHHHHHHGGGSCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCEE
T ss_conf 89880261787876776512414677663799999996698986779999999999962399867974699999999999
Q ss_pred EECCCHHHHHHCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 98799678860870089996157099999149989999999999999999999999999999980999844689999945
Q 002487 247 IVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPE 326 (916)
Q Consensus 247 iidPt~~E~~~s~~dl~vagt~~~i~mie~~~~~~see~l~~al~~a~~~~~~i~~~~~~~~~~~g~~k~~~~~~~~~~~ 326 (916)
|+|||++|++.|++||+|++++++|+|+|+++++|++++|.+||++||++|+.++++|+++++++||+|+++..+..+++
T Consensus 162 vlnPt~~e~~~s~~dl~va~t~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~~~~~~~~ 241 (549)
T 3gme_A 162 VLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 (549)
T ss_dssp EESCCTTTTTTCSBCEEEEECSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_pred EECCCHHHHHHCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 98989899951854799996078089998169889999999999999999999999999999983998646888899989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99999999899999998335813799999999999999986269766665445213456655674321001116765677
Q 002487 327 LYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEG 406 (916)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (916)
+.+.+++.+++++++++.+++|++|+++++++++++.+.|.++. . +.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~--------------------~-~~------------ 288 (549)
T 3gme_A 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAED--------------------E-TL------------ 288 (549)
T ss_dssp HHTTC--------------CCHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--------------------C-CC------------
T ss_conf 99999999999999997154628899999999999999865316--------------------6-41------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEE
Q ss_conf 54347877788886544677999999989999999996699788999999854669994998997660599858969999
Q 002487 407 DVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLA 486 (916)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~ 486 (916)
...+++.+|++++++.+|++|+++|+|+|||.++|+|||+|++|+++++||||+|++|+|||+|
T Consensus 289 ----------------~~~~~~~~~~~~~~~~~R~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~ 352 (549)
T 3gme_A 289 ----------------DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALV 352 (549)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEE
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEE
T ss_conf ----------------5899999999999999999985679889898977720539997988998823899979949999
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99934721000026888877133899998527998655567899982467999999997210168999998489999999
Q 002487 487 VITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTI 566 (916)
Q Consensus 487 ~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~tI~I~~~V 566 (916)
+||+||.++.+..+.+.. ...++|++||+|+|||++++++.|+|++||++|+++++|+|+++|++.++|||+|+|+++|
T Consensus 353 ~Vt~gp~~~~~~~~~l~~-~~~g~~~~~y~~~P~st~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~tI~V~~~V 431 (549)
T 3gme_A 353 TATLGTARDAQVLDELMG-ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 (549)
T ss_dssp EEEEEC----------------CCEEEEEECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCC-CCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 998457553457655578-8736999999838987677666789973589999999999998558001487599999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEEECCCCEEEE
Q ss_conf 82499853037768999999459985541208999997268778899972660699814452099558999337762599
Q 002487 567 TESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAF 646 (916)
Q Consensus 567 LesdGs~~~Aav~aaslAL~dAGIPik~~vagvsvgli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vagt~~git~l 646 (916)
|++|||++||++||+++||+||||||+++|+||+||++++++ +|.+|+||++.||++++|||+|++|.+|++++
T Consensus 432 LesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~~g~------~~~iL~D~~~~Ed~~~d~d~~Va~t~~gital 505 (549)
T 3gme_A 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------NYVVLSDILGDEDHLGDMDFKVAGSRDGISAL 505 (549)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEEETT------EEEEEESCCHHHHHHSSEEEEEEECSSCEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC------CEEEEECCCHHHHCCCCCEEEEEECCCCEEEE
