Query 002490
Match_columns 916
No_of_seqs 1124 out of 3809
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0292 Vesicle coat complex C 100.0 2E-175 4E-180 1388.4 79.8 896 1-911 1-902 (1202)
2 KOG0276 Vesicle coat complex C 100.0 3.4E-88 7.5E-93 696.9 66.8 732 3-786 7-778 (794)
3 PF04053 Coatomer_WDAD: Coatom 100.0 2.5E-63 5.5E-68 536.6 38.1 413 338-769 2-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 7.4E-49 1.6E-53 383.7 30.9 329 3-395 109-479 (480)
5 KOG0319 WD40-repeat-containing 100.0 2.9E-45 6.3E-50 387.8 52.2 505 8-546 61-606 (775)
6 KOG0318 WD40 repeat stress pro 100.0 1.7E-44 3.7E-49 367.3 53.5 477 4-519 54-602 (603)
7 KOG0291 WD40-repeat-containing 100.0 2E-42 4.4E-47 366.0 66.3 449 9-523 96-616 (893)
8 KOG0271 Notchless-like WD40 re 100.0 1.1E-45 2.5E-50 361.4 30.4 330 43-440 107-479 (480)
9 KOG0318 WD40 repeat stress pro 100.0 1.6E-41 3.5E-46 345.7 58.7 489 12-546 21-590 (603)
10 KOG0292 Vesicle coat complex C 100.0 1.4E-42 2.9E-47 372.3 52.6 656 1-756 43-781 (1202)
11 KOG0276 Vesicle coat complex C 100.0 4.2E-42 9.1E-47 356.0 48.1 625 1-723 47-758 (794)
12 KOG0306 WD40-repeat-containing 100.0 2.4E-42 5.2E-47 365.3 46.4 475 10-522 66-667 (888)
13 KOG0319 WD40-repeat-containing 100.0 8.9E-43 1.9E-47 368.9 40.9 478 2-517 97-617 (775)
14 KOG0291 WD40-repeat-containing 100.0 3.5E-40 7.6E-45 349.1 53.5 423 2-490 138-622 (893)
15 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-43 2.7E-48 352.2 24.0 274 7-309 173-449 (459)
16 KOG1538 Uncharacterized conser 100.0 3.1E-41 6.8E-46 350.8 35.9 623 11-786 14-690 (1081)
17 KOG0286 G-protein beta subunit 100.0 5.6E-40 1.2E-44 311.2 33.7 279 3-309 49-334 (343)
18 KOG0306 WD40-repeat-containing 100.0 3.5E-37 7.6E-42 326.3 51.7 531 20-594 33-663 (888)
19 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-39 2.6E-44 324.0 24.1 283 49-395 173-458 (459)
20 KOG0279 G protein beta subunit 100.0 3.2E-37 6.9E-42 291.0 32.9 284 3-318 9-312 (315)
21 KOG0295 WD40 repeat-containing 100.0 1E-37 2.3E-42 304.5 24.6 279 2-309 101-395 (406)
22 KOG0279 G protein beta subunit 100.0 2.8E-36 6.1E-41 284.7 33.5 296 42-397 6-313 (315)
23 KOG0286 G-protein beta subunit 100.0 4.7E-36 1E-40 284.7 34.0 287 44-395 48-343 (343)
24 KOG0273 Beta-transducin family 100.0 1.3E-35 2.8E-40 299.0 32.3 324 6-396 175-522 (524)
25 KOG0285 Pleiotropic regulator 100.0 3.4E-36 7.4E-41 292.5 26.4 276 3-309 145-428 (460)
26 KOG0263 Transcription initiati 100.0 3.3E-36 7.2E-41 323.3 27.2 246 6-280 375-651 (707)
27 KOG0315 G-protein beta subunit 100.0 5.7E-35 1.2E-39 270.8 31.5 279 22-354 11-296 (311)
28 KOG0273 Beta-transducin family 100.0 2.8E-35 6.1E-40 296.6 31.4 268 10-309 236-512 (524)
29 KOG0645 WD40 repeat protein [G 100.0 1.6E-34 3.4E-39 271.6 33.9 280 2-313 7-304 (312)
30 KOG2041 WD40 repeat protein [G 100.0 1.5E-33 3.2E-38 295.9 44.4 683 10-786 15-792 (1189)
31 KOG0296 Angio-associated migra 100.0 1.5E-34 3.2E-39 282.8 32.0 312 2-317 57-396 (399)
32 KOG0284 Polyadenylation factor 100.0 1.1E-36 2.4E-41 301.3 17.4 271 10-310 97-370 (464)
33 KOG1408 WD40 repeat protein [F 100.0 1.3E-33 2.9E-38 296.4 40.0 506 5-524 74-718 (1080)
34 KOG0645 WD40 repeat protein [G 100.0 2.7E-33 5.9E-38 263.3 34.5 295 42-397 5-311 (312)
35 cd00200 WD40 WD40 domain, foun 100.0 6.5E-33 1.4E-37 295.0 39.1 282 1-311 1-282 (289)
36 KOG0265 U5 snRNP-specific prot 100.0 1.5E-33 3.3E-38 268.8 28.6 279 4-310 42-328 (338)
37 KOG0315 G-protein beta subunit 100.0 2.7E-33 5.8E-38 259.8 28.8 272 3-298 34-308 (311)
38 KOG0316 Conserved WD40 repeat- 100.0 1.6E-33 3.6E-38 258.9 26.8 283 2-317 10-297 (307)
39 KOG1539 WD repeat protein [Gen 100.0 9.9E-32 2.2E-36 288.7 44.8 490 4-548 109-636 (910)
40 KOG0266 WD40 repeat-containing 100.0 2.4E-33 5.3E-38 313.2 34.1 286 5-317 154-452 (456)
41 KOG1524 WD40 repeat-containing 100.0 4.9E-31 1.1E-35 269.2 47.3 628 6-769 11-698 (737)
42 KOG0285 Pleiotropic regulator 100.0 1.2E-33 2.6E-38 274.8 26.1 301 42-401 142-443 (460)
43 KOG0263 Transcription initiati 100.0 1.8E-33 3.9E-38 302.4 27.8 235 46-309 373-638 (707)
44 KOG2048 WD40 repeat protein [G 100.0 5.9E-30 1.3E-34 269.8 52.0 486 6-523 22-552 (691)
45 KOG0282 mRNA splicing factor [ 100.0 2.2E-34 4.8E-39 291.6 18.0 282 1-309 206-494 (503)
46 KOG0284 Polyadenylation factor 100.0 2.1E-34 4.6E-39 285.2 17.4 286 50-399 95-382 (464)
47 KOG1538 Uncharacterized conser 100.0 1.6E-31 3.4E-36 278.8 38.5 660 1-767 45-799 (1081)
48 KOG0296 Angio-associated migra 100.0 7.8E-32 1.7E-36 263.8 32.7 332 42-442 55-398 (399)
49 KOG0295 WD40 repeat-containing 100.0 4.6E-33 9.9E-38 272.1 23.8 290 42-395 99-404 (406)
50 KOG1539 WD repeat protein [Gen 100.0 2.3E-30 4.9E-35 278.4 44.5 448 12-519 162-648 (910)
51 KOG2106 Uncharacterized conser 100.0 2.6E-30 5.6E-35 262.5 41.6 445 3-518 98-625 (626)
52 KOG0275 Conserved WD40 repeat- 100.0 1.9E-33 4E-38 269.5 15.4 279 7-313 211-502 (508)
53 KOG0265 U5 snRNP-specific prot 100.0 2.3E-31 4.9E-36 254.1 28.4 285 44-393 40-334 (338)
54 KOG0281 Beta-TrCP (transducin 100.0 1.9E-33 4.1E-38 272.0 14.2 271 9-321 197-479 (499)
55 KOG1408 WD40 repeat protein [F 100.0 1E-29 2.2E-34 267.4 40.6 516 14-546 42-700 (1080)
56 KOG1063 RNA polymerase II elon 100.0 2.4E-29 5.3E-34 265.2 41.9 486 2-519 47-763 (764)
57 PLN00181 protein SPA1-RELATED; 100.0 5.7E-30 1.2E-34 308.7 42.4 277 5-310 479-783 (793)
58 KOG0266 WD40 repeat-containing 100.0 1.8E-30 4E-35 290.1 34.4 294 45-397 152-454 (456)
59 KOG0293 WD40 repeat-containing 100.0 2.5E-31 5.5E-36 263.3 23.8 277 3-310 218-503 (519)
60 cd00200 WD40 WD40 domain, foun 100.0 1E-29 2.2E-34 270.4 37.7 288 44-395 2-289 (289)
61 KOG0316 Conserved WD40 repeat- 100.0 2.1E-30 4.6E-35 238.5 26.4 287 43-395 9-297 (307)
62 KOG2106 Uncharacterized conser 100.0 2.5E-28 5.4E-33 248.1 42.3 429 6-479 151-625 (626)
63 KOG0313 Microtubule binding pr 100.0 1.9E-30 4.2E-35 255.2 25.9 278 7-317 103-416 (423)
64 KOG2048 WD40 repeat protein [G 100.0 1.5E-27 3.2E-32 251.7 49.3 453 49-538 23-526 (691)
65 KOG0278 Serine/threonine kinas 100.0 5.5E-31 1.2E-35 244.3 17.2 288 4-350 9-301 (334)
66 KOG0643 Translation initiation 100.0 3.1E-29 6.6E-34 235.3 29.0 280 4-313 5-310 (327)
67 KOG0281 Beta-TrCP (transducin 100.0 1.8E-31 4E-36 258.3 14.0 279 50-401 196-481 (499)
68 KOG1063 RNA polymerase II elon 100.0 8.5E-28 1.8E-32 253.6 41.7 493 16-519 21-699 (764)
69 KOG0282 mRNA splicing factor [ 100.0 1.2E-30 2.6E-35 264.6 19.1 291 42-395 205-503 (503)
70 KOG1407 WD40 repeat protein [F 100.0 4.2E-29 9.2E-34 233.7 27.2 278 3-312 14-294 (313)
71 KOG0293 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 251.5 24.2 290 44-398 217-514 (519)
72 PLN00181 protein SPA1-RELATED; 100.0 4.1E-28 8.8E-33 292.6 42.8 305 30-396 457-792 (793)
73 KOG1407 WD40 repeat protein [F 100.0 7.6E-29 1.6E-33 232.1 27.7 287 45-396 14-310 (313)
74 KOG2041 WD40 repeat protein [G 100.0 1.1E-28 2.3E-33 259.6 30.7 708 1-782 63-906 (1189)
75 KOG0643 Translation initiation 100.0 1.2E-28 2.5E-33 231.5 27.4 309 47-399 6-319 (327)
76 KOG1274 WD40 repeat protein [G 100.0 2.8E-25 6.1E-30 242.3 57.2 274 6-307 10-287 (933)
77 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-27 2.4E-32 231.8 34.2 280 3-309 8-294 (311)
78 KOG0310 Conserved WD40 repeat- 100.0 5E-29 1.1E-33 253.5 25.7 277 9-315 26-304 (487)
79 KOG0278 Serine/threonine kinas 100.0 5.3E-29 1.1E-33 231.2 19.2 293 43-401 6-301 (334)
80 KOG0274 Cdc4 and related F-box 100.0 1.2E-27 2.6E-32 265.3 30.8 281 8-354 207-490 (537)
81 KOG0283 WD40 repeat-containing 100.0 3.4E-28 7.4E-33 264.4 25.5 254 2-279 259-577 (712)
82 KOG0308 Conserved WD40 repeat- 100.0 6.5E-29 1.4E-33 260.1 19.0 360 56-489 29-402 (735)
83 KOG0275 Conserved WD40 repeat- 100.0 7.5E-29 1.6E-33 238.0 17.6 284 49-395 211-507 (508)
84 PTZ00421 coronin; Provisional 100.0 9E-27 1.9E-31 258.6 36.6 266 8-301 19-314 (493)
85 KOG0772 Uncharacterized conser 100.0 1E-27 2.3E-32 244.2 25.6 285 4-313 162-480 (641)
86 KOG0300 WD40 repeat-containing 100.0 5.4E-28 1.2E-32 231.6 21.9 291 1-320 140-477 (481)
87 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-26 6.8E-31 221.7 34.2 292 41-397 4-303 (311)
88 KOG3617 WD40 and TPR repeat-co 100.0 5E-27 1.1E-31 251.3 30.3 725 13-782 19-1021(1416)
89 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.4E-33 245.3 16.4 275 3-310 169-451 (459)
90 KOG0973 Histone transcription 100.0 2E-27 4.3E-32 264.8 28.1 291 8-321 12-357 (942)
91 KOG0313 Microtubule binding pr 100.0 2.4E-27 5.1E-32 233.5 24.3 249 2-278 137-418 (423)
92 KOG0277 Peroxisomal targeting 100.0 7.1E-28 1.5E-32 224.6 18.7 242 9-277 60-308 (311)
93 KOG0299 U3 snoRNP-associated p 100.0 3.4E-27 7.3E-32 238.3 24.9 277 3-309 136-444 (479)
94 KOG0647 mRNA export protein (c 100.0 7.3E-27 1.6E-31 223.4 25.7 273 8-309 26-312 (347)
95 KOG0277 Peroxisomal targeting 100.0 3.4E-27 7.5E-32 220.1 22.1 268 13-308 12-297 (311)
96 KOG0640 mRNA cleavage stimulat 100.0 2.9E-27 6.3E-32 226.1 22.0 291 45-396 106-425 (430)
97 KOG0300 WD40 repeat-containing 100.0 4.4E-27 9.5E-32 225.4 22.8 297 42-398 139-477 (481)
98 KOG0289 mRNA splicing factor [ 100.0 1.4E-26 3E-31 231.5 27.2 275 10-312 220-498 (506)
99 KOG0294 WD40 repeat-containing 100.0 2E-26 4.3E-31 221.8 27.1 243 3-280 37-283 (362)
100 KOG0308 Conserved WD40 repeat- 100.0 1.1E-27 2.4E-32 251.0 20.1 258 14-300 29-307 (735)
101 PTZ00421 coronin; Provisional 100.0 6.9E-26 1.5E-30 251.5 35.7 230 4-260 70-315 (493)
102 KOG0283 WD40 repeat-containing 100.0 4.1E-27 8.9E-32 256.1 25.0 237 43-309 258-565 (712)
103 KOG0305 Anaphase promoting com 100.0 1.3E-26 2.9E-31 246.4 28.2 261 15-309 183-450 (484)
104 KOG0641 WD40 repeat protein [G 100.0 2.2E-25 4.8E-30 203.8 32.1 283 8-316 31-346 (350)
105 PTZ00420 coronin; Provisional 100.0 1.6E-25 3.4E-30 249.2 37.6 247 27-302 50-318 (568)
106 KOG0289 mRNA splicing factor [ 100.0 1.1E-26 2.4E-31 232.2 25.0 251 1-277 253-505 (506)
107 KOG0274 Cdc4 and related F-box 100.0 1.3E-26 2.8E-31 257.1 28.1 248 2-286 242-490 (537)
108 KOG0301 Phospholipase A2-activ 100.0 1.1E-26 2.3E-31 245.5 25.8 282 2-323 7-292 (745)
109 KOG0268 Sof1-like rRNA process 100.0 9.2E-28 2E-32 234.7 15.4 275 2-311 59-336 (433)
110 KOG0310 Conserved WD40 repeat- 100.0 1.2E-26 2.6E-31 236.2 23.5 240 5-275 64-306 (487)
111 KOG0640 mRNA cleavage stimulat 100.0 1.1E-26 2.5E-31 222.1 21.8 280 4-311 107-417 (430)
112 PTZ00420 coronin; Provisional 99.9 2.8E-25 6.1E-30 247.1 33.6 232 3-260 68-318 (568)
113 KOG0973 Histone transcription 99.9 6.9E-26 1.5E-30 252.7 28.4 298 50-401 12-359 (942)
114 KOG0288 WD40 repeat protein Ti 99.9 3.7E-27 8.1E-32 234.5 16.2 287 42-394 166-458 (459)
115 KOG0299 U3 snoRNP-associated p 99.9 2E-25 4.2E-30 225.6 27.6 281 44-387 135-447 (479)
116 KOG1036 Mitotic spindle checkp 99.9 5.9E-25 1.3E-29 211.6 27.8 271 9-310 13-294 (323)
117 KOG0305 Anaphase promoting com 99.9 2.8E-25 6E-30 236.4 27.9 281 97-444 181-463 (484)
118 KOG0772 Uncharacterized conser 99.9 2.2E-25 4.8E-30 227.4 25.4 300 44-396 160-486 (641)
119 KOG0294 WD40 repeat-containing 99.9 2.3E-24 4.9E-29 207.6 29.5 252 23-309 3-270 (362)
120 KOG2096 WD40 repeat protein [G 99.9 1.6E-24 3.4E-29 208.5 26.3 295 2-317 79-400 (420)
121 KOG0641 WD40 repeat protein [G 99.9 1E-23 2.2E-28 193.0 27.3 247 4-278 84-349 (350)
122 KOG2096 WD40 repeat protein [G 99.9 5.8E-24 1.3E-28 204.6 26.0 309 33-440 63-400 (420)
123 KOG1332 Vesicle coat complex C 99.9 4.9E-25 1.1E-29 204.6 17.5 247 48-318 8-285 (299)
124 KOG1332 Vesicle coat complex C 99.9 7.9E-25 1.7E-29 203.3 18.0 248 6-278 8-286 (299)
125 KOG0264 Nucleosome remodeling 99.9 1.6E-24 3.4E-29 219.5 21.4 246 7-278 122-404 (422)
126 KOG2055 WD40 repeat protein [G 99.9 6.1E-24 1.3E-28 214.6 25.1 291 93-442 213-512 (514)
127 KOG1524 WD40 repeat-containing 99.9 4.2E-22 9E-27 204.3 38.4 562 22-722 76-693 (737)
128 KOG0639 Transducin-like enhanc 99.9 2.1E-24 4.5E-29 219.2 21.4 277 7-316 417-701 (705)
129 KOG0301 Phospholipase A2-activ 99.9 1E-23 2.3E-28 223.1 27.2 283 41-399 4-290 (745)
130 KOG1445 Tumor-specific antigen 99.9 1.9E-23 4.2E-28 217.6 27.2 485 3-519 73-798 (1012)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-22 9.5E-27 213.9 38.8 287 22-375 2-300 (300)
132 KOG0647 mRNA export protein (c 99.9 3.1E-23 6.8E-28 198.7 26.0 273 49-385 25-313 (347)
133 KOG0268 Sof1-like rRNA process 99.9 1.4E-24 3.1E-29 212.5 16.3 285 44-398 59-346 (433)
134 KOG4283 Transcription-coupled 99.9 3.5E-23 7.5E-28 197.1 24.1 289 7-309 41-354 (397)
135 KOG1963 WD40 repeat protein [G 99.9 5.3E-21 1.1E-25 209.2 43.0 450 14-520 21-539 (792)
136 KOG2055 WD40 repeat protein [G 99.9 5.8E-23 1.3E-27 207.6 25.7 283 9-318 213-511 (514)
137 KOG0646 WD40 repeat protein [G 99.9 2.8E-23 6E-28 210.7 20.8 251 23-301 52-330 (476)
138 KOG0267 Microtubule severing p 99.9 1.1E-24 2.4E-29 231.1 9.6 260 20-314 3-262 (825)
139 KOG0267 Microtubule severing p 99.9 1.1E-24 2.4E-29 231.2 9.3 238 3-269 22-259 (825)
140 KOG0646 WD40 repeat protein [G 99.9 1.3E-22 2.7E-27 205.9 22.9 294 30-378 17-332 (476)
141 KOG1036 Mitotic spindle checkp 99.9 1E-21 2.3E-26 189.4 27.3 270 50-385 12-294 (323)
142 KOG0269 WD40 repeat-containing 99.9 1.4E-23 3E-28 224.8 14.9 242 12-280 90-342 (839)
143 KOG4328 WD40 protein [Function 99.9 2.7E-22 5.8E-27 202.7 23.1 289 3-316 180-490 (498)
144 KOG0264 Nucleosome remodeling 99.9 2.7E-22 5.8E-27 203.5 23.2 234 49-308 122-391 (422)
145 KOG1273 WD40 repeat protein [G 99.9 1.9E-21 4.1E-26 187.2 26.9 280 12-320 26-323 (405)
146 KOG0650 WD40 repeat nucleolar 99.9 4.6E-22 1E-26 206.9 24.1 276 4-309 395-724 (733)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-20 4.6E-25 200.8 36.9 271 63-400 1-282 (300)
148 KOG1963 WD40 repeat protein [G 99.9 7.1E-20 1.5E-24 200.4 38.7 434 2-489 50-592 (792)
149 COG2319 FOG: WD40 repeat [Gene 99.9 6.1E-19 1.3E-23 199.6 48.3 374 4-443 60-443 (466)
150 KOG1273 WD40 repeat protein [G 99.9 2.6E-21 5.7E-26 186.3 23.6 286 54-399 26-324 (405)
151 KOG0269 WD40 repeat-containing 99.9 2.8E-22 6.1E-27 214.9 18.7 276 11-314 41-334 (839)
152 KOG0321 WD40 repeat-containing 99.9 2.3E-21 5.1E-26 203.4 24.7 297 8-320 46-392 (720)
153 KOG1445 Tumor-specific antigen 99.9 4.6E-20 9.9E-25 192.6 34.0 436 84-547 70-782 (1012)
154 KOG2445 Nuclear pore complex c 99.9 6E-21 1.3E-25 183.5 25.2 249 6-278 10-318 (361)
155 KOG0650 WD40 repeat nucleolar 99.9 7.6E-21 1.6E-25 197.9 26.6 295 44-395 393-733 (733)
156 KOG1274 WD40 repeat protein [G 99.9 1.6E-20 3.6E-25 205.4 29.4 230 49-309 11-251 (933)
157 KOG0302 Ribosome Assembly prot 99.9 5.9E-21 1.3E-25 188.3 22.0 244 49-317 149-436 (440)
158 KOG0639 Transducin-like enhanc 99.9 2.7E-21 5.9E-26 196.7 20.3 284 133-479 417-703 (705)
159 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.4E-25 191.1 24.0 299 39-396 174-494 (498)
160 KOG1034 Transcriptional repres 99.9 3.8E-20 8.2E-25 179.6 24.0 305 5-312 34-375 (385)
161 KOG2445 Nuclear pore complex c 99.9 1.1E-19 2.4E-24 175.0 26.9 249 48-311 10-309 (361)
162 KOG0270 WD40 repeat-containing 99.9 1.3E-20 2.8E-25 190.2 19.0 238 20-283 191-454 (463)
163 KOG2919 Guanine nucleotide-bin 99.9 1E-19 2.3E-24 176.0 23.1 271 11-310 51-360 (406)
164 KOG0302 Ribosome Assembly prot 99.9 5.5E-20 1.2E-24 181.6 21.3 244 6-275 148-435 (440)
165 COG2319 FOG: WD40 repeat [Gene 99.9 3.6E-17 7.8E-22 185.1 47.9 369 46-481 60-443 (466)
166 KOG4378 Nuclear protein COP1 [ 99.8 6.7E-20 1.5E-24 186.5 20.5 259 11-302 36-305 (673)
167 KOG1009 Chromatin assembly com 99.8 5.2E-19 1.1E-23 176.7 25.0 296 10-313 14-365 (434)
168 KOG0321 WD40 repeat-containing 99.8 1.3E-19 2.9E-24 190.4 20.6 254 2-281 93-394 (720)
169 KOG4378 Nuclear protein COP1 [ 99.8 2.3E-19 4.9E-24 182.7 21.5 290 26-377 7-305 (673)
170 KOG0642 Cell-cycle nuclear pro 99.8 3.1E-20 6.7E-25 193.0 14.4 261 4-289 289-572 (577)
171 KOG4283 Transcription-coupled 99.8 6.3E-19 1.4E-23 168.3 21.9 247 6-277 98-364 (397)
172 KOG1034 Transcriptional repres 99.8 5.8E-19 1.3E-23 171.5 21.7 291 48-396 35-382 (385)
173 KOG0307 Vesicle coat complex C 99.8 2.3E-20 5E-25 209.7 12.6 245 9-281 64-330 (1049)
174 KOG0270 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 174.7 23.3 267 14-309 130-438 (463)
175 KOG0644 Uncharacterized conser 99.8 2.6E-20 5.6E-25 200.6 10.4 281 1-320 182-469 (1113)
176 KOG1009 Chromatin assembly com 99.8 1.7E-17 3.6E-22 166.1 27.7 331 135-519 13-372 (434)
177 KOG0307 Vesicle coat complex C 99.8 1.7E-19 3.8E-24 202.7 14.1 272 11-309 8-316 (1049)
178 KOG2919 Guanine nucleotide-bin 99.8 1.3E-17 2.7E-22 161.7 23.9 276 54-385 52-360 (406)
179 KOG4497 Uncharacterized conser 99.8 7.8E-18 1.7E-22 163.3 21.7 368 14-434 13-424 (447)
180 PF04762 IKI3: IKI3 family; I 99.8 2.6E-13 5.7E-18 161.7 64.9 564 8-621 74-721 (928)
181 KOG3617 WD40 and TPR repeat-co 99.8 3.1E-16 6.8E-21 169.3 34.9 741 11-781 61-1075(1416)
182 KOG0322 G-protein beta subunit 99.8 2.4E-18 5.2E-23 162.2 16.1 247 4-277 9-322 (323)
183 KOG1007 WD repeat protein TSSC 99.8 1.8E-17 3.9E-22 158.2 21.0 259 20-307 25-347 (370)
184 KOG0303 Actin-binding protein 99.8 1.3E-17 2.8E-22 165.8 20.4 230 4-260 76-321 (472)
185 KOG1007 WD repeat protein TSSC 99.8 1.5E-17 3.3E-22 158.6 19.4 248 3-278 57-361 (370)
186 KOG1912 WD40 repeat protein [G 99.8 1.5E-14 3.3E-19 155.6 43.3 421 10-443 16-552 (1062)
187 KOG4227 WD40 repeat protein [G 99.8 7.5E-17 1.6E-21 159.6 22.6 283 4-309 51-376 (609)
188 KOG4497 Uncharacterized conser 99.8 5.9E-17 1.3E-21 157.3 21.1 402 56-518 13-430 (447)
189 KOG0649 WD40 repeat protein [G 99.8 6.7E-16 1.4E-20 144.0 27.2 261 10-300 11-295 (325)
190 KOG0303 Actin-binding protein 99.8 1.2E-16 2.7E-21 159.0 23.7 243 11-282 29-298 (472)
191 KOG0644 Uncharacterized conser 99.8 8E-19 1.7E-23 189.3 8.2 272 42-348 181-470 (1113)
192 KOG0290 Conserved WD40 repeat- 99.8 1.8E-16 3.9E-21 151.6 23.1 276 11-314 46-360 (364)
193 KOG1517 Guanine nucleotide bin 99.8 1.5E-16 3.3E-21 176.2 25.4 278 8-311 1063-1372(1387)
194 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-17 3.5E-22 172.9 16.5 238 46-309 289-550 (577)
195 KOG1188 WD40 repeat protein [G 99.7 1E-16 2.3E-21 156.9 20.0 289 106-442 41-346 (376)
196 KOG1188 WD40 repeat protein [G 99.7 3.1E-17 6.8E-22 160.6 15.8 146 22-167 41-198 (376)
197 KOG0649 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 142.1 25.4 246 95-398 12-275 (325)
198 KOG4227 WD40 repeat protein [G 99.7 2.2E-16 4.7E-21 156.4 20.7 259 86-400 49-325 (609)
199 KOG1587 Cytoplasmic dynein int 99.7 4E-16 8.6E-21 172.0 23.4 245 9-279 242-517 (555)
200 PRK11028 6-phosphogluconolacto 99.7 1.7E-14 3.7E-19 156.5 35.9 260 25-309 6-292 (330)
201 KOG1523 Actin-related protein 99.7 6.6E-16 1.4E-20 150.1 21.6 249 47-318 6-277 (361)
202 KOG2110 Uncharacterized conser 99.7 9.8E-15 2.1E-19 144.9 30.3 313 51-404 5-337 (391)
203 KOG1334 WD40 repeat protein [G 99.7 6E-17 1.3E-21 165.5 13.9 300 2-316 135-463 (559)
204 PRK11028 6-phosphogluconolacto 99.7 6.8E-14 1.5E-18 151.8 37.2 276 66-399 5-306 (330)
205 KOG1517 Guanine nucleotide bin 99.7 5.2E-15 1.1E-19 164.3 27.1 291 53-399 1066-1383(1387)
206 KOG1587 Cytoplasmic dynein int 99.7 9.7E-15 2.1E-19 161.2 28.7 279 73-399 222-518 (555)
207 KOG0322 G-protein beta subunit 99.7 8.7E-16 1.9E-20 145.1 17.4 248 43-309 6-312 (323)
208 PRK01742 tolB translocation pr 99.7 2.1E-15 4.6E-20 168.6 23.0 233 30-301 183-426 (429)
209 KOG0771 Prolactin regulatory e 99.7 4.2E-16 9.2E-21 157.5 14.8 196 13-235 148-355 (398)
210 KOG1523 Actin-related protein 99.7 3.4E-15 7.4E-20 145.2 19.6 253 4-269 5-269 (361)
211 KOG1272 WD40-repeat-containing 99.7 2.4E-16 5.2E-21 160.2 10.9 269 11-315 131-404 (545)
212 PF02239 Cytochrom_D1: Cytochr 99.7 3.2E-13 7E-18 145.7 35.8 318 22-398 6-348 (369)
213 KOG1240 Protein kinase contain 99.7 1.2E-14 2.7E-19 164.1 24.4 227 36-289 1034-1284(1431)
214 KOG1310 WD40 repeat protein [G 99.7 9.6E-16 2.1E-20 158.5 13.7 228 3-238 44-307 (758)
215 KOG1920 IkappaB kinase complex 99.6 2E-11 4.2E-16 139.2 48.2 303 9-347 68-393 (1265)
216 PF02239 Cytochrom_D1: Cytochr 99.6 6E-13 1.3E-17 143.6 34.4 334 66-450 9-356 (369)
217 KOG2139 WD40 repeat protein [G 99.6 1.2E-13 2.5E-18 136.5 26.0 312 10-396 99-430 (445)
218 PRK01742 tolB translocation pr 99.6 1.1E-14 2.3E-19 163.0 21.1 217 4-259 198-426 (429)
219 KOG0290 Conserved WD40 repeat- 99.6 2.2E-14 4.7E-19 137.6 19.8 233 7-268 94-356 (364)
220 KOG1240 Protein kinase contain 99.6 4.6E-14 9.9E-19 159.6 25.6 256 1-282 1040-1338(1431)
221 KOG1912 WD40 repeat protein [G 99.6 1.6E-13 3.5E-18 147.8 28.4 465 2-489 48-708 (1062)
222 KOG2110 Uncharacterized conser 99.6 1.9E-13 4.1E-18 135.9 26.8 239 7-281 3-251 (391)
223 KOG0771 Prolactin regulatory e 99.6 5.3E-15 1.2E-19 149.7 14.7 201 55-279 148-355 (398)
224 KOG1310 WD40 repeat protein [G 99.6 5.8E-15 1.3E-19 152.8 14.9 227 43-286 42-311 (758)
225 COG4946 Uncharacterized protei 99.6 2.4E-11 5.3E-16 124.3 40.4 152 201-385 356-508 (668)
226 KOG2315 Predicted translation 99.6 4.5E-13 9.8E-18 140.4 27.4 322 204-539 34-410 (566)
227 KOG2111 Uncharacterized conser 99.6 5.9E-12 1.3E-16 123.0 32.8 240 53-322 7-259 (346)
228 KOG2111 Uncharacterized conser 99.6 2.8E-12 6E-17 125.3 30.4 237 10-280 6-258 (346)
229 PRK03629 tolB translocation pr 99.6 6.5E-13 1.4E-17 148.2 29.9 234 31-300 179-427 (429)
230 KOG2139 WD40 repeat protein [G 99.6 4.8E-13 1E-17 132.3 24.7 318 93-442 98-431 (445)
231 KOG1272 WD40-repeat-containing 99.6 4.2E-15 9E-20 151.2 9.7 228 54-316 132-359 (545)
232 COG5354 Uncharacterized protei 99.6 3.4E-12 7.5E-17 132.1 30.1 361 118-548 15-418 (561)
233 PRK04922 tolB translocation pr 99.6 8.2E-13 1.8E-17 148.2 27.9 234 31-300 184-432 (433)
234 KOG3616 Selective LIM binding 99.6 1E-12 2.2E-17 140.8 26.1 241 446-771 331-587 (1636)
235 PRK05137 tolB translocation pr 99.6 1.9E-12 4E-17 145.5 29.8 233 31-300 182-432 (435)
236 KOG2314 Translation initiation 99.6 6.1E-12 1.3E-16 131.1 30.7 339 75-469 192-554 (698)
237 PF04762 IKI3: IKI3 family; I 99.6 5.9E-09 1.3E-13 124.9 59.9 454 52-520 22-565 (928)
238 PRK02889 tolB translocation pr 99.6 1E-12 2.2E-17 146.9 26.1 235 31-301 176-425 (427)
239 PRK03629 tolB translocation pr 99.5 1.3E-12 2.7E-17 145.8 26.6 220 5-259 194-428 (429)
240 COG5354 Uncharacterized protei 99.5 6.8E-12 1.5E-16 129.9 29.2 361 76-507 15-416 (561)
241 KOG2314 Translation initiation 99.5 8.4E-12 1.8E-16 130.1 28.1 313 54-432 213-557 (698)
242 KOG3881 Uncharacterized conser 99.5 1.5E-12 3.2E-17 130.5 21.7 263 8-301 54-342 (412)
243 KOG0974 WD-repeat protein WDR6 99.5 6.7E-11 1.4E-15 133.1 36.5 199 9-237 87-291 (967)
244 KOG1354 Serine/threonine prote 99.5 1.6E-12 3.5E-17 127.8 20.7 258 9-280 25-361 (433)
245 KOG2321 WD40 repeat protein [G 99.5 2.8E-12 6.1E-17 134.2 23.7 279 7-312 49-335 (703)
246 PRK04922 tolB translocation pr 99.5 2.1E-12 4.5E-17 144.9 24.9 221 3-258 197-432 (433)
247 KOG2315 Predicted translation 99.5 2.9E-11 6.3E-16 127.0 30.9 325 9-400 34-393 (566)
248 KOG2394 WD40 protein DMR-N9 [G 99.5 7.9E-13 1.7E-17 137.2 19.0 218 11-258 125-384 (636)
249 PRK05137 tolB translocation pr 99.5 4.4E-12 9.6E-17 142.5 26.6 221 3-259 195-433 (435)
250 PRK02889 tolB translocation pr 99.5 2E-12 4.3E-17 144.5 23.3 221 4-259 190-425 (427)
251 KOG0974 WD-repeat protein WDR6 99.5 2.4E-11 5.2E-16 136.6 30.0 237 10-280 8-290 (967)
252 KOG3881 Uncharacterized conser 99.5 3.5E-12 7.5E-17 127.9 20.1 221 7-259 103-342 (412)
253 KOG2394 WD40 protein DMR-N9 [G 99.5 4.8E-13 1E-17 138.8 14.4 137 9-145 219-384 (636)
254 KOG1334 WD40 repeat protein [G 99.5 5.4E-13 1.2E-17 137.0 14.4 310 86-443 135-467 (559)
255 KOG2114 Vacuolar assembly/sort 99.5 1.6E-10 3.5E-15 127.3 34.1 420 255-777 30-499 (933)
256 COG4946 Uncharacterized protei 99.5 1.2E-09 2.7E-14 112.0 37.6 216 324-548 273-507 (668)
257 PF08662 eIF2A: Eukaryotic tra 99.5 7.8E-12 1.7E-16 122.4 21.1 150 13-167 9-181 (194)
258 PF10282 Lactonase: Lactonase, 99.5 5.2E-10 1.1E-14 121.4 36.7 282 219-529 2-334 (345)
259 PF10282 Lactonase: Lactonase, 99.4 1.7E-09 3.7E-14 117.3 40.2 265 203-498 35-345 (345)
260 KOG2321 WD40 repeat protein [G 99.4 3.2E-11 6.9E-16 126.4 24.9 281 49-396 49-342 (703)
261 PF08662 eIF2A: Eukaryotic tra 99.4 2.1E-11 4.5E-16 119.4 20.0 155 368-524 8-184 (194)
262 PF04053 Coatomer_WDAD: Coatom 99.4 8.5E-12 1.8E-16 136.2 18.3 350 291-723 33-439 (443)
263 COG2706 3-carboxymuconate cycl 99.4 1.4E-09 3.1E-14 109.3 31.9 278 225-528 15-332 (346)
264 TIGR02800 propeller_TolB tol-p 99.4 1.4E-10 3E-15 130.7 28.4 221 31-287 170-405 (417)
265 KOG1409 Uncharacterized conser 99.4 2.3E-11 5.1E-16 119.9 18.2 251 1-280 16-272 (404)
266 PRK00178 tolB translocation pr 99.4 2.2E-10 4.7E-15 129.2 28.5 234 32-301 180-428 (430)
267 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.2E-09 1.1E-13 110.1 36.6 277 20-354 11-338 (352)
268 PRK04792 tolB translocation pr 99.4 2.2E-10 4.7E-15 128.5 27.3 233 32-300 199-446 (448)
269 PRK00178 tolB translocation pr 99.3 2.1E-10 4.5E-15 129.3 26.3 221 4-259 193-428 (430)
270 TIGR02800 propeller_TolB tol-p 99.3 1.8E-10 3.8E-15 129.9 25.3 200 4-235 184-398 (417)
271 COG2706 3-carboxymuconate cycl 99.3 1.2E-08 2.7E-13 102.6 34.1 274 72-400 15-324 (346)
272 PRK01029 tolB translocation pr 99.3 6.4E-10 1.4E-14 123.6 26.6 224 5-260 180-426 (428)
273 KOG1354 Serine/threonine prote 99.3 3.1E-10 6.8E-15 111.9 20.9 257 92-349 24-362 (433)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.7E-08 5.8E-13 104.8 36.7 243 212-489 53-339 (352)
275 PRK04792 tolB translocation pr 99.3 4.8E-10 1E-14 125.7 25.0 217 7-258 215-446 (448)
276 PRK01029 tolB translocation pr 99.3 1E-09 2.2E-14 122.0 27.2 239 31-301 165-425 (428)
277 KOG1409 Uncharacterized conser 99.2 6.3E-10 1.4E-14 109.9 18.6 199 9-236 68-272 (404)
278 KOG4547 WD40 repeat-containing 99.2 3.1E-09 6.7E-14 113.0 24.2 188 60-278 2-220 (541)
279 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.1E-14 114.6 22.3 189 18-235 2-221 (541)
280 KOG1064 RAVE (regulator of V-A 99.2 1.6E-10 3.4E-15 135.8 14.1 201 49-290 2206-2410(2439)
281 KOG1064 RAVE (regulator of V-A 99.2 1.8E-10 3.8E-15 135.4 13.4 192 7-238 2206-2402(2439)
282 KOG0280 Uncharacterized conser 99.2 5E-09 1.1E-13 101.6 20.2 242 10-278 70-333 (339)
283 PLN02919 haloacid dehalogenase 99.1 6.6E-08 1.4E-12 118.5 34.4 258 13-282 571-892 (1057)
284 KOG2114 Vacuolar assembly/sort 99.1 4.5E-07 9.9E-12 100.7 35.1 196 210-443 29-244 (933)
285 KOG0280 Uncharacterized conser 99.1 6.1E-08 1.3E-12 94.2 23.4 252 29-308 44-319 (339)
286 KOG4532 WD40-like repeat conta 99.1 8.9E-08 1.9E-12 91.8 23.6 232 29-291 50-295 (344)
287 TIGR03300 assembly_YfgL outer 99.0 2.6E-07 5.7E-12 102.3 31.0 263 20-293 64-353 (377)
288 PLN02919 haloacid dehalogenase 99.0 2E-06 4.4E-11 105.6 40.0 260 55-355 571-897 (1057)
289 KOG4190 Uncharacterized conser 99.0 1.1E-09 2.3E-14 114.1 9.5 215 44-287 728-957 (1034)
290 COG5170 CDC55 Serine/threonine 99.0 1.6E-08 3.4E-13 98.6 15.9 255 9-277 26-366 (460)
291 KOG4532 WD40-like repeat conta 99.0 1.4E-07 3E-12 90.5 21.3 244 13-279 71-332 (344)
292 KOG4190 Uncharacterized conser 99.0 2.3E-09 5E-14 111.7 10.1 278 2-313 728-1029(1034)
293 PF15492 Nbas_N: Neuroblastoma 99.0 1.1E-06 2.4E-11 86.2 27.8 233 15-288 3-269 (282)
294 PRK04043 tolB translocation pr 99.0 3.9E-07 8.3E-12 100.7 27.9 213 226-481 169-401 (419)
295 PRK04043 tolB translocation pr 99.0 8E-07 1.7E-11 98.2 30.4 211 31-279 169-401 (419)
296 KOG2066 Vacuolar assembly/sort 98.9 1.2E-06 2.6E-11 96.9 29.5 187 136-397 40-233 (846)
297 KOG0309 Conserved WD40 repeat- 98.9 1E-08 2.2E-13 110.8 13.4 262 10-300 25-309 (1081)
298 KOG3914 WD repeat protein WDR4 98.9 1.8E-08 3.9E-13 102.4 14.2 160 11-172 64-230 (390)
299 KOG0309 Conserved WD40 repeat- 98.9 8.3E-09 1.8E-13 111.5 11.8 241 12-279 70-340 (1081)
300 PF08450 SGL: SMP-30/Gluconola 98.9 6.3E-06 1.4E-10 85.1 32.6 224 14-267 4-244 (246)
301 PF08450 SGL: SMP-30/Gluconola 98.9 8.8E-06 1.9E-10 84.1 32.9 218 56-308 4-243 (246)
302 KOG1832 HIV-1 Vpr-binding prot 98.9 2.2E-09 4.7E-14 117.9 5.6 259 2-307 1094-1376(1516)
303 KOG1832 HIV-1 Vpr-binding prot 98.8 3.9E-09 8.3E-14 116.1 6.2 282 42-385 1092-1379(1516)
304 TIGR03300 assembly_YfgL outer 98.8 9.9E-06 2.1E-10 89.7 32.4 263 63-357 65-349 (377)
305 PF11768 DUF3312: Protein of u 98.8 0.00013 2.9E-09 79.1 37.9 249 409-695 256-545 (545)
306 KOG0882 Cyclophilin-related pe 98.8 1.7E-07 3.7E-12 96.2 15.2 264 8-287 8-314 (558)
307 PF07433 DUF1513: Protein of u 98.8 9.6E-06 2.1E-10 82.4 27.4 235 10-272 5-279 (305)
308 PF07433 DUF1513: Protein of u 98.7 7.6E-06 1.7E-10 83.2 26.1 258 208-513 8-279 (305)
309 KOG1920 IkappaB kinase complex 98.7 4.7E-05 1E-09 88.5 34.1 309 136-519 69-392 (1265)
310 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.3E-10 83.1 27.0 229 30-285 2-237 (238)
311 PF15492 Nbas_N: Neuroblastoma 98.7 1.9E-05 4.1E-10 77.8 26.2 146 57-224 3-167 (282)
312 PF06957 COPI_C: Coatomer (COP 98.7 3.6E-09 7.7E-14 112.2 0.0 96 815-911 1-113 (422)
313 KOG2066 Vacuolar assembly/sort 98.7 6.6E-07 1.4E-11 98.8 16.9 187 10-234 40-233 (846)
314 KOG3914 WD repeat protein WDR4 98.6 3E-07 6.5E-12 93.7 12.7 156 54-238 65-227 (390)
315 KOG0882 Cyclophilin-related pe 98.6 3.4E-07 7.4E-12 94.1 13.1 211 49-287 7-240 (558)
316 COG5170 CDC55 Serine/threonine 98.6 5.7E-07 1.2E-11 88.0 13.2 247 204-453 26-322 (460)
317 KOG4649 PQQ (pyrrolo-quinoline 98.6 5.3E-05 1.1E-09 73.0 25.8 148 147-326 23-183 (354)
318 PRK11138 outer membrane biogen 98.6 5E-05 1.1E-09 84.5 28.6 260 20-289 68-364 (394)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 8.4E-05 1.8E-09 81.1 29.8 315 102-469 1-344 (353)
320 KOG4714 Nucleoporin [Nuclear s 98.5 8.3E-07 1.8E-11 85.0 11.3 148 18-166 98-255 (319)
321 PRK02888 nitrous-oxide reducta 98.5 1.3E-05 2.9E-10 88.9 22.2 303 149-469 68-448 (635)
322 KOG4714 Nucleoporin [Nuclear s 98.5 1.9E-06 4.1E-11 82.6 13.5 196 12-235 39-255 (319)
323 KOG2695 WD40 repeat protein [G 98.5 2.9E-07 6.4E-12 91.5 7.9 146 26-174 229-385 (425)
324 PF00400 WD40: WD domain, G-be 98.5 4E-07 8.7E-12 63.1 6.5 39 41-79 1-39 (39)
325 KOG1897 Damage-specific DNA bi 98.5 0.0065 1.4E-07 69.9 52.6 522 10-546 307-930 (1096)
326 KOG1645 RING-finger-containing 98.5 1.8E-05 4E-10 80.7 19.7 93 75-168 175-269 (463)
327 PF00930 DPPIV_N: Dipeptidyl p 98.4 5.6E-05 1.2E-09 82.5 25.0 290 213-509 1-346 (353)
328 PF14583 Pectate_lyase22: Olig 98.4 0.00096 2.1E-08 70.3 32.2 334 36-397 15-381 (386)
329 KOG1275 PAB-dependent poly(A) 98.4 1.3E-05 2.8E-10 89.8 19.4 181 63-276 147-340 (1118)
330 PRK11138 outer membrane biogen 98.4 0.00036 7.7E-09 77.7 31.5 265 63-356 69-363 (394)
331 KOG2695 WD40 repeat protein [G 98.4 3.9E-07 8.5E-12 90.6 6.8 126 8-134 251-387 (425)
332 PF14583 Pectate_lyase22: Olig 98.4 0.0001 2.2E-09 77.5 24.1 284 210-509 41-369 (386)
333 PF13360 PQQ_2: PQQ-like domai 98.4 0.00011 2.4E-09 75.6 24.3 182 71-284 1-197 (238)
334 KOG1275 PAB-dependent poly(A) 98.4 6.5E-06 1.4E-10 92.2 15.6 186 20-233 146-341 (1118)
335 KOG3616 Selective LIM binding 98.4 1.1E-06 2.5E-11 95.3 9.0 176 608-783 675-879 (1636)
336 PRK02888 nitrous-oxide reducta 98.4 0.00015 3.2E-09 80.9 25.2 235 259-520 140-405 (635)
337 KOG1645 RING-finger-containing 98.3 3E-05 6.4E-10 79.3 17.9 240 228-480 175-461 (463)
338 PF00400 WD40: WD domain, G-be 98.3 2.2E-06 4.7E-11 59.4 6.8 39 125-163 1-39 (39)
339 KOG3621 WD40 repeat-containing 98.3 0.00021 4.6E-09 78.6 24.9 113 203-316 32-150 (726)
340 COG5290 IkappaB kinase complex 98.2 0.0018 4E-08 72.0 30.0 100 676-776 938-1043(1243)
341 PF08596 Lgl_C: Lethal giant l 98.2 0.00085 1.8E-08 73.1 26.8 274 11-316 3-332 (395)
342 KOG3621 WD40 repeat-containing 98.2 0.00022 4.8E-09 78.5 21.7 164 92-279 32-198 (726)
343 PF00780 CNH: CNH domain; Int 98.2 0.0019 4.1E-08 68.0 28.9 249 214-496 5-271 (275)
344 PF11768 DUF3312: Protein of u 98.2 0.021 4.5E-07 62.6 40.3 88 436-523 238-333 (545)
345 PF06433 Me-amine-dh_H: Methyl 98.1 0.0077 1.7E-07 62.5 30.7 271 31-355 17-329 (342)
346 cd00216 PQQ_DH Dehydrogenases 98.1 0.0024 5.3E-08 72.8 29.9 288 21-357 61-435 (488)
347 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.011 2.5E-07 57.4 30.2 143 21-165 23-165 (354)
348 PF04841 Vps16_N: Vps16, N-ter 98.1 0.004 8.6E-08 68.9 29.7 244 74-346 62-314 (410)
349 COG0823 TolB Periplasmic compo 98.1 0.00016 3.5E-09 79.4 17.7 161 338-509 218-388 (425)
350 PF06433 Me-amine-dh_H: Methyl 98.0 0.0067 1.5E-07 62.9 26.9 280 73-399 17-322 (342)
351 COG3391 Uncharacterized conser 98.0 0.013 2.9E-07 64.4 30.9 252 11-288 32-293 (381)
352 cd00216 PQQ_DH Dehydrogenases 98.0 0.0074 1.6E-07 68.9 29.5 250 22-307 111-454 (488)
353 PF06977 SdiA-regulated: SdiA- 97.9 0.0028 6E-08 64.0 21.8 203 88-311 16-242 (248)
354 PF08596 Lgl_C: Lethal giant l 97.9 0.0041 8.9E-08 67.8 24.2 290 53-398 3-336 (395)
355 PF00780 CNH: CNH domain; Int 97.9 0.013 2.8E-07 61.6 27.6 241 19-290 5-267 (275)
356 PF04841 Vps16_N: Vps16, N-ter 97.9 0.017 3.7E-07 64.0 29.2 209 14-260 33-271 (410)
357 KOG2280 Vacuolar assembly/sort 97.8 0.026 5.7E-07 63.4 29.5 205 338-554 64-284 (829)
358 KOG1897 Damage-specific DNA bi 97.8 0.13 2.8E-06 59.8 44.0 409 10-478 488-940 (1096)
359 PF06977 SdiA-regulated: SdiA- 97.8 0.013 2.8E-07 59.3 24.8 204 243-477 16-247 (248)
360 COG0823 TolB Periplasmic compo 97.8 0.0016 3.4E-08 71.8 19.5 192 244-470 188-387 (425)
361 PF03178 CPSF_A: CPSF A subuni 97.7 0.012 2.5E-07 63.5 25.3 215 31-275 2-262 (321)
362 PF02897 Peptidase_S9_N: Proly 97.7 0.021 4.7E-07 64.0 28.0 246 207-485 126-409 (414)
363 PF02897 Peptidase_S9_N: Proly 97.7 0.17 3.6E-06 56.8 34.1 256 251-527 126-412 (414)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.19 4.2E-06 57.6 34.5 109 21-132 69-198 (527)
365 KOG1008 Uncharacterized conser 97.6 1.6E-05 3.5E-10 85.8 0.4 204 8-235 55-276 (783)
366 KOG2280 Vacuolar assembly/sort 97.5 0.01 2.2E-07 66.4 20.7 95 453-550 217-316 (829)
367 PF15390 DUF4613: Domain of un 97.5 0.11 2.4E-06 57.1 27.7 149 10-166 20-187 (671)
368 KOG1008 Uncharacterized conser 97.5 3.6E-05 7.7E-10 83.3 1.4 159 6-166 99-276 (783)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.13 2.7E-06 59.1 29.9 264 22-289 121-501 (527)
370 PRK13616 lipoprotein LpqB; Pro 97.5 0.014 3.1E-07 67.2 22.0 216 225-473 328-560 (591)
371 COG3391 Uncharacterized conser 97.4 0.26 5.7E-06 54.2 31.0 246 33-309 13-271 (381)
372 COG3386 Gluconolactonase [Carb 97.4 0.074 1.6E-06 55.9 24.7 226 15-267 30-274 (307)
373 KOG4640 Anaphase-promoting com 97.4 0.00073 1.6E-08 73.6 9.5 93 9-102 20-114 (665)
374 PF08553 VID27: VID27 cytoplas 97.3 0.012 2.5E-07 68.8 19.4 134 28-165 501-647 (794)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.027 5.8E-07 61.2 20.5 91 209-300 6-118 (415)
376 PF08553 VID27: VID27 cytoplas 97.3 0.017 3.6E-07 67.5 20.0 135 70-233 501-646 (794)
377 COG3386 Gluconolactonase [Carb 97.3 0.18 4E-06 53.0 25.5 230 210-469 30-273 (307)
378 PF03178 CPSF_A: CPSF A subuni 97.2 0.1 2.2E-06 56.1 24.3 141 21-166 42-203 (321)
379 KOG2079 Vacuolar assembly/sort 97.2 0.0065 1.4E-07 70.5 14.4 101 20-122 98-202 (1206)
380 smart00320 WD40 WD40 repeats. 97.1 0.0012 2.5E-08 44.7 5.5 39 41-79 2-40 (40)
381 COG3490 Uncharacterized protei 97.1 0.12 2.7E-06 51.3 20.7 246 139-440 71-346 (366)
382 KOG4640 Anaphase-promoting com 97.1 0.002 4.3E-08 70.4 9.4 93 51-144 20-114 (665)
383 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.055 1.2E-06 46.2 16.1 100 54-160 2-109 (111)
384 COG3490 Uncharacterized protei 97.1 0.27 5.8E-06 49.1 22.7 182 338-526 91-317 (366)
385 PRK10115 protease 2; Provision 97.1 0.75 1.6E-05 54.8 31.6 240 206-483 128-397 (686)
386 PRK13616 lipoprotein LpqB; Pro 97.1 0.062 1.4E-06 62.0 21.8 186 52-272 350-562 (591)
387 PF05694 SBP56: 56kDa selenium 97.1 0.57 1.2E-05 50.3 26.5 235 20-267 86-392 (461)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.79 1.7E-05 50.1 29.4 271 14-288 6-408 (415)
389 COG5276 Uncharacterized conser 96.9 0.52 1.1E-05 47.3 25.2 184 249-444 87-287 (370)
390 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.081 1.8E-06 45.3 15.5 100 12-118 2-109 (111)
391 KOG0985 Vesicle coat protein c 96.9 0.0092 2E-07 68.6 12.4 104 622-725 1049-1159(1666)
392 PF10647 Gmad1: Lipoprotein Lp 96.9 0.31 6.7E-06 50.1 22.6 192 250-474 25-231 (253)
393 COG3204 Uncharacterized protei 96.8 0.47 1E-05 47.9 21.8 204 89-311 81-304 (316)
394 smart00320 WD40 WD40 repeats. 96.8 0.0042 9.1E-08 41.7 5.9 39 83-121 2-40 (40)
395 COG3204 Uncharacterized protei 96.7 0.36 7.8E-06 48.7 20.3 173 48-237 82-266 (316)
396 PF15390 DUF4613: Domain of un 96.7 1.4 3.1E-05 48.8 27.3 118 203-320 55-187 (671)
397 PHA02713 hypothetical protein; 96.6 0.11 2.4E-06 60.2 19.4 65 215-281 463-536 (557)
398 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.96 2.1E-05 46.1 24.8 235 54-300 25-307 (336)
399 PLN03218 maturation of RBCL 1; 96.6 0.034 7.5E-07 68.6 15.8 76 653-728 516-608 (1060)
400 PF07995 GSDH: Glucose / Sorbo 96.6 1.4 2.9E-05 47.5 26.8 258 11-273 3-330 (331)
401 TIGR03118 PEPCTERM_chp_1 conse 96.6 1 2.2E-05 45.9 23.0 224 249-490 23-289 (336)
402 PLN03081 pentatricopeptide (PP 96.6 0.025 5.4E-07 68.2 14.2 129 652-780 368-520 (697)
403 KOG2395 Protein involved in va 96.5 0.039 8.5E-07 59.3 13.2 144 20-166 344-501 (644)
404 PRK11788 tetratricopeptide rep 96.5 0.043 9.4E-07 61.1 14.8 150 631-780 117-308 (389)
405 KOG4441 Proteins containing BT 96.5 0.22 4.8E-06 57.6 20.1 228 20-280 284-548 (571)
406 PRK10115 protease 2; Provision 96.4 3.1 6.7E-05 49.7 34.6 111 53-165 128-255 (686)
407 PLN03081 pentatricopeptide (PP 96.4 0.067 1.4E-06 64.5 16.5 128 652-779 267-416 (697)
408 PF14870 PSII_BNR: Photosynthe 96.4 1.5 3.3E-05 45.8 29.1 182 222-439 120-301 (302)
409 KOG2079 Vacuolar assembly/sort 96.3 0.085 1.8E-06 61.7 15.1 102 62-165 98-203 (1206)
410 PLN03218 maturation of RBCL 1; 96.3 0.08 1.7E-06 65.5 15.9 128 654-781 482-641 (1060)
411 PRK13684 Ycf48-like protein; P 96.2 2.2 4.8E-05 45.9 28.3 268 9-315 45-327 (334)
412 PF05694 SBP56: 56kDa selenium 96.2 0.89 1.9E-05 49.0 21.1 174 210-385 135-393 (461)
413 PF14870 PSII_BNR: Photosynthe 96.1 2.2 4.8E-05 44.7 28.8 268 9-314 16-299 (302)
414 KOG0985 Vesicle coat protein c 96.1 0.34 7.3E-06 56.5 18.0 104 650-779 416-519 (1666)
415 PRK11788 tetratricopeptide rep 96.0 0.098 2.1E-06 58.2 14.3 179 603-781 44-276 (389)
416 KOG4499 Ca2+-binding protein R 96.0 1.4 3E-05 42.8 19.1 93 208-300 161-263 (310)
417 KOG2395 Protein involved in va 96.0 0.11 2.5E-06 55.9 13.3 110 207-317 378-498 (644)
418 TIGR02521 type_IV_pilW type IV 96.0 0.13 2.9E-06 51.9 14.0 129 652-780 73-229 (234)
419 PF12894 Apc4_WD40: Anaphase-p 96.0 0.023 5E-07 40.4 5.5 34 9-43 11-44 (47)
420 TIGR00990 3a0801s09 mitochondr 95.9 0.17 3.7E-06 60.0 16.4 150 631-780 341-534 (615)
421 KOG4441 Proteins containing BT 95.9 0.65 1.4E-05 53.8 20.3 189 61-281 283-502 (571)
422 PF05096 Glu_cyclase_2: Glutam 95.9 2.3 5E-05 43.0 22.1 154 12-170 47-208 (264)
423 KOG2444 WD40 repeat protein [G 95.8 0.0091 2E-07 57.4 3.9 105 63-167 70-179 (238)
424 PF05096 Glu_cyclase_2: Glutam 95.8 2.6 5.6E-05 42.7 23.0 124 42-170 34-162 (264)
425 KOG2444 WD40 repeat protein [G 95.7 0.032 7E-07 53.7 7.1 104 21-124 70-178 (238)
426 KOG4499 Ca2+-binding protein R 95.7 2.3 5E-05 41.4 19.8 218 22-266 28-272 (310)
427 TIGR00990 3a0801s09 mitochondr 95.6 0.13 2.8E-06 61.0 13.8 100 654-753 443-567 (615)
428 PF12894 Apc4_WD40: Anaphase-p 95.6 0.033 7.1E-07 39.7 5.2 36 50-86 10-45 (47)
429 KOG1898 Splicing factor 3b, su 95.6 7 0.00015 46.6 35.3 98 21-118 549-666 (1205)
430 smart00036 CNH Domain found in 95.6 3.8 8.3E-05 43.4 29.4 239 20-288 12-280 (302)
431 PF14761 HPS3_N: Hermansky-Pud 95.6 1.3 2.9E-05 43.0 17.3 170 324-518 22-213 (215)
432 PF07995 GSDH: Glucose / Sorbo 95.5 4.5 9.7E-05 43.6 25.6 113 137-271 3-136 (331)
433 PF10647 Gmad1: Lipoprotein Lp 95.5 3.5 7.7E-05 42.3 23.6 153 53-226 25-187 (253)
434 PHA02713 hypothetical protein; 95.4 0.38 8.2E-06 55.8 15.9 188 20-238 303-537 (557)
435 PRK11447 cellulose synthase su 95.3 0.26 5.6E-06 63.1 15.8 177 604-780 505-737 (1157)
436 PLN03077 Protein ECB2; Provisi 95.3 0.37 8E-06 59.8 16.7 129 652-780 532-683 (857)
437 PRK13684 Ycf48-like protein; P 95.1 6.1 0.00013 42.6 28.2 147 367-519 174-331 (334)
438 PHA03098 kelch-like protein; P 95.0 0.99 2.1E-05 52.6 18.3 144 20-168 294-467 (534)
439 PRK12370 invasion protein regu 95.0 0.32 6.9E-06 56.7 13.8 124 658-781 318-468 (553)
440 TIGR02521 type_IV_pilW type IV 94.9 0.52 1.1E-05 47.4 14.0 129 653-781 40-196 (234)
441 PRK15174 Vi polysaccharide exp 94.9 0.41 8.8E-06 57.0 14.8 103 652-754 118-238 (656)
442 KOG1898 Splicing factor 3b, su 94.9 11 0.00025 44.9 34.2 61 106-166 550-619 (1205)
443 KOG3630 Nuclear pore complex, 94.9 0.24 5.2E-06 58.5 11.8 155 13-167 45-230 (1405)
444 PLN03077 Protein ECB2; Provisi 94.8 0.39 8.5E-06 59.5 14.9 128 652-781 432-616 (857)
445 PF13429 TPR_15: Tetratricopep 94.8 0.11 2.4E-06 54.7 8.7 104 652-755 118-241 (280)
446 PF10168 Nup88: Nuclear pore c 94.6 11 0.00024 44.9 25.1 75 205-280 85-181 (717)
447 PRK10747 putative protoheme IX 94.5 1.1 2.4E-05 49.8 16.0 179 603-781 93-321 (398)
448 KOG2247 WD40 repeat-containing 94.4 0.011 2.5E-07 62.7 0.2 244 11-258 36-305 (615)
449 KOG2377 Uncharacterized conser 94.4 0.71 1.5E-05 49.1 12.9 138 369-509 26-172 (657)
450 PHA03098 kelch-like protein; P 94.4 1.5 3.3E-05 51.0 17.6 104 61-168 293-417 (534)
451 KOG2063 Vacuolar assembly/sort 94.4 15 0.00033 44.0 27.0 43 742-784 492-534 (877)
452 KOG3060 Uncharacterized conser 94.3 0.43 9.3E-06 47.1 10.3 118 597-714 55-203 (289)
453 PF11725 AvrE: Pathogenicity f 94.2 4.7 0.0001 50.5 21.0 411 50-510 361-815 (1774)
454 PF14727 PHTB1_N: PTHB1 N-term 94.2 11 0.00023 41.6 31.3 144 20-166 36-205 (418)
455 TIGR02917 PEP_TPR_lipo putativ 94.2 0.66 1.4E-05 58.0 15.2 101 653-753 576-694 (899)
456 TIGR02604 Piru_Ver_Nterm putat 94.1 1.7 3.7E-05 47.7 16.3 141 10-154 14-202 (367)
457 PF13429 TPR_15: Tetratricopep 94.1 0.035 7.7E-07 58.5 3.0 100 653-753 17-135 (280)
458 PRK10049 pgaA outer membrane p 94.1 0.64 1.4E-05 56.6 14.1 150 604-753 247-452 (765)
459 TIGR02917 PEP_TPR_lipo putativ 94.0 0.84 1.8E-05 57.0 15.8 150 605-754 544-729 (899)
460 PF12234 Rav1p_C: RAVE protein 93.9 2.5 5.4E-05 48.6 17.1 124 92-233 28-155 (631)
461 TIGR03074 PQQ_membr_DH membran 93.8 19 0.00042 43.2 41.0 111 21-132 194-353 (764)
462 PF14781 BBS2_N: Ciliary BBSom 93.8 2.9 6.3E-05 37.2 13.6 116 13-132 2-134 (136)
463 PF12234 Rav1p_C: RAVE protein 93.8 2.2 4.7E-05 49.1 16.3 110 53-164 31-155 (631)
464 PF04840 Vps16_C: Vps16, C-ter 93.7 1.1 2.4E-05 47.6 13.1 116 652-784 185-305 (319)
465 KOG1916 Nuclear protein, conta 93.5 0.06 1.3E-06 61.5 3.5 115 48-165 129-265 (1283)
466 KOG3630 Nuclear pore complex, 93.4 0.73 1.6E-05 54.7 11.8 145 95-266 102-261 (1405)
467 PRK09782 bacteriophage N4 rece 93.3 0.98 2.1E-05 55.8 13.7 149 606-754 521-703 (987)
468 PF10395 Utp8: Utp8 family; I 93.3 20 0.00043 41.5 23.9 65 423-489 242-314 (670)
469 COG5010 TadD Flp pilus assembl 93.2 0.95 2.1E-05 45.0 10.8 76 652-727 108-196 (257)
470 TIGR02604 Piru_Ver_Nterm putat 93.1 4.3 9.4E-05 44.5 17.3 150 94-267 14-202 (367)
471 PHA02790 Kelch-like protein; P 92.9 4.9 0.00011 45.9 17.9 104 61-168 270-387 (480)
472 PRK12370 invasion protein regu 92.9 1.7 3.8E-05 50.6 14.6 127 653-779 347-498 (553)
473 PRK15363 pathogenicity island 92.8 1.3 2.8E-05 41.0 10.4 79 653-752 44-127 (157)
474 PF14761 HPS3_N: Hermansky-Pud 92.7 7.1 0.00015 38.1 15.7 103 217-320 29-164 (215)
475 COG3292 Predicted periplasmic 92.6 21 0.00045 39.9 23.3 266 9-313 164-440 (671)
476 PRK10370 formate-dependent nit 92.5 0.69 1.5E-05 45.5 9.1 85 670-754 70-170 (198)
477 COG5290 IkappaB kinase complex 92.5 5.5 0.00012 45.7 16.6 44 741-784 935-978 (1243)
478 PF12895 Apc3: Anaphase-promot 92.5 0.64 1.4E-05 38.3 7.6 75 657-753 2-83 (84)
479 COG3063 PilF Tfp pilus assembl 92.3 1.5 3.3E-05 42.8 10.6 161 608-781 56-234 (250)
480 PF04733 Coatomer_E: Coatomer 92.3 0.39 8.5E-06 50.3 7.4 108 597-704 38-162 (290)
481 PF07569 Hira: TUP1-like enhan 92.2 0.86 1.9E-05 45.5 9.4 39 491-529 67-105 (219)
482 KOG1155 Anaphase-promoting com 92.0 1.6 3.4E-05 47.0 11.2 35 670-704 429-466 (559)
483 COG5167 VID27 Protein involved 92.0 2.7 5.8E-05 45.6 12.8 155 7-166 464-633 (776)
484 KOG2003 TPR repeat-containing 92.0 1.5 3.2E-05 46.6 10.8 128 602-737 427-580 (840)
485 PF10395 Utp8: Utp8 family; I 91.8 30 0.00065 40.1 23.6 155 367-523 131-309 (670)
486 PHA02790 Kelch-like protein; P 91.7 7.3 0.00016 44.5 17.5 142 20-168 271-426 (480)
487 KOG2076 RNA polymerase III tra 91.7 1.8 4E-05 50.4 12.1 126 654-779 183-341 (895)
488 TIGR03074 PQQ_membr_DH membran 91.7 37 0.0008 40.9 38.6 109 63-172 194-351 (764)
489 PF13432 TPR_16: Tetratricopep 91.6 0.38 8.3E-06 37.2 5.0 48 652-699 5-57 (65)
490 PF08728 CRT10: CRT10; InterP 91.6 6.2 0.00013 46.0 16.3 142 21-164 49-245 (717)
491 PF14727 PHTB1_N: PTHB1 N-term 91.5 25 0.00055 38.8 30.0 150 105-277 37-203 (418)
492 KOG4626 O-linked N-acetylgluco 91.3 1.3 2.7E-05 49.3 9.8 102 653-754 363-482 (966)
493 PRK15174 Vi polysaccharide exp 91.2 4.2 9.2E-05 48.5 15.4 14 766-779 330-343 (656)
494 KOG2003 TPR repeat-containing 91.1 2.5 5.5E-05 44.9 11.4 101 671-771 590-711 (840)
495 PF13414 TPR_11: TPR repeat; P 91.0 0.55 1.2E-05 36.8 5.3 32 672-703 2-33 (69)
496 PRK15359 type III secretion sy 91.0 3 6.4E-05 38.6 11.0 82 652-754 32-118 (144)
497 PF10602 RPN7: 26S proteasome 90.9 1.8 3.9E-05 41.6 9.7 65 657-721 16-95 (177)
498 PF10168 Nup88: Nuclear pore c 90.9 20 0.00043 42.7 20.1 74 10-83 85-181 (717)
499 PF10313 DUF2415: Uncharacteri 90.9 1 2.2E-05 31.1 5.6 31 10-40 1-34 (43)
500 PF08728 CRT10: CRT10; InterP 90.6 10 0.00022 44.3 16.8 123 146-277 113-245 (717)
No 1
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-175 Score=1388.36 Aligned_cols=896 Identities=70% Similarity=1.154 Sum_probs=837.5
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
|+++|+..+++|++++|||..+|++++.++|.|++||+++++++.+|.+|++||++++|||++++|+|||+|.+|+||++
T Consensus 1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CcchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
++.+|++++.||.++|+.+.||+..+||+|+|+|++|+||||++++++..++||+++|+|.+|+|..+.++++|.|++||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcceeccCC--ccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 161 VWDIGALRKKTVSPA--DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 161 vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
+||+.+.+++...++ ...+.....+.++++..+.+++++++||+++|++++|+|+.++|++|++|+.|++|.++..+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 999999999988877 233344456678999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEe
Q 002490 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (916)
Q Consensus 239 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~ 318 (916)
|++.++++|.++|+|+.|||..++|++.|+|++|+|||+.+++.++++++.++++|.++.||..+++|+|+|+|+++|++
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeC
Q 002490 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (916)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~ 398 (916)
++++|++..+++.|++++++.|+.+|+.+.+...+.+++..+. +|.++++++|+|..+.+++++..++|.+.++.+++
T Consensus 321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 9999999999999999999999999999999999999998775 37799999999999999999988999999999998
Q ss_pred CCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceEEEeeCCCceeEEEEeCCceEEEEECCEEEEEE
Q 002490 399 DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFD 478 (916)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~~d~~v~l~d 478 (916)
...+... ......++...+.|..+++|++....+.++.|.++.++..+++..+..+..|++.++|.+|+.+...|.+||
T Consensus 399 ~~~~~~~-~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~~~v~lfd 477 (1202)
T KOG0292|consen 399 DSDGVSD-GKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSPDSVTLFD 477 (1202)
T ss_pred cccccCC-chhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEcCCeEEEEE
Confidence 8766554 355667788899999999999999989999999999999999999888999999999999999999999999
Q ss_pred cCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCC
Q 002490 479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNG 558 (916)
Q Consensus 479 ~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~ 558 (916)
+++++.+.+++.+++++|.||+|++++|..++|+|+|++++++.+++++|++||||++|+++|++||+|+||+||++.+|
T Consensus 478 vQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtiriksgawde~gVfiYtT~nHikYal~~G 557 (1202)
T KOG0292|consen 478 VQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENG 557 (1202)
T ss_pred eecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhheecchheeEeeeceeccCceEEEEehhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCch
Q 002490 559 DSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPE 638 (916)
Q Consensus 559 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e 638 (916)
|+|+|++++.|+|+++++++.+||++|++.++.+.||++||+||+||.+++|+++++|+++++++||+||+|||++||||
T Consensus 558 D~GIikTLd~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgype 637 (1202)
T KOG0292|consen 558 DSGIIKTLDKPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPE 637 (1202)
T ss_pred CcceEEecccceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHH
Q 002490 639 VALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKL 718 (916)
Q Consensus 639 ~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l 718 (916)
+|||||+|+++||+||++|||+++|++.|++++++.+|++||+.|+.|||+++||+|||++++|++|+|||++|||.+||
T Consensus 638 iAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 638 IALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCCCCCCCCC-CCCccCC
Q 002490 719 SKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEG-KAPSLLM 797 (916)
Q Consensus 719 ~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~ 797 (916)
+||++|++.|+|....+++++|+||++|++++|.++|++++||.+|++||+.++|.++.++++.....+|+. +++.+++
T Consensus 718 ~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~ 797 (1202)
T KOG0292|consen 718 SKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQ 797 (1202)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999877779987 7889999
Q ss_pred CCCCccCCCCCCcccccchhhhhccccCCCCccccccccccCCCcc---ccccccccCCCCCccccccccCccccCCccc
Q 002490 798 PPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGE---ELDMVDVDGLQNGDVAAILEDGEVAEEGEEE 874 (916)
Q Consensus 798 ~~~~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (916)
||+|+...+||||+.+++++||+++.+.+.-...+. +.+++|++ +.|..++| +... .++.+++.++||
T Consensus 798 pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~~~av~~--~~e~~~g~e~~~~e~~l~e--d~~~-----~~d~~g~~~~dE 868 (1202)
T KOG0292|consen 798 PPVPIMPLENWPLLSVSKGTFEGALLSRSSSLAVDR--DDEGDWGEEGWDVELMLGE--DGIL-----FNDGAGEVGEDE 868 (1202)
T ss_pred CCCccccccCCchhhhhhhhhhHhhhhhcccCcccc--cccccccccchhhhhcccc--cccc-----ccccccccCccc
Confidence 999987778999999999999999984433322222 22233443 22222221 1111 111122234567
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceeEeeeeeeee
Q 002490 875 EGGWDLEDLELPPEAETPKAPVNARSAVFGATLICVH 911 (916)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (916)
++|||++|+++|++++++. ++++++||+|..++-
T Consensus 869 ~~gWdv~d~~l~pe~~~~~---~~~~~~~~~p~~~~~ 902 (1202)
T KOG0292|consen 869 GGGWDVGDLDLPPEEDTPK---GADDGEFVVPAQGMS 902 (1202)
T ss_pred ccCcCcccccCCccccccc---cccccceecCCCCCc
Confidence 7899999999999999987 789999999987764
No 2
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-88 Score=696.90 Aligned_cols=732 Identities=30% Similarity=0.536 Sum_probs=646.7
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
++|..|+.+|+++.|||..+|++++..+|.|+|||+++..+++.++-.+-||++..|-+..+++++|++|..|+||++.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEE
Q 002490 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVR 160 (916)
Q Consensus 83 ~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~ 160 (916)
++.+.++..|.++|++++.||..++++++|+|-+|++||++. ..+.+++.||.+.|++++|+|.. +.++++|.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999984 57888999999999999999964 5999999999999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC--CEEEEEECCCcEEEEECCCCcc
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
+|.+.+.. +.+.+++|..+|+|+.|-+.| ++|++|++|.+|+|||..+..+
T Consensus 167 VWslgs~~---------------------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 167 VWSLGSPH---------------------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred EEEcCCCC---------------------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99997643 346889999999999999855 7999999999999999999998
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEe
Q 002490 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (916)
Q Consensus 239 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~ 318 (916)
+.++.||.++|+++.|+|.-.++++|++||++|+|+..+.+...++....+++|+++..+.++.+++|.|.|.++.++
T Consensus 220 --V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 220 --VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred --HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 999999999999999999999999999999999999999988888888889999999999999999999999999999
Q ss_pred cCCcceEEecCCE-EEEEeCCeEEEEEccC---------CceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCC
Q 002490 319 ERERPAFAVSGDS-LFYAKDRFLRYYEFST---------QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG 388 (916)
Q Consensus 319 ~~~~~~~s~~~~~-l~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~ 388 (916)
.++.|+.+.+.+. ++.+..+.+.--++.+ |+.++ +..+..|.. ...+..++.||+|+.++++++
T Consensus 298 greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~-LsvKeLgs~--eiyPq~L~hsPNGrfV~Vcgd--- 371 (794)
T KOG0276|consen 298 GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLP-LSVKELGSV--EIYPQTLAHSPNGRFVVVCGD--- 371 (794)
T ss_pred cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcccc-chhhhcccc--ccchHHhccCCCCcEEEEecC---
Confidence 9999999988774 7777666666555443 33333 233444442 236778999999999888876
Q ss_pred CEEEEEEeeCCCCCCCccccccccCceeEEEEEeC-CcEEEEEcCCCEEEEEccCCceEEEeeCCCceeEEEEeCCceEE
Q 002490 389 GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLL 467 (916)
Q Consensus 389 g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~-~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l 467 (916)
|.+.||..-. ......+.....+|++| +.|.+..+ ++.|.++ -+.+..+++..+.....+ | .|.+|
T Consensus 372 GEyiIyTala--------~RnK~fG~~~eFvw~~dsne~avRes-~~~vki~-knfke~ksi~~~~~~e~i-~--gg~Ll 438 (794)
T KOG0276|consen 372 GEYIIYTALA--------LRNKAFGSGLEFVWAADSNEFAVRES-NGNVKIF-KNFKEHKSIRPDMSAEGI-F--GGPLL 438 (794)
T ss_pred ccEEEEEeee--------hhhcccccceeEEEcCCCCeEEEEec-CCceEEE-ecceeccccccccceeee-c--CCceE
Confidence 8999997411 34566778889999999 56666655 7888888 334677777766442222 2 34666
Q ss_pred EE-ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEE-------------------e
Q 002490 468 CR-AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTL-------------------H 527 (916)
Q Consensus 468 ~~-~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~-------------------~ 527 (916)
.. +++.+++||.++++.++++... .+.+.|+.+|.++++++++..+++..+.+.+... .
