BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002490
(916 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 201/819 (24%), Positives = 356/819 (43%), Gaps = 100/819 (12%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F +S+RVKG+ FH PW+L +L+SG +++W+Y + + PVR F +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + H DYIR++ H P+++S SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
+ GH H+VMC +F+PK+ S LD+TV+VW +G S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173
Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
N L G +RGVN+ ++ P P +++ +DD +K+W +TK+
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSC- 220
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
V TL GHM+NVS +FH II+S SED ++++W+ + +T +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 301 --EMNLLAAGHDSGMIVFKLERERPAFAV--------SGDSLFYAKDRF---LRYYEFST 347
N +A+G D+G V L + P ++ SG A D F +R E
Sbjct: 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVE 340
Query: 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
Q + + + GS + P++L++SP V + D G Y +Y ++
Sbjct: 341 QDEPLSLQTKELGSVDV--FPQSLAHSPNGRFVTVVGD---GEYVIYT----------AL 385
Query: 408 QDAKKGLGGSAIFI---ARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTG 464
K G F+ N +A++D++ + A D +F +G
Sbjct: 386 AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF---SG 442
Query: 465 NLL-CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHA--------III 515
LL +++ V FD ++ + K V+WS++ E V +++ ++ ++
Sbjct: 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN-AKDVIWSDNGELVMIVNTNSNGDEASGYTLL 501
Query: 516 ASKKLVHQCTLHETI------------------RVKSGAWDDNGVFIYTT-LNHIKYCLP 556
+K + + I + SG W + VFI+TT N + Y +
Sbjct: 502 FNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGD-VFIFTTATNRLNYFVG 560
Query: 557 NGDSGIIR-TLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMS 615
+ T ++ + N ++ DR+ I F+ LR + +
Sbjct: 561 GKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIE 620
Query: 616 MIRNSQLCGQAMIA---YLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDE 672
+ + ++ +L+ + + E AL+ D+ +F LAL+ G + +A +
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESA 680
Query: 673 KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVM 732
+ W LG +L++ N + A+ + E L L+ N + L + K AE
Sbjct: 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFN 740
Query: 733 GQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQD 771
F+ GD++ +L + A S +GL D
Sbjct: 741 LAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/529 (27%), Positives = 251/529 (47%), Gaps = 68/529 (12%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F +S+RVKG+ FH PW+L +L+SG ++LW+Y + + PVR F +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + H DYIR++ H P+++S SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
+ GH H+VMC +F+PK+ S LD+TV+VW +G S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173
Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
N L G +RGVN+ ++ P P +++ +DD +K+W +TK+
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSC- 220
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
V TL GHM+NVS +FH II+S SED ++++W+ + +T +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 301 --EMNLLAAGHDSGMIVFKLERERPAFAV--------SGDSLFYAKDRF---LRYYEFST 347
N +A+G D+G V L + P ++ SG A D F +R E
Sbjct: 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVE 340
Query: 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
Q + + + GS + P++L++SP V + D G Y +Y ++
Sbjct: 341 QDEPLSLQTKELGSVDV--FPQSLAHSPNGRFVTVVGD---GEYVIYT----------AL 385
Query: 408 QDAKKGLGGSAIFI---ARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTG 464
K G F+ N +A++D++ + A D +F +G
Sbjct: 386 AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF---SG 442
Query: 465 NLL-CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHA 512
LL +++ V FD ++ + K V+WS++ E V +++ ++
Sbjct: 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN-AKDVIWSDNGELVMIVNTNS 490
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 34/320 (10%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F +S+RVKG+ FH PW+L +L+SG ++LW+Y + + PVR F +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + H DYIR++ H P+++S SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
+ GH H+VMC +F+PK+ S LD+TV+VW +G S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173
Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
N L G +RGVN+ ++ P P +++ +DD +K+W +TK+
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKS-C 220
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
V TL GHM+NVS +FH II+S SED ++++W+ + +T +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 301 --EMNLLAAGHDSGMIVFKL 318
N +A+G D+G V L
Sbjct: 281 TGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 34/320 (10%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F +S+RVKG+ FH PW+L +L+SG ++LW+Y + + PVR F +
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
+ G DD++I+V+NY + H DYIR++ H P+++S SDD T+++WNW++
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
+ GH H+VMC +F+PK+ S LD+TV+VW +G S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173
Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
N L G +RGVN+ ++ P P +++ +DD +K+W +TK+
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKS-C 220
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
V TL GHM+NVS +FH II+S SED ++++W+ + +T +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Query: 301 --EMNLLAAGHDSGMIVFKL 318
N +A+G D+G V L
Sbjct: 281 TGRKNYIASGFDNGFTVLSL 300
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 153/330 (46%), Gaps = 40/330 (12%)
Query: 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ 63
+ E S+ V+G++F I ++ ++LW+ R G L+ H V GV F
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 64 PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
S DD +K+WN + + L TL GH +R V F + I SASDD+T+++WN +
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD-IGALRK------------- 169
+ + LTGH+ V +F P + SAS D+TV++W+ G L +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 187
Query: 170 -----KTVSPADD--ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222
+T++ A D ++L N L L GH V AF P I S
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQLL--------QTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 223 ADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282
+DD+ VKLW N + TL GH ++V+ V F I S S+DK++++W+ R G
Sbjct: 240 SDDKTVKLWNRNGQL---LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN---RNG 293
Query: 283 --VQTFRREHDRFWILASHPEMNLLAAGHD 310
+QT W +A P+ +A+ D
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 39/309 (12%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
+L S+ V G++F I ++ ++LW+ R G + H V GV F
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFS 353
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
S DD +K+WN + + L TL GH +R V F + I SASDD+T+++W
Sbjct: 354 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
N ++ + LTGH+ V +F P + + SAS D+TV++W+
Sbjct: 413 N-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN----------------- 454
Query: 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
N L L GH V AF P I S +DD+ VKLW N
Sbjct: 455 ---RNGQLL--------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--- 500
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILAS 298
+ TL GH ++V V F I S S+DK++++W+ R G +QT W +A
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAF 557
Query: 299 HPEMNLLAA 307
P+ +A+
Sbjct: 558 SPDGQTIAS 566
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 147/325 (45%), Gaps = 24/325 (7%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
+L S+ V+G++F I ++ ++LW+ R G L+ H V GV F
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
S DD +K+WN + + L TL GH + V F + I SASDD+T+++W
Sbjct: 272 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
N ++ + LTGH+ V +F P + SAS D+TV++W+ +T++ +R
Sbjct: 331 N-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389
Query: 181 LSQMNTD----LFGGVDAVVK---------YVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227
+ D D VK L GH V AF P I S +DD+
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQT 285
VKLW N + TL GH ++V V F I S S+DK++++W+ R G +QT
Sbjct: 450 VKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQT 503
Query: 286 FRREHDRFWILASHPEMNLLAAGHD 310
+A P+ +A+ D
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASD 528
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 132/289 (45%), Gaps = 39/289 (13%)
Query: 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE 104
+R + H VRGV F S DD +K+WN + + L TL GH + V F +
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD- 163
I SASDD+T+++WN ++ + LTGH+ V +F P + SAS D+TV++W+
Sbjct: 69 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 164 IGALRK------------------KTVSPADD--ILRLSQMNTDLFGGVDAVVKYVLEGH 203
G L + +T++ A D ++L N L L GH
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--------QTLTGH 179
Query: 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDII 263
V AF P I S +DD+ VKLW N + TL GH ++V V F I
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTI 236
Query: 264 VSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILASHPEMNLLAAGHD 310
S S+DK++++W+ R G +QT +A P+ +A+ D
Sbjct: 237 ASASDDKTVKLWN---RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD 282
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILA 297
E + L H ++V V F I S S+DK++++W+ R G +QT W +A
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVA 64
Query: 298 SHPEMNLLAAGHD 310
P+ +A+ D
Sbjct: 65 FSPDGQTIASASD 77
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 177
Score = 122 bits (305), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/175 (40%), Positives = 97/175 (55%), Gaps = 5/175 (2%)
Query: 640 ALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT 699
AL FV+D RF+LALE GN+ A+ AK++++ W RL EAL QGNA + E YQ
Sbjct: 1 ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQ 60
Query: 700 KNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPL 759
+F++LSFLYL+TG+++KLSKM IA+ + D N Y KER I G LPL
Sbjct: 61 HSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL 120
Query: 760 AYITASVHGLQDVAERL--AAELGDNVPSVPEGKAPSLLMPPSPVVCS--GDWPL 810
AY A +G + A AE+ + ++P+ S + PV+ WPL
Sbjct: 121 AYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNFV-QRPVISKPLEKWPL 174
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 24/290 (8%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGV--------DAVVKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ +K +++ + V++ F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG---HDSGMIVFK 317
+ +W++ + VQ + D A HP N++A+ +D + +FK
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 31/247 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 211 LAATLDNTLKLWDYSKGK-------------------------CLKTYTGHKNEKYCIFA 245
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 268 EDKSIRV 274
DK+I++
Sbjct: 304 NDKTIKL 310
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 112
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 268
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KL++
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLFK 312
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K + T+ GH +S V
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDV 74
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 21/277 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGV--------DAVVKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ +K +++ + V++ F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA 307
+ +W++ + VQ + D A HP N++A+
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 150
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 211 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 245
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 268 EDKSIRVW 275
DK+I+++
Sbjct: 304 NDKTIKLY 311
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 112
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T++++
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 268
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KL++
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLYK 312
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K + T+ GH +S V
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDV 74
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGV--------DAVVKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ +K +++ + V++ F
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 284 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 112 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 171
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 231
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 232 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 266
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 325 NDKTIKLW 332
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
NY + FTL GH + +V+F W+ S+S D+ I+IW ++GH +
Sbjct: 36 NYALK---FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
++ +L+VSAS D+T+++WD+ + + L+
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------CLK------------------ 125
Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
L+GH V F+P LIVSG+ D V++W + K + TL H + VS V F+
Sbjct: 126 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNR 183
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+IVS+S D R+WD ++T
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 285 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 289
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRMN 234
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+ +
Sbjct: 290 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWKSD 335
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 95
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI-GALR 168
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 169 KKTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 107/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K CL TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD +++WD + + Y +++ +A
Sbjct: 211 LAATLDNDLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 245
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 304 NDKTIKLW 311
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
NY + +FTL GH + +V+F W+ S+S D+ I+IW ++GH +
Sbjct: 15 NYAL---MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
++ +L+VSAS D+T+++WD+ + + L+
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------CLK------------------ 104
Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
L+GH V F+P LIVSG+ D V++W + + TL H + VS V F+
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC--LKTLPAHSDPVSAVHFNR 162
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+IVS+S D R+WD ++T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D +++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN-------------- 268
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 312
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWS 77
Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 282 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 169
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 229
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 230 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 264
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 323 NDKTIKLW 330
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
NY + FTL GH + +V+F W+ S+S D+ I+IW ++GH +
Sbjct: 34 NYALK---FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
++ +L+VSAS D+T+++WD+ + + L+
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------CLK------------------ 123
Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
L+GH V F+P LIVSG+ D V++W + K + TL H + VS V F+
Sbjct: 124 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNR 181
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+IVS+S D R+WD ++T
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 287
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 288 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 331
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 93
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 214 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 248
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 307 NDKTIKLW 314
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 115
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 174 SYDGLCRIWDTASGQCLKTL 193
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 271
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 272 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 77
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI-GALR 168
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 169 KKTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K CL TL
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 211 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 245
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 304 NDKTIKLW 311
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
NY + +FTL GH + +V+F W+ S+S D+ I+IW ++GH +
Sbjct: 15 NYAL---MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
++ +L+VSAS D+T+++WD+ + + L+
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------CLK------------------ 104
Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
L+GH V F+P LIVSG+ D V++W + + TL H + VS V F+
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC--LKTLPAHSDPVSAVHFNR 162
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+IVS+S D R+WD ++T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN-------------- 268
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 312
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWS 77
Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 214 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 248
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 307 NDKTIKLW 314