T ss_conf 987997899999999999996799744626689999974897------35898359967870678649999669973999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 82100368799999999999873217999999850999999878
Q 002487 647 QMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLS 690 (916)
Q Consensus 647 q~d~k~ggis~~~l~eal~~A~~a~~~Il~~m~~~I~~~r~~~s 690 (916)
|||+|++|++.+++.+||++|+++|.+|++.|++++..||.+++
T Consensus 506 qmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~pr~~~~ 549 (549)
T 3gme_A 506 QMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 (549)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC----
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97153287599999999999999999999999999874463349
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=1.00 E-value=1 Score=363.96 Aligned_cols=223 Identities=30% Similarity=0.427 Sum_probs=203.0
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC
Q ss_conf 96699788999999854669994998997660599858969999999347210000268888771338999985279986
Q 002487 443 IVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSV 522 (916)
Q Consensus 443 il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~s~ 522 (916)
++.+|+|+|||.++|+|||.+++|+++++||||+|++|+|+|+|+| +||.+..+.... ....+++++||+|+|||+
T Consensus 11 ~i~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~~~---~~~~g~l~~~~~~~P~s~ 86 (258)
T 3m7n_D 11 LIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAV-FGPREVHPEHLQ---DPSKAIIRYRYNMAPFSV 86 (258)
T ss_dssp SEETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEE-EEEEECSSSTTC---CSSSCEEEEEEEECGGGS
T ss_pred HHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEE-ECCCCCCCCCCC---CCCCEEEEEEEEECCCCC
T ss_conf 8845979999986774673999798789895389998992999999-726677775336---897369999998578665
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 555678999824679999999972101689999984-8999999982499853037768999999459985541208999
Q 002487 523 GEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY-TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAM 601 (916)
Q Consensus 523 ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~-tI~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagvsv 601 (916)
+++++ ++|++++++++++++|+|+++|++ +.||+ +|+|+++||++|||+++|++||+++||+||||||+++|+++++
T Consensus 87 ~~r~~-~~~~~re~ei~~li~r~l~~~i~~-~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsv 164 (258)
T 3m7n_D 87 EERKR-PGPDRRSIEISKVSKEAFEAVIMK-ELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAV 164 (258)
T ss_dssp SSCCC-SSCCHHHHHHHHHHHHHHHTTBCG-GGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEE
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHCCH-HHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 54347-889889999999999999861088-7688339999999998189779999999999999669997782389999
Q ss_pred EEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEEE-C-C---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9972687788999726606998144520995589993-3-7---762599821003687999999999998732179999
Q 002487 602 GMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG-N-E---DGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILA 676 (916)
Q Consensus 602 gli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vag-t-~---~git~lq~d~k~ggis~~~l~eal~~A~~a~~~Il~ 676 (916)
|++.+ .+|+||++.|++.++++|+|++ + . ++|+++|++ |+++.+++.+|+++|++++.+|++
T Consensus 165 g~i~~----------~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~---g~~~~~~l~~~l~~A~~~~~~i~~ 231 (258)
T 3m7n_D 165 GKADG----------QLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMD---GRMTRDEVKQAIELAKKGALQIYE 231 (258)
T ss_dssp EEETT----------EEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEE---EEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECC----------EEEECCCHHHHHCCCCEEEEEEECCCCCCCCEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999----------99989798998325854999997677789978999953---896999999999999999999999
Q ss_pred HHHHCCCC
Q ss_conf 99850999
Q 002487 677 EMLKCSPP 684 (916)
Q Consensus 677 ~m~~~I~~ 684 (916)
.|++++..