T Consensus 439 g~~ss~~~~fydW~~~~lVrrI~v~-~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLg 517 (794)
T KOG0276|consen 439 GVRSSDFLCFYDWESGELVRRIEVT-SKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLG 517 (794)
T ss_pred EEEeCCeEEEEEcccceEEEEEeec-cceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 65 8999999999999999999864 6889999999999999999988887664432211 1
Q ss_pred e-eeeEEEEEEecCCeEEEEcC-CceeEEccCCceEEEEEecceEEEEEE--eCCEEEEEeCCCCeEEEEeChhHHHHHH
Q 002490 528 E-TIRVKSGAWDDNGVFIYTTL-NHIKYCLPNGDSGIIRTLDVPIYITKV--SGNTIFCLDRDGKNRAIVIDATEYIFKL 603 (916)
Q Consensus 528 ~-~~~i~s~~w~~~~~~l~~t~-~~~~~~l~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~f~~ 603 (916)
| +..|+.+.|.. ++++|+++ |++.|+ +.|+.-.+..++.++|+++. +++++|+.|++..+..+.|+...++|+.
T Consensus 518 E~sE~v~tg~Wvg-D~fiytts~nrlnY~-vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt 595 (794)
T KOG0276|consen 518 EVSESVKTGKWVG-DCFIYTTSNNRLNYL-VGGETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQT 595 (794)
T ss_pred hhhhheeeceeee-eEEEEeecccceeEE-cCCceEEEEEeccchhheeeeecCCEEEEeecccceEeEeeehHHHHHHH
Confidence 1 66889999998 78888877 778887 79999999999999999995 7899999999999999999999999999
Q ss_pred HHhcccHHHHHhhhccCccc-chhHHHHHHHCCCchhhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHH
Q 002490 604 SLLRKRYDHVMSMIRNSQLC-GQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVE 682 (916)
Q Consensus 604 al~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~e~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~ 682 (916)
++.+++++.|...+.+.+.. -..+++||+++||.|.||+...||..||++|+++|++++|.++|.+.+++..|++||+.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDA 675 (794)
T ss_pred HhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999998877766543 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHH
Q 002490 683 ALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYI 762 (916)
Q Consensus 683 al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~ 762 (916)
|++.|++..|.+|+.+++|+.+|..||...||-+.+.++++.++..+.+..+|.+++.+|++++|.++|.+.+|+++|..
T Consensus 676 al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal 755 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAAL 755 (794)
T ss_pred HhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhCCCCCC
Q 002490 763 TASVHGLQDVAERLAAELGDNVPS 786 (916)
Q Consensus 763 ~a~~~g~~~~a~~l~~~~~~~~~~ 786 (916)
+|++|.. +++.++.+.|..+...
T Consensus 756 ~ArtYlp-s~vs~iv~~wk~~l~k 778 (794)
T KOG0276|consen 756 FARTYLP-SQVSRIVELWKEDLSK 778 (794)
T ss_pred HHhhhCh-HHHHHHHHHHHHHhhh
Confidence 9999988 5699999888866544
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=2.5e-63 Score=536.59 Aligned_cols=413 Identities=41% Similarity=0.676 Sum_probs=324.3
Q ss_pred CeEEEEEccCC-----ceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCcccccccc
Q 002490 338 RFLRYYEFSTQ-----KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKK 412 (916)
Q Consensus 338 ~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~ 412 (916)
+.|+.+|+.+. .....++.+..+.. +..+++++++|+|+.++|+++ |.+.||.... ......
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~--~~~p~~ls~npngr~v~V~g~---geY~iyt~~~--------~r~k~~ 68 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGSC--EIYPQSLSHNPNGRFVLVCGD---GEYEIYTALA--------WRNKAF 68 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE---SS--SEEEE-TTSSEEEEEET---TEEEEEETTT--------TEEEEE
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCCC--CcCCeeEEECCCCCEEEEEcC---CEEEEEEccC--------Cccccc
Confidence 45666666654 22233344433332 337899999999999999776 8999998211 234556
Q ss_pred CceeEEEEEeCCcEEEEEcCCCEEEE-EccCCceEEEeeCCCceeEEEEeCCceEEEE-ECCEEEEEEcCCCeEEEEEEc
Q 002490 413 GLGGSAIFIARNRFAVLDKSSNQVLV-KNLKNEVVKKSILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQT 490 (916)
Q Consensus 413 ~~i~~~~fs~~~~~l~~~~~d~~I~i-wdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~-~d~~v~l~d~~~~~~~~~~~~ 490 (916)
+....++|+++++|++..+ +++|.| .++++...++++.+..+..|+. |.+|+. +++.|.+||+++++.++++..
T Consensus 69 G~g~~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLES-SSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-T-TS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS
T ss_pred CceeEEEEecCccEEEEEC-CCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEec
Confidence 7888999999999988888 788999 6888777778888877888888 777776 777899999999999999998
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEecCCc------------ceEEEee-eeeEEEEEEecCCeEEEEcCCceeEEccC
Q 002490 491 PFVKYVVWSNDMESVALLSKHAIIIASKKLV------------HQCTLHE-TIRVKSGAWDDNGVFIYTTLNHIKYCLPN 557 (916)
Q Consensus 491 ~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~------------~~~~~~~-~~~i~s~~w~~~~~~l~~t~~~~~~~l~~ 557 (916)
.+|++|.||++|+++|..++++++|++.+.+ .++.++| +.+|+|++|+.+ +++|+|.+|++| +++
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY-l~~ 222 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY-LVN 222 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE-EET
T ss_pred CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE-EEc
Confidence 7799999999999999999999999999999 8999999 999999999997 999999999999 699
Q ss_pred CceEEEEEecceEEEEEEeC--CEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCccc-------chhHH
Q 002490 558 GDSGIIRTLDVPIYITKVSG--NTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLC-------GQAMI 628 (916)
Q Consensus 558 ~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~-------~~~i~ 628 (916)
|+.|+|++++.|+|++++.. +++|++||++++..+.|++++++||+|+.++++++|+++++..+++ +++++
T Consensus 223 Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~ 302 (443)
T PF04053_consen 223 GETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIA 302 (443)
T ss_dssp TEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHH
T ss_pred CCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHH
Confidence 99999999999999999988 9999999999999999999999999999999999999999988888 99999
Q ss_pred HHHHHCCCchhhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhH
Q 002490 629 AYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFL 708 (916)
Q Consensus 629 ~~l~~~~~~e~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l 708 (916)
+||+++||+|+||++++||++||+||++|||++.|+++|++++++..|++||+.||++|++++||+||++++|+++|.||
T Consensus 303 ~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lL 382 (443)
T PF04053_consen 303 RFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLL 382 (443)
T ss_dssp HHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Q 002490 709 YLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGL 769 (916)
Q Consensus 709 ~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~ 769 (916)
|..+||.++|+||+++++.+++.+.+|++++++||+++|+++|.++|++++|+.+|++||.
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-49 Score=383.66 Aligned_cols=329 Identities=26% Similarity=0.413 Sum_probs=292.1
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
.++.||.++|.|++|+|+|..|++|+-|.++++||+.+.++..+.++|..-|.|++|+|||+.||+|+.||+|++||.++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeeE-EEEecCCCCEEEEEEcC-----CCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECC
Q 002490 83 HRCL-FTLLGHLDYIRTVQFHH-----EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (916)
Q Consensus 83 ~~~~-~~l~~h~~~v~~v~fs~-----~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d 156 (916)
++++ ..+.+|...|++++|.| ..++|++++.||+|+|||+..++++..+.+|..+|+|+.|-.+ .+++++|.|
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~D 267 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQD 267 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCC
Confidence 8776 57899999999999986 5669999999999999999999999999999999999999754 499999999
Q ss_pred CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc-----------CCCC--------
Q 002490 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-----------PTLP-------- 217 (916)
Q Consensus 157 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~~~-------- 217 (916)
++|++|+...+.. ...+.+|...|+.++.+ |.++
T Consensus 268 rtIkvw~a~dG~~---------------------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 268 RTIKVWRALDGKL---------------------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred ceEEEEEccchhH---------------------------HHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 9999999876543 33677788888877765 3333
Q ss_pred -----------------EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 218 -----------------LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 218 -----------------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
.+++|++|.++.+|+....+. ++..+.+|..-|..+.||||+++|++++-|++|++||..+|
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 499999999999999776553 37788899999999999999999999999999999999999
Q ss_pred ceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCC
Q 002490 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (916)
Q Consensus 281 ~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 360 (916)
+.+.+|++|-+.|+.++|+.|.+++++|+ +|.++++|++.+.+... .-+|
T Consensus 400 k~lasfRGHv~~VYqvawsaDsRLlVS~S--------------------------kDsTLKvw~V~tkKl~~----DLpG 449 (480)
T KOG0271|consen 400 KFLASFRGHVAAVYQVAWSADSRLLVSGS--------------------------KDSTLKVWDVRTKKLKQ----DLPG 449 (480)
T ss_pred chhhhhhhccceeEEEEeccCccEEEEcC--------------------------CCceEEEEEeeeeeecc----cCCC
Confidence 99999999999999999999999999998 67889999998865433 2245
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 361 ~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
|.+ .|.++.|+|||..+ +++..|..+++|.
T Consensus 450 h~D---EVf~vDwspDG~rV--~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HAD---EVFAVDWSPDGQRV--ASGGKDKVLRLWR 479 (480)
T ss_pred CCc---eEEEEEecCCCcee--ecCCCceEEEeec
Confidence 544 99999999999954 4555677888885
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-45 Score=387.75 Aligned_cols=505 Identities=17% Similarity=0.259 Sum_probs=409.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecc-cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~-h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~ 86 (916)
-...+++++.+||+++|++++.++.+++|++.+++.++..+. |++||..++|+|.+.++++|+.|+.++|||+..+.+.
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 346789999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCe-EEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 87 FTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 87 ~~l~~h~~~v~~v~fs~~~~--~l~s~s~dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd 163 (916)
+.+.||.+.|.++.|+|+-. .|+++..|+++++||+++.. ++.++..|.+.|+++.|++++..+++++.|..+.+||
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWD 220 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEee
Confidence 99999999999999999765 58899999999999998544 5788899999999999999999999999999999999
Q ss_pred CCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-----CCEEEEEECCCcEEEEECCCCcc
Q 002490 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
+..-+.....|. ...+-++.+-++ +.++++++.+|.+++||..+++.
T Consensus 221 ~~~~~~l~~lp~----------------------------ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~ 272 (775)
T KOG0319|consen 221 LVQYKKLKTLPL----------------------------YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKC 272 (775)
T ss_pred hhhhhhhheech----------------------------hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchh
Confidence 965544433221 123334444444 67999999999999999999886
Q ss_pred eeeeeeecC-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEe-cCCCeEEEEeCCC-ceE
Q 002490 239 WEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH-PEMNLLAAGHDSG-MIV 315 (916)
Q Consensus 239 ~~~~~~~~~-~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-p~~~~la~g~~~~-~~v 315 (916)
+...+.. ...+..+...+....++..+.|..+.++|..+.+....+-+.++.|..+.+- |+.+++|++++.+ +.+
T Consensus 273 --~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 273 --VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred --hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 3322222 3336666666666667777788999999999999999999999999998864 6778888877554 566
Q ss_pred EEecCCcc---------eEE----ecCCEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEE
Q 002490 316 FKLERERP---------AFA----VSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (916)
Q Consensus 316 ~~~~~~~~---------~~s----~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~ll 381 (916)
|.+..... ..+ ..|..++++ +|+++++|.++++.......-...+|.. .+.+++++..+..++
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~---svgava~~~~~asff 427 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN---SVGAVAGSKLGASFF 427 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc---ccceeeecccCccEE
Confidence 75554332 222 334467777 9999999999665444443334455544 999999998888877
Q ss_pred EEEcCCCCEEEEEEeeCCCCCCC--c----cccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC-CceEEEeeCCC-
Q 002490 382 ICSDVDGGSYELYVIPKDSIGRG--D----SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI- 453 (916)
Q Consensus 382 v~~~~~~g~i~i~~~~~~~~~~~--~----~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~~~- 453 (916)
++.+ .|+++++|.++....... . .....|...|.+++.+|+.+++++++.|++.+||+++ .+...++.+|.
T Consensus 428 vsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 7776 668999999987322111 1 1345688889999999999999999999999999999 47778899888
Q ss_pred ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc--CCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcc-eEEEe
Q 002490 454 AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLS-KHAIIIASKKLVH-QCTLH 527 (916)
Q Consensus 454 ~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~--~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~-~~~~~ 527 (916)
.+.++.|++..+++++ +|++|+||.+++.+++.++.+ ..|..+.|-.+|+.|++++ ++-|.+|+.++.. ++++.
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 9999999999999988 799999999999999999985 6788999988888887776 8899999998876 45555
Q ss_pred e-eeeEEEEEEecCCeEEEE
Q 002490 528 E-TIRVKSGAWDDNGVFIYT 546 (916)
Q Consensus 528 ~-~~~i~s~~w~~~~~~l~~ 546 (916)
. +.+|++.+-.+...++++
T Consensus 587 ~H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 587 AHNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred hccceeEEEeecCccceeEe
Confidence 4 567777766665555544
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-44 Score=367.30 Aligned_cols=477 Identities=16% Similarity=0.281 Sum_probs=385.5
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCce--EEEecccccCEEEEEEecCCCEEEEEECC----CeEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGDD----YKIKV 77 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~--~~~~~~h~~~V~~i~fsp~~~~l~s~~~d----g~I~v 77 (916)
.+..|+..++-..|||.|-|+|+|...|+|+|||....+. ..+++.-.++|..|+|++++++++..++- |.+.+
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 4678999999999999999999999999999999755332 34677789999999999999998887652 44555
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECC
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d 156 (916)
|| +|..+..+.||...|.++.|-|..+ ++++|++|++|.+|+-..-+...++..|...|.|+.|+|||.++++++.|
T Consensus 134 ~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 134 WD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred ec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 65 7888999999999999999999887 79999999999999987777788889999999999999999999999999
Q ss_pred CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002490 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 157 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~ 236 (916)
|++.+||-.++++..... .-.+|.+.|.+++|+||+..+++++.|.+++|||..+.
T Consensus 212 gki~iyDGktge~vg~l~------------------------~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELE------------------------DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ccEEEEcCCCccEEEEec------------------------CCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc
Confidence 999999998877654221 13479999999999999999999999999999998765
Q ss_pred ccee-----------------------------------------eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002490 237 KAWE-----------------------------------------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (916)
Q Consensus 237 ~~~~-----------------------------------------~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vw 275 (916)
+... ...+.+|...|+++..+|++++|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 4311 22356899999999999999999999999999999
Q ss_pred ECCCCceeEEe-eccCCcEEEEEEecCCCeEEEEeCCCceEEEecCC-------------cceEEe--cCCEEEEEeCCe
Q 002490 276 DVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE-------------RPAFAV--SGDSLFYAKDRF 339 (916)
Q Consensus 276 d~~~~~~~~~~-~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~-------------~~~~s~--~~~~l~~~~d~~ 339 (916)
+..++..-... +.|...|.+++.+..+.++.+|.|+.+.+..+... +...+. ++..++.+..+.
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 99988765544 56888999999999899999999999988755332 122232 233555555555
Q ss_pred EEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEE
Q 002490 340 LRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAI 419 (916)
Q Consensus 340 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 419 (916)
|.++.-.++ ....++. . .+.+++++|+++.+++.+ +|+.+++|.+......... ....|.++++.++
T Consensus 428 iv~l~~~~~--~~~~~~~---y-----~~s~vAv~~~~~~vaVGG--~Dgkvhvysl~g~~l~ee~-~~~~h~a~iT~va 494 (603)
T KOG0318|consen 428 IVLLQDQTK--VSSIPIG---Y-----ESSAVAVSPDGSEVAVGG--QDGKVHVYSLSGDELKEEA-KLLEHRAAITDVA 494 (603)
T ss_pred EEEEecCCc--ceeeccc---c-----ccceEEEcCCCCEEEEec--ccceEEEEEecCCccccee-eeecccCCceEEE
Confidence 555542221 1112221 1 778999999999876644 6789999999887653332 5678999999999
Q ss_pred EEeCCcEEEEEcCCCEEEEEccCCceEE--EeeCCC-ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEE---cC
Q 002490 420 FIARNRFAVLDKSSNQVLVKNLKNEVVK--KSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQ---TP 491 (916)
Q Consensus 420 fs~~~~~l~~~~~d~~I~iwdl~~~~~~--~i~~~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~---~~ 491 (916)
||||+.|+|++...+.+.+||+.++..+ .+..|. .|.+++|+|+..++|+ -|..|.||++......-.++ ..
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~ 574 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG 574 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc
Confidence 9999999999999999999999975443 344444 9999999999999999 58999999997655443333 24
Q ss_pred CeeEEEEcCCCCEEEEEeCCeEEEEecC
Q 002490 492 FVKYVVWSNDMESVALLSKHAIIIASKK 519 (916)
Q Consensus 492 ~v~~v~~s~d~~~la~~~~~~i~i~~~~ 519 (916)
.|..+.|-.+...+.++.+-.|++|+..
T Consensus 575 gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 575 GVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CceeEEEecCceEEeccCcceeEEeccc
Confidence 5999999988777777778899999864
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-42 Score=366.04 Aligned_cols=449 Identities=15% Similarity=0.246 Sum_probs=380.9
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC--------ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~--------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
..+|.|+.|||+|+++|+|. .+.++||..... .+.+++.+|-..|.++.|+.|.++|++|+.|.++++|.+
T Consensus 96 k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 46899999999999999885 578999986432 245677899999999999999999999999999999999
Q ss_pred CCCee--EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------------------CeE-----E--
Q 002490 81 KMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-----------------------RTC-----I-- 128 (916)
Q Consensus 81 ~~~~~--~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-----------------------~~~-----~-- 128 (916)
+..+. ...+.+|.++|....|..+...+++.+.||.+.+|.... ++. .
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87665 567789999999999999999999999999999997651 111 1
Q ss_pred ----EEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC
Q 002490 129 ----SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (916)
Q Consensus 129 ----~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (916)
.-+......|++.+||+..+.|+++-..|...+|.+.... +.+.+.-..
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~---------------------------lih~LSis~ 307 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN---------------------------LIHSLSISD 307 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce---------------------------EEEEeeccc
Confidence 1112234789999999999999999999999999997644 444566667
Q ss_pred CCeeEEEEcCCCCEEEEEECC-CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q 002490 205 RGVNWAAFHPTLPLIVSGADD-RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 283 (916)
.+|..++|+..|.+|+.|+.. |++-+|+..+... +...++|...+++++++|||++|++|++||.|+|||..++-+.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 889999999999999999864 7999999998876 7888999999999999999999999999999999999999999
Q ss_pred EEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCC
Q 002490 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (916)
Q Consensus 284 ~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 363 (916)
.+|..|...++.+.|+..++.+.+.+ -||+|+.||+...+....+..+.+.
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssS--------------------------LDGtVRAwDlkRYrNfRTft~P~p~--- 436 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSS--------------------------LDGTVRAWDLKRYRNFRTFTSPEPI--- 436 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEee--------------------------cCCeEEeeeecccceeeeecCCCce---
Confidence 99999999999999999999888877 6788999999988887777655421
Q ss_pred CCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC
Q 002490 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (916)
Q Consensus 364 ~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~ 443 (916)
...+++..|.|..+. ++..+.-.|.+|++..+ ++...+.+|.++|.+++|+|.+..|++++-|.+|++||+=.
T Consensus 437 ---QfscvavD~sGelV~-AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 437 ---QFSCVAVDPSGELVC-AGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred ---eeeEEEEcCCCCEEE-eeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 567889999988544 33346678889998654 44447899999999999999999999999999999999974
Q ss_pred --ceEEEeeCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc----------------------CCeeEEE
Q 002490 444 --EVVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT----------------------PFVKYVV 497 (916)
Q Consensus 444 --~~~~~i~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~----------------------~~v~~v~ 497 (916)
+...++.....+..+.|.|+|+-||+ -||.|.+||++.+..+..+.+ .....+.
T Consensus 510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ 589 (893)
T KOG0291|consen 510 SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC 589 (893)
T ss_pred cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence 47788888889999999999999977 699999999988777654421 5678999
Q ss_pred EcCCCCEEEEEe-CCeEEEEecCCcce
Q 002490 498 WSNDMESVALLS-KHAIIIASKKLVHQ 523 (916)
Q Consensus 498 ~s~d~~~la~~~-~~~i~i~~~~~~~~ 523 (916)
+|+||..+.+++ .+.|++|+...+.+
T Consensus 590 ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 590 YSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EcCCCCEEEecCCcccEEEEECchhhe
Confidence 999999998888 67999999876654
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-45 Score=361.35 Aligned_cols=330 Identities=19% Similarity=0.329 Sum_probs=291.5
Q ss_pred eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002490 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (916)
Q Consensus 43 ~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~ 122 (916)
+-..+.+|.++|.|++|+|+|..|+||+.|.++++||+.+..+.++.++|...|.|++|+|||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEE-EEEeCCCCceEEEEEec-----CCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceE
Q 002490 123 QSRTCI-SVLTGHNHYVMCASFHP-----KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (916)
Q Consensus 123 ~~~~~~-~~~~~h~~~v~~l~~~p-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (916)
.+|+++ ..+.+|...|++++|.| ..++|++++.||+|+|||+..+. +
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---------------------------~ 239 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---------------------------C 239 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---------------------------E
Confidence 988776 57899999999999987 45699999999999999997744 5
Q ss_pred EEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEc-----------cCC-----
Q 002490 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH-----------AKQ----- 260 (916)
Q Consensus 197 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-----------p~~----- 260 (916)
.+.+.+|..+|+|+.|-.+| +|++|+.|++|++|+...++. ..++++|...|..++++ |.+
T Consensus 240 ~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~--~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL--CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH--HHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 56889999999999998775 899999999999999999987 88999999999998876 223
Q ss_pred --------------------CEEEEEeCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEec
Q 002490 261 --------------------DIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (916)
Q Consensus 261 --------------------~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~ 319 (916)
..|++|+.|.++.+|+.... +++....+|..-|..+.||||++++|+++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS---------- 386 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS---------- 386 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee----------
Confidence 35999999999999997654 47778889999999999999999999998
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 320 ~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
-|++|++|+-.+|+.+..+ .||-. .|..++|+.|.+.+ ++ ++.|.++++|++...
T Consensus 387 ----------------FDkSVkLW~g~tGk~lasf----RGHv~---~VYqvawsaDsRLl-VS-~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 387 ----------------FDKSVKLWDGRTGKFLASF----RGHVA---AVYQVAWSADSRLL-VS-GSKDSTLKVWDVRTK 441 (480)
T ss_pred ----------------cccceeeeeCCCcchhhhh----hhccc---eeEEEEeccCccEE-EE-cCCCceEEEEEeeee
Confidence 5788999999999876654 24433 99999999998743 33 346789999999776
Q ss_pred CCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEc
Q 002490 400 SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKN 440 (916)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwd 440 (916)
.... .+.+|...|.++.|+|||..+++++.|..+++|.
T Consensus 442 Kl~~---DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQ---DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecc---cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5433 5779999999999999999999999999999995
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-41 Score=345.71 Aligned_cols=489 Identities=19% Similarity=0.249 Sum_probs=382.6
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCee--EEEE
Q 002490 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC--LFTL 89 (916)
Q Consensus 12 V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~--~~~l 89 (916)
-.-+.-.|.++.++-. ....|.+-++++......+.+|..+++-..|+|.|-++++|...|+|+|||...... ..++
T Consensus 21 ~~~ig~dpkgd~ilY~-nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef 99 (603)
T KOG0318|consen 21 PIIIGGDPKGDNILYT-NGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEF 99 (603)
T ss_pred ceEeccCCCCCeEEEe-CCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeee
Confidence 3445667888877665 467799999999999999999999999999999999999999999999999875332 2456
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECC--CcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEEEECCCeEEEEECCC
Q 002490 90 LGHLDYIRTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGA 166 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~ 166 (916)
..-.++|..++|+.++++|+..++. +..+++-+.+|..+..+.+|...|.++.|-|... ++++|+.|++|.+|+-..
T Consensus 100 ~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP 179 (603)
T KOG0318|consen 100 QVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP 179 (603)
T ss_pred eecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC
Confidence 6678899999999999999988753 3444555568888999999999999999999765 899999999999998544
Q ss_pred CcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeee-
Q 002490 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR- 245 (916)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 245 (916)
.+ .+.....|..-|+++.|+|||.++++.+.||++.+||-.+++. +..+.
T Consensus 180 FK---------------------------Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~ 230 (603)
T KOG0318|consen 180 FK---------------------------FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELED 230 (603)
T ss_pred ee---------------------------eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecC
Confidence 32 4456778999999999999999999999999999999999886 66665
Q ss_pred --cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee------------------------------------
Q 002490 246 --GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR------------------------------------ 287 (916)
Q Consensus 246 --~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------------------------------ 287 (916)
+|.+.|.+++|+||++.+++++.|.+++|||+.+.++++++.
T Consensus 231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 899999999999999999999999999999998776555543
Q ss_pred -------ccCCcEEEEEEecCCCeEEEEeCCCc-eEEEecCCcc-------------eEEecC-CEEEEE-eCCeEEEEE
Q 002490 288 -------REHDRFWILASHPEMNLLAAGHDSGM-IVFKLERERP-------------AFAVSG-DSLFYA-KDRFLRYYE 344 (916)
Q Consensus 288 -------~~~~~i~~l~~sp~~~~la~g~~~~~-~v~~~~~~~~-------------~~s~~~-~~l~~~-~d~~i~~~d 344 (916)
+|+..|++++.+|++.+|.+|+-+|. .-|....+.. .+.... ..++++ .|.++++.+
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVIS 390 (603)
T ss_pred ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence 67788999999999999998885554 4587766433 223333 566666 889999988
Q ss_pred ccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCC
Q 002490 345 FSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARN 424 (916)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~ 424 (916)
+..+.......++ .++ .+.+++.++++..+++++. +.+.+..-.+... .....-...+++++|++
T Consensus 391 ~~~~~~t~~~~~~-lg~-----QP~~lav~~d~~~avv~~~---~~iv~l~~~~~~~------~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 391 LKDNGYTKSEVVK-LGS-----QPKGLAVLSDGGTAVVACI---SDIVLLQDQTKVS------SIPIGYESSAVAVSPDG 455 (603)
T ss_pred cccCcccccceee-cCC-----CceeEEEcCCCCEEEEEec---CcEEEEecCCcce------eeccccccceEEEcCCC
Confidence 7654332222111 222 6679999999887777765 4565555222111 11123346789999999
Q ss_pred cEEEEEcCCCEEEEEccCCc----eEEEeeCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEE---EEEcCCeeE
Q 002490 425 RFAVLDKSSNQVLVKNLKNE----VVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLG---DLQTPFVKY 495 (916)
Q Consensus 425 ~~l~~~~~d~~I~iwdl~~~----~~~~i~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~---~~~~~~v~~ 495 (916)
.+++.++.|+.|+||.+.+. +.+.+.+..+|+.+++||||.+|++ ..+.+.+||+++++... .++...|.+
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 99999999999999999963 2344555569999999999999999 46799999999998732 234688999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEecCCcc----eEEEeeeeeEEEEEEecCCeEEEE
Q 002490 496 VVWSNDMESVALLS-KHAIIIASKKLVH----QCTLHETIRVKSGAWDDNGVFIYT 546 (916)
Q Consensus 496 v~~s~d~~~la~~~-~~~i~i~~~~~~~----~~~~~~~~~i~s~~w~~~~~~l~~ 546 (916)
++|||++.++|.++ +..|+||+.+.-. +..-| ...|.++.|-++..++-+
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH-~~gVn~v~wlde~tvvSs 590 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH-LGGVNSVAWLDESTVVSS 590 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEccChhhheEecccc-ccCceeEEEecCceEEec
Confidence 99999999999999 8899999976432 11222 334888899876555444
No 10
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-42 Score=372.32 Aligned_cols=656 Identities=19% Similarity=0.281 Sum_probs=449.8
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
+|.+|..|.++|.+++|||+++++++|+.|-.|+||++++.+++.++.+|-.-|+.+.||+.-++++|+|+|.+|+|||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC-----------------------------eEEEEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-----------------------------TCISVL 131 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~-----------------------------~~~~~~ 131 (916)
.+++|+..+.||..+|.|..|+|....++|+|-|++||+||+..- -....+
T Consensus 123 qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999999999999999999999999999999998521 012456
Q ss_pred eCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEE
Q 002490 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (916)
Q Consensus 132 ~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 211 (916)
.||...|.-++|+|.-.++++|+.|..|++|.++..+.- -.-+..+|...|.++-
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-------------------------EvDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-------------------------EVDTCRGHYNNVSSVL 257 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEeccccce-------------------------eehhhhcccCCcceEE
Confidence 799999999999999999999999999999998764322 1235678999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCC
Q 002490 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (916)
Q Consensus 212 ~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 291 (916)
|+|..+++++.+.|++|++||+...+. +.+++......+.++-+|..+++++|- |+-+.||.+....+...+.
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~--v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~---- 330 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTS--VQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVN---- 330 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccc--eeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEc----
Confidence 999999999999999999999999887 888888888999999999999777664 5667777766433322221
Q ss_pred cEEEEEEecCCCeEEEEeCCCceEEEecC-----------Cc--------ceEEecCCEEEEE---eCCeEEEEEccCCc
Q 002490 292 RFWILASHPEMNLLAAGHDSGMIVFKLER-----------ER--------PAFAVSGDSLFYA---KDRFLRYYEFSTQK 349 (916)
Q Consensus 292 ~i~~l~~sp~~~~la~g~~~~~~v~~~~~-----------~~--------~~~s~~~~~l~~~---~d~~i~~~d~~~~~ 349 (916)
++.+....+..++.+++.+ .. ..+.+..+.+..+ ..+...++.+....
T Consensus 331 ----------~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~ 400 (1202)
T KOG0292|consen 331 ----------GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDS 400 (1202)
T ss_pred ----------CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcc
Confidence 1111111122222222222 11 1222222333322 33333344333211
Q ss_pred eee---eEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcE
Q 002490 350 DTQ---VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRF 426 (916)
Q Consensus 350 ~~~---~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~ 426 (916)
... ....+.. ....+-...+ .+++... .+..+.+-++.+.....+. . ...+..+.+...|.+
T Consensus 401 ~~~~~~~~~~k~t-------G~~a~fvarN--rfavl~k-~~~~v~ik~l~N~vtkkl~--~---~~~~~~IF~ag~g~l 465 (1202)
T KOG0292|consen 401 DGVSDGKDVKKGT-------GEGALFVARN--RFAVLDK-SNEQVVIKNLKNKVTKKLL--L---PESTDDIFYAGTGNL 465 (1202)
T ss_pred cccCCchhhhcCC-------CCceEEEEec--ceEEEEe-cCcceEEecccchhhhccc--C---cccccceeeccCccE
Confidence 100 0000110 1112222221 1222222 1234444444333332221 0 112334555555655
Q ss_pred EEEEcCCCEEEEEccCC-ceEEEeeCCCceeEEEEeCCceEEEE-ECCEEEEEEcCCCeEEEEEE-cCCeeEEEEcCCCC
Q 002490 427 AVLDKSSNQVLVKNLKN-EVVKKSILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQ-TPFVKYVVWSNDME 503 (916)
Q Consensus 427 l~~~~~d~~I~iwdl~~-~~~~~i~~~~~v~~l~~s~~g~~l~~-~d~~v~l~d~~~~~~~~~~~-~~~v~~v~~s~d~~ 503 (916)
++.. ...|.++|++. ..+.+++.+ .+.-+.||+|+..++. +..+|.|++. .-+.+.+++ .-.|++-+|..+|-
T Consensus 466 ll~~--~~~v~lfdvQq~~~~~si~~s-~vkyvvws~dm~~vAll~Kh~i~i~~k-kL~l~~sihEtiriksgawde~gV 541 (1202)
T KOG0292|consen 466 LLRS--PDSVTLFDVQQKKKVGSIKVS-KVKYVVWSNDMSRVALLSKHTITIADK-KLELLCSIHETIRIKSGAWDEDGV 541 (1202)
T ss_pred EEEc--CCeEEEEEeecceEEEEEecC-ceeEEEEcCccchhhhcccceEEEEec-chhheecchheeEeeeceeccCce
Confidence 5554 47899999995 555666665 8999999999888877 8889999985 334445554 35799999999998
Q ss_pred EEEEEeCC-eEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCCceEEEEEecceEEEEEE-------
Q 002490 504 SVALLSKH-AIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKV------- 575 (916)
Q Consensus 504 ~la~~~~~-~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~~~~~~------- 575 (916)
++.+..+| ...+-+.+.|.+.++.-++.+..+ .|- ..|++........-+++.+-|.++.
T Consensus 542 fiYtT~nHikYal~~GD~GIikTLd~~iyitkv----~gn--------~V~cl~rd~~~~~~~IDptEy~FKlALi~k~y 609 (1202)
T KOG0292|consen 542 FIYTTLNHIKYALENGDSGIIKTLDKPIYITKV----KGN--------KVFCLNRDGEIECLTIDPTEYRFKLALLNKKY 609 (1202)
T ss_pred EEEEehhhhhhhhccCCcceEEecccceEEEEe----eCC--------EEEEEecCCCeEEEeechHHHHHHHHHHhhhh
Confidence 88777766 333556677777777655444322 111 2233222222222233333222221
Q ss_pred ------------eCC-EEEEEeCCCCeE--EEEeChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCchhh
Q 002490 576 ------------SGN-TIFCLDRDGKNR--AIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVA 640 (916)
Q Consensus 576 ------------~~~-~~~~~~~~~~~~--~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~a 640 (916)
.|. .+-++.+.|... ...+.....+|.+||..|+++.|+...++..- ..++.-|
T Consensus 610 deVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd--~d~w~rL--------- 678 (1202)
T KOG0292|consen 610 DEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDD--KDVWERL--------- 678 (1202)
T ss_pred HHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCc--HHHHHHH---------
Confidence 011 122223333332 23445566889999999999999887776542 1122111
Q ss_pred cccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhh---cCccchhhHHhhcCCHHH
Q 002490 641 LHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT---KNFERLSFLYLITGNMDK 717 (916)
Q Consensus 641 l~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~---~~~~~l~~l~~~~g~~~~ 717 (916)
-+-||..||-++|.-++...++ |++|.-.++-.||.++-.++-..+ +|+-..-...+.+|+.++
T Consensus 679 ----------ge~Al~qgn~~IaEm~yQ~~kn---fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~e 745 (1202)
T KOG0292|consen 679 ----------GEEALRQGNHQIAEMCYQRTKN---FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKE 745 (1202)
T ss_pred ----------HHHHHHhcchHHHHHHHHHhhh---hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHH
Confidence 1468899999999999888764 999999999999988766655443 455555555667788888
Q ss_pred HHHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCC
Q 002490 718 LSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGH 756 (916)
Q Consensus 718 l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~ 756 (916)
-.++.+ .-+....++..+.-.|.-++|.++..+++.
T Consensus 746 rvkIl~---n~g~~~laylta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 746 RVKILE---NGGQLPLAYLTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHH---hcCcccHHHHHHhhcCcHHHHHHHHHhhcc
Confidence 877755 456777888889999999999999888775
No 11
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-42 Score=355.99 Aligned_cols=625 Identities=20% Similarity=0.335 Sum_probs=425.6
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
|+++|+.-.-+|.+..|-+..+|+++|+.|..|+||++.+++.++.|..|..-|++++.||+.++++|+|+|-+|++||+
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 67888998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CeeEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCC--CEEEEEECC
Q 002490 81 KM-HRCLFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE--DLVVSASLD 156 (916)
Q Consensus 81 ~~-~~~~~~l~~h~~~v~~v~fs~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~d 156 (916)
+. ..|.+++.||..+|.+++|+|. .+.+++++-|++|++|.+.+..+..++.+|...|.|+.|-+.| .+|++|+.|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 85 5788999999999999999995 5599999999999999999999999999999999999998865 499999999
Q ss_pred CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002490 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 157 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~ 236 (916)
.++++||..+.... ..++||...|+.+.|+|.-+++++|+.||+++||...+-
T Consensus 207 ~tiKvWDyQtk~CV---------------------------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCV---------------------------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred ceEEEeecchHHHH---------------------------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 99999999885543 378899999999999999999999999999999998887
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEE-----EeC-
Q 002490 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA-----GHD- 310 (916)
Q Consensus 237 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~-----g~~- 310 (916)
+. ..++.-....++|++-.+.+..+++|..+|.|.+ .+-...+...+..... +-|+..+....+ +..
T Consensus 260 ~l--E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gK----Iiwa~~~ei~~~~~ks~~~~~ 332 (794)
T KOG0276|consen 260 KL--EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGK----IIWAVHSEIQAVNLKSVGAQK 332 (794)
T ss_pred eh--hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCcc----EEEEcCceeeeeeceeccCcc
Confidence 76 5555556678999999999889999988887644 4444454444432222 233332222221 111
Q ss_pred ----CCce--------EEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCC
Q 002490 311 ----SGMI--------VFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (916)
Q Consensus 311 ----~~~~--------v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~ 378 (916)
+..+ -..+.......+++|..++++.||.-.+|..-. ++... .+.-....|+++.+
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala--------~RnK~----fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALA--------LRNKA----FGSGLEFVWAADSN 400 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeee--------hhhcc----cccceeEEEcCCCC
Confidence 0000 011111222667788888888888888886322 22111 22556789999977
Q ss_pred EEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC-CceEEEeeCCCceeE
Q 002490 379 AVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADA 457 (916)
Q Consensus 379 ~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~~~~v~~ 457 (916)
..++... ++.+.++.- -..... .... ..+.+.-.|.++...+ ++.+++||.+ +..+++|.. ....
T Consensus 401 e~avRes--~~~vki~kn-fke~ks----i~~~----~~~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v--~~k~ 466 (794)
T KOG0276|consen 401 EFAVRES--NGNVKIFKN-FKEHKS----IRPD----MSAEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEV--TSKH 466 (794)
T ss_pred eEEEEec--CCceEEEec-ceeccc----cccc----cceeeecCCceEEEEe-CCeEEEEEcccceEEEEEee--ccce
Confidence 6666542 367777731 111111 0000 0122333455666666 8999999988 577777776 5789
Q ss_pred EEEeCCceEEEE-ECCEEEEEEc---------CCCeEEEEEE-----------cCCeeEEEEcCC--------CCEEEEE
Q 002490 458 IFYAGTGNLLCR-AEDRVVIFDL---------QQRLVLGDLQ-----------TPFVKYVVWSND--------MESVALL 508 (916)
Q Consensus 458 l~~s~~g~~l~~-~d~~v~l~d~---------~~~~~~~~~~-----------~~~v~~v~~s~d--------~~~la~~ 508 (916)
+.|+.+|.+++. .+...+++.+ ++|..+.+-. ...|+.-.|-.| .+.-...
T Consensus 467 v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~v 546 (794)
T KOG0276|consen 467 VYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLV 546 (794)
T ss_pred eEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEc
Confidence 999999999987 6666665543 3333222210 023444444332 1111111
Q ss_pred eCCeEEEE--ecCCcceEEEeeeeeEEEEEEecCCeEEEEcC---CceeEE-----------ccCCceE----EEEEecc
Q 002490 509 SKHAIIIA--SKKLVHQCTLHETIRVKSGAWDDNGVFIYTTL---NHIKYC-----------LPNGDSG----IIRTLDV 568 (916)
Q Consensus 509 ~~~~i~i~--~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~---~~~~~~-----------l~~~~~~----~i~~~~~ 568 (916)
++...+++ +.....+.-+. .+..+|-.. |.+.|. ++.+|.. .+-++++
T Consensus 547 gGe~~~v~h~~~~mylLgy~~------------~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k 614 (794)
T KOG0276|consen 547 GGETYTVAHLDRIMYLLGYVA------------NDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK 614 (794)
T ss_pred CCceEEEEEeccchhheeeee------------cCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCch
Confidence 22222222 22222222222 222222211 333333 1122211 1111111
Q ss_pred eEEEEEEeCCEEEEEe-CCCCeEEEEe-ChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCchhhcccccC
Q 002490 569 PIYITKVSGNTIFCLD-RDGKNRAIVI-DATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKD 646 (916)
Q Consensus 569 ~~~~~~~~~~~~~~~~-~~~~~~~~~i-~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~~ 646 (916)
+. ..+...++. ...+...+.+ ....++|.+||..++++.|..+....+. ...| +.+-
T Consensus 615 ~~-----rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s----~~Kw---~~Lg--------- 673 (794)
T KOG0276|consen 615 EI-----RTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANS----EVKW---RQLG--------- 673 (794)
T ss_pred hh-----hhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcc----hHHH---HHHH---------
Confidence 11 011111222 2223333444 3456899999999999999998776542 2222 2222
Q ss_pred cchhhhhhhhcCCHHHHHHHH-------------HHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcC
Q 002490 647 ERTRFNLALESGNIQIAVASA-------------KEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITG 713 (916)
Q Consensus 647 ~~~~f~lal~~g~~~~A~~~a-------------~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g 713 (916)
++|+..|++..|.++. ....+.+....||..|.++|.+.+|..||..+|+++.+..|+..++
T Consensus 674 -----~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 674 -----DAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred -----HHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 3455555555555554 3566788899999999999999999999999999999999998888
Q ss_pred CHHHHHHHHH
Q 002490 714 NMDKLSKMLK 723 (916)
Q Consensus 714 ~~~~l~k~~~ 723 (916)
.+.++.-+++
T Consensus 749 r~peAal~Ar 758 (794)
T KOG0276|consen 749 RLPEAALFAR 758 (794)
T ss_pred cCcHHHHHHh
Confidence 8887766643
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-42 Score=365.33 Aligned_cols=475 Identities=18% Similarity=0.294 Sum_probs=388.7
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
..|+|+.-+|+...||+|..||.|+||+..++...-++.+|...|+++.|...|.+|+|||.|+.|.|||+-...-...+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-
Q 002490 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~- 168 (916)
.||.+.|+..-|..+.+++++++.|+.|++||+.+..|..+.-.|.+.+.++++++ +.+++++.|+.+++|++....
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccc
Confidence 99999999999999889999999999999999999999999999999999999987 789999999999999981100
Q ss_pred -----------------------ceec-cCCc-c----------------------------------------------
Q 002490 169 -----------------------KKTV-SPAD-D---------------------------------------------- 177 (916)
Q Consensus 169 -----------------------~~~~-~~~~-~---------------------------------------------- 177 (916)
.... .+.. .
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 0000 0000 0
Q ss_pred ---------------------ceeecccc-cc--c--c-------------cc----ccceEEEEEeccCCCeeEEEEcC
Q 002490 178 ---------------------ILRLSQMN-TD--L--F-------------GG----VDAVVKYVLEGHDRGVNWAAFHP 214 (916)
Q Consensus 178 ---------------------~~~~~~~~-~~--~--~-------------~~----~~~~~~~~~~~~~~~v~~~~~~p 214 (916)
.+.+...+ .. + + +. ....-...+.+|...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 00000000 00 0 0 00 00111245668899999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEE
Q 002490 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (916)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 294 (916)
+...+++|+ .+.+++|+..+.++ +.++.. +.+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.+|
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kc--iRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKC--IRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcce--eEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 987777665 68899999999987 777664 3788999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccC-----CceeeeEEecCCCCCCCCcCCe
Q 002490 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-----QKDTQVIPIRRPGSTSLNQSPR 369 (916)
Q Consensus 295 ~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~i~ 369 (916)
+++.+||+..+++|+ .|++|++||+.- +.....+.+.......+...+.
T Consensus 459 si~~~pD~~g~vT~s--------------------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGS--------------------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred eeeecCCCCceEEec--------------------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 999999999999888 446666666542 1111112222111111233899
Q ss_pred EEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC-CceEEE
Q 002490 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKK 448 (916)
Q Consensus 370 ~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~ 448 (916)
++++||||++++++- -|.++++|-++.-... ..+.+|.-+|.|+..|||++++++++.|.+|+||-++ |.+-++
T Consensus 513 ~v~~Spdgk~LaVsL--LdnTVkVyflDtlKFf---lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSL--LDNTVKVYFLDTLKFF---LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred EEEEcCCCcEEEEEe--ccCeEEEEEecceeee---eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 999999999888765 3579999998765432 2678999999999999999999999999999999999 888888
Q ss_pred eeCCC-ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc--CCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcc
Q 002490 449 SILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLS-KHAIIIASKKLVH 522 (916)
Q Consensus 449 i~~~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~--~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~ 522 (916)
+-.|. .|.++.|-|...++.+ .|+.|+-||-..-+.++.+.+ ..|.+++.+|+|.++++.+ +++|++|....+.
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 88877 8999999998766665 799999999999999999885 7899999999999999999 7899999987554
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.9e-43 Score=368.94 Aligned_cols=478 Identities=15% Similarity=0.231 Sum_probs=391.2
Q ss_pred cccccc-cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC--EEEEEECCCeEEEE
Q 002490 2 LTKFET-KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVW 78 (916)
Q Consensus 2 l~~l~~-h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~--~l~s~~~dg~I~vW 78 (916)
++.+++ |++||..++|+|.+..|++|+.||.|+|||+..+.+...|++|.+.|.++.|+|+-. +|++|..|+.+++|
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 456677 999999999999999999999999999999999999999999999999999999765 58999999999999
Q ss_pred ECCCC-eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecC-----CCEEEE
Q 002490 79 NYKMH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-----EDLVVS 152 (916)
Q Consensus 79 d~~~~-~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~l~s 152 (916)
|+.+. .|+.++..|...|+++.|++|+..+++++.|..+.+||+.+.++..++.- ...+-++.+.++ +.++++
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCCcceEEEE
Confidence 99954 45888899999999999999999999999999999999987777777653 345677777776 669999
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd 232 (916)
++.+|.+++||..+.+....... .. ...+..+...+....++..+.|..+.++|
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~-------------------------~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQ-------------------------SD-SEEIDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred ecCCceEEEEecccchhhhhhcc-------------------------CC-chhhhcceeccccCceEEEEccceEEEEE
Confidence 99999999999988654332111 00 11255555556556677777899999999
Q ss_pred CCCCcceeeeeeecCCCCeEEEEE-ccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe-C
Q 002490 233 MNETKAWEVDTLRGHMNNVSCVMF-HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-D 310 (916)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~v~~l~~-sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-~ 310 (916)
..+.+. ...+.|....|..++| .|+.++|++++..+.+|+|+..+..+. .+.+|.+.|.++....+|-++++|+ |
T Consensus 310 ~~~l~i--~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 310 EDELTI--VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred ccccEE--ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCC
Confidence 988886 7788888899999887 467789999999999999998877665 7889999999999777888888887 7
Q ss_pred CCceEEEecCCcc------------------eEEecC-CEEEEE-eCCeEEEEEccCCcee---eeEEec--CCCCCCCC
Q 002490 311 SGMIVFKLERERP------------------AFAVSG-DSLFYA-KDRFLRYYEFSTQKDT---QVIPIR--RPGSTSLN 365 (916)
Q Consensus 311 ~~~~v~~~~~~~~------------------~~s~~~-~~l~~~-~d~~i~~~d~~~~~~~---~~~~~~--~~~~~~~~ 365 (916)
..+++|+++.... +++..+ ..++.+ .|.++++|++...+.. ..+..+ ...|..