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
NY + FTL GH + +V+F W+ S+S D+ I+IW ++GH +
Sbjct: 18 NYALK---FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
++ +L+VSAS D+T+++WD+ + + L+
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------CLK------------------ 107
Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
L+GH V F+P LIVSG+ D V++W + K + TL H + VS V F+
Sbjct: 108 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNR 165
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+IVS+S D R+WD ++T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 271
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 272 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 77
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 277 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 105 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 164
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 165 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 224
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 225 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 259
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 318 NDKTIKLW 325
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 126
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 184
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 185 SYDGLCRIWDTASGQCLKTL 204
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 282
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 283 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 326
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 88
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 214 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 248
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 307 NDKTIKLW 314
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 115
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 174 SYDGLCRIWDTASGQCLKTL 193
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 271
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 272 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 77
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGV--------DAVVKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ +K +++ + V++ F
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 259 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 87 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 146
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 206
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 207 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 241
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 300 NDKTIKLW 307
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 108
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 166
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 167 SYDGLCRIWDTASGQCLKTL 186
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 200 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 259
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 260 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 264
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 265 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 308
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 70
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGV--------DAVVKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ +K +++ + V++ F
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 265 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 93 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 152
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 153 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 212
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 213 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 247
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 306 NDKTIKLW 313
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 114
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 172
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 173 SYDGLCRIWDTASGQCLKTL 192
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 266
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 267 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 270
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 271 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 314
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 76
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 256 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 84 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 143
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 203
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 204 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 238
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 297 NDKTIKLW 304
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 105
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 163
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 164 SYDGLCRIWDTASGQCLKTL 183
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 197 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 256
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 257 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 261
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 262 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 305
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 67
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 208 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 242
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 301 NDKTIKLW 308
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 109
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 168 SYDGLCRIWDTASGQCLKTL 187
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 265
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 266 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 309
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 71
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 208 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 242
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 301 NDKTIKLW 308
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 109
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 168 SYDGLCRIWDTASGQCLKTL 187
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 265
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 266 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 309
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 71
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 21/278 (7%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H V V F + S D IK+W + T+ GH I V + + +V
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SASDD+T++IW+ S C+ L GH++YV C +F+P+ +L+VS S D++VR+WD+ +
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 170 -KTVSPADDILRLSQMNTD-------LFGGVDAV--------VKYVLEGHDRGVNWAAFH 213
KT+ D + N D + G+ + +K +++ + V++ F
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
P I++ D +KLW ++ K + T GH N C+ + IVS SED
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ +W++ + VQ + D A HP N++A+
Sbjct: 261 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+++WD G + H V +F+ L VSG D +++W+ K +CL TL
Sbjct: 89 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 148
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLV 150
H D + V F+ + IVS+S D RIW+ S C+ L N V F P +
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 208
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
++A+LD T+++WD + + Y +++ +A
Sbjct: 209 LAATLDNTLKLWD-------------------------YSKGKCLKTYTGHKNEKYCIFA 243
Query: 211 AFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-- 267
F T IVSG++D V +W + + V L+GH + V H ++II S +
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 268 EDKSIRVW 275
DK+I++W
Sbjct: 302 NDKTIKLW 309
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ S+S D+ I+IW ++GH + ++
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 110
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 168
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 169 SYDGLCRIWDTASGQCLKTL 188
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHF 59
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQT 116
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 261
Query: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
+ IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 262 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
L + SN V +F+ + I++ +++WD + G + H PV VHF+
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRI 119
+ L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 120 WNWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN------------- 266
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 267 --LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 310
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + S + D+ +K+W + K T+ GH +S V
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDV 72
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 31/299 (10%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
V + F W+ AS +I++W G H + V + L VS D
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
D +K+W+ +CL TL GH +Y+ F+ + IVS S D+++RIW+ ++ C+ L
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGG 191
H+ V F+ L+VS+S D R+WD + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ----------------------- 185
Query: 192 VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251
+K +++ + V++ F P I++ D +KLW ++ K + T GH N
Sbjct: 186 ---CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEK 240
Query: 252 SCVMFH---AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA 307
C+ + IVS SED + +W++ + VQ + D A HP N++A+
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 29/200 (14%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
FTL GH + +V+F W+ ++S D+ I+IW ++GH + ++
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
+L+VSAS D+T+++WD+ + + L+ L+GH
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGK---------CLK------------------TLKGHSNY 112
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V F+P LIVSG+ D V++W + K + TL H + VS V F+ +IVS+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 267 SEDKSIRVWDVTKRTGVQTF 286
S D R+WD ++T
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
L S+ V + F+ I++S + G+ ++WD G + D+ + PV V F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
+ ++ D +K+W+Y +CL T GH + Y F WIVS S+D +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
IWN Q++ + L GH V+ + HP E+++ SA+L D+T+++W
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + SN V +F+ + I++ +++WD + G + H PV VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
L VS D ++W+ +CL TL+ + + V+F +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
++ C+ TGH + Y + A+F +VS S D V +W+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 268
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
L+ ++ L G D V+ A HPT +I S A +D+ +KLW+
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 312
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
+K+ L GH + V+ F P + + + D+ +K+W + K T+ GH +S V
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF--EKTISGHKLGISDV 74
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
+ + +++VS S+DK++++WDV+ ++T + + + +P+ NL+ +G
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 38/279 (13%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H PV V FH + VS +D IKVW+Y+ TL GH D ++ + F H +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI--GAL 167
S S D TI++W++Q CI + GH+H V S P D +VSAS D+T+++W++ G
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 168 RK---------KTVSPADDILRLSQMNTDLFGGVDAV----VKYVLEGHDRGVNWAAFHP 214
K + V P D ++ + D V V K L H V ++ P
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 215 TL--------------------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
P ++SG+ D+ +K+W ++ + TL GH N V V
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGV 344
Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293
+FH+ I+S ++DK++RVWD + ++T H+ F
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHF 382
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 15/272 (5%)
Query: 9 SNRVKGLSF-HSKRPWILASLHSGV-IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF 66
++ V+ +SF HS + +LAS + + I+LWD++ I HD V V +
Sbjct: 150 TDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 67 VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
VS D IK+W + C+ T GH +++R V+ + + I S S+DQT+R+W ++
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267
Query: 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186
C + L H H V C S+ P+ +S+ + G+ KK+ P +L S+ T
Sbjct: 268 CKAELREHRHVVECISWAPESSY---SSISEAT-----GSETKKSGKPGPFLLSGSRDKT 319
Query: 187 -DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245
++ + L GHD V FH I+S ADD+ +++W + + TL
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLN 377
Query: 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277
H + V+ + FH +V+ S D++++VW+
Sbjct: 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 35/261 (13%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
+ L GH + V FH + +VSAS+D TI++W++++ L GH V SF
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
L+ S S D T+++WD F G + + + GHD
Sbjct: 162 GKLLASCSADMTIKLWD-------------------------FQGFECI--RTMHGHDHN 194
Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
V+ + P IVS + D+ +K+W + + V T GH V V + +I S
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQ--TGYCVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 267 SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFA 326
S D+++RVW V + R ++ PE + + +G K + P F
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FL 311
Query: 327 VSGDSLFYAKDRFLRYYEFST 347
+SG ++D+ ++ ++ ST
Sbjct: 312 LSG-----SRDKTIKMWDVST 327
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256
KY L GH V FHP ++VS ++D +K+W ET +E TL+GH ++V + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFE-RTLKGHTDSVQDISF 158
Query: 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
++ S S D +I++WD G + R H
Sbjct: 159 DHSGKLLASCSADMTIKLWDF---QGFECIRTMH 189
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 98/221 (44%), Gaps = 37/221 (16%)
Query: 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
VSG DD +KVW+ +CL TL+GH + + Q I+S S D+T+++WN ++
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETG 189
Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
CI L GH V C H K VVS S D T+RVWDI Q
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI---------------ETGQCL 232
Query: 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245
L G V AV +G +VSGA D VK+W + TL+
Sbjct: 233 HVLMGHVAAVRCVQYDGRR--------------VVSGAYDFMVKVWDPETETC--LHTLQ 276
Query: 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
GH N V + F +VS S D SIRVWDV + T
Sbjct: 277 GHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTL 315
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 48/291 (16%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
+ L F R I++ +++W G + H G V + + +SG
Sbjct: 122 ITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST 177
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
D +KVWN + C+ TL GH +R + H + +VS S D T+R+W+ ++ C+ VL
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVL 235
Query: 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD---- 187
GH V C + + VVS + D V+VWD + L Q +T+
Sbjct: 236 MGHVAAVRCVQYDGRR--VVSGAYDFMVKVWD---------PETETCLHTLQGHTNRVYS 284
Query: 188 --------LFGGVDAVVK----------YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
+ G +D ++ + L GH + ++VSG D VK
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVK 342
Query: 230 LWRMNETKAWEVDTLRG---HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277
+W + + + TL+G H + V+C+ F+ ++ ++++S+D ++++WD+
Sbjct: 343 IWDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 54/335 (16%)
Query: 89 LLGHLDYIRT-VQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
L GH D++ T +QF IVS SDD T+++W+ + C+ L GH V S ++
Sbjct: 114 LKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRD 169
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
++++S S D+T++VW+ + I + L GH V
Sbjct: 170 NIIISGSTDRTLKVWN--------AETGECI-------------------HTLYGHTSTV 202
Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
H +VSG+ D +++W + + V L GH+ V CV + ++ +VS +
Sbjct: 203 RCMHLHE--KRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRR--VVSGA 256
Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327
D ++VWD T + T + +R + L +++++ D+ + V+ +E +
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Query: 328 SG-----------DSLFYA--KDRFLRYYEFSTQKDTQVI--PIRRPGSTSLNQSPRTLS 372
+G D++ + D ++ ++ T + Q + P + + + Q +
Sbjct: 316 TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375
Query: 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
+ +++ + D+ G + ++ +S G G V
Sbjct: 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
L + +NRV L F + SL + I++WD G I H G+
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHV-VSGSLDTS-IRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Query: 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLG---HLDYIRTVQFHHEYPWIVSASDDQTIR 118
+ + VSG D +K+W+ K +CL TL G H + +QF+ + ++++SDD T++
Sbjct: 330 N--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGTVK 385
Query: 119 IWN 121
+W+
Sbjct: 386 LWD 388
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
VL+GHD V IVSG+DD +K+W K + TL GH V
Sbjct: 113 VLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQM-- 167
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318
+ +II+S S D++++VW+ + T + H E +++ D+ + V+ +
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDI 226
Query: 319 E 319
E
Sbjct: 227 E 227
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 24/283 (8%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF-H 60