T Consensus 232 ~~~~~l~~ 239 (258)
T 3m7n_D 232 MQREAILR 239 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 7
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=1.00 E-value=1 Score=357.85 Aligned_cols=227 Identities=28% Similarity=0.409 Sum_probs=207.1
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99966997889999998546699949989976605998589699999993472100002688887713389999852799
Q 002487 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520 (916)
Q Consensus 441 ~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~ 520 (916)
++++++++|+|||.++|+|||.+++|+++++||||+|++|+|+|+|+| +||.+..+.. ...+..+++++||+|+||
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~---~~~~~~g~l~~~~~~~p~ 84 (240)
T 2wnr_B 9 QLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAV-YGPREAQIRK---LQRPDRAVIRCRYNMAPF 84 (240)
T ss_dssp ------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEE-EEEEECCSSS---SCCSSSCEEEEEEEECTT
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEE-ECCCCCCCCC---CCCCCCEEEEEEEEECCC
T ss_conf 764366836899896775676999498899877999997990999999-7577777655---468983799999996897
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 86555678999824679999999972101689999984-89999999824998530377689999994599855412089
Q 002487 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY-TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599 (916)
Q Consensus 521 s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~-tI~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagv 599 (916)
|+++++ .+++++++++++++++|+|++++++ +.||+ +|+|+++||++|||+++|++||+++||+|||+||+++++++
T Consensus 85 a~~~~~-~~~~~~~~~~l~~ll~r~l~~~i~l-~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~av 162 (240)
T 2wnr_B 85 SVEERK-RPGPDRRSVEISKITAEALRPALIL-EKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVAC 162 (240)
T ss_dssp SSSSCC-CSSCCHHHHHHHHHHHHHHGGGBCG-GGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEE
T ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCH-HHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 767755-7999766899999999999873279-88899599999999947998899999999999997599634653468
Q ss_pred EEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEE--ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997268778899972660699814452099558999--3377625998210036879999999999987321799999
Q 002487 600 AMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA--GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAE 677 (916)
Q Consensus 600 svgli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Va--gt~~git~lq~d~k~ggis~~~l~eal~~A~~a~~~Il~~ 677 (916)
++|++.+ .+|+||++.||+.++++++|+ ++.++++++|++ |+++.+++.+|+++|++++.+|++.
T Consensus 163 s~g~~~~----------~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~---g~~~~~~l~~~l~~A~~~~~~i~~~ 229 (240)
T 2wnr_B 163 AAGKVGD----------QVVLDLSEEEDKEGQADVPVAILPRTREITLLQSD---GNLTPEEFERALDLAVEGCLRIHEV 229 (240)
T ss_dssp EEEESSS----------SEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEE---ECBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC----------EEEECCCHHHHCCCCCEEEEEEECCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999899----------78708897886057813899998899989999997---5559999999999999999999999
Q ss_pred HHHCCCCCC
Q ss_conf 985099999
Q 002487 678 MLKCSPPPS 686 (916)
Q Consensus 678 m~~~I~~~r 686 (916)
|++++.++.
T Consensus 230 ~~~~l~~~~ 238 (240)
T 2wnr_B 230 QKEALRKRY 238 (240)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
T ss_conf 999987761
No 8
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=1.00 E-value=1 Score=357.74 Aligned_cols=230 Identities=24% Similarity=0.365 Sum_probs=207.8
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99966997889999998546699949989976605998589699999993472100002688887713389999852799
Q 002487 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520 (916)
Q Consensus 441 ~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~ 520 (916)
+.+++++.|+|||.++|+|||.+++|+++++||||+|++|+|+|+|+| +||.++... +. ......+++++||+|+||
T Consensus 9 ~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~g~~~~~~~-~~-~~~~~~g~l~~~~~~~p~ 85 (249)
T 2nn6_B 9 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVV-YGPHEIRGS-RA-RALPDRALVNCQYSSATF 85 (249)
T ss_dssp --CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEE-EEEEECCSS-SC-CCCCSSCCEEEEEEECTT
T ss_pred HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEE-ECCCCCCCC-CC-CCCCCCEEEEEEEECCCC
T ss_conf 300467867899896774775899588799880799997993999999-725786433-34-468984799999974897
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 86555678999824679999999972101689999984-89999999824998530377689999994599855412089
Q 002487 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY-TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599 (916)
Q Consensus 521 s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~-tI~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagv 599 (916)
|++++++.+++++++++++++++|+|++++++ +.||+ +|+|+++||++|||+++|++||+++||+||||||+++++++
T Consensus 86 a~~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~-~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~av 164 (249)
T 2nn6_B 86 STGERKRRPHGDRKSCEMGLQLRQTFEAAILT-QLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCAC 164 (249)
T ss_dssp TSSSCCCTTTSTHHHHHHHHHHHHHHHHTTCG-GGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCH-HHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 66666468999876999999999999975089-88898389999999968998999999999999996597555771458
Q ss_pred EEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEE--ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997268778899972660699814452099558999--3377625998210036879999999999987321799999
Q 002487 600 AMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVA--GNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAE 677 (916)
Q Consensus 600 svgli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Va--gt~~git~lq~d~k~ggis~~~l~eal~~A~~a~~~Il~~ 677 (916)
++|++.+ .+|+||++.||+.++++|+|+ ++.++|+++|++ |.++.+++.+|+++|++++.+|++.