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-- 464 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-- 464 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc--
Confidence 7889999954332 222222 345555 9999999999873221 112111 122323
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC-c
Q 002490 366 QSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-E 444 (916)
Q Consensus 366 ~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~-~ 444 (916)
.|.+++++|+.+.+ ++++.|.+.+||+++.. .+...+.+|...+.++.|++..+.+++++.|.+|+||.+++ .
T Consensus 465 -dIN~Vaia~ndkLi--AT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 465 -DINCVAIAPNDKLI--ATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred -cccceEecCCCceE--EecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce
Confidence 89999999998844 44457789999999832 23336889999999999999999999999999999999995 8
Q ss_pred eEEEeeCCC-ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEE--cCCeeEEEEcCCCCEEEEEe-CCeEEEEe
Q 002490 445 VVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQ--TPFVKYVVWSNDMESVALLS-KHAIIIAS 517 (916)
Q Consensus 445 ~~~~i~~~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~--~~~v~~v~~s~d~~~la~~~-~~~i~i~~ 517 (916)
+++++.+|. .|....|-.+|+.|++ .||-+++|++.+++++.++. ...|..++-++...+++.++ +..|.+|.
T Consensus 539 ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 539 CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999887 8999999999999988 79999999999999999987 47899999999999888877 56677764
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-40 Score=349.12 Aligned_cols=423 Identities=17% Similarity=0.249 Sum_probs=356.0
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCce--EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~--~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
.+++.+|...|+++.|+.|.++|++|+.|-+++||+++..+- ...+.+|.++|.+.-|..++.-+.|.+.||.+.+|.
T Consensus 138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~ 217 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWT 217 (893)
T ss_pred eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEE
Confidence 357889999999999999999999999999999999987665 567789999999999999999999999999999998
Q ss_pred CCC-----------------------Cee-----E------EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 002490 80 YKM-----------------------HRC-----L------FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125 (916)
Q Consensus 80 ~~~-----------------------~~~-----~------~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~ 125 (916)
... ++. . .-+......|++.+||+....|+++-..|...+|.+..-
T Consensus 218 ~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f 297 (893)
T KOG0291|consen 218 CDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF 297 (893)
T ss_pred ecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCc
Confidence 761 111 0 111223468999999999999999999999999999999
Q ss_pred eEEEEEeCCCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC
Q 002490 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (916)
Q Consensus 126 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (916)
.++..+.-...+|..++|+..|++|+.|+.. |.+-||+..+.. ......+|.
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~ 350 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHS 350 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeeccccc
Confidence 9999998888999999999999999998865 789999987632 334667899
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE
Q 002490 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 284 (916)
..+++++++|||+++++|++||.|++||..++-+ +.++..|++.|+.+.|+..|+.+++.+-||+||.||+...+..+
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 9999999999999999999999999999999887 89999999999999999999999999999999999999999999
Q ss_pred EeeccC-CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCC
Q 002490 285 TFRREH-DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (916)
Q Consensus 285 ~~~~~~-~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 363 (916)
++..+. -.+.+++..|.|.++.+|..+. -.|.+|++++|+.+.++. ||
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~-------------------------F~IfvWS~qTGqllDiLs----GH-- 477 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDS-------------------------FEIFVWSVQTGQLLDILS----GH-- 477 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccce-------------------------EEEEEEEeecCeeeehhc----CC--
Confidence 987654 4578899999999999987543 347899999999887764 44
Q ss_pred CCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC
Q 002490 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (916)
Q Consensus 364 ~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~ 443 (916)
.++|.+++|+|.+..+ ++++-|.+|++|++-..... . ..-.+...+..+.|.|+|+-+++++-||.|.+||.+.
T Consensus 478 -EgPVs~l~f~~~~~~L--aS~SWDkTVRiW~if~s~~~-v--Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 478 -EGPVSGLSFSPDGSLL--ASGSWDKTVRIWDIFSSSGT-V--ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred -CCcceeeEEccccCeE--EeccccceEEEEEeeccCce-e--eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 4599999999999954 33446789999998654221 1 2334456689999999999999999999999999873
Q ss_pred -ceEEEee----------------CC-----CceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc
Q 002490 444 -EVVKKSI----------------LP-----IAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT 490 (916)
Q Consensus 444 -~~~~~i~----------------~~-----~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~ 490 (916)
..+.+|. .. ...+.|++|+||..++. ....|++|++.++-+++.+..
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 2222221 11 16889999999999887 578999999999999988763
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-43 Score=352.24 Aligned_cols=274 Identities=23% Similarity=0.436 Sum_probs=263.4
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecC--CCEEEEEECCCeEEEEECCCCe
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS--QPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~--~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
|-+.+|..+.||++++.||+|+-+|.++||+..+...+.+|.+|.+.|.++.|+|. +..+|||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45679999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~ 164 (916)
.+..+.+|...|..++|+|+|++|+|++.|.+-++||+.+++.+....||...|.+++|+|||.++++|+.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeee
Q 002490 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (916)
++++. ...+.+|..+|..++|+|+|..|++|+.|++++|||++..+. +.++
T Consensus 333 Rtgr~---------------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~i 383 (459)
T KOG0272|consen 333 RTGRC---------------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTI 383 (459)
T ss_pred ccCcE---------------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--ceec
Confidence 99774 457889999999999999999999999999999999999887 9999
Q ss_pred ecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 245 RGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 245 ~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
++|.+-|+.+.|+| .|.+|++++.|+++++|...+..+++++.+|.+.|.++..++++..+++++
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 99999999999999 789999999999999999999999999999999999999999999999877
No 16
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=3.1e-41 Score=350.77 Aligned_cols=623 Identities=16% Similarity=0.262 Sum_probs=427.2
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~ 90 (916)
.|..++|-|||..|+.+ .+..+.+||...|..++++++|...|.|++|+.+|++|+||+.|..|.+|+-+-...+ . .
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-Y 90 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-e
Confidence 89999999999988887 4567999999999999999999999999999999999999999999999986532222 2 2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcce
Q 002490 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 91 ~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
.|.+.|.|+.|+|-...|++++-+ ..-+|......... .+ ....+.+++|..||++++.|-.+|+|.+-+-.+..+.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 599999999999999999998864 47788865433221 11 3467889999999999999999999999865443322
Q ss_pred eccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-----CEEEEEECCCcEEEEECCCCcceeeeeee
Q 002490 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-----PLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (916)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (916)
. .....|...+|++++|+|.. ..+++.....++.+|.+.... +..-+
T Consensus 168 ~-------------------------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---Igk~r 219 (1081)
T KOG1538|consen 168 K-------------------------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---IGKDR 219 (1081)
T ss_pred E-------------------------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---ecccc
Confidence 1 11223467899999999963 378888888999999887654 33333
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCce-EEEecCC---
Q 002490 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERE--- 321 (916)
Q Consensus 246 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~-v~~~~~~--- 321 (916)
...-...|+.+.|+|.+++.|+.|+.+.+|. +.|-.+.++-.....||.++.+|+++.++.|+.+|.+ .|++-..
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH 298 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVH 298 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhh
Confidence 3444567999999999999999999999997 5677777777777899999999999999999977654 3433221
Q ss_pred -----cc-----------------------------eEEecCCEEEEEeCCeEEEEEccCCceeeeEE-ecCCCCCCCCc
Q 002490 322 -----RP-----------------------------AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IRRPGSTSLNQ 366 (916)
Q Consensus 322 -----~~-----------------------------~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~ 366 (916)
+- ..+...++|++.-...|.+|.+.+++..++.. ++. .
T Consensus 299 ~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~e----k--- 371 (1081)
T KOG1538|consen 299 GLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKE----K--- 371 (1081)
T ss_pred hhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHH----H---
Confidence 11 23455677777777788899988766544321 111 0
Q ss_pred CCeEEEEc---CCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEE--EEEeCC-cEEEEEcCCCEEEEEc
Q 002490 367 SPRTLSYS---PTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSA--IFIARN-RFAVLDKSSNQVLVKN 440 (916)
Q Consensus 367 ~i~~l~~s---p~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~--~fs~~~-~~l~~~~~d~~I~iwd 440 (916)
-...+.+| -.+++++++.. ..++.+++.+-....- .. .+-|.-+ .=-|-| .-++.+..+|.|.--=
T Consensus 372 I~kkf~cSLlVVc~~HiVlCqe---krLqClDF~Gvk~ReW--~M---~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 372 IIKKFECSLLVVCANHIVLCQE---KRLQCLDFSGVKEREW--QM---ESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred HHhhccceEEEEEcCeEEEEcc---cceeeecccchhhhhh--hH---HHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 11112111 11234444433 5666666543211100 00 0001111 111222 2445555455543332
Q ss_pred cCCceEEEe-eCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCC-CEEEEEeCCeEEEE
Q 002490 441 LKNEVVKKS-ILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDM-ESVALLSKHAIIIA 516 (916)
Q Consensus 441 l~~~~~~~i-~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~-~~la~~~~~~i~i~ 516 (916)
++|...--+ .....|.++..+...+.|++ ..+...++|+.+++.+.+- +++.+|+|+... .+++..+.+.+.|=
T Consensus 444 ~dN~~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE--pg~nSV~wNT~~E~MlcfT~~g~L~VR 521 (1081)
T KOG1538|consen 444 VDNLFPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE--PGANSVAWNTQCEDMLCFTGGGYLNVR 521 (1081)
T ss_pred ecCCchhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec--CCCceEEeeccccceEEEecCCceEEE
Confidence 443221111 22227888888888888877 5567888899999877543 457888888644 34433333322210
Q ss_pred ecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCCceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeCh
Q 002490 517 SKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDA 596 (916)
Q Consensus 517 ~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 596 (916)
... ++. +.-...-|++++.++++||+. .+.|.
T Consensus 522 -----------------~~~------------------~P~------h~qk~~G~VvG~~gsk~FCL~------~~~i~- 553 (1081)
T KOG1538|consen 522 -----------------AST------------------FPV------HRQKLQGFVVGYNGSKIFCLH------VFSIS- 553 (1081)
T ss_pred -----------------ecc------------------CCc------chhcceEEEEEecCceEEEEE------eeeee-
Confidence 000 000 111122378888999999983 11122
Q ss_pred hHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCchhhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHH
Q 002490 597 TEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHW 676 (916)
Q Consensus 597 ~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w 676 (916)
..+-+.+..+++|++..-++|. +.+|+-.+...+ |
T Consensus 554 ---------------------~~evp~~~~m~q~Ieag~f~ea--------------------~~iaclgVv~~D----W 588 (1081)
T KOG1538|consen 554 ---------------------AVEVPQSAPMYQYIERGLFKEA--------------------YQIACLGVTDTD----W 588 (1081)
T ss_pred ---------------------cccccccccchhhhhccchhhh--------------------hcccccceecch----H
Confidence 2222334556677665544444 334444434444 9
Q ss_pred HHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCC
Q 002490 677 YRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGH 756 (916)
Q Consensus 677 ~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~ 756 (916)
+.||..||...++++|.++|.+.+|...|..+ .+|+++.+..+..++. ..+.++.|.|.|.||+++|+++|+
T Consensus 589 ~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li-------~EL~~~k~rge~P~~i-LlA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 589 RELAMEALEALDFETARKAYIRVRDLRYLELI-------SELEERKKRGETPNDL-LLADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccHHHHHH-------HHHHHHHhcCCCchHH-HHHHHHHhhhhHHHHHHHHHHcCc
Confidence 99999999999999999999999999999888 8888886655444444 446888999999999999999999
Q ss_pred chHHHHHHHhcCChHHHHHHHHHhCCCCCC
Q 002490 757 LPLAYITASVHGLQDVAERLAAELGDNVPS 786 (916)
Q Consensus 757 ~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~ 786 (916)
-..|++|+.++.++|.|.+++....+.+.+
T Consensus 661 enRAlEmyTDlRMFD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 661 ENRALEMYTDLRMFDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999999887766544
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.6e-40 Score=311.23 Aligned_cols=279 Identities=21% Similarity=0.392 Sum_probs=260.4
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
+.|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.++-...-|..++|+|.|+++|+||-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 57899999999999999999999999999999999999988988888889999999999999999999999999999986
Q ss_pred C------eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec-CCCEEEEEEC
Q 002490 83 H------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASL 155 (916)
Q Consensus 83 ~------~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~ 155 (916)
. +..+.+.+|.+++.|+.|.+|+ .|+++|.|.+..+||+++++.+..+.+|.+.|+++.++| +++.+++|+-
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 5 4567789999999999999866 699999999999999999999999999999999999999 8999999999
Q ss_pred CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002490 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (916)
Q Consensus 156 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~ 235 (916)
|++.++||++.+. ++..+.+|+..|+++.|.|+|.-|++|++|++.++||++.
T Consensus 208 D~~aklWD~R~~~---------------------------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQ---------------------------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ccceeeeeccCcc---------------------------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999999865 4568899999999999999999999999999999999999
Q ss_pred CcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
.+...+..-..-..+|++++||..|++|++|..|.++.+||.-+++.+..+.+|.++|.++..+|||..+++|+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence 88754555445567899999999999999999999999999999999999999999999999999999999998
No 18
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=326.32 Aligned_cols=531 Identities=17% Similarity=0.197 Sum_probs=406.7
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEec--ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIR 97 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~~~~~~~--~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~ 97 (916)
.|+++++. ..-.|.+||+++|+..+.+. ....+|+|+.-+|+..+||.|..||.|++|+..+.....++.+|...|+
T Consensus 33 ~Gr~va~~-a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVS-ALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEe-ccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 46666653 45679999999996655543 2345899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCcc
Q 002490 98 TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177 (916)
Q Consensus 98 ~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 177 (916)
++.|...|..|++||.|+.|.+||+-...-...+.||+..|+.+-|..+.+++++.+.|+.|++||+.+..
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqh--------- 182 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQH--------- 182 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccce---------
Confidence 99999999999999999999999998888889999999999999999878899999999999999998744
Q ss_pred ceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc----------eeeee-eec
Q 002490 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA----------WEVDT-LRG 246 (916)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~----------~~~~~-~~~ 246 (916)
+..+.-.|...++.+++++ +.+++++.|+.+++|++....- ....+ .+.
T Consensus 183 ------------------Cf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 183 ------------------CFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred ------------------eeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 4456677999999999998 6899999999999999832110 00011 122
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE-------------e---------------------eccCCc
Q 002490 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT-------------F---------------------RREHDR 292 (916)
Q Consensus 247 ~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------~---------------------~~~~~~ 292 (916)
..+..-.+...++++++++-+.|..+.++.+.+...+.. . -....+
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence 233445567777888999999999999998764321100 0 012346
Q ss_pred EEEEEEecCCC---eEEEEeCCCceEEEecCCcc---------------------eEEecCCEE--EEEeCCeEEEEEcc
Q 002490 293 FWILASHPEMN---LLAAGHDSGMIVFKLERERP---------------------AFAVSGDSL--FYAKDRFLRYYEFS 346 (916)
Q Consensus 293 i~~l~~sp~~~---~la~g~~~~~~v~~~~~~~~---------------------~~s~~~~~l--~~~~d~~i~~~d~~ 346 (916)
+.++.|-|.++ .++.-.++.+-.+.++...+ .++.+.+.+ +.+..+++.+|+..
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~ 402 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRD 402 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEcc
Confidence 77788877654 34455566666666655111 333344433 33378999999999
Q ss_pred CCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcE
Q 002490 347 TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRF 426 (916)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~ 426 (916)
+.+++..+... .+.+..|-|.++++++.. .+|.+.+|++....... ....|.+.+.+++.+||++.
T Consensus 403 t~kciRTi~~~---------y~l~~~Fvpgd~~Iv~G~--k~Gel~vfdlaS~~l~E---ti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 403 TLKCIRTITCG---------YILASKFVPGDRYIVLGT--KNGELQVFDLASASLVE---TIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred CcceeEEeccc---------cEEEEEecCCCceEEEec--cCCceEEEEeehhhhhh---hhhccccceeeeeecCCCCc
Confidence 99888776421 778889999999876655 56899999997655433 56699999999999999999
Q ss_pred EEEEcCCCEEEEEccCC--c------------eEEEeeCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc
Q 002490 427 AVLDKSSNQVLVKNLKN--E------------VVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT 490 (916)
Q Consensus 427 l~~~~~d~~I~iwdl~~--~------------~~~~i~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~ 490 (916)
+++++.|.+|++||+.- . ..+++..+..|.++.+||||++||. -|.+|.+|-+.+-+..-++.+
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG 548 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG 548 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc
Confidence 99999999999999861 1 1245666678999999999999998 599999999999998888775
Q ss_pred --CCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcceEE-Ee-eeeeEEEEEEecCCeEEEEcCCceeEEccCCce-EEEE
Q 002490 491 --PFVKYVVWSNDMESVALLS-KHAIIIASKKLVHQCT-LH-ETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS-GIIR 564 (916)
Q Consensus 491 --~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~~~~-~~-~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~-~~i~ 564 (916)
-+|.++..|||+..++.++ +.++.+|-.++|.... ++ ....|.++.|.|...++|+....-++-.+.|+. ..|+
T Consensus 549 HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 549 HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 6899999999999999999 8899999999988543 22 257889999999999999987554444445543 2344
Q ss_pred Eecce---EEEEE--EeCCEEEEEeCCCCeEEEEe
Q 002490 565 TLDVP---IYITK--VSGNTIFCLDRDGKNRAIVI 594 (916)
Q Consensus 565 ~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~i 594 (916)
+++.- ++... ..|+.++...++..++.+.-
T Consensus 629 ~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 44332 23222 24555665556666666554
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=324.03 Aligned_cols=283 Identities=25% Similarity=0.412 Sum_probs=259.3
Q ss_pred ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCC--CCEEEEEECCCcEEEEeCCCCe
Q 002490 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRT 126 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~--~~~l~s~s~dg~I~iwd~~~~~ 126 (916)
+-+.||..+.|++++..|+|||.+|.++||+..+...+.++.+|...|.++.|+|. +..++||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45789999999999999999999999999999999999999999999999999997 5589999999999999999999
Q ss_pred EEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC
Q 002490 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (916)
Q Consensus 127 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (916)
++..+.+|...|..++|+|+|++|+++|.|.+-++||+++.... ...+||..+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El---------------------------L~QEGHs~~ 305 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL---------------------------LLQEGHSKG 305 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh---------------------------Hhhcccccc
Confidence 99999999999999999999999999999999999999986543 256789999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 002490 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (916)
Q Consensus 207 v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 286 (916)
|.+++|+|+|.++++|+.|..-+|||++++++ +..+.+|..+|.++.|+|+|..|++||.|++++|||++....+.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence 99999999999999999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred eccCCcEEEEEEec-CCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCC
Q 002490 287 RREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLN 365 (916)
Q Consensus 287 ~~~~~~i~~l~~sp-~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 365 (916)
..|.+-|..+.|+| .|.+|++++ .|+++++|...+..++..+ .|| .
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~Tas--------------------------yD~t~kiWs~~~~~~~ksL----aGH---e 430 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTAS--------------------------YDNTVKIWSTRTWSPLKSL----AGH---E 430 (459)
T ss_pred ccccchhhheEecccCCeEEEEcc--------------------------cCcceeeecCCCcccchhh----cCC---c
Confidence 99999999999999 667777776 6788999999888776655 344 3
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 366 QSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 366 ~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
+.|.++.++|++..++.++ -|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s--~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSS--FDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEec--cCceeeecc
Confidence 4999999999999766544 567999995
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=291.03 Aligned_cols=284 Identities=24% Similarity=0.435 Sum_probs=244.0
Q ss_pred ccccccCCCEEEEEEeCC-CCEEEEEecCCeEEEEECC-----CCceEEEecccccCEEEEEEecCCCEEEEEECCCeEE
Q 002490 3 TKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYR-----MGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~-~~~la~~~~dg~I~lwd~~-----~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~ 76 (916)
-.+++|++.|+.++..+. ...+++++.|.++.+|++. .|..++.+++|...|..+..+++|++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 468999999999999997 4677888999999999874 5678999999999999999999999999999999999
Q ss_pred EEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCC--CCceEEEEEecC--CCEEEE
Q 002490 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH--NHYVMCASFHPK--EDLVVS 152 (916)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h--~~~v~~l~~~p~--~~~l~s 152 (916)
+||+.+++..+.+.+|...|.+++|++|.+.+++||.|.+|++||... .+..++..+ ...|.|+.|+|+ ..+|++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999864 455555433 789999999998 569999
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd 232 (916)
++.|++|++||+++.+.. ..+.+|.+.++.+++||||.++++|+.||.+.+||
T Consensus 168 ~s~DktvKvWnl~~~~l~---------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLR---------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred ccCCceEEEEccCCcchh---------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 999999999999986644 35677999999999999999999999999999999
Q ss_pred CCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc---------CCcEEEEEEecCCC
Q 002490 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE---------HDRFWILASHPEMN 303 (916)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------~~~i~~l~~sp~~~ 303 (916)
++.++. +.+ .+|...|.+++|+|+.-.|+.+.. ..|+|||+.++..+..++.. .....+++|+++|.
T Consensus 221 L~~~k~--lys-l~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 221 LNEGKN--LYS-LEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred ccCCce--eEe-ccCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 999996 554 457889999999999877776654 56999999998887776532 22356788999998
Q ss_pred eEEEEe-CCCceEEEe
Q 002490 304 LLAAGH-DSGMIVFKL 318 (916)
Q Consensus 304 ~la~g~-~~~~~v~~~ 318 (916)
.|.+|. ++.+.+|.+
T Consensus 297 tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEeeecCCcEEEEEe
Confidence 888876 334444443
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=304.51 Aligned_cols=279 Identities=26% Similarity=0.468 Sum_probs=263.8
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~ 81 (916)
.+++.+|..+|+.+-|||+...+++++.|++|++||+.+|++...+++|...|..|.|+..|+++++++.|-.+++||..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999889999998
Q ss_pred C-CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 82 M-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 82 ~-~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
+ .+|+..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..+..+.||.++++++.|.+|+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 6 688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC---------------CCEEEEEECC
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT---------------LPLIVSGADD 225 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------------~~~l~~~~~d 225 (916)
+|-+.+.+.+ ..+..|+.+|.+++|-|. ++++.+++.|
T Consensus 261 vW~~~t~~~k---------------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 261 VWVVATKQCK---------------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEeccchhh---------------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999886533 367789999999999762 3589999999
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeE
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~l 305 (916)
++|++||+.++.+ +.++.+|.+.|..++|+|.|++|+++..|+++++||++++++..++..|..-+.++.|+.+..++
T Consensus 314 ktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 314 KTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 9999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 002490 306 AAGH 309 (916)
Q Consensus 306 a~g~ 309 (916)
++|+
T Consensus 392 vTGs 395 (406)
T KOG0295|consen 392 VTGS 395 (406)
T ss_pred Eecc
Confidence 9987
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-36 Score=284.66 Aligned_cols=296 Identities=21% Similarity=0.380 Sum_probs=249.5
Q ss_pred ceEEEecccccCEEEEEEecC-CCEEEEEECCCeEEEEECC-----CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q 002490 42 TLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYK-----MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~vWd~~-----~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg 115 (916)
.+..++++|.+.|+.++..+. ...+++++.|.++.+|++. .|..++.+.||...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 445678999999999999887 4578999999999999875 4677899999999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccce
Q 002490 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (916)
Q Consensus 116 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (916)
++++||+.+++..+.+.+|...|++++|+|+.+.+++|+.|.+|.+|++-+..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--------------------------- 138 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--------------------------- 138 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---------------------------
Confidence 99999999999999999999999999999999999999999999999987643
Q ss_pred EEEEEec--cCCCeeEEEEcCC--CCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCc
Q 002490 196 VKYVLEG--HDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271 (916)
Q Consensus 196 ~~~~~~~--~~~~v~~~~~~p~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~ 271 (916)
++.... +...|+++.|+|+ .++|++++.|++|++||+++.+. ...+.+|.+.++.+.+||||.++++|+.||.
T Consensus 139 -k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 139 -KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred -EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCce
Confidence 233333 3678999999998 78999999999999999999887 7788999999999999999999999999999
Q ss_pred EEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCcee
Q 002490 272 IRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (916)
Q Consensus 272 i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~ 351 (916)
+.+||++.++.++.+. +...|.+++|+|+...|+.+.+.++. +||+.++..+
T Consensus 216 ~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIk---------------------------Iwdl~~~~~v 267 (315)
T KOG0279|consen 216 AMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIK---------------------------IWDLESKAVV 267 (315)
T ss_pred EEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceE---------------------------EEeccchhhh
Confidence 9999999999988876 67889999999999999988765555 5555544444
Q ss_pred eeEEecCCCCCCC--CcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEee
Q 002490 352 QVIPIRRPGSTSL--NQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (916)
Q Consensus 352 ~~~~~~~~~~~~~--~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~ 397 (916)
..+.+...+...- .....+++|+++|..|+... .++.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEee
Confidence 3333332222000 11456789999999876544 45799999874
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.7e-36 Score=284.66 Aligned_cols=287 Identities=20% Similarity=0.337 Sum_probs=257.9
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~ 123 (916)
.+++++|.+.|.++.|++|++++++++.||.+.|||.-+....+.+.-....|..++|+|.|+++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37889999999999999999999999999999999999888888888889999999999999999999999999999998
Q ss_pred CC------eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEE
Q 002490 124 SR------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (916)
Q Consensus 124 ~~------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (916)
+. +..+.+.+|.+++.|+.|.+ ...|+++|.|.+..+||++++++.
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~--------------------------- 179 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT--------------------------- 179 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE---------------------------
Confidence 65 45567899999999999987 458999999999999999987754
Q ss_pred EEEeccCCCeeEEEEcC-CCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002490 198 YVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (916)
Q Consensus 198 ~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd 276 (916)
..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+ ++++.+|...|.++.|.|+|.-+++|+.|++.|+||
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 37789999999999999 999999999999999999999987 999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecc--CCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeE
Q 002490 277 VTKRTGVQTFRRE--HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (916)
Q Consensus 277 ~~~~~~~~~~~~~--~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~ 354 (916)
++..+.+..+... ..+|++++||..|++|.+|. .|..+.+||.-.++....+
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy--------------------------~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY--------------------------DDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeee--------------------------cCCceeEeeccccceEEEe
Confidence 9999988888744 35789999999999999887 4677899999888776666
Q ss_pred EecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
. || ..+|+++..+|||. ++++++-|..++||.
T Consensus 312 ~----GH---eNRvScl~~s~DG~--av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 A----GH---ENRVSCLGVSPDGM--AVATGSWDSTLRIWA 343 (343)
T ss_pred e----cc---CCeeEEEEECCCCc--EEEecchhHheeecC
Confidence 4 44 33999999999988 566777778999983
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-35 Score=299.00 Aligned_cols=324 Identities=19% Similarity=0.320 Sum_probs=280.5
Q ss_pred cccCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCC----ceEEEec------c----cccCEEEEEEecCCCEEEEEE
Q 002490 6 ETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMG----TLIDRFD------E----HDGPVRGVHFHKSQPLFVSGG 70 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~-~la~~~~dg~I~lwd~~~~----~~~~~~~------~----h~~~V~~i~fsp~~~~l~s~~ 70 (916)
..|.++|.+.+|+|-.. .+++|+.+...++|++... .....|+ + ....|++++|+.+|.+||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999776 8999999999999998641 1111111 1 235699999999999999999
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEE
Q 002490 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150 (916)
Q Consensus 71 ~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 150 (916)
.||.+++|+. +|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..+++....+.-|..+-..+.|-. ...+
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F 332 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEF 332 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceE
Confidence 9999999996 5788899999999999999999999999999999999999999999999999988877888974 4579
Q ss_pred EEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEE
Q 002490 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230 (916)
Q Consensus 151 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~i 230 (916)
++++.|+.|+|+.+...+.. ..+.+|.+.|+++.|+|.+.+|+++++|++++|
T Consensus 333 ~ts~td~~i~V~kv~~~~P~---------------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPV---------------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI 385 (524)
T ss_pred eecCCCceEEEEEecCCCcc---------------------------eeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence 99999999999998775432 367789999999999999999999999999999
Q ss_pred EECCCCcceeeeeeecCCCCeEEEEEccCC---------CEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---------DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
|.+..... ...+..|...|..+.|+|.| ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+
T Consensus 386 Ws~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 386 WSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred eecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 99888776 88899999999999999964 47999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEE
Q 002490 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (916)
Q Consensus 302 ~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~ll 381 (916)
++++|+|+ .++.|.+|+..+++......- ...|..++|+.+|..+.
T Consensus 464 g~ylAsGs--------------------------~dg~V~iws~~~~~l~~s~~~--------~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 464 GRYLASGS--------------------------LDGCVHIWSTKTGKLVKSYQG--------TGGIFELCWNAAGDKLG 509 (524)
T ss_pred CcEEEecC--------------------------CCCeeEeccccchheeEeecC--------CCeEEEEEEcCCCCEEE
Confidence 99999998 567789999999877655421 22789999999999877
Q ss_pred EEEcCCCCEEEEEEe
Q 002490 382 ICSDVDGGSYELYVI 396 (916)
Q Consensus 382 v~~~~~~g~i~i~~~ 396 (916)
++.. ++.+.+.++
T Consensus 510 ~~~s--d~~vcvldl 522 (524)
T KOG0273|consen 510 ACAS--DGSVCVLDL 522 (524)
T ss_pred EEec--CCCceEEEe
Confidence 6654 467777665
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-36 Score=292.51 Aligned_cols=276 Identities=25% Similarity=0.469 Sum_probs=247.4
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
+-+.+|.+.|.|+++.|-.+|+++|+.|++|.|||+.+|++..++.+|-..|+.+++|+-.+|+.+++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 83 ~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
.+.++.+.||...|.|++.+|.-..|++|+.|.++++||+++...+.++.||..+|.++.+.|....+++||.|++|++|
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeee
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (916)
|++.++.. ..+..|...|.+++.+|....+++++.|. |+-|++..+.. +.
T Consensus 305 Dl~agkt~---------------------------~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f--~~ 354 (460)
T KOG0285|consen 305 DLRAGKTM---------------------------ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF--LQ 354 (460)
T ss_pred eeccCcee---------------------------EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch--hh
Confidence 99887643 36778999999999999999999988765 89999999987 77
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc--------CCcEEEEEEecCCCeEEEEe
Q 002490 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE--------HDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 243 ~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~l~~sp~~~~la~g~ 309 (916)
.+.+|...|.+++...|+ ++++|+.+|.+.+||.+++...+..... ...|.+.+|...+..|++|.
T Consensus 355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 799999999999998765 7899999999999999998766654211 12345555555555555443
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-36 Score=323.34 Aligned_cols=246 Identities=27% Similarity=0.545 Sum_probs=228.7
Q ss_pred cccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-------------------------------ceEEEecccccCE
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-------------------------------TLIDRFDEHDGPV 54 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~-------------------------------~~~~~~~~h~~~V 54 (916)
..-...++|..|++|+..||.|..|..|++|.+... ....++-+|.+||
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 333467999999999999999999999999998631 1234567899999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCC
Q 002490 55 RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134 (916)
Q Consensus 55 ~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h 134 (916)
.++.|+|+.++|++++.|++|++|++.+..++..+.||..+|+.+.|+|-|-++||+|.|++-++|......+.+.+.+|
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcC
Q 002490 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (916)
Q Consensus 135 ~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 214 (916)
.+.|.|+.|||+.+++++||.|.+||+||+.++.. ...+.||.++|.+++|+|
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---------------------------VRiF~GH~~~V~al~~Sp 587 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---------------------------VRIFTGHKGPVTALAFSP 587 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcE---------------------------EEEecCCCCceEEEEEcC
Confidence 99999999999999999999999999999988653 347789999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
+|++|++|+.||.|.+||+.+++. +..+.+|.+.|.++.|+.+|..|++++.|.+|++||+...
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999987 8999999999999999999999999999999999998754
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-35 Score=270.82 Aligned_cols=279 Identities=17% Similarity=0.370 Sum_probs=245.4
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe--eEEEEecCCCCEEEE
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTV 99 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~--~~~~l~~h~~~v~~v 99 (916)
-+|++++.|.+|++|...+|.+.++++-.++.|+.+...|+++.||+++. ..|++||+.++. ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47889999999999999999999999988899999999999999999886 489999999764 588999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccce
Q 002490 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (916)
Q Consensus 100 ~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 179 (916)
.|..+|+++++|++||+++|||+++..+.+.+. |..+|+++..+|+...|++|..+|.|++||+.......
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~-------- 160 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH-------- 160 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--------
Confidence 999999999999999999999999977766666 77999999999999999999999999999998753221
Q ss_pred eeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc----ceeeeeeecCCCCeEEEE
Q 002490 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK----AWEVDTLRGHMNNVSCVM 255 (916)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~l~ 255 (916)
.........|.++...|+|.+++.+...|..++|++-+.. ..++..++.|.+-+..+.
T Consensus 161 ------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 161 ------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred ------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 1222344678999999999999999999999999987643 235677889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEE
Q 002490 256 FHAKQDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (916)
Q Consensus 256 ~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~ 334 (916)
+||++++|+++|.|.+++||+..+. +.-..+.++...+|..+||.++.+|++|+
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas------------------------- 277 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS------------------------- 277 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC-------------------------
Confidence 9999999999999999999999887 55566778888999999999999999988
Q ss_pred EeCCeEEEEEccCCceeeeE
Q 002490 335 AKDRFLRYYEFSTQKDTQVI 354 (916)
Q Consensus 335 ~~d~~i~~~d~~~~~~~~~~ 354 (916)
.|+.+++|++..++.+...
T Consensus 278 -sd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 278 -SDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred -CCCceeecccccCceeeec
Confidence 4577899999988765543
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-35 Score=296.59 Aligned_cols=268 Identities=21% Similarity=0.380 Sum_probs=247.1
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
..|++++|+.+|..||+|..||.++||+ .+|.++.++..|++||.++.|+.+|.+|++++.|+++.+||..++...+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 689999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q 002490 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~ 169 (916)
.-|..+-..|.|-.+. .+++++.|+.|+++.+....++.++.+|.++|.++.|+|.+.+|+++|.|+++++|.......
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 8898887788887665 589999999999999999999999999999999999999999999999999999999866432
Q ss_pred eeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC---------EEEEEECCCcEEEEECCCCccee
Q 002490 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
...+..|...|..+.|+|+|+ .+++++.|++|++||...+.+
T Consensus 394 ---------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-- 444 (524)
T KOG0273|consen 394 ---------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-- 444 (524)
T ss_pred ---------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce--
Confidence 336778999999999999765 689999999999999999997
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 241 ~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
+.++..|..+|.+++|+|+|+++++|+.||.|.+|+.++++..+.+.. .+.|..++|+.+|+.+.++.
T Consensus 445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence 899999999999999999999999999999999999999999998874 45589999999999887654
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=271.60 Aligned_cols=280 Identities=25% Similarity=0.397 Sum_probs=239.0
Q ss_pred cccccccCCCEEEEEEeCC-CCEEEEEecCCeEEEEECCCC---ceEEEe-cccccCEEEEEEecCCCEEEEEECCCeEE
Q 002490 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMG---TLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~-~~~la~~~~dg~I~lwd~~~~---~~~~~~-~~h~~~V~~i~fsp~~~~l~s~~~dg~I~ 76 (916)
++++++|.++|..++|||- |..||+++.|..|++|+...+ .+...+ .+|+..|++++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5789999999999999998 889999999999999998743 444444 37999999999999999999999999999
Q ss_pred EEECC--CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEEeCCCCceEEEEEecCCCEEE
Q 002490 77 VWNYK--MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVV 151 (916)
Q Consensus 77 vWd~~--~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~~p~~~~l~ 151 (916)
||.-. ..+++.++.||...|.+++|+++|.+||+++.|+.|.||.+..+ .++..++.|...|..+.|||...+|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 99865 34789999999999999999999999999999999999998743 67889999999999999999999999
Q ss_pred EEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEE
Q 002490 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (916)
Q Consensus 152 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iw 231 (916)
++|.|.+|++|+-... .+-.+...+.+|...|.+++|+|.|..|+++++|++|+||
T Consensus 167 S~SYDnTIk~~~~~~d------------------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDD------------------------DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred EeccCCeEEEEeecCC------------------------CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 9999999999986521 2445677899999999999999999999999999999999
Q ss_pred ECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce------e-EEeeccCCcEEEEEEecC-CC
Q 002490 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG------V-QTFRREHDRFWILASHPE-MN 303 (916)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~------~-~~~~~~~~~i~~l~~sp~-~~ 303 (916)
.....- ...|...+..+.|. ...|++++.|+.|++|.-...-. + ..-..|...|.+++|.|. .+
T Consensus 223 ~~~~~~------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 223 RLYTDL------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eeccCc------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence 866332 23477889999998 45899999999999997664211 1 112356678999999994 67
Q ss_pred eEEEEeCCCc
Q 002490 304 LLAAGHDSGM 313 (916)
Q Consensus 304 ~la~g~~~~~ 313 (916)
+|++|+++|+
T Consensus 295 ~L~s~~DDG~ 304 (312)
T KOG0645|consen 295 RLASGGDDGI 304 (312)
T ss_pred ceeecCCCce
Confidence 8888886554
No 30
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=295.89 Aligned_cols=683 Identities=11% Similarity=0.120 Sum_probs=456.5
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc---------------eEEEecccccCEEEEEEecCCCEEEEEECCCe
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT---------------LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~---------------~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~ 74 (916)
....|++|+....++|+|+.||.+++..+.+.+ ..+++++|.+.|.-+.|+.+.+.|-|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 567899999999999999999999999875432 33577899999999999999999999999999
Q ss_pred EEEEECCCCeeEEEE--ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EEeCCCCceEEEEEecCCCEEE
Q 002490 75 IKVWNYKMHRCLFTL--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVV 151 (916)
Q Consensus 75 I~vWd~~~~~~~~~l--~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~ 151 (916)
|.||-+-.+.....+ ....+.|.+++|+.||+.++....||.|.+=.+...+... .+++ .....+.|++|...++
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL 172 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHH
Confidence 999998877655443 2356689999999999999999999999887775443221 2222 2234688999999888
Q ss_pred EEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEE--------cCCCCEEEEEE
Q 002490 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF--------HPTLPLIVSGA 223 (916)
Q Consensus 152 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~p~~~~l~~~~ 223 (916)
.+-.+|.+.++|..+.-....... ..+ ...-.+......|..+.| -|+.+.|+++.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~---c~V-------------n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKD---CEV-------------NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhc---eEE-------------eeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 888899999999876422211000 000 000011111122333444 35888999999
Q ss_pred CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC---------cEEEEECCCCceeEEeeccCCcEE
Q 002490 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK---------SIRVWDVTKRTGVQTFRREHDRFW 294 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~~~~i~ 294 (916)
..|.+.|.+-.+.... +. ....-.+..+.|+++|..|++++.+. .|.+|. .-|..+.+++.+...|+
T Consensus 237 ~nGr~QiMR~eND~~P-vv--~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEP-VV--VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred cCceehhhhhcCCCCC-eE--EecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 9999999876655531 21 22235688999999999999998643 466665 35788889999999999
Q ss_pred EEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEE------eCCeEEEEEccCCceeeeEEecCCCCCCCCcCC
Q 002490 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA------KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (916)
Q Consensus 295 ~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (916)
+++|-..|-.+|.+-++-+.+-++..+-. +..-.+.++++ ....|.+||..+.+..... + . +.
T Consensus 313 ~lsWEg~gLriA~AvdsfiyfanIRP~yk-Wgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~-V------~---~~ 381 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAVDSFIYFANIRPEYK-WGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT-V------T---HF 381 (1189)
T ss_pred eeEEcCCceEEEEEecceEEEEeecccce-EEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh-h------c---ce
Confidence 99999999999998888777666654443 33333444444 2346889999886532211 1 0 44
Q ss_pred eEEEEcCCCCEEEEEEcCCCCEEEEEEe-eC----------CCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEE
Q 002490 369 RTLSYSPTENAVLICSDVDGGSYELYVI-PK----------DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVL 437 (916)
Q Consensus 369 ~~l~~sp~~~~llv~~~~~~g~i~i~~~-~~----------~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~ 437 (916)
.+++++.+ +.++....++|.+.-++. .. ++.+. +.+.....|...-..-++.+++.++ ...+.
T Consensus 382 ~~~a~~~e--hCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT---~lD~kytdirP~Fv~vn~~~vviAS-~e~~~ 455 (1189)
T KOG2041|consen 382 ENMAFYRE--HCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGT---SLDYKYTDIRPKFVCVNGICVVIAS-EERYF 455 (1189)
T ss_pred eehheecc--cEEEEeccccCCCcchhhhhcccceEEEeeecccCC---cCCCCcceeeeeEEEecceEEEEec-cccEE
Confidence 56677665 334444445555543311 00 01111 1222222233222223456777777 56677
Q ss_pred EEccCCc--------------------------e-------EEEeeCCC-ceeEEEEeCCceEEEEECCEEEEEEcCCCe
Q 002490 438 VKNLKNE--------------------------V-------VKKSILPI-AADAIFYAGTGNLLCRAEDRVVIFDLQQRL 483 (916)
Q Consensus 438 iwdl~~~--------------------------~-------~~~i~~~~-~v~~l~~s~~g~~l~~~d~~v~l~d~~~~~ 483 (916)
||..... . .+++.+.. +|..++.|..-.+++...|.|+-|.+...-
T Consensus 456 iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~ 535 (1189)
T KOG2041|consen 456 IWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVV 535 (1189)
T ss_pred EEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecceEEEEEeccCceEEEEeccee
Confidence 7764210 0 01222222 677777776655555589999999999988
Q ss_pred EEEEEE-cCCeeEEEEcCCCCEEEEEe-CCeEEEEecC----CcceEEE--eeeeeEEEEEEecCCeEEEEcCCceeEEc
Q 002490 484 VLGDLQ-TPFVKYVVWSNDMESVALLS-KHAIIIASKK----LVHQCTL--HETIRVKSGAWDDNGVFIYTTLNHIKYCL 555 (916)
Q Consensus 484 ~~~~~~-~~~v~~v~~s~d~~~la~~~-~~~i~i~~~~----~~~~~~~--~~~~~i~s~~w~~~~~~l~~t~~~~~~~l 555 (916)
...+.. ...+.++..+.+.+.+|+.. -+.+.+.|.+ ..++.-+ .+...|+...|..++..++.-....+.++
T Consensus 536 l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyi 615 (1189)
T KOG2041|consen 536 LTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYI 615 (1189)
T ss_pred eeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEE
Confidence 888777 47789999999999999887 5666665544 3333322 34667889999999888887655555554
Q ss_pred cCCceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCcccc-hhHHHHHHHC
Q 002490 556 PNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCG-QAMIAYLQQK 634 (916)
Q Consensus 556 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~ 634 (916)
..|-. ........-|++.+.+-.+ ....+|. ++....+.. ..|+.+
T Consensus 616 frgnd-peEp~s~sGyIc~FedLei---------tsVlld~-------------------Il~~pE~pnk~~ii~~---- 662 (1189)
T KOG2041|consen 616 FRGND-PEEPSSVSGYICLFEDLEI---------TSVLLDK-------------------ILLTPENPNKTCIIEV---- 662 (1189)
T ss_pred ecCcC-ccccccccceEEEeeceEE---------EEEEHhh-------------------HhcCcCCCCcceEEEE----
Confidence 44321 1111122225544443222 2222221 111111100 001100
Q ss_pred CCchhhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCC
Q 002490 635 GFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGN 714 (916)
Q Consensus 635 ~~~e~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~ 714 (916)
.-+....-.-.++.-.++.|.+.+....+|.+|+.||+.|+....++.||.+|.|++||.++-++
T Consensus 663 ---------~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~v------ 727 (1189)
T KOG2041|consen 663 ---------MIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLV------ 727 (1189)
T ss_pred ---------EehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHH------
Confidence 00000111223455559999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCCCCC
Q 002490 715 MDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPS 786 (916)
Q Consensus 715 ~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~ 786 (916)
.+|+++. .+.+.++++..|.|.|+||+++|.++.+-++|++|+++.|+|..+.+|.+..+.+..+
T Consensus 728 -krl~~i~------s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD 792 (1189)
T KOG2041|consen 728 -KRLRTIH------SKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDD 792 (1189)
T ss_pred -HHhhhhh------hHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcch
Confidence 7777773 3344567888999999999999999999999999999999999999999887665543
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=282.82 Aligned_cols=312 Identities=17% Similarity=0.303 Sum_probs=263.6
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~ 81 (916)
++.|..|+.+|.+++.+|+.+++++|+.|..-.||+..+|.....+.+|+..|+++.||.+|.+||||+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 82 ~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
++.....+...-..|.-+.|||.+..|+.|+.||.+..|.+.++...+.+.+|+.++++-.|.|+|+.++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99998888777788999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCcceeccCCcc-----ceeecccc-----------ccccccccceEEEEEe--------ccCCCeeE---EEEcC
Q 002490 162 WDIGALRKKTVSPADD-----ILRLSQMN-----------TDLFGGVDAVVKYVLE--------GHDRGVNW---AAFHP 214 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~--------~~~~~v~~---~~~~p 214 (916)
|++.++.......... ........ ....+...+.+..... .+...+.+ +.++.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 9999987655443111 11111111 1112222233333333 34444444 44555
Q ss_pred CCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEE
Q 002490 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (916)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 294 (916)
.-++.++|+-||+|.|||+...+ ++..-.|...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 66789999999999999999887 566667889999999998 78999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeCCC-ceEEE
Q 002490 295 ILASHPEMNLLAAGHDSG-MIVFK 317 (916)
Q Consensus 295 ~l~~sp~~~~la~g~~~~-~~v~~ 317 (916)
.++.+|+.++++++++++ ..+|+
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEe
Confidence 999999999999887543 33444
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=301.35 Aligned_cols=271 Identities=26% Similarity=0.460 Sum_probs=241.6
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
..|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++++.+++||+.+|.|++|+..- ..+..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHh
Confidence 4788999999999999999999999999755444455678999999999999999999999999999999763 444445
Q ss_pred ecCC-CCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 002490 90 LGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (916)
Q Consensus 90 ~~h~-~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~ 168 (916)
..|. ..|++++|+|+...+++||+||+|+|||....+.-..+.+|.-.|.|+.|+|...+++++|.|..|++||.++++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 5554 899999999999999999999999999999888888999999999999999999999999999999999999876
Q ss_pred ceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC
Q 002490 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (916)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (916)
.. ..+.+|...|..+.|+|++++|++++.|..++++|+++.+. +.++++|.
T Consensus 256 cl---------------------------~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hk 306 (464)
T KOG0284|consen 256 CL---------------------------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHK 306 (464)
T ss_pred hh---------------------------hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--HHHhhcch
Confidence 44 36778999999999999999999999999999999997665 89999999
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEee-ccCCcEEEEEEecCCCeEEEEeC
Q 002490 249 NNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHD 310 (916)
Q Consensus 249 ~~v~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~la~g~~ 310 (916)
..|+++.|+| ...+|.+|+.||.|..|.+...+++..+. .|...||+++|+|=|.+|++|+.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 9999999999 56788999999999999998666655554 56778999999999999999883
No 33
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=296.44 Aligned_cols=506 Identities=16% Similarity=0.215 Sum_probs=354.7
Q ss_pred ccccCCCEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC--CCeEEEEEC
Q 002490 5 FETKSNRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVWNY 80 (916)
Q Consensus 5 l~~h~~~V~~l~~sp~~~~la~~~--~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~--dg~I~vWd~ 80 (916)
+..|..+++|++||++|+|+|+|- ....+++|++.....+..|..|+-.|+|++|+|.++++++.|. |-.|.+||+
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dW 153 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDW 153 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhh
Confidence 345677999999999999999984 6678999999999999999999999999999999999998875 567888988
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-------------------------------
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS------------------------------- 129 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~------------------------------- 129 (916)
+....... ..-...|..++|+.+|.|+++++ ...|++|.++.++...
T Consensus 154 r~N~~~as-nkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 154 RVNSSGAS-NKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hhcccccc-cccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 74433322 22356789999999999999987 5689999987543110
Q ss_pred ----EE--eCCC-----------------CceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccc
Q 002490 130 ----VL--TGHN-----------------HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186 (916)
Q Consensus 130 ----~~--~~h~-----------------~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 186 (916)
.+ .||- ....|++. +.++|++|+.+|+|++|+..+..-....|....+.....+.
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence 00 0110 11223433 36799999999999999998877666655443332111110
Q ss_pred cccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc-eeeeeeecCCCCeEEEEEccC------
Q 002490 187 DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK------ 259 (916)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~------ 259 (916)
... +......-.+.-....++.|+|+...+.+...|..+++||+++.+. .....+.-|...|+.+.--|-
T Consensus 310 ~q~---~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~ 386 (1080)
T KOG1408|consen 310 SQP---EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT 386 (1080)
T ss_pred ccc---cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcc
Confidence 000 0000001112223455788999999999999999999999987543 124445567777776655441
Q ss_pred -----CCEEEEEeCCCcEEEEECCCCceeEEee-------------------------------------ccCCcEEEEE
Q 002490 260 -----QDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------------------------------REHDRFWILA 297 (916)
Q Consensus 260 -----~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------------------------~~~~~i~~l~ 297 (916)
...+++++.|++||+|++..+..-+.++ .....+.+++
T Consensus 387 ~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~ 466 (1080)
T KOG1408|consen 387 AACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA 466 (1080)
T ss_pred cccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE
Confidence 1258899999999999987633222211 1224589999
Q ss_pred EecCCCeEEEEeCC-CceEEEecCCcc------------eEEe-----cCCEEEEE-eCCeEEEEEccCCceeeeEEecC
Q 002490 298 SHPEMNLLAAGHDS-GMIVFKLERERP------------AFAV-----SGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRR 358 (916)
Q Consensus 298 ~sp~~~~la~g~~~-~~~v~~~~~~~~------------~~s~-----~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~ 358 (916)
.+|++++||+|... .+.++++..-+. ++.. ....|+.+ .|+-|++||....-. ....+..
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~ 545 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDG 545 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhhcc
Confidence 99999999999854 466787765432 1111 12344555 999999999876322 2223333
Q ss_pred CCCCCCCcCCeEEEEcCCC-CEEEEEEcCCCCEEEEEEeeCCCCCCCc--cccccccCceeEEEEEeCCcEEEEEcCCCE
Q 002490 359 PGSTSLNQSPRTLSYSPTE-NAVLICSDVDGGSYELYVIPKDSIGRGD--SVQDAKKGLGGSAIFIARNRFAVLDKSSNQ 435 (916)
Q Consensus 359 ~~~~~~~~~i~~l~~sp~~-~~llv~~~~~~g~i~i~~~~~~~~~~~~--~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~ 435 (916)
| ...|+++.|.-+| +.-+++++ .|..+.+-...+...+.+. .........+..++..|..++++++..|..
T Consensus 546 --H---SssITsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 546 --H---SSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred --c---ccceeEEEEeecCCceEEEecc-CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 3 2299999998776 23334444 3334433222222222221 011223455788899999999999999999
Q ss_pred EEEEccC-CceEEEeeCCC----ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc--CCeeEEEEcCCCCEEE
Q 002490 436 VLVKNLK-NEVVKKSILPI----AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVA 506 (916)
Q Consensus 436 I~iwdl~-~~~~~~i~~~~----~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~--~~v~~v~~s~d~~~la 506 (916)
|+||+++ ++.++.++... ....+...|.|.++++ +|+++.+||..+|+++++..+ .-|+.+.|++|.++|.
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence 9999999 57788887654 6778889999999998 799999999999999999874 6799999999999999
Q ss_pred EEe-CCeEEEEecCCcceE
Q 002490 507 LLS-KHAIIIASKKLVHQC 524 (916)
Q Consensus 507 ~~~-~~~i~i~~~~~~~~~ 524 (916)
+++ ++.|+||....+.+.
T Consensus 700 SvsgDgCIFvW~lp~~mii 718 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPLTMII 718 (1080)
T ss_pred eecCCceEEEEECchhHhH
Confidence 888 889999998866543
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=263.32 Aligned_cols=295 Identities=23% Similarity=0.417 Sum_probs=234.6
Q ss_pred ceEEEecccccCEEEEEEecC-CCEEEEEECCCeEEEEECCC---CeeEEEE-ecCCCCEEEEEEcCCCCEEEEEECCCc
Q 002490 42 TLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKM---HRCLFTL-LGHLDYIRTVQFHHEYPWIVSASDDQT 116 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~vWd~~~---~~~~~~l-~~h~~~v~~v~fs~~~~~l~s~s~dg~ 116 (916)
..++.+++|.++|..++|+|. |..|+|+|.|..|++|+... -.|...+ .+|...|+.++|+|.|++|+++|.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 346778899999999999998 89999999999999999884 3444444 379999999999999999999999999
Q ss_pred EEEEeCCC--CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccc
Q 002490 117 IRIWNWQS--RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (916)
Q Consensus 117 I~iwd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (916)
+.||.-.. -+++.++.||...|.|++|+++|++|++++.|++|-+|.+..... -
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE------------------------f 140 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE------------------------F 140 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc------------------------E
Confidence 99997653 378899999999999999999999999999999999999875332 2
Q ss_pred eEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECC-CCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 002490 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (916)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~ 273 (916)
.+..++++|...|..+.|||...+|++++.|++|++|+-. ...-..+.++.+|.+.|.+++|+|.|..|++++.|++++
T Consensus 141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 3566899999999999999999999999999999999987 443335788999999999999999999999999999999
Q ss_pred EEECCCCceeEEeeccCCcEEEEEEecCCCeEEEE-eCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceee
Q 002490 274 VWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG-HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (916)
Q Consensus 274 vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g-~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~ 352 (916)
||...+.-. ..+...++.++|. + ..|+++ .|+.+++|+ -......+
T Consensus 221 Iw~~~~~~~----~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~---------------------------~s~~~d~p 267 (312)
T KOG0645|consen 221 IWRLYTDLS----GMHSRALYDVPWD-N-GVIASGGGDDAIRLFK---------------------------ESDSPDEP 267 (312)
T ss_pred eeeeccCcc----hhcccceEeeeec-c-cceEeccCCCEEEEEE---------------------------ecCCCCCc
Confidence 998652211 2245678889997 4 455554 444444443 32211111
Q ss_pred eEE---ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEee
Q 002490 353 VIP---IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (916)
Q Consensus 353 ~~~---~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~ 397 (916)
.+. -....| ...|.+++|+|.+..++++++ +||.+++|.+.
T Consensus 268 ~~~l~~~~~~aH---e~dVNsV~w~p~~~~~L~s~~-DDG~v~~W~l~ 311 (312)
T KOG0645|consen 268 SWNLLAKKEGAH---EVDVNSVQWNPKVSNRLASGG-DDGIVNFWELE 311 (312)
T ss_pred hHHHHHhhhccc---ccccceEEEcCCCCCceeecC-CCceEEEEEec
Confidence 111 111222 348999999997566566665 78999999873
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.5e-33 Score=295.03 Aligned_cols=282 Identities=31% Similarity=0.581 Sum_probs=257.3
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
++++|++|.++|++++|+|++++|++++.+|.|.+|++.+++....+..|..++..+.|+|+++++++++.||.|++|++
T Consensus 1 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CchHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 46789999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
.+++.+..+..|...|.++.|++++.++++++.++.|++||+.+++....+..|...+.++.|+|++.++++++.++.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888999999999999999988888888899999999999999999999999999999999988998888899999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCccee
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
+||++..+.. ..+..|...+.++.|+|+++.+++++.++.|++||+...+.
T Consensus 161 i~d~~~~~~~---------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-- 211 (289)
T cd00200 161 LWDLRTGKCV---------------------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-- 211 (289)
T ss_pred EEEccccccc---------------------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce--
Confidence 9999764422 24557888999999999999999999999999999998775
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCC
Q 002490 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (916)
Q Consensus 241 ~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~ 311 (916)
+..+..|...+.++.|+|++.++++++.+|.|++||+.++.....+..+...+.+++|+|+++++++++.+
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 66666888899999999998899888889999999999999988888888899999999999998887744
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=268.80 Aligned_cols=279 Identities=19% Similarity=0.360 Sum_probs=248.1
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEEC-CCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~-~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
.+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++ ...+-...+++|.+.|..+.|.+++..++++|.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 47899999999999999999999999999999994 44566678889999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 83 HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 83 ~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
|++++.+++|.+.|..+.-+.-|. ++.+++.|+++++||+++..++.++. ..-+++++.|..++..+.+|+-|+.|++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceee
Confidence 999999999999999998655555 67789999999999999998888875 3567999999999999999999999999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc--e
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--W 239 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~--~ 239 (916)
||++... ..+.+.||...|+.+..+|+|.++.+-+.|.++++||++.... .
T Consensus 201 Wd~r~~d---------------------------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 201 WDLRKND---------------------------GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred eccccCc---------------------------ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 9998754 4568999999999999999999999999999999999875432 1
Q ss_pred eeeeeecCCC----CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeC
Q 002490 240 EVDTLRGHMN----NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (916)
Q Consensus 240 ~~~~~~~~~~----~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~ 310 (916)
.+..+.+|.. ....++|+|+++.+.+|+.|+.+++||......+..+.+|.+.|..++|+|...++.+++.
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 2455555533 3457899999999999999999999999999999999999999999999999998887663
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=259.76 Aligned_cols=272 Identities=18% Similarity=0.357 Sum_probs=238.9
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~--~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
++++-..+.|..+...|+++.||+++. -.|++||++++. ++.+|++|...|+++.|..+|++++|||+||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 455666788999999999999999964 679999998875 58899999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-eCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
+...+.+.+. |..+|.++..+|+..-|+++..+|.|++||+.+..+...+ .....+|.++...|+|.+++.+...|+.
T Consensus 113 R~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 113 RSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred cCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 9877776665 7899999999999999999999999999999988776655 3445789999999999999999999999
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
.+|++-+..... .......+..|.+-+..+.+||++++|++++.|.+++||+..+. ..
T Consensus 192 yvW~l~~~~~~s---------------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~k 249 (311)
T KOG0315|consen 192 YVWRLLNHQTAS---------------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FK 249 (311)
T ss_pred EEEEccCCCccc---------------------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-ee
Confidence 999997733222 12244568889999999999999999999999999999999987 22
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEE
Q 002490 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (916)
Q Consensus 240 ~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 298 (916)
....+.+|...+..++||.+|++|++++.|+.+++|++..++.+..+.+|.....+++.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 35678899999999999999999999999999999999999999999988887766664
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=258.92 Aligned_cols=283 Identities=22% Similarity=0.357 Sum_probs=254.3
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~ 81 (916)
++.|..|.++|.++.|+-+|+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 82 ~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
+|+.++.+.+|.+.|..+.|+.+...+++|+.|.++++||.++. ++++.+......|+++..+ +..|+.||.||++
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv 167 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV 167 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence 99999999999999999999999999999999999999999854 6788888778889998886 6789999999999
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
|.||++.++... .....+|++++|+++++..++++-|+++++.|-.+++.
T Consensus 168 RtydiR~G~l~s-----------------------------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl- 217 (307)
T KOG0316|consen 168 RTYDIRKGTLSS-----------------------------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL- 217 (307)
T ss_pred EEEEeecceeeh-----------------------------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH-
Confidence 999998865422 22457899999999999999999999999999999998
Q ss_pred eeeeeecCCCCeE--EEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc-EEEEEEecCCCeEEEEeCCCceEE
Q 002490 240 EVDTLRGHMNNVS--CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 240 ~~~~~~~~~~~v~--~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
+...++|.+.-. .++++.....+++|++||.+.+||+...+.+..+..+... +..++++|....+.++...+...|
T Consensus 218 -L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 218 -LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred -HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 788889877543 4567777789999999999999999999999999887776 889999999888887777776665
Q ss_pred E
Q 002490 317 K 317 (916)
Q Consensus 317 ~ 317 (916)
.
T Consensus 297 ~ 297 (307)
T KOG0316|consen 297 Y 297 (307)
T ss_pred e
Confidence 4
No 39
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=9.9e-32 Score=288.72 Aligned_cols=490 Identities=16% Similarity=0.197 Sum_probs=372.4
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-ce----EEEecccccCEEEEEEecCC--CEEEEEECCCeEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TL----IDRFDEHDGPVRGVHFHKSQ--PLFVSGGDDYKIK 76 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~-~~----~~~~~~h~~~V~~i~fsp~~--~~l~s~~~dg~I~ 76 (916)
.+.+|...|.-+. |-|.+++++..++.+.||+..++ +. +..++...+.|+++ +||.. +.++.|+.+|.++
T Consensus 109 ~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lq 185 (910)
T KOG1539|consen 109 TTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQ 185 (910)
T ss_pred EeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEE
Confidence 4456666666554 44788999999999999998774 11 11222222227776 56654 4589999999999
Q ss_pred EEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEEEEC
Q 002490 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (916)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~ 155 (916)
+||+++++.++++.++...|+++.=+|--..++.|..+|+|.++|++.++.+.+++...++|++++|..||+ .+++++.
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 999999999999999999999999999888999999999999999999999999995569999999999997 6777788
Q ss_pred CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECC-
Q 002490 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN- 234 (916)
Q Consensus 156 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~- 234 (916)
.|.+.+||++..+... .....|.++|..+.|.|..+.+++++.|+.+++|=..