L + + V +F S +I +++WD G L+ +DEH V HF +
Sbjct: 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709
Query: 61 KSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
KS L + +G +D+ +K+W+ C T+ GH + + +F + + S S D T+R+
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 120 WNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W+ +S R I+V +S P ED+ V V+ A K + A
Sbjct: 770 WDVRSANERKSINV-----KRFFLSSEDPPEDVEV------IVKCCSWSADGDKIIVAAK 818
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236
+ + L ++T ++ + GH + + F P L V V+LW ++
Sbjct: 819 NKVLLFDIHT------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872
Query: 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279
+V RGH++ V VMF ++ S+D++IRVW+ K
Sbjct: 873 --LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
H D + F + I S D+T++++ ++ + + H V+C +F + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211
+ S D+ V++WD + K V D+ H VN
Sbjct: 674 TCSADKKVKIWD--SATGKLVHTYDE-------------------------HSEQVNCCH 706
Query: 212 F--HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269
F L+ +G++D +KLW +N+ + +T+ GH N+V+ F +++ S S D
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Query: 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
++R+WDV R+ + RF++ + P
Sbjct: 765 GTLRLWDV--RSANERKSINVKRFFLSSEDP 793
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 19/183 (10%)
Query: 69 GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
G +D IK+ +R + +GH +R +QF + ++S+S+D I++WNWQ+ +
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Query: 129 SVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKK---------TVSPAD 176
L H V F +D ++S S D TV+VW++ G + + + + +
Sbjct: 1039 -FLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Query: 177 DILRLSQMNTDLFGGV---DAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232
D + S + D + D + + L+GH+ V +AF L+ +G D+ ++++W
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Query: 233 MNE 235
+++
Sbjct: 1156 VSD 1158
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 36/279 (12%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
VK S+ + I+ + + V+ + G L + H ++ F L V
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
Y +++WN + GHL ++ V F + ++ASDDQTIR+W + C
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVC---- 915
Query: 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGG 191
K +V L Q + D+ +T+ A D +R Q L G
Sbjct: 916 --------------KNSAIV---LKQEI---DVVFQENETMVLAVDNIRGLQ----LIAG 951
Query: 192 VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251
+ Y+ E V+ P L + G +D +K+ + + + GH V
Sbjct: 952 KTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAV 1006
Query: 252 SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
+ F A ++S+SED I+VW+ +TG F + H
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNW--QTGDYVFLQAH 1043
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
V+ + F + +++S VIQ+W+++ G + H V+ + L +S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRL-LSWSF 1063
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
D +KVWN R H + + + S S D+T +IW++ + + L
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Query: 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
GHN V C++F L+ + + +R+W++
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90
G +++W+ G + F H G V F S D K+W++ + L L
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124
Query: 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWN------WQSRTCISVLTG---HNHYVMCA 141
GH +R F + + + D+ IRIWN S ISV G H +V
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 142 SFHPKEDLVVSA 153
F P +VSA
Sbjct: 1185 CFSPDSKTLVSA 1196
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256
+ V+ H V A F I S D+ +++++ ET +D ++ H + V C F
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD-IKAHEDEVLCCAF 665
Query: 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+ I + S DK +++WD V T+
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTY 695
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 24/283 (8%)
Query: 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF-H 60
L + + V +F S +I +++WD G L+ +DEH V HF +
Sbjct: 657 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 716
Query: 61 KSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
KS L + +G +D+ +K+W+ C T+ GH + + +F + + S S D T+R+
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 120 WNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
W+ +S R I+V +S P ED+ V V+ A K + A
Sbjct: 777 WDVRSANERKSINV-----KRFFLSSEDPPEDVEV------IVKCCSWSADGDKIIVAAK 825
Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236
+ + L ++T ++ + GH + + F P L V V+LW ++
Sbjct: 826 NKVLLFDIHT------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 879
Query: 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279
+V RGH++ V VMF ++ S+D++IRVW+ K
Sbjct: 880 --LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
H D + F + I S D+T++++ ++ + + H V+C +F + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211
+ S D+ V++WD + K V D+ H VN
Sbjct: 681 TCSADKKVKIWD--SATGKLVHTYDE-------------------------HSEQVNCCH 713
Query: 212 F--HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269
F L+ +G++D +KLW +N+ + +T+ GH N+V+ F +++ S S D
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Query: 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
++R+WDV R+ + RF++ + P
Sbjct: 772 GTLRLWDV--RSANERKSINVKRFFLSSEDP 800
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 19/183 (10%)
Query: 69 GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
G +D IK+ +R + +GH +R +QF + ++S+S+D I++WNWQ+ +
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Query: 129 SVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKK---------TVSPAD 176
L H V F +D ++S S D TV+VW++ G + + + + +
Sbjct: 1046 -FLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Query: 177 DILRLSQMNTDLFGGV---DAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232
D + S + D + D + + L+GH+ V +AF L+ +G D+ ++++W
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Query: 233 MNE 235
+++
Sbjct: 1163 VSD 1165
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 36/279 (12%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
VK S+ + I+ + + V+ + G L + H ++ F L V
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
Y +++WN + GHL ++ V F + ++ASDDQTIR+W + C
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVC---- 922
Query: 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGG 191
K +V L Q + D+ +T+ A D +R Q L G
Sbjct: 923 --------------KNSAIV---LKQEI---DVVFQENETMVLAVDNIRGLQ----LIAG 958
Query: 192 VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251
+ Y+ E V+ P L + G +D +K+ + + + GH V
Sbjct: 959 KTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAV 1013
Query: 252 SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
+ F A ++S+SED I+VW+ +TG F + H
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNW--QTGDYVFLQAH 1050
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
V+ + F + +++S VIQ+W+++ G + H V+ + L +S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRL-LSWSF 1070
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
D +KVWN R H + + + S S D+T +IW++ + + L
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
GHN V C++F L+ + + +R+W++
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90
G +++W+ G + F H G V F S D K+W++ + L L
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1131
Query: 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWN------WQSRTCISVLTG---HNHYVMCA 141
GH +R F + + + D+ IRIWN S ISV G H +V
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 142 SFHPKEDLVVSA 153
F P +VSA
Sbjct: 1192 CFSPDSKTLVSA 1203
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256
+ V+ H V A F I S D+ +++++ ET +D ++ H + V C F
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD-IKAHEDEVLCCAF 672
Query: 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
+ I + S DK +++WD V T+
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTY 702
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 24/186 (12%)
Query: 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI--G 165
IVS D TI+IW+ + C +LTGH V+C + E ++++ S D TVRVWD+ G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203
Query: 166 ALRKKTVSPADDILRLSQMNT--------------DLFGGVDAVVKYVLEGHDRGVNWAA 211
+ + + +L L N D+ D ++ VL GH VN
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271
F IVS + DR +K+W N + V TL GH ++C+ + + ++VS S D +
Sbjct: 264 FDD--KYIVSASGDRTIKVW--NTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNT 317
Query: 272 IRVWDV 277
IR+WD+
Sbjct: 318 IRLWDI 323
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 141/327 (43%), Gaps = 64/327 (19%)
Query: 2 LTKFETKSNRVKG---LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVH 58
L + +S KG L + ++ I++ L I++WD H G V +
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 180
Query: 59 FHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIR 118
+ + + ++G D ++VW+ L TL+ H + + ++F++ +V+ S D++I
Sbjct: 181 Y--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIA 236
Query: 119 IWNWQSRTCIS---VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPA 175
+W+ S T I+ VL GH V F K +VSAS D+T++VW+
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTC-------- 286
Query: 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235
+ +R L GH RG+ A L+VSG+ D ++LW +
Sbjct: 287 -EFVR------------------TLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-------------RTG 282
V L GH V C+ F K+ IVS + D I+VWD+ RT
Sbjct: 326 GACLRV--LEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381
Query: 283 VQ----TFRREHDRFWILASHPEMNLL 305
V+ FR + D F I++S + +L
Sbjct: 382 VEHSGRVFRLQFDEFQIVSSSHDDTIL 408
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 23 WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82
+I+++ I++W+ + + H + + + L VSG D I++W+ +
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIEC 325
Query: 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW---------QSRTCISVLTG 133
CL L GH + +R ++F ++ IVS + D I++W+ C+ L
Sbjct: 326 GACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 383
Query: 134 HNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
H+ V F E +VS+S D T+ +WD
Sbjct: 384 HSGRVFRLQF--DEFQIVSSSHDDTILIWD 411
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F+ S+ V+ + + + L++ ++LWD G RF H V V K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
+ +SG D IKVW K +CL TLLGH D++ V+ + I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
WN + GHN + + P L+ SA D + +W++ A + T+S D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 178 ILRLS 182
+ L+
Sbjct: 240 VFSLA 244
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)
Query: 47 FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
+ H+G V + QP L +S D + W + K + + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
+ + +SAS D+T+R+W+ + GH VM K +++S S D+T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
VW I T+ +D + ++ + D+V I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170
Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
S +D+ VK W +N+ + E D + GH +N++ + +I S +D I +W++ +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
+ T + + F LA P LAA +G+ VF L+ + RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)
Query: 37 DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
D + G + F H V+ +S D +++W+ +GH +
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
+V + I+S S D+TI++W + + C++ L GHN +V P E +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
+SA D+ V+ W++ Q+ D GH+ +N
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
P LI S D ++ LW + KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F+ S+ V+ + + + L++ ++LWD G RF H V V K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
+ +SG D IKVW K +CL TLLGH D++ V+ + I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
WN + GHN + + P L+ SA D + +W++ A + T+S D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 178 ILRLS 182
+ L+
Sbjct: 240 VFSLA 244
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)
Query: 47 FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
+ H+G V + QP L +S D + W + K + + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
+ + +SAS D+T+R+W+ + GH VM K +++S S D+T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
VW I T+ +D + ++ + D+V I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170
Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
S +D+ VK W +N+ + E D + GH +N++ + +I S +D I +W++ +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
+ T + + F LA P LAA +G+ VF L+ + RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)
Query: 37 DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
D + G + F H V+ +S D +++W+ +GH +
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
+V + I+S S D+TI++W + + C++ L GHN +V P E +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
+SA D+ V+ W++ Q+ D GH+ +N
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
P LI S D ++ LW + KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F+ S+ V+ + + + L++ ++LWD G RF H V V K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
+ +SG D IKVW K +CL TLLGH D++ V+ + I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
WN + GHN + + P L+ SA D + +W++ A + T+S D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 178 ILRLS 182
+ L+
Sbjct: 240 VFSLA 244
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)
Query: 47 FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
+ H+G V + QP L +S D + W + K + + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
+ + +SAS D+T+R+W+ + GH VM K +++S S D+T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
VW I T+ +D + ++ + D+V I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170
Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
S +D+ VK W +N+ + E D + GH +N++ + +I S +D I +W++ +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
+ T + + F LA P LAA +G+ VF L+ + RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)
Query: 37 DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
D + G + F H V+ +S D +++W+ +GH +
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
+V + I+S S D+TI++W + + C++ L GHN +V P E +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
+SA D+ V+ W++ Q+ D GH+ +N
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
P LI S D ++ LW + KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F+ S+ V+ + + + L++ ++LWD G RF H V V K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
+ +SG D IKVW K +CL TLLGH D++ V+ + I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
WN + GHN + + P L+ SA D + +W++ A + T+S D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Query: 178 ILRLS 182
+ L+
Sbjct: 240 VFSLA 244
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)
Query: 47 FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
+ H+G V + QP L +S D + W + K + + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
+ + +SAS D+T+R+W+ + GH VM K +++S S D+T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
VW I T+ +D + ++ + D+V I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170
Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
S +D+ VK W +N+ + E D + GH +N++ + +I S +D I +W++ +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
+ T + + F LA P LAA +G+ VF L+ + RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)
Query: 37 DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
D + G + F H V+ +S D +++W+ +GH +
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
+V + I+S S D+TI++W + + C++ L GHN +V P E +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
+SA D+ V+ W++ Q+ D GH+ +N
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
P LI S D ++ LW + KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F+ S+ V+ + + + L++ ++LWD G RF H V V K
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
+ +SG D IKVW K +CL TLLGH D++ V+ + I+SA +D+ ++
Sbjct: 115 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
WN + GHN + + P L+ SA D + +W++ A + T+S D+
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
Query: 178 ILRLS 182
+ L+
Sbjct: 234 VFSLA 238
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)
Query: 47 FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
+ H+G V + QP L +S D + W + K + + GH ++
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
+ + +SAS D+T+R+W+ + GH VM K +++S S D+T++
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
VW I T+ +D + ++ + D+V I+
Sbjct: 127 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 164
Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
S +D+ VK W +N+ + E D + GH +N++ + +I S +D I +W++ +
Sbjct: 165 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
+ T + + F LA P LAA +G+ VF L+ + RP FA
Sbjct: 223 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 273
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)
Query: 37 DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
D + G + F H V+ +S D +++W+ +GH +
Sbjct: 45 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 104
Query: 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
+V + I+S S D+TI++W + + C++ L GHN +V P E +
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
+SA D+ V+ W++ Q+ D GH+ +N
Sbjct: 164 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 196
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
P LI S D ++ LW + KA
Sbjct: 197 TASPDGTLIASAGKDGEIMLWNLAAKKA 224
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 7/167 (4%)
Query: 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS 68
S+ V+ + S + L+ G ++LWD G RF H V V F VS
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 69 GGDDYKIKVWNYKMHRCLFTLL----GHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNW 122
D IK+WN + C +T+ GH D++ V+F P IVSAS D+T+++WN
Sbjct: 490 ASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
+ S L GH YV + P L S D V +WD+ +K
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 41/274 (14%)
Query: 24 ILASLHSGVIQLW-----DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
