Citrus Sinensis ID: 002487

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910------
MLATSPGGLHIRPCYPHSSHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNKDRTKKSSGKAVSSQ
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEEEEEEccCEEEEEccccccccccEEEEECccEEEEEEEEEcccccccccccccEEccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEEEEEECcccccHHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEcccHHHHHcccEEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccccEEEEEEccccccccHHccccccccccccEEEEcccccccccccccccccccccccccHHHHHHcccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCEEEEEEcccccccccccccHHHHHHHHHHcccEEccccccEEEEEEccHHHHHHHHHHHHHHHcccccccEECccEEEEEEccCEEEEEccccccEEEEEccccccccccccccccccEEEEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
*************CY***********************************************************************PQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNG*SSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLS*************************************************************************************
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MLATSPGGLHIRPCYPHSSHFSLSARCKLSLSSNCPRFSTSQKSSKFRSLSLLLSRRKYSERFSVRASATGPEVSEPVLSDALPSFPQPVSVKIPFGDRQILVETGHMGRQASGAVTVTDGETIIYTSVCLADVPSEPSDFFPLNVNYQERFSAAGRTSGGFFKREGRTKDHEVLVCRLIDRPLRPTLIKGFYHETQILSWVLSYDGLHFPDALAVTAAGIAVALSEVPNSKVIAGVRVGLVGDKFIVNPTTQEMEDSQLDLLLAGSDDAILMIEGYCDFLSEEMLIQAVQVGQDAVREISNEVKALVEMCGKPKMLDTIKLPPPELYKHVEEIAGEELVKVLQIKNKIPRRKALSSLEEKVLTILSENGYVSKDETVGIVETIPDLLEDEDEDEEVVVDGEVDEGDVHIKPKSRKSTPMLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRFADGIRPISSRCGLLPRAHGSALFTRGETQSLAVITLGDKQMAQRIDNLESDDEVKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGTLAERALEPVLPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGVAMGMVLDTDEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMKKALQQAKDGRRHILAEMLKCSPPPSNSLSKHAPLIHIMKVKPEKINLIIGSGGKKVKSIIEETGVEAIDTEDDGTVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSNWLAKAEDVVKVGDLVDVKLIEVNDKGQLRLSRRALLPEADAENPPVKLPTGDPTKDAAASDKLVGSPKPKGSSSEDTVLPHKKVKVFKRPASPAKDRPYSNKDRTKKSSGKAVSSQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3'-end processing of mRNAs and 3'-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3'-5' degrading exonuclease.confidentQ69LE7
Polyribonucleotide nucleotidyltransferase 1, chloroplastic Involved in the metabolism of all major classes of plastid RNAs. Required for efficient 3'-end processing of mRNAs and 3'-end maturation of rRNA transcripts, but is not sufficient to mediate their degradation. Mediates tRNA degradation. May function as a poly(A) mRNA 3'-5' degrading exonuclease. May be required for plastid ribosome assembly and non-coding RNA biogenesis and accumulation. Seems not required for efficient translation.confidentQ8GZQ3

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.7.-.-Transferring phosphorous-containing groups.probable
2.7.7.-Nucleotidyltransferases.probable
2.7.7.8Polyribonucleotide nucleotidyltransferase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4AID, chain A
Confidence level:very confident
Coverage over the Query: 88-368,389-396,423-695,740-753
View the alignment between query and template
View the model in PyMOL
Template: 3BZC, chain A
Confidence level:probable
Coverage over the Query: 775-838
View the alignment between query and template
View the model in PyMOL
Template: 2NN6, chain A
Confidence level:probable
Coverage over the Query: 420-680
View the alignment between query and template
View the model in PyMOL