T Consensus 266 ~G~m~~wDLe~kkl~~--------------------------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLIN--------------------------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred CceEEEEEcCCCeeee--------------------------eeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 8999999998855432 2445789999999999999999999999998887544
Q ss_pred -CCcceeeeeeecCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEECCCCceeEEeec-c-----------------CCcEE
Q 002490 235 -ETKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-E-----------------HDRFW 294 (916)
Q Consensus 235 -~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~-----------------~~~i~ 294 (916)
.+.+..++.-.||..+.+|+.|. .+|.++.+++.|++++.+++.....-+.+.. + -.+|.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 44333466677999999999998 6889999999999999988754221111110 0 01111
Q ss_pred EEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEE-eCCeEEEEEccCCce-eeeEEecCCCCCCCCcCCeEEE
Q 002490 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKD-TQVIPIRRPGSTSLNQSPRTLS 372 (916)
Q Consensus 295 ~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~-~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~ 372 (916)
.+++... ...- -.+.+... .+...+.|++.+... ..++...... .....+++++
T Consensus 400 ~fa~~~~----------RE~~------------W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~--~~~~~~~av~ 455 (910)
T KOG1539|consen 400 EFAFENA----------REKE------------WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK--KDDINATAVC 455 (910)
T ss_pred eeecccc----------hhhh------------hcceeEEecCcceEEEEeccCcccccEEecCcccc--ccCcceEEEE
Confidence 1111110 0000 01222222 678889999887433 1222211100 0133889999
Q ss_pred EcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCc-eEEEeeC
Q 002490 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSIL 451 (916)
Q Consensus 373 ~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~-~~~~i~~ 451 (916)
.++-|+..++.+ ..|.|.+|++..+-..........|.++++.++....++.+++++.+|.+.+||+.+. .+.++..
T Consensus 456 vs~CGNF~~IG~--S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 456 VSFCGNFVFIGY--SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred EeccCceEEEec--cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 999999876654 3589999999766443322124588999999999999999999999999999999964 5667777
Q ss_pred CCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc--CCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcce-EE
Q 002490 452 PIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLS-KHAIIIASKKLVHQ-CT 525 (916)
Q Consensus 452 ~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~--~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~~-~~ 525 (916)
...+..+.......+++. ++-.|+++|+.+.+.++++.+ ..++.+.|||||++|++++ +.+|++||..++.+ -.
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 778899998888666655 788999999999999999874 8899999999999999999 78999999988774 45
Q ss_pred EeeeeeEEEEEEecCCeEEEEcC
Q 002490 526 LHETIRVKSGAWDDNGVFIYTTL 548 (916)
Q Consensus 526 ~~~~~~i~s~~w~~~~~~l~~t~ 548 (916)
+.-....+++.++|+|.++.++.
T Consensus 614 ~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 614 LLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred EecCCcceeeEECCCCCEEEEEE
Confidence 55577789999999999999876
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=313.24 Aligned_cols=286 Identities=31% Similarity=0.511 Sum_probs=254.8
Q ss_pred cccc-CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC-
Q 002490 5 FETK-SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY- 80 (916)
Q Consensus 5 l~~h-~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~--~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~- 80 (916)
+.+| ...|+++.|||+|+++++++.++.+++|+..+++ ..+.+.+|...|++++|+|++.++++++.|++|+|||+
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 4444 7899999999999999999999999999997777 77888899999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
..+++++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|...|.+++|++++++|++++.|+.|+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCC--CeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
+||+.++... +...+.++.. .++++.|+|++.++++++.|+.+++||+.....
T Consensus 314 vwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 314 VWDLETGSKL-------------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEECCCCcee-------------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999987632 1113334443 599999999999999999999999999999887
Q ss_pred eeeeeeecCCCC---eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc-CCcEEEEEEecCCCeEEEEe---CC
Q 002490 239 WEVDTLRGHMNN---VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNLLAAGH---DS 311 (916)
Q Consensus 239 ~~~~~~~~~~~~---v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~la~g~---~~ 311 (916)
.....+|... +.+...++.+.++++|+.|+.|.+||+.++..++.+..| ...+..+.++|..+++++++ |.
T Consensus 369 --~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 369 --VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred --eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 7788888775 334455779999999999999999999999999999999 88899999999999999876 33
Q ss_pred CceEEE
Q 002490 312 GMIVFK 317 (916)
Q Consensus 312 ~~~v~~ 317 (916)
.+.+|+
T Consensus 447 ~~~~w~ 452 (456)
T KOG0266|consen 447 LIRLWK 452 (456)
T ss_pred eEEEec
Confidence 344443
No 41
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=269.19 Aligned_cols=628 Identities=16% Similarity=0.165 Sum_probs=392.2
Q ss_pred cccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEE--------ecCCCEEEEEECCCeEEE
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF--------HKSQPLFVSGGDDYKIKV 77 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~f--------sp~~~~l~s~~~dg~I~v 77 (916)
.-|+..|.|+.|+.+...+.++ .|..+.+|.-.+......+.-.+.-|....+ -.....|+.++.||.+.+
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred cccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 3577888999999888766665 5666666654433322222211111111111 112346888899999999
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
-+ +.++.-..+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+- .+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 88 45777788889999999999999999999999999999998 56766666666778999999999987665554 34
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
.+.+=.+.... -......|++-|.++.|+|..+++++|+.|-..++||.....
T Consensus 167 h~~IKpL~~n~---------------------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 167 HISIKPLAANS---------------------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred eEEEeeccccc---------------------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc
Confidence 45554443322 223677899999999999999999999999999999987665
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEE
Q 002490 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (916)
Q Consensus 238 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~ 317 (916)
+.+-..|..+|++++|.|+ ..++.++. .++|+= +...+.|..++||+||..+++|+..|.+++.
T Consensus 220 ---Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 220 ---LFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---cccCChhccceeeeeeccc-cceeeeee-eeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 6777789999999999999 66666665 345521 2234678999999999999999988877664
Q ss_pred ecCCcc------------------------------------eEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCC
Q 002490 318 LERERP------------------------------------AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (916)
Q Consensus 318 ~~~~~~------------------------------------~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 361 (916)
.--++. .++..-.+|+++...++++|.-.......++..+.
T Consensus 284 ~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidgre--- 360 (737)
T KOG1524|consen 284 YAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDGRE--- 360 (737)
T ss_pred eeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEeccc---
Confidence 322211 33444456666677777777655533322332221
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCcccccccc-CceeEEEEEeCCcEEEEE-cC-CCEEEE
Q 002490 362 TSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKK-GLGGSAIFIARNRFAVLD-KS-SNQVLV 438 (916)
Q Consensus 362 ~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~i~~~~fs~~~~~l~~~-~~-d~~I~i 438 (916)
.-..+.- ...+++++.. +.++.+|.+.+....... ..+.. .....-..+-.+..++.- .. ...+.+
T Consensus 361 -----~tr~lie-q~ek~fli~d---gsSi~lytyegR~~~np~--~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhl 429 (737)
T KOG1524|consen 361 -----DTRNLIE-QGEKYFLILD---GSSIWLYTYEGRLHLNPR--YPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHL 429 (737)
T ss_pred -----cchhHhh-hhhhheEEec---CcEEEEEEecCceecCCC--CCCcccccccceeeecccceEEeecCCCCeeEEe
Confidence 0000110 1122333332 257777776554332221 11110 001111111112233332 22 234566
Q ss_pred Ecc-CCce----EEEeeCCCceeEEEEeC----CceEEEE--ECCEEEEEEcCCCeEEEE-EE-cCCeeEEEEcCCCCEE
Q 002490 439 KNL-KNEV----VKKSILPIAADAIFYAG----TGNLLCR--AEDRVVIFDLQQRLVLGD-LQ-TPFVKYVVWSNDMESV 505 (916)
Q Consensus 439 wdl-~~~~----~~~i~~~~~v~~l~~s~----~g~~l~~--~d~~v~l~d~~~~~~~~~-~~-~~~v~~v~~s~d~~~l 505 (916)
+|. .+.. -+.++....|..++... +.+.++. .++.+++=.+.+--.-.+ ++ +.-|..++|+...+.|
T Consensus 430 Fd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL 509 (737)
T KOG1524|consen 430 FDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL 509 (737)
T ss_pred ccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee
Confidence 666 3211 11222222444444332 2334443 233444433322111111 11 2557788888888888
Q ss_pred EEEeCCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCCceEEEEEecceEEEEEEeCCEEEEEeC
Q 002490 506 ALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDR 585 (916)
Q Consensus 506 a~~~~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 585 (916)
+-..+..+.+|-.... .|...+.+.-.+...+. ..+.+...++.+.++.+.+...
T Consensus 510 cglqDt~fsVWy~pn~----------------------vyvDrdiLpkTlierdt---~efgKnpqIvsFvgNqvtirrs 564 (737)
T KOG1524|consen 510 CGLQDTCFSVWYYPNE----------------------VYVDRDILPKTLIERDT---TEFGKNPQIVSFVGNQVTIRRS 564 (737)
T ss_pred eeeccceEEEEEcCCc----------------------ceecccccchhheecch---hhccCCcceeeeeccEEEEEec
Confidence 7777888888865422 12222212111222222 2334556788888888888878
Q ss_pred CCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCchhhcccccCcchhhhhhhhcCCHHHHHH
Q 002490 586 DGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVA 665 (916)
Q Consensus 586 ~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~~~~~~f~lal~~g~~~~A~~ 665 (916)
+|.+.-+.+.+-. +.+. . ++..+.|+.|++
T Consensus 565 dG~LlpisV~py~-------------~iL~-------------e------------------------~~sssKWeqavR 594 (737)
T KOG1524|consen 565 DGALLPISVNPYP-------------EILH-------------E------------------------YLSSSKWEQAVR 594 (737)
T ss_pred cCceEeeeccccH-------------HHHH-------------H------------------------HhccchHHHHHH
Confidence 8888777776532 1111 1 122344999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHHHHhcCCHH
Q 002490 666 SAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVK 745 (916)
Q Consensus 666 ~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ 745 (916)
+|+...+..+|..||-.|....+..++|.+|..+.+.+|++++-.+..-..|..+|+.+.-..+....+..+.+.-|.++
T Consensus 595 LCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~ 674 (737)
T KOG1524|consen 595 LCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIE 674 (737)
T ss_pred HHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHH
Confidence 99999999999999999999999999999999999999999997777777777787665555555555555555555555
Q ss_pred HHHHHHHHcCCchHHHHHHHhcCC
Q 002490 746 ERVKILESAGHLPLAYITASVHGL 769 (916)
Q Consensus 746 ea~~~~~~~g~~~~A~~~a~~~g~ 769 (916)
+|+.+-.+.-.|..|++++.+|..
T Consensus 675 qav~lni~m~nW~RALEl~~K~K~ 698 (737)
T KOG1524|consen 675 QAVGLNIRMHNWRRALELSQKHKE 698 (737)
T ss_pred HhhhhhhhhhhHHHHHHHHHhHHH
Confidence 555555555555555555555554
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=274.82 Aligned_cols=301 Identities=25% Similarity=0.457 Sum_probs=261.3
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
++.+.+++|.+-|+|+++.|.+.+|+||+.|++|+|||+.+++...++.||...|+.+++|+-.+|+++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
+...+.++.+.||-+.|.|+..+|.-+.|++|+.|.++|+||+++... ...+.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---------------------------V~~l~ 274 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---------------------------VHVLS 274 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce---------------------------EEEec
Confidence 999999999999999999999999999999999999999999998543 35889
Q ss_pred ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 002490 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (916)
Q Consensus 202 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 281 (916)
||..+|..+.+.|..+.+++|+.|++|++||+..++. ..++..|...|.+++.+|....+++++.| .|+-|++..+.
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~ 351 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE 351 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc
Confidence 9999999999999999999999999999999999997 88888999999999999999999999987 59999999999
Q ss_pred eeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEe-cCCC
Q 002490 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI-RRPG 360 (916)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~-~~~~ 360 (916)
.++.+.+++.-+.+++...|+- +++|+|+ +.+.+||..++-..+.... ..+|
T Consensus 352 f~~nlsgh~~iintl~~nsD~v-~~~G~dn--------------------------g~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDGV-LVSGGDN--------------------------GSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred hhhccccccceeeeeeeccCce-EEEcCCc--------------------------eEEEEEecCcCcccccccccccCC
Confidence 9999999999999999887664 4555544 5577888888765554421 1223
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (916)
Q Consensus 361 ~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~ 401 (916)
+..-...|.+.+|...|..++.+. .|.+|++|.-+...+
T Consensus 405 Sl~sEagI~as~fDktg~rlit~e--adKtIk~~keDe~aT 443 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGSRLITGE--ADKTIKMYKEDEHAT 443 (460)
T ss_pred ccccccceeEEeecccCceEEecc--CCcceEEEecccccC
Confidence 221133788899999998876544 457999998765543
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-33 Score=302.41 Aligned_cols=235 Identities=25% Similarity=0.501 Sum_probs=216.7
Q ss_pred EecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe-------------------------------eEEEEecCCC
Q 002490 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-------------------------------CLFTLLGHLD 94 (916)
Q Consensus 46 ~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~-------------------------------~~~~l~~h~~ 94 (916)
++..-...++|..|++++.+||.|..|..|++|.+...+ ...++.||.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 333345568999999999999999999999999987321 2345779999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccC
Q 002490 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (916)
Q Consensus 95 ~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 174 (916)
+|..+.|+|+.++|+++|.|+++|+|.+.+..++..++||..+|..+.|+|.|-+++|+|.|++-++|.......
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P----- 527 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP----- 527 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877442
Q ss_pred CccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEE
Q 002490 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254 (916)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l 254 (916)
...+.+|...|.|+.|||+..++++|+.|.+|++||..++.. ++.+.||.++|+++
T Consensus 528 ----------------------lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 528 ----------------------LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTAL 583 (707)
T ss_pred ----------------------hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEE
Confidence 336778999999999999999999999999999999999997 88899999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 255 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
+|||+|++|++|++||.|.+||+.++..+..+.+|.+.+.++.|+.+|+.||+|+
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC
Confidence 9999999999999999999999999999999999999999999999999999887
No 44
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-30 Score=269.76 Aligned_cols=486 Identities=13% Similarity=0.140 Sum_probs=357.2
Q ss_pred cccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEeccc-ccCEEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL-IDRFDEH-DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~-~~~~~~h-~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~ 83 (916)
.-..+.|+++||+.+.+.||++-.+|.|-||+++.+=. ...+.++ +..|.+++|++.+ .|.+.+.+|.|.-||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccC
Confidence 34568999999999999999999999999999987633 3444544 5679999999555 6778888999999999999
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS--VLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
+....+....+.|++++.+|.+..++.+++||.+...+...+.... .+....+.|.++.|+|++..+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999999999999999999999988888887776554 34445689999999999999999999999999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceee
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (916)
||...+........ .+...-++...-|+++.|-.++ .|++|.+.|+|.+||...+.. +
T Consensus 181 wd~~~~~t~~~~~~-------------------~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL--i 238 (691)
T KOG2048|consen 181 WDVKSGQTLHIITM-------------------QLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL--I 238 (691)
T ss_pred EEcCCCceEEEeee-------------------cccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch--h
Confidence 99988665431100 0000111123346777777654 699999999999999999987 8
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce----eEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEE
Q 002490 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (916)
Q Consensus 242 ~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~ 317 (916)
.....|...|.+++..++++++++++.|+.|.-|...+.+. ......|...+.+++..++ .+.+|+.+..+.+.
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 88889999999999999999999999999999888766533 2223456677899998877 56666655554443
Q ss_pred ecCCc-------c-------eE-EecCCEEEEE-eCCeEEEEEccCC------ceeeeEEecCCCCCCCCcCCeEEEEcC
Q 002490 318 LERER-------P-------AF-AVSGDSLFYA-KDRFLRYYEFSTQ------KDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (916)
Q Consensus 318 ~~~~~-------~-------~~-s~~~~~l~~~-~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (916)
..++. + .. ....++|+.. ....+.+|.+.+. ....++.+.-..+ . .|.+-+.||
T Consensus 317 ~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~-~---nIs~~aiSP 392 (691)
T KOG2048|consen 317 SSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK-E---NISCAAISP 392 (691)
T ss_pred cccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc-c---ceeeeccCC
Confidence 33321 1 11 1222345444 6777888887765 2223333333332 2 899999999
Q ss_pred CCCEEEEEEcCCCCEEEEEEeeCCCCCCCcc--ccccccCceeEEEEEeCCcEEEEEc-CCCEEEEEccCCc---eEEEe
Q 002490 376 TENAVLICSDVDGGSYELYVIPKDSIGRGDS--VQDAKKGLGGSAIFIARNRFAVLDK-SSNQVLVKNLKNE---VVKKS 449 (916)
Q Consensus 376 ~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~--~~~~~~~~i~~~~fs~~~~~l~~~~-~d~~I~iwdl~~~---~~~~i 449 (916)
+|+.+++.+- ..++||.+.......... ......-....+.|+-++..++.++ ....+.+.++.+. .+..+
T Consensus 393 dg~~Ia~st~---~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 393 DGNLIAISTV---SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred CCCEEEEeec---cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence 9999998887 688999997765322110 1111222466788888876666665 5778888888752 33333
Q ss_pred eCCC---ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEE--cCCeeEEEEcC-CCCEEE-EEeCCeEEEEecCC
Q 002490 450 ILPI---AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQ--TPFVKYVVWSN-DMESVA-LLSKHAIIIASKKL 520 (916)
Q Consensus 450 ~~~~---~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~--~~~v~~v~~s~-d~~~la-~~~~~~i~i~~~~~ 520 (916)
.... .|..|+.|++|.++|. +.+.|.+|++.+++.-.... ...++.++++| +...|+ ..++++++-||.+.
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 3221 8999999999999987 78999999999887654442 36789999996 344444 44589999999865
Q ss_pred cce
Q 002490 521 VHQ 523 (916)
Q Consensus 521 ~~~ 523 (916)
.++
T Consensus 550 ~~l 552 (691)
T KOG2048|consen 550 RNL 552 (691)
T ss_pred hhh
Confidence 553
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=291.58 Aligned_cols=282 Identities=18% Similarity=0.293 Sum_probs=246.9
Q ss_pred CcccccccCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCC-CceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEE
Q 002490 1 MLTKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~-~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vW 78 (916)
|++.+.||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|+.++|+++|..|.|+|.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 4678999999999999999 889999999999999999876 89999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 79 NYKMHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 79 d~~~~~~~~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
|+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+++.++++.+.|+
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999986 45678999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
++++|+.+..-. .++....+.....++..+|++++++.-+.|+.|.++.....-
T Consensus 365 s~riWe~~~~v~--------------------------ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 365 SVRIWENRIPVP--------------------------IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred cEEEEEcCCCcc--------------------------chhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999877433 233444455567789999999999999999999999865432
Q ss_pred c-eeeeeeecCCC--CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCC-eEEEEe
Q 002490 238 A-WEVDTLRGHMN--NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LLAAGH 309 (916)
Q Consensus 238 ~-~~~~~~~~~~~--~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~-~la~g~ 309 (916)
. .....+.+|.. --..+.|||||.+|++|+.||.+.+||.++-+.+..++.|...+..+.|||... .+|+++
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 1 11334556643 456689999999999999999999999999999999999999999999999654 455544
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=285.22 Aligned_cols=286 Identities=23% Similarity=0.436 Sum_probs=242.2
Q ss_pred cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 50 h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
-+.+|..+.|.|+|+.|++|+..|.+.+|+..+...-..+..|..+|+++.|++++.+++||+.+|.|++|+..-. .+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3567999999999999999999999999998654444455789999999999999999999999999999997543 344
Q ss_pred EEeC-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCee
Q 002490 130 VLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (916)
Q Consensus 130 ~~~~-h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (916)
.+.. |...|.+++|+|+...++++|.||+|+|||....+.. .++.+|.-.|.
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee---------------------------~vL~GHgwdVk 226 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE---------------------------RVLRGHGWDVK 226 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh---------------------------heeccCCCCcc
Confidence 4444 4489999999999999999999999999998775432 26789999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 002490 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (916)
Q Consensus 209 ~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 288 (916)
++.|||...++++|+.|..|++||.+++.+ +.++.+|.+.|..+.|+|++++|+++|.|..++++|+++.+.++++++
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence 999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEecC-CCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcC
Q 002490 289 EHDRFWILASHPE-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (916)
Q Consensus 289 ~~~~i~~l~~sp~-~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (916)
|...+++++|||- ..+|++|+ .|+.+..|.+...+++..+. .+| ...
T Consensus 305 Hkkdv~~~~WhP~~~~lftsgg--------------------------~Dgsvvh~~v~~~~p~~~i~---~AH---d~~ 352 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNESLFTSGG--------------------------SDGSVVHWVVGLEEPLGEIP---PAH---DGE 352 (464)
T ss_pred chhhheeeccccccccceeecc--------------------------CCCceEEEeccccccccCCC---ccc---ccc
Confidence 9999999999994 45666665 45666777766444433322 233 449
Q ss_pred CeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 368 i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
|.+++|+|-|..+ ++++.|.++++|.-...
T Consensus 353 iwsl~~hPlGhil--~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 353 IWSLAYHPLGHIL--ATGSNDRTVRFWTRNRP 382 (464)
T ss_pred eeeeeccccceeE--eecCCCcceeeeccCCC
Confidence 9999999999844 44567889999986443
No 47
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=278.78 Aligned_cols=660 Identities=13% Similarity=0.133 Sum_probs=418.0
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
+++.|++|.+.|.|++|+.||+++|+|+.|..|.+|+.+- +-+-.+ .|...|.|+.|+|-...|+|++-+ ..-+|+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 4688999999999999999999999999999999998532 222233 599999999999999999998764 5778987
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE---eCCCCceEEEEEecCC-----CEEEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPKE-----DLVVS 152 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~~p~~-----~~l~s 152 (916)
........ .....|.+++|..||++++.|-.+|+|.|-+- +++....+ .+.+++|.+++|+|.. +.+++
T Consensus 122 ~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 122 EQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 75433221 13557888999999999999999999999974 44443333 3578899999999963 48889
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd 232 (916)
....+++.++.+++..... -..-.-...|+.+.|+|.+++.|+.|+.+++|.
T Consensus 199 ~DW~qTLSFy~LsG~~Igk----------------------------~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGK----------------------------DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred EeccceeEEEEecceeecc----------------------------cccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 9999999999987732211 111223456899999999999999999999997
Q ss_pred CCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE------------------ee-ccCCcE
Q 002490 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT------------------FR-REHDRF 293 (916)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------~~-~~~~~i 293 (916)
...-. +.++......|+.++.+|++++++.|+.||+|..|++...+.-.. +. +...+|
T Consensus 251 R~Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI 327 (1081)
T KOG1538|consen 251 RDGVR---LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI 327 (1081)
T ss_pred ecCeE---EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee
Confidence 65544 677777788999999999999999999999999998754321111 00 011111
Q ss_pred EEEE----EecCCCeEEEEeCCCceEEEecCCcc------------------eEEecCCEEEEEeCCeEEEEEccCCcee
Q 002490 294 WILA----SHPEMNLLAAGHDSGMIVFKLERERP------------------AFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (916)
Q Consensus 294 ~~l~----~sp~~~~la~g~~~~~~v~~~~~~~~------------------~~s~~~~~l~~~~d~~i~~~d~~~~~~~ 351 (916)
.+-. .+--.+.+|+--...+.+|++..++. .....+++++.+.++.+..+|+.+-+..
T Consensus 328 kC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~R 407 (1081)
T KOG1538|consen 328 KCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKER 407 (1081)
T ss_pred eHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhh
Confidence 1100 11134567777788888888877653 4456788899999999999998763221
Q ss_pred eeEEecCCCCCCCCcCCeEE--EEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEE
Q 002490 352 QVIPIRRPGSTSLNQSPRTL--SYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (916)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~l--~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~ 429 (916)
.. .... -|+-+ .=.|-|+--++.+-.+++.++||--+.-+. ........|.|+..+..-+.+++
T Consensus 408 eW-~M~S--------~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~Pi-----Ll~~~~tAvrClDINA~R~kLAv 473 (1081)
T KOG1538|consen 408 EW-QMES--------LIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPI-----LLLKQATAVRCLDINASRKKLAV 473 (1081)
T ss_pred hh-hHHH--------HHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchh-----heecccceeEEeeccCCcceEEE
Confidence 10 0000 11111 112444433334434777888875433332 34455667999999988888888
Q ss_pred EcCCCEEEEEccCCceEEEeeCCCceeEEEEeCC-ceEEEE-ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEE
Q 002490 430 DKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGT-GNLLCR-AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVAL 507 (916)
Q Consensus 430 ~~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~-g~~l~~-~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~ 507 (916)
....++..++|+.++.+ +-....+.+++|+.. ..+++. ..|.+.+--. .+ + +.| ..+.=+++
T Consensus 474 VDD~~~c~v~DI~t~el--L~QEpg~nSV~wNT~~E~MlcfT~~g~L~VR~~-------~~---P---~h~-qk~~G~Vv 537 (1081)
T KOG1538|consen 474 VDDNDTCLVYDIDTKEL--LFQEPGANSVAWNTQCEDMLCFTGGGYLNVRAS-------TF---P---VHR-QKLQGFVV 537 (1081)
T ss_pred EccCCeEEEEEccCCce--EeecCCCceEEeeccccceEEEecCCceEEEec-------cC---C---cch-hcceEEEE
Confidence 88889999999997654 222337899999987 555555 4554433210 00 0 111 11221222
Q ss_pred Ee-CCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCCceEEEEEecceEEEEEEeCCEEEEEeCC
Q 002490 508 LS-KHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRD 586 (916)
Q Consensus 508 ~~-~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 586 (916)
+- +.+++..... .++. .. .|.+.-+|. |+ -.|. .+. . ..+-|+
T Consensus 538 G~~gsk~FCL~~~-----~i~~-~e------vp~~~~m~q------~I-eag~--------f~e---a---~~iacl--- 581 (1081)
T KOG1538|consen 538 GYNGSKIFCLHVF-----SISA-VE------VPQSAPMYQ------YI-ERGL--------FKE---A---YQIACL--- 581 (1081)
T ss_pred EecCceEEEEEee-----eeec-cc------ccccccchh------hh-hccc--------hhh---h---hccccc---
Confidence 22 2222221100 0000 00 000000000 00 0110 000 0 000011
Q ss_pred CCeEEEEeChhHHHHHHHHhcccHHHHHhhh-ccCcccchhHHHHHH--------------------HCCCchhhccccc
Q 002490 587 GKNRAIVIDATEYIFKLSLLRKRYDHVMSMI-RNSQLCGQAMIAYLQ--------------------QKGFPEVALHFVK 645 (916)
Q Consensus 587 ~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~-~~~~~~~~~i~~~l~--------------------~~~~~e~al~~~~ 645 (916)
-+..+.=++.-..||..-+++.|.+.. |...+....++.-|+ .+.|.|+|.-|.+
T Consensus 582 ----gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 582 ----GVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----ceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 011112223334455555555443332 122222222333222 2233333332221
Q ss_pred C--cchhhhhhhhcCCHHHHHHHHHHcC---CHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcC-------
Q 002490 646 D--ERTRFNLALESGNIQIAVASAKEID---EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITG------- 713 (916)
Q Consensus 646 ~--~~~~f~lal~~g~~~~A~~~a~~~~---~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g------- 713 (916)
. .....+|.-.+.++|.|.+..+.-+ .+.+-++-|++|-...+...|.+++..+|+.+|+..+....|
T Consensus 658 ~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lid 737 (1081)
T KOG1538|consen 658 SGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLID 737 (1081)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHH
Confidence 1 1112233334444555555544433 255788889999999999999999999999999988866655
Q ss_pred --------CHHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhc
Q 002490 714 --------NMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVH 767 (916)
Q Consensus 714 --------~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~ 767 (916)
+.+.+.+++...........+++++..+||.++-+++.++.++|++|+.+|..|
T Consensus 738 I~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 738 IARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC
Confidence 455667777777888888899999999999999999999999999999999876
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.8e-32 Score=263.81 Aligned_cols=332 Identities=15% Similarity=0.240 Sum_probs=279.7
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
..+..|..|..+|.+++.+|+.++++|||.|..-.+|++.++.....+.+|.+.|+++.|+.+|.+||+|..+|.|+||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 44678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
..++.....+...-..+.-+.|||.+..|+.|+.||.+.+|.+.+.. ....+.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---------------------------~~kv~~ 187 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---------------------------LCKVMS 187 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---------------------------eeeEec
Confidence 99999988887667788889999999999999999999999998742 334788
Q ss_pred ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 202 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
||..++++=.|.|+|+.++++..||+|++|+..++.+ +..+.+ .....+++.++..+..++.|+.++.+++-+..++
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred CCCCCcccccccCCCceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 9999999999999999999999999999999999986 444442 2345678899999999999999999999998888
Q ss_pred ceeEEeec--------cCC---cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 002490 281 TGVQTFRR--------EHD---RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (916)
Q Consensus 281 ~~~~~~~~--------~~~---~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~ 349 (916)
+.+..... +.. .|-.+.++..-.+.|+|+ -+++|.+||+....
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~--------------------------vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS--------------------------VDGTIAIYDLAAST 319 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhccc--------------------------ccceEEEEecccch
Confidence 87776652 122 233344444555666665 67889999998876
Q ss_pred eeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEE
Q 002490 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (916)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~ 429 (916)
.......+ ..|..+.|-+ ..++++++ .+|.++.|+.... +++....+|...|.+++++|+.+++++
T Consensus 320 ~R~~c~he--------~~V~~l~w~~-t~~l~t~c--~~g~v~~wDaRtG---~l~~~y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 320 LRHICEHE--------DGVTKLKWLN-TDYLLTAC--ANGKVRQWDARTG---QLKFTYTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred hheeccCC--------CceEEEEEcC-cchheeec--cCceEEeeecccc---ceEEEEecCchheeEEEEcCCCcEEEE
Confidence 65554433 2899999999 45555544 3589999998654 444478899999999999999999999
Q ss_pred EcCCCEEEEEccC
Q 002490 430 DKSSNQVLVKNLK 442 (916)
Q Consensus 430 ~~~d~~I~iwdl~ 442 (916)
++.|++.+|++..
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 9999999999764
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=272.12 Aligned_cols=290 Identities=22% Similarity=0.411 Sum_probs=260.0
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
.+.+.+.+|..+|+.+-|+|+-.+++++++|++|++||+.++++...++||.+.+..+.|+..|+++++++.|-.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEE
Q 002490 122 WQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (916)
Q Consensus 122 ~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (916)
.++ .+++..+.+|.+.|.++.|-|.|+++++++.|.+|+.|++.++. +...+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---------------------------cv~t~ 231 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---------------------------CVKTF 231 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce---------------------------eEEec
Confidence 976 67788889999999999999999999999999999999998865 45678
Q ss_pred eccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC---------------CCEEEE
Q 002490 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK---------------QDIIVS 265 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~---------------~~~l~s 265 (916)
.+|...|..+..+.||.++++++.|.+|++|-..+.++ ...++.|..+|-|++|-|. ++++.+
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~--k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC--KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh--hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 88999999999999999999999999999999999987 7788999999999999772 359999
Q ss_pred EeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEc
Q 002490 266 NSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEF 345 (916)
Q Consensus 266 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~ 345 (916)
++.|++|++||+.++.++.++.+|...|..++|+|.|++|+++. .|+++++||+
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca--------------------------DDktlrvwdl 363 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA--------------------------DDKTLRVWDL 363 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe--------------------------cCCcEEEEEe
Confidence 99999999999999999999999999999999999999999887 4688999999
Q ss_pred cCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
++.++...... +.+ .++++.|..+-.+ +.+++-+..+++|.
T Consensus 364 ~~~~cmk~~~a--h~h-----fvt~lDfh~~~p~--VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 364 KNLQCMKTLEA--HEH-----FVTSLDFHKTAPY--VVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeccCC--Ccc-----eeEEEecCCCCce--EEeccccceeeeee
Confidence 99888766642 222 8899999888664 34444667888885
No 50
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=278.36 Aligned_cols=448 Identities=14% Similarity=0.246 Sum_probs=350.6
Q ss_pred EEEEEEeCCC--CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 12 VKGLSFHSKR--PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 12 V~~l~~sp~~--~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
|+++ +||.- +.++.|+..|.++||++++++.+.+++++...|+++.=+|-=..++.|..+|+|.++|++.++.+.++
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6666 57753 56889999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEe-CCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 90 LGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~ 167 (916)
+...+.|+.++|..||+ .+++++..|.+.+||++..+.+..+. .|.+.|..+.|.|....+++++.|..+++|=..++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 85569999999999987 66777777999999999988887775 78899999999999999999999999999876643
Q ss_pred cceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc-CCCCEEEEEECCCcEEEEECCCCccee-ee---
Q 002490 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWE-VD--- 242 (916)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~dg~v~iwd~~~~~~~~-~~--- 242 (916)
.-. ........||..+..++.|. .+|..+.+++.|++.+.+++....... +.
T Consensus 321 dg~-----------------------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~ 377 (910)
T KOG1539|consen 321 DGV-----------------------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLH 377 (910)
T ss_pred CCc-----------------------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccc
Confidence 211 12344667899999999998 688899999999999988764322100 00
Q ss_pred ------------eeecCCCCeEEEEEccC-----CCEEEEEeCCCcEEEEECCCCce-eEEee-----ccCCcEEEEEEe
Q 002490 243 ------------TLRGHMNNVSCVMFHAK-----QDIIVSNSEDKSIRVWDVTKRTG-VQTFR-----REHDRFWILASH 299 (916)
Q Consensus 243 ------------~~~~~~~~v~~l~~sp~-----~~~l~s~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s 299 (916)
+..-.-.+|..+++... .+.+++.-.+..++.|+.++.+. ...+. .....+.+++.+
T Consensus 378 ~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 378 NKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred cccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 00111234666665432 23455555667899999987654 22222 233568889999
Q ss_pred cCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCE
Q 002490 300 PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENA 379 (916)
Q Consensus 300 p~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~ 379 (916)
+.|++...|. ..|.|.+|++++|-....+. +.+.+ ..+++.++...-++.
T Consensus 458 ~CGNF~~IG~--------------------------S~G~Id~fNmQSGi~r~sf~-~~~ah---~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 458 FCGNFVFIGY--------------------------SKGTIDRFNMQSGIHRKSFG-DSPAH---KGEVTGLAVDGTNRL 507 (910)
T ss_pred ccCceEEEec--------------------------cCCeEEEEEcccCeeecccc-cCccc---cCceeEEEecCCCce
Confidence 9999988887 45778899999876554442 11223 339999999877665
Q ss_pred EEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC-ceEEEeeCCC-ceeE
Q 002490 380 VLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-EVVKKSILPI-AADA 457 (916)
Q Consensus 380 llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~-~~~~~i~~~~-~v~~ 457 (916)
+ ++++ .+|.+.+|++.+..... .-.-...+..+.++.....++.+..|-.|+++|..+ +.++.+.+|. .|++
T Consensus 508 ~-vsa~-~~Gilkfw~f~~k~l~~----~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 508 L-VSAG-ADGILKFWDFKKKVLKK----SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred E-EEcc-CcceEEEEecCCcceee----eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 4 4444 45899999997665321 112234477788888888888888899999999996 6677788776 9999
Q ss_pred EEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc-CCeeEEEEcCCCCEEEEEe--CCeEEEEecC
Q 002490 458 IFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDMESVALLS--KHAIIIASKK 519 (916)
Q Consensus 458 l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~-~~v~~v~~s~d~~~la~~~--~~~i~i~~~~ 519 (916)
+.|||||+.|++ -|++|++||+.++.++-.+.. .++.++.|||+|.+||.+. .+.|++|...
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999988 689999999999999998884 7899999999999999998 4689999754
No 51
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.6e-30 Score=262.48 Aligned_cols=445 Identities=17% Similarity=0.248 Sum_probs=313.6
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCC--------eEEEEECCCCceEEEecccccCEEEEEEec--CCCEEEEE--E
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSG--------VIQLWDYRMGTLIDRFDEHDGPVRGVHFHK--SQPLFVSG--G 70 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg--------~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp--~~~~l~s~--~ 70 (916)
+.+.+|+..|.|++.||+.-.+++|-..| .+++||..+-..+..+...+..|.|++|++ .|.++... +
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence 35679999999999999999999875544 599999888888888887888899999998 34455544 4
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE---eC-CCCceEEEEEecC
Q 002490 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TG-HNHYVMCASFHPK 146 (916)
Q Consensus 71 ~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~-h~~~v~~l~~~p~ 146 (916)
.+..+.|||.+.+............|....|+|..+.++.....+.+.+|+++.+...... .. ....|.|++|.++
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN 257 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC
Confidence 4667999999988888777777888999999998876666666789999999887665433 22 2367999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 226 (916)
|+ +++|..+|.|.||+..+.+. .+... .|+++|.+++...+|.+ ++|+.|+
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~--------------------------~k~~~-aH~ggv~~L~~lr~Gtl-lSGgKDR 308 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRI--------------------------SKQVH-AHDGGVFSLCMLRDGTL-LSGGKDR 308 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceE--------------------------EeEee-ecCCceEEEEEecCccE-eecCccc
Confidence 85 78999999999999866443 22334 89999999999999975 5599999
Q ss_pred cEEEEECCCCcceeeee---------------------------------------eecCCCCeEEEEEccCCCEEEEEe
Q 002490 227 QVKLWRMNETKAWEVDT---------------------------------------LRGHMNNVSCVMFHAKQDIIVSNS 267 (916)
Q Consensus 227 ~v~iwd~~~~~~~~~~~---------------------------------------~~~~~~~v~~l~~sp~~~~l~s~~ 267 (916)
.|..||-.-.+. .-.. ..+|......++.+|+.+.+++++
T Consensus 309 ki~~Wd~~y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 309 KIILWDDNYRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred eEEecccccccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 999998432221 1111 234444555566666666666666
Q ss_pred CCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccC
Q 002490 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST 347 (916)
Q Consensus 268 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~ 347 (916)
.|+.+++|+ ..++..+.. ..++..++.|+|.| .+|+|+ ..+...+.|.++
T Consensus 388 qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt--------------------------~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGT--------------------------ATGRWFVLDTET 437 (626)
T ss_pred CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEee--------------------------ccceEEEEeccc
Confidence 666666665 223333222 23445566666666 555555 456666778777
Q ss_pred CceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEE
Q 002490 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFA 427 (916)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l 427 (916)
...+.+ +... . +++.++|+|+|.++++.+ .|+.+.||.++........ ....+..+|+.+.||+|++|+
T Consensus 438 ~~lv~~---~~d~--~---~ls~v~ysp~G~~lAvgs--~d~~iyiy~Vs~~g~~y~r-~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 438 QDLVTI---HTDN--E---QLSVVRYSPDGAFLAVGS--HDNHIYIYRVSANGRKYSR-VGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred ceeEEE---EecC--C---ceEEEEEcCCCCEEEEec--CCCeEEEEEECCCCcEEEE-eeeecCceeEEeeecCCCceE
Confidence 443333 2222 2 999999999999988876 4579999999876543322 222233779999999999999
Q ss_pred EEEcCCCEEEEEccCC-c---eEEEeeC---------------CC-ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEE
Q 002490 428 VLDKSSNQVLVKNLKN-E---VVKKSIL---------------PI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVL 485 (916)
Q Consensus 428 ~~~~~d~~I~iwdl~~-~---~~~~i~~---------------~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~ 485 (916)
.+.+.|-.|..|.... . .++.++- +. .+..++-+....++++ ..|+|++|..+--+..
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 9999999999993322 1 1111110 00 3445555666777777 4679999986544443
Q ss_pred EEEE-----cCCeeEEEEcCCCCEEEEEe-CCeEEEEec
Q 002490 486 GDLQ-----TPFVKYVVWSNDMESVALLS-KHAIIIASK 518 (916)
Q Consensus 486 ~~~~-----~~~v~~v~~s~d~~~la~~~-~~~i~i~~~ 518 (916)
+.+. .+.|++|+|..+.+++.+.+ +.+|..|+.
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 3332 37799999998777776666 668888864
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=269.49 Aligned_cols=279 Identities=25% Similarity=0.379 Sum_probs=244.6
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEec--------ccccCEEEEEEecCCCEEEEEECCCeEEEE
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD--------EHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~--------~h~~~V~~i~fsp~~~~l~s~~~dg~I~vW 78 (916)
+..+.+.|..|||||++|++|+.||.|.+||+.+|++.+.++ -|+.+|.|+.||.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445678999999999999999999999999999998765443 478999999999999999999999999999
Q ss_pred ECCCCeeEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 79 NYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 79 d~~~~~~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
.+.+|.|++.+. .|...|+|+.|+.|+..+++++.|.+++|.-+.+|+++..+++|.+.|+.+.|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999986 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-CEEEEEECCCcEEEEECCCC
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~iwd~~~~ 236 (916)
+|++|+..+.+..... ...+.+.+|+++-.-|.. ..++++...++|+|.++...
T Consensus 371 tvkvW~~KtteC~~Tf-------------------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTF-------------------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred cEEEecCcchhhhhhc-------------------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 9999999886654322 223456678888877754 47888888999999998765
Q ss_pred cceeeeeee---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCc
Q 002490 237 KAWEVDTLR---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 237 ~~~~~~~~~---~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
- +.++. ...+...+.+.+|.|.++.+.++|+.++.|...+|+.-.++..|...+..++-||..+++|+-+.+|+
T Consensus 426 v---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 426 V---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred E---EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence 4 34332 23455667789999999999999999999999999999999999999999999999999998775544
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=254.05 Aligned_cols=285 Identities=26% Similarity=0.436 Sum_probs=238.4
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC-CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~-~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~ 122 (916)
+..+.+|++.|..+.|+|+|.+|+|||.|..|.+|++. ..+....+++|++.|..+.|.+|++.+++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34567899999999999999999999999999999954 55667788999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 123 QSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 123 ~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
++|++++.+++|...|.++.-+.-|. ++.+++.|+++++||+++.......
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---------------------------- 171 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---------------------------- 171 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc----------------------------
Confidence 99999999999999999988444444 7778899999999999975543221
Q ss_pred ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-
Q 002490 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR- 280 (916)
Q Consensus 202 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~- 280 (916)
.....++++.|..++..+.+|+-|+.|++||++.... ..++.||..+|+.+..+|+|.++.+.+.|.++++||++..
T Consensus 172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 2345788999999999999999999999999999887 8999999999999999999999999999999999998753
Q ss_pred ---ceeEEeeccCC----cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeee
Q 002490 281 ---TGVQTFRREHD----RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (916)
Q Consensus 281 ---~~~~~~~~~~~----~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~ 353 (916)
.++..+.++.. .....+|+|+++.+.+|+ .|+.+++||..+...+..
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags--------------------------~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS--------------------------ADRFVYVWDTTSRRILYK 303 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCcccccc--------------------------ccceEEEeecccccEEEE
Confidence 33555555433 345688999999998887 568889999877554333
Q ss_pred EEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEE
Q 002490 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (916)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i 393 (916)
+ +|+ .+.|.++.|+|....++.++. |.++.+
T Consensus 304 l----pGh---~gsvn~~~Fhp~e~iils~~s--dk~i~l 334 (338)
T KOG0265|consen 304 L----PGH---YGSVNEVDFHPTEPIILSCSS--DKTIYL 334 (338)
T ss_pred c----CCc---ceeEEEeeecCCCcEEEEecc--CceeEe
Confidence 3 455 449999999999987766553 346554
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=272.02 Aligned_cols=271 Identities=28% Similarity=0.536 Sum_probs=230.9
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
+..|.|+.+. ...+++|..|.+|.|||..+..+...+.+|.+.|.|+.| +.+.+++|+.|.+|+|||+++++++.+
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 4678999885 456899999999999999999999999999999999999 455999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE---EEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
+.+|...|..+.|+.. +++++|.|.+|.+||+.+... ...+.||...|..+.|+ .++++++|.|.+|++|++.
T Consensus 273 lihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred HhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence 9999999999999854 799999999999999986543 34667999999999996 5699999999999999998
Q ss_pred CCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeee
Q 002490 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (916)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 245 (916)
+.+. ...+.+|.++|.|+.+. ++++++|++|.+|++||+..+.+ +..+.
T Consensus 349 t~ef---------------------------vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~c--LRvLe 397 (499)
T KOG0281|consen 349 TCEF---------------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC--LRVLE 397 (499)
T ss_pred ceee---------------------------ehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHH--HHHHh
Confidence 8653 34788999999988874 68999999999999999999998 88899
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------eeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEE
Q 002490 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT---------GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 246 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
||..-|.|+.| +.+.|++|+.||+|++||+..+. ++.++..|.++|..+.|. +-+++++.+++.+.+|
T Consensus 398 GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiW 474 (499)
T KOG0281|consen 398 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIW 474 (499)
T ss_pred chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEE
Confidence 99999999999 46789999999999999998654 334455677889888884 2344455556555555
Q ss_pred EecCC
Q 002490 317 KLERE 321 (916)
Q Consensus 317 ~~~~~ 321 (916)
++...
T Consensus 475 dFl~~ 479 (499)
T KOG0281|consen 475 DFLNG 479 (499)
T ss_pred EcCCC
Confidence 54443
No 55
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-29 Score=267.40 Aligned_cols=516 Identities=15% Similarity=0.198 Sum_probs=361.4
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEE--CCCeEEEEECCCCeeEEEEec
Q 002490 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG--DDYKIKVWNYKMHRCLFTLLG 91 (916)
Q Consensus 14 ~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~--~dg~I~vWd~~~~~~~~~l~~ 91 (916)
+++-.|-..++|- -...+|.+||.+..+.-+.+..|..++++++|+++|+++++|- ....++||++.....+..+..
T Consensus 42 gLa~~p~Sgl~aY-pAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvd 120 (1080)
T KOG1408|consen 42 GLASVPCSGLCAY-PAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVD 120 (1080)
T ss_pred cccccccccceee-ccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhh
Confidence 3444554433332 2456899999998888888888999999999999999999984 677899999999889999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC--CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q 002490 92 HLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (916)
Q Consensus 92 h~~~v~~v~fs~~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~ 169 (916)
|...|+|++|+|.++++++.+. |-.|.+|||+.......-+ -...|..++|+.+|.++++.+ +..|++|.+...++
T Consensus 121 HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~K 198 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSK 198 (1080)
T ss_pred ccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeee-eeeEEEEEeecccc
Confidence 9999999999999999998776 5578899987544333222 356789999999999999988 67899999987763
Q ss_pred eecc-CCc-cceeecccccccc-------c-cccceEEEEEecc-----------------CCCeeEEEEcCCCCEEEEE
Q 002490 170 KTVS-PAD-DILRLSQMNTDLF-------G-GVDAVVKYVLEGH-----------------DRGVNWAAFHPTLPLIVSG 222 (916)
Q Consensus 170 ~~~~-~~~-~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~-----------------~~~v~~~~~~p~~~~l~~~ 222 (916)
.... |.. ...-+.......| + ..+........|| ....+|++.+ .++|++|
T Consensus 199 ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cg 276 (1080)
T KOG1408|consen 199 YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACG 276 (1080)
T ss_pred ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEe
Confidence 2211 100 0000000000000 0 0001111111122 2233455555 4689999
Q ss_pred ECCCcEEEEECCCCcceeeeeee------------------------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 223 ADDRQVKLWRMNETKAWEVDTLR------------------------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~------------------------~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
+.+|.|++|+..+-.. ..+++ +..-....+.|+|..+.|.+...|.+++|||++
T Consensus 277 Ca~g~vrlFnp~tL~y--~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 277 CAKGMVRLFNPETLDY--AGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred eccceeeecCcchhhh--ccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecc
Confidence 9999999998765432 11110 011123467899999999999999999999998
Q ss_pred CCcee---EEeeccCCcEEEEEEec------------CCCeEEEEeCCCceEEEecCCcc--------------------
Q 002490 279 KRTGV---QTFRREHDRFWILASHP------------EMNLLAAGHDSGMIVFKLERERP-------------------- 323 (916)
Q Consensus 279 ~~~~~---~~~~~~~~~i~~l~~sp------------~~~~la~g~~~~~~v~~~~~~~~-------------------- 323 (916)
.-..+ ..+-.|...||.+..-| .+.++.+.+|+.+.+|++.....
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d 434 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYED 434 (1080)
T ss_pred ccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcccc
Confidence 65433 33445777788766544 45566677789999998876211
Q ss_pred -------------------------------eEEecCCEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEE
Q 002490 324 -------------------------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (916)
Q Consensus 324 -------------------------------~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (916)
+.++++.+|+.+ ..|.+++|++..-+....+.. | ...|.++
T Consensus 435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA----H---esEilcL 507 (1080)
T KOG1408|consen 435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA----H---ESEILCL 507 (1080)
T ss_pred CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec----c---cceeEEE
Confidence 567888999999 899999999988665444432 2 3399999
Q ss_pred EEcC-C-CCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCC--cEEEEEcCCCEEEEEccCC-ceE
Q 002490 372 SYSP-T-ENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARN--RFAVLDKSSNQVLVKNLKN-EVV 446 (916)
Q Consensus 372 ~~sp-~-~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~--~~l~~~~~d~~I~iwdl~~-~~~ 446 (916)
.||- + ++.|+ ++.+.|.-|.+|++..+-. +...+.+|...|+++.|...| +.+++++.|+.|.+.-.+. ...
T Consensus 508 eyS~p~~~~kLL-ASasrdRlIHV~Dv~rny~--l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g 584 (1080)
T KOG1408|consen 508 EYSFPVLTNKLL-ASASRDRLIHVYDVKRNYD--LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG 584 (1080)
T ss_pred eecCchhhhHhh-hhccCCceEEEEecccccc--hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc
Confidence 9984 2 23333 4444778999999876543 223688999999999999887 7778888898887766551 111
Q ss_pred EEee------CCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc-----CCeeEEEEcCCCCEEEEEe-CCe
Q 002490 447 KKSI------LPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLS-KHA 512 (916)
Q Consensus 447 ~~i~------~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~-----~~v~~v~~s~d~~~la~~~-~~~ 512 (916)
..+. .+..+.+|...|+.+++++ .|..|+||++++++....+++ +....|...|.|.|||... +.+
T Consensus 585 ~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 585 RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence 1111 1227899999999888876 799999999999999999985 5567799999999999765 889
Q ss_pred EEEEecCCcce-EEEee-eeeEEEEEEecCCeEEEE
Q 002490 513 IIIASKKLVHQ-CTLHE-TIRVKSGAWDDNGVFIYT 546 (916)
Q Consensus 513 i~i~~~~~~~~-~~~~~-~~~i~s~~w~~~~~~l~~ 546 (916)
+.++|...+.. ..+.. ..-|+.+.|.+|..-|.+
T Consensus 665 l~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 665 LCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred eEEEEeccchhhhhhcCcchheeeeeecccchhhee
Confidence 99999987763 33322 445566666655444443
No 56
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.4e-29 Score=265.18 Aligned_cols=486 Identities=19% Similarity=0.317 Sum_probs=341.3
Q ss_pred cccccccCCCEEEEEEeCCCC---EEEEEecCCeEEEEECCCC--ceEEEecccccCEEEEEEecCCCEEEEEECCCeEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~---~la~~~~dg~I~lwd~~~~--~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~ 76 (916)
++.+.||.++|+|+.|-|+.+ .+++|+.||.|.+|.++.. ..+..+++|...+.|+ +.......+...|+.+.
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVS 124 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEE
Confidence 467899999999999999887 8999999999999999844 3455666766655544 33222222235677788
Q ss_pred EEECCCCe--------------------------------------------------eEEEEecCCCCEEEEEEcCCCC
Q 002490 77 VWNYKMHR--------------------------------------------------CLFTLLGHLDYIRTVQFHHEYP 106 (916)
Q Consensus 77 vWd~~~~~--------------------------------------------------~~~~l~~h~~~v~~v~fs~~~~ 106 (916)
+||.+..+ .+..+.||.+.|++++|...+.
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 88763222 2335678999999999987544
Q ss_pred ---EEEEEECCCcEEEEeCCCCe---------------------EEE----------EEeCCCCceEEEEEecCCCEEEE
Q 002490 107 ---WIVSASDDQTIRIWNWQSRT---------------------CIS----------VLTGHNHYVMCASFHPKEDLVVS 152 (916)
Q Consensus 107 ---~l~s~s~dg~I~iwd~~~~~---------------------~~~----------~~~~h~~~v~~l~~~p~~~~l~s 152 (916)
+|+++|.|..||||.+.-+. ... .+.||...|+++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 89999999999999764211 111 12389999999999999999999
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE-EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iw 231 (916)
+|.|.++.+|......-.-. ..++. ...+...+.....|+|+++.+++-+..|..++|
T Consensus 285 ASaDksmiiW~pd~~tGiWv---------------------~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWV---------------------DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cccCcceEEEecCCccceEE---------------------EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 99999999998765321110 00111 222445678899999999999999999999999
Q ss_pred ECCCCcce-eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEecCCCeEE
Q 002490 232 RMNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDRFWILASHPEMNLLA 306 (916)
Q Consensus 232 d~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~~~~la 306 (916)
.......| ......||...|..+.|+|.|.+|++.|.|.+-|+|-.-.. ..+..-+.|...+.++++-+....++
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 95554443 24456799999999999999999999999999999865411 12233345666788888887555566
Q ss_pred EEeCCCce-EEEecCCc---------------------------------------------------------------
Q 002490 307 AGHDSGMI-VFKLERER--------------------------------------------------------------- 322 (916)
Q Consensus 307 ~g~~~~~~-v~~~~~~~--------------------------------------------------------------- 322 (916)
+|.+..+. +|+.+..-
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 66655543 44322100
Q ss_pred c---------------------------eEEecCCEEEEE------eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCe
Q 002490 323 P---------------------------AFAVSGDSLFYA------KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (916)
Q Consensus 323 ~---------------------------~~s~~~~~l~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (916)
| +.++.++.++++ +...|++|+..+-.....+ . +| ...|+
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L--~--~H---sLTVT 576 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL--E--GH---SLTVT 576 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee--c--cc---ceEEE
Confidence 0 334457777776 4557899998875544432 2 22 33899
Q ss_pred EEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCc-cccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCc---e
Q 002490 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE---V 445 (916)
Q Consensus 370 ~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~---~ 445 (916)
.++|||||++|+.++. |.++.+|........... .....|..-|..+.|+|+++++++++.|++|.||..... .
T Consensus 577 ~l~FSpdg~~LLsvsR--DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSR--DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCcEEEEeec--CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 9999999999888774 579999998655443221 125678888999999999999999999999999999853 2
Q ss_pred EEE---eeCCCceeEEEEeCC-----ceEEEE--ECCEEEEEEcCCCe---EEE--EE----E-----cCCeeEEEEcCC
Q 002490 446 VKK---SILPIAADAIFYAGT-----GNLLCR--AEDRVVIFDLQQRL---VLG--DL----Q-----TPFVKYVVWSND 501 (916)
Q Consensus 446 ~~~---i~~~~~v~~l~~s~~-----g~~l~~--~d~~v~l~d~~~~~---~~~--~~----~-----~~~v~~v~~s~d 501 (916)
+.. ++....|+.+++.|- +-+++. ..|.|.+|....-. .+. .+ . ...|+.+.|+|.
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 222 333448888888774 224444 78999999864111 011 11 1 156889999964
Q ss_pred --------CC--EEEEEe-CCeEEEEecC
Q 002490 502 --------ME--SVALLS-KHAIIIASKK 519 (916)
Q Consensus 502 --------~~--~la~~~-~~~i~i~~~~ 519 (916)
.. .+++++ ++.+++++.+
T Consensus 735 ~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 735 CSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccccceeEEeeecccceeEEeecc
Confidence 33 346666 6788888754
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.7e-30 Score=308.67 Aligned_cols=277 Identities=16% Similarity=0.283 Sum_probs=232.9
Q ss_pred ccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----c----eEEEecccccCEEEEEEec-CCCEEEEEECCCeE
Q 002490 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----T----LIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKI 75 (916)
Q Consensus 5 l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~----~----~~~~~~~h~~~V~~i~fsp-~~~~l~s~~~dg~I 75 (916)
+..|.+.|.+++|+|++++||+|+.|+.|+||+..+. . ....+. +...|.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 456899999987 47899999999999
Q ss_pred EEEECCCCeeEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEe-cCCCEEEEE
Q 002490 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH-PKEDLVVSA 153 (916)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~v~~v~fs~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~-p~~~~l~s~ 153 (916)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++++.|++|++||+.++.++..+..+ ..|.++.|+ +++.+|++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999999998888754 679999995 468899999
Q ss_pred ECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEEC
Q 002490 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (916)
Q Consensus 154 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~ 233 (916)
+.|++|++||++..+. ....+.+|...|.++.|. ++.+|++++.|++|++||+
T Consensus 637 s~dg~I~iwD~~~~~~--------------------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 637 SADHKVYYYDLRNPKL--------------------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred eCCCeEEEEECCCCCc--------------------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999999976432 112556899999999997 6789999999999999999
Q ss_pred CCCc----ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee-------------ccCCcEEEE
Q 002490 234 NETK----AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------REHDRFWIL 296 (916)
Q Consensus 234 ~~~~----~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~i~~l 296 (916)
.... ...+..+.+|...+.+++|+|++.+|++|+.|+.|++|+.....++..+. .+...|.++
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v 769 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence 7531 12367888999999999999999999999999999999987655443321 233458999
Q ss_pred EEecCCCeEEEEeC
Q 002490 297 ASHPEMNLLAAGHD 310 (916)
Q Consensus 297 ~~sp~~~~la~g~~ 310 (916)
+|+|++..+++|+.
T Consensus 770 ~ws~~~~~lva~~~ 783 (793)
T PLN00181 770 CWRGQSSTLVAANS 783 (793)
T ss_pred EEcCCCCeEEEecC
Confidence 99999999888874
No 58
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=290.14 Aligned_cols=294 Identities=26% Similarity=0.426 Sum_probs=251.0
Q ss_pred EEecc-cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe--eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 45 DRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 45 ~~~~~-h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~--~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
..+.. |...|.++.|+++|.++++++.|+.+++|+..+.+ ....+.+|...|..++|+|++.++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34434 37889999999999999999999999999998777 7778889999999999999999999999999999999
Q ss_pred C-CCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEE
Q 002490 122 W-QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (916)
Q Consensus 122 ~-~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (916)
+ ..+.++.++.+|...|++++|+|+++++++|+.|++|++||+++++ +...+
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---------------------------~~~~l 284 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---------------------------CVRKL 284 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe---------------------------EEEee
Confidence 9 5668999999999999999999999999999999999999998844 45588
Q ss_pred eccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCC--eEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
.+|..+|++++|++++++|++++.|+.|++||+.++....+..+.++... ++++.|+|++.++++++.|+.+++||+.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 99999999999999999999999999999999999883114555665555 9999999999999999999999999999
Q ss_pred CCceeEEeeccCCc---EEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 279 KRTGVQTFRREHDR---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 279 ~~~~~~~~~~~~~~---i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
.+..+..+..+... +.....++.+.++.+|+ .++.|.+|++.++..+..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~--------------------------~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS--------------------------EDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEe--------------------------CCceEEEEeCCccchhhhhc
Confidence 99999998888764 33334456666776666 67889999999866655543
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEee
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~ 397 (916)
... .. .+..++++|..+.++..+...|+.+++|..+
T Consensus 419 ~h~---~~---~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 GHS---KA---AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCC---CC---ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 321 23 8889999999998877765567899999764
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-31 Score=263.33 Aligned_cols=277 Identities=16% Similarity=0.266 Sum_probs=237.1
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~---~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
+.|+.|++.|.-+.||++|++||+++.|.+..+|.+... ++.+++.+|..+|..+.||||.++|++++.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 467899999999999999999999999999999997544 45788899999999999999999999999999999999
Q ss_pred CCCCeeEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCC-CceEEEEEecCCCEEEEEECCC
Q 002490 80 YKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-HYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 80 ~~~~~~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~s~s~dg 157 (916)
+.+|.+...+. +|...+.+++|.|||..+++|+.|++|..||+. |..+....+-. ..|.+++.++||+++++.+.|.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 99999887764 346789999999999999999999999999985 44455554433 5689999999999999999999
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
.+++++........ +-....+|++.+.|.+++++++.-.+..+++||+...+
T Consensus 377 ~i~l~~~e~~~dr~----------------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 377 KIRLYNREARVDRG----------------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ceeeechhhhhhhc----------------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 99999987643221 22345789999999999999999999999999999777
Q ss_pred ceeeeeeecCCCC--eEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCC-CeEEEEeC
Q 002490 238 AWEVDTLRGHMNN--VSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM-NLLAAGHD 310 (916)
Q Consensus 238 ~~~~~~~~~~~~~--v~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~-~~la~g~~ 310 (916)
. +....||... +-.-+|.- +..++++||+|+.|+||+..+++++..+.+|...+.+++|+|.. .++|+++|
T Consensus 429 l--v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 429 L--VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred H--HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 6 7777787654 33345543 55899999999999999999999999999999999999999955 46777774
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-29 Score=270.42 Aligned_cols=288 Identities=31% Similarity=0.545 Sum_probs=249.2
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~ 123 (916)
+.++++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+++++++++++.++.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35677899999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEecc
Q 002490 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (916)
Q Consensus 124 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (916)
+++.+..+..|...+.++.|+|+++++++++.++.|++||+.+.+. ...+..|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~ 134 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---------------------------LTTLRGH 134 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE---------------------------EEEeccC
Confidence 9888888999999999999999988888888899999999985432 2345578
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q 002490 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (916)
Q Consensus 204 ~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 283 (916)
...+.+++|+|++.++++++.++.|++||++..+. +..+..|...+.++.|+|+++.+++++.++.|++||+.+++.+
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 88999999999988888888899999999997776 6677788889999999999999999999999999999998888
Q ss_pred EEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCC
Q 002490 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (916)
Q Consensus 284 ~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 363 (916)
..+..+...+.+++++|++.++++++ .++.+++|++.+++....+. .+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~~~i~i~~~~~~~~~~~~~----~~-- 260 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGS--------------------------EDGTIRVWDLRTGECVQTLS----GH-- 260 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEc--------------------------CCCcEEEEEcCCceeEEEcc----cc--
Confidence 88877888999999999988887776 24667888887765544433 22
Q ss_pred CCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 364 ~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
...+.+++|+|+++.+++++ .++.+++|+
T Consensus 261 -~~~i~~~~~~~~~~~l~~~~--~d~~i~iw~ 289 (289)
T cd00200 261 -TNSVTSLAWSPDGKRLASGS--ADGTIRIWD 289 (289)
T ss_pred -CCcEEEEEECCCCCEEEEec--CCCeEEecC
Confidence 22899999999988765544 568999984
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.1e-30 Score=238.47 Aligned_cols=287 Identities=17% Similarity=0.297 Sum_probs=242.2
Q ss_pred eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002490 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (916)
Q Consensus 43 ~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~ 122 (916)
..+.++.|+++|+.+.|+-+|+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec
Q 002490 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (916)
Q Consensus 123 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (916)
.+|+.++.+.+|...|..++|+.+...+++|+.|.++++||.++....+ .+.+..