I+++ I LW D G R H V V +SG D ++++W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHN 135
+ +GH + +V F + IVSAS D+TI++WN ++ GH
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 136 HYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVD 193
+V C F P + +VSAS D+TV+VW++ +
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------------------------- 552
Query: 194 AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253
++ L GH V+ A P L SG D V LW + E K ++ +L N+V
Sbjct: 553 --LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEA--NSVIH 606
Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287
+ + + + + I++WD+ ++ V+ +
Sbjct: 607 ALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 31/236 (13%)
Query: 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
L GH ++ V + + +S S D +R+W+ + GH V+ +F
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208
+VSAS D+T+++W+ K T+S GG EGH V+
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISE---------------GG---------EGHRDWVS 521
Query: 209 WAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
F P P IVS + D+ VK+W ++ K TL GH VS V + S
Sbjct: 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 267 SEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAAGHDSGMIVFKLERE 321
+D + +WD+ + G + + E + L P L A + G+ ++ LE +
Sbjct: 580 GKDGVVLLWDLAE--GKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 148 DLVVSASLDQTVRVWDI-------GALRKKTVSPA---DDILRLSQMNTDLFGGVD---- 193
D++VSAS D+++ +W + G +++ + +D++ S L G D
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 194 ------AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR-MNETKAWEVDTLRG 246
V GH + V AF IVS + DR +KLW + E K + G
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515
Query: 247 HMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304
H + VSCV F Q IVS S DK+++VW+++ T +A P+ +L
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 305 LAAGHDSGMI-VFKLERERPAFAVSGDSLFYA 335
A+G G++ ++ L + +++ +S+ +A
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 243 TLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTK 279
T+R H + V+ + DIIVS S DKSI +W +TK
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTK 414
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 8/185 (4%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
F+ S+ V+ + + + L++ ++LWD G RF H V V K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
+SG D IKVW K +CL TLLGH D++ V+ + I+SA +D+ ++
Sbjct: 121 XIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
WN + GHN + + P L+ SA D + +W++ A + T+S D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE 239
Query: 178 ILRLS 182
+ L+
Sbjct: 240 VFSLA 244
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 37/292 (12%)
Query: 47 FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
+ H+G V + QP L +S D + W + K + + GH ++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
+ + +SAS D+T+R+W+ + GH V K ++S S D+T++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
VW I T+ +D + ++ + D+V I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170
Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
S +D+ VK W +N+ + E D + GH +N++ + +I S +D I +W++ +
Sbjct: 171 SAGNDKXVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
T + + F LA P LAA +G+ VF L+ + RP FA
Sbjct: 229 KAXYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)
Query: 37 DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
D + G + F H V+ +S D +++W+ +GH +
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110
Query: 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
+V + I+S S D+TI++W + + C++ L GHN +V P E +
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
+SA D+ V+ W++ Q+ D GH+ +N
Sbjct: 170 ISAGNDKXVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
P LI S D ++ LW + KA
Sbjct: 203 TASPDGTLIASAGKDGEIXLWNLAAKKA 230
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 43/270 (15%)
Query: 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154
YIR+V F + ++ + ++D+ IRIW+ ++R + +L GH + + P D +VS S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 155 LDQTVRVWDIGALRKK-TVSPADDILRLSQMNTD----LFGGVDAVVK-------YVLE- 201
D+TVR+WD+ + T+S D + ++ D G +D V+ +++E
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 202 ---------GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM------NETKAWEVDTLR- 245
GH V F +VSG+ DR VKLW + +++K T
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 246 ---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH--- 299
GH + V V + I+S S+D+ + WD K++G + R +++
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD--KKSGNPLLMLQGHRNSVISVAVAN 362
Query: 300 -----PEMNLLAAGH-DSGMIVFKLERERP 323
PE N+ A G D ++K ++ P
Sbjct: 363 GSSLGPEYNVFATGSGDCKARIWKYKKIAP 392
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 32/282 (11%)
Query: 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
++ + F ++ +I++WD ++ H+ + + + S VSG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWNWQSRTCISV 130
D +++W+ + +C TL D + TV + +I + S D+ +R+W+ ++ +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 131 L-------TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183
L TGH V F VVS SLD++V++W++ K S
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-----------SD 293
Query: 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243
T G + V Y+ GH V A I+SG+ DR V W ++ +
Sbjct: 294 SKTPNSGTCE--VTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFW--DKKSGNPLLM 347
Query: 244 LRGHMNNVSCVM------FHAKQDIIVSNSEDKSIRVWDVTK 279
L+GH N+V V + ++ + S D R+W K
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK 270
F P + +GA+DR +++W + K V L+GH ++ + + D +VS S D+
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG----------HDSGMIVFKLER 320
++R+WD+ T E + S + +AAG ++G +V +L+
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 321 ERPAFAVSGDSLF 333
E + DS++
Sbjct: 248 ENESGTGHKDSVY 260
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 41/312 (13%)
Query: 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
+Q++ G + H+ V F + D K+K+WN + T
Sbjct: 644 TLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE 703
Query: 92 HLDYIRTVQF----HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
H + + F HH + + S D +++W+ + C + + GH + V F P +
Sbjct: 704 HSEQVNCCHFTNSSHHLL--LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 761
Query: 148 DLVVSASLDQTVRVWD-IGALRKKTVS----------PADD---ILRLSQMNTD------ 187
L+ S S D T+++WD A +K+++ P +D I++ + D
Sbjct: 762 KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMV 821
Query: 188 -------LFG-GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239
LF ++ + GH + + F P L V V+LW N
Sbjct: 822 AAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELW--NTDSRS 879
Query: 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK--RTGVQTFRREHDRFWILA 297
+V RGH++ V VMF +++S+D++IR+W+ K + ++E D ++
Sbjct: 880 KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD---VVF 936
Query: 298 SHPEMNLLAAGH 309
E+ +LA H
Sbjct: 937 QENEVMVLAVDH 948
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)
Query: 17 FHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76
F +LA H +QL + R G ID E + H F G ++ I+
Sbjct: 936 FQENEVMVLAVDHIRRLQLINGRTGQ-IDYLTEAQVSCCCLSPHLQYIAF--GDENGAIE 992
Query: 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH 136
+ +R + H + +QF + ++S+SDD I++WNWQ CI L GH
Sbjct: 993 ILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQE 1051
Query: 137 YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKK--------TVSPAD---DILRLSQM 184
V F K ++S S D TV+VW+I K+ TV D D + S
Sbjct: 1052 TV--KDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Query: 185 NTDLFGGV---DAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234
+ D + D ++ + L GH+ V +AF L+ +G D+ ++++W ++
Sbjct: 1110 SADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 31/189 (16%)
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
H D + F + I S D+T++++ ++ + + H V+C +F + +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211
+ S+D+ V++W+ M +L D H VN
Sbjct: 680 TCSVDKKVKIWN-------------------SMTGELVHTYDE--------HSEQVNCCH 712
Query: 212 FHPTLP--LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269
F + L+ +G+ D +KLW +N+ + +T+ GH N+V+ F ++ S S D
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDKLLASCSAD 770
Query: 270 KSIRVWDVT 278
++++WD T
Sbjct: 771 GTLKLWDAT 779
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 34/227 (14%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H ++ F L V Y +++WN + GHL ++ V F + +
Sbjct: 845 HHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
++SDDQTIR+W + C N VM L Q V V + +
Sbjct: 905 TSSDDQTIRLWE-TKKVC------KNSAVM---------------LKQEVDV--VFQENE 940
Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
V D I RL +N G + Y+ E V+ P L I G ++ ++
Sbjct: 941 VMVLAVDHIRRLQLIN-----GRTGQIDYLTEAQ---VSCCCLSPHLQYIAFGDENGAIE 992
Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
+ + + ++ + H V + F A + ++S+S+D I+VW+
Sbjct: 993 ILELVNNRIFQ--SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 67 VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
++G DD I+V++ + L L GH + +++ H +VS S D+T+R+W+ +
Sbjct: 136 ITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 194
Query: 127 CISVLTGHNHYVMCASFHPKEDL--VVSASLDQTVRVWDIGALRKKTVSPADD------- 177
C V GHN V C +++ +V+ S D T+ VW L K++ P
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW---KLPKESSVPDHGEEHDYPL 251
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237
+ + N G VL GH V + H ++VSG+ D + +W + + K
Sbjct: 252 VFHTPEENPYFVG--------VLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXK 301
Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277
+ L GH + + ++ ++ +S S D +IR+WD+
Sbjct: 302 CLYI--LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H VR V H + + VSG D + VW+ +CL+ L GH D I + + HE +
Sbjct: 269 HXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SAS D TIRIW+ ++ L GH V K +VSA+ D ++R WD +
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSR 384
Query: 170 K 170
K
Sbjct: 385 K 385
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 118/320 (36%), Gaps = 62/320 (19%)
Query: 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH 92
I+++D + + HDG V + + + VSG D ++VW+ K C GH
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGH 202
Query: 93 LDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTC----------------------- 127
+R + + +IV+ S D T+ +W +
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187
+ VL GH V S H ++VVS S D T+ VWD+ +
Sbjct: 263 VGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVAQXK------------------- 301
Query: 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247
Y+L GH + + +S + D +++W + + TL+GH
Sbjct: 302 --------CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL--XYTLQGH 351
Query: 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS-HPEMNLLA 306
V + K +VS + D SIR WD + + F H + + + N+L
Sbjct: 352 TALVGLLRLSDK--FLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILV 407
Query: 307 AGHDSGMIVFKLERERPAFA 326
+G ++ ++ L + A
Sbjct: 408 SGSENQFNIYNLRSGKLVHA 427
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 129 SVLTGHNHYVM-CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187
+ L GH V+ C F +++ V++ + D+ +RV+D ++ KK +L+LS
Sbjct: 115 TTLRGHXTSVITCLQF--EDNYVITGADDKXIRVYD--SINKKF------LLQLS----- 159
Query: 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247
GHD GV WA + ++VSG+ DR V++W + K GH
Sbjct: 160 --------------GHDGGV-WALKYAHGGILVSGSTDRTVRVWDIK--KGCCTHVFEGH 202
Query: 248 MNNVSCVMFHAKQDI--IVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305
+ V C+ ++I IV+ S D ++ VW + K + V EHD + ++ PE N
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPY 261
Query: 306 AAG 308
G
Sbjct: 262 FVG 264
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278
+++GADD+ ++++ K + L GH V + + A I+VS S D+++RVWD+
Sbjct: 135 VITGADDKXIRVYDSINKKF--LLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 279 KRTGVQTFRREHD--RFWILASHPEMNLLAAG-HDSGMIVFKLERE 321
K F + R + + + + G D+ + V+KL +E
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 125/277 (45%), Gaps = 35/277 (12%)
Query: 60 HKSQPLFVSGGDDYKIKVWN-YKMHRCLF------TLLGHLDYIRTVQFHHEYPWIVSAS 112
++ P+ +SG D + +W Y+ + + L GH ++ + E + +S+S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 113 DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172
D+T+R+W+ ++ T GH V +F P ++SA ++ +++W+I L +
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI--LGECKF 153
Query: 173 SPADDILRLSQMNTDLFGGVDAVVKY--VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230
S A+ + ++D + V+Y +++ ++ P P S D ++K+
Sbjct: 154 SSAE-----KENHSDWV----SCVRYSPIMKSANK------VQPFAPYFASVGWDGRLKV 198
Query: 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
W N + T + H +NV+ + I + +DK + +WD+ T Q RE
Sbjct: 199 WNTNFQIRY---TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ---REF 252
Query: 291 D---RFWILASHPEMNLLAAGHDSGMIVFKLERERPA 324
D +A +P++ +A G D G+ +F L + A
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA 289
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 192 VDAVVKYVLEGHDRGVNW--AAF----HPTLPLIVSGADDRQVKLWRMNETK-----AWE 240
+ V + +LEGH V A F + P+++SG+ D+ V +W++ E +
Sbjct: 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
L GH + VS + + +S+S DK++R+WD+ T + F + +A P
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 301 E-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR 338
+ +L+AG ERE + + G+ F + ++
Sbjct: 129 DNRQILSAG---------AEREIKLWNILGECKFSSAEK 158
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 28/172 (16%)
Query: 130 VLTGHNHYV--MCASFHPKED----LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183
+L GH+ +V + A F KE+ +++S S D+TV +W + +
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL----------------YEE 59
Query: 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243
FG + L GH+ V+ A +S + D+ ++LW + ++
Sbjct: 60 EQNGYFG----IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK--R 113
Query: 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI 295
GH + V V F I+S ++ I++W++ + +E+ W+
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 64 PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
P F S G D ++KVWN + +T H + + +I + D+ + IW+
Sbjct: 185 PYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172
+ T + +F+PK V + DQ V+++++ K V
Sbjct: 244 NLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPV 291
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)
Query: 67 VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
++G DD I+V++ + L L GH + +++ H +VS S D+T+R+W+ +
Sbjct: 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 194
Query: 127 CISVLTGHNHYVMCASFHPKEDL--VVSASLDQTVRVWDIGALRKKTVSPADD------- 177
C V GHN V C +++ +V+ S D T+ VW L K++ P
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW---KLPKESSVPDHGEEHDYPL 251
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237
+ + N G VL GH V + H ++VSG+ D + +W + + K
Sbjct: 252 VFHTPEENPYFVG--------VLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMK 301
Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277
+ L GH + + ++ ++ +S S D +IR+WD+
Sbjct: 302 CLYI--LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H VR V H + + VSG D + VW+ +CL+ L GH D I + + HE +
Sbjct: 269 HMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
SAS D TIRIW+ ++ + L GH V K +VSA+ D ++R WD +
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSR 384
Query: 170 K 170
K
Sbjct: 385 K 385
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 62/330 (18%)
Query: 23 WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82
+++ +I+++D + + HDG V + + + VSG D ++VW+ K
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 192
Query: 83 HRCLFTLLGHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTC------------- 127
C GH +R + + +IV+ S D T+ +W +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 128 ----------ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
+ VL GH V S H ++VVS S D T+ VWD+ ++
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQMK--------- 301
Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237
Y+L GH + + +S + D +++W + +
Sbjct: 302 ------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343
Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILA 297
+ TL+GH V + K +VS + D SIR WD + + F H +
Sbjct: 344 L--MYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAIT 397
Query: 298 S-HPEMNLLAAGHDSGMIVFKLERERPAFA 326
+ + N+L +G ++ ++ L + A
Sbjct: 398 TFYVSDNILVSGSENQFNIYNLRSGKLVHA 427
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 36/183 (19%)
Query: 129 SVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187
+ L GH + C F +++ V++ + D+ +RV+D ++ KK +L+LS
Sbjct: 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYD--SINKKF------LLQLS----- 159
Query: 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247
GHD GV WA + ++VSG+ DR V++W + K GH
Sbjct: 160 --------------GHDGGV-WALKYAHGGILVSGSTDRTVRVWDIK--KGCCTHVFEGH 202
Query: 248 MNNVSCVMFHAKQDI--IVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305
+ V C+ ++I IV+ S D ++ VW + K + V EHD + ++ PE N
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPY 261
Query: 306 AAG 308
G
Sbjct: 262 FVG 264
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 43 LIDRFDEH-DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL---GHLDYIRT 98
L+ R H D + ++ + L S G D +I++W + + + GH +R
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK 66
Query: 99 VQFHHEYPWIVSASDDQTIRIW--NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156
V + ++ SAS D T IW N C++ L GH + V ++ P +L+ + S D
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216
++V VW++ D + V VL H + V +HP+
Sbjct: 127 KSVWVWEVD-------------------EEDEYECVS-----VLNSHTQDVKHVVWHPSQ 162
Query: 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275
L+ S + D VKL+R E TL GH + V + F + S S+D+++R+W
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107
H VR V + S D +W N C+ TL GH + +++V +