T Consensus 165 s~g~~~~----------~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~---g~~~~~~l~~~l~~A~~~~~~i~~~ 231 (249)
T 2nn6_B 165 SAGFVDG----------TALADLSHVEEAAGGPQLALALLPASGQIALLEMD---ARLHEDHLERVLEAAAQAARDVHTL 231 (249)
T ss_dssp EEEEETT----------EEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEEC---SCCBTTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC----------EEEECCCHHHHCCCCCEEEEEEECCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999899----------68988984785347717999997899978999997---8849999999999999999999999
Q ss_pred HHHCCCCCCC
Q ss_conf 9850999999
Q 002487 678 MLKCSPPPSN 687 (916)
Q Consensus 678 m~~~I~~~r~ 687 (916)
|++++.++.+
T Consensus 232 ~~~~l~~~~~ 241 (249)
T 2nn6_B 232 LDRVVRQHVR 241 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999989998
No 9
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=1.00 E-value=1 Score=352.61 Aligned_cols=226 Identities=30% Similarity=0.444 Sum_probs=205.7
Q ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 99966997889999998546699949989976605998589699999993472100002688887713389999852799
Q 002487 441 RRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPS 520 (916)
Q Consensus 441 ~~il~~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~ 520 (916)
+++++++.|+|||.++|+|||.+++|+++++||||+|++|+|+|+|+| +||.+..+.. ......+++++||+|+||
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~gp~e~~~~~---~~~~~~g~l~v~~~~~p~ 84 (249)
T 2po1_A 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPRELHPKH---LQRPDRAILRVRYNMAPF 84 (249)
T ss_dssp CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEE-EEEEECSSGG---GCCSSSCEEEEEEEECGG
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEE-ECCCCCCCCC---CCCCCCEEEEEEEEECCC
T ss_conf 874456856899885665677999587689887999997993999999-7676667544---367884699999985786
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 86555678999824679999999972101689999984-89999999824998530377689999994599855412089
Q 002487 521 SVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPY-TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGV 599 (916)
Q Consensus 521 s~ge~~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~-tI~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagv 599 (916)
|+++++. ++|++++++++++++|+|+++|++ +.||+ +|+|+++||++|||+++|++||+++||+||||||+++++++
T Consensus 85 a~~~~~~-~~~~~~~~~~s~li~r~l~~~i~l-~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~av 162 (249)
T 2po1_A 85 SVEERKK-PGPDRRSIEISKVIKGALEPALIL-EMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAAC 162 (249)
T ss_dssp GSSSCCC-SSCCHHHHHHHHHHHHHHGGGBCG-GGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEE
T ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCH-HHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 5304447-899887999999999998741069-78899789999999955998899999999999985699856863789
Q ss_pred EEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCEEEEE--CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999972687788999726606998144520995589993--377625998210036879999999999987321799999
Q 002487 600 AMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAG--NEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAE 677 (916)
Q Consensus 600 svgli~~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vag--t~~git~lq~d~k~ggis~~~l~eal~~A~~a~~~Il~~ 677 (916)
++|++.+ .+|+||++.|++.++++|+|+. +.++|+++|++ |+++.+++.+|+++|++++.+|++.