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------------iQilde 143 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------------IQILDE 143 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-------------------------cchhhh
Confidence 9999999999999999999999999999999999999999998855432 234555
Q ss_pred cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 002490 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 282 (916)
...+|.++.... ..|++|+.||+++.||++.+.. .... ...+|+|++|+++++..+.++.|+++++.|-.+|+.
T Consensus 144 a~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l--~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 144 AKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTL--SSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hcCceeEEEecc--cEEEeeccCCcEEEEEeeccee--ehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 667788877764 5799999999999999999875 3222 346899999999999999999999999999999999
Q ss_pred eEEeeccCCcEEEE--EEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCC
Q 002490 283 VQTFRREHDRFWIL--ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (916)
Q Consensus 283 ~~~~~~~~~~i~~l--~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 360 (916)
++.+++|...-..+ +++.....+++|+ .|+.+.+||+.....+..++...
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgS--------------------------EDG~Vy~wdLvd~~~~sk~~~~~-- 269 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGS--------------------------EDGKVYFWDLVDETQISKLSVVS-- 269 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEecc--------------------------CCceEEEEEeccceeeeeeccCC--
Confidence 99999988754443 3344445566666 67889999998876655544322
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 361 ~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
. ..+.++++.|.-..++++++ +....|.
T Consensus 270 ~----v~v~dl~~hp~~~~f~~A~~---~~~~~~~ 297 (307)
T KOG0316|consen 270 T----VIVTDLSCHPTMDDFITATG---HGDLFWY 297 (307)
T ss_pred c----eeEEeeecccCccceeEecC---Cceecee
Confidence 1 14789999999888888876 5555554
No 62
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=2.5e-28 Score=248.15 Aligned_cols=429 Identities=14% Similarity=0.207 Sum_probs=314.9
Q ss_pred cccCCCEEEEEEeC--CCCEEEEE--ecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 6 ETKSNRVKGLSFHS--KRPWILAS--LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 6 ~~h~~~V~~l~~sp--~~~~la~~--~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~ 81 (916)
..-...|+|++||+ .|.+|+.- +.+..+.+||+..+......+.....|....|+|..+.++.....+.+.+|+.+
T Consensus 151 g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 151 GFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred ccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 34567899999998 34555544 335678999999998888887788889999999988877766677899999998
Q ss_pred CCeeEEE---Eec-CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 82 MHRCLFT---LLG-HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 82 ~~~~~~~---l~~-h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
.+....+ +.. ....|.|++|.++|. +++|..+|.|.||+..+.+..+....|++.|.+++...+|. |++|+.|+
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDR 308 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDR 308 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccc
Confidence 8765543 222 236899999999996 88999999999999988887777779999999999998885 55599999
Q ss_pred eEEEEECCCCcceeccCC--------------ccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE
Q 002490 158 TVRVWDIGALRKKTVSPA--------------DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 223 (916)
.|..||- ..++...... +..+.-...+..++|...........+|....+.++.+|+.+.+++++
T Consensus 309 ki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 309 KIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred eEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 9999993 3222221111 112222344556666666667778889999999999999999999999
Q ss_pred CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCC
Q 002490 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN 303 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 303 (916)
.|+.+++|+ ..+. .-.+....++.|+.|+|.| .++.|+..|...+.|..+...+. ++..+.++..++++|+|.
T Consensus 388 qdk~v~lW~--~~k~---~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKL---EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGA 460 (626)
T ss_pred CcceEEEcc--CCce---eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCC
Confidence 999999999 3332 2222345678999999999 99999999999999999855554 444589999999999999
Q ss_pred eEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEE
Q 002490 304 LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLIC 383 (916)
Q Consensus 304 ~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~ 383 (916)
++|+|+ .|+.|++|.+..+.......-+..+ . +|+.+.||+|++++...
T Consensus 461 ~lAvgs--------------------------~d~~iyiy~Vs~~g~~y~r~~k~~g--s---~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 461 FLAVGS--------------------------HDNHIYIYRVSANGRKYSRVGKCSG--S---PITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEEec--------------------------CCCeEEEEEECCCCcEEEEeeeecC--c---eeEEeeecCCCceEEec
Confidence 999998 4566777776654332222222223 2 99999999999987655
Q ss_pred EcCCCCEEEEEEeeCCCCCCCcc-----------------ccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC---
Q 002490 384 SDVDGGSYELYVIPKDSIGRGDS-----------------VQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN--- 443 (916)
Q Consensus 384 ~~~~~g~i~i~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~--- 443 (916)
++ |-.+-.| .+.. ..+... ....+...+..++-+...++++++...|+|+++...-
T Consensus 510 S~--d~eiLyW-~~~~-~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~ 585 (626)
T KOG2106|consen 510 SG--DYEILYW-KPSE-CKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP 585 (626)
T ss_pred cC--ceEEEEE-cccc-CcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCC
Confidence 53 3467677 3322 111110 0011222233344455568999999899999998872
Q ss_pred -ceEEEeeCCC-ceeEEEEeCCceEEEE--ECCEEEEEEc
Q 002490 444 -EVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDL 479 (916)
Q Consensus 444 -~~~~~i~~~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~ 479 (916)
.....+..|. .|++++|......+++ .|.+|..|++
T Consensus 586 rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 586 RAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 2334455555 8999999998777777 6889999986
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.9e-30 Score=255.17 Aligned_cols=278 Identities=25% Similarity=0.455 Sum_probs=234.0
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC---EEEEEECCCeEEEEECCCC
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~---~l~s~~~dg~I~vWd~~~~ 83 (916)
.|.+.|.++... ++++++|+.||.+++|| ..|+.+..+.+|.++|.+++|....+ .|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477788888777 78999999999999999 67999999999999999999964433 5999999999999998866
Q ss_pred eeE----EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC-------------------------CeEEEEEeCC
Q 002490 84 RCL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-------------------------RTCISVLTGH 134 (916)
Q Consensus 84 ~~~----~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-------------------------~~~~~~~~~h 134 (916)
... ..-.||...|.++...++|..+++||.|.+|.||+..+ +.++.++.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 33359999999999999999999999999999999321 3466788899
Q ss_pred CCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcC
Q 002490 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (916)
Q Consensus 135 ~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 214 (916)
..+|.++.|++ ...+++++.|.+|+.||+.++...... .-...++++.++|
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~----------------------------~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL----------------------------TTNKSLNCISYSP 310 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeee----------------------------ecCcceeEeeccc
Confidence 99999999997 679999999999999999887654321 1246789999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCcc-eeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCc-eeEEeeccCC
Q 002490 215 TLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRT-GVQTFRREHD 291 (916)
Q Consensus 215 ~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~ 291 (916)
..++|++|+.|+.+++||.+++.- ....++.+|.+.|.++.|+|.. ..|++++.|+++++||+++.. ++..+.+|.+
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 999999999999999999987653 2457789999999999999955 567899999999999999887 8999999999
Q ss_pred cEEEEEEecCCCeEEEEe-CCCceEEE
Q 002490 292 RFWILASHPEMNLLAAGH-DSGMIVFK 317 (916)
Q Consensus 292 ~i~~l~~sp~~~~la~g~-~~~~~v~~ 317 (916)
.|.++.|...+ ++++|+ |+.+.+++
T Consensus 391 Kvl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 391 KVLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred eEEEEeccCCc-eEEeccCcceEEEec
Confidence 99999998544 555544 55555443
No 64
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.5e-27 Score=251.74 Aligned_cols=453 Identities=16% Similarity=0.199 Sum_probs=323.5
Q ss_pred ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe-eEEEEecCC-CCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 002490 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-CLFTLLGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~-~~~~l~~h~-~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~ 126 (916)
-...+|++++|+.+.+.||.+-.+|.|-+|++..+= +...+.++. ..|.+++|++. ..|++.+.+|.|.-||+.+++
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCc
Confidence 356789999999999999999999999999998653 334555554 47999999954 468999999999999999999
Q ss_pred EEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC
Q 002490 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (916)
Q Consensus 127 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (916)
.+..+....+.|.+++.+|.++.+++|+.||.+..+++...... .+..+....+.
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-------------------------~~r~l~rq~sR 156 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-------------------------YKRSLMRQKSR 156 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE-------------------------EEeecccccce
Confidence 99999999999999999999999999999997777777654432 22344445689
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeee-----eec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT-----LRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 207 v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~-~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
+.+++|+|++..+++|+.||.|++||...+....+.+ +.. ...-|+++.|-.+ ..|++|...|+|.+||...+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc
Confidence 9999999999999999999999999999887633111 111 2334778887755 47999999999999999999
Q ss_pred ceeEEeeccCCcEEEEEEecCCCeEE-EEeCCCceEEEecCCcc----------------eEEecCCEEEEE-eCCeEEE
Q 002490 281 TGVQTFRREHDRFWILASHPEMNLLA-AGHDSGMIVFKLERERP----------------AFAVSGDSLFYA-KDRFLRY 342 (916)
Q Consensus 281 ~~~~~~~~~~~~i~~l~~sp~~~~la-~g~~~~~~v~~~~~~~~----------------~~s~~~~~l~~~-~d~~i~~ 342 (916)
+.++.+..|...|.+++..++++.+. +|-|..++.|...+... .+...++.++.+ .|..+.+
T Consensus 236 TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 236 TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAI 315 (691)
T ss_pred chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEE
Confidence 99999999999999999999977666 45577777777766533 223333334443 4554444
Q ss_pred EEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCC------CCccccccccCcee
Q 002490 343 YEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIG------RGDSVQDAKKGLGG 416 (916)
Q Consensus 343 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~------~~~~~~~~~~~~i~ 416 (916)
-....-+...-. ..... . .-.-+...|..+.++.... ..+.+|.+...... .+..........|.
T Consensus 316 ~~s~~~~~~~h~--~~~~~-p---~~~~v~~a~~~~L~~~w~~---h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs 386 (691)
T KOG2048|consen 316 CSSREFKNMDHR--QKNLF-P---ASDRVSVAPENRLLVLWKA---HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENIS 386 (691)
T ss_pred ccccccCchhhh--ccccc-c---ccceeecCccceEEEEecc---ccccceeccCcccccccChhhheeeecCCcccee
Confidence 333221000000 00000 0 1112444555554444433 57788887655221 11112233445689
Q ss_pred EEEEEeCCcEEEEEcCCCEEEEEccCC-ceEEEeeCCC------ceeEEEEeCCceEEEE---ECCEEEEEEcCCCe--E
Q 002490 417 SAIFIARNRFAVLDKSSNQVLVKNLKN-EVVKKSILPI------AADAIFYAGTGNLLCR---AEDRVVIFDLQQRL--V 484 (916)
Q Consensus 417 ~~~fs~~~~~l~~~~~d~~I~iwdl~~-~~~~~i~~~~------~v~~l~~s~~g~~l~~---~d~~v~l~d~~~~~--~ 484 (916)
+.+.||+|..++.+. -..++||.++- ..++...... ....+.|+-|+..++. ....+.++++.+.. .
T Consensus 387 ~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 387 CAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred eeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 999999999999998 68889998883 2333333222 6788889988665544 56677888776544 3
Q ss_pred EEEEE----cCCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcceEEEee--eeeEEEEEEe
Q 002490 485 LGDLQ----TPFVKYVVWSNDMESVALLS-KHAIIIASKKLVHQCTLHE--TIRVKSGAWD 538 (916)
Q Consensus 485 ~~~~~----~~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~~~~~~~--~~~i~s~~w~ 538 (916)
+..+. .+.|..++.|+||+|+|+.+ .+.|++|+.++.+...+.. +..++.+++.
T Consensus 466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~ 526 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFS 526 (691)
T ss_pred hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeecc
Confidence 33322 26799999999999999988 8899999999888665542 4556666665
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.5e-31 Score=244.30 Aligned_cols=288 Identities=18% Similarity=0.326 Sum_probs=254.5
Q ss_pred cccccCCCEEEEEEeC---CCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 4 KFETKSNRVKGLSFHS---KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp---~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
...||+.+|..++||| +|-+|++++.||.=.+-+-.+|.-+.+|.+|.+.|.+...+.+..+-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4679999999999987 7889999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
-+|..+.++. |..-|.+++|+.|.++|++|+.+..+||+|++.. .+...+.+|.+.|..+.|....+.+++++.|++|
T Consensus 89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 9999999986 8999999999999999999999999999999754 3566788999999999999999999999999999
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
|+||.+++...+. + ....+|+++.++++|++|.++ ..+.|.+||..+-..
T Consensus 168 RLWD~rTgt~v~s---------------------------L-~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~- 217 (334)
T KOG0278|consen 168 RLWDHRTGTEVQS---------------------------L-EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL- 217 (334)
T ss_pred EEEEeccCcEEEE---------------------------E-ecCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-
Confidence 9999999765432 1 135789999999999876665 478899999998775
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEe-eccCCcEEEEEEecCCCeEEEEeCCCceEEEe
Q 002490 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (916)
Q Consensus 240 ~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~ 318 (916)
+.. ......|.+..++|+...+++|++|..++.||..++..+..+ ++|.++|.++.|+|+|...|+|+
T Consensus 218 -lKs-~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--------- 286 (334)
T KOG0278|consen 218 -LKS-YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS--------- 286 (334)
T ss_pred -eee-ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC---------
Confidence 333 234467999999999999999999999999999999999886 89999999999999999999999
Q ss_pred cCCcceEEecCCEEEEEeCCeEEEEEccCCce
Q 002490 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (916)
Q Consensus 319 ~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~ 350 (916)
.|++|++|....++.
T Consensus 287 -----------------EDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 287 -----------------EDGTIRLWQTTPGKT 301 (334)
T ss_pred -----------------CCceEEEEEecCCCc
Confidence 567788887765543
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-29 Score=235.35 Aligned_cols=280 Identities=14% Similarity=0.255 Sum_probs=241.0
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~ 83 (916)
.|+||..+++.+.|+.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+|++.+.+.+.++||+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEeCC-------CCeEEEEEeCCCCceEEEEEecCCCEEE
Q 002490 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDLVV 151 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d-----g~I~iwd~~-------~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 151 (916)
+++.++. -..+|..+.|+++|++++.++++ +.|.++|++ +.++...+..+.+.++.+.|.|-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999987 57789999999999988877654 579999987 4567888888899999999999999999
Q ss_pred EEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEE
Q 002490 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (916)
Q Consensus 152 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iw 231 (916)
+|..||.|..||+++++.. ....+.|...|+.+.++|+..++++++.|.+-++|
T Consensus 164 ~Ghe~G~is~~da~~g~~~--------------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKEL--------------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred EecCCCcEEEEEcccCcee--------------------------eechhhhccccccccccCCcceEEecccCccceee
Confidence 9999999999999986542 23455688999999999999999999999999999
Q ss_pred ECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcE--------------EEEECCCCceeEEeeccCCcEEEEE
Q 002490 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI--------------RVWDVTKRTGVQTFRREHDRFWILA 297 (916)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i--------------~vwd~~~~~~~~~~~~~~~~i~~l~ 297 (916)
|+.+-.. +.+.. ...+|.+.+++|....++.|+..... ++|++-..+.+..+++|-++|.+++
T Consensus 218 D~~tl~v--~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 218 DVRTLEV--LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eccceee--EEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 9998875 44433 45789999999988888877643222 2222222234566788999999999
Q ss_pred EecCCCeEEEEeCCCc
Q 002490 298 SHPEMNLLAAGHDSGM 313 (916)
Q Consensus 298 ~sp~~~~la~g~~~~~ 313 (916)
+||+|+..++|..+|.
T Consensus 295 fhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDGY 310 (327)
T ss_pred ECCCCcccccCCCCce
Confidence 9999999999985544
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=258.33 Aligned_cols=279 Identities=24% Similarity=0.454 Sum_probs=234.2
Q ss_pred cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 50 h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
....|.|+.+ |...+++|..|++|+|||.++..++..+.||++.|.|+.|.. +.+++||.|.+|++||+++|+++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 4567999998 455799999999999999999999999999999999999864 589999999999999999999999
Q ss_pred EEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeE
Q 002490 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (916)
Q Consensus 130 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 209 (916)
++-+|...|..+.|+ ..+++++|.|.++.+||+...... .+..++.||...|+.
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i------------------------t~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI------------------------TLRRVLVGHRAAVNV 325 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH------------------------HHHHHHhhhhhheee
Confidence 999999999999997 459999999999999999874422 134478899999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 002490 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 210 ~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 289 (916)
+.|+. +++++++.|++|++|++.+... +.++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|
T Consensus 326 Vdfd~--kyIVsASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 326 VDFDD--KYIVSASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred ecccc--ceEEEecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 99976 5999999999999999999998 9999999999999887 6899999999999999999999999999999
Q ss_pred CCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceee-------eEEecCCCCC
Q 002490 290 HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ-------VIPIRRPGST 362 (916)
Q Consensus 290 ~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~-------~~~~~~~~~~ 362 (916)
..-|.++.| +.+.+++|. .||+|++||+..+.... +..+.. +
T Consensus 400 EeLvRciRF--d~krIVSGa--------------------------YDGkikvWdl~aaldpra~~~~~Cl~~lv~--h- 448 (499)
T KOG0281|consen 400 EELVRCIRF--DNKRIVSGA--------------------------YDGKIKVWDLQAALDPRAPASTLCLRTLVE--H- 448 (499)
T ss_pred HHhhhheee--cCceeeecc--------------------------ccceEEEEecccccCCcccccchHHHhhhh--c-
Confidence 999999998 556677665 67889999998764431 111111 1
Q ss_pred CCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC
Q 002490 363 SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (916)
Q Consensus 363 ~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~ 401 (916)
.+.+..+.|.. .. ++++. .+.+|-||++...+.
T Consensus 449 --sgRVFrLQFD~--fq-Ivsss-HddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 449 --SGRVFRLQFDE--FQ-IISSS-HDDTILIWDFLNGPP 481 (499)
T ss_pred --cceeEEEeecc--eE-EEecc-CCCeEEEEEcCCCCc
Confidence 23777777754 24 34444 345999999876654
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=8.5e-28 Score=253.59 Aligned_cols=493 Identities=16% Similarity=0.248 Sum_probs=338.3
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC---EEEEEECCCeEEEEECCC--CeeEEEEe
Q 002490 16 SFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKM--HRCLFTLL 90 (916)
Q Consensus 16 ~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~---~l~s~~~dg~I~vWd~~~--~~~~~~l~ 90 (916)
+|.|.+ .+|.| ....|.+||..+......+++|.++|+|+.|-|+.. ++++|+.|+.|++|.++. -.++.++.
T Consensus 21 sw~~~~-~vafG-a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~ 98 (764)
T KOG1063|consen 21 SWGPGG-LVAFG-AGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ 98 (764)
T ss_pred cccccc-eEEec-CCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec
Confidence 454544 34444 678899999887778889999999999999999887 899999999999999983 34566677
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------------------------------------
Q 002490 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--------------------------------------------- 125 (916)
Q Consensus 91 ~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~--------------------------------------------- 125 (916)
+|...+. +++.......+.+.|+++.+||.+..
T Consensus 99 g~~~~~~--cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 99 GHCKECV--CVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred CcceeEE--EEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 6655444 44433333333367888888887431
Q ss_pred -----eEEEEEeCCCCceEEEEEecCCC---EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccc-c---
Q 002490 126 -----TCISVLTGHNHYVMCASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV-D--- 193 (916)
Q Consensus 126 -----~~~~~~~~h~~~v~~l~~~p~~~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 193 (916)
+.+..+.||...|.+++|...+. +|+++|.|..||+|.+.-.................. ...+-.. .
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQY 255 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEE
Confidence 23456678999999999976544 899999999999999854331111111111110000 1111100 0
Q ss_pred -ceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc-e----eeeeeecCCCCeEEEEEccCCCEEEEEe
Q 002490 194 -AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W----EVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (916)
Q Consensus 194 -~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~-~----~~~~~~~~~~~v~~l~~sp~~~~l~s~~ 267 (916)
......+.||+..|.++.|+|.+..|++++.|.++.+|...+..- | .+....+.........|+|+++.+++-+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence 011124569999999999999999999999999999998776532 2 1222334455688999999999999999
Q ss_pred CCCcEEEEECCCC---ceeEEeeccCCcEEEEEEecCCCeEEE-EeCCCceEEEec--------CCcc--------eEE-
Q 002490 268 EDKSIRVWDVTKR---TGVQTFRREHDRFWILASHPEMNLLAA-GHDSGMIVFKLE--------RERP--------AFA- 326 (916)
Q Consensus 268 ~dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~~la~-g~~~~~~v~~~~--------~~~~--------~~s- 326 (916)
..|..++|..... .....+.+|.+.|..++|+|.|.++.+ +.|...++|.-- -.|| +.+
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 9999999983321 234446788899999999999997764 557666766443 1222 222
Q ss_pred ecCCEEEE-E-eCCeEEEEEccCC----------------------ceeeeEEe--------------------------
Q 002490 327 VSGDSLFY-A-KDRFLRYYEFSTQ----------------------KDTQVIPI-------------------------- 356 (916)
Q Consensus 327 ~~~~~l~~-~-~d~~i~~~d~~~~----------------------~~~~~~~~-------------------------- 356 (916)
..++.-++ + .++.+|+|+.... ..++.+-+
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 22243333 3 7788888875311 00000000
Q ss_pred -----cC-------------------CCCCCCCcCCeEEEEcCCCCEEEEEEcC---CCCEEEEEEeeCCCCCCCccccc
Q 002490 357 -----RR-------------------PGSTSLNQSPRTLSYSPTENAVLICSDV---DGGSYELYVIPKDSIGRGDSVQD 409 (916)
Q Consensus 357 -----~~-------------------~~~~~~~~~i~~l~~sp~~~~llv~~~~---~~g~i~i~~~~~~~~~~~~~~~~ 409 (916)
.. .|| ...|.+++.||+++.++.++.+ +...|.+|+...-.... .+.
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGH---GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~ 569 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGH---GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELE 569 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccC---ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eec
Confidence 00 111 3378999999999988777654 33468888875433222 477
Q ss_pred cccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceE-----EEeeCCC-ceeEEEEeCCceEEEE--ECCEEEEEEcCC
Q 002490 410 AKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV-----KKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQ 481 (916)
Q Consensus 410 ~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~-----~~i~~~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~~~ 481 (916)
.|.-.|+.++||||++||++.+.|+++.+|+...... ..++.|. -|.+..|+|++.++++ .|++|.+|..+.
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 9999999999999999999999999999999874322 2244555 6788899999998887 799999999988
Q ss_pred C--eEEEEEE----cCCeeEEEEcC----CCC-EEEEEe-CCeEEEEecC
Q 002490 482 R--LVLGDLQ----TPFVKYVVWSN----DME-SVALLS-KHAIIIASKK 519 (916)
Q Consensus 482 ~--~~~~~~~----~~~v~~v~~s~----d~~-~la~~~-~~~i~i~~~~ 519 (916)
. +.+..+. ...|+.++|-| +.. .++++- .+.|++|..+
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 7 5444432 36788888876 222 455555 7799999855
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=264.61 Aligned_cols=291 Identities=20% Similarity=0.366 Sum_probs=244.9
Q ss_pred ceEEEecccccCEEEEEEec-CCCEEEEEECCCeEEEEECCC-CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 002490 42 TLIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp-~~~~l~s~~~dg~I~vWd~~~-~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~i 119 (916)
+.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++-. ++|++++.+|..+|+.++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56778899999999999999 899999999999999999876 9999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 120 WNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 120 wd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
||.++|+++..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+++++..+
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq--------------------------- 336 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ--------------------------- 336 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---------------------------
Confidence 9999999999987 45678999999998 799999999999999999977544
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 199 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
....|-+.|..+.|-++|+++++.++|+.++||+...+-... .....+.....|+..+|++.+++.-+.|+.|.++.+.
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 344588999999999999999999999999999988776421 1122233346689999999999999999999999865
Q ss_pred CCce---eEEeeccC--CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeee
Q 002490 279 KRTG---VQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (916)
Q Consensus 279 ~~~~---~~~~~~~~--~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~ 353 (916)
..-. ...+.+|. +--..+.|||||.+|++|. .+|.+.+||..+.+....
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd--------------------------sdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD--------------------------SDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCCCeEEeec--------------------------CCccEEEeechhhhhhhc
Confidence 4322 22344443 3456789999999999998 567789999998776655
Q ss_pred EEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
+... ..++..+.|.|.....+++++ -+|.|++|+
T Consensus 470 lkah-------~~~ci~v~wHP~e~Skvat~~-w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAH-------DQPCIGVDWHPVEPSKVATCG-WDGLIKIWD 503 (503)
T ss_pred cccC-------CcceEEEEecCCCcceeEecc-cCceeEecC
Confidence 5322 238999999999988887777 678999995
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.2e-29 Score=233.75 Aligned_cols=278 Identities=16% Similarity=0.268 Sum_probs=242.9
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE--ecccccCEEEEEEecC-CCEEEEEECCCeEEEEE
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~--~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~vWd 79 (916)
+.+++|...|.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+|. .++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 46789999999999999999999999999999999987765543 4689999999999885 46899999999999999
Q ss_pred CCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 80 ~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
..++++........+. ..+.|+|+|.+++.++.|..|.+.|.++.+.....+ ....+.-++|+-++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 9999999988754444 457899999999999999999999999887766554 34567888999778877777778999
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
.|.....++.. ..+..|.....|+.|+|+|++|++|+.|-.+.+||+..--+
T Consensus 172 ~ILsypsLkpv---------------------------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC- 223 (313)
T KOG1407|consen 172 EILSYPSLKPV---------------------------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC- 223 (313)
T ss_pred EEEeccccccc---------------------------cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-
Confidence 99988765543 36778999999999999999999999999999999988776
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCC
Q 002490 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 240 ~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
++.+..+.-+|..+.|+.+|++||++|+|..|-|=++.+|..+..++ ..++...++|||...+||.+.++.
T Consensus 224 -~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 224 -ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 78888899999999999999999999999999999999999999887 567788999999999999776543
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=251.54 Aligned_cols=290 Identities=16% Similarity=0.299 Sum_probs=239.9
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC---eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~---~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iw 120 (916)
.+.+..|...|.-+.||++|++|||++.|.+..+|.+... +..+++.+|..+|..+.||||.+++++|+.+..+++|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 4566789999999999999999999999999999987643 4578899999999999999999999999999999999
Q ss_pred eCCCCeEEEEEe-CCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEE
Q 002490 121 NWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (916)
Q Consensus 121 d~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (916)
|..+|.+...+. +|...+.+++|.|||..+++|+.|+++..||+.+.....
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~---------------------------- 348 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN---------------------------- 348 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----------------------------
Confidence 999999887774 456789999999999999999999999999998754321
Q ss_pred Eec-cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 200 LEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 200 ~~~-~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
.++ ....|.+++..+||+++++.+.|..|++++..+... .. +.....+|++++.|.+++++++.-.+..+++||+.
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 111 225689999999999999999999999999887653 22 33345789999999999999999999999999999
Q ss_pred CCceeEEeeccCCcEEEE--EEec-CCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 279 KRTGVQTFRREHDRFWIL--ASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 279 ~~~~~~~~~~~~~~i~~l--~~sp-~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
....++.+.+|......+ +|.- +..++++|+ .|++|++|+..+++.+..+
T Consensus 426 e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS--------------------------ED~kvyIWhr~sgkll~~L- 478 (519)
T KOG0293|consen 426 ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS--------------------------EDSKVYIWHRISGKLLAVL- 478 (519)
T ss_pred hhhHHHHhhcccccceEEEeccCCCCcceEEecC--------------------------CCceEEEEEccCCceeEee-
Confidence 888888888776542222 2222 334566665 7789999999999887766
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeC
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~ 398 (916)
.||.. .+.+++|+|....++++++ |||+|+||....
T Consensus 479 ---sGHs~---~vNcVswNP~~p~m~ASas-DDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 ---SGHSK---TVNCVSWNPADPEMFASAS-DDGTIRIWGPSD 514 (519)
T ss_pred ---cCCcc---eeeEEecCCCCHHHhhccC-CCCeEEEecCCc
Confidence 35544 9999999999888766554 899999998754
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.1e-28 Score=292.63 Aligned_cols=305 Identities=15% Similarity=0.271 Sum_probs=239.2
Q ss_pred CCeEEEEECCCCceEEEe-----cccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC----e----eEEEEecCCCCE
Q 002490 30 SGVIQLWDYRMGTLIDRF-----DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----R----CLFTLLGHLDYI 96 (916)
Q Consensus 30 dg~I~lwd~~~~~~~~~~-----~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~----~----~~~~l~~h~~~v 96 (916)
+|.+++|+..+.+....+ ..|.+.|++++|+|++++|++|+.|+.|+||+..+. . ....+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 577888988766554443 358999999999999999999999999999997531 1 223333 45679
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec-CCCEEEEEECCCeEEEEECCCCcceeccC
Q 002490 97 RTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (916)
Q Consensus 97 ~~v~fs~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 174 (916)
.+++|++. +.+|++++.||+|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+++....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~---- 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI---- 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE----
Confidence 99999874 67999999999999999999999999999999999999997 6789999999999999999864322
Q ss_pred CccceeeccccccccccccceEEEEEeccCCCeeEEEEc-CCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEE
Q 002490 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253 (916)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~ 253 (916)
..+.. ...+.++.|+ +++.+|++|+.||.|++||+++.+. .+..+.+|...|++
T Consensus 612 -----------------------~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~ 666 (793)
T PLN00181 612 -----------------------GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSY 666 (793)
T ss_pred -----------------------EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEE
Confidence 12333 3578899995 5789999999999999999987652 25667899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCC------ceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEe
Q 002490 254 VMFHAKQDIIVSNSEDKSIRVWDVTKR------TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (916)
Q Consensus 254 l~~sp~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~ 327 (916)
+.|. ++.+|++++.|++|++||+..+ .++..+.+|...+..++++|++.++++|+.
T Consensus 667 v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~----------------- 728 (793)
T PLN00181 667 VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE----------------- 728 (793)
T ss_pred EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-----------------
Confidence 9997 7889999999999999999743 567788888889999999999999999983
Q ss_pred cCCEEEEEeCCeEEEEEccCCceeeeEEec---------CCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIR---------RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 328 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
|+.+.+|+...........+. ...+ ...|.+++|+|++..+++++ .+|.|++|++
T Consensus 729 ---------D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~V~~v~ws~~~~~lva~~--~dG~I~i~~~ 792 (793)
T PLN00181 729 ---------TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA---SQFISSVCWRGQSSTLVAAN--STGNIKILEM 792 (793)
T ss_pred ---------CCEEEEEECCCCCceEEEecccCCcccccccCCC---CcEEEEEEEcCCCCeEEEec--CCCcEEEEec
Confidence 344445544332211111110 0111 22789999999998765544 5689999985
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.6e-29 Score=232.06 Aligned_cols=287 Identities=20% Similarity=0.325 Sum_probs=243.5
Q ss_pred EEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE--EecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEe
Q 002490 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWN 121 (916)
Q Consensus 45 ~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~--l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd 121 (916)
+.+++|.++|.+++|+.+|..|++|+.|++++||+++..+.... ..+|.+.|-.++|+|..+ .+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999997765544 468999999999998654 899999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
.++++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.....
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------------------------- 144 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------------------------- 144 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh----------------------------
Confidence 99999998887555554 4889999999999999999999999886544321
Q ss_pred ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 002490 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (916)
Q Consensus 202 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 281 (916)
.....++-++|+.++.+++.....|+|.|.....-++ +.++..|..+..|+.|+|+|+++|+|+.|..+.+||+...-
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred cccceeeeeeecCCCCEEEEecCCceEEEEecccccc--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 2334567788998888888878789999999987776 99999999999999999999999999999999999999999
Q ss_pred eeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCC
Q 002490 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (916)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 361 (916)
+++.+.+..-+|..++|+.+|++||+++ .|..|-+-++++|..+..++...
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaS--------------------------EDh~IDIA~vetGd~~~eI~~~~--- 273 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASAS--------------------------EDHFIDIAEVETGDRVWEIPCEG--- 273 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccC--------------------------ccceEEeEecccCCeEEEeeccC---
Confidence 9999999999999999999999999999 45667788888887766665443
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEcCCC-------CEEEEEEe
Q 002490 362 TSLNQSPRTLSYSPTENAVLICSDVDG-------GSYELYVI 396 (916)
Q Consensus 362 ~~~~~~i~~l~~sp~~~~llv~~~~~~-------g~i~i~~~ 396 (916)
+..+++|+|....|+.+++..+ |.+++|-+
T Consensus 274 -----~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 274 -----PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred -----CceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 7889999999888887775322 45555544
No 74
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=259.60 Aligned_cols=708 Identities=14% Similarity=0.126 Sum_probs=454.9
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEe--cccccCEEEEEEecCCCEEEEEECCCeEEEE
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~--~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vW 78 (916)
|-++|+||+..|.-+.|+.+.+.|-++..+|.|.+|-+-.|.-.... ....+.|.+++|+.+|..++..-.||.|.|=
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 45789999999999999999999999999999999998777544332 2346679999999999999999999999998
Q ss_pred ECCCCeeE-EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC-------eEEE----EEeCCCCceEEEEEe--
Q 002490 79 NYKMHRCL-FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-------TCIS----VLTGHNHYVMCASFH-- 144 (916)
Q Consensus 79 d~~~~~~~-~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~-------~~~~----~~~~h~~~v~~l~~~-- 144 (916)
.++..+.- ..+.+ .....+.|++|...++.+-.+|.+.++|.+.. .+.. .+......|-.+.|.
T Consensus 143 svdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred eeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 87744322 12222 23347889999998888888999999997632 1211 122233446667664
Q ss_pred ------cCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCE
Q 002490 145 ------PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (916)
Q Consensus 145 ------p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 218 (916)
|+...|+++..+|.+.+-.-.+.... .+-...-.+..+.|+++|..
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P----------------------------vv~dtgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEP----------------------------VVVDTGMKIVGAKWNHNGAV 272 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCC----------------------------eEEecccEeecceecCCCcE
Confidence 46678999999998888654442221 11112256778899999999
Q ss_pred EEEEECC---------CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCc------------------
Q 002490 219 IVSGADD---------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS------------------ 271 (916)
Q Consensus 219 l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~------------------ 271 (916)
|++++.+ +.|.+|..-... +.+++.....|++++|-..|-.++.+- |+.
T Consensus 273 LAvcG~~~da~~~~d~n~v~Fysp~G~i---~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~T 348 (1189)
T KOG2041|consen 273 LAVCGNDSDADEPTDSNKVHFYSPYGHI---VGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEET 348 (1189)
T ss_pred EEEccCcccccCccccceEEEeccchhh---eEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeE
Confidence 9998854 356666654433 677777788899999977666555432 333
Q ss_pred --------------EEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCce-----------------------
Q 002490 272 --------------IRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI----------------------- 314 (916)
Q Consensus 272 --------------i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~----------------------- 314 (916)
|.+||..+.+.... .-....++++..+.-.++.-.+++.+
T Consensus 349 vVy~y~~~e~p~y~i~Fwdtk~nek~vK---~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT 425 (1189)
T KOG2041|consen 349 VVYVYQKEELPQYGIMFWDTKTNEKTVK---TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGT 425 (1189)
T ss_pred EEEEEccCCCcceEEEEEecccChhhhh---hhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCC
Confidence 34444433321110 11223455555555555554444432
Q ss_pred --EEEecCCcceE-EecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEE
Q 002490 315 --VFKLERERPAF-AVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSY 391 (916)
Q Consensus 315 --v~~~~~~~~~~-s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i 391 (916)
-++...-+|.| ...+..++.++...+.+|.+...+....+...+..... . .++...|.| +.++.+
T Consensus 426 ~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkeg---r-~h~Ddtp~g--------a~d~~l 493 (1189)
T KOG2041|consen 426 SLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEG---R-FHGDDTPEG--------AQDRTL 493 (1189)
T ss_pred cCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccc---c-ccCCCCccc--------hhhcee
Confidence 11222223433 34555666668888889988765543333211100000 0 112222322 122222
Q ss_pred EEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCc-eEEEeeCCCceeEEEEeCCceEEEE-
Q 002490 392 ELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSILPIAADAIFYAGTGNLLCR- 469 (916)
Q Consensus 392 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~-~~~~i~~~~~v~~l~~s~~g~~l~~- 469 (916)
. .. ..+..+..++|..++.+ .+++..+...|.|.-|++.+. ...+......+.++..+.+.+.++.
T Consensus 494 ~---ys-------~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiI 561 (1189)
T KOG2041|consen 494 E---YS-------TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAII 561 (1189)
T ss_pred e---cc-------ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhh
Confidence 1 10 01345667788878776 568888888999999999974 4445555558999999999888877
Q ss_pred -ECCEEEEEEcC---CCeEEEEE---EcCCeeEEEEcCCCC-EEEEEeCCeEEEEecCC--------cceEEEeeeeeEE
Q 002490 470 -AEDRVVIFDLQ---QRLVLGDL---QTPFVKYVVWSNDME-SVALLSKHAIIIASKKL--------VHQCTLHETIRVK 533 (916)
Q Consensus 470 -~d~~v~l~d~~---~~~~~~~~---~~~~v~~v~~s~d~~-~la~~~~~~i~i~~~~~--------~~~~~~~~~~~i~ 533 (916)
--|.+.++|+. ++..+.-+ ....|..+.|..|+. ++|...+..++|++.+. |-++.+ +...|+
T Consensus 562 d~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~F-edLeit 640 (1189)
T KOG2041|consen 562 DLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLF-EDLEIT 640 (1189)
T ss_pred hhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEe-eceEEE
Confidence 46788888775 44444433 246799999999875 56666788999998653 234444 345667
Q ss_pred EEEEecCCeEEEEcCCceeEEccCCceEEEEEecceE---EEEEE----------eCCEEEEEeCCCCeEEEEeChhHHH
Q 002490 534 SGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPI---YITKV----------SGNTIFCLDRDGKNRAIVIDATEYI 600 (916)
Q Consensus 534 s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~ 600 (916)
|+..+. ++.+..+.-|-++++-. |+.+...+ .-+++ -.++++-+-.+..+..+.+++.|..
T Consensus 641 sVlld~---Il~~pE~pnk~~ii~~~---ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~A 714 (1189)
T KOG2041|consen 641 SVLLDK---ILLTPENPNKTCIIEVM---IKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHA 714 (1189)
T ss_pred EEEHhh---HhcCcCCCCcceEEEEE---ehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhh
Confidence 665543 33333333333322211 11111111 11111 1223333333444444555566655
Q ss_pred HHHHHhcccHHHH-----HhhhccCcccchhHHHHHHHCCCchhhcccccCcc---hhhhhhhhcCCHHHHHHHHHHcC-
Q 002490 601 FKLSLLRKRYDHV-----MSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDER---TRFNLALESGNIQIAVASAKEID- 671 (916)
Q Consensus 601 f~~al~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~~~~---~~f~lal~~g~~~~A~~~a~~~~- 671 (916)
| +..++|..+ ++-+-+..+.-..|.+| -|.+|.|..+.-|.. ...+|.+++|+|-..+++++.-.
T Consensus 715 F---Vrc~dY~Gik~vkrl~~i~s~~~q~aei~~~---~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~ 788 (1189)
T KOG2041|consen 715 F---VRCGDYAGIKLVKRLRTIHSKEQQRAEISAF---YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGS 788 (1189)
T ss_pred h---hhhccccchhHHHHhhhhhhHHHHhHhHhhh---hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCC
Confidence 5 556666543 11111111222334445 355666666664443 35688899999999999998621
Q ss_pred ------CHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCch-hHHHHHHhcCCH
Q 002490 672 ------EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVM-GQFHNALYLGDV 744 (916)
Q Consensus 672 ------~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~-~~~~~~~~~g~~ 744 (916)
....|+.+|+.......++.|.++|.++++.++...+|.+...++.|+++++........+ ..++.+...|..
T Consensus 789 d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 789 DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchH
Confidence 2557999999999999999999999999999999999999999999998876554444443 234555668999
Q ss_pred HHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCC
Q 002490 745 KERVKILESAGHLPLAYITASVHGLQDVAERLAAELGD 782 (916)
Q Consensus 745 ~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~ 782 (916)
++|++.|.+++++..|+.++..+++|.+|.++++++..
T Consensus 869 ~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l 906 (1189)
T KOG2041|consen 869 DQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQL 906 (1189)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999989988887763
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-28 Score=231.49 Aligned_cols=309 Identities=17% Similarity=0.258 Sum_probs=247.3
Q ss_pred ecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 002490 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (916)
Q Consensus 47 ~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~ 126 (916)
+++|+.|++.+.++.+|.+|.+++.|.+..||-..+|+.+.++.||.+.|+|+....+.+.+++|+.|.++++||+++|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 56899999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCceEEEEEecCCCEEEEEEC-----CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 127 CISVLTGHNHYVMCASFHPKEDLVVSASL-----DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 127 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
++..++ .+.+|..+.|+++|++++..+. .+.|.++|++....... ...+...+.
T Consensus 86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--------------------s~ep~~kI~ 144 (327)
T KOG0643|consen 86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID--------------------SEEPYLKIP 144 (327)
T ss_pred EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc--------------------ccCceEEec
Confidence 999998 4678999999999998887764 36799999986442211 111344666
Q ss_pred ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 002490 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (916)
Q Consensus 202 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 281 (916)
.+...++.+.|.|-++.|++|..||.|.+||.++++.. +.....|...|+.++++|+..++++++.|.+-++||+.+.+
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 77899999999999999999999999999999998652 66667899999999999999999999999999999999999
Q ss_pred eeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCC
Q 002490 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (916)
Q Consensus 282 ~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 361 (916)
.+.++.. ..++.+.+++|....++.|+....+-......+. ..=.-++|++-..+.+.. + .+|
T Consensus 224 v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~------------GKFEArFyh~i~eEEigr--v--kGH 286 (327)
T KOG0643|consen 224 VLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRA------------GKFEARFYHLIFEEEIGR--V--KGH 286 (327)
T ss_pred eEEEeee-cccccceecccccceEEecCCceeeeeeeecccc------------cchhhhHHHHHHHHHhcc--c--ccc
Confidence 9998874 4679999999988888776532221110000000 001123344332222211 1 233
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 362 TSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 362 ~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
.++|.+++|+|+|+ ..+++.+||.+++..++..
T Consensus 287 ---FGPINsvAfhPdGk--sYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 287 ---FGPINSVAFHPDGK--SYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ---ccCcceeEECCCCc--ccccCCCCceEEEEEeccc
Confidence 55999999999999 4567778999999987544
No 76
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.8e-25 Score=242.31 Aligned_cols=274 Identities=18% Similarity=0.216 Sum_probs=227.0
Q ss_pred cccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~-~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
.+|+..-+.|+|.|+|..|.+++.||.|++|+..+. +....+.-+...|.+++- ++.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 378999999999999999999999999999997665 445555557788888776 44589999999999999999887
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~ 164 (916)
.-..+..-.-++++++|+.+|++++.||+|-.|++-+.........+.+|..+|.++.|+|++++|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 76666666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeccCCccceeeccccccccccccceEEEEEecc-CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeee
Q 002490 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 243 (916)
..+......+.- ....... .+.+..++|+|++..++..+.|+.|++|+..+... ...
T Consensus 168 ~~~~~~~tl~~v--------------------~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~--~f~ 225 (933)
T KOG1274|consen 168 QDGILSKTLTGV--------------------DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL--QFK 225 (933)
T ss_pred ccchhhhhcccC--------------------CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee--hee
Confidence 986654433220 0011111 45677899999988888888999999999988776 344
Q ss_pred ee--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEE
Q 002490 244 LR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA 307 (916)
Q Consensus 244 ~~--~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~ 307 (916)
++ .+...+++++|+|.|+|||+++.+|.|.|||+.+... ......|.+++|.|+.+.+..
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEE
Confidence 43 3455699999999999999999999999999987221 334567899999998876654
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-27 Score=231.78 Aligned_cols=280 Identities=16% Similarity=0.296 Sum_probs=240.0
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC--CCeEEEEEC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVWNY 80 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~--dg~I~vWd~ 80 (916)
+.|..-.++|+++.|+++|.+|++++.|.+++|||..+++.++++..++-.|..++|......++.++. |.+|+.-++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 345556789999999999999999999999999999999999999988888999999777777777765 889999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
.+.+.++.+.||...|..++.+|-+..+++++.|++|++||++..++...+.....+ .++|.|.|-++|++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEE
Confidence 999999999999999999999999999999999999999999988888777644443 478999999999999888999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEe-ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
+||++...+.... .+.+. +.....+.+.|+|+|++++.++..+.+++.|.-++..
T Consensus 166 LyD~Rs~dkgPF~-----------------------tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~- 221 (311)
T KOG1446|consen 166 LYDLRSFDKGPFT-----------------------TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV- 221 (311)
T ss_pred EEEecccCCCCce-----------------------eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-
Confidence 9999886443221 11222 4456788999999999999999999999999998886
Q ss_pred eeeeeecCCCC---eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec-cCCcEEEEEEecCCCeEEEEe
Q 002490 240 EVDTLRGHMNN---VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 240 ~~~~~~~~~~~---v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~ 309 (916)
..++.++.+. .-..+|+|+++++++|+.||+|.+|+++++..+..+++ +.+++.++.|+|...++++++
T Consensus 222 -~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 222 -KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred -eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 5566555433 25778999999999999999999999999999999988 478899999999888777765
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-29 Score=253.49 Aligned_cols=277 Identities=25% Similarity=0.448 Sum_probs=240.3
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
.+.|++++|||..++=.+...+-.++||+..+....+.+...+..|.+++|..||++|+.|...|.|+|+|+++...+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 47899999999887644444567899999988888888878889999999999999999999999999999888778889
Q ss_pred EecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEEEECCCeEEEEECCC
Q 002490 89 LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGA 166 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~ 166 (916)
+.+|..+|..+.|+|.+. .+++|++|+.+++||+.+......+.+|..+|.|.+|+|... .+++||.||+|++||++.
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 999999999999999654 788899999999999999988778999999999999999654 899999999999999988
Q ss_pred CcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeec
Q 002490 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG 246 (916)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 246 (916)
.... ..-..|..+|..+.+-|.|.++++++ ...|++||+.++... +.....
T Consensus 186 ~~~~---------------------------v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql-l~~~~~ 236 (487)
T KOG0310|consen 186 LTSR---------------------------VVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQL-LTSMFN 236 (487)
T ss_pred CCce---------------------------eEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCcee-hhhhhc
Confidence 5321 13345899999999999999999987 578999999965541 444445
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceE
Q 002490 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIV 315 (916)
Q Consensus 247 ~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v 315 (916)
|...|+|+.+..++..|++++-|+.+++||+.+.+.+..+. -.++|.+++.+|++..+++|..+|+..
T Consensus 237 H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceee
Confidence 99999999999999999999999999999998888888876 567899999999999999998777643
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.3e-29 Score=231.21 Aligned_cols=293 Identities=18% Similarity=0.311 Sum_probs=252.4
Q ss_pred eEEEecccccCEEEEEEec---CCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 002490 43 LIDRFDEHDGPVRGVHFHK---SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (916)
Q Consensus 43 ~~~~~~~h~~~V~~i~fsp---~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~i 119 (916)
...+..+|..||..++||| +|-+|++++.|+.-.+-+-++|..+.++.+|.+.|+....+.+-...++++.|-+-++
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3455679999999999985 7889999999999999999999999999999999999999999889999999999999
Q ss_pred EeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEE
Q 002490 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (916)
Q Consensus 120 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (916)
||.-+|..+.++. |.+-|.+++|+.|.++|++|+.+..+|+||++..+... ..
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App--------------------------~E 138 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP--------------------------KE 138 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc--------------------------hh
Confidence 9999999998887 89999999999999999999999999999998755432 25
Q ss_pred EeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 200 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
+.+|.++|..+.|....+.|+++++|++||+||.++++. +.++. ...+|+++.++++|++|.++ ..++|.+||..+
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~--v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks 214 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE--VQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS 214 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE--EEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence 678999999999999999999999999999999999986 66655 45789999999999876655 457899999999
Q ss_pred CceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCC
Q 002490 280 RTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP 359 (916)
Q Consensus 280 ~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~ 359 (916)
...+..++. ...|.+.+.+|+...+++|. .+..++.||+.++..+... ..
T Consensus 215 f~~lKs~k~-P~nV~SASL~P~k~~fVaGg--------------------------ed~~~~kfDy~TgeEi~~~---nk 264 (334)
T KOG0278|consen 215 FGLLKSYKM-PCNVESASLHPKKEFFVAGG--------------------------EDFKVYKFDYNTGEEIGSY---NK 264 (334)
T ss_pred ccceeeccC-ccccccccccCCCceEEecC--------------------------cceEEEEEeccCCceeeec---cc
Confidence 888888764 45688899999999888887 4567889999998876653 13
Q ss_pred CCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC
Q 002490 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (916)
Q Consensus 360 ~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~ 401 (916)
++ .++|.++.|+|+|. +.+++++||+++||.......
T Consensus 265 gh---~gpVhcVrFSPdGE--~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 265 GH---FGPVHCVRFSPDGE--LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CC---CCceEEEEECCCCc--eeeccCCCceEEEEEecCCCc
Confidence 33 33999999999998 556777999999999865543
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=265.30 Aligned_cols=281 Identities=27% Similarity=0.485 Sum_probs=247.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE-ecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~-~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~ 86 (916)
|...+.+..|+ ..++++++.+++|++||..++..+.. +.+|.+.|.+++|...+.++++|+.|.+++|||..+|.|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56788899998 56789999999999999999998888 9999999999999888889999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166 (916)
Q Consensus 87 ~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~ 166 (916)
.++.+|...|+++...+. .+++|+.|.+|++|+++++.++..+.+|..+|.++..+ +.++++|+.|++|++||+.+
T Consensus 285 ~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 999999999999877653 68889999999999999999999999999999999997 78999999999999999986
Q ss_pred CcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC-cceeeeeee
Q 002490 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTLR 245 (916)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~ 245 (916)
++ +...+.+|...|.++.+.+. +.+++|+.|+.|++||+.+. ++ +.++.
T Consensus 361 ~~---------------------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c--~~tl~ 410 (537)
T KOG0274|consen 361 GK---------------------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC--IHTLQ 410 (537)
T ss_pred ce---------------------------eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh--hhhhc
Confidence 54 45588899999999988876 78999999999999999999 76 89999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec-cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcce
Q 002490 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPA 324 (916)
Q Consensus 246 ~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~ 324 (916)
+|..-+.++.+ .+++|++++.|++|++||..++++++++.. +...+..++.. ...+++++
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~--------------- 471 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS--------------- 471 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe---------------
Confidence 99999877765 578999999999999999999999999988 55777777665 22333332
Q ss_pred EEecCCEEEEEeCCeEEEEEccCCceeeeE
Q 002490 325 FAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (916)
Q Consensus 325 ~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~ 354 (916)
.++.+.+||+.+++....+
T Consensus 472 -----------~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 472 -----------DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred -----------cCCeeEEEecccCchhhhh
Confidence 5688899999887766544
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-28 Score=264.39 Aligned_cols=254 Identities=17% Similarity=0.368 Sum_probs=207.5
Q ss_pred ccccc-ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--------------------------------C-------
Q 002490 2 LTKFE-TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--------------------------------G------- 41 (916)
Q Consensus 2 l~~l~-~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~--------------------------------~------- 41 (916)
.+.+. .|.+.|.++.||+||+|||+|+.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 35677 8999999999999999999999999999998754 0
Q ss_pred ---------------------ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEE
Q 002490 42 ---------------------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (916)
Q Consensus 42 ---------------------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~ 100 (916)
++++.|.+|.+.|..+.||.++ +|++++.|.+|++|++....|+..+. |.+.|+||+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 1234567899999999999886 89999999999999999999999987 999999999
Q ss_pred EcC-CCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccce
Q 002490 101 FHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (916)
Q Consensus 101 fs~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 179 (916)
|+| |.+++++|+-|+.||||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I---- 491 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI---- 491 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE----
Confidence 999 66799999999999999998776554443 447899999999999999999999999999988665432110
Q ss_pred eeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeeeeeecCCC--CeEEEEE
Q 002490 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMN--NVSCVMF 256 (916)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~l~~ 256 (916)
. +- .. .-..| +.|+.+.|.|... .+++.+.|..|+|+|.++... +..++|+.+ .-....|
T Consensus 492 --~-----~~------~~-Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 492 --R-----LH------NK-KKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL--VHKFKGFRNTSSQISASF 554 (712)
T ss_pred --e-----ec------cC-ccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhh--hhhhcccccCCcceeeeE
Confidence 0 00 00 01112 3799999998654 477778899999999988776 666766543 2346789
Q ss_pred ccCCCEEEEEeCCCcEEEEECCC
Q 002490 257 HAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 257 sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
+.||++|+++++|..|++|+...
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCC
Confidence 99999999999999999999854
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.5e-29 Score=260.08 Aligned_cols=360 Identities=21% Similarity=0.380 Sum_probs=275.8
Q ss_pred EEEEe-cCCCEEEEEECCCeEEEEECCCC------eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC--e
Q 002490 56 GVHFH-KSQPLFVSGGDDYKIKVWNYKMH------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--T 126 (916)
Q Consensus 56 ~i~fs-p~~~~l~s~~~dg~I~vWd~~~~------~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~--~ 126 (916)
.+..+ |.+++|.|||.||.|++|++... .++.++..|.+.|..+....+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 46678999999999999998632 247788899999999999999999999999999999999877 5
Q ss_pred EEEEEeCCCCceEEEEE-ecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEE-eccC
Q 002490 127 CISVLTGHNHYVMCASF-HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-EGHD 204 (916)
Q Consensus 127 ~~~~~~~h~~~v~~l~~-~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 204 (916)
|..++..|..+|.|+++ .++...+++|+.|+.|.+||++++....... .+......+ .|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-----------------~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-----------------FNNVTVNSLGSGPK 171 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-----------------ccccccccCCCCCc
Confidence 77888999999999999 7788899999999999999999763311100 011111122 2788
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE
Q 002490 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 284 (916)
.+|.+++-+++|..|++|+..+.+++||.++.+. +..++||+.+|.++..++||+.++++|.||+|++||+...+++.
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 9999999999999999999999999999999887 88899999999999999999999999999999999999999999
Q ss_pred EeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCC-ceeeeEEecCCCCCC
Q 002490 285 TFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ-KDTQVIPIRRPGSTS 363 (916)
Q Consensus 285 ~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~ 363 (916)
++..|...+|++..+|+-..+.+|+. ++.|..-|+.+. +...+..- .+
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~r--------------------------d~~i~~Tdl~n~~~~tlick~---da-- 298 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGR--------------------------DGNIYRTDLRNPAKSTLICKE---DA-- 298 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCC--------------------------CCcEEecccCCchhheEeecC---CC--
Confidence 99999999999999999888888874 444555566653 22222221 22
Q ss_pred CCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC
Q 002490 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (916)
Q Consensus 364 ~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~ 443 (916)
++..+..+...+.+-+++ .++.|+-|..... ..+++.+++...++ +......+..+
T Consensus 299 ---Pv~~l~~~~~~~~~WvtT--tds~I~rW~~~~~------------------~~l~~s~~~~~~~T-~~~~~~~~~~~ 354 (735)
T KOG0308|consen 299 ---PVLKLHLHEHDNSVWVTT--TDSSIKRWKLEPD------------------IALSVSGDLDFFST-DSNNHSCDLTN 354 (735)
T ss_pred ---chhhhhhccccCCceeee--ccccceecCCccc------------------cccccCCCCCcccc-cCCCccccccC
Confidence 677777775544432222 3468888865321 24445555555333 55555555544
Q ss_pred ceEEEeeCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEE
Q 002490 444 EVVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQ 489 (916)
Q Consensus 444 ~~~~~i~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~ 489 (916)
..-..+.+...+..-+.-.|-+.+++ ..|.+.+||+-.+..+..+.
T Consensus 355 tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 355 TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 44444555557777777888888888 67899999997777666554
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.5e-29 Score=237.98 Aligned_cols=284 Identities=23% Similarity=0.354 Sum_probs=235.8
Q ss_pred ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE--------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 002490 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL--------LGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l--------~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iw 120 (916)
+..+-+.|..|||||++|++|+-||-|.|||+.+|+....+ .-+.++|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34566889999999999999999999999999998765433 3578899999999999999999999999999
Q ss_pred eCCCCeEEEEEe-CCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEE
Q 002490 121 NWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (916)
Q Consensus 121 d~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (916)
.+++|+|++.+. .|...|+|+.|+.|+..+++++.|.++|+.-+.+++... .
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---------------------------E 343 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---------------------------E 343 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---------------------------H
Confidence 999999999986 899999999999999999999999999999998876543 6
Q ss_pred EeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECC
Q 002490 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 200 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~ 278 (916)
+.||..-|+.+.|.++|..+++++.||+|++|+..+..+.......+...+|.++..-|. ...++++...+++.+.++.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 778999999999999999999999999999999999988333333455667888887774 4688888889999999985
Q ss_pred CCceeEEee---ccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 279 KRTGVQTFR---REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 279 ~~~~~~~~~---~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
|+.++++. ++.+.+.+.+.+|.|.++.+.. .|+.++.+.+.+|+....+.
T Consensus 424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--------------------------ED~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--------------------------EDGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred -ceEEeeeccCCccCCceEEEEecCCCcEEEEEc--------------------------cCcEEEEEEeecCceeeeee
Confidence 77777775 3456677888888888776655 45667888888887766665
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
+.. . .+-.++-+|..+.+ ++-++||.+++|.
T Consensus 477 VhE----k---dvIGl~HHPHqNll--AsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 VHE----K---DVIGLTHHPHQNLL--ASYSEDGLLKLWK 507 (508)
T ss_pred ccc----c---cccccccCcccchh--hhhcccchhhhcC
Confidence 543 2 66778889987744 3334788999984
No 84
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=9e-27 Score=258.56 Aligned_cols=266 Identities=16% Similarity=0.228 Sum_probs=209.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE-------------EEecccccCEEEEEEec-CCCEEEEEECCC
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-------------DRFDEHDGPVRGVHFHK-SQPLFVSGGDDY 73 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~-------------~~~~~h~~~V~~i~fsp-~~~~l~s~~~dg 73 (916)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.++|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666667778666677766676777775443322 14678999999999999 888999999999
Q ss_pred eEEEEECCCC-------eeEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec
Q 002490 74 KIKVWNYKMH-------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145 (916)
Q Consensus 74 ~I~vWd~~~~-------~~~~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p 145 (916)
+|++||+.++ .++..+.+|...|.+++|+|++ .+|++++.|++|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999764 3567889999999999999985 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC-eeEEEEcCCCCEEEEEE-
Q 002490 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG-VNWAAFHPTLPLIVSGA- 223 (916)
Q Consensus 146 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~- 223 (916)
++++|++++.|++|++||+++++. ...+.+|... +..+.|++++..+++++
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~---------------------------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTI---------------------------VSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcE---------------------------EEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 999999999999999999987543 2345667654 45678899888777654
Q ss_pred ---CCCcEEEEECCCCcceeeeeeec-CCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeEEeec-cCCcEEEEE
Q 002490 224 ---DDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTGVQTFRR-EHDRFWILA 297 (916)
Q Consensus 224 ---~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~ 297 (916)
.|+.|++||+++... ++..... +...+....|++++++|++++ .|+.|++||+.++..+..... ...++..++
T Consensus 232 s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred CCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 478999999987553 1333322 334566678999999999887 499999999998887665543 234556677
Q ss_pred EecC
Q 002490 298 SHPE 301 (916)
Q Consensus 298 ~sp~ 301 (916)
+.|.
T Consensus 311 ~~pk 314 (493)
T PTZ00421 311 MMPK 314 (493)
T ss_pred eccc
Confidence 7664
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1e-27 Score=244.25 Aligned_cols=285 Identities=15% Similarity=0.267 Sum_probs=227.3
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc----eEEEec-ccccCEEEEEEecCCCEEEEEECCCeEEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~----~~~~~~-~h~~~V~~i~fsp~~~~l~s~~~dg~I~vW 78 (916)
+|++|+..|+++++.|.|-+|++|+.|-+|++||+.... ..+.+. .....|+++.|+++|..|++.+.....+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 578999999999999999999999999999999986431 122222 234468999999999988888888899999
Q ss_pred ECCCCeeEEE------------EecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCe-EEEEEe-----CCCCceE
Q 002490 79 NYKMHRCLFT------------LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT-CISVLT-----GHNHYVM 139 (916)
Q Consensus 79 d~~~~~~~~~------------l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~-~~~~~~-----~h~~~v~ 139 (916)
|-........ -+||...++|.+|+|..+ .+++++.||++||||+..-+ ...+++ +..-+++
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 9654333322 248999999999999765 88999999999999997433 233332 3345789
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCC--CeeEEEEcCCCC
Q 002490 140 CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLP 217 (916)
Q Consensus 140 ~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~ 217 (916)
+++|+|++++|++|+.||+|.+|+..+..... ...+-..|.. .|+|++||++|+
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p------------------------~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP------------------------VMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCccccc------------------------ceEeeeccCCCCceeEEEeccccc
Confidence 99999999999999999999999985533221 2345667877 899999999999
Q ss_pred EEEEEECCCcEEEEECCCCcceeeeeeecC--CCCeEEEEEccCCCEEEEEeC------CCcEEEEECCCCceeEEeecc
Q 002490 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGH--MNNVSCVMFHAKQDIIVSNSE------DKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~ 289 (916)
+|++-+.|+++++||++..+. ++....+. ..+-+.++|||+.++|++|+. .|.+.+||..+...++.+...
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred hhhhccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 999999999999999998764 23333322 234567899999999999863 567999999999999999888
Q ss_pred CCcEEEEEEecCCCeEEEEeCCCc
Q 002490 290 HDRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 290 ~~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
...|..+.|||.-+.+.+|+.+|.