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 108 IVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
+ + S D+++ +W C+SVL H V +HP ++L+ SAS D TV+
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK---- 175
Query: 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224
L + D D V LEGH+ V AF P+ + S +D
Sbjct: 176 ----------------LYREEED-----DWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214
Query: 225 DRQVKLWRM 233
DR V++WR
Sbjct: 215 DRTVRIWRQ 223
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 191 GVDAVVKYVL-EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
G + K VL EGH R V A+ P + S + D +W+ N+ V TL GH N
Sbjct: 47 GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN 106
Query: 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR---TGVQTFRREHDRFWILASHPEMNLLA 306
V V + +++ + S DKS+ VW+V + V + HP LLA
Sbjct: 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166
Query: 307 -AGHDSGMIVFKLERE 321
A +D + +++ E +
Sbjct: 167 SASYDDTVKLYREEED 182
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSE 268
A++P L+ S DR++++W E +W ++ GH V V + + + S S
Sbjct: 23 AWNPAGTLLASCGGDRRIRIW-GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 269 DKSIRVWDVTKR--TGVQTFRREHDRFWILASHPEMNLLA-AGHDSGMIVFKLERERPAF 325
D + +W + V T + +A P NLLA D + V++++ E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 326 AVS 328
VS
Sbjct: 142 CVS 144
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-- 90
++LW+ + G +F H V V F VSGG D ++VWN K C+ TL
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRG 149
Query: 91 GHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
H D++ V+F + P IVS D +++W+ + ++ L GH +YV + P
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 149 LVVSASLDQTVRVWDI 164
L S+ D R+WD+
Sbjct: 210 LCASSDKDGVARLWDL 225
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 36/249 (14%)
Query: 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY 105
R + H V V + VS D+ +++WN + +C + LGH + +V F +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 106 PWIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKED--LVVSASLDQTVRV 161
IVS D +R+WN + C+ L+ H +V C F P D ++VS D V+V
Sbjct: 122 RQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS 221
WD+ R + TD L+GH V P L S
Sbjct: 181 WDLATGR---------------LVTD------------LKGHTNYVTSVTVSPDGSLCAS 213
Query: 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281
D +LW + + +A +N + F + + + +E K IR++D+ +
Sbjct: 214 SDKDGVARLWDLTKGEALSEMAAGAPINQ---ICFSPNRYWMCAATE-KGIRIFDLENKD 269
Query: 282 GVQTFRREH 290
+ EH
Sbjct: 270 IIVELAPEH 278
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 25 LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84
L+ G ++LWD GT RF H V V F VSG D IK+WN +
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGV 160
Query: 85 CLFTLL--GHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC 140
C +T+ H +++ V+F + P IVS D+ +++WN + + GH Y+
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220
Query: 141 ASFHPKEDLVVSASLDQTVRVWDI 164
+ P L S D +WD+
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDL 244
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 29/299 (9%)
Query: 42 TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLF-----TLLGHLDY 95
TL H+G V + P + +S D I +W + L GH +
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155
+ V + + +S S D T+R+W+ + T GH V+ +F +VS S
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 156 DQTVRVWDIGALRKKTV-----SPADDILRLSQMNTD---LFGGVDAVVK-YVLE----- 201
D+T+++W+ + K TV S +R S +++ + G D +VK + L
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 202 ----GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
GH +N P L SG D Q LW +NE K + TL G ++ +
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDG--GDIINALCF 264
Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316
+ + + SI++WD+ + V ++E A P+ LA D G +F
Sbjct: 265 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD-GQTLF 322
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHF--H 60
+F + V ++F S I++ I+LW+ DE H V V F +
Sbjct: 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
S P+ VS G D +KVWN + +GH Y+ TV + S D +W
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
+ + L G + + F P + +A+ ++++WD+
Sbjct: 243 DLNEGKHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDL 284
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 25 LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84
L+ G ++LWD GT RF H V V F VSG D IK+WN +
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGV 137
Query: 85 CLFTLL--GHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC 140
C +T+ H +++ V+F + P IVS D+ +++WN + + GH Y+
Sbjct: 138 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 197
Query: 141 ASFHPKEDLVVSASLDQTVRVWDI 164
+ P L S D +WD+
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDL 221
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 29/299 (9%)
Query: 42 TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLF-----TLLGHLDY 95
TL H+G V + P + +S D I +W + L GH +
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155
+ V + + +S S D T+R+W+ + T GH V+ +F +VS S
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 156 DQTVRVWDIGALRKKTV-----SPADDILRLSQMNTD---LFGGVDAVVK-YVLE----- 201
D+T+++W+ + K TV S +R S +++ + G D +VK + L
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 202 ----GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
GH +N P L SG D Q LW +NE K + TL G ++ +
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDG--GDIINALCF 241
Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316
+ + + SI++WD+ + V ++E A P+ LA D G +F
Sbjct: 242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD-GQTLF 299
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHF--H 60
+F + V ++F S I++ I+LW+ DE H V V F +
Sbjct: 100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 159
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
S P+ VS G D +KVWN + +GH Y+ TV + S D +W
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
+ + L G + + F P + +A+ ++++WD+
Sbjct: 220 DLNEGKHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDL 261
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 110/307 (35%), Gaps = 35/307 (11%)
Query: 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG 69
N+V + + + I++S G + +WD V + S G
Sbjct: 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG 124
Query: 70 GDDYKIKVW------NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
G D K V+ N M ++ H +Y+ F + I++AS D T +W+ +
Sbjct: 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE 184
Query: 124 SRTCISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181
S + GH V+C P E + VS D+ VWD +R
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD---------------MRS 229
Query: 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241
Q E H+ VN ++P+ SG+DD +L+ + + +
Sbjct: 230 GQ------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277
Query: 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301
+ + S V F ++ + D +I VWDV K + V +R L P+
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 302 MNLLAAG 308
+G
Sbjct: 338 GTAFCSG 344
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 31/227 (13%)
Query: 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LF 66
+N + SF + IL + G LWD G L+ F H V + S+ F
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213
Query: 67 VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
VSGG D K VW+ + +C+ H + +V+++ S SDD T R+++ ++
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273
Query: 127 CISVLTGHNHYVMCAS--FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184
+++ + + +S F L+ + D T+ VWD+ L+ VS
Sbjct: 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV--LKGSRVS----------- 320
Query: 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231
+L GH+ V+ P SG+ D +++W
Sbjct: 321 --------------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)
Query: 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK--TVSPADDILRLSQMNTD 187
L GH + V+C + + +VS+S D V VWD K+ P ++ + +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 188 L---FGGVDAVVKYVLEGHDRGVNWAAFHPTLPL----------------IVSGADDRQV 228
GG+D D+ N AA ++ + I++ + D
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178
Query: 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRVWDVTKRTGVQTF 286
LW + + + + GH +V C+ + + VS DK VWD+ VQ F
Sbjct: 179 ALWDVESGQL--LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 287 RREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFAVSGDSLFYA 335
+ +P + A+G D ++ L +R S +S+ +
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 42/207 (20%)
Query: 42 TLIDRFDE--HDGPVRGVHFHKSQPLFVSGGDDYKIKVW--------NYKMHRCLFTLLG 91
TLID DE H +R V + L +G D + +W ++M L + G
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD-LLAIIEG 105
Query: 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIW----NWQSRTCISVLTGHNHYVMCASFHPKE 147
H + ++ V + ++ ++ + S D+++ IW + + CISVL H+ V +HP E
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
L+ S+S D TVR+W DD D VL GH+ V
Sbjct: 166 ALLASSSYDDTVRIW----------KDYDD---------------DWECVAVLNGHEGTV 200
Query: 208 NWAAFHPTLPL--IVSGADDRQVKLWR 232
+ F T + + SG+DD V++W+
Sbjct: 201 WSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 42/233 (18%)
Query: 59 FHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD------YIRTVQFHHEYPWIVSAS 112
F SQ + +G D KIK+ + K FTL+ LD IR+V + + + S
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDD--FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77
Query: 113 DDQTIRIWNWQS---RT----CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
D T+ IW + RT ++++ GH + V ++ + + S D++V +W+
Sbjct: 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE-- 135
Query: 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225
TD G + VL+ H + V +HP+ L+ S + D
Sbjct: 136 --------------------TDESGEEYECIS-VLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 226 RQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDI--IVSNSEDKSIRVW 275
V++W+ + WE V L GH V F + + + S S+D ++RVW
Sbjct: 175 DTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRG 56
+L E N VKG+++ + ++ + +W+ I EH V+
Sbjct: 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 57 VHFHKSQPLFVSGGDDYKIKVW-NYKMH-RCLFTLLGHLDYIRTVQFHHEYP--WIVSAS 112
V +H S+ L S D +++W +Y C+ L GH + + F + S S
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218
Query: 113 DDQTIRIW 120
DD T+R+W
Sbjct: 219 DDSTVRVW 226
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233
D ++L + D F +D + + H + + A+ P L+ +G+ D V +W
Sbjct: 31 STDRKIKLVSVKYDDFTLIDVLDE---TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87
Query: 234 NET--KAWEVDTL---RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ---- 284
E+ + +E+D L GH N V V + + + S DKS+ +W+ T +G +
Sbjct: 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE-TDESGEEYECI 146
Query: 285 TFRREHDR-----FWILASHPEMNLLA-AGHDSGMIVFK 317
+ +EH + W HP LLA + +D + ++K
Sbjct: 147 SVLQEHSQDVKHVIW----HPSEALLASSSYDDTVRIWK 181
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 23/277 (8%)
Query: 39 RMGTLIDRFDEHDGPVR----GVHFHKSQPLFVSGGDDYKIKVWNYKMHRC--LFTLLGH 92
+ G L + HD + G + ++ V+G D +KVW ++ R ++L GH
Sbjct: 20 QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH 79
Query: 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152
+ +V H P S+S D IR+W+ ++ I + +F P + +
Sbjct: 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 153 ASLDQTVRVWDIGALRKK-------------TVSPADDILRLSQMN--TDLFGGVDAVVK 197
+ V ++ + + +K+ SP L ++ ++F +
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
+ LEGH + F P L+V+ +DD +K++ + TL GH + V V F
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL--AGTLSGHASWVLNVAFC 257
Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294
VS+S DKS++VWDV RT V TF D+ W
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 76/159 (47%)
Query: 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
+T+ + +++ ++ + G+I ++D G L+ + H P+R + F
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
L V+ DD IK+++ + TL GH ++ V F + VS+S D+++++W+ +
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279
Query: 125 RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
RTC+ H V ++ +VS DQ + ++D
Sbjct: 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%)
Query: 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74
L+F ++ H G + ++ G D + + + SG D
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134
I +++ + L TL GH IR++ F + +V+ASDD I+I++ Q L+GH
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166
+V+ +F P + VS+S D++V+VWD+G
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278
+V+G+ D VK+W+ + + +L GH V V I S+S D IR+WD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAF------------ 325
+++ W LA P+ LA G G + +F +E + +
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170
Query: 326 AVSGDSLFYAK---DRFLRYYEFSTQK-----DTQVIPIRRPGSTSLNQSPRTLSYSPTE 377
A S D + A D + ++ +T K + +PI R+L++SP
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI------------RSLTFSPDS 218
Query: 378 NAVLICSD 385
++ SD
Sbjct: 219 QLLVTASD 226
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 33/246 (13%)
Query: 33 IQLWDYRMGTLIDRFDEHDGPVRG--VHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90
I+LWD G I D GPV + F +G K+ ++ + + ++L
Sbjct: 104 IRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
+I ++ + + ++ S + D I I++ + + L GH + +F P L+
Sbjct: 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
V+AS D ++++D+ + +L G L GH V
Sbjct: 222 VTASDDGYIKIYDV-------------------QHANLAG--------TLSGHASWVLNV 254
Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK 270
AF P VS + D+ VK+W + V T H + V V ++ IVS +D+
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312
Query: 271 SIRVWD 276
I ++D
Sbjct: 313 EIHIYD 318
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%)
Query: 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
+L E + ++ L+F ++ + G I+++D + L H V V F
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
FVS D +KVW+ C+ T H D + V+++ IVS DDQ I I+
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 121 N 121
+
Sbjct: 318 D 318
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H G V + + + VS D ++ VWN + + H ++ F +
Sbjct: 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124
Query: 110 SASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRV 161
D I+N S+ VLTGH Y + P +E +++ S DQT +
Sbjct: 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL 184
Query: 162 WDIGALRKKTVSPAD-------DILRLS--QMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212
WD+ ++ ++ ++ D+L LS +N ++F
Sbjct: 185 WDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF----------------------- 221
Query: 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI 272
+SG+ D V+LW + T V T GH +++ V F + S+D +
Sbjct: 222 -------ISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 273 RVWDVTKRTGVQTFRREHDR 292
R++D+ +Q + RE DR
Sbjct: 274 RLFDMRTGHQLQVYNREPDR 293
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 52/258 (20%)
Query: 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK----KTVSP-ADDILRL 181
C L GH+ V + P+++ +VSAS D + VW+ +K K P +
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 182 SQMNTDLFGGVDAV-----------------VKYVLEGHDRGVNWAAFHPTLPL-IVSGA 223
+ GG+D+ V VL GH + + P +++G+
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 224 DDRQVKLWRMNETKAWEV---DTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWD--V 277
D+ LW + + + + GH +V + ++ ++ +S S D ++R+WD +
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI------------VFKLERERP-- 323
T R V+T+ + P+ G D G V+ E +R
Sbjct: 238 TSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296
Query: 324 --------AFAVSGDSLF 333
AF++SG LF
Sbjct: 297 ELPIVTSVAFSISGRLLF 314
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H G + F + S GD +W+ + + T GH + ++ + V
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 211
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
S + D + ++W+ + C TGH + F P + + S D T R++D+ A ++
Sbjct: 212 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271
Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
D+I+ G+ +F + L+++G DD
Sbjct: 272 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 306
Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
+W + KA L GH N VSC+ + + S D +++W+
Sbjct: 307 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
I+ S LWD G F H G V + LFVSG D K+W+ +
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
C T GH I + F + SDD T R+++ ++ ++T + ++C
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 285
Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
SF L+++ D VWD
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWD 309
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
+LWD R G F H+ + + F + F +G DD ++++ + + L T H
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 278
Query: 94 DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
+ I +V F +++ DD +W+ VL GH++ V C V
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 338
Query: 151 VSASLDQTVRVWD 163
+ S D +++W+
Sbjct: 339 ATGSWDSFLKIWN 351
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
TL GHL I + + + +VSAS D + IW+ + + + + +VM ++ P
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ V LD ++++ R+ V V L GH +
Sbjct: 121 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 157
Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
+ F IV+ + D LW + + T GH +V + + VS +
Sbjct: 158 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 214
Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
D S ++WDV + QTF + P N A G D +F L ++
Sbjct: 215 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 327 VSGDSLF 333
S D++
Sbjct: 275 YSHDNII 281
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H G + F + S GD +W+ + + T GH + ++ + V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
S + D + ++W+ + C TGH + F P + + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
D+I+ G+ +F + L+++G DD
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
+W + KA L GH N VSC+ + + S D +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