T Consensus 163 s~g~~~~----------~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~---g~~~~~~l~~~l~~A~~~~~~i~~~ 229 (249)
T 2po1_A 163 AAGKIEG----------EIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229 (249)
T ss_dssp EEEEETT----------EEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCE---ECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC----------EEEECCCHHHHCCCCCEEEEEEECCCCCEEEEEEE---CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999----------99846748886357850899998899988999997---4249999999999999999999999
Q ss_pred HHHCCCCC
Q ss_conf 98509999
Q 002487 678 MLKCSPPP 685 (916)
Q Consensus 678 m~~~I~~~ 685 (916)
|++++..+
T Consensus 230 ~~~~l~~~ 237 (249)
T 2po1_A 230 QREALKEK 237 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999899
No 10
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=1.00 E-value=1 Score=349.68 Aligned_cols=218 Identities=20% Similarity=0.236 Sum_probs=194.9
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 99788999999854669994998997660599858969999999347210000268888771338999985279986555
Q 002487 446 GGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEV 525 (916)
Q Consensus 446 ~~~R~DGR~~~e~R~I~ie~g~l~~a~GSalv~~G~TqVl~~Vt~Gp~~~~~~~d~~~~~~~~~~~~~~~~f~P~s~ge~ 525 (916)
+|+|+|||+++|+|||.+++|+++++||||+|++|+|+|+|+| +||.+.....+ ...+++++|+|+|+
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V-~g~~~~~~~~~------~~~~~~~~~~~~P~----- 69 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAV-YGPKPGTRKGE------NPEKASIEVVWKPM----- 69 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEE-CCCEECCCTTS------CSSSCEEEEEEECS-----
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEE-ECCCCCCCCCC------CCCCEEEEEEECCC-----
T ss_conf 8857999997774785999898899985999998995999999-65767876657------87617999985787-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
Q ss_conf 67899982467999999997210168999998489999999824998530377689999994599855412089999972
Q 002487 526 GRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVL 605 (916)
Q Consensus 526 ~~~g~~~rrei~~~~lieraL~~vi~~~~~fp~tI~I~~~VLesdGs~~~Aav~aaslAL~dAGIPik~~vagvsvgli~ 605 (916)
.|.|++++++++++++|+|+++|+.+..++|+|+|+++||++|||+++|++||+++||+||||||+++++++++|++.
T Consensus 70 --~g~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~ 147 (246)
T 3hkm_A 70 --TGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLE 147 (246)
T ss_dssp --SSCCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECT
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE
T ss_conf --899974679999999999998647167874899999999953998799999999999986699977854899999987
Q ss_pred CCCCCCCCCCCEEECCCCHHHHHCCCCCEEEEECCCCEEEEEEEC---------------CCCCCCHHHHHHHHHHHHHH
Q ss_conf 687788999726606998144520995589993377625998210---------------03687999999999998732
Q 002487 606 DTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDI---------------KVGGITLPVMKKALQQAKDG 670 (916)
Q Consensus 606 ~~~~~~~~~~~~iL~Dp~~~Ed~~gd~df~Vagt~~git~lq~d~---------------k~ggis~~~l~eal~~A~~a 670 (916)
++ .+++||++.|++.++++++|+++.++++++|+++ +.++++.+++.+|+++|+++
T Consensus 148 ~g---------~~llDpt~~Ee~~~~~~~~va~~~~~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~ 218 (246)
T 3hkm_A 148 DG---------EVILDTNKAEEQQLKSFAHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAA 218 (246)
T ss_dssp TS---------CEEESCCHHHHTTCSEEEEEEEEC--------------------CCCEEEEECEEHHHHHHHHHHHHHH
T ss_pred CC---------EEEECCCHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99---------799898989994288059999948840788405653444554543665226884999999999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 1799999985099999
Q 002487 671 RRHILAEMLKCSPPPS 686 (916)
Q Consensus 671 ~~~Il~~m~~~I~~~r 686 (916)
+.+|++.|++++.+..
T Consensus 219 ~~~i~~~~~~~l~~~~ 234 (246)
T 3hkm_A 219 SSRISDFMRTTLQKQA 234 (246)
T ss_dssp HHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999997662
Done!