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred CceEEEEeecchhhheeeecCCCc
Confidence 889999999999998888775443
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=231.56 Aligned_cols=291 Identities=23% Similarity=0.412 Sum_probs=246.8
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
+++.|+||.+.|..++-....+.+.+++.|.+.+||.+++|.++..+.+|.+.|++|.|++.+.++++++.|++-.||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ------CC----------------------------------CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 002490 81 ------KM----------------------------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (916)
Q Consensus 81 ------~~----------------------------------~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iw 120 (916)
.. ..++..+.+|...|.+..|...|+.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 01345678999999999999999999999999999999
Q ss_pred eCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEE
Q 002490 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (916)
Q Consensus 121 d~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (916)
|++++..+..+.||....+.++-+|..+++++++.|.+.++||++..-. ...++
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~--------------------------sV~VF 353 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ--------------------------SVAVF 353 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc--------------------------eeeee
Confidence 9999999999999999999999999999999999999999999974211 23478
Q ss_pred eccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
.||...|+++.|.-+. .+++|++|++|++||+++... ++.+++ ...++..++.+..+..|+.--.+..|++||++..
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred cccccceeEEEEecCC-ceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 9999999999999875 589999999999999998765 355655 4578889999988888888888899999999744
Q ss_pred ceeE----EeeccCCcEEEEEEec---CCCeEEEEeCCCceEEEecC
Q 002490 281 TGVQ----TFRREHDRFWILASHP---EMNLLAAGHDSGMIVFKLER 320 (916)
Q Consensus 281 ~~~~----~~~~~~~~i~~l~~sp---~~~~la~g~~~~~~v~~~~~ 320 (916)
.... .-++|..-+.+.+|.. -.+++.+|.|..+.-|++..
T Consensus 431 RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 431 RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 3221 2234556688888864 45677777776666666543
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-26 Score=221.74 Aligned_cols=292 Identities=18% Similarity=0.274 Sum_probs=240.1
Q ss_pred CceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC--CCcEE
Q 002490 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD--DQTIR 118 (916)
Q Consensus 41 ~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~--dg~I~ 118 (916)
.+..+.|..-.+.|.++.|+++|.++++++.|.++++||..+++++.++..+...+..++|......++.++. |.+||
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3455666667889999999999999999999999999999999999999988889999999888777777776 88999
Q ss_pred EEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
..++.+.+.++.+.||...|.++..+|-++.+++++.|++|++||++..+...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg--------------------------- 136 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG--------------------------- 136 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce---------------------------
Confidence 99999999999999999999999999999999999999999999998644322
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeee---cCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002490 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (916)
Q Consensus 199 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~s~~~dg~i~vw 275 (916)
.+ +..+-..++|.|+|-++|++.....|++||++.-..-+..++. +.....+.+.|+|+|++|+.++..+.+++.
T Consensus 137 ~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 137 LL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred EE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 11 2234456899999999999988889999999876443344443 335678899999999999999999999999
Q ss_pred ECCCCceeEEeeccCCcE---EEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceee
Q 002490 276 DVTKRTGVQTFRREHDRF---WILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (916)
Q Consensus 276 d~~~~~~~~~~~~~~~~i---~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~ 352 (916)
|.-+|..+.++..+...- ...+++|+++++.+|+ .|++|.+|+++++..+.
T Consensus 215 DAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs--------------------------~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 215 DAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS--------------------------DDGTIHVWNLETGKKVA 268 (311)
T ss_pred EccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec--------------------------CCCcEEEEEcCCCcEee
Confidence 999999998887665432 5678889999999888 45789999999888766
Q ss_pred eEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEee
Q 002490 353 VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (916)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~ 397 (916)
...-. + ..+++++.|+|.-.+++. ++ ..+.+|-..
T Consensus 269 ~~~~~---~---~~~~~~~~fnP~~~mf~s-a~---s~l~fw~p~ 303 (311)
T KOG1446|consen 269 VLRGP---N---GGPVSCVRFNPRYAMFVS-AS---SNLVFWLPD 303 (311)
T ss_pred EecCC---C---CCCccccccCCceeeeee-cC---ceEEEEecc
Confidence 55433 1 228889999998554433 22 578888654
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5e-27 Score=251.27 Aligned_cols=725 Identities=13% Similarity=0.138 Sum_probs=434.1
Q ss_pred EEEEEeCCCCEEEEEec----CCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 13 KGLSFHSKRPWILASLH----SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 13 ~~l~~sp~~~~la~~~~----dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
+-.+|||..+++|+++. .|+|.||- .+|++.+... -.-.+++++|||..-.|++|-.-|.+.||...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 44679999999999864 58899986 6787554332 222356799999999999999999999999887776666
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--CCC--Cce--EEEEE-------------------
Q 002490 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--GHN--HYV--MCASF------------------- 143 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~--~~v--~~l~~------------------- 143 (916)
...|..+|..+.||++|..++++..-|.+.+|.......+...+ .|. ..+ .|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 67899999999999999999999999999999875221111100 000 000 11111
Q ss_pred ----------------------ecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 144 ----------------------HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 144 ----------------------~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
.|+|..++.++.+|+|+-.|-.+.......-.+. -..+|-.....+.....
T Consensus 177 ~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~-------vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSE-------VQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccch-------HHHHHhcccceEEEEee
Confidence 2345566666777777666644322211110000 00011000000000000
Q ss_pred ------------ccCCCeeEEEEcC-----CCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEE
Q 002490 202 ------------GHDRGVNWAAFHP-----TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIV 264 (916)
Q Consensus 202 ------------~~~~~v~~~~~~p-----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 264 (916)
|....+..+..+. .|. ++++-..|.++ .+.+ .. ......+.|++++..+..+.
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGg-iA~sEssGvLr----~~eK---yg--~e~ge~~~c~cY~~~~~~l~ 319 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGG-IACSESSGVLR----KSEK---YG--LELGEGILCMCYGEKEIRLW 319 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCc-ccccccccccc----CCcc---hh--hhcCCceEEEEEeccceEEE
Confidence 0000001111110 011 22222222110 0000 00 11345799999999999999
Q ss_pred EEeCCCcEEEEECCCC-------ceeEEe---eccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEE
Q 002490 265 SNSEDKSIRVWDVTKR-------TGVQTF---RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (916)
Q Consensus 265 s~~~dg~i~vwd~~~~-------~~~~~~---~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~ 334 (916)
.|...|.+.+|--... ....++ +...+.|..+.|.|-.+.+++.+...+.+.. +++..+.+...++.
T Consensus 320 agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~~h~~~~~A 396 (1416)
T KOG3617|consen 320 AGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTVKHRGKMAA 396 (1416)
T ss_pred ecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHHHHhhhhHH
Confidence 9999999999953221 112222 2344678999999987777776655554432 33333333333333
Q ss_pred E--eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCcccccccc
Q 002490 335 A--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKK 412 (916)
Q Consensus 335 ~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~ 412 (916)
+ ..+++.+--..+|....+ .. ..++..++.+.+ .+++..+ .+|..|++....+.... ......
T Consensus 397 ~q~ss~S~~L~hc~sGv~~~l-~~--------~~~~~gi~l~e~--~lvvwNg---r~v~~y~lq~SG~la~~-~~~tF~ 461 (1416)
T KOG3617|consen 397 IQTSSNSFTLLHCTSGVSQDL-KL--------SIPSAGICLGEK--QLVVWNG---RTVVTYDLQTSGSLATI-QCTTFS 461 (1416)
T ss_pred hhhcCCceEEEeeccchhhhh-hh--------ccchhhheeccc--eEEEEcC---ceEEEEEecccchhHHH-hhhhhc
Confidence 2 444444443333322111 11 115555666554 5666655 79999999644321111 122222
Q ss_pred CceeEEEEEeCCcEEEEEcCCCEEEEEccCCceEEEeeCCC---ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEE
Q 002490 413 GLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI---AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGD 487 (916)
Q Consensus 413 ~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~---~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~ 487 (916)
....+++....|-| +.. ...|.++.+.+...+.+..+. .|.-+..+ |.+++. ..+.+.-||+...+....
T Consensus 462 cet~~la~~nqN~y--cie-s~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvsr~e~ka~ 536 (1416)
T KOG3617|consen 462 CETTSLAIVNQNLY--CIE-SDKVFVRTLQGTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVSRAELKAV 536 (1416)
T ss_pred cccchHhHhhcceE--Eec-cCcEEEEecchhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhhhhccccc
Confidence 23344444444322 222 467888988887777776664 33333333 455554 445566667665554332
Q ss_pred EE----------cCCeeEEEEcCCCCEEEEEe---C----CeEEEEecCCcceEEE----------ee--eeeEEEEEEe
Q 002490 488 LQ----------TPFVKYVVWSNDMESVALLS---K----HAIIIASKKLVHQCTL----------HE--TIRVKSGAWD 538 (916)
Q Consensus 488 ~~----------~~~v~~v~~s~d~~~la~~~---~----~~i~i~~~~~~~~~~~----------~~--~~~i~s~~w~ 538 (916)
.. .+....+..+..|+.+.+.. + .++++||.+.+++... .| +...-...||
T Consensus 537 ~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~ts~pvr~fWD 616 (1416)
T KOG3617|consen 537 SYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESSTSPPVRFFWD 616 (1416)
T ss_pred ccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCccccccccccCCCCceeeec
Confidence 21 14456666666665544332 2 3899999887653211 11 1111235788
Q ss_pred cCCeEEEEcC--------Cc--------------eeEE--ccCCceEEEEEecceE-----EEEEEeCCEEEEEeCCCCe
Q 002490 539 DNGVFIYTTL--------NH--------------IKYC--LPNGDSGIIRTLDVPI-----YITKVSGNTIFCLDRDGKN 589 (916)
Q Consensus 539 ~~~~~l~~t~--------~~--------------~~~~--l~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 589 (916)
.+...++.+. .. +-.+ ++..++|++.....+- .++++.-+..|++.+.+-.
T Consensus 617 ~~epRllv~E~~~~~p~s~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~~~~~~~Ll~~~VPn~yfvRk~~~d 696 (1416)
T KOG3617|consen 617 ENEPRLLVVECIHVEPESTPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQKNLHCGKLLSVSVPNFYFVRKSGWD 696 (1416)
T ss_pred CCCCcEEEEEeeecccccCcccccCCCccccccceEEEeeecccccceeeeecccCCCCccceeeeecCceEEEeccccc
Confidence 7766555422 00 0011 3566777776655432 4566666666666533222
Q ss_pred EEEEeCh---------------------------hHHHHHHHHhcccHHHHHhhhcc--CcccchhHHHHHHHCCCchhh
Q 002490 590 RAIVIDA---------------------------TEYIFKLSLLRKRYDHVMSMIRN--SQLCGQAMIAYLQQKGFPEVA 640 (916)
Q Consensus 590 ~~~~i~~---------------------------~~~~f~~al~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~e~a 640 (916)
+.-+.++ ..+.|...+..|++|.|++.|+. +..+..++.++..+....++|
T Consensus 697 ~ed~~ee~~i~~~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVA 776 (1416)
T KOG3617|consen 697 EEDNREERTIGKTLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVA 776 (1416)
T ss_pred ccccccccccchhhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHH
Confidence 2211111 11334445667999999998774 345667788887777777777
Q ss_pred cccccCcch--------------------hhhhhhhcCCHHHHHHHHH--------------------------------
Q 002490 641 LHFVKDERT--------------------RFNLALESGNIQIAVASAK-------------------------------- 668 (916)
Q Consensus 641 l~~~~~~~~--------------------~f~lal~~g~~~~A~~~a~-------------------------------- 668 (916)
.-++...+. -.-||+++|++++|+.+++
T Consensus 777 kVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH 856 (1416)
T KOG3617|consen 777 KVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH 856 (1416)
T ss_pred HHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee
Confidence 665532221 1236777777777776653
Q ss_pred ---------------------------------------------------HcCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 002490 669 ---------------------------------------------------EIDEKDHWYRLGVEALRQGNAGIVEYAYQ 697 (916)
Q Consensus 669 ---------------------------------------------------~~~~~~~w~~la~~al~~g~~~~A~~~y~ 697 (916)
...++.+|+++|++...+|+.+.|...|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 12347899999999999999999999999
Q ss_pred hhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHHHHh---cCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHH
Q 002490 698 RTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALY---LGDVKERVKILESAGHLPLAYITASVHGLQDVAE 774 (916)
Q Consensus 698 ~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~---~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~ 774 (916)
.++|+-.+.++.|+.|+.+|+.++ |+..++..+-||++.. .|++-+|+++|.++.-+.-|+.++|+|++.|+..
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~i---A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARI---AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHH---HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999666 6788888888888765 8999999999999999999999999999999888
Q ss_pred HHHHHhCC
Q 002490 775 RLAAELGD 782 (916)
Q Consensus 775 ~l~~~~~~ 782 (916)
.++-..++
T Consensus 1014 nlal~s~~ 1021 (1416)
T KOG3617|consen 1014 NLALMSGG 1021 (1416)
T ss_pred HHHhhcCc
Confidence 87754443
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=245.30 Aligned_cols=275 Identities=19% Similarity=0.302 Sum_probs=237.7
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~--~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
..+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..++|+++.|.+++..+++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4578899999999999999999999999999999987665 77888889999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
.+.+...++.+|.+.|+++.|......+++++.|.+|++||++...|..++. ..+.+..+..+ ...+++|..|++||
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999999888789999999999999999988887664 23455566655 55789999999999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCccee
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
+||+++..... ....+ +.|+++..++++..+.+++.|.++.+.|+++...
T Consensus 326 fwD~Rs~~~~~---------------------------sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-- 375 (459)
T KOG0288|consen 326 FWDIRSADKTR---------------------------SVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-- 375 (459)
T ss_pred EEeccCCceee---------------------------EeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE--
Confidence 99998866543 33333 4899999999999999999999999999999875
Q ss_pred eeeeec----CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc--EEEEEEecCCCeEEEEeC
Q 002490 241 VDTLRG----HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR--FWILASHPEMNLLAAGHD 310 (916)
Q Consensus 241 ~~~~~~----~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~~~~la~g~~ 310 (916)
..++.. .....+.+.|||++.|+++||.||.|+||++.++++...+...... |.+++|+|.|..+++++.
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 333322 2234788999999999999999999999999999998888766655 999999999988877664
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2e-27 Score=264.84 Aligned_cols=291 Identities=21% Similarity=0.300 Sum_probs=236.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEe--cCCeEEEEECCC------------CceEEEecccccCEEEEEEecCCCEEEEEECCC
Q 002490 8 KSNRVKGLSFHSKRPWILASL--HSGVIQLWDYRM------------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~--~dg~I~lwd~~~------------~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg 73 (916)
+..+|.+++.||++..+|+|+ .||.+.||+... .+.+.+...|.+.|+|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 799999998632 234556678999999999999999999999999
Q ss_pred eEEEEECCC------------------CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCC
Q 002490 74 KIKVWNYKM------------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN 135 (916)
Q Consensus 74 ~I~vWd~~~------------------~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~ 135 (916)
.|.||.... .++...+.+|...|..++|+|++.++++++.|++|.|||..+...+.++.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 24677889999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC
Q 002490 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (916)
Q Consensus 136 ~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 215 (916)
+.|..+.|.|-|++|++-+.|++|++|++..-........ .+.-..-..-+..+.|+||
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~---------------------pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK---------------------PFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc---------------------chhhCCCcceeeecccCCC
Confidence 9999999999999999999999999999765322211110 0000112234678899999
Q ss_pred CCEEEEEEC----CCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-----CC------------EEEEEeCCCcEEE
Q 002490 216 LPLIVSGAD----DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QD------------IIVSNSEDKSIRV 274 (916)
Q Consensus 216 ~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~------------~l~s~~~dg~i~v 274 (916)
|.+|++... -.++.|.+..+.+. -..+.||..++.++.|+|. .+ .+|+|+.|++|.|
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 999998753 34678887766554 6778899999999999981 11 6789999999999
Q ss_pred EECCCCceeEEee-ccCCcEEEEEEecCCCeEEEEe-CCCceEEEecCC
Q 002490 275 WDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGH-DSGMIVFKLERE 321 (916)
Q Consensus 275 wd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~la~g~-~~~~~v~~~~~~ 321 (916)
|.....+++.... ..+..|..++|+|||..|.+++ |+.+.++.++.+
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9988777766543 3456899999999998666555 666777777653
No 91
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-27 Score=233.49 Aligned_cols=249 Identities=28% Similarity=0.472 Sum_probs=217.1
Q ss_pred cccccccCCCEEEEEEeCCCC---EEEEEecCCeEEEEECCCCce----EEEecccccCEEEEEEecCCCEEEEEECCCe
Q 002490 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGTL----IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~---~la~~~~dg~I~lwd~~~~~~----~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~ 74 (916)
...+.||+++|.+++|.-..+ .+++++.|.++++|.++.++. ++...+|..+|-++...++|..+++|+.|.+
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccce
Confidence 356789999999999865444 599999999999999987753 3444599999999999999999999999999
Q ss_pred EEEEECC-------------------------CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 75 IKVWNYK-------------------------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 75 I~vWd~~-------------------------~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
|++|+.. ++.++.++.||..+|.++.|++ ...+++++.|.+|+.||+.++.++.
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee
Confidence 9999932 1235668889999999999998 5689999999999999999999999
Q ss_pred EEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeE
Q 002490 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (916)
Q Consensus 130 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 209 (916)
++.+ +..+.|+..+|..++|++|+.|..+++||.+++. ...+.+.+.+|..-|.+
T Consensus 296 ~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------------------------gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 296 TLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------------------------GSVVSQSLIGHKNWVSS 350 (423)
T ss_pred eeec-CcceeEeecccccceeeecCCCCceeecCCCCCC------------------------CceeEEeeecchhhhhh
Confidence 8885 5678999999999999999999999999998853 33477899999999999
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 210 AAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 210 ~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
+.|+|... .|++|+.|+++++||+++.+. ++..+.+|...|.++.|. ++.+|++|+.|++|+++.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999765 688999999999999999883 389999999999999998 67799999999999998643
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-28 Score=224.62 Aligned_cols=242 Identities=24% Similarity=0.452 Sum_probs=207.7
Q ss_pred CCCEEEEEEeCCC-CEEEEEecCCeEEEEECCCC-ceEEEecccccCEEEEEEecC-CCEEEEEECCCeEEEEECCCCee
Q 002490 9 SNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRC 85 (916)
Q Consensus 9 ~~~V~~l~~sp~~-~~la~~~~dg~I~lwd~~~~-~~~~~~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~vWd~~~~~~ 85 (916)
.+.+..++|+++. ..+++++-||+++|||.... .+++.+++|...|.++.|++. +..+++++-|++||+|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 3578899999954 57788888999999996433 678899999999999999984 45688889999999999999999
Q ss_pred EEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec-CCCEEEEEECCCeEEEEE
Q 002490 86 LFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 86 ~~~l~~h~~~v~~v~fs~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s~s~dg~v~vwd 163 (916)
+.++.+|...|....|+|. .+.++++|.|+++++||++..-....+..|...+.|+.|+. +.+.+++|+.|+.|+.||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 9999999999999999995 45899999999999999985444444888999999999987 446899999999999999
Q ss_pred CCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-CEEEEEECCCcEEEEECCCCcceeee
Q 002490 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVD 242 (916)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (916)
+++.+. ....+.+|.-.|..+.|||.. .+|++++.|-+++|||...... .+.
T Consensus 220 ir~~r~--------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e 272 (311)
T KOG0277|consen 220 IRNLRT--------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-AIE 272 (311)
T ss_pred hhhccc--------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-hhh
Confidence 998664 245778999999999999964 5899999999999999885443 256
Q ss_pred eeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEC
Q 002490 243 TLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 243 ~~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~vwd~ 277 (916)
+...|+.-+..+.|++ +..++++++.|+.+.||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6678899999999998 5679999999999999984
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.4e-27 Score=238.26 Aligned_cols=277 Identities=19% Similarity=0.335 Sum_probs=238.4
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE----EE---e-----------cccccCEEEEEEecCCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI----DR---F-----------DEHDGPVRGVHFHKSQP 64 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~----~~---~-----------~~h~~~V~~i~fsp~~~ 64 (916)
+.+..|.-+|+|++++|+..+.++++.+|+|.=|++.+|+.. .+ + +.|...|.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999999999888633 11 1 26888899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEe
Q 002490 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (916)
Q Consensus 65 ~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~ 144 (916)
+|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++.+|...|.++.-.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999988
Q ss_pred cCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC
Q 002490 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (916)
Q Consensus 145 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 224 (916)
..++.+-+|+.|+++++|++... .+..+.+|.+.+-|++|-.+. .+++|++
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ee----------------------------sqlifrg~~~sidcv~~In~~-HfvsGSd 346 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEE----------------------------SQLIFRGGEGSIDCVAFINDE-HFVSGSD 346 (479)
T ss_pred cccceEEeccccceeEEEecccc----------------------------ceeeeeCCCCCeeeEEEeccc-ceeeccC
Confidence 88877878889999999999442 234778889999999998774 6999999
Q ss_pred CCcEEEEECCCCcceeeeeee----------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEeeccC
Q 002490 225 DRQVKLWRMNETKAWEVDTLR----------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREH 290 (916)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~----------~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~ 290 (916)
+|.|.+|++...++..+.... .+...|++++..|..+++++|+.+|.|++|-+..+ +++..+. -.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~ 425 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LV 425 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cc
Confidence 999999999888763222111 11237899999999999999999999999998877 3445554 56
Q ss_pred CcEEEEEEecCCCeEEEEe
Q 002490 291 DRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 291 ~~i~~l~~sp~~~~la~g~ 309 (916)
+-|++++|+++|..+++|.
T Consensus 426 GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cEEEEEEEccCCCEEEEec
Confidence 7899999999999877765
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.3e-27 Score=223.45 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=224.9
Q ss_pred cCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCC-CceE-EEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 002490 8 KSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM-GTLI-DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 8 h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~-~~~~-~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
-.+.|.+++||| ....+++|+-||+|++|+++. |..+ +....|.+||.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 357899999999 556666888999999999976 3433 3445799999999999999999999999999999999985
Q ss_pred eEEEEecCCCCEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
+..+..|.++|.++.|-+... .|++||.|++|+.||.++.+++.++. ....+.++..- ..+++++..++.|.+|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEE
Confidence 556677999999999987665 89999999999999999999988887 35667766553 4588999999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeee
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (916)
++++...... .....-.-.+.|++..++....+.|+-+|.+.|..+..+....-.
T Consensus 182 nL~n~~te~k-------------------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 182 NLENPPTEFK-------------------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred EcCCCcchhh-------------------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 9977432211 111123345788999999888899999999999998886333345
Q ss_pred eeecCCC---------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 243 TLRGHMN---------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 243 ~~~~~~~---------~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
+++.|.. .|.+++|+|....|++++.||++.+||-..+..+.+...+..+|.+.+|+.+|.++|.+.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 5666652 478899999999999999999999999999999999999999999999999999998653
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-27 Score=220.08 Aligned_cols=268 Identities=18% Similarity=0.327 Sum_probs=217.8
Q ss_pred EEEEEeC-CCCEEEEEe-------cCCeEEEEECCCCceEEEec--ccccCEEEEEEecCC-CEEEEEECCCeEEEEECC
Q 002490 13 KGLSFHS-KRPWILASL-------HSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 13 ~~l~~sp-~~~~la~~~-------~dg~I~lwd~~~~~~~~~~~--~h~~~V~~i~fsp~~-~~l~s~~~dg~I~vWd~~ 81 (916)
.++.||| -.++||++. -+|.+.|-++..++-+..+. .-...+..++|+++. ..+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 234455442 36899999986554444432 246678999999854 578889999999999965
Q ss_pred -CCeeEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecC-CCEEEEEECCCe
Q 002490 82 -MHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQT 158 (916)
Q Consensus 82 -~~~~~~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~ 158 (916)
...++..++.|...|.++.|++-. ..++++|.|++|++|+..-++.+.++.+|+..|...+|+|. .+.++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 346788889999999999999854 46778899999999999999999999999999999999995 579999999999
Q ss_pred EEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcC-CCCEEEEEECCCcEEEEECCCCc
Q 002490 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 159 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
+++||++...+. ..++.|...+.++.|+. +.+.+++|+.|+.|+.||++.-+
T Consensus 172 l~lwdvr~~gk~---------------------------~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 172 LRLWDVRSPGKF---------------------------MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred EEEEEecCCCce---------------------------eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 999998874322 24778999999999997 45688999999999999999877
Q ss_pred ceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEecC-CCeEEEE
Q 002490 238 AWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPE-MNLLAAG 308 (916)
Q Consensus 238 ~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~-~~~la~g 308 (916)
. ++..+.+|.-.|..+.|||. ..+|++++.|-++|+||...+ ..+.+...|..-+..+.|++- ..++|..
T Consensus 225 ~-pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 225 T-PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred c-cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 4 58888999999999999995 468999999999999998844 445566667777888888874 4455543
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=226.14 Aligned_cols=291 Identities=20% Similarity=0.377 Sum_probs=230.3
Q ss_pred EEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC-----------------C-eeEEEEecCCCCEEEEEEcCCCC
Q 002490 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-----------------H-RCLFTLLGHLDYIRTVQFHHEYP 106 (916)
Q Consensus 45 ~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~-----------------~-~~~~~l~~h~~~v~~v~fs~~~~ 106 (916)
..+..|++++++.+|+|||.++++|+.|..|+|.|++. + -.++++..|.+.|.++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34567999999999999999999999999999999861 1 24678888999999999999999
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEE--EeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccc
Q 002490 107 WIVSASDDQTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (916)
Q Consensus 107 ~l~s~s~dg~I~iwd~~~~~~~~~--~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 184 (916)
.|++++.|++|+++|...-...+- ......+|.++.|+|.|.+|++|..-.++++||+++.+.-....
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---------- 255 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---------- 255 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----------
Confidence 999999999999999864332221 12345789999999999999999999999999998855322111
Q ss_pred cccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeee-cCC-CCeEEEEEccCCCE
Q 002490 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR-GHM-NNVSCVMFHAKQDI 262 (916)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~-~~v~~l~~sp~~~~ 262 (916)
.-..|...|+++.+++++++.++++.||.|++||--++++ +.++. .|. ..|.+..|..+|++
T Consensus 256 --------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 256 --------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred --------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeE
Confidence 2346899999999999999999999999999999988887 55543 454 46899999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeeccCC--c---EEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEE--
Q 002490 263 IVSNSEDKSIRVWDVTKRTGVQTFRREHD--R---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-- 335 (916)
Q Consensus 263 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~---i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~-- 335 (916)
+++.+.|..+++|.+.+++++..+.+... + -+...|+... +++++.
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE---------------------------dyVl~pDE 372 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE---------------------------DYVLFPDE 372 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc---------------------------ceEEcccc
Confidence 99999999999999999999998875421 1 0111222222 222222
Q ss_pred eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 336 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
..+.+..||..++......++ +| ++.++.+.-||.+..++.++ +|...++|--
T Consensus 373 as~slcsWdaRtadr~~l~sl---gH---n~a~R~i~HSP~~p~FmTcs--dD~raRFWyr 425 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRVALLSL---GH---NGAVRWIVHSPVEPAFMTCS--DDFRARFWYR 425 (430)
T ss_pred ccCceeeccccchhhhhhccc---CC---CCCceEEEeCCCCCceeeec--ccceeeeeee
Confidence 557788999998877666654 44 44999999999999776655 6789999964
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=225.37 Aligned_cols=297 Identities=25% Similarity=0.449 Sum_probs=244.3
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
++++.+.+|...|..++-...++.+.+++.|.+-+||.+++++|+.++.||.+.|.++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCC----------------------------------CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 122 ------WQS----------------------------------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 122 ------~~~----------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
..+ +.++..+++|...|.+..|...|+.+++++.|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 111 1356678899999999999999999999999999999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceee
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (916)
||+++++. ...+.||+...+.++-+|+.+++++.+.|-+.++||++..- ..+
T Consensus 299 wDVEtge~---------------------------v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-~sV 350 (481)
T KOG0300|consen 299 WDVETGEV---------------------------VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-QSV 350 (481)
T ss_pred eeeccCce---------------------------eccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-cee
Confidence 99998664 44788999999999999999999999999999999999443 357
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecC
Q 002490 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (916)
Q Consensus 242 ~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~ 320 (916)
..+.||...|+++.|..+ ..+++|+.|.+|++||+++.. ++.+++ ...++..++.+..+.++|.-+|
T Consensus 351 ~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhD---------- 418 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHD---------- 418 (481)
T ss_pred eeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccC----------
Confidence 889999999999999865 568999999999999998764 455554 4566777888877777777764
Q ss_pred CcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEE-EEEEcCCCCEEEEEEeeC
Q 002490 321 ERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAV-LICSDVDGGSYELYVIPK 398 (916)
Q Consensus 321 ~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l-lv~~~~~~g~i~i~~~~~ 398 (916)
+++|++||+...+...+-...+.+|.. .+.|.+|..+-... +++++ -|..+.-|.+..
T Consensus 419 ----------------NRqvRlfDlnG~RlaRlPrtsRqgHrR---MV~c~AW~eehp~cnLftcG-FDR~v~gW~in~ 477 (481)
T KOG0300|consen 419 ----------------NRQVRLFDLNGNRLARLPRTSRQGHRR---MVTCCAWLEEHPACNLFTCG-FDRMVAGWKINT 477 (481)
T ss_pred ----------------CceEEEEecCCCccccCCcccccccce---eeeeeeccccCccccccccc-ccceeeeeEecc
Confidence 588999999876554443334455544 88999998543211 22333 446777787753
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=231.55 Aligned_cols=275 Identities=18% Similarity=0.270 Sum_probs=239.3
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
..++++...|..+.+++|+.|..+.++|..+++.+..|++|...|+.+.|+|+...+++++.|..|+||......+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 56888888888889999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC--CCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~ 167 (916)
..|..+|+.+..+|.|.||++++.|++..+.|++++.++..... ..-.+++++|||||..+.+|+.|+.|++||+.+.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998887764 2345899999999999999999999999999885
Q ss_pred cceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecC
Q 002490 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247 (916)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 247 (916)
.... .+.+|.++|..++|+.+|-+|+++++|+.|++||++..+......+...
T Consensus 380 ~~~a---------------------------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 380 TNVA---------------------------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred cccc---------------------------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc
Confidence 5332 5667999999999999999999999999999999998886433333322
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeEEeeccCCcEEEEEEecCCCeEEEEeCCC
Q 002490 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT--KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 248 ~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
..+.++.|.+.|.+|+.++.+=.|++++-. +.+.+..+..+.+....+.|.....++++++.+.
T Consensus 433 -~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 433 -KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred -ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 378999999999999999877666666532 4566777777777888999998888988887443
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=221.76 Aligned_cols=243 Identities=19% Similarity=0.337 Sum_probs=207.5
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC--EEEEEECCCeEEEEEC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWNY 80 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~--~l~s~~~dg~I~vWd~ 80 (916)
-.|+.|.++|+++|.+ ++|+|+|+.|-+|+|||+++...+..+-.|.+.|+++.|.+... .|++|++||.|.+|+.
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 3578999999999997 99999999999999999999999999999999999999998765 8999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
....++.++++|.+.|+.++.||.+++-++.+.|+.++.||+-.|+.-..++- ...-+.+.|+|.|.+++.++.++ |-
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~ 192 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-ID 192 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EE
Confidence 99999999999999999999999999999999999999999998877665542 23345599999999998888664 88
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCccee
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
+|.+.+....... .....+.++.|.. +..|++|.+|+.|++||..+..+
T Consensus 193 i~q~d~A~v~~~i----------------------------~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~-- 241 (362)
T KOG0294|consen 193 IYQLDNASVFREI----------------------------ENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTP-- 241 (362)
T ss_pred EEecccHhHhhhh----------------------------hccccceeeeecC-CceEEEecCCceEEEeccCCCcc--
Confidence 9988764322110 1123456666654 46789999999999999998765
Q ss_pred eeeeecCCCCeEEEEE--ccCCCEEEEEeCCCcEEEEECCCC
Q 002490 241 VDTLRGHMNNVSCVMF--HAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 241 ~~~~~~~~~~v~~l~~--sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
...+.+|.+.|-.+.+ .|++.+|+++|.||.|+|||+...
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8888999999999884 467889999999999999999865
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-27 Score=250.97 Aligned_cols=258 Identities=19% Similarity=0.375 Sum_probs=221.0
Q ss_pred EEEEe-CCCCEEEEEecCCeEEEEECCCCc------eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC--e
Q 002490 14 GLSFH-SKRPWILASLHSGVIQLWDYRMGT------LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--R 84 (916)
Q Consensus 14 ~l~~s-p~~~~la~~~~dg~I~lwd~~~~~------~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~--~ 84 (916)
.+..+ |.+++|.+|+.||.|++|++.... .+.+++.|..-|+.+....+++.|+++|.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 356789999999999999985432 36778899999999999999999999999999999999876 6
Q ss_pred eEEEEecCCCCEEEEEE-cCCCCEEEEEECCCcEEEEeCCCCeE--E--------EEEe-CCCCceEEEEEecCCCEEEE
Q 002490 85 CLFTLLGHLDYIRTVQF-HHEYPWIVSASDDQTIRIWNWQSRTC--I--------SVLT-GHNHYVMCASFHPKEDLVVS 152 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~f-s~~~~~l~s~s~dg~I~iwd~~~~~~--~--------~~~~-~h~~~v~~l~~~p~~~~l~s 152 (916)
|..++..|.++|.|++. -++...+|+|+-|+.|.+||+.++.. + ..+. ++...|.+++.++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 88889999999999999 78888999999999999999997732 2 2233 78889999999999999999
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd 232 (916)
|+..+.+++||.++.++. ..+.||...|..+..+++|..++++++||+|++||
T Consensus 189 Ggtek~lr~wDprt~~ki---------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKI---------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cCcccceEEeccccccce---------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 999999999999986653 35679999999999999999999999999999999
Q ss_pred CCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
+...++ +.++..|...|+++..+|+-..+++|+.||.|..=|+++......+-....++..+..+.
T Consensus 242 LgqQrC--l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~ 307 (735)
T KOG0308|consen 242 LGQQRC--LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE 307 (735)
T ss_pred ccccce--eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc
Confidence 999887 889999999999999999999999999999999999988544333333445555555553
No 101
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.9e-26 Score=251.50 Aligned_cols=230 Identities=15% Similarity=0.262 Sum_probs=191.3
Q ss_pred cccccCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-------ceEEEecccccCEEEEEEecCC-CEEEEEECCCe
Q 002490 4 KFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYK 74 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~~-------~~~~~~~~h~~~V~~i~fsp~~-~~l~s~~~dg~ 74 (916)
.|.+|++.|++++|+| ++.+|++|+.||+|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 3567889999999999999985 69999999999
Q ss_pred EEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCc-eEEEEEecCCCEEEEE
Q 002490 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (916)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~s~ 153 (916)
|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 4567899988887765
Q ss_pred E----CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE-CCCcE
Q 002490 154 S----LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQV 228 (916)
Q Consensus 154 s----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v 228 (916)
+ .|++|++||++...... ......+...+....|+++++++++++ .|+.|
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~-------------------------~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPY-------------------------STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCce-------------------------eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 4 47899999998644211 001112334566678999999998887 59999
Q ss_pred EEEECCCCcceeeeeee-cCCCCeEEEEEccCC
Q 002490 229 KLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQ 260 (916)
Q Consensus 229 ~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~ 260 (916)
++||+.+++. +.... .+..++..++|.|..
T Consensus 285 riwdl~~~~~--~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 285 RCFELMNERL--TFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEeeCCce--EEEeeccCCCCCcceEecccc
Confidence 9999998875 33332 244567788888854
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-27 Score=256.05 Aligned_cols=237 Identities=21% Similarity=0.405 Sum_probs=193.6
Q ss_pred eEEEec-ccccCEEEEEEecCCCEEEEEECCCeEEEEECCC--------------------------------C------
Q 002490 43 LIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--------------------------------H------ 83 (916)
Q Consensus 43 ~~~~~~-~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~--------------------------------~------ 83 (916)
..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345556 8999999999999999999999999999998754 0
Q ss_pred ----------------------eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEE
Q 002490 84 ----------------------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (916)
Q Consensus 84 ----------------------~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l 141 (916)
+++..+.||.+.|..+.||.++ +|+++|.|.||++|++...+|+.++. |+..|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 1223456899999999999876 89999999999999999999999997 99999999
Q ss_pred EEec-CCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEE
Q 002490 142 SFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (916)
Q Consensus 142 ~~~p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 220 (916)
+|+| |.+++++|+.|+.||+|++...+... ...-..-|++++|.|+|+..+
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----------------------------W~Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVD----------------------------WNDLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEe----------------------------ehhhhhhheeEEeccCCceEE
Confidence 9999 56799999999999999997744321 222337799999999999999
Q ss_pred EEECCCcEEEEECCCCcceeeeeeecC------CCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEeeccCC--
Q 002490 221 SGADDRQVKLWRMNETKAWEVDTLRGH------MNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-- 291 (916)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~v~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-- 291 (916)
+|+.+|..++|+....+...-..+..| ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..|++...
T Consensus 468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 999999999999988775322222222 2279999999844 4588888999999999988888888876543
Q ss_pred cEEEEEEecCCCeEEEEe
Q 002490 292 RFWILASHPEMNLLAAGH 309 (916)
Q Consensus 292 ~i~~l~~sp~~~~la~g~ 309 (916)
.-....|+.+|++|++++
T Consensus 548 SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSAS 565 (712)
T ss_pred cceeeeEccCCCEEEEee
Confidence 234567788999988887
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=246.38 Aligned_cols=261 Identities=20% Similarity=0.348 Sum_probs=227.3
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec-CC
Q 002490 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HL 93 (916)
Q Consensus 15 l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~-h~ 93 (916)
+.|+ ..+.||+|. ...|++|+..++......+.+...|+++.|+++|.+|++|..+|.|.|||..+.+.+.++.+ |.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 5677 455788874 45799999999987776666689999999999999999999999999999999999999998 99
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-EeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceec
Q 002490 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172 (916)
Q Consensus 94 ~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~ 172 (916)
..|-+++|+ +..+.+|+.++.|.++|++..+.... +.+|...|..+.|++++.++++|+.|+.+.|||.....
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---- 334 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---- 334 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc----
Confidence 999999999 55799999999999999998776555 88999999999999999999999999999999995433
Q ss_pred cCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcC-CCCEEEEEE--CCCcEEEEECCCCcceeeeeeecCCC
Q 002490 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGA--DDRQVKLWRMNETKAWEVDTLRGHMN 249 (916)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~ 249 (916)
+++.+..|...|.+++|+| ...+||+|+ .|++|++||..++.. +.. .....
T Consensus 335 -----------------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--i~~-vdtgs 388 (484)
T KOG0305|consen 335 -----------------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--IDS-VDTGS 388 (484)
T ss_pred -----------------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--ecc-cccCC
Confidence 3457888999999999999 456788875 699999999999885 443 34567
Q ss_pred CeEEEEEccCCCEEEEE--eCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 250 NVSCVMFHAKQDIIVSN--SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 250 ~v~~l~~sp~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
.|.++.|++..+-|+++ ..++.|.||+..+.+.+..+.+|..+|..++++|+|..+++|.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec
Confidence 89999999988766664 4567899999999999999999999999999999999999887
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=203.83 Aligned_cols=283 Identities=19% Similarity=0.315 Sum_probs=225.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC------C---------ceEEEecccccCEEEEEEecCCCEEEEEECC
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------G---------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD 72 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~------~---------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d 72 (916)
.+..|.+++|||.|.+.|+|+.+.+.+|--+.. + ...++-+.|.+.|.|.+|+|+|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 357899999999999999999999999876532 1 1123335699999999999999999999999
Q ss_pred CeEEEEECCCCeeE-----EEEecCCCCEEEEEEcCC----CCEEEEEE-CCCcEEEEeCCCCeEEEEEeCCCCceEEEE
Q 002490 73 YKIKVWNYKMHRCL-----FTLLGHLDYIRTVQFHHE----YPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (916)
Q Consensus 73 g~I~vWd~~~~~~~-----~~l~~h~~~v~~v~fs~~----~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~ 142 (916)
.+|++.-++...+. ..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...|+....+.+|.+-|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 99999877644332 356679999999999754 34666654 47788899999999999999999999876
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec---cCCCeeEEEEcCCCCEE
Q 002490 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG---HDRGVNWAAFHPTLPLI 219 (916)
Q Consensus 143 ~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l 219 (916)
++.++-.+++|+.|.+|++||++-......... .+.+ ....|.+++..|.|++|
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----------------------~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----------------------DFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccC-----------------------cccCCCcccceeEEEEECCCccee
Confidence 455788999999999999999986543322110 0111 23568899999999999
Q ss_pred EEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEeeccCCcEEE
Q 002490 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDRFWI 295 (916)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~ 295 (916)
++|..|....+||++.++. +..+..|...|.|+.|+|...++++++.|..|++-|+... -++.....|.+.+..
T Consensus 247 ~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~ 324 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ 324 (350)
T ss_pred eeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence 9999999999999999997 8999999999999999999999999999999999998632 233445567888889
Q ss_pred EEEecCCCeEEEEe-CCCceEE
Q 002490 296 LASHPEMNLLAAGH-DSGMIVF 316 (916)
Q Consensus 296 l~~sp~~~~la~g~-~~~~~v~ 316 (916)
+.|+|..-.+.+.+ |....+|
T Consensus 325 ~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred EEecCccceeeeccCcceEEEe
Confidence 99999776655544 4333344
No 105
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=249.15 Aligned_cols=247 Identities=15% Similarity=0.222 Sum_probs=194.2
Q ss_pred EecCCeEEEEECCCCceEEEecccccCEEEEEEecC-CCEEEEEECCCeEEEEECCCCe--------eEEEEecCCCCEE
Q 002490 27 SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHR--------CLFTLLGHLDYIR 97 (916)
Q Consensus 27 ~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~vWd~~~~~--------~~~~l~~h~~~v~ 97 (916)
|+..+.|.+|+......+..+.+|.++|.+++|+|+ +.+|+||+.|++|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 456788999998777888899999999999999997 7899999999999999997542 3456789999999
Q ss_pred EEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCc
Q 002490 98 TVQFHHEYPW-IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (916)
Q Consensus 98 ~v~fs~~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 176 (916)
+++|+|++.. +++++.|++|+|||+.+++.+..+. |...|.+++|+|+|++|++++.|++|++||+++++..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i------ 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA------ 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE------
Confidence 9999999875 5789999999999999998877776 6678999999999999999999999999999875432
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeeE-----EEEcCCCCEEEEEECCC----cEEEEECCC-Ccceeeeeeec
Q 002490 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW-----AAFHPTLPLIVSGADDR----QVKLWRMNE-TKAWEVDTLRG 246 (916)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~p~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~~~ 246 (916)
..+.+|.+.+.. ..|++++.+|++++.++ +|++||++. .+......+..
T Consensus 203 ---------------------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 203 ---------------------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred ---------------------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 356677765433 34568889999988764 799999985 34322223333
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee--ccCCcEEEEEEecCC
Q 002490 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--REHDRFWILASHPEM 302 (916)
Q Consensus 247 ~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~~ 302 (916)
+.+.+......+++.++++|+.|++|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 444444444556789999999999999999987642 2222 134567788888854
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=232.25 Aligned_cols=251 Identities=18% Similarity=0.315 Sum_probs=223.3
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
|+..|+||+..|+.+.|||+...+++++.|-.|+||.............|+++|+.+..+|+|.||++++.|++..+.|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 57789999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred CCCeeEEEEecC--CCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCe
Q 002490 81 KMHRCLFTLLGH--LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (916)
Q Consensus 81 ~~~~~~~~l~~h--~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 158 (916)
++++++...... .-.+++.+|||||..|.+|+.|+.|+|||+.++..+..+.+|.++|..++|+.+|-+|++++.|+.
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 999988776532 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 159 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
|++||++..+.... .......++.++.|.+.|.+|+.++.+=+|++++-.+...
T Consensus 413 V~lwDLRKl~n~kt--------------------------~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKT--------------------------IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEEEehhhcccce--------------------------eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 99999998664321 2222334799999999999999998888888888666655
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 002490 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 239 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~ 277 (916)
.++..+..|.+..+++.|....+++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 567778889999999999999999999999999888754
No 107
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=257.07 Aligned_cols=248 Identities=30% Similarity=0.532 Sum_probs=221.4
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~ 81 (916)
+..|.||.+.|.+++|..-+.+|++|+.|.++++||+.+|.+...+.+|.+.|+++... ..++++|+.|.+|+||+++
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 34599999999999998878899999999999999999999999999999999998874 4478999999999999999
Q ss_pred CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 82 ~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
++.++.++.+|.++|+++..+ ++++++|+.|++|++||+.+++++.++++|.+.|.++.+.+. +.+++|+.|++|++
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKV 396 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEe
Confidence 999999999999999999998 679999999999999999999999999999999999988754 89999999999999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceee
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (916)
||+++.++ +...+.+|..-+..+.+ .++.|++++.|++|++||..++.+ +
T Consensus 397 Wdl~~~~~--------------------------c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~--~ 446 (537)
T KOG0274|consen 397 WDLRTKRK--------------------------CIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGEC--L 446 (537)
T ss_pred ecCCchhh--------------------------hhhhhcCCccccccccc--ccceeEeccccccEEEeecccCce--e
Confidence 99998731 33467778777755544 457899999999999999999997 7
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 002490 242 DTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (916)
Q Consensus 242 ~~~~~-~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 286 (916)
.++.+ |...|+++++. ...+++++.||++.+||+++++..+.+
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 77777 67888888876 567899999999999999999888766
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=245.52 Aligned_cols=282 Identities=22% Similarity=0.423 Sum_probs=245.5
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEecccccCEEE-EEEec-CCCEEEEEECCCeEEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRG-VHFHK-SQPLFVSGGDDYKIKV 77 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~--~~~~~h~~~V~~-i~fsp-~~~~l~s~~~dg~I~v 77 (916)
-+.++||+..|+.+++.+.. ++++++.||++++|+-..++.+ ..+.+|.+-|.+ +++-+ ++-++++|+.|.+|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 35789999999999987654 8999999999999996555443 456778888877 88876 4456999999999999
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
|...+..++.++.+|...|.++....++. +++||.|.++++|.. +++...+.+|+..|.++...|++ .++|||.|.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 99999999999999999999999888886 999999999999974 66777899999999999999987 899999999
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
+|++|.-.+ ....+.+|...|..+++-|++. |++++.||.|++|++....
T Consensus 162 tIklWk~~~-----------------------------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~ 211 (745)
T KOG0301|consen 162 TIKLWKGGT-----------------------------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEV 211 (745)
T ss_pred eeeeccCCc-----------------------------hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCce
Confidence 999998644 3347889999999999999864 8899999999999995444
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEE
Q 002490 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (916)
Q Consensus 238 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~ 317 (916)
+....+|.+-|.++...+++..++++++|+++++|+.. .+.+.+..+...+|++.+-++|.+++.|+|+.+++|.
T Consensus 212 ---l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 212 ---LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred ---eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 88899999999999988888999999999999999865 8889998888899999999999999998888888887
Q ss_pred ecCCcc
Q 002490 318 LERERP 323 (916)
Q Consensus 318 ~~~~~~ 323 (916)
....|.
T Consensus 287 ~~k~R~ 292 (745)
T KOG0301|consen 287 VDKDRK 292 (745)
T ss_pred eccccc
Confidence 765554
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.2e-28 Score=234.72 Aligned_cols=275 Identities=20% Similarity=0.367 Sum_probs=232.5
Q ss_pred cccccccCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 2 LTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~-~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
+..|.||.+.|.|++=||.. ..+++|+.||.|+|||+.+..++.+|+.|.+.|++|+++. ..++++|+|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45689999999999999987 7899999999999999999999999999999999999977 67999999999999998
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEEEECCCeE
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTV 159 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v 159 (916)
.. ..+.++.+ ...+..+.-+..+..++||+. .|.|||.+-..++..+.--...|.++.|+|... .|+++..|+.|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 74 57777764 445677777777788898875 599999998899999987778899999999765 77788899999
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
.+||++....... ..+ .-.-+.++|+|.+-.+++|+.|..++.||++.-..
T Consensus 213 vLyD~R~~~Pl~K-------------------------Vi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~- 263 (433)
T KOG0268|consen 213 VLYDLRQASPLKK-------------------------VIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR- 263 (433)
T ss_pred EEEecccCCccce-------------------------eee---eccccceecCccccceeeccccccceehhhhhhcc-
Confidence 9999988654321 111 23346789999888899999999999999987664
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec-cCCcEEEEEEecCCCeEEEEeCC
Q 002490 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDS 311 (916)
Q Consensus 240 ~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~~~ 311 (916)
++....+|.+.|.++.|||.|+-+++||.|.+|+||..+.+..-..+.. .-..|.++.||.|.+++.+|+|+
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence 4777889999999999999999999999999999999987765443322 22468999999999999999954
No 110
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=236.25 Aligned_cols=240 Identities=23% Similarity=0.376 Sum_probs=209.2
Q ss_pred ccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCC-CEEEEEECCCeEEEEECCCC
Q 002490 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 5 l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~-~~l~s~~~dg~I~vWd~~~~ 83 (916)
|..-..-|.+++|-.||++||+|...|.|+|+|+++...++.+.+|+.||..+.|+|++ ..|++|++|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 44445789999999999999999999999999988878889999999999999999954 57889999999999999998
Q ss_pred eeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 84 RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
.....+.+|+++|+|.+|+|... .++||+.||+|++||.++. ..+..+. |..+|.++.+.|.|..+++++ ...|++
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 88778999999999999999755 8999999999999999977 5566665 999999999999999999998 457999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceee
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (916)
||+.++.+.. .....|...|+|+.+..++..|++|+-||.|++||..+-+. +
T Consensus 222 WDl~~G~qll--------------------------~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--v 273 (487)
T KOG0310|consen 222 WDLTTGGQLL--------------------------TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--V 273 (487)
T ss_pred EEecCCceeh--------------------------hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE--E
Confidence 9998655432 23344999999999999999999999999999999877774 4
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002490 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (916)
Q Consensus 242 ~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vw 275 (916)
..+. ..++|.+++.+|+++.++.|-.+|.+.+-
T Consensus 274 ~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 274 HSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred Eeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 4443 56899999999999999999999987665
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=222.14 Aligned_cols=280 Identities=18% Similarity=0.367 Sum_probs=227.8
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC------------C------ceEEEecccccCEEEEEEecCCCE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------------G------TLIDRFDEHDGPVRGVHFHKSQPL 65 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~------------~------~~~~~~~~h~~~V~~i~fsp~~~~ 65 (916)
.+..|.+++.+-+|||||.++|+|+.|..|+|.|++. | -.++++-.|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4667999999999999999999999999999999861 1 356788899999999999999999
Q ss_pred EEEEECCCeEEEEECCCCee--EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE---eCCCCceEE
Q 002490 66 FVSGGDDYKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMC 140 (916)
Q Consensus 66 l~s~~~dg~I~vWd~~~~~~--~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~h~~~v~~ 140 (916)
|++|+.|++|+++|+..-.. -+.......+|+++.|+|.|.+|+.|.+-.++++||+.+-+|...- .+|.+.|++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ 266 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence 99999999999999974322 1222235678999999999999999999999999999999887654 478999999
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC-CCeeEEEEcCCCCEE
Q 002490 141 ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLI 219 (916)
Q Consensus 141 l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l 219 (916)
+.+++.+++.+++|.||.|++||--+.+.... .-..|. ..|.++.|..+++++
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t--------------------------~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT--------------------------IGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred EEecCCccEEEEeccCCcEEeeccccHHHHHH--------------------------HHhhcCCceeeeEEEccCCeEE
Confidence 99999999999999999999999766554332 223454 468999999999999
Q ss_pred EEEECCCcEEEEECCCCcceeeeeeecC--CC---CeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEe-eccCCc
Q 002490 220 VSGADDRQVKLWRMNETKAWEVDTLRGH--MN---NVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTF-RREHDR 292 (916)
Q Consensus 220 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~---~v~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~-~~~~~~ 292 (916)
++.+.|..+++|.+.+++. +....|- .+ --+...|+....+++.-.+ .+.+.-||.++...+..+ .+|++.
T Consensus 321 LsSG~DS~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a 398 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA 398 (430)
T ss_pred eecCCcceeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC
Confidence 9999999999999999997 4444332 22 1234567766777766543 467999999887655444 368889
Q ss_pred EEEEEEecCCCeEEEEeCC
Q 002490 293 FWILASHPEMNLLAAGHDS 311 (916)
Q Consensus 293 i~~l~~sp~~~~la~g~~~ 311 (916)
+..+.-||.+..+.+++++
T Consensus 399 ~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred ceEEEeCCCCCceeeeccc
Confidence 9999999999988888754
No 112
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.8e-25 Score=247.12 Aligned_cols=232 Identities=11% Similarity=0.188 Sum_probs=186.5
Q ss_pred ccccccCCCEEEEEEeCC-CCEEEEEecCCeEEEEECCCCc--------eEEEecccccCEEEEEEecCCCE-EEEEECC
Q 002490 3 TKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVHFHKSQPL-FVSGGDD 72 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~-~~~la~~~~dg~I~lwd~~~~~--------~~~~~~~h~~~V~~i~fsp~~~~-l~s~~~d 72 (916)
..|.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 568899999999999997 7899999999999999997642 34567899999999999998875 5789999
Q ss_pred CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEE-----EEecCC
Q 002490 73 YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-----SFHPKE 147 (916)
Q Consensus 73 g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l-----~~~p~~ 147 (916)
++|+|||+.+++.+..+. |...|.+++|+|+|.+|++++.|++|+|||+++++.+..+.+|.+.+.+. .|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999998887776 66889999999999999999999999999999999999999998765433 345888
Q ss_pred CEEEEEECCC----eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE
Q 002490 148 DLVVSASLDQ----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (916)
Q Consensus 148 ~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 223 (916)
.+|++++.|+ +|++||++...... ....+..+.+.+......+++.++++|+
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl------------------------~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSAL------------------------VTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCce------------------------EEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 8999988774 79999998633211 1122333444444445566788999999
Q ss_pred CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCC
Q 002490 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 260 (916)
.|+.|++|++..+....+.... +..++.+++|.|+.
T Consensus 283 GD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 283 GDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 9999999999877543333333 56778889999965
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.9e-26 Score=252.66 Aligned_cols=298 Identities=21% Similarity=0.346 Sum_probs=236.1
Q ss_pred cccCEEEEEEecCCCEEEEEE--CCCeEEEEECCC------------CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Q 002490 50 HDGPVRGVHFHKSQPLFVSGG--DDYKIKVWNYKM------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (916)
Q Consensus 50 h~~~V~~i~fsp~~~~l~s~~--~dg~I~vWd~~~------------~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg 115 (916)
++..|.+|+.||++..++||| .|+.++||+.+. .+.+.++..|.+.|.|+.|++||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455689999999999999999 899999998752 244567788999999999999999999999999
Q ss_pred cEEEEeCCC------------------CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCcc
Q 002490 116 TIRIWNWQS------------------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177 (916)
Q Consensus 116 ~I~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 177 (916)
.|.||.... .+++..+.+|...|..++|+|++.++++++.|++|.+|+..+.+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-------- 163 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-------- 163 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--------
Confidence 999998762 246788899999999999999999999999999999999988642
Q ss_pred ceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecC------CCCe
Q 002490 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH------MNNV 251 (916)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~v 251 (916)
..++.+|.+.|..+.|.|-|++|++-++|++|++|+..+... ...+.++ ...+
T Consensus 164 -------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 164 -------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFF 222 (942)
T ss_pred -------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCccee
Confidence 347899999999999999999999999999999999776443 3333332 2347
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEECCCCceeEEeeccCCcEEEEEEecC---CCeEEEEeCCCceEEEecCCcce
Q 002490 252 SCVMFHAKQDIIVSNS----EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE---MNLLAAGHDSGMIVFKLERERPA 324 (916)
Q Consensus 252 ~~l~~sp~~~~l~s~~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~~la~g~~~~~~v~~~~~~~~~ 324 (916)
..+.|||||.+|++.- .-.++.|.+-.+.+.-..+-+|..++.++.|+|. .+.- +|.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-----ng~----------- 286 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-----NGT----------- 286 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-----cCC-----------
Confidence 7899999999999863 2346888888888888889999999999999983 1100 000
Q ss_pred EEecCC----EEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 325 FAVSGD----SLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 325 ~s~~~~----~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
+..++ .++++ .|+++.+|.....+ |++....... ..|..++|+|||..|++++ .||+|.+..+...
T Consensus 287 -~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~----~SI~DmsWspdG~~LfacS--~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 287 -STQPNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFN----KSIVDMSWSPDGFSLFACS--LDGTVALIHFEEK 357 (942)
T ss_pred -ccCCCcceEEEEEecCCccEEEEecCCCC--chhhhhhhhc----CceeeeeEcCCCCeEEEEe--cCCeEEEEEcchH
Confidence 00011 22333 89999999985544 4444443222 2899999999999988887 4689999998755
Q ss_pred CC
Q 002490 400 SI 401 (916)
Q Consensus 400 ~~ 401 (916)
..
T Consensus 358 El 359 (942)
T KOG0973|consen 358 EL 359 (942)
T ss_pred Hh
Confidence 44
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=234.47 Aligned_cols=287 Identities=25% Similarity=0.417 Sum_probs=241.5
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe--eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~--~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~i 119 (916)
+....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.|..+.|+.+.|.+++..+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 4455677899999999999998999999999999999998766 67788899999999999999999999999999999
Q ss_pred EeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEE
Q 002490 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (916)
Q Consensus 120 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (916)
|++.+.+...++.+|...|+++.|......+++|+.|.+|+.||+........ .
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt--------------------------~ 299 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT--------------------------V 299 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc--------------------------c
Confidence 99999999999999999999999987777799999999999999987443221 1
Q ss_pred EeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 200 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
+ ....++.++.+ ...+++|..|+.|++||.++... ......+ +.|+++..++++..+.+++.|.++.+.|+++
T Consensus 300 l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~--~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 300 L--PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK--TRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred c--ccccccceEec--ceeeeecccccceEEEeccCCce--eeEeecC-cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 1 11234444444 45688999999999999999886 6666665 4999999999999999999999999999999
Q ss_pred CceeEEeeccC----CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 280 RTGVQTFRREH----DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 280 ~~~~~~~~~~~----~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
....+++.... ...+.+.|||++.++++|+ .|+.|++|++.+++....+.
T Consensus 373 ~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS--------------------------~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 373 KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS--------------------------ADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred ccEEEEeeccccccccccceeEECCCCceeeecc--------------------------CCCcEEEEEccCceEEEEec
Confidence 98888876543 3467899999999999998 56889999999999877776
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEE
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY 394 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~ 394 (916)
...... .|++++|+|.|..++.++. ++.+.+|
T Consensus 427 ~s~s~~-----aI~s~~W~~sG~~Llsadk--~~~v~lW 458 (459)
T KOG0288|consen 427 LSTSNA-----AITSLSWNPSGSGLLSADK--QKAVTLW 458 (459)
T ss_pred cCCCCc-----ceEEEEEcCCCchhhcccC--CcceEec
Confidence 554221 7999999999999876653 5677777
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2e-25 Score=225.61 Aligned_cols=281 Identities=23% Similarity=0.352 Sum_probs=236.4
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEE----E-------------E-ecCCCCEEEEEEcCCC
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----T-------------L-LGHLDYIRTVQFHHEY 105 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~----~-------------l-~~h~~~v~~v~fs~~~ 105 (916)
...+..|.-+|.+++++|+..+..+++.+++|.-|++.+++... + - .+|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 55667899999999999999999999999999999998876431 1 1 2688899999999999
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeecccc
Q 002490 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (916)
Q Consensus 106 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 185 (916)
+||++|+.|..|.||+.++.+.+..+++|.+.|.+++|-...+.+++++.|++|++|++......
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v--------------- 279 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV--------------- 279 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH---------------
Confidence 99999999999999999999999999999999999999988889999999999999999775432
Q ss_pred ccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEE
Q 002490 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (916)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 265 (916)
..+.+|...|..+....-++.+-+|+.|+++++|++.... ...+++|.+.+.|++|- +...+++
T Consensus 280 ------------etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I-n~~Hfvs 343 (479)
T KOG0299|consen 280 ------------ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI-NDEHFVS 343 (479)
T ss_pred ------------HHHhCCccceeeechhcccceEEeccccceeEEEeccccc---eeeeeCCCCCeeeEEEe-cccceee
Confidence 2567899999999998888888888899999999996655 45678899999999997 5578999
Q ss_pred EeCCCcEEEEECCCCceeEEeeccC------------CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEE
Q 002490 266 NSEDKSIRVWDVTKRTGVQTFRREH------------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (916)
Q Consensus 266 ~~~dg~i~vwd~~~~~~~~~~~~~~------------~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~ 333 (916)
|+.+|.|.+|++.+.+++.+.+..+ ..|++++..|...++|+|+
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS------------------------ 399 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS------------------------ 399 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC------------------------
Confidence 9999999999999999888765322 2678899999999999988
Q ss_pred EEeCCeEEEEEccCC--ceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCC
Q 002490 334 YAKDRFLRYYEFSTQ--KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD 387 (916)
Q Consensus 334 ~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~ 387 (916)
.++.|++|-+..+ ...++.+++- .+.|.+++|+++|+.+++..+.+
T Consensus 400 --~~G~vrLW~i~~g~r~i~~l~~ls~------~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 400 --WSGCVRLWKIEDGLRAINLLYSLSL------VGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred --CCCceEEEEecCCccccceeeeccc------ccEEEEEEEccCCCEEEEecccc
Confidence 4567888888776 2222333321 33899999999999888877644
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.9e-25 Score=211.63 Aligned_cols=271 Identities=18% Similarity=0.300 Sum_probs=224.6
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
...|+.+.|+|.+..|++++-||++++||+....+...++ |..|+.+++|.++. .+++|+-||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee-
Confidence 5789999999999999999999999999998887766674 99999999998854 68999999999999999876554
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 002490 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~ 168 (916)
+..|...|+|+.+++....+++|+.|++|++||.+.......+.. ...|.|+... ++.|++|+.+..|.+||+++..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 556999999999999888999999999999999987666666553 3478887765 7899999999999999999866
Q ss_pred ceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc--eeeeeeec
Q 002490 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTLRG 246 (916)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~ 246 (916)
..... .-..-.-.+.++++-|++.-+++++-||.|.+=.++.... .....++.