I+ S LWD G F H G V + LFVSG D K+W+ +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
C T GH I + F + SDD T R+++ ++ ++T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274
Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
SF L+++ D VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
+LWD R G F H+ + + F + F +G DD ++++ + + L T H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267
Query: 94 DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
+ I +V F +++ DD +W+ VL GH++ V C V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 151 VSASLDQTVRVWD 163
+ S D +++W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
TL GHL I + + + ++SAS D + IW+ + + + + +VM ++ P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ V LD ++++ R+ V V L GH +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146
Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
+ F IV+ + D LW + + T GH +V + + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
D S ++WDV + QTF + P N A G D +F L ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 327 VSGDSLF 333
S D++
Sbjct: 264 YSHDNII 270
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H G + F + S GD +W+ + + T GH + ++ + V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
S + D + ++W+ + C TGH + F P + + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
D+I+ G+ +F + L+++G DD
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
+W + KA L GH N VSC+ + + S D +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
I+ S LWD G F H G V + LFVSG D K+W+ +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
C T GH I + F + SDD T R+++ ++ ++T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274
Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
SF L+++ D VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
+LWD R G F H+ + + F + F +G DD ++++ + + L T H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267
Query: 94 DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
+ I +V F +++ DD +W+ VL GH++ V C V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 151 VSASLDQTVRVWD 163
+ S D +++W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
TL GHL I + + + ++SAS D + IW+ + + + + +VM ++ P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ V LD ++++ R+ V V L GH +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146
Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
+ F IV+ + D LW + + T GH +V + + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
D S ++WDV + QTF + P N A G D +F L ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 327 VSGDSLF 333
S D++
Sbjct: 264 YSHDNII 270
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H G + F + S GD +W+ + + T GH + ++ + V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
S + D + ++W+ + C TGH + F P + + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
D+I+ G+ +F + L+++G DD
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
+W + KA L GH N VSC+ + + S D +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
I+ S LWD G F H G V + LFVSG D K+W+ +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
C T GH I + F + SDD T R+++ ++ ++T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274
Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
SF L+++ D VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
+LWD R G F H+ + + F + F +G DD ++++ + + L T H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267
Query: 94 DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
+ I +V F +++ DD +W+ VL GH++ V C V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 151 VSASLDQTVRVWD 163
+ S D +++W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
TL GHL I + + + +VSAS D + IW+ + + + + +VM ++ P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ V LD ++++ R+ V V L GH +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146
Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
+ F IV+ + D LW + + T GH +V + + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
D S ++WDV + QTF + P N A G D +F L ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 327 VSGDSLF 333
S D++
Sbjct: 264 YSHDNII 270
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H G + F + S GD +W+ + + T GH + ++ + V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
S + D + ++W+ + C TGH + F P + + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
D+I+ G+ +F + L+++G DD
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
+W + KA L GH N VSC+ + + S D +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
I+ S LWD G F H G V + LFVSG D K+W+ +
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
C T GH I + F + SDD T R+++ ++ ++T + ++C
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274
Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
SF L+++ D VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
+LWD R G F H+ + + F + F +G DD ++++ + + L T H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267
Query: 94 DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
+ I +V F +++ DD +W+ VL GH++ V C V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 151 VSASLDQTVRVWD 163
+ S D +++W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
TL GHL I + + + +VSAS D + IW+ + + + + +VM ++ P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ V LD ++++ R+ V V L GH +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146
Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
+ F IV+ + D LW + + T GH +V + + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
D S ++WDV + QTF + P N A G D +F L ++
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 327 VSGDSLF 333
S D++
Sbjct: 264 YSHDNII 270
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 123/301 (40%), Gaps = 46/301 (15%)
Query: 31 GVIQLW---DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK---VWNYKMHR 84
G ++LW D +GT++ G + V + + L + GG D I ++
Sbjct: 39 GTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGED 95
Query: 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144
L+TL+GH + ++ F ++S S D+T ++W + + + L HN V A
Sbjct: 96 PLYTLIGHQGNVCSLSFQDGV--VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVV 151
Query: 145 P-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203
E+ ++AS D+T+++W + K +D++R + V +GH
Sbjct: 152 SFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRH--------------LAVVDDGH 197
Query: 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDII 263
+S ++D +KL + + T GH + V C+ DI
Sbjct: 198 ---------------FISCSNDGLIKLVDXHTGDV--LRTYEGHESFVYCIKLLPNGDI- 239
Query: 264 VSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
VS ED+++R+W + Q W + +++ D+ + +F E+ R
Sbjct: 240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRW 299
Query: 324 A 324
A
Sbjct: 300 A 300
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 38 YRMGTLIDRFDEHDGPV---RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HL 93
++ G+L+ H+ V + V F S+ F++ D IK+W + + + T G H
Sbjct: 129 WKEGSLVYNLQAHNASVWDAKVVSF--SENKFLTASADKTIKLW--QNDKVIKTFSGIHN 184
Query: 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153
D +R + + +I S S+D I++ + + + GH +V C P D +VS
Sbjct: 185 DVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSC 242
Query: 154 SLDQTVRVW--DIGALRKKTVSPADDILRL-SQMNTDLF-GGVDAVVKYVLEGHDRGVNW 209
D+TVR+W + G+L++ PA I + N D+ G D +V+ + R W
Sbjct: 243 GEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSR---W 299
Query: 210 AA 211
A+
Sbjct: 300 AS 301
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 41/226 (18%)
Query: 108 IVSASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFH-PKEDLVVSASLDQTV 159
++SASDD T+ +W+ + ++ TGH+ V ++H E L S + DQ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
+WD R T S ++++ H VN +F+P I
Sbjct: 255 XIWDT---RSNTTSKP---------------------SHLVDAHTAEVNCLSFNPYSEFI 290
Query: 220 V-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDV 277
+ +G+ D+ V LW + K ++ T H + + V + + I+++S D+ + VWD+
Sbjct: 291 LATGSADKTVALWDLRNLKL-KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
+K Q+ D PE+ + GH + + F P
Sbjct: 350 SKIGEEQSAEDAED------GPPELLFIHGGHTAKISDFSWNPNEP 389
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 66 FVSGGDDYKIKVWNYKM---------HRCLFTLLGHLDYIRTVQFH--HEYPWIVSASDD 114
+S DD+ + +W+ + +FT GH + V +H HE S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHE-SLFGSVADD 251
Query: 115 QTIRIWNWQSRTCIS---VLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKK 170
Q + IW+ +S T ++ H V C SF+P E ++ + S D+TV +WD+ L+ K
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 14 GLSFHSK-RPWILASLHSGVIQLWDY----RMGTLIDR---FDEHDGPVRGVHFHK-SQP 64
GLS++S +L++ + LWD + G ++D F H V V +H +
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 65 LFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
LF S DD K+ +W+ + + + + H + + F+ +I+ + S D+T+ +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
+ ++ + + H + + P E ++ S+ D+ + VWD+ + ++
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-------- 355
Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
Q D G ++ ++ GH ++ +++P P +I S ++D ++W+ E
Sbjct: 356 ----QSAEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 41/226 (18%)
Query: 108 IVSASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFH-PKEDLVVSASLDQTV 159
++SASDD T+ +W+ + ++ TGH+ V ++H E L S + DQ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
+WD R T S ++++ H VN +F+P I
Sbjct: 255 MIWDT---RSNTTSKP---------------------SHLVDAHTAEVNCLSFNPYSEFI 290
Query: 220 V-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDV 277
+ +G+ D+ V LW + K ++ T H + + V + + I+++S D+ + VWD+
Sbjct: 291 LATGSADKTVALWDLRNLKL-KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
+K Q+ D PE+ + GH + + F P
Sbjct: 350 SKIGEEQSAEDAED------GPPELLFIHGGHTAKISDFSWNPNEP 389
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 56/243 (23%)
Query: 66 FVSGGDDYKIKVWNYKM---------HRCLFTLLGHLDYIRTVQFH--HEYPWIVSASDD 114
+S DD+ + +W+ + +FT GH + V +H HE S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHE-SLFGSVADD 251
Query: 115 QTIRIWNWQSRTCIS---VLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKK 170
Q + IW+ +S T ++ H V C SF+P E ++ + S D+TV +WD+ L+ K
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230
+ ++F V+W+ + T ++ S DR++ +
Sbjct: 312 -------LHTFESHKDEIF----------------QVHWSPHNET--ILASSGTDRRLNV 346
Query: 231 WRMN----ETKAWEVD--------TLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDV 277
W ++ E A + + GH +S ++ + +I S SED +++W +
Sbjct: 347 WDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Query: 278 TKR 280
+
Sbjct: 407 AEN 409
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 29/239 (12%)
Query: 14 GLSFHSK-RPWILASLHSGVIQLWDY----RMGTLIDR---FDEHDGPVRGVHFHK-SQP 64
GLS++S +L++ + LWD + G ++D F H V V +H +
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 65 LFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
LF S DD K+ +W+ + + + + H + + F+ +I+ + S D+T+ +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
+ ++ + + H + + P E ++ S+ D+ + VWD+ + ++
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-------- 355
Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
Q D G ++ ++ GH ++ +++P P +I S ++D +++W+M E
Sbjct: 356 ----QSAEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 107 WIVSASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFH-PKEDLVVSASLDQT 158
+++SASDD TI +W+ + ++ TGH V ++H E L S + DQ
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218
+ +WD T P+ + ++ H VN +F+P
Sbjct: 260 LMIWD--TRNNNTSKPS----------------------HTVDAHTAEVNCLSFNPYSEF 295
Query: 219 IV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWD 276
I+ +G+ D+ V LW + K ++ + H + + V + + I+++S D+ + VWD
Sbjct: 296 ILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Query: 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
++K Q+ D PE+ + GH + + F P +VS D++
Sbjct: 355 LSKIGEEQSTEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 29/198 (14%)
Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDL 188
L GH S++P ++SAS D T+ +WDI A K+ V A +I
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI---------- 230
Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRG 246
F G AVV+ V W H + L S ADD+++ +W R N T T+
Sbjct: 231 FTGHTAVVE--------DVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSK-PSHTVDA 279
Query: 247 HMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEM 302
H V+C+ F+ + I+ + S DK++ +WD+ + + +F D + + + H E
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 303 NLLAAGHDSGMIVFKLER 320
L ++G D + V+ L +
Sbjct: 340 ILASSGTDRRLHVWDLSK 357
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 14 GLSFHSK-RPWILASLHSGVIQLWD-------YRMGTLIDRFDEHDGPVRGVHFHK-SQP 64
GLS++ ++L++ I LWD +R+ + F H V V +H +
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 65 LFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
LF S DD K+ +W N + T+ H + + F+ +I+ + S D+T+ +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
+ ++ + + H + + P E ++ S+ D+ + VWD+ + ++
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-------- 361
Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
Q D G ++ ++ GH ++ +++P P +I S ++D +++W+M E
Sbjct: 362 ----QSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 107 WIVSASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFH-PKEDLVVSASLDQT 158
+++SASDD TI +W+ + ++ TGH V ++H E L S + DQ
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218
+ +WD T P+ + ++ H VN +F+P
Sbjct: 258 LMIWD--TRNNNTSKPS----------------------HTVDAHTAEVNCLSFNPYSEF 293
Query: 219 IV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWD 276
I+ +G+ D+ V LW + K ++ + H + + V + + I+++S D+ + VWD
Sbjct: 294 ILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Query: 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
++K Q+ D PE+ + GH + + F P +VS D++
Sbjct: 353 LSKIGEEQSTEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 29/198 (14%)
Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDL 188
L GH S++P ++SAS D T+ +WDI A K+ V A +I
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI---------- 228
Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRG 246
F G AVV+ V W H + L S ADD+++ +W R N T T+
Sbjct: 229 FTGHTAVVE--------DVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSK-PSHTVDA 277
Query: 247 HMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEM 302
H V+C+ F+ + I+ + S DK++ +WD+ + + +F D + + + H E
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 303 NLLAAGHDSGMIVFKLER 320
L ++G D + V+ L +
Sbjct: 338 ILASSGTDRRLHVWDLSK 355
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 14 GLSFHSK-RPWILASLHSGVIQLWD-------YRMGTLIDRFDEHDGPVRGVHFHK-SQP 64
GLS++ ++L++ I LWD +R+ + F H V V +H +
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 65 LFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
LF S DD K+ +W N + T+ H + + F+ +I+ + S D+T+ +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
+ ++ + + H + + P E ++ S+ D+ + VWD+ + ++
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-------- 359
Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
Q D G ++ ++ GH ++ +++P P +I S ++D +++W+M E
Sbjct: 360 ----QSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 107 WIVSASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFH-PKEDLVVSASLDQT 158
+++SASDD TI +W+ + ++ TGH V ++H E L S + DQ
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218
+ +WD T P+ + ++ H VN +F+P
Sbjct: 256 LMIWD--TRNNNTSKPS----------------------HTVDAHTAEVNCLSFNPYSEF 291
Query: 219 IV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWD 276
I+ +G+ D+ V LW + K ++ + H + + V + + I+++S D+ + VWD
Sbjct: 292 ILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Query: 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
++K Q+ D PE+ + GH + + F P +VS D++
Sbjct: 351 LSKIGEEQSTEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 29/198 (14%)
Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDL 188
L GH S++P ++SAS D T+ +WDI A K+ V A +I
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI---------- 226
Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRG 246
F G AVV+ V W H + L S ADD+++ +W R N T T+
Sbjct: 227 FTGHTAVVE--------DVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSK-PSHTVDA 275
Query: 247 HMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEM 302
H V+C+ F+ + I+ + S DK++ +WD+ + + +F D + + + H E
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 303 NLLAAGHDSGMIVFKLER 320
L ++G D + V+ L +
Sbjct: 336 ILASSGTDRRLHVWDLSK 353
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 14 GLSFHSK-RPWILASLHSGVIQLWD-------YRMGTLIDRFDEHDGPVRGVHFHK-SQP 64
GLS++ ++L++ I LWD +R+ + F H V V +H +
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 65 LFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
LF S DD K+ +W N + T+ H + + F+ +I+ + S D+T+ +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
+ ++ + + H + + P E ++ S+ D+ + VWD+ + ++
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-------- 357
Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
Q D G ++ ++ GH ++ +++P P +I S ++D +++W+M E
Sbjct: 358 ----QSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
L+GH I ++F+ ++SASDD T+RIW+ + + GH+ ++ AS+ +D
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDD 301
Query: 149 LVVSASLDQTVRVWDIGALRKKTV 172
V+S S+D +VR+W +L++ T+
Sbjct: 302 KVISCSMDGSVRLW---SLKQNTL 322
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW---NYKMHRCLF 87
G I ++ T + H GP+ + F+ + L +S DD +++W N C +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
GH I + + + ++S S D ++R+W+ + T +++ +
Sbjct: 287 ---GHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342
Query: 148 DLVVSASLDQTVRVWDIGALRKKTVS 173
A +D V V+D+ L K+ S
Sbjct: 343 QKYAVAFMDGQVNVYDLKKLNSKSRS 368
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 21/91 (23%)
Query: 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259
L GH ++ F+ T L++S +DD +++W G+ N+ +C H++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH------------GGNGNSQNCFYGHSQ 290
Query: 260 Q---------DIIVSNSEDKSIRVWDVTKRT 281
D ++S S D S+R+W + + T