T Consensus 167 ~~~q~-------------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 167 EPFQR-------------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred chhhh-------------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 43311 1112334678999999888899999999998866655411 11334444
Q ss_pred CC---------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeC
Q 002490 247 HM---------NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (916)
Q Consensus 247 ~~---------~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~ 310 (916)
|. .+|.+++|||-...++||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 43 36899999999999999999999999999999999999888888999999999999999874
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-25 Score=236.36 Aligned_cols=281 Identities=19% Similarity=0.267 Sum_probs=238.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCc
Q 002490 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (916)
Q Consensus 97 ~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 176 (916)
.-+.|+.. +.+++|. ...|++|+-.++........+...|+++.|+++|.+|++|..+|.|.|||....+...
T Consensus 181 nlldWss~-n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----- 253 (484)
T KOG0305|consen 181 NLLDWSSA-NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----- 253 (484)
T ss_pred hHhhcccC-CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-----
Confidence 44677744 3566554 5679999999988666666568899999999999999999999999999998765433
Q ss_pred cceeeccccccccccccceEEEEEec-cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEE
Q 002490 177 DILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255 (916)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~ 255 (916)
.+.+ |...|.+++|. +..+.+|+.++.|..+|++..+.. +.++.+|...|..+.
T Consensus 254 ----------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 254 ----------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLK 308 (484)
T ss_pred ----------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeE
Confidence 3344 89999999999 567999999999999999988763 225889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEec-CCCeEEEEeCCCceEEEecCCcceEEecCCEEEE
Q 002490 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (916)
Q Consensus 256 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp-~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~ 334 (916)
|++++.++++|+.|+.+.|||.....++..+..|...|..++|+| ...+||+|...
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs----------------------- 365 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS----------------------- 365 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC-----------------------
Confidence 999999999999999999999988899999999999999999999 56688887632
Q ss_pred EeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCc
Q 002490 335 AKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGL 414 (916)
Q Consensus 335 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 414 (916)
.|+.|++||..++..+....... .|.+|.|++..+-++++.+...+.+.||+++.... ...+.+|...
T Consensus 366 -~D~~i~fwn~~~g~~i~~vdtgs--------QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~---~~~l~gH~~R 433 (484)
T KOG0305|consen 366 -ADRCIKFWNTNTGARIDSVDTGS--------QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL---VAELLGHTSR 433 (484)
T ss_pred -cccEEEEEEcCCCcEecccccCC--------ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce---eeeecCCcce
Confidence 67999999999988766654322 99999999999888888887777999999977433 2267899999
Q ss_pred eeEEEEEeCCcEEEEEcCCCEEEEEccCCc
Q 002490 415 GGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (916)
Q Consensus 415 i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~ 444 (916)
|..++++|||..+++++.|.++++|++-+.
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999998753
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=227.37 Aligned_cols=300 Identities=20% Similarity=0.327 Sum_probs=225.3
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC----eeEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEE
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----RCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIR 118 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~----~~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~ 118 (916)
.-.+++|...|+++++.|.|.+|+|||-|++|++||+... +..+.+. .....|+++.|++.+..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 3456788999999999999999999999999999999743 2222222 3455799999999999999999889999
Q ss_pred EEeCCCCeEEE------------EEeCCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeecccc
Q 002490 119 IWNWQSRTCIS------------VLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (916)
Q Consensus 119 iwd~~~~~~~~------------~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 185 (916)
++|-...+... ..+||...++|.+|+|..+ .+++++.||++|+||+...+....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q------------- 306 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ------------- 306 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-------------
Confidence 99965433332 2257999999999999765 899999999999999987553221
Q ss_pred ccccccccceEEEE-EeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCccee-eeeeecCCC--CeEEEEEccCCC
Q 002490 186 TDLFGGVDAVVKYV-LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMN--NVSCVMFHAKQD 261 (916)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~--~v~~l~~sp~~~ 261 (916)
+++.. ..+..-+++.++|+|+|++|++|+.||.|.+|+..+....+ ...-..|.. .|+|+.||++|+
T Consensus 307 ---------Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 307 ---------VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred ---------EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 11111 12344578899999999999999999999999975543322 233356766 899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeEEeeccC--CcEEEEEEecCCCeEEEEeC--CCceEEEecCCcceEEecCCEEEEEe
Q 002490 262 IIVSNSEDKSIRVWDVTKRT-GVQTFRREH--DRFWILASHPEMNLLAAGHD--SGMIVFKLERERPAFAVSGDSLFYAK 336 (916)
Q Consensus 262 ~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~--~~i~~l~~sp~~~~la~g~~--~~~~v~~~~~~~~~~s~~~~~l~~~~ 336 (916)
+|++-+.|+++++||++..+ ++....+-. -+-+.++|||+.++|++|+. ++. .
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~----------------------~ 435 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM----------------------T 435 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC----------------------C
Confidence 99999999999999998654 344333322 23467899999999999873 111 3
Q ss_pred CCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 337 DRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 337 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
.+.+.+||..+-+.+..+.+.. . .+..+.|+|.=+.+++.++ + |.+++|--
T Consensus 436 ~g~L~f~d~~t~d~v~ki~i~~----a---Svv~~~WhpkLNQi~~gsg-d-G~~~vyYd 486 (641)
T KOG0772|consen 436 AGTLFFFDRMTLDTVYKIDIST----A---SVVRCLWHPKLNQIFAGSG-D-GTAHVYYD 486 (641)
T ss_pred CceEEEEeccceeeEEEecCCC----c---eEEEEeecchhhheeeecC-C-CceEEEEC
Confidence 4678888887766666555442 2 7888999999888877765 4 66666543
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-24 Score=207.64 Aligned_cols=252 Identities=22% Similarity=0.347 Sum_probs=206.0
Q ss_pred EEEEEecCCeEEEEECCCC------------ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe
Q 002490 23 WILASLHSGVIQLWDYRMG------------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (916)
Q Consensus 23 ~la~~~~dg~I~lwd~~~~------------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~ 90 (916)
.+++|+....|.=+++.-. ..+..+..|.++|++++. +++++|+||.|-+|+|||+.+...+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3566777666665554211 224566789999999998 68899999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCC--EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 002490 91 GHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (916)
Q Consensus 91 ~h~~~v~~v~fs~~~~--~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~ 168 (916)
.|.+.|+++.|.+... .|++|++||.|.+|+..+..++..+++|.+.|+.++.||.+++-++.+.|+.++.||+-.++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998775 89999999999999999999999999999999999999999999999999999999998766
Q ss_pred ceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC
Q 002490 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (916)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (916)
.....+ + ...-..+.|+|.|.+++.+.. ..|-+|.+.+.+. ...+. ..
T Consensus 161 ~a~v~~-------------------------L---~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v--~~~i~-~~ 208 (362)
T KOG0294|consen 161 VAFVLN-------------------------L---KNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASV--FREIE-NP 208 (362)
T ss_pred cceeec-------------------------c---CCcceeeEEcCCCCEEEEEec-cEEEEEecccHhH--hhhhh-cc
Confidence 543211 1 112234899999999998885 4589999988774 22222 22
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEE--ecCCCeEEEEe
Q 002490 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS--HPEMNLLAAGH 309 (916)
Q Consensus 249 ~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--sp~~~~la~g~ 309 (916)
..+.|+.|- ++..|++|+.|+.|++||..+..+...+..|..+|..+.+ .|++.+|++.+
T Consensus 209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec
Confidence 457777776 6778999999999999999999999999999999999884 34566777655
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=208.45 Aligned_cols=295 Identities=15% Similarity=0.184 Sum_probs=222.4
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEec--ccccCEEEEEEecCCCEEEEE-ECCCeEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRFD--EHDGPVRGVHFHKSQPLFVSG-GDDYKIK 76 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~--~~~~--~h~~~V~~i~fsp~~~~l~s~-~~dg~I~ 76 (916)
+..|++|++.|++++|+.||++||+++.|++|+||+++.-+.. +.++ -.-+.-+.+.|+||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568999999999999999999999999999999998764221 1111 011234778999998765554 4456899
Q ss_pred EEECCC---CeeEEE---------EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEe
Q 002490 77 VWNYKM---HRCLFT---------LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (916)
Q Consensus 77 vWd~~~---~~~~~~---------l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~ 144 (916)
+|.+.. |..... -..|.-.|..+-...++.+|++++.|.+|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 998753 221111 12356677778888888999999999999999998 88888887666667788999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC
Q 002490 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (916)
Q Consensus 145 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 224 (916)
|+|+++++++-.-.|++|.+--.+.-... +..-.+.+.||...|.+++|+|+...+++.+.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fq-------------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQ-------------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchh-------------------hhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 99999999999999999997443322111 11134578999999999999999999999999
Q ss_pred CCcEEEEECCCC-------cceeee--eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee-ccCCcEE
Q 002490 225 DRQVKLWRMNET-------KAWEVD--TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFW 294 (916)
Q Consensus 225 dg~v~iwd~~~~-------~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~ 294 (916)
||++++||.+-. +..... .+....+....+.++|.|+.|+.+. ..+++++..++++...++. .|...|.
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCcee
Confidence 999999997521 111111 1112234455899999999888765 4689999999988777664 4677899
Q ss_pred EEEEecCCCeEEEEeCCCceEEE
Q 002490 295 ILASHPEMNLLAAGHDSGMIVFK 317 (916)
Q Consensus 295 ~l~~sp~~~~la~g~~~~~~v~~ 317 (916)
+++|+++|++++++++.-++++.
T Consensus 378 ~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeecceeeeeec
Confidence 99999999999999887766654
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=192.99 Aligned_cols=247 Identities=20% Similarity=0.354 Sum_probs=210.0
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE-----EEecccccCEEEEEEec----CCCEEEEEE-CCC
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVHFHK----SQPLFVSGG-DDY 73 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~-----~~~~~h~~~V~~i~fsp----~~~~l~s~~-~dg 73 (916)
+-+-|.+.|.|.+|||+|+++|+|+.|.+|++.-++..+.. ..|.-|++.|+.++|-. .+.+|++++ .|.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 34568899999999999999999999999999876544322 35677999999999953 356788775 478
Q ss_pred eEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC--C-----CCceEEEEEecC
Q 002490 74 KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--H-----NHYVMCASFHPK 146 (916)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--h-----~~~v~~l~~~p~ 146 (916)
.|++-|..+|+..+.+.+|.+.|.++ ++-++-.+++++.|++|++||++-..++.++.. | .+.|.+++..|.
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 88888999999999999999999877 455677899999999999999998888887742 2 357999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 226 (916)
|++|++|-.|....+||+++++.. ..+..|...|.++.|+|...++++++.|.
T Consensus 243 grll~sg~~dssc~lydirg~r~i---------------------------q~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMI---------------------------QRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred cceeeeccCCCceEEEEeeCCcee---------------------------eeeCCCccceeEEEeCCCceEEEEecccc
Confidence 999999999999999999997754 36778999999999999999999999999
Q ss_pred cEEEEECCCCcc--eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 227 QVKLWRMNETKA--WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 227 ~v~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
.|++-|+...-. .++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999876432 3355567788888899999999899999999999999764
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=204.58 Aligned_cols=309 Identities=19% Similarity=0.304 Sum_probs=220.3
Q ss_pred EEEEECCCCceE-----EEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe-----eEEEEecCCCCEEEEEEc
Q 002490 33 IQLWDYRMGTLI-----DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-----CLFTLLGHLDYIRTVQFH 102 (916)
Q Consensus 33 I~lwd~~~~~~~-----~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~-----~~~~l~~h~~~v~~v~fs 102 (916)
++-|+.+..+.. ..+++|.+.|++++|+.+|++|+|++.|+.|++|+++... +++. .-.-+..+.+.|.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFA 141 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEEC
Confidence 455665554443 3567999999999999999999999999999999997532 2221 1122356789999
Q ss_pred CCCC-EEEEEECCCcEEEEeCCCCe---EEE---------EEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcc
Q 002490 103 HEYP-WIVSASDDQTIRIWNWQSRT---CIS---------VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (916)
Q Consensus 103 ~~~~-~l~s~s~dg~I~iwd~~~~~---~~~---------~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~ 169 (916)
||-+ .++++-...++++|-+...+ ... .-+.|.-.+..+-....+.+|++++.|..|.+|++++...
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L 221 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL 221 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee
Confidence 9987 44555566689999764221 111 1123555677777777788999999999999999985222
Q ss_pred eeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc------ceeeee
Q 002490 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK------AWEVDT 243 (916)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~ 243 (916)
. .+......-..++.||+|+++++++..--|++|..--.+ ...+..
T Consensus 222 ~----------------------------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 222 Q----------------------------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred e----------------------------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 1 222334445678999999999999999999999863222 123677
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcc
Q 002490 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323 (916)
Q Consensus 244 ~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~ 323 (916)
+.||...|..++|+|+...+++.+.||++++||+.-. +.... |..+|-.|.
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr-----Y~~~q----------Dpk~Lk~g~-------------- 324 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR-----YEAGQ----------DPKILKEGS-------------- 324 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----EecCC----------CchHhhcCC--------------
Confidence 8999999999999999999999999999999997621 11111 111111110
Q ss_pred eEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCC
Q 002490 324 AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (916)
Q Consensus 324 ~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~ 403 (916)
.++...+. .+-.++++|.|+.++++.+ ..+++|.........
T Consensus 325 ------------------------------~pl~aag~-----~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 325 ------------------------------APLHAAGS-----EPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYP 366 (420)
T ss_pred ------------------------------cchhhcCC-----CceEEEeCCCCcEEEeecC---CceEEEEcccCccch
Confidence 11111122 4557999999999998887 678888876643322
Q ss_pred CccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEc
Q 002490 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKN 440 (916)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwd 440 (916)
. ....|.+.|.++.|+++|+++++++ |..+++..
T Consensus 367 ~--~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 E--LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred h--HHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2 3567889999999999999999999 88888865
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.9e-25 Score=204.64 Aligned_cols=247 Identities=22% Similarity=0.298 Sum_probs=200.8
Q ss_pred cccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC---eeEEEEecCCCCEEEEEEcC--CCCEEEEEECCCcEEEEeC
Q 002490 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNW 122 (916)
Q Consensus 48 ~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~---~~~~~l~~h~~~v~~v~fs~--~~~~l~s~s~dg~I~iwd~ 122 (916)
..|+..|..+...-.|++|+|++.|++|+|+...+. +.+.++.||.++|..++|.+ -|..|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468899998888889999999999999999999853 56789999999999999986 7889999999999999998
Q ss_pred CCCe--EEEEEeCCCCceEEEEEecCC--CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 123 QSRT--CISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 123 ~~~~--~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
++++ .......|...|++++|.|.+ -.|++++.||.|.+.+.+....- ....
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------------------------~t~k 143 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------------------------TTSK 143 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc------------------------cchh
Confidence 8774 334567899999999999975 48999999999999998764111 0123
Q ss_pred EEeccCCCeeEEEEcCC---C-----------CEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCC----
Q 002490 199 VLEGHDRGVNWAAFHPT---L-----------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---- 260 (916)
Q Consensus 199 ~~~~~~~~v~~~~~~p~---~-----------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~---- 260 (916)
....|.-+|++++|.|. | +.|++|+.|..|+||+..+..-..-.++.+|...|..++|.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 55679999999999996 4 46999999999999999987433345589999999999999953
Q ss_pred CEEEEEeCCCcEEEEECCCCce---eEEeeccCCcEEEEEEecCCCeEEEEe-CCCceEEEe
Q 002490 261 DIIVSNSEDKSIRVWDVTKRTG---VQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKL 318 (916)
Q Consensus 261 ~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~sp~~~~la~g~-~~~~~v~~~ 318 (916)
.+|++++.||++.||....... ...+....+.++.++||+.|++|+++. ++.+.+|+-
T Consensus 224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 5899999999999998763211 122333567899999999999999765 444445543
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.9e-25 Score=203.27 Aligned_cols=248 Identities=20% Similarity=0.363 Sum_probs=207.8
Q ss_pred cccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---ceEEEecccccCEEEEEEec--CCCEEEEEECCCeEEEEEC
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~---~~~~~~~~h~~~V~~i~fsp--~~~~l~s~~~dg~I~vWd~ 80 (916)
..|.+-|..+...--|++||+++.|++|+|+.++.. +++.++.+|.+||..++|.. .|.+||+++.||+|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888988888888999999999999999999765 56789999999999999954 7899999999999999999
Q ss_pred CCCee--EEEEecCCCCEEEEEEcCC--CCEEEEEECCCcEEEEeCCCC---eEEEEEeCCCCceEEEEEecC---C---
Q 002490 81 KMHRC--LFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPK---E--- 147 (916)
Q Consensus 81 ~~~~~--~~~l~~h~~~v~~v~fs~~--~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~~p~---~--- 147 (916)
++++- ......|...|.+++|.|. |..|++++.||.|.|.+.++. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87753 3455689999999999886 458999999999999988754 223345689999999999985 4
Q ss_pred --------CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC---
Q 002490 148 --------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--- 216 (916)
Q Consensus 148 --------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--- 216 (916)
+.|++|+.|..|+||+....+-+ ....+++|..-|..++|.|.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------------------~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------------------LERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchh-------------------------hhhhhhhcchhhhhhhhccccCCC
Confidence 46999999999999999875221 223588999999999999964
Q ss_pred -CEEEEEECCCcEEEEECCCC-cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 217 -PLIVSGADDRQVKLWRMNET-KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 217 -~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
..|++++.||+|.||..... ..|....+......+..+.||+.|+.|++++.|+.+.+|.-+
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 47999999999999987743 344455556667889999999999999999999999999643
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=219.55 Aligned_cols=246 Identities=23% Similarity=0.423 Sum_probs=203.5
Q ss_pred ccCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCc----------eEEEecccccCEEEEEEecCCC-EEEEEECCCe
Q 002490 7 TKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGT----------LIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYK 74 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~-~la~~~~dg~I~lwd~~~~~----------~~~~~~~h~~~V~~i~fsp~~~-~l~s~~~dg~ 74 (916)
.|.+.|..+.+-|+.+ .+|+.+.++.|+|||+.+-. .-.++.+|.+.=.+++|++... .|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4788888899989765 55667788999999985431 1227789998778999998654 7999999999
Q ss_pred EEEEECCCCe-------eEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCC--CCeEEEEEeCCCCceEEEEEe
Q 002490 75 IKVWNYKMHR-------CLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFH 144 (916)
Q Consensus 75 I~vWd~~~~~-------~~~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~~ 144 (916)
|++||+.... ....+.+|.+.|..++|++-. .+++++++|+.+.|||.+ +.++.....+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997432 345678999999999999854 488999999999999999 566667788999999999999
Q ss_pred cCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-CEEEEE
Q 002490 145 PKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSG 222 (916)
Q Consensus 145 p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~ 222 (916)
|-+ ..||+||.|++|++||+++.++. .+.+.+|...|..+.|+|.. ..|+++
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~--------------------------lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKP--------------------------LHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccC--------------------------ceeccCCCcceEEEEeCCCCCceeEec
Confidence 954 58899999999999999997763 35889999999999999965 578899
Q ss_pred ECCCcEEEEECCCCcc------------eeeeeeecCCCCeEEEEEccCCCE-EEEEeCCCcEEEEECC
Q 002490 223 ADDRQVKLWRMNETKA------------WEVDTLRGHMNNVSCVMFHAKQDI-IVSNSEDKSIRVWDVT 278 (916)
Q Consensus 223 ~~dg~v~iwd~~~~~~------------~~~~~~~~~~~~v~~l~~sp~~~~-l~s~~~dg~i~vwd~~ 278 (916)
+.|+.+.+||+..-.. ..+..-.||...|..+.|+|+..+ |++.++|+.+.||.+.
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999864221 124566799999999999998764 6678899999999986
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-24 Score=214.61 Aligned_cols=291 Identities=15% Similarity=0.261 Sum_probs=235.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEEeCCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcc
Q 002490 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRK 169 (916)
Q Consensus 93 ~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~ 169 (916)
.+.|+++.|||..+.+++|+.|++++||.+. ....+..+.-...+|.+++|+|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999875 3455666766778999999999999 899999999999999987665
Q ss_pred eeccCCccceeeccccccccccccceEEEEEecc-CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC
Q 002490 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (916)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 248 (916)
....+ +.++ ...+.....+|++++|+..+..|.|.+....++.. +.+++ -.
T Consensus 293 ~k~~~-------------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~K-ie 344 (514)
T KOG2055|consen 293 TKLKP-------------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFK-IE 344 (514)
T ss_pred ccccC-------------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheee-ec
Confidence 44322 1122 34567788999999999999999999999988886 44444 45
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCC-cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEe
Q 002490 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (916)
Q Consensus 249 ~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~ 327 (916)
+.|+.++|+.+++.|++++.+|.|.+||++...++..+....+ .-++++.++++.++|+|++.|+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-------------- 410 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-------------- 410 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce--------------
Confidence 7899999999999999999999999999999999888875433 2357888899999999998766
Q ss_pred cCCEEEEEeCCeEEEEEccC----CceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCC
Q 002490 328 SGDSLFYAKDRFLRYYEFST----QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (916)
Q Consensus 328 ~~~~l~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~ 403 (916)
|.+||..+ ..+.|+..+..... .|++++|+|+.+.+++++......+++..++.-..-.
T Consensus 411 ------------VNIYd~~s~~~s~~PkPik~~dNLtt-----~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 411 ------------VNIYDGNSCFASTNPKPIKTVDNLTT-----AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred ------------EEEeccchhhccCCCCchhhhhhhhe-----eeeeeeeCcchhhhhhhhhccccceEEEeccceeeec
Confidence 56777544 44455544443332 8999999999999999998878899999987655432
Q ss_pred CccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC
Q 002490 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (916)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~ 442 (916)
-..+....-+.++|++|||.+.|++.+...|.+.+|.+.
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 222345566789999999999999999999999999764
No 127
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.93 E-value=4.2e-22 Score=204.28 Aligned_cols=562 Identities=15% Similarity=0.182 Sum_probs=349.2
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEE
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF 101 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~f 101 (916)
..++.++.||.+.|.+ +.++..+....|.+.|.+-.|+|+|.-|+|+|.||.|++|+ ++|-...++.....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 4688888999999999 78999999999999999999999999999999999999999 456666666667889999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceee
Q 002490 102 HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181 (916)
Q Consensus 102 s~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 181 (916)
.|+++.++.+. .+.+.|=.+.....+-..+.|.+-|.++.|+|..+.+++|+.|-..++||-.+.
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------------- 218 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------------- 218 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--------------
Confidence 99988666654 356778777777777888999999999999999999999999999999997652
Q ss_pred ccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCC
Q 002490 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD 261 (916)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 261 (916)
..+....|+.+|++++|.|+ ..++.++. +++++ -....+.|..++||+||.
T Consensus 219 --------------~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-------------~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 219 --------------NLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-------------SSPRVGSIFNLSWSADGT 269 (737)
T ss_pred --------------ccccCChhccceeeeeeccc-cceeeeee-eeeee-------------cCCCccceEEEEEcCCCc
Confidence 22345568999999999999 66666653 34442 122346788999999999
Q ss_pred EEEEEeCCCcEEEEECC-------CCceeE------Eee----------ccCCcEEEEEEecCCCeEEEEeCCCceEEEe
Q 002490 262 IIVSNSEDKSIRVWDVT-------KRTGVQ------TFR----------REHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (916)
Q Consensus 262 ~l~s~~~dg~i~vwd~~-------~~~~~~------~~~----------~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~ 318 (916)
.+++|+..|.+.+=-.- ..+... +.+ ....++...+ -.-..+++.....+.+|.-
T Consensus 270 Q~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys~ 347 (737)
T KOG1524|consen 270 QATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYSE 347 (737)
T ss_pred eeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeee--eceeEEEEEeccEEEEEec
Confidence 99999998876543211 111110 000 1123343333 3344555555556666654
Q ss_pred cCCcceEEecC-----------CEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcC
Q 002490 319 ERERPAFAVSG-----------DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV 386 (916)
Q Consensus 319 ~~~~~~~s~~~-----------~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~ 386 (916)
..-+.....++ ...+.. ...++.+|.+..... ...+.+|...---.-+.++..-+ .+++-.+.
T Consensus 348 knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~---~np~~Pg~~~dlL~~rtlsLand--tLaird~a 422 (737)
T KOG1524|consen 348 KNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLH---LNPRYPGSQIDLLTWRTLSLAND--TLAIRDNA 422 (737)
T ss_pred CCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCcee---cCCCCCCcccccccceeeecccc--eEEeecCC
Confidence 44333233322 223333 667788887765322 22222222000001123444433 66666666
Q ss_pred CCCEEEEEEe-eCCCCCCCccccccccCceeEEEEE----eCCcEEEEEcCCCEEEEEccC--CceEEEeeCCCceeEEE
Q 002490 387 DGGSYELYVI-PKDSIGRGDSVQDAKKGLGGSAIFI----ARNRFAVLDKSSNQVLVKNLK--NEVVKKSILPIAADAIF 459 (916)
Q Consensus 387 ~~g~i~i~~~-~~~~~~~~~~~~~~~~~~i~~~~fs----~~~~~l~~~~~d~~I~iwdl~--~~~~~~i~~~~~v~~l~ 459 (916)
+...+.+|+. +......-. ..-.|...+..++.. ++.+.++.-+.++.++|-..+ +..-+-++....|..++
T Consensus 423 d~kvlhlFd~istgk~qgDg-k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 423 DPKVLHLFDLISTGKRQGDG-KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLA 501 (737)
T ss_pred CCeeEEeccCCCCCcccCCc-cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhh
Confidence 7777888887 333221100 122344445555544 445777777778888887776 34444455556899999
Q ss_pred EeCCceEEEE-ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEeeeeeEEEEEEe
Q 002490 460 YAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWD 538 (916)
Q Consensus 460 ~s~~g~~l~~-~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~~~~~i~s~~w~ 538 (916)
|+...++|+- .|+.+.+|-.+.- .++ |...|.- .+..++++.....
T Consensus 502 wndttNiLcglqDt~fsVWy~pn~--------------vyv-DrdiLpk------Tlierdt~efgKn------------ 548 (737)
T KOG1524|consen 502 WNDTTNILCGLQDTCFSVWYYPNE--------------VYV-DRDILPK------TLIERDTTEFGKN------------ 548 (737)
T ss_pred hccccceeeeeccceEEEEEcCCc--------------cee-cccccch------hheecchhhccCC------------
Confidence 9999999987 8999999975321 111 1111110 0111111110000
Q ss_pred cCCeEEEEcCCceeEEccCCceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhc
Q 002490 539 DNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIR 618 (916)
Q Consensus 539 ~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~ 618 (916)
..+.+ | -|...+|+..+-++-.+++. .+.--..+| +...++++|+|+.+
T Consensus 549 ---pqIvs------F---vgNqvtirrsdG~LlpisV~--------------py~~iL~e~-----~sssKWeqavRLCr 597 (737)
T KOG1524|consen 549 ---PQIVS------F---VGNQVTIRRSDGALLPISVN--------------PYPEILHEY-----LSSSKWEQAVRLCR 597 (737)
T ss_pred ---cceee------e---eccEEEEEeccCceEeeecc--------------ccHHHHHHH-----hccchHHHHHHHHH
Confidence 00000 0 01111122111111111110 000112233 66788999999988
Q ss_pred cCcccchhHHHHHHHCCCchhhcccccCcchhhhhhhhcCC---HHHHHHHHHHcCC----------HHHHHHHHHHHHH
Q 002490 619 NSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGN---IQIAVASAKEIDE----------KDHWYRLGVEALR 685 (916)
Q Consensus 619 ~~~~~~~~i~~~l~~~~~~e~al~~~~~~~~~f~lal~~g~---~~~A~~~a~~~~~----------~~~w~~la~~al~ 685 (916)
-.+. +.|++.|-. +|+..-+ .|+|+.++.+++. +..=.++|+..+.
T Consensus 598 fv~e--qTMWAtlAa-------------------~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~ 656 (737)
T KOG1524|consen 598 FVQE--QTMWATLAA-------------------VAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLM 656 (737)
T ss_pred hccc--hHHHHHHHH-------------------HHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHH
Confidence 7654 667775432 2222222 3344444333221 2234778999999
Q ss_pred cCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHH
Q 002490 686 QGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKML 722 (916)
Q Consensus 686 ~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~ 722 (916)
.|++..||..+.+.|-......|.+..-|.+++-++.
T Consensus 657 ~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~ 693 (737)
T KOG1524|consen 657 LGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELS 693 (737)
T ss_pred hccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999888888877777777665553
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.1e-24 Score=219.25 Aligned_cols=277 Identities=15% Similarity=0.289 Sum_probs=235.6
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---ceEEEec--ccccCEEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~---~~~~~~~--~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~ 81 (916)
.|..-|.++++|...+.+.+|+. |.|+|||+... ..+..+. ..+.-|+++..+|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888889999999999999975 77999998643 2334443 246679999999999999999999999999998
Q ss_pred CCe--eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 82 MHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 82 ~~~--~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
... ....+....-...+++.+||.+..+++..||.|.|||+.+...++.+++|...+.|+..+++|..|.+|+.|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 543 333444444567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~ 239 (916)
|.||++.+++... ......|.++.++|++.++++|-.++.+.+.......
T Consensus 576 RcWDlregrqlqq----------------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-- 625 (705)
T KOG0639|consen 576 RCWDLREGRQLQQ----------------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-- 625 (705)
T ss_pred eehhhhhhhhhhh----------------------------hhhhhhheecccCCCccceeeecccCcEEEEecCCcc--
Confidence 9999998775432 1235678999999999999999999999998877766
Q ss_pred eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCC-CceEE
Q 002490 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS-GMIVF 316 (916)
Q Consensus 240 ~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~-~~~v~ 316 (916)
...+..|...|.++.|.+-|+++++.+.|.-+..|.+.-|..+...+ +...|.+..+|.+.+++++|+.+ ...+|
T Consensus 626 -kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 626 -KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred -ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 56677899999999999999999999999999999998888777665 56789999999999999999854 34444
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1e-23 Score=223.10 Aligned_cols=283 Identities=24% Similarity=0.392 Sum_probs=235.2
Q ss_pred CceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE--EEEecCCCCEEE-EEEcC-CCCEEEEEECCCc
Q 002490 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL--FTLLGHLDYIRT-VQFHH-EYPWIVSASDDQT 116 (916)
Q Consensus 41 ~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~--~~l~~h~~~v~~-v~fs~-~~~~l~s~s~dg~ 116 (916)
-++.+.+.+|+..|+.+++.+.. .++++|.||++++|+-..++.+ ..+.+|.+.|.+ +++-+ ++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 35667889999999999986655 7999999999999997665544 346678887777 88875 4446999999999
Q ss_pred EEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceE
Q 002490 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (916)
Q Consensus 117 I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (916)
|.+|...+..++.++++|...|.|+....++. +++||.|.++++|-+.. +
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----------------------------l 132 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----------------------------L 132 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----------------------------h
Confidence 99999999999999999999999999876765 99999999999998765 4
Q ss_pred EEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002490 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (916)
Q Consensus 197 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd 276 (916)
...+.+|...|++++.-|.+ .+++|+.|.+|++|.- ++. +.++.+|...|..+++-|++ .+++++.||.|+.|+
T Consensus 133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~--l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL--LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWD 206 (745)
T ss_pred hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch--hhhhccchhheeeeEEecCC-CeEeecCCceEEEEe
Confidence 45689999999999999998 8999999999999976 443 78999999999999998764 588999999999999
Q ss_pred CCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEe
Q 002490 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (916)
Q Consensus 277 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 356 (916)
+ ++..+..+.+|..-+++++..+++..+++++ .|+++++|+.. .+.+.+.+
T Consensus 207 ~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g--------------------------EDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG--------------------------EDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred c-cCceeeeeeccceEEEEEEecCCCCeEEEec--------------------------CCceEEEeecC--ceEEEEec
Confidence 8 7899999999999999999766666666655 56888999876 55555555
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 357 ~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
+. . .+.++.+-++|.. ++++ .||.+++|.....
T Consensus 258 Pt----t---siWsa~~L~NgDI--vvg~-SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 258 PT----T---SIWSAKVLLNGDI--VVGG-SDGRVRVFTVDKD 290 (745)
T ss_pred Cc----c---ceEEEEEeeCCCE--EEec-cCceEEEEEeccc
Confidence 43 2 7788888889884 3444 3489999998644
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=1.9e-23 Score=217.58 Aligned_cols=485 Identities=12% Similarity=0.213 Sum_probs=301.2
Q ss_pred ccccccCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCceE------EEecccccCEEEEEEecCCCEEEEEECCCeE
Q 002490 3 TKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLI------DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~~~~~------~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I 75 (916)
-.|.+|+..|+.+.|+| +..+||+++.|..|+||.+..|-.. ..+.+..-.|-++.|||...-+...+.-|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 35789999999999999 5568999999999999999744211 1233345568999999987666666677999
Q ss_pred EEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEEeCCCCc-eEEEEEecCCCEEEEE
Q 002490 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (916)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~h~~~-v~~l~~~p~~~~l~s~ 153 (916)
+|||+.+++.+..+.+|.+.|.+..|+.||.++++++.|+.|+|||.+ .++.++...+|.+. =..+.|.-+-..|++.
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisT 232 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIST 232 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhc
Confidence 999999999999999999999999999999999999999999999987 56778888888653 2346666544466666
Q ss_pred ECC----CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE-CCCcE
Q 002490 154 SLD----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQV 228 (916)
Q Consensus 154 s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v 228 (916)
+-+ ..|++||.+...... ...-.....+|.---|.||.++++.++ .+.++
T Consensus 233 GF~~~R~reV~~~Dtr~f~~p~-------------------------~tleld~stGvLiPl~DpDt~llfLaGKG~~~l 287 (1012)
T KOG1445|consen 233 GFTTKRIREVRAYDTRKFGAPV-------------------------HTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKL 287 (1012)
T ss_pred ccchhhheeeeeeeccccCCcc-------------------------eeEEeecccceEeeeecCCCceEEEecCCcceE
Confidence 544 569999987643211 111112334566667888877655544 57778
Q ss_pred EEEECCCCcceeeeeee--------c----------------------CCCCeEEE----------EEccC---------
Q 002490 229 KLWRMNETKAWEVDTLR--------G----------------------HMNNVSCV----------MFHAK--------- 259 (916)
Q Consensus 229 ~iwd~~~~~~~~~~~~~--------~----------------------~~~~v~~l----------~~sp~--------- 259 (916)
..+.+...+.+....++ + ....|.-+ .||.|
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 88877665542111100 0 00111000 01100
Q ss_pred -----CCEEEEEeCCCcEEEEECC--------------------------------------------------------
Q 002490 260 -----QDIIVSNSEDKSIRVWDVT-------------------------------------------------------- 278 (916)
Q Consensus 260 -----~~~l~s~~~dg~i~vwd~~-------------------------------------------------------- 278 (916)
|.++. +.+..+.-..+.
T Consensus 368 p~~~ageWln--G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpa 445 (1012)
T KOG1445|consen 368 PGCTAGEWLN--GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPA 445 (1012)
T ss_pred cCcCccceec--CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCC
Confidence 00000 000000000000
Q ss_pred --CCceeEEe-----e----------------ccCCcEEEEE------EecCC------------------Ce-------
Q 002490 279 --KRTGVQTF-----R----------------REHDRFWILA------SHPEM------------------NL------- 304 (916)
Q Consensus 279 --~~~~~~~~-----~----------------~~~~~i~~l~------~sp~~------------------~~------- 304 (916)
++...+.+ . +..+++..+. .-|.. +.
T Consensus 446 V~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~ 525 (1012)
T KOG1445|consen 446 VPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPV 525 (1012)
T ss_pred cCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCc
Confidence 00000000 0 0000000000 00000 00
Q ss_pred ---EEEEeCCC----------------ceEE----------------------EecCCcceEEecCCEEEEE---eCCeE
Q 002490 305 ---LAAGHDSG----------------MIVF----------------------KLERERPAFAVSGDSLFYA---KDRFL 340 (916)
Q Consensus 305 ---la~g~~~~----------------~~v~----------------------~~~~~~~~~s~~~~~l~~~---~d~~i 340 (916)
.-.+..++ +.-| .+..+..-|..+..++++- ..|.|
T Consensus 526 ~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 526 NFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred ccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 00000000 0000 0000111344444455554 68899
Q ss_pred EEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCC-CEEEEEEcCCCCEEEEEEeeCCCCCCC----ccccccccCce
Q 002490 341 RYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE-NAVLICSDVDGGSYELYVIPKDSIGRG----DSVQDAKKGLG 415 (916)
Q Consensus 341 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~-~~llv~~~~~~g~i~i~~~~~~~~~~~----~~~~~~~~~~i 415 (916)
-+|++...-.++--.+...-... .|+.+.|.|-. ..++|++ ++|.|+||.+..+..... ...+..|...|
T Consensus 606 ai~el~~PGrLPDgv~p~l~Ngt---~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 606 AIYELNEPGRLPDGVMPGLFNGT---LVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred EEEEcCCCCCCCcccccccccCc---eeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 99999874443333332222212 88999999944 4566554 679999999986654322 22466888899
Q ss_pred eEEEEEeC-CcEEEEEcCCCEEEEEccCC-ceEEEeeCCC-ceeEEEEeCCceEEEE--ECCEEEEEEcCCCeE-EEEEE
Q 002490 416 GSAIFIAR-NRFAVLDKSSNQVLVKNLKN-EVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLV-LGDLQ 489 (916)
Q Consensus 416 ~~~~fs~~-~~~l~~~~~d~~I~iwdl~~-~~~~~i~~~~-~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~-~~~~~ 489 (916)
+++.|+|= ...|++++.|-+|++||+.+ ....++..|. .|..++|||+|+.+++ .|+++++|...+++. +.+-+
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 99999985 36888888899999999996 4555677766 9999999999999988 899999999877654 33322
Q ss_pred ---cCCeeEEEEcCCCCEEEEEe-----CCeEEEEecC
Q 002490 490 ---TPFVKYVVWSNDMESVALLS-----KHAIIIASKK 519 (916)
Q Consensus 490 ---~~~v~~v~~s~d~~~la~~~-----~~~i~i~~~~ 519 (916)
+..--.|.|..||+++++.+ ..++.+||..
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 24456799999999998876 2367777654
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.4e-22 Score=213.92 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=216.9
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEE-EEEECCCeEEEEECCCCeeEEEEecCCCCEEEEE
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l-~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~ 100 (916)
..+++++.|+.|.+||..+++.+..+..|.. +.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678888999999999999999998876654 6789999999876 5677889999999999888877765444 56789
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCC-eEEEEECCCCcceeccCCccc
Q 002490 101 FHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ-TVRVWDIGALRKKTVSPADDI 178 (916)
Q Consensus 101 fs~~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~ 178 (916)
|+|+++.++++ +.++.|++||+++++.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+.+...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~------- 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD------- 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE-------
Confidence 99999977654 5689999999999888877763 34568899999999999988765 46778886643211
Q ss_pred eeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE-CCCcEEEEECCCCcceeeeeeecC-------CCC
Q 002490 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGH-------MNN 250 (916)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~-------~~~ 250 (916)
... .......++|+|+++++++++ .++.|++||+.+.+. +..+..+ ...
T Consensus 152 --------------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 152 --------------------NVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQ 208 (300)
T ss_pred --------------------EEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee--eeeeeecccccccccCC
Confidence 111 123456789999999886554 589999999998775 3333211 112
Q ss_pred eEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecC
Q 002490 251 VSCVMFHAKQDIIVSN-SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSG 329 (916)
Q Consensus 251 v~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~ 329 (916)
...++|+|++++++++ +.++.+.+||+.+++.+..+. +...+.+++|+|++.+|+++..
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~------------------- 268 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG------------------- 268 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-------------------
Confidence 3568899999986554 456789999999888766553 3457889999999998877542
Q ss_pred CEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcC
Q 002490 330 DSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (916)
Q Consensus 330 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (916)
.++.|.+||+.+++.+..+.+.. .+..++++|
T Consensus 269 ------~~~~i~v~d~~~~~~~~~~~~~~--------~~~~~~~~~ 300 (300)
T TIGR03866 269 ------VSNDVSVIDVAALKVIKSIKVGR--------LPWGVVVRP 300 (300)
T ss_pred ------CCCeEEEEECCCCcEEEEEEccc--------ccceeEeCC
Confidence 35778999999988877776533 667777765
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.1e-23 Score=198.70 Aligned_cols=273 Identities=14% Similarity=0.224 Sum_probs=205.4
Q ss_pred ccccCEEEEEEec-CCCEEEEEECCCeEEEEECCC-CeeE-EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 002490 49 EHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM-HRCL-FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125 (916)
Q Consensus 49 ~h~~~V~~i~fsp-~~~~l~s~~~dg~I~vWd~~~-~~~~-~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~ 125 (916)
..+..|.+++||| ...+++.+|.|++|++|+++. +..+ .....|.++|.+++|+.||..+++++.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4677899999999 445666889999999999986 3433 334579999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCceEEEEEecCCC--EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEecc
Q 002490 126 TCISVLTGHNHYVMCASFHPKED--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (916)
Q Consensus 126 ~~~~~~~~h~~~v~~l~~~p~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (916)
+ +..+..|..+|.++.|-+... .|++||.|.+|++||.+........ . -
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-------------------------~---L 155 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-------------------------Q---L 155 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-------------------------e---c
Confidence 5 556667999999999987665 8999999999999999875433211 1 1
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC--c
Q 002490 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR--T 281 (916)
Q Consensus 204 ~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~--~ 281 (916)
...+.++..- .++++++..++.|.+|+++++............-.+.|++..++.+..+.|+-+|.+.+..+..+ +
T Consensus 156 PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 156 PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 2334443332 35788999999999999977653212222233456889999999998999999999999988876 4
Q ss_pred eeEEeeccCC---------cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceee
Q 002490 282 GVQTFRREHD---------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (916)
Q Consensus 282 ~~~~~~~~~~---------~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~ 352 (916)
.-.+|+.|.. .|.+++|+|....|++.+ .||.+.+||-.....+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG--------------------------sDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG--------------------------SDGTFSFWDKDARTKLK 287 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEec--------------------------CCceEEEecchhhhhhh
Confidence 4445555542 366788999766666554 45777888876543322
Q ss_pred eEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEc
Q 002490 353 VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~ 385 (916)
. .+.. ..+|++.+|+.+|..++.+.+
T Consensus 288 ~--s~~~-----~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 288 T--SETH-----PQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred c--cCcC-----CCccceeEecCCCCEEEEEee
Confidence 2 1222 339999999999999888876
No 133
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.4e-24 Score=212.52 Aligned_cols=285 Identities=16% Similarity=0.317 Sum_probs=229.8
Q ss_pred EEEecccccCEEEEEEecCC-CEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 002490 44 IDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~-~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~ 122 (916)
+..+.+|...|.|++=+|.. ..++||+.||.|++||+.+..++.++..|.+.|+.+++.. ..++++++|.+|+.|-+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999988 7899999999999999999999999999999999999988 56999999999999997
Q ss_pred CCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec
Q 002490 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (916)
Q Consensus 123 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (916)
.. .++.++.+ .+.+..+.-+..++.+++++. .|.|||........ .+.-
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~---------------------------smsw 185 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVS---------------------------SMSW 185 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccc---------------------------eeec
Confidence 65 45666654 345667777777788888874 48999987644322 3444
Q ss_pred cCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-
Q 002490 203 HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR- 280 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~- 280 (916)
....|.++.|+|... .|+++++|+.|.+||++...+.....+. .....++|+|.+-.+.++++|..++.||++..
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee---ccccceecCccccceeeccccccceehhhhhhc
Confidence 556789999999654 6777779999999999998873222222 33457899998888999999999999999864
Q ss_pred ceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCC
Q 002490 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (916)
Q Consensus 281 ~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 360 (916)
.++..+..|.+.+..+.|||.|.-+++|+ .|++|++|....+....+...++
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~Efvsgs--------------------------yDksIRIf~~~~~~SRdiYhtkR-- 314 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGS--------------------------YDKSIRIFPVNHGHSRDIYHTKR-- 314 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhcccc--------------------------ccceEEEeecCCCcchhhhhHhh--
Confidence 56777888889999999999999999988 67889999988876655554443
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeC
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (916)
Q Consensus 361 ~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~ 398 (916)
-..|.++.||.|.++++ +++|++.+++|....
T Consensus 315 ----Mq~V~~Vk~S~Dskyi~--SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 315 ----MQHVFCVKYSMDSKYII--SGSDDGNVRLWKAKA 346 (433)
T ss_pred ----hheeeEEEEeccccEEE--ecCCCcceeeeecch
Confidence 12889999999999654 455889999998653
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.5e-23 Score=197.14 Aligned_cols=289 Identities=18% Similarity=0.260 Sum_probs=219.9
Q ss_pred ccCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCc------eE----E-----EecccccCEEEEEEec-CCCEEEEE
Q 002490 7 TKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGT------LI----D-----RFDEHDGPVRGVHFHK-SQPLFVSG 69 (916)
Q Consensus 7 ~h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~~~------~~----~-----~~~~h~~~V~~i~fsp-~~~~l~s~ 69 (916)
.|.+.|.++...+ .|+++++|+.||.|.+||++.-. .+ . .-.+|.-.|..+.|-| |...|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999988 68899999999999999997543 11 1 1136888999999998 56689999
Q ss_pred ECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCC---CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecC
Q 002490 70 GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY---PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146 (916)
Q Consensus 70 ~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~ 146 (916)
+.|.+++|||..+.+....++ ..+.|.+-+++|-. -++++|..+-.|++.|+.+|.+..++.||...|+++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999988887776 57788888888843 38889999999999999999999999999999999999998
Q ss_pred CC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC
Q 002490 147 ED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 147 ~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 225 (916)
.. .|++|+.||.|++||++...--. ..+...+. ........-..|.+.++.++|..++.++++++.|
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf-------~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCF-------RVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred ceeEEEecCCCceEEEEEeeccccee-------EEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCc
Confidence 77 67899999999999997631110 00111110 0001112345789999999999999999999999
Q ss_pred CcEEEEECCCCcceeeeeee-cCCCCeEEEEE---ccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 226 RQVKLWRMNETKAWEVDTLR-GHMNNVSCVMF---HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~-~~~~~v~~l~~---sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
..+++|++.++.......-+ .|... .+.++ +.+...++---.++.+.++++-++..+..+..|..++.+.++.|+
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred cceEEeecccCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCc
Confidence 99999999887652111111 11111 11111 223344444455688999999999999999999888999999888
Q ss_pred CCeEEEEe
Q 002490 302 MNLLAAGH 309 (916)
Q Consensus 302 ~~~la~g~ 309 (916)
-....+|.
T Consensus 347 fq~~~tg~ 354 (397)
T KOG4283|consen 347 FEQCFTGD 354 (397)
T ss_pred hhhhhccc
Confidence 77766665
No 135
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.3e-21 Score=209.19 Aligned_cols=450 Identities=14% Similarity=0.188 Sum_probs=295.7
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC---EEEEEECCCeEEEEECCCCeeEEEEe
Q 002490 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKMHRCLFTLL 90 (916)
Q Consensus 14 ~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~---~l~s~~~dg~I~vWd~~~~~~~~~l~ 90 (916)
.-.||+|+++++.. .+..|.||...+|.++..+.+|..++..+.+.|... ++.+++.||.|++||...+..+.++.
T Consensus 21 ~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 34589999988776 467899999999999999999999999999988654 67799999999999999999999887
Q ss_pred cCCCCEEEEEEcC---CCCEEEEEECCCcEEEEe---CCCCeE-----EE--------EEeCCCCceEEEEEecCCCEEE
Q 002490 91 GHLDYIRTVQFHH---EYPWIVSASDDQTIRIWN---WQSRTC-----IS--------VLTGHNHYVMCASFHPKEDLVV 151 (916)
Q Consensus 91 ~h~~~v~~v~fs~---~~~~l~s~s~dg~I~iwd---~~~~~~-----~~--------~~~~h~~~v~~l~~~p~~~~l~ 151 (916)
.+. ++..+.+.| +.+.++..+.+. .++.. ...... +. .+..|.. -.++.+++.|.+..
T Consensus 100 ~~~-~v~~~~~~~~~a~~s~~~~~s~~~-~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 100 NNL-PVHALVYKPAQADISANVYVSVED-YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG 176 (792)
T ss_pred cCC-ceeEEEechhHhCccceeEeeccc-ceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence 433 344444432 111222122111 11111 111110 11 1122222 35677888887666
Q ss_pred EEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEE
Q 002490 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (916)
Q Consensus 152 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iw 231 (916)
..- +..+.+|......+.. .. ...-..|...+++.++||+++++++|..||+|.+|
T Consensus 177 i~~-~~~~~~~~v~~~~~~~-~~----------------------~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 177 IVH-MCKIHIYFVPKHTKHT-SS----------------------RDITVHHTFNITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred EEE-eeeEEEEEecccceee-cc----------------------chhhhhhcccceeEEeccccceEEEeccCCcEEEE
Confidence 555 5568888887644211 11 11223466668999999999999999999999999
Q ss_pred ECCC--CcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 232 RMNE--TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 232 d~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
.-.. ........+..|...|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+++-.++|..+.++||+.+.+...
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 7554 3333467788899999999999999999999999999999999988 556777889999999999999887655
Q ss_pred CCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE-ecCC--C-CCCCCcCCeEEEEcCCCCEEEEEEc
Q 002490 310 DSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IRRP--G-STSLNQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 310 ~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~-~~~~--~-~~~~~~~i~~l~~sp~~~~llv~~~ 385 (916)
.|++|.+....+-.....++ +... . ......-.+.++++|.-+.++..+
T Consensus 312 --------------------------~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~- 364 (792)
T KOG1963|consen 312 --------------------------EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG- 364 (792)
T ss_pred --------------------------cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC-
Confidence 23333333332211110000 0000 0 000022567788999555444433
Q ss_pred CCCCEEEEEEeeCCCCCCCcc-----c--cc-cccCceeEEEEEeCCcEEEEEcC--------C--CEEEEEccCCc---
Q 002490 386 VDGGSYELYVIPKDSIGRGDS-----V--QD-AKKGLGGSAIFIARNRFAVLDKS--------S--NQVLVKNLKNE--- 444 (916)
Q Consensus 386 ~~~g~i~i~~~~~~~~~~~~~-----~--~~-~~~~~i~~~~fs~~~~~l~~~~~--------d--~~I~iwdl~~~--- 444 (916)
..|.+++|++.+........ . .. .+.-.++.++.+..|.++++... | ..+++|-....
T Consensus 365 -~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 365 -HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred -CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 56899999987665421110 0 01 22334677777777888888632 2 36778877631
Q ss_pred --eEEEeeCCC---ceeEEEEeCCce-EEEE--ECCEEEEEEcCCCe------------EEEEEEcCCeeEEEEcCCCCE
Q 002490 445 --VVKKSILPI---AADAIFYAGTGN-LLCR--AEDRVVIFDLQQRL------------VLGDLQTPFVKYVVWSNDMES 504 (916)
Q Consensus 445 --~~~~i~~~~---~v~~l~~s~~g~-~l~~--~d~~v~l~d~~~~~------------~~~~~~~~~v~~v~~s~d~~~ 504 (916)
...++..|. .+..++.++... ..++ .++.+++|-+...+ .+..++..++...+||.||+.
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl 523 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL 523 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence 222333333 233333444433 4444 79999999884333 223334578999999999999
Q ss_pred EEEEeCCeEEEEecCC
Q 002490 505 VALLSKHAIIIASKKL 520 (916)
Q Consensus 505 la~~~~~~i~i~~~~~ 520 (916)
|++..+++|.+||...
T Consensus 524 la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 524 LAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecCCEEEEecCCC
Confidence 9999999999999987
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.8e-23 Score=207.60 Aligned_cols=283 Identities=15% Similarity=0.275 Sum_probs=227.7
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECC--CCceEEEecccccCEEEEEEecCCC-EEEEEECCCeEEEEECCCCee
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRC 85 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~--~~~~~~~~~~h~~~V~~i~fsp~~~-~l~s~~~dg~I~vWd~~~~~~ 85 (916)
.++|+++.|||..+.|++++.||+++||.+. ....++.+.--..||.+.+|+|+|. .+++++.......||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3689999999999999999999999999874 3456677766788999999999999 899999999999999998765
Q ss_pred EE--EEecCC-CCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 86 LF--TLLGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 86 ~~--~l~~h~-~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
.. .+.++. ..+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 43 333443 357778889999999999999999999999999999887 56889999999999999999999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC----Ccc
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----TKA 238 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~----~~~ 238 (916)
|++....... +.-.+ .-.-++++.++++.+|++|+..|.|.|||.++ ..+
T Consensus 372 nl~~~~~~~r-------------------------f~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 372 NLRQNSCLHR-------------------------FVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred ecCCcceEEE-------------------------EeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 9988543221 11111 12335678889999999999999999999654 233
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeEEeeccC---CcEEEEEEecCCCeEEEEeCCC-
Q 002490 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSE--DKSIRVWDVTKRTGVQTFRREH---DRFWILASHPEMNLLAAGHDSG- 312 (916)
Q Consensus 239 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~sp~~~~la~g~~~~- 312 (916)
.++.++..-...|++++|+|+.++|+.+|. ...+|+-.+.+.+....+...+ +.++|++|+|.+.++|+|.+.|
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 346666666778999999999999988875 5678988888777666655443 5689999999999999998543
Q ss_pred ceEEEe
Q 002490 313 MIVFKL 318 (916)
Q Consensus 313 ~~v~~~ 318 (916)
+.+|++
T Consensus 506 v~l~kL 511 (514)
T KOG2055|consen 506 VHLFKL 511 (514)
T ss_pred eeeEee
Confidence 334443
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-23 Score=210.65 Aligned_cols=251 Identities=16% Similarity=0.319 Sum_probs=211.7
Q ss_pred EEEEEec-CCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEE
Q 002490 23 WILASLH-SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF 101 (916)
Q Consensus 23 ~la~~~~-dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~f 101 (916)
+++++.. ...|.+|.+..........--.++|.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 5555543 346888987655444433346788999999999999999989999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCC---------CCeEEEEEeCCCCceEEEEEecCC--CEEEEEECCCeEEEEECCCCcce
Q 002490 102 HHEYPWIVSASDDQTIRIWNWQ---------SRTCISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 102 s~~~~~l~s~s~dg~I~iwd~~---------~~~~~~~~~~h~~~v~~l~~~p~~--~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
+.|+.+|+||+.||.|.+|.+. +-+++..+..|.-+|+.+...+.| .+++++|.|.++++||+..+...
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999763 346778899999999999988754 49999999999999999886432
Q ss_pred eccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc-------------
Q 002490 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK------------- 237 (916)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~------------- 237 (916)
. --..+..+.+++.+|.+..+.+|+.+|.|.+.++....
T Consensus 212 l----------------------------ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 212 L----------------------------TITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred E----------------------------EEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 1 12246789999999999999999999999988765433
Q ss_pred -ceeeeeeecCCC--CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 238 -AWEVDTLRGHMN--NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 238 -~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
...+..+.||.+ +|+|++++-||.+|++|+.||.++|||+.+.++++++....++|+.+.+.|-
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 123556778988 9999999999999999999999999999999999998877788998888664
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.1e-24 Score=231.13 Aligned_cols=260 Identities=24% Similarity=0.487 Sum_probs=232.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v 99 (916)
-...++.+...-.+++||.+ .+-.|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 33444555555667788853 344688889999887888999999999999999998888888899999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccce
Q 002490 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (916)
Q Consensus 100 ~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 179 (916)
.|+++..+|++|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+.++|+.|+.+++||++...
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G----------- 145 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG----------- 145 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999998533
Q ss_pred eeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
+.+...+|...+..+.|+|+|++++.|++|..++|||...++. ...+..|.+.+.++.|+|.
T Consensus 146 ----------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 146 ----------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred ----------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc--ccccccccccccccccCch
Confidence 4457778999999999999999999999999999999999997 7888999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCce
Q 002490 260 QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI 314 (916)
Q Consensus 260 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~ 314 (916)
.-++++|+.|+++++||+++...+.........|.+.+|+|++..+.+|......
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 9999999999999999999988888888888899999999999999998765554
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.1e-24 Score=231.22 Aligned_cols=238 Identities=24% Similarity=0.467 Sum_probs=218.8
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
+++-.|+..|.|+..-..++.+++|+.+..+-||.+.....+..|.+|+.+|.++.|++...+|+.|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 46778999999999877889999999999999999888878888999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 83 ~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
.+.++++.+|...+..+.|+|-+.+.++++.|+.+++||.+...|...+.+|...|.++.|+|+|.++++++.|.++++|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeee
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 242 (916)
|...++.. ..+..|...+.++.|+|..-+++.|+.|++|++||+++... +.
T Consensus 182 d~~agk~~---------------------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--I~ 232 (825)
T KOG0267|consen 182 DLTAGKLS---------------------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--IS 232 (825)
T ss_pred cccccccc---------------------------cccccccccccccccCchhhhhccCCCCceeeeeccceeEE--ee
Confidence 99776533 35677999999999999999999999999999999998765 66
Q ss_pred eeecCCCCeEEEEEccCCCEEEEEeCC
Q 002490 243 TLRGHMNNVSCVMFHAKQDIIVSNSED 269 (916)
Q Consensus 243 ~~~~~~~~v~~l~~sp~~~~l~s~~~d 269 (916)
........|.+..|+|++..+++|...
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 666667889999999999998888654
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=205.91 Aligned_cols=294 Identities=14% Similarity=0.232 Sum_probs=228.8
Q ss_pred CCeEEEEECCCCceEEEeccc-ccCEEEEEEecCCCEEEEEE-CCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 30 SGVIQLWDYRMGTLIDRFDEH-DGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 30 dg~I~lwd~~~~~~~~~~~~h-~~~V~~i~fsp~~~~l~s~~-~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
..++.+||+++|....++++. ...-.++..- .+.+++++. ....|.+|.+..........--.++|.+++-+|+|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 356999999999999888764 2222222221 224555554 4568999998765554433445788999999999999
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeecccccc
Q 002490 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (916)
Q Consensus 108 l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 187 (916)
++.++..|.|++|.+.+|..+..+..|-..|+|+.|+.||.+|++||.||.|.+|.+...-.....
T Consensus 96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~-------------- 161 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND-------------- 161 (476)
T ss_pred EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC--------------
Confidence 999989999999999999999999999999999999999999999999999999998653211100
Q ss_pred ccccccceEEEEEeccCCCeeEEEEcCC--CCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEE
Q 002490 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (916)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 265 (916)
......+.+..|..+|+.+...+. ..++++++.|+++++||+..+.. +.++ .....+.+++.+|-+..+++
T Consensus 162 ----~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti-~fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 162 ----HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTI-TFPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ----CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee--eEEE-ecCCcceeEEEcccccEEEe
Confidence 022356688899999999888765 45899999999999999999985 3333 34578999999999999999
Q ss_pred EeCCCcEEEEECCCCc----------------eeEEeeccCC--cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEe
Q 002490 266 NSEDKSIRVWDVTKRT----------------GVQTFRREHD--RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (916)
Q Consensus 266 ~~~dg~i~vwd~~~~~----------------~~~~~~~~~~--~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~ 327 (916)
|+++|.|.+.++.+.. .+..+.+|.+ .|++++.+-||.+|++|+
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd------------------ 296 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD------------------ 296 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC------------------
Confidence 9999999988765322 3444556666 899999999999999888
Q ss_pred cCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCC
Q 002490 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (916)
Q Consensus 328 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~ 378 (916)
.|+.+.+||+.+.+++..+... .++|+.+.+.|-.+
T Consensus 297 --------~dg~VcvWdi~S~Q~iRtl~~~-------kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 297 --------EDGKVCVWDIYSKQCIRTLQTS-------KGPVTNLQINPLER 332 (476)
T ss_pred --------CCCCEEEEecchHHHHHHHhhh-------ccccceeEeecccc
Confidence 5788999999998887766521 12888898877544
No 141
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-21 Score=189.35 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=211.8
Q ss_pred cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 50 h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
....|+++.|+|.+..|+.++.||.+++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.+++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce-
Confidence 36679999999999999999999999999999876655555 89999999999854 6999999999999999887754
Q ss_pred EEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeE
Q 002490 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (916)
Q Consensus 130 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 209 (916)
.+..|...|.|+.+++-...+++||.|++|++||.+....... + .....|.+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~---------------------------~-d~~kkVy~ 140 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT---------------------------F-DQGKKVYC 140 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc---------------------------c-ccCceEEE
Confidence 4456999999999999889999999999999999986222111 1 12235666
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEE
Q 002490 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQT 285 (916)
Q Consensus 210 ~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~ 285 (916)
+... ++.|++|+.++.|.+||+++........-......+.|+++-|++.=.++++-||.|.+=.+... .....
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 6554 56899999999999999998775322223344567899999999888999999999988766655 33344
Q ss_pred eeccC---------CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEe
Q 002490 286 FRREH---------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (916)
Q Consensus 286 ~~~~~---------~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 356 (916)
|+.|. -+|.+++|||-...|++|+ .||.|.+||..+.+.+..+.
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG--------------------------sDG~V~~Wd~~~rKrl~q~~- 271 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG--------------------------SDGIVNIWDLFNRKRLKQLA- 271 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecC--------------------------CCceEEEccCcchhhhhhcc-
Confidence 55443 2688999999988899888 45668899998866554432
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEc
Q 002490 357 RRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 357 ~~~~~~~~~~~i~~l~~sp~~~~llv~~~ 385 (916)
+. ...|.+++|+.+|..|++++.