Sbjct: 291 SIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 31/210 (14%)
Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189
L GH S++P ++SAS D T+ +WDI A+ K+ ++ T +F
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEG--------KVVDAKT-IF 223
Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRGH 247
G AVV+ V+W H + L S ADD+++ +W R N T ++ H
Sbjct: 224 TGHTAVVE--------DVSWHLLHES--LFGSVADDQKLMIWDTRSNNTSK-PSHSVDAH 272
Query: 248 MNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEMN 303
V+C+ F+ + I+ + S DK++ +WD+ + + +F D + + + H E
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 332
Query: 304 LLAAGHDSGMIVFKL----ERERPAFAVSG 329
L ++G D + V+ L E + P A G
Sbjct: 333 LASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 108 IVSASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFH-PKEDLVVSASLDQTV 159
++SASDD TI +W+ + ++ TGH V S+H E L S + DQ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
+WD + T P+ + ++ H VN +F+P I
Sbjct: 253 MIWDTRS--NNTSKPS----------------------HSVDAHTAEVNCLSFNPYSEFI 288
Query: 220 V-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDV 277
+ +G+ D+ V LW + K ++ + H + + V + + I+++S D+ + VWD+
Sbjct: 289 LATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
+K Q+ D PE+ + GH + + F P
Sbjct: 348 SKIGEEQSPEDAED------GPPELLFIHGGHTAKISDFSWNPNEP 387
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 104/228 (45%), Gaps = 28/228 (12%)
Query: 24 ILASLHSGVIQLWDY----RMGTLIDR---FDEHDGPVRGVHFHK-SQPLFVSGGDDYKI 75
+L++ I LWD + G ++D F H V V +H + LF S DD K+
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 76 KVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIWNWQS-RTCISV 130
+W+ + + + ++ H + + F+ +I+ + S D+T+ +W+ ++ + +
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 131 LTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189
H + + P E ++ S+ D+ + VWD+ + ++ Q D
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE------------QSPEDAE 360
Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
G ++ ++ GH ++ +++P P +I S ++D +++W+M E
Sbjct: 361 DGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 44 IDRFDEHDGPVRGVHF--HKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100
+ F +H G V+ V + +S L GG D I++WN CL + H + ++
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 338
Query: 101 FHHEYPWIVSA---SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157
+ Y ++S + +Q + IW + + ++ L GH V+ + P V SA+ D+
Sbjct: 339 WSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Query: 158 TVRVW 162
T+R+W
Sbjct: 398 TLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 44 IDRFDEHDGPVRGVHF--HKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100
+ F +H G V+ V + +S L GG D I++WN CL + H + ++
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327
Query: 101 FHHEYPWIVSA---SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157
+ Y ++S + +Q + IW + + ++ L GH V+ + P V SA+ D+
Sbjct: 328 WSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Query: 158 TVRVW 162
T+R+W
Sbjct: 387 TLRLW 391
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 54 VRGVHFHKSQPL-FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS 112
+ V F S+P +SG DD + ++ + T H ++ +V+++ + S
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 113 DDQTIRIWNWQSRTCISVL-------TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
D TI ++N T V H+ V ++ P + SAS D+T+++W++
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269
Query: 166 ALRKKTVSPADDILRLSQM 184
L+ + P + Q+
Sbjct: 270 TLKVEKTIPVGTRIEDQQL 288
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA---LRKKTV----SPAD 176
S T + T H+H A P S + VR+WD + K T+ P
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107
Query: 177 DIL------RLSQMNT--DLFGGV----DAVVKYVLEGHDRGVNWAAFHPTLPL-IVSGA 223
DI R++ + + FG V L G R +N F P+ P I+SG+
Sbjct: 108 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283
DD V ++ K T H V V ++ + S D +I +++ T
Sbjct: 168 DDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225
Query: 284 QTFRRE 289
F +
Sbjct: 226 GVFEDD 231
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-MNNVSCVMFHAKQD 261
H V ++ P + +G+ D V +W MN+ + H M++V+ V++ +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET 593
Query: 262 IIVSNSEDKSIRVWDV 277
IVS +D +I+ W+V
Sbjct: 594 TIVSAGQDSNIKFWNV 609
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 44 IDRFDEHDGPVRGVHF--HKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100
+ F +H G V+ V + +S L GG D I++WN CL + H + ++
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 247
Query: 101 FHHEYPWIVSA---SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157
+ Y ++S + +Q + IW + + ++ L GH V+ + P V SA+ D+
Sbjct: 248 WSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Query: 158 TVRVW 162
T+R+W
Sbjct: 307 TLRLW 311
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
Query: 48 DEHDGPVRGVHFH----KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH 103
++H+ P+ GV F+ + PL + ++ ++ + L ++D F+
Sbjct: 51 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 110
Query: 104 ---------EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153
+P + A IRI N + CI GH + + FHP++ +L++S
Sbjct: 111 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 170
Query: 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213
S D +R+W+I D L +FGGV EGH V A +
Sbjct: 171 SKDHALRLWNIQT----------DTL------VAIFGGV--------EGHRDEVLSADYD 206
Query: 214 PTLPLIVSGADDRQVKLWRMNETK 237
I+S D +KLWR+N +
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKR 230
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
GH +N FHP P L++S + D ++LW + + DTL GH + V
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 202
Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
+ + I+S D S+++W + + + + +D
Sbjct: 203 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 10 NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
N + L FH + P +L S+ ++LW+ + TL+ F + H V +
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 211
Query: 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
+S G D+ +K+W R + + DY P+I Q I ++ +R
Sbjct: 212 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 263
Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
H +YV C + DL++S S + + W G + D ++ S+ N
Sbjct: 264 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 310
Query: 186 TDLFGGVD 193
+ G D
Sbjct: 311 VTILGRFD 318
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
Query: 48 DEHDGPVRGVHFH----KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH 103
++H+ P+ GV F+ + PL + ++ ++ + L ++D F+
Sbjct: 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 74
Query: 104 ---------EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153
+P + A IRI N + CI GH + + FHP++ +L++S
Sbjct: 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 134
Query: 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213
S D +R+W+I D L +FGGV EGH V A +
Sbjct: 135 SKDHALRLWNIQT----------DTL------VAIFGGV--------EGHRDEVLSADYD 170
Query: 214 PTLPLIVSGADDRQVKLWRMNETK 237
I+S D +KLWR+N +
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKR 194
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
GH +N FHP P L++S + D ++LW + + DTL GH + V
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 166
Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
+ + I+S D S+++W + + + + +D
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 10 NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
N + L FH + P +L S+ ++LW+ + TL+ F + H V +
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175
Query: 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
+S G D+ +K+W R + + DY P+I Q I ++ +R
Sbjct: 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 227
Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
H +YV C + DL++S S + + W G + D ++ S+ N
Sbjct: 228 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 274
Query: 186 TDLFGGVD 193
+ G D
Sbjct: 275 VTILGRFD 282
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
Query: 48 DEHDGPVRGVHFH----KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH 103
++H+ P+ GV F+ + PL + ++ ++ + L ++D F+
Sbjct: 10 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 69
Query: 104 ---------EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153
+P + A IRI N + CI GH + + FHP++ +L++S
Sbjct: 70 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 129
Query: 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213
S D +R+W+I D L +FGGV EGH V A +
Sbjct: 130 SKDHALRLWNIQT----------DTL------VAIFGGV--------EGHRDEVLSADYD 165
Query: 214 PTLPLIVSGADDRQVKLWRMNETK 237
I+S D +KLWR+N +
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKR 189
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
GH +N FHP P L++S + D ++LW + + DTL GH + V
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 161
Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
+ + I+S D S+++W + + + + +D
Sbjct: 162 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 10 NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
N + L FH + P +L S+ ++LW+ + TL+ F + H V +
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 170
Query: 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
+S G D+ +K+W R + + DY P+I Q I ++ +R
Sbjct: 171 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 222
Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
H +YV C + DL++S S + + W G + D ++ S+ N
Sbjct: 223 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 269
Query: 186 TDLFGGVD 193
+ G D
Sbjct: 270 VTILGRFD 277
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 66 FVSGGDDYKIKVW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
F+ G + IKV N+ + R + H+ I ++F ++S+S D ++IW+ +
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-----LRKKTVSPADDI 178
+ L GH V + + V+SASLD T+R+W+ G + +P D +
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 226
Query: 179 ---------------LRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ S+ N FG KYV+ GH GV
Sbjct: 227 NSIALFVGTDRQLHEISTSKKNNLEFG---TYGKYVIAGHVSGV 267
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260
+ H + F P+ ++S + D Q+K+W + + TL GH V+ + +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRG 190
Query: 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
++S S D +IR+W+ T + TF R+ +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
R +IL + G I++ D + H + + F S +S D ++K+W+
Sbjct: 107 RRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
K TL+GH + + ++SAS D TIR+W + T I
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
+L++ G I+LW+ GT I F+ + P GV+ S LFV G D ++ K +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN---SIALFV-GTDRQLHEISTSKKN 248
Query: 84 RCLF------TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNH 136
F + GH+ + TV H+ + S +QTI++ + + +C S+ + G+N
Sbjct: 249 NLEFGTYGKYVIAGHVSGVITV--HNVF------SKEQTIQLPSKFTCSCNSLTVDGNNA 300
Query: 137 YVMCASFH 144
+ A +
Sbjct: 301 NYIYAGYE 308
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
Query: 48 DEHDGPVRGVHFH----KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH 103
++H+ P+ GV F+ + PL + ++ ++ + L ++D F+
Sbjct: 14 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 73
Query: 104 ---------EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153
+P + A IRI N + CI GH + + FHP++ +L++S
Sbjct: 74 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 133
Query: 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213
S D +R+W+I D L +FGGV EGH V A +
Sbjct: 134 SKDHALRLWNIQT----------DTL------VAIFGGV--------EGHRDEVLSADYD 169
Query: 214 PTLPLIVSGADDRQVKLWRMNETK 237
I+S D +KLWR+N +
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKR 193
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
GH +N FHP P L++S + D ++LW + + DTL GH + V
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 165
Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
+ + I+S D S+++W + + + + +D
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 10 NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
N + L FH + P +L S+ ++LW+ + TL+ F + H V +
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
+S G D+ +K+W R + + DY P+I Q I ++ +R
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 226
Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
H +YV C + DL++S S + + W G + D ++ S+ N
Sbjct: 227 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 273
Query: 186 TDLFGGVD 193
+ G D
Sbjct: 274 VTILGRFD 281
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 66 FVSGGDDYKIKVW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
F+ G + IKV N+ + R + H+ I ++F ++S+S D ++IW+ +
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-----LRKKTVSPADDI 178
+ L GH V + + V+SASLD T+R+W+ G + +P D +
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229
Query: 179 ---------------LRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
+ S+ N FG KYV+ GH GV
Sbjct: 230 NSIALFVGTDRQLHEISTSKKNNLEFG---TYGKYVIAGHVSGV 270
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260
+ H + F P+ ++S + D Q+K+W + + TL GH V+ + +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRG 193
Query: 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
++S S D +IR+W+ T + TF R+ +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
R +IL + G I++ D + H + + F S +S D ++K+W+
Sbjct: 110 RRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
K TL+GH + + ++SAS D TIR+W + T I
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 24 ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
+L++ G I+LW+ GT I F+ + P GV+ S LFV G D ++ K +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN---SIALFV-GTDRQLHEISTSKKN 251
Query: 84 RCLF------TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNH 136
F + GH+ + TV H+ + S +QTI++ + + +C S+ + G+N
Sbjct: 252 NLEFGTYGKYVIAGHVSGVITV--HNVF------SKEQTIQLPSKFTCSCNSLTVDGNNA 303
Query: 137 YVMCASFH 144
+ A +
Sbjct: 304 NYIYAGYE 311
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 38/204 (18%)
Query: 48 DEHDGPVRGVHFH----KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH 103
++H+ P+ GV F+ + PL + ++ ++ + L ++D F+
Sbjct: 14 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 73
Query: 104 ---------EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153
+P + A IRI N + CI GH + + FHP++ +L++S
Sbjct: 74 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 133
Query: 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213
S D +R+W+I D L +FGGV EGH V A +
Sbjct: 134 SKDHALRLWNIQT----------DTL------VAIFGGV--------EGHRDEVLSADYD 169
Query: 214 PTLPLIVSGADDRQVKLWRMNETK 237
I+S D +KLWR+N +
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKR 193
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
GH +N FHP P L++S + D ++LW + + DTL GH + V
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 165
Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
+ + I+S D S+++W + + + + +D
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 10 NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
N + L FH + P +L S+ ++LW+ + TL+ F + H V +
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
+S G D+ +K+W R + + DY P+I Q I ++ +R
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 226
Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
H +YV C + DL++S S + + W G + D ++ S+ N
Sbjct: 227 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 273
Query: 186 TDLFGGVD 193
+ G D
Sbjct: 274 VTILGRFD 281
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 26/168 (15%)
Query: 128 ISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKKTVSPADDILRLSQM 184
+ ++ GH V+ ++ P D ++ S S D TV VW+I G L P
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV--------- 124
Query: 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDT 243
LEGH + V A+HPT +++S D + +W + A
Sbjct: 125 -------------ITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG 171
Query: 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
H + + V + +I ++ DK +RV + K T V R H+
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 108 IVSASDDQTIRIWNWQS-------RTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQTV 159
I S S+D T+ +W R + L GH V ++HP +++++SA D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 160 RVWDIG 165
VWD+G
Sbjct: 157 LVWDVG 162
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRV 274
LPL +G D+ V L + GH V + + D +I S SED ++ V
Sbjct: 62 LPLGKTGRVDKNVPL-------------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMV 108
Query: 275 WDVTK-------RTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIVFKL 318
W++ R V T R I+A HP LL+AG D+ ++V+ +
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 26/168 (15%)
Query: 128 ISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKKTVSPADDILRLSQM 184
+ ++ GH V+ ++ P D ++ S S D TV VW+I G L P
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV--------- 124
Query: 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDT 243
LEGH + V A+HPT +++S D + +W + A
Sbjct: 125 -------------ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171
Query: 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
H + + V + +I ++ DK +RV + K T V R H+
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 108 IVSASDDQTIRIWNWQS-------RTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQTV 159
I S S+D T+ +W R + L GH V ++HP +++++SA D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 160 RVWDIG 165
VWD+G
Sbjct: 157 LVWDVG 162
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRV 274
LPL +G D+ V L + GH V + + D +I S SED ++ V
Sbjct: 62 LPLGKTGRVDKNVPL-------------VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108
Query: 275 WDVTK-------RTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIVFKL 318
W++ R V T R I+A HP LL+AG D+ ++V+ +
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 24 ILASLHSGVIQLW--DYRMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79
IL + SG ++LW D ++ +F EHD V V S VSG D IKVW+
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 80 YKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWN 121
L + H + V H+ +S S+D I +W+
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 219 IVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
I+ +D V+LW ++E + V H + VS V + VS S+D I+VWD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 277 VTKRTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334
+ ++ + ++R + +A+ P + L+ D+ ++++ +PA + + Y
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 69 GGDDYKIKVWNYKMHRCL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
D +++W + L F H D + TV VS S D I++W+
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 125 RTCISVLTGHNHYVMCASFHPKEDLV-VSASLDQTVRVWD 163
+ +S H V C + P +D V +S S D + +WD
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 24 ILASLHSGVIQLWDY--RMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79
IL + SG ++LW+ + L+++F EHD V+ + VSGG D+ +KVW+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 80 YKMHRCLFTLLGHLDYIRTV 99
L + H + V
Sbjct: 168 LSQKAVLKSYNAHSSEVNCV 187
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
F H D ++T+ + VS D ++++W+ + + H+ V C + P
Sbjct: 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192
Query: 147 EDLV-VSASLDQTVRVWD 163
+D + +S D + +WD
Sbjct: 193 KDTIFLSCGEDGRILLWD 210
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVT 278
VSG D VK+W +++ + + H + V+CV +D I +S ED I +WD
Sbjct: 155 VSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Query: 279 K 279
K
Sbjct: 213 K 213
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
E DG G K FV+GG D +K+W Y + TL GH D++R V +
Sbjct: 161 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217
Query: 105 Y---PWIVSASDDQTIRIW 120
++ S S D+T IW
Sbjct: 218 VLLRSYLASVSQDRTCIIW 236
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 55/262 (20%)
Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
+ + S D+TI+I+ + T I LTGH V + HPK ++ S S D V +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
+ A+ +V +P + L ++D G +VV++ +
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPII 142
Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
++ H GVN A++ P V+G D VK+W+ N V TL
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWIL 296
GH + V V + + + S S+D++ +W G +T +E D W
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262
Query: 297 ASHPEMNLLA-AGHDSGMIVFK 317
+ N+LA +G D+ + ++K
Sbjct: 263 SWSLSGNVLALSGGDNKVTLWK 284
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
E DG G K FV+GG D +K+W Y + TL GH D++R V +
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 105 Y---PWIVSASDDQTIRIW 120
++ S S D+T IW
Sbjct: 216 VLLRSYLASVSQDRTCIIW 234
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 55/262 (20%)
Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
+ + S D+TI+I+ + T I LTGH V + HPK ++ S S D V +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
+ A+ +V +P + L ++D G +VV++ +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPII 140
Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
++ H GVN A++ P V+G D VK+W+ N V TL
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWIL 296
GH + V V + + + S S+D++ +W G +T +E D W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 297 ASHPEMNLLA-AGHDSGMIVFK 317
+ N+LA +G D+ + ++K
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWK 282
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
E DG G K FV+GG D +K+W Y + TL GH D++R V +
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 105 Y---PWIVSASDDQTIRIW 120
++ S S D+T IW
Sbjct: 216 VLLRSYLASVSQDRTCIIW 234
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 55/266 (20%)
Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
+ + S D+TI+I+ + T I LTGH V + HPK ++ S S D V +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
+ A+ +V +P + L ++D G +VV++ +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPII 140
Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
++ H GVN A++ P V+G D VK+W+ N V TL
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTGV--QTFRREH---DRFWIL 296
GH + V V + + + S S+D++ +W G +T +E D W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 297 ASHPEMNLLA-AGHDSGMIVFKLERE 321
+ N+LA +G D+ + ++K E
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLE 286
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
E DG G K FV+GG D +K+W Y + TL GH D++R V +
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 105 Y---PWIVSASDDQTIRIW 120
++ S S D+T IW
Sbjct: 216 VLLRSYMASVSQDRTCIIW 234
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 55/266 (20%)
Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
+ + S D+TI+I+ + T I LTGH V + HPK ++ S S D V +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
+ A+ +V +P + L ++D G +VV++ +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD---GKVSVVEFKENGTTSPII 140
Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
++ H GVN A++ P V+G D VK+W+ N V TL
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTGV--QTFRREH---DRFWIL 296
GH + V V + + + S S+D++ +W G +T +E D W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 297 ASHPEMNLLA-AGHDSGMIVFKLERE 321
+ N+LA +G D+ + ++K E
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLE 286
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 93/242 (38%), Gaps = 37/242 (15%)
Query: 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
H+ P+ V ++K L S D VW L TL GH I ++ + V
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ------TVRVWD 163
+ S D +I++W+ + C++ V F P + + A LD ++ +++
Sbjct: 91 TGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFL-AILDNVMKNPGSINIYE 148
Query: 164 IG------ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217
I L K + P I+ ++ G KY++ GH G
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG----------- 197
Query: 218 LIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
K+ + + + +E VD++ H ++S + F +++S D + + D
Sbjct: 198 -----------KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246
Query: 277 VT 278
V+
Sbjct: 247 VS 248
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW-RMNETKAWEVDTLRGHMNNVSCVMFHA 258
L GH+R + ++ L+ S + D +W +N + + TL GH + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---LGTLDGHTGTIWSIDVDC 84
Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287
V+ S D SI++WDV+ V T++
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK 113
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142
H L GH + V+++ E + S S D + +W + + L GH +
Sbjct: 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID 81
Query: 143 FHPKEDLVVSASLDQTVRVWDI 164
V+ S D ++++WD+
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDV 103
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
E DG G K FV+GG D +K+W Y + TL GH D++R V +
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215
Query: 105 Y---PWIVSASDDQTIRIW 120
+ S S D+T IW
Sbjct: 216 VLLRSYXASVSQDRTCIIW 234
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 55/265 (20%)
Query: 109 VSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD- 163
+ S D+TI+I+ + T I LTGH V + HPK ++ S S D V +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKE 84
Query: 164 ---------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------VL 200
+ A+ +V +P + L ++D G +VV++ ++
Sbjct: 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD---GKVSVVEFKENGTTSPIII 141
Query: 201 EGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTLR 245
+ H GVN A++ P V+G D VK+W+ N V TL
Sbjct: 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201
Query: 246 GHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTGV--QTFRREH---DRFWILA 297
GH + V V + + S S+D++ +W G +T +E D W +
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261
Query: 298 SHPEMNLLA-AGHDSGMIVFKLERE 321
N+LA +G D+ + ++K E
Sbjct: 262 WSLSGNVLALSGGDNKVTLWKENLE 286
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
TL GH + + + + + S +D ++IW+ +S T HN V ++ P +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 148 DLVVS---ASLDQTVRVWDIG-ALRKKTVSPADDILRL-------SQMNTDLFG------ 190
+++ ++D+ + W+ R TV + L M+T F
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 191 ---GVDAVVKYV-LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233
+ K V + HD V ++A P ++ + A D +K WR+
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 83/201 (41%), Gaps = 24/201 (11%)
Query: 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154
Y+ +V++ H+ ++ + + I++ +S+T + + GH V C S++ ++ S S
Sbjct: 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGS 193
Query: 155 LDQTVRVWD-------IGALRKKT-----VSPADDILRLSQMNTD----LFGGVDAVVKY 198
+ D IG L+ + ++ D L+L+ D ++ ++ K+
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253
Query: 199 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
H+ + V W + L G D+Q+ W N V+T+ S +
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW--NAATGARVNTVDAGSQVTSLIW 311
Query: 256 F-HAKQDIIVSNSEDKSIRVW 275
H+K+ + D ++ +W
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIW 332
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYKMHRCL--F 87
I +D + G + ++ PV+G F S F + G D I+VW+ +C+ +
Sbjct: 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 290
Query: 88 TL----LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143
TL LG+ + I+S S D T+ + + ++GHN + +
Sbjct: 291 TLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347
Query: 144 HPKEDLVVSASLDQTVRVWDIGALRK 169
+P ++S S D + W ++ +
Sbjct: 348 NP----LISGSYDGRIMEWSSSSMHQ 369
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYKMHRCL--F 87
I +D + G + ++ PV+G F S F + G D I+VW+ +C+ +
Sbjct: 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 290
Query: 88 TL----LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143
TL LG+ + I+S S D T+ + + ++GHN + +
Sbjct: 291 TLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347
Query: 144 HPKEDLVVSASLDQTVRVW 162
+P ++S S D + W
Sbjct: 348 NP----LISGSYDGRIXEW 362
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 71 DDYKIKVWNYKMHRCLFTLL--GHLDYIRTVQF-HHEYPWIVSASDDQTIRIWNWQSRTC 127
+D I +W+ + L GH I ++ + H + ++S+ D T+ +WN +S
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
Query: 128 ISVLTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186
+S ++ F P+ DL AS D + V + L T+ + + + T
Sbjct: 298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESET 356
Query: 187 DLFGGV 192
D + V
Sbjct: 357 DFWNNV 362
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 219 IVSGA-DDRQVKLWRMNETKAWEVDTL---RGHMNNVSCVMFHAKQD-IIVSNSEDKSIR 273
I++GA D+ ++L+ NE ++++ H ++V V F+AKQD ++ S + I
Sbjct: 81 IIAGALDNGSLELYSTNEANN-AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139
Query: 274 VWDVTKRT 281
+WD+ K T
Sbjct: 140 IWDMNKCT 147
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 29/160 (18%)
Query: 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192
H + V ++P + + S+S D+T++VWD L+ D+F
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ----------------TADVFNFE 141
Query: 193 DAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVS 252
+ V + + + L+ G +V+L + + L+GH +
Sbjct: 142 ETVYSHHM---------SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEIL 190
Query: 253 CVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
V + + D I+ + S D +++WDV + +G +H+
Sbjct: 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 11 RVKGLSFHSKRPWILASLHS-GVIQLWDYR--MGTLI--DRFD------------EHDGP 53
+ +S+ + +ILA+ + ++LWD R G LI D+ + H+G
Sbjct: 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247
Query: 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH--------LDYIRTVQFHHEY 105
V G+ F ++ G D ++++WN G L + + E+
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307
Query: 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
++ S TI ++ S I++L GH V C F + S S D + W +
Sbjct: 308 VFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW-VP 363
Query: 166 ALRKKTVSPADDILRLSQMN 185
+L + V D+ SQ+N
Sbjct: 364 SLYEP-VPDDDETTTKSQLN 382
>pdb|1IT9|L Chain L, Crystal Structure Of An Antigen-Binding Fragment From A
Humanized Version Of The Anti-Human Fas Antibody Hfe7a
Length = 214
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 364 LNQSPRTLSYSPTENAVLICS-----DVDGGSY 391
L QSP TLS SP E A L C D DG SY
Sbjct: 4 LTQSPGTLSLSPGERATLSCKASQSVDYDGDSY 36
>pdb|3U7W|L Chain L, Crystal Structure Of Nih45-46 Fab
pdb|3U7Y|L Chain L, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 210
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELY 394
L QSP TLS SP E A++ C GS Y
Sbjct: 4 LTQSPATLSLSPGETAIISCRTSQSGSLAWY 34
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 7/146 (4%)
Query: 31 GVIQLWDYRM---GTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY--KMH 83
G +++WD + + + D D +R + GG+ + +W+
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143
R L + + S D I +W+ ++T + GH C
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191
Query: 144 HPKEDLVVSASLDQTVRVWDIGALRK 169
+ + LD TVR WD+ R+
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQ 217
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 31 GVIQLWDYRMGTL-IDRFDEHDGPVRGVHFHKSQP--LFVSGGD 71
G++ +WD R GT+ + H+ + VHFH S P LF D
Sbjct: 259 GMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSED 302
>pdb|2GHW|B Chain B, Crystal Structure Of Sars Spike Protein Receptor Binding
Domain In Complex With A Neutralizing Antibody, 80r
pdb|2GHW|D Chain D, Crystal Structure Of Sars Spike Protein Receptor Binding
Domain In Complex With A Neutralizing Antibody, 80r
Length = 247
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 362 TSLNQSPRTLSYSPTENAVLIC 383
T+L QSP TLS SP E A L C
Sbjct: 136 TTLTQSPATLSLSPGERATLSC 157
>pdb|3NGB|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|C Chain C, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|F Chain F, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|K Chain K, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
Length = 210
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELY 394
L QSP TLS SP E A++ C GS Y
Sbjct: 4 LTQSPGTLSLSPGETAIISCRTSQYGSLAWY 34
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 27/84 (32%)
Query: 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192
H V A F+P+ D L+ ++S+D TV++WD+ ++ K
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--------------------- 241
Query: 193 DAVVKYVLE-GHDRGVNWAAFHPT 215
Y+ E H++ VN A F+PT
Sbjct: 242 ----SYIAEMPHEKPVNAAYFNPT 261
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 27/84 (32%)
Query: 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192
H V A F+P+ D L+ ++S+D TV++WD+ ++ K
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--------------------- 240
Query: 193 DAVVKYVLE-GHDRGVNWAAFHPT 215
Y+ E H++ VN A F+PT
Sbjct: 241 ----SYIAEMPHEKPVNAAYFNPT 260
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 31 GVIQLWDYRMGTLID--RFDEHDGPVRGVH----FHKSQPLFVSGGDDYKIKVWNYKMHR 84
G+I +WD R LI F +H P+ V + K+ + V G + +WN+
Sbjct: 236 GIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294
Query: 85 CLFTLLG 91
C + +
Sbjct: 295 CQYAFIN 301
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
L+ D+H+G V V ++ + + S GDD K+++W
Sbjct: 296 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 219 IVSGADDRQVKLWRMN-ETKAWEV-DTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRV 274
+ + + D+ +K+++++ +T WE+ D+ R H +++ + + + + II S S DK++++
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 83
Query: 275 WD 276
W+
Sbjct: 84 WE 85
>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
Length = 209
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYV------IPK----DSIGRGDSVQDAKKG 413
L QSP LS SP E A L C GG+ + +P+ D+ R V D G
Sbjct: 4 LTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVG 63
Query: 414 LG-GSAIFIARNRF 426
G G+ F+ N+
Sbjct: 64 SGSGTDFFLTINKL 77
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
L+ D+H+G V V ++ + + S GDD K+++W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 219 IVSGADDRQVKLWRMN-ETKAWEV-DTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRV 274
+ + + D+ +K+++++ +T WE+ D+ R H +++ + + + + II S S DK++++
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 275 WD 276
W+
Sbjct: 86 WE 87
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNW-QSRTCISVLTG 133
++WN +MH+ + V + W + +AS DQT++IW+ Q R S L
Sbjct: 243 ELWNLRMHK---------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 293
Query: 134 --HNHYVMCASFHPKEDLVVSASLDQTVRVW 162
H H V A F P +++ +RV+
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
L+ D+H+G V V ++ + + S GDD K+++W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 219 IVSGADDRQVKLWRMN-ETKAWEV-DTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRV 274
+ + + D+ +K+++++ +T WE+ D+ R H +++ + + + + II S S DK++++
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 275 WD 276
W+
Sbjct: 86 WE 87
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNW-QSRTCISVLTG 133
++WN +MH+ + V + W + +AS DQT++IW+ Q R S L
Sbjct: 242 ELWNLRMHK---------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 134 --HNHYVMCASFHPKEDLVVSASLDQTVRVW 162
H H V A F P +++ +RV+
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNW-QSRTCISVLTG 133
++WN +MH+ + V + W + +AS DQT++IW+ Q R S L
Sbjct: 242 ELWNLRMHK---------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 134 --HNHYVMCASFHPKEDLVVSASLDQTVRVW 162
H H V A F P +++ +RV+
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 716 DKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAER 775
+ +++ + +K V G A D KE V ILES GH+ +A + G+ +A
Sbjct: 12 EPFQRLVAVTALKKVVPGSILEA---ADGKEAVAILESCGHVDIAICDLQMSGMDGLAFL 68
Query: 776 LAAELGDNVPSV 787
A L V SV
Sbjct: 69 RHASLSGKVHSV 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,020,076
Number of Sequences: 62578
Number of extensions: 1064118
Number of successful extensions: 3805
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2435
Number of HSP's gapped (non-prelim): 522
length of query: 916
length of database: 14,973,337
effective HSP length: 108
effective length of query: 808
effective length of database: 8,214,913
effective search space: 6637649704
effective search space used: 6637649704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)