T Consensus 272 -~~-----~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 -KY-----ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -CC-----CCceEEEEeccCCCeEEEEec
Confidence 21 127999999999999998876
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-23 Score=224.80 Aligned_cols=242 Identities=21% Similarity=0.439 Sum_probs=200.4
Q ss_pred EEEEEEeC-CCCEEEEEecCCeEEEEECCC---CceEEEecccccCEEEEEEecCCC-EEEEEECCCeEEEEECCCCeeE
Q 002490 12 VKGLSFHS-KRPWILASLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCL 86 (916)
Q Consensus 12 V~~l~~sp-~~~~la~~~~dg~I~lwd~~~---~~~~~~~~~h~~~V~~i~fsp~~~-~l~s~~~dg~I~vWd~~~~~~~ 86 (916)
+..+.|+. +.++||+++.+|.|.+||+.. .+.+..|..|+..|++++||+..+ +|++||.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44567764 567999999999999999976 567778999999999999998654 7899999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEeCC-CCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 87 FTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQ-SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 87 ~~l~~h~~~v~~v~fs~~-~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~ 164 (916)
.++.+....|+.|.|+|. +..++++.+.|.+++||++ ..++...+..|.++|.|+.|+|++.+|++|+.|++|+|||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 999999999999999985 5589999999999999997 45677788999999999999999999999999999999999
Q ss_pred CCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCE-EEEEE--CCCcEEEEECCCCcceee
Q 002490 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL-IVSGA--DDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~--~dg~v~iwd~~~~~~~~~ 241 (916)
.+.+.... ..+ ....+|.++.|-|..++ |++++ .|-.|+|||++..-. +.
T Consensus 250 t~~~~~~~-------------------------~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-P~ 302 (839)
T KOG0269|consen 250 TDSRAKPK-------------------------HTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-PY 302 (839)
T ss_pred cCCCccce-------------------------eEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-cc
Confidence 87554321 111 12467899999998764 55554 477899999987653 57
Q ss_pred eeeecCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q 002490 242 DTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 242 ~~~~~~~~~v~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
.++..|...++.++|.. +...+.+++.||+|..-.+++.
T Consensus 303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 88899999999999965 4567888899988765554443
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=2.7e-22 Score=202.72 Aligned_cols=289 Identities=20% Similarity=0.331 Sum_probs=224.5
Q ss_pred ccccccCCCEEEEEEeCCC--CEEEEEecCCeEEEEECCCC----ceEEEecccccCEEEEEEecCC-CEEEEEECCCeE
Q 002490 3 TKFETKSNRVKGLSFHSKR--PWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKI 75 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~--~~la~~~~dg~I~lwd~~~~----~~~~~~~~h~~~V~~i~fsp~~-~~l~s~~~dg~I 75 (916)
.....+..+|++++|||.. +.+|+|...|+|-+||+.+. .-+..+..|.++|.++.|+|.. ..+.+.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3456789999999999965 58889999999999999533 3356678899999999999955 478899999999
Q ss_pred EEEECCCCee--EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE-EEEEeCCCCceEEEEEecCCC-EEE
Q 002490 76 KVWNYKMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKED-LVV 151 (916)
Q Consensus 76 ~vWd~~~~~~--~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~~p~~~-~l~ 151 (916)
+.-|+++... +.++......+..+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|-.. +++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999986543 333333455678888998888888888888999999986654 667778999999999999765 899
Q ss_pred EEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEE
Q 002490 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (916)
Q Consensus 152 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iw 231 (916)
++|.|++++|||++....+.. .......|...|.++.|||++..|++.+.|..|+||
T Consensus 340 T~s~D~T~kIWD~R~l~~K~s-----------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKAS-----------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred ecccCcceeeeehhhhcCCCC-----------------------cceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 999999999999998776542 122455799999999999998889999999999999
Q ss_pred ECC---CCcceeeeeeecCCC------CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCC-cEE-EEEEec
Q 002490 232 RMN---ETKAWEVDTLRGHMN------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RFW-ILASHP 300 (916)
Q Consensus 232 d~~---~~~~~~~~~~~~~~~------~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~-~l~~sp 300 (916)
|.. .... +..++ .|.. ......|.|+..+|++|-.-..|-|+|-..++.+..+..+.. .|. ...|||
T Consensus 397 dss~~sa~~~-p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 397 DSSCISAKDE-PLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred ecccccccCC-cccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 984 1111 12222 2322 133568999999999999989999999988887777654433 333 467999
Q ss_pred CCCeEEEEeCCCceEE
Q 002490 301 EMNLLAAGHDSGMIVF 316 (916)
Q Consensus 301 ~~~~la~g~~~~~~v~ 316 (916)
-+..+++|+..+..+|
T Consensus 475 ~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIY 490 (498)
T ss_pred cccceeccCCccceEE
Confidence 9987777776554444
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.7e-22 Score=203.48 Aligned_cols=234 Identities=23% Similarity=0.418 Sum_probs=189.8
Q ss_pred ccccCEEEEEEecCCCE-EEEEECCCeEEEEECCCC----------eeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCc
Q 002490 49 EHDGPVRGVHFHKSQPL-FVSGGDDYKIKVWNYKMH----------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQT 116 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~-l~s~~~dg~I~vWd~~~~----------~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~ 116 (916)
.|.+.|+.+..-|+.+. +++.+..+.|.|||+.+. ++-.++.+|.+.-..++|++... .+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 58999999999997765 556678899999998632 12237889998778899998655 8999999999
Q ss_pred EEEEeCCCCe-------EEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccc
Q 002490 117 IRIWNWQSRT-------CISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (916)
Q Consensus 117 I~iwd~~~~~-------~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (916)
|++||++... +...+.+|...|..++|+|.. +++++++.|+.+.|||+++...+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------------ 263 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------------ 263 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC------------------
Confidence 9999997432 345778999999999999954 58899999999999999973111
Q ss_pred cccccceEEEEEeccCCCeeEEEEcC-CCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-CCEEEEE
Q 002490 189 FGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSN 266 (916)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~ 266 (916)
+.....+|...|+|++|+| ++.+||+|+.|++|++||+++... ++.++.+|...|.++.|+|. ...|+++
T Consensus 264 -------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 264 -------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred -------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEec
Confidence 2236678999999999999 456889999999999999998775 58899999999999999995 4678899
Q ss_pred eCCCcEEEEECCCCc--------------eeEEeeccCCcEEEEEEecCCCeEEEE
Q 002490 267 SEDKSIRVWDVTKRT--------------GVQTFRREHDRFWILASHPEMNLLAAG 308 (916)
Q Consensus 267 ~~dg~i~vwd~~~~~--------------~~~~~~~~~~~i~~l~~sp~~~~la~g 308 (916)
+.|+.+.|||+..-. ++..-.+|...|..+.|+|+...+++.
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 999999999987422 234445677788888999988766543
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.9e-21 Score=187.20 Aligned_cols=280 Identities=11% Similarity=0.208 Sum_probs=213.0
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec
Q 002490 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (916)
Q Consensus 12 V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~ 91 (916)
..|+.||+.|.+||+|+.||.|.|||+.|...-+.+.+|..||++++||++|+.|+|+|.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999999887
Q ss_pred CCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEe-----CCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 92 HLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT-----GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 92 h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
...+|+.+.|+|-.. ..+.+-.+..-.+-++..+... .+. ..+..-.+..|.+.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999654 2333222333344444332211 111 011122334688999999999999999999998
Q ss_pred CCcceeccCCccceeeccccccccccccceEEEEEecc-CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc------
Q 002490 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------ 238 (916)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~------ 238 (916)
+.+.... +.-. ...|..+.++..|+.|++-+.|+.||.|+...-..
T Consensus 184 t~e~vas---------------------------~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 184 TLECVAS---------------------------FRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred hheeeee---------------------------eeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 8654331 1112 36788899999999999999999999999763211
Q ss_pred -eeeeeeec--CCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEeeccC-CcEEEEEEecCCCeEEEEeCCCc
Q 002490 239 -WEVDTLRG--HMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 239 -~~~~~~~~--~~~~v~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
.+...+.. ....=.+++|+.+|.+++.++. ...++||....|..++.+.+.. .....+.|+|-...+++-..+.+
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVV 316 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCce
Confidence 00111111 1112346899999999988764 4569999999999999998877 45778999999888888766667
Q ss_pred eEEEecC
Q 002490 314 IVFKLER 320 (916)
Q Consensus 314 ~v~~~~~ 320 (916)
.+|....
T Consensus 317 ~iw~~~~ 323 (405)
T KOG1273|consen 317 YIWAVVQ 323 (405)
T ss_pred EEEEeec
Confidence 7776544
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.6e-22 Score=206.87 Aligned_cols=276 Identities=17% Similarity=0.342 Sum_probs=216.4
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC--EEEEEECC---------
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDD--------- 72 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~--~l~s~~~d--------- 72 (916)
-+.||++.|.||+.+|.|.||++|+.||+|+||.+.+|++++++. ..+.|+||+|+|.+. .||++-..
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 478999999999999999999999999999999999999999886 567899999999765 34443322
Q ss_pred -----------------------CeEEEEECCCC----eeEEEEecCCCCEEEEEEcCCCCEEEEEECC---CcEEEEeC
Q 002490 73 -----------------------YKIKVWNYKMH----RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNW 122 (916)
Q Consensus 73 -----------------------g~I~vWd~~~~----~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d---g~I~iwd~ 122 (916)
..+..|.-... +-+...-.|...|+.+.||..|.||++...+ ..|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 22334432210 1123344588999999999999999987664 57899999
Q ss_pred CCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec
Q 002490 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (916)
Q Consensus 123 ~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (916)
..+.....+....+.|.++.|+|...+|++++ ...|++||+...+... .+..
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvK---------------------------kL~t 605 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVK---------------------------KLLT 605 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHH---------------------------HHhc
Confidence 87777677766678899999999999999888 4579999997744322 2223
Q ss_pred cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC----
Q 002490 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT---- 278 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~---- 278 (916)
....|..++.||.|..|+.|+.|+.+..+|+.-... +..+++-|...+++++||+.-.++++|+.||++.|+--.
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 456788999999999999999999999999976533 377889999999999999999999999999999988422
Q ss_pred --CC---ceeEEeeccCCc----EEEEEEecCCCeEEEEe
Q 002490 279 --KR---TGVQTFRREHDR----FWILASHPEMNLLAAGH 309 (916)
Q Consensus 279 --~~---~~~~~~~~~~~~----i~~l~~sp~~~~la~g~ 309 (916)
.. -++..+++|... |....|||...++.+++
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecC
Confidence 11 234445555443 78888999998887655
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.1e-20 Score=200.82 Aligned_cols=271 Identities=15% Similarity=0.132 Sum_probs=198.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEE-EEEECCCcEEEEeCCCCeEEEEEeCCCCceEEE
Q 002490 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI-VSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (916)
Q Consensus 63 ~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l 141 (916)
+..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|++..+ ++++.++.|++||..+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35789999999999999999999888876544 6789999999876 5667789999999999988877765443 5678
Q ss_pred EEecCCCEEEEE-ECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEE
Q 002490 142 SFHPKEDLVVSA-SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (916)
Q Consensus 142 ~~~p~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 220 (916)
+|+|+++.++++ +.++.+++||+.+.+... .+. +...+..++|+|++.+++
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---------------------------~~~-~~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLA---------------------------EIP-VGVEPEGMAVSPDGKIVV 130 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEe---------------------------Eee-CCCCcceEEECCCCCEEE
Confidence 999999977654 568999999998743221 111 223457899999999999
Q ss_pred EEECCC-cEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEeeccCC-------
Q 002490 221 SGADDR-QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN-SEDKSIRVWDVTKRTGVQTFRREHD------- 291 (916)
Q Consensus 221 ~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~------- 291 (916)
+++.++ .+.+||..+.+. ..... ....+.+++|+|++++++++ ..++.|++||+.+++.+..+..+..
T Consensus 131 ~~~~~~~~~~~~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 207 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEI--VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAV 207 (300)
T ss_pred EEecCCCeEEEEeCCCCeE--EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccC
Confidence 988765 567789887664 33222 22345789999999988655 4689999999999887666542211
Q ss_pred cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEE
Q 002490 292 RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (916)
Q Consensus 292 ~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (916)
....++++|+++++.++.. .++.+.+||..+++....... ++ .+.++
T Consensus 208 ~~~~i~~s~dg~~~~~~~~-------------------------~~~~i~v~d~~~~~~~~~~~~---~~-----~~~~~ 254 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALG-------------------------PANRVAVVDAKTYEVLDYLLV---GQ-----RVWQL 254 (300)
T ss_pred CccceEECCCCCEEEEEcC-------------------------CCCeEEEEECCCCcEEEEEEe---CC-----CcceE
Confidence 1235677777776544321 345688999887765544322 22 78899
Q ss_pred EEcCCCCEEEEEEcCCCCEEEEEEeeCCC
Q 002490 372 SYSPTENAVLICSDVDGGSYELYVIPKDS 400 (916)
Q Consensus 372 ~~sp~~~~llv~~~~~~g~i~i~~~~~~~ 400 (916)
+|+|+|+.++++.. .++.+.+|++....
T Consensus 255 ~~~~~g~~l~~~~~-~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 255 AFTPDEKYLLTTNG-VSNDVSVIDVAALK 282 (300)
T ss_pred EECCCCCEEEEEcC-CCCeEEEEECCCCc
Confidence 99999998776554 56899999987654
No 148
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.1e-20 Score=200.42 Aligned_cols=434 Identities=14% Similarity=0.224 Sum_probs=287.6
Q ss_pred cccccccCCCEEEEEEeCCCC---EEEEEecCCeEEEEECCCCceEEEecccccCEEEE---------------------
Q 002490 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGV--------------------- 57 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~---~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i--------------------- 57 (916)
++.|++|..+++.+.+.|... ++.+++.+|.|++||+..+.+++++..+- +|..+
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccce
Confidence 567899999999999988654 67788999999999999998887775321 11111
Q ss_pred --------------------------------------EEecCCCEEEEEECCCeEEEEECCCCeeEEE----EecCCCC
Q 002490 58 --------------------------------------HFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT----LLGHLDY 95 (916)
Q Consensus 58 --------------------------------------~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~----l~~h~~~ 95 (916)
.+++.|.+.... .+..+.+|+..++..... -..|.-.
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhccc
Confidence 112222111111 123556666665331110 0236667
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCCC--C--eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCccee
Q 002490 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQS--R--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKT 171 (916)
Q Consensus 96 v~~v~fs~~~~~l~s~s~dg~I~iwd~~~--~--~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~ 171 (916)
+++.++||++++++++..||.|.+|.--. + .....+.=|...|+++.|+++|.+|++|+..+.+.+|.+.+++++
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq- 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ- 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-
Confidence 89999999999999999999999996322 1 223455668889999999999999999999999999999987732
Q ss_pred ccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeee------
Q 002490 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR------ 245 (916)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------ 245 (916)
.+..-..+|..+.++|++.+.+....|+.|.+..+.+... ..++.
T Consensus 287 ---------------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--k~tIsgi~~~~ 337 (792)
T KOG1963|consen 287 ---------------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--KSTISGIKPPT 337 (792)
T ss_pred ---------------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh--hhhccCccCCC
Confidence 3344578899999999999999999999999998865443 11111
Q ss_pred -----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc-----------CCcEEEEEEecCCCeEEEEe
Q 002490 246 -----GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-----------HDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 246 -----~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~~~~la~g~ 309 (916)
...+-.+.++++|.-+.++-.+..|.|.+||+.+...+..+... ...++.++.+..|+++++..
T Consensus 338 ~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence 12345677899998888899999999999999988777665421 12345555666677776654
Q ss_pred CCCceEEEecCCcceEEecCCEEEEE-eCCeEEEEEccCCceeeeEEec-CCCCCCCCcCCeEEE-EcCCCCEEEEEEcC
Q 002490 310 DSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIR-RPGSTSLNQSPRTLS-YSPTENAVLICSDV 386 (916)
Q Consensus 310 ~~~~~v~~~~~~~~~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~l~-~sp~~~~llv~~~~ 386 (916)
.. . ...-.. ....+++|-.......-.+..+ ...| ...+.... .+|.....+++.+
T Consensus 418 ~~------~-----------d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH---~~~~vat~~~~~~rs~~~vta~- 476 (792)
T KOG1963|consen 418 AR------I-----------DKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH---GNAFVATIFLNPTRSVRCVTAS- 476 (792)
T ss_pred ee------e-----------hhhhccCceEEEEEEEEcCCcceeEEEEEEecCC---CceeEEEEEecCcccceeEEec-
Confidence 11 0 000000 2356788887764332222211 1122 11333444 4444331334443
Q ss_pred CCCEEEEEEeeCCCCCC-------CccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC-ceEEEeeCCC--cee
Q 002490 387 DGGSYELYVIPKDSIGR-------GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-EVVKKSILPI--AAD 456 (916)
Q Consensus 387 ~~g~i~i~~~~~~~~~~-------~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~-~~~~~i~~~~--~v~ 456 (916)
.||.+++|.+....... +.....-|..++++++|+.||..++.+. +++|.|||..+ ..+....... ++.
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~~~~~~~~ 555 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEGSRNWPIA 555 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhccccccccchH
Confidence 66899999995543311 1112223677899999999999888887 89999999987 3332222211 444
Q ss_pred EEEEeC----CceEEEEECCEEEEEEcCCCeEEEEEE
Q 002490 457 AIFYAG----TGNLLCRAEDRVVIFDLQQRLVLGDLQ 489 (916)
Q Consensus 457 ~l~~s~----~g~~l~~~d~~v~l~d~~~~~~~~~~~ 489 (916)
.+.+.. ++.+.......+.+|++-+......+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s 592 (792)
T KOG1963|consen 556 ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNLS 592 (792)
T ss_pred hHhhhcccccccceeeccCceEehHhhhhhheecchh
Confidence 444433 456666688899999998888777433
No 149
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=6.1e-19 Score=199.58 Aligned_cols=374 Identities=24% Similarity=0.453 Sum_probs=287.7
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc-eEEEeccccc-CEEEEEE-ecCCC-EEEEEEC-CCeEEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-LIDRFDEHDG-PVRGVHF-HKSQP-LFVSGGD-DYKIKVW 78 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~-~~~~~~~h~~-~V~~i~f-sp~~~-~l~s~~~-dg~I~vW 78 (916)
.+..|...+.++.|++.+..++.++.++.+.+|+...+. .+..+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 356899999999999999999999999999999998887 6777776443 7888888 88887 5555455 9999999
Q ss_pred ECCC-CeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEEEEC
Q 002490 79 NYKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (916)
Q Consensus 79 d~~~-~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~ 155 (916)
+... ......+..|...|..+.|+|++..+++++. ++.+++|+...+..+..+.+|...|.++.|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7888889999999999999999998888885 99999999999889999999999999999999998 5556599
Q ss_pred CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002490 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (916)
Q Consensus 156 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~ 235 (916)
|+.|++||....... ...+.+|.... ...|+|++..+++++.|+.+++|+...
T Consensus 220 d~~i~~wd~~~~~~~--------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 220 DGTIRLWDLSTGKLL--------------------------RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred CCcEEEEECCCCcEE--------------------------eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 999999987632221 11456676665 448999998899999999999999987
Q ss_pred CcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee--ccCCcEEEEEEecCCCeEEEEeCCCc
Q 002490 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--REHDRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
... ......+|...+.++.|+|++..+++++.|+.+.+|+..+........ .+...+..+.+.+++..+..+..
T Consensus 273 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 348 (466)
T COG2319 273 SSS-LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--- 348 (466)
T ss_pred CCc-EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec---
Confidence 664 233336788999999999988889889999889999998877666665 55556788888323234444321
Q ss_pred eEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEE
Q 002490 314 IVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (916)
Q Consensus 314 ~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i 393 (916)
.++.+.+|+..... ....... . ..+..+.+++ . .........++.+.+
T Consensus 349 ----------------------~d~~~~~~~~~~~~--~~~~~~~-~-----~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 396 (466)
T COG2319 349 ----------------------DDGTIRLWDLRTGK--PLKTLEG-H-----SNVLSVSFSP-D-GRVVSSGSTDGTVRL 396 (466)
T ss_pred ----------------------CCCcEEeeecCCCc--eeEEecC-C-----ceEEEEEECC-C-CCEEEEecCCCceEE
Confidence 33556677777655 1111111 1 1367888988 6 444443346689999
Q ss_pred EEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC
Q 002490 394 YVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (916)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~ 443 (916)
|+.......... ..+...+....+++++..++.+..++.+.+|+...
T Consensus 397 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 397 WDLSTGSLLRNL---DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EecccCeeeeec---cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 998766543221 11116788889999999999888899999999887
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-21 Score=186.25 Aligned_cols=286 Identities=13% Similarity=0.267 Sum_probs=212.4
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC
Q 002490 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (916)
Q Consensus 54 V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 133 (916)
-.|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++||++|+.|+++|.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999889999999999999999999999999999999999999999998887
Q ss_pred CCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEE
Q 002490 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (916)
Q Consensus 134 h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 212 (916)
.+++|..+.|+|... .+++.-.+..-.+-++....... .+.. .+.. .+..-.+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d---------------~d~d-------ln~sas~~~f 161 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKD---------------DDGD-------LNSSASHGVF 161 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCC---------------Cccc-------cccccccccc
Confidence 678999999999654 33333333334455554321111 1100 0000 0011122368
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------e
Q 002490 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT---------G 282 (916)
Q Consensus 213 ~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---------~ 282 (916)
++.|+++++|...|.+.+++..+.++ +..++-.. ..|..+.++..|+.|+..+.|..||.|+++.-- +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence 99999999999999999999999887 66666655 789999999999999999999999999976211 1
Q ss_pred eEEeec--cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCC
Q 002490 283 VQTFRR--EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (916)
Q Consensus 283 ~~~~~~--~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 360 (916)
.+.++. ..-.-.+++|+.+|.++.+|+. ....+++|.-..|..+.++.-.+ |
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-------------------------~aHaLYIWE~~~GsLVKILhG~k-g 293 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-------------------------RAHALYIWEKSIGSLVKILHGTK-G 293 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccc-------------------------cceeEEEEecCCcceeeeecCCc-h
Confidence 111110 1122346788889998888773 34678899988888877764322 1
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 361 ~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
.....+.|.|-...++.. +.|.+++|.....
T Consensus 294 -----E~l~DV~whp~rp~i~si---~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 294 -----EELLDVNWHPVRPIIASI---ASGVVYIWAVVQV 324 (405)
T ss_pred -----hheeecccccceeeeeec---cCCceEEEEeecc
Confidence 156678899886644433 4489999987543
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.8e-22 Score=214.85 Aligned_cols=276 Identities=20% Similarity=0.340 Sum_probs=215.9
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCC----ceEEEeccc---ccCEEEEEEec-CCCEEEEEECCCeEEEEECCC
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEH---DGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~----~~~~~~~~h---~~~V~~i~fsp-~~~~l~s~~~dg~I~vWd~~~ 82 (916)
...+|+.+++...+++++. ..+.||.+... ++...++.. .-.+..+.|+. +.++|+|++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4566777898888888864 45777776433 222222211 12345677864 567899999999999999986
Q ss_pred ---CeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecC-CCEEEEEECCC
Q 002490 83 ---HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQ 157 (916)
Q Consensus 83 ---~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg 157 (916)
.+.+..+..|...+.++.|++..+ +|++||.||+|++||++......++.+....|..+.|+|. ++.++++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 556677889999999999998665 8899999999999999999988999888899999999995 56999999999
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
.+++||++...+ +...+..|.++|.++.|+|++.+|++|+.|++|+||++.+.+
T Consensus 200 ~lqlWDlRqp~r--------------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 200 YLQLWDLRQPDR--------------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eEEEeeccCchh--------------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 999999988543 334677899999999999999999999999999999999877
Q ss_pred ceeeeeeecCCCCeEEEEEccCCC-EEEEEe--CCCcEEEEECCCC-ceeEEeeccCCcEEEEEEecC-CCeEEEEeCCC
Q 002490 238 AWEVDTLRGHMNNVSCVMFHAKQD-IIVSNS--EDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPE-MNLLAAGHDSG 312 (916)
Q Consensus 238 ~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~~--~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~-~~~la~g~~~~ 312 (916)
..+..++. ...+|.++.|-|..+ +|++++ .|-.|+|||++.. -+..++..|.+.++.++|... ...+.+++.++
T Consensus 254 ~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 254 AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence 65555544 457899999999765 455554 4678999999764 356678888888999999762 33444555444
Q ss_pred ce
Q 002490 313 MI 314 (916)
Q Consensus 313 ~~ 314 (916)
++
T Consensus 333 tv 334 (839)
T KOG0269|consen 333 TV 334 (839)
T ss_pred HH
Confidence 44
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=203.39 Aligned_cols=297 Identities=16% Similarity=0.244 Sum_probs=218.9
Q ss_pred cCCCEEE--EEEeC---CCCEEEEEecCCeEEEEECCCCce------EEEecccccCEEEEEEecCCCEEEEEECCCeEE
Q 002490 8 KSNRVKG--LSFHS---KRPWILASLHSGVIQLWDYRMGTL------IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (916)
Q Consensus 8 h~~~V~~--l~~sp---~~~~la~~~~dg~I~lwd~~~~~~------~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~ 76 (916)
|.-+++- ..|++ ....|+.+..+|.|.++|.+.... +..+..|...|..+.|-|....|++++.|.+++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence 3444444 56665 346889999999999999764432 234457999999999999878999999999999
Q ss_pred EEECCCCeeEEE--EecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCe--------------------E------
Q 002490 77 VWNYKMHRCLFT--LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT--------------------C------ 127 (916)
Q Consensus 77 vWd~~~~~~~~~--l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~--------------------~------ 127 (916)
+||+++.++... +.||...|.+++|.+..+ .|++|+.||.|.|||++-.. +
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999998877 889999999999999776 78899999999999986321 0
Q ss_pred -EEEEeCCCCceEE---EEEecCCCEEEEEEC-CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec
Q 002490 128 -ISVLTGHNHYVMC---ASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (916)
Q Consensus 128 -~~~~~~h~~~v~~---l~~~p~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (916)
+.....+...|.+ +.+..|...|++++. |+.|+|||++................ . .-..
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~--------------~--t~sk 269 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY--------------P--THSK 269 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCc--------------c--Cccc
Confidence 1111223344444 455568889999988 99999999988654332211000000 0 0011
Q ss_pred cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCC--eEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
...++.++.....|.+|.+.+.|+.|++|++.+....++..+.++... -..-..+|++.++++|+.|....+|.+.+.
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc
Confidence 245788888888899998888899999999998776556555554332 122356899999999999999999999876
Q ss_pred ce-eEEeeccCCcEEEEEEecC--CCeEEEEeCCCceEEEecC
Q 002490 281 TG-VQTFRREHDRFWILASHPE--MNLLAAGHDSGMIVFKLER 320 (916)
Q Consensus 281 ~~-~~~~~~~~~~i~~l~~sp~--~~~la~g~~~~~~v~~~~~ 320 (916)
+. ...+.+|.-.|++++|.|. ...+++..|.++.+|.+..
T Consensus 350 e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 350 EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 53 4445677788999999874 5566666677888888854
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=4.6e-20 Score=192.64 Aligned_cols=436 Identities=16% Similarity=0.215 Sum_probs=277.9
Q ss_pred eeEEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeE--E----EEEeCCCCceEEEEEecCCCEEEEEECC
Q 002490 84 RCLFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTC--I----SVLTGHNHYVMCASFHPKEDLVVSASLD 156 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~v~fs~~-~~~l~s~s~dg~I~iwd~~~~~~--~----~~~~~h~~~v~~l~~~p~~~~l~s~s~d 156 (916)
+.+..+.+|.+.|+.+.|+|- ..+|++||.|..|+||.+..+-. + ..+.+.+-.|-|+.|||..+-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 345667899999999999984 34899999999999999974321 1 1233445578899999988766666678
Q ss_pred CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002490 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 157 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~ 236 (916)
|++.+||+.+.+.. ..+.+|...|.++.|+.||.++++++.|++|+|||.+..
T Consensus 150 g~v~i~D~stqk~~---------------------------~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~ 202 (1012)
T KOG1445|consen 150 GSVYITDISTQKTA---------------------------VELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS 202 (1012)
T ss_pred ceEEEEEcccCcee---------------------------ecccCCchhhhccccccCCceEeeecCCcceEEeCCccC
Confidence 99999999886643 367789999999999999999999999999999998865
Q ss_pred cceeeeeeecCCCC-eEEEEEccCCCEEEEEeCC----CcEEEEECCCC-ceeEEeecc-CCcEEEEEEecCCCeEEEEe
Q 002490 237 KAWEVDTLRGHMNN-VSCVMFHAKQDIIVSNSED----KSIRVWDVTKR-TGVQTFRRE-HDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 237 ~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~~~d----g~i~vwd~~~~-~~~~~~~~~-~~~i~~l~~sp~~~~la~g~ 309 (916)
-. ++.+..+|.+. =..+.|.-+...|++.+-+ ..|++||.+.. .++.++... ...+..--+.||.+++..++
T Consensus 203 ~~-piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG 281 (1012)
T KOG1445|consen 203 ME-PIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG 281 (1012)
T ss_pred CC-ccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec
Confidence 43 36777888664 3457787666677776654 45899998753 344443322 22344455677777666554
Q ss_pred CCCce--EEEecCCcc----------------------------------------------------------------
Q 002490 310 DSGMI--VFKLERERP---------------------------------------------------------------- 323 (916)
Q Consensus 310 ~~~~~--v~~~~~~~~---------------------------------------------------------------- 323 (916)
.+... .+.+....|
T Consensus 282 KG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfP 361 (1012)
T KOG1445|consen 282 KGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFP 361 (1012)
T ss_pred CCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCc
Confidence 33333 333322222
Q ss_pred -----------------------------------------------------------eEEe--------cC-------
Q 002490 324 -----------------------------------------------------------AFAV--------SG------- 329 (916)
Q Consensus 324 -----------------------------------------------------------~~s~--------~~------- 329 (916)
...+ .+
T Consensus 362 eT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~ 441 (1012)
T KOG1445|consen 362 ETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQ 441 (1012)
T ss_pred cccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccc
Confidence 0000 00
Q ss_pred -----------CEEEEE----eCC------------------------eEE--------EE---------EccCCceeee
Q 002490 330 -----------DSLFYA----KDR------------------------FLR--------YY---------EFSTQKDTQV 353 (916)
Q Consensus 330 -----------~~l~~~----~d~------------------------~i~--------~~---------d~~~~~~~~~ 353 (916)
..+.+. ..+ .+. +- ...-++.++.
T Consensus 442 ~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe 521 (1012)
T KOG1445|consen 442 EQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPE 521 (1012)
T ss_pred cCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCC
Confidence 000000 000 000 00 0000000000
Q ss_pred --------------------------------EEecC----CCCC-CCCc---------CCeEEEEcCCCCEEEEEEcCC
Q 002490 354 --------------------------------IPIRR----PGST-SLNQ---------SPRTLSYSPTENAVLICSDVD 387 (916)
Q Consensus 354 --------------------------------~~~~~----~~~~-~~~~---------~i~~l~~sp~~~~llv~~~~~ 387 (916)
-.++. .+|. .|.. +-.+=-|+.+...++|--.+.
T Consensus 522 ~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~ 601 (1012)
T KOG1445|consen 522 QPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGS 601 (1012)
T ss_pred CCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCC
Confidence 00000 0000 0000 111123444556677665556
Q ss_pred CCEEEEEEeeCCCCCCC-ccccccccCceeEEEEEeC-CcEEEEEcCCCEEEEEccCC--------ceEEEeeCCC-cee
Q 002490 388 GGSYELYVIPKDSIGRG-DSVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKN--------EVVKKSILPI-AAD 456 (916)
Q Consensus 388 ~g~i~i~~~~~~~~~~~-~~~~~~~~~~i~~~~fs~~-~~~l~~~~~d~~I~iwdl~~--------~~~~~i~~~~-~v~ 456 (916)
+|.|.||++.......- ..+.-.....|+.+.|.|= ...|+.++.||.|++|.+.. ..-+.+..|. .|+
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 79999999976532110 0012223445889999974 46777777799999999872 2234455555 899
Q ss_pred EEEEeCC-ceEEEE--ECCEEEEEEcCCCeEEEEEEc--CCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcceEEEee--
Q 002490 457 AIFYAGT-GNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLS-KHAIIIASKKLVHQCTLHE-- 528 (916)
Q Consensus 457 ~l~~s~~-g~~l~~--~d~~v~l~d~~~~~~~~~~~~--~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~~~~~~~-- 528 (916)
++.|.|- ..+|++ .|.+|++||+.+++....+.+ ..|..++|||||+.+|.+. +.++++|++....-.-...
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 9999997 455554 799999999999998888874 7899999999999999988 6799999987654221111
Q ss_pred --eeeEEEEEEecCCeEEEEc
Q 002490 529 --TIRVKSGAWDDNGVFIYTT 547 (916)
Q Consensus 529 --~~~i~s~~w~~~~~~l~~t 547 (916)
..|--.+.|..+|.++..+
T Consensus 762 pvgtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVV 782 (1012)
T ss_pred CccCcceeEEEEecCcEEEEe
Confidence 2233456788888877663
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6e-21 Score=183.55 Aligned_cols=249 Identities=18% Similarity=0.326 Sum_probs=195.4
Q ss_pred cccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----ceEEEecccccCEEEEEEec--CCCEEEEEECCCeEEEEE
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~----~~~~~~~~h~~~V~~i~fsp--~~~~l~s~~~dg~I~vWd 79 (916)
.+|.+-|+++.|.+.|+++|+++.|++|.|||.++. .+-...+.|++.|..|.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468899999999999999999999999999996543 45566789999999999954 588999999999999997
Q ss_pred CC---------CCeeEEEEecCCCCEEEEEEcCC--CCEEEEEECCCcEEEEeCCCC------eEEEEEe-------CCC
Q 002490 80 YK---------MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSR------TCISVLT-------GHN 135 (916)
Q Consensus 80 ~~---------~~~~~~~l~~h~~~v~~v~fs~~--~~~l~s~s~dg~I~iwd~~~~------~~~~~~~-------~h~ 135 (916)
=. ......++......|+.+.|.|. |-.+++++.||++|||+...- +....+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52 11234567778889999999985 558999999999999986532 2222222 356
Q ss_pred CceEEEEEecC---CCEEEEEECC-----CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCe
Q 002490 136 HYVMCASFHPK---EDLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (916)
Q Consensus 136 ~~v~~l~~~p~---~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (916)
.+..|+.|+|. ..+|++|+.+ +.+.||.......+.. ..-.+.+|..+|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~-----------------------kva~L~d~~dpI 226 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL-----------------------KVAELPDHTDPI 226 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee-----------------------eehhcCCCCCcc
Confidence 67889999975 3588888866 4788888755432211 122556899999
Q ss_pred eEEEEcCCC----CEEEEEECCCcEEEEECCCCc------------------ceeeeeeecCCCCeEEEEEccCCCEEEE
Q 002490 208 NWAAFHPTL----PLIVSGADDRQVKLWRMNETK------------------AWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (916)
Q Consensus 208 ~~~~~~p~~----~~l~~~~~dg~v~iwd~~~~~------------------~~~~~~~~~~~~~v~~l~~sp~~~~l~s 265 (916)
+.++|.|+- .+|++++.|| |+||.+.... ...+..+.+|.+.|..+.|+-.|..|++
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 999999963 4799999999 9999987311 1124556789999999999999999999
Q ss_pred EeCCCcEEEEECC
Q 002490 266 NSEDKSIRVWDVT 278 (916)
Q Consensus 266 ~~~dg~i~vwd~~ 278 (916)
.|.||.||+|...
T Consensus 306 tGdDG~VRLWkan 318 (361)
T KOG2445|consen 306 TGDDGCVRLWKAN 318 (361)
T ss_pred cCCCceeeehhhh
Confidence 9999999999754
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=7.6e-21 Score=197.90 Aligned_cols=295 Identities=20% Similarity=0.320 Sum_probs=221.5
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCC--EEEEEECCCcEEEEe
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWN 121 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~--~l~s~s~dg~I~iwd 121 (916)
-..+.+|++.|++|..+|.|.+|++|++||+|+||.+.+++|+.+.. -.+.|+|++|+|.+. .||++-... +.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 34567999999999999999999999999999999999999999987 466899999999765 444443332 44433
Q ss_pred CCCC-------------------------------------eEEEEEeCCCCceEEEEEecCCCEEEEEECC---CeEEE
Q 002490 122 WQSR-------------------------------------TCISVLTGHNHYVMCASFHPKEDLVVSASLD---QTVRV 161 (916)
Q Consensus 122 ~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d---g~v~v 161 (916)
..-| .-++..-.|...|..+.||..|++|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0123334588899999999999999987754 56888
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceee
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~ 241 (916)
++++..+... .+....+.|.++.|+|..++|++++ .+.|+|||+..... +
T Consensus 551 HQLSK~~sQ~---------------------------PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqel--v 600 (733)
T KOG0650|consen 551 HQLSKRKSQS---------------------------PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQEL--V 600 (733)
T ss_pred EecccccccC---------------------------chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHH--H
Confidence 8887644321 2333457789999999999999987 57899999988665 6
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEecCCCeEEEEeCCCc-eEEEec
Q 002490 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGM-IVFKLE 319 (916)
Q Consensus 242 ~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~-~v~~~~ 319 (916)
..+......|++++.||.|..|+.++.|+.+..+|+.-. ++.++++.|...++++++|+.-.++++|++++. +||.
T Consensus 601 KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh-- 678 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH-- 678 (733)
T ss_pred HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe--
Confidence 666666778999999999999999999999999999754 567788889999999999999999999997554 3332
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEE--ccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEE
Q 002490 320 RERPAFAVSGDSLFYAKDRFLRYYE--FSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (916)
Q Consensus 320 ~~~~~~s~~~~~l~~~~d~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~ 395 (916)
+ .+|+ +.+...+++..++.+.... ...|....|+|...+++.++ .+|++++|.
T Consensus 679 ------------------g--~VY~Dl~qnpliVPlK~L~gH~~~~-~~gVLd~~wHP~qpWLfsAG--Ad~tirlfT 733 (733)
T KOG0650|consen 679 ------------------G--MVYNDLLQNPLIVPLKRLRGHEKTN-DLGVLDTIWHPRQPWLFSAG--ADGTIRLFT 733 (733)
T ss_pred ------------------e--eeehhhhcCCceEeeeeccCceeec-ccceEeecccCCCceEEecC--CCceEEeeC
Confidence 1 1222 2223334444444332211 22577788999999877655 357999983
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=205.42 Aligned_cols=230 Identities=16% Similarity=0.252 Sum_probs=193.3
Q ss_pred ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC-eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE
Q 002490 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~-~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~ 127 (916)
.|...-+.|+|.|+|.++++++.||.|++|+..+- ..-.++..+...|.+++... .+|++++.+++|.+|...+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCCc
Confidence 58888999999999999999999999999997655 44444444777787776654 4899999999999999998877
Q ss_pred EEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCe
Q 002490 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (916)
Q Consensus 128 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (916)
-..+....-++.+++|+.+|++++.||.|-.|++.+..... ....+.+|..+|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---------------------------~~~~lrgh~apV 141 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---------------------------QEKVLRGHDAPV 141 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc---------------------------hheeecccCCce
Confidence 66666667889999999999999999999999999986644 335789999999
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeec--------CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG--------HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 208 ~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
.++.|+|.+++|++.+-||.|++|++.++.. ..++.+ ....+..++|+|++..++..+.|+.|.+|+...
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchh--hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999999999999999999999998875 333322 134567799999988888889999999999999
Q ss_pred CceeEEeec--cCCcEEEEEEecCCCeEEEEe
Q 002490 280 RTGVQTFRR--EHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 280 ~~~~~~~~~--~~~~i~~l~~sp~~~~la~g~ 309 (916)
......++. +...+..++|+|+|.+||+++
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 888777764 234489999999999999987
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.9e-21 Score=188.34 Aligned_cols=244 Identities=25% Similarity=0.428 Sum_probs=190.1
Q ss_pred ccccCEEEEEEecC--CCEEEEEECCCeEEEEECC----------------CCeeEEEEecCCCCEEEEEEcCCC-CEEE
Q 002490 49 EHDGPVRGVHFHKS--QPLFVSGGDDYKIKVWNYK----------------MHRCLFTLLGHLDYIRTVQFHHEY-PWIV 109 (916)
Q Consensus 49 ~h~~~V~~i~fsp~--~~~l~s~~~dg~I~vWd~~----------------~~~~~~~l~~h~~~v~~v~fs~~~-~~l~ 109 (916)
.|.+.++.+.-++- ..+.++-++.|.|+||++. ..++++++.+|...=+.++|||-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 57777777777664 4567777899999999984 246788999999999999999932 2588
Q ss_pred EEECCCcEEEEeCCCCeEE---EEEeCCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeecccc
Q 002490 110 SASDDQTIRIWNWQSRTCI---SVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (916)
Q Consensus 110 s~s~dg~I~iwd~~~~~~~---~~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 185 (916)
+|..-+.|++|...++.-. ..+.+|...|-.++|+|..+ .|++||.||+|+|||++...++..
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~------------- 295 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA------------- 295 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce-------------
Confidence 8888889999998876543 35668999999999999765 899999999999999998755431
Q ss_pred ccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc-eeeeeeecCCCCeEEEEEccC-CCEE
Q 002490 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK-QDII 263 (916)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~-~~~l 263 (916)
.....|.+.|+.+.|+..-++|++|++||+++|||++.-+. .++.++..|..+|+++.|+|. ...|
T Consensus 296 ------------~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 296 ------------VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred ------------eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 23478999999999999999999999999999999987553 247789999999999999994 4678
Q ss_pred EEEeCCCcEEEEECCCCce----------------eEEeecc--CCcEEEEEEecCCC-eEEEEeCCCceEEE
Q 002490 264 VSNSEDKSIRVWDVTKRTG----------------VQTFRRE--HDRFWILASHPEMN-LLAAGHDSGMIVFK 317 (916)
Q Consensus 264 ~s~~~dg~i~vwd~~~~~~----------------~~~~~~~--~~~i~~l~~sp~~~-~la~g~~~~~~v~~ 317 (916)
++++.|..|.+||+.-..- .+.+-.| ...+..+.||++-. ++++..-+|+-||+
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 8889999999999863211 1111122 33466788888654 45555566666664
No 158
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=2.7e-21 Score=196.71 Aligned_cols=284 Identities=14% Similarity=0.185 Sum_probs=227.7
Q ss_pred CCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEE
Q 002490 133 GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (916)
Q Consensus 133 ~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 212 (916)
.|..-|.+++.+...+.+++|+ .|.|+|||+.....+.... .........-|.++..
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvs----------------------qLdcl~rdnyiRSckL 473 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVS----------------------QLDCLNRDNYIRSCKL 473 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccc----------------------cccccCcccceeeeEe
Confidence 4777788888988888999988 6779999998753322110 0111223566889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc
Q 002490 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (916)
Q Consensus 213 ~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 292 (916)
+|+|+.|++|+.-.++.|||+..........+....-....++.+||.+..+++..||.|.|||+.+...++.|++|.+.
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999999999999999988765323333333345677999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEE
Q 002490 293 FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLS 372 (916)
Q Consensus 293 i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 372 (916)
..+|..+++|..|-+|+ -|++++.||+..++.+....+.. .|.++.
T Consensus 554 ascIdis~dGtklWTGG--------------------------lDntvRcWDlregrqlqqhdF~S--------QIfSLg 599 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGG--------------------------LDNTVRCWDLREGRQLQQHDFSS--------QIFSLG 599 (705)
T ss_pred ceeEEecCCCceeecCC--------------------------Cccceeehhhhhhhhhhhhhhhh--------hheecc
Confidence 99999999998888877 57889999999987766554443 899999
Q ss_pred EcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC-CceEEEeeC
Q 002490 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSIL 451 (916)
Q Consensus 373 ~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~ 451 (916)
++|++.++++.- +++.+.+....+.... .+..|...|.++.|.+-|+++++.+.|+.+..|... +..+...+.
T Consensus 600 ~cP~~dWlavGM--ens~vevlh~skp~ky----qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 600 YCPTGDWLAVGM--ENSNVEVLHTSKPEKY----QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred cCCCccceeeec--ccCcEEEEecCCccce----eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 999999998866 4567777666544332 456788999999999999999999999999999998 666655665
Q ss_pred CCceeEEEEeCCceEEEE--ECCEEEEEEc
Q 002490 452 PIAADAIFYAGTGNLLCR--AEDRVVIFDL 479 (916)
Q Consensus 452 ~~~v~~l~~s~~g~~l~~--~d~~v~l~d~ 479 (916)
...|.+..+|.|.+++++ +++.-.||.+
T Consensus 674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 669999999999999999 4557777764
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.1e-20 Score=191.09 Aligned_cols=299 Identities=17% Similarity=0.279 Sum_probs=219.4
Q ss_pred CCCceEEEecccccCEEEEEEecCCC--EEEEEECCCeEEEEECCC----CeeEEEEecCCCCEEEEEEcCCCC-EEEEE
Q 002490 39 RMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWNYKM----HRCLFTLLGHLDYIRTVQFHHEYP-WIVSA 111 (916)
Q Consensus 39 ~~~~~~~~~~~h~~~V~~i~fsp~~~--~l~s~~~dg~I~vWd~~~----~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~ 111 (916)
.+-......+.|.++|++++|||..+ ++++|..-|+|-+||+.+ ...+..+..|..+|.++.|+|.+. .+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 33344556667899999999999765 788888899999999952 234566778999999999999654 89999
Q ss_pred ECCCcEEEEeCCCCeEEEEEe--CCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeecccccccc
Q 002490 112 SDDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (916)
Q Consensus 112 s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (916)
|.||+|+.-|++....-..+. .....+.++.|+.+...++.+..=|...+||.+......
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~------------------ 315 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY------------------ 315 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc------------------
Confidence 999999999998765433333 245567788888888888888888899999998855422
Q ss_pred ccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcce--eeeeeecCCCCeEEEEEccCCCEEEEE
Q 002490 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (916)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~ 266 (916)
..+.-|...|+.++++|-.+ +|++++.|++++|||++.-... ++.....|...|.++.|||.+-.|++.
T Consensus 316 --------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT 387 (498)
T KOG4328|consen 316 --------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT 387 (498)
T ss_pred --------hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee
Confidence 24556888999999999765 6889999999999999864332 234556799999999999988889999
Q ss_pred eCCCcEEEEECC----CCceeEEeeccCC-----cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeC
Q 002490 267 SEDKSIRVWDVT----KRTGVQTFRREHD-----RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (916)
Q Consensus 267 ~~dg~i~vwd~~----~~~~~~~~~~~~~-----~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d 337 (916)
+.|..|+|||.. ...+..++...+. ......|.|+.+++++|. ..
T Consensus 388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~--------------------------~~ 441 (498)
T KOG4328|consen 388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR--------------------------YP 441 (498)
T ss_pred ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec--------------------------cC
Confidence 999999999983 4444444442221 133567889888888876 33
Q ss_pred CeEEEEEccCCceeeeEEecCCCCCCCCcCC-eEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP-RTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 338 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
+.|-++|-..++.+..+..+. . ..| .-..|+|-+..++..++ ..|.+.+|.-
T Consensus 442 r~IDv~~~~~~q~v~el~~P~--~----~tI~~vn~~HP~~~~~~aG~~-s~Gki~vft~ 494 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMVCELHDPE--S----STIPSVNEFHPMRDTLAAGGN-SSGKIYVFTN 494 (498)
T ss_pred cceeEEcCCCCEEeeeccCcc--c----cccccceeecccccceeccCC-ccceEEEEec
Confidence 557788877766443322221 1 133 33589998776655544 5577777754
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=3.8e-20 Score=179.59 Aligned_cols=305 Identities=17% Similarity=0.329 Sum_probs=216.7
Q ss_pred ccccCCCEEEEEEeC----CC-CEEEEEecCCeEEEEECCCC---ceEEEec--ccccCEEEEEEecC----CCEEEEEE
Q 002490 5 FETKSNRVKGLSFHS----KR-PWILASLHSGVIQLWDYRMG---TLIDRFD--EHDGPVRGVHFHKS----QPLFVSGG 70 (916)
Q Consensus 5 l~~h~~~V~~l~~sp----~~-~~la~~~~dg~I~lwd~~~~---~~~~~~~--~h~~~V~~i~fsp~----~~~l~s~~ 70 (916)
.+.|..+|.+++|++ +. ..+|+++ ...+.+|..... +.++++. .|+.....++|+-+ .+++|.||
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 467889999999986 22 3556655 457889987544 3344442 47788888999643 57899999
Q ss_pred CCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEE---eCCCCceEEEEEecC
Q 002490 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPK 146 (916)
Q Consensus 71 ~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~~p~ 146 (916)
.-|.|+|.|+.++++...+.+|...|..+.|+|+.+ +++++|.|.+|++||+++..|+..+ .+|...|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 999999999999999999999999999999999864 8899999999999999999999987 479999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE-EEeccCCCeeEEEEcCCCCEEEEEECC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d 225 (916)
|.+|++++.|.++++|++...+..........+..................+ ...-|...|-|+.|-. +++++-+-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccC
Confidence 9999999999999999998544332211110000000000000000000111 3345778888888875 688888889
Q ss_pred CcEEEEECC-CCcc-----------eeeeeeecCCCCeEEE--EEccCCCEEEEEeCCCcEEEEECCCCcee--EEe--e
Q 002490 226 RQVKLWRMN-ETKA-----------WEVDTLRGHMNNVSCV--MFHAKQDIIVSNSEDKSIRVWDVTKRTGV--QTF--R 287 (916)
Q Consensus 226 g~v~iwd~~-~~~~-----------~~~~~~~~~~~~v~~l--~~sp~~~~l~s~~~dg~i~vwd~~~~~~~--~~~--~ 287 (916)
+.|..|..- -.+. ..+..+.-....|+-+ +|.|-++.|+.|...|.|.+||++...+. .++ .
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999999872 1111 0112222233344444 45677889999999999999999876652 112 2
Q ss_pred ccCCcEEEEEEecCCCeEEEEeCCC
Q 002490 288 REHDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 288 ~~~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
.....|...+|+.++.+++..++++
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCC
Confidence 2345688888998888877666543
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=174.96 Aligned_cols=249 Identities=19% Similarity=0.301 Sum_probs=188.4
Q ss_pred cccccCEEEEEEecCCCEEEEEECCCeEEEEECC----CCeeEEEEecCCCCEEEEEEcC--CCCEEEEEECCCcEEEEe
Q 002490 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK----MHRCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 48 ~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~----~~~~~~~l~~h~~~v~~v~fs~--~~~~l~s~s~dg~I~iwd 121 (916)
.+|..-|.++.|.+.|+++|+|+.|++|+|||.+ +..+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3688999999999999999999999999999965 3456677789999999999975 478999999999999997
Q ss_pred CCC---------CeEEEEEeCCCCceEEEEEecC--CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccc
Q 002490 122 WQS---------RTCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (916)
Q Consensus 122 ~~~---------~~~~~~~~~h~~~v~~l~~~p~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (916)
-+. .....++....+.|+.+.|.|. |-.+++++.||++|||+.-..-....-+....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~---------- 159 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ---------- 159 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh----------
Confidence 521 1234566677889999999996 4589999999999999975432211100000000
Q ss_pred cccceEEEEEeccCCCeeEEEEcCC---CCEEEEEECC-----CcEEEEECCCC--cceeeeeeecCCCCeEEEEEccC-
Q 002490 191 GVDAVVKYVLEGHDRGVNWAAFHPT---LPLIVSGADD-----RQVKLWRMNET--KAWEVDTLRGHMNNVSCVMFHAK- 259 (916)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d-----g~v~iwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~- 259 (916)
.+......+..+..|+.|+|. .++|++|+.+ +.++||..... +...+.++.+|..+|+.++|.|+
T Consensus 160 ----~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 160 ----NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred ----hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 001122345667789999984 4688888866 47888876654 33457788899999999999995
Q ss_pred ---CCEEEEEeCCCcEEEEECCCC--------------------ceeEEeeccCCcEEEEEEecCCCeEEEEeCC
Q 002490 260 ---QDIIVSNSEDKSIRVWDVTKR--------------------TGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (916)
Q Consensus 260 ---~~~l~s~~~dg~i~vwd~~~~--------------------~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~ 311 (916)
-.+|++++.|| |+||.+... +.+..+..|++.+|.+.|.-.|..|++.+++
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC
Confidence 35899999999 999998731 1244466788899999999999998876643
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.3e-20 Score=190.18 Aligned_cols=238 Identities=18% Similarity=0.335 Sum_probs=184.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCce---------------------EEEecccccCEEEEEEecC-CCEEEEEECCCeEEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMGTL---------------------IDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKV 77 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~~---------------------~~~~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~v 77 (916)
.|+++|+|+.+..|.|||+.-... -..-.+|+..|.++.|+.. ...|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367999999999999999742110 0012368888999999874 458999999999999
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEEEEC
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s~s~ 155 (916)
||+.++++..++..|.+.|.++.|+|..+ .|++|+.|++|.+.|.+........-...+.|-.++|+|... .+++++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999999999999999999999654 899999999999999984322222222457789999998654 7788889
Q ss_pred CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECC
Q 002490 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMN 234 (916)
Q Consensus 156 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~ 234 (916)
||+|+-+|++...+ +.+.+..|..+|.++++++.-+ ++++++.|+.|++|++.
T Consensus 351 dG~v~~~D~R~~~~--------------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGK--------------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred CceEEeeecCCCCC--------------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 99999999998542 4568899999999999998654 68889999999999988
Q ss_pred CCcceeeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCcee
Q 002490 235 ETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGV 283 (916)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~ 283 (916)
......+..-.-.-+...|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 405 ~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 405 VDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 766422222211223466777777654 5677788888999999876544
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=176.00 Aligned_cols=271 Identities=20% Similarity=0.330 Sum_probs=209.4
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCC------------ceEEEec-ccccCEEEEEEe-------cCCCEEEEEE
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMG------------TLIDRFD-EHDGPVRGVHFH-------KSQPLFVSGG 70 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~------------~~~~~~~-~h~~~V~~i~fs-------p~~~~l~s~~ 70 (916)
-.+++.|||||..|++-++|..+.+|++... +...+++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3567899999999999999999999997421 1111121 123457777774 6778999999
Q ss_pred CCCeEEEEECCCCeeEEEEec--CCC---CEEEEEEcCCCCEEEEEECCCcEEEEeC-CCCeEEEEE-------eCCCCc
Q 002490 71 DDYKIKVWNYKMHRCLFTLLG--HLD---YIRTVQFHHEYPWIVSASDDQTIRIWNW-QSRTCISVL-------TGHNHY 137 (916)
Q Consensus 71 ~dg~I~vWd~~~~~~~~~l~~--h~~---~v~~v~fs~~~~~l~s~s~dg~I~iwd~-~~~~~~~~~-------~~h~~~ 137 (916)
.+.-|.+||.-+|+...++.+ |.+ .-.+++|+|||.+|++|. ...|+++|+ +.|+.-... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999988776653 333 346899999999988776 578999998 454322211 233677
Q ss_pred eEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC
Q 002490 138 VMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (916)
Q Consensus 138 v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 216 (916)
+.|++|+|-.. .+++++..+++-++.-...+ +.+.+.+|.++|+.+.|+++|
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------------------pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------------------PLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCC---------------------------ceeeecccCCCeeeEEeccCc
Confidence 89999999655 89999988888888766544 345777999999999999999
Q ss_pred CEEEEEEC-CCcEEEEECCCCcceeeeeeecCCC-CeEE--EEEccCCCEEEEEeCCCcEEEEECCC-CceeEEeeccCC
Q 002490 217 PLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMN-NVSC--VMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREHD 291 (916)
Q Consensus 217 ~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~-~v~~--l~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~ 291 (916)
+.|.+|+. +-.|-.||++..+. ++..+..|.. .-.. ....|++++|++|+.||.|++||+++ +..+..+..+.+
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred CeecccccCCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 99999985 67899999987654 3555665554 2223 45568999999999999999999998 666777888888
Q ss_pred cEEEEEEecCCCeEEEEeC
Q 002490 292 RFWILASHPEMNLLAAGHD 310 (916)
Q Consensus 292 ~i~~l~~sp~~~~la~g~~ 310 (916)
.+..++++|--.++|+++.
T Consensus 342 ~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccceecCcccceeeeccC
Confidence 9999999999888887663
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=5.5e-20 Score=181.58 Aligned_cols=244 Identities=21% Similarity=0.337 Sum_probs=187.0
Q ss_pred cccCCCEEEEEEeCC--CCEEEEEecCCeEEEEECCC----------------CceEEEecccccCEEEEEEecC-CCEE
Q 002490 6 ETKSNRVKGLSFHSK--RPWILASLHSGVIQLWDYRM----------------GTLIDRFDEHDGPVRGVHFHKS-QPLF 66 (916)
Q Consensus 6 ~~h~~~V~~l~~sp~--~~~la~~~~dg~I~lwd~~~----------------~~~~~~~~~h~~~V~~i~fsp~-~~~l 66 (916)
-.|.+.++.+.-++- ..+.|+-+..|.|+||++.. .+.+.++.+|.+.=.+++|||- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 356666776666664 45666777899999999742 2567788899999999999993 2358
Q ss_pred EEEECCCeEEEEECCCCeeE---EEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCC---eEEEEEeCCCCceE
Q 002490 67 VSGGDDYKIKVWNYKMHRCL---FTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVM 139 (916)
Q Consensus 67 ~s~~~dg~I~vWd~~~~~~~---~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~ 139 (916)
+||.--+.|++|...++.-. ..+.+|...|-.++|||.. ..|++||.||+|+|||++++ .++.+ +.|++.|.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 88888889999999887654 3456899999999999965 48999999999999999987 44444 78999999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-CCE
Q 002490 140 CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPL 218 (916)
Q Consensus 140 ~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~ 218 (916)
.+.|+....+|++|+.||+++|||++..+... +.-.+..|..+|+++.|+|. ...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~------------------------pVA~fk~Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQ------------------------PVATFKYHKAPITSIEWHPHEDSV 362 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCC------------------------cceeEEeccCCeeEEEeccccCce
Confidence 99999988899999999999999999865432 33467789999999999995 457
Q ss_pred EEEEECCCcEEEEECCCCcc--------------eeeeeeecC--CCCeEEEEEccCC-CEEEEEeCCCcEEEE
Q 002490 219 IVSGADDRQVKLWRMNETKA--------------WEVDTLRGH--MNNVSCVMFHAKQ-DIIVSNSEDKSIRVW 275 (916)
Q Consensus 219 l~~~~~dg~v~iwd~~~~~~--------------~~~~~~~~~--~~~v~~l~~sp~~-~~l~s~~~dg~i~vw 275 (916)
|++++.|.+|.+||+....- .+.+.+--| ...+..+.||++- .++++.+.|| +.||
T Consensus 363 iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 88888999999999864322 011122223 2346678888854 3677777777 4444
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.6e-17 Score=185.06 Aligned_cols=369 Identities=23% Similarity=0.409 Sum_probs=277.4
Q ss_pred EecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe-eEEEEecCCC-CEEEEEE-cCCCC-EEEEEEC-CCcEEEE
Q 002490 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-CLFTLLGHLD-YIRTVQF-HHEYP-WIVSASD-DQTIRIW 120 (916)
Q Consensus 46 ~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~-~~~~l~~h~~-~v~~v~f-s~~~~-~l~s~s~-dg~I~iw 120 (916)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456799999999999999999999999999999999876 6777776443 7777777 78887 5555455 8999999
Q ss_pred eCCC-CeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 121 NWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 121 d~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
+... ......+..|...|.++.|+|++..+++++. |+.+++|++.... ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~ 192 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLS 192 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEE
Confidence 9988 7888899999999999999999998888885 9999999998732 223
Q ss_pred EEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeee-eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002490 199 VLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD-TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (916)
Q Consensus 199 ~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd 276 (916)
.+.+|...+.+++|+|+++ .+++++.|+.|++||...+.. .. .+.+|.... ...|+|++.++++++.|+.+++|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL--LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD 269 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE--EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence 5566999999999999998 555558999999998886654 44 577887775 448999999999999999999999
Q ss_pred CCCCce-eEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 277 VTKRTG-VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 277 ~~~~~~-~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
...... +..+..|...+.++.++|++..+++++. ++.+.+|+..+........
T Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS--------------------------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC--------------------------CCcEEEEEcCCCceEEEee
Confidence 987665 4444566788999999998877777653 3447788777655444443
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEE-EcCCC
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL-DKSSN 434 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~-~~~d~ 434 (916)
...+ ...+..+.+++++..+.+... .++.+.+|+..... .. ........+..+.+.+ ...... +..++
T Consensus 324 --~~~~---~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 324 --LKGH---EGPVSSLSFSPDGSLLVSGGS-DDGTIRLWDLRTGK--PL--KTLEGHSNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred --eccc---CCceEEEEECCCCCEEEEeec-CCCcEEeeecCCCc--ee--EEecCCceEEEEEECC-CCCEEEEecCCC
Confidence 1122 115888888433245555543 44788889887665 11 1111122277788887 533333 57789
Q ss_pred EEEEEccCCc-eEEEeeCC-CceeEEEEeCCceEEEE--ECCEEEEEEcCC
Q 002490 435 QVLVKNLKNE-VVKKSILP-IAADAIFYAGTGNLLCR--AEDRVVIFDLQQ 481 (916)
Q Consensus 435 ~I~iwdl~~~-~~~~i~~~-~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~ 481 (916)
.+.+|+.... ........ ..+....+++++..++. .++.+.+|+..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999954 34444444 58888899999888876 678999999877
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.7e-20 Score=186.52 Aligned_cols=259 Identities=16% Similarity=0.236 Sum_probs=208.3
Q ss_pred CEEEEEEeCCCCEEEEE--ecCCeEEEEECCCCc---eE--EEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 11 RVKGLSFHSKRPWILAS--LHSGVIQLWDYRMGT---LI--DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~--~~dg~I~lwd~~~~~---~~--~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~ 83 (916)
.+.++.|+.... |+++ +.|..|++|. +.|+ .. ....+. .-.|++......++++||..++|+|||++..
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 488899987654 4444 4577889997 4443 21 222222 3345555555689999999999999999988
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCC-ceEEEEEecCCC-EEEEEECCCeEEE
Q 002490 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKED-LVVSASLDQTVRV 161 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~-~v~~l~~~p~~~-~l~s~s~dg~v~v 161 (916)
.+.+.+.+|...|+++.++....+|++++..|.|.|..+.++.....+....+ .|.-+.|+|..+ +|.+++.+|.|.+
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 88889999999999999999999999999999999999999988888875534 455899999876 6778999999999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCccee
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
||+.+..... ...+.|..+...++|+|..+ +|++.+.|..|.+||....+.
T Consensus 192 wDv~g~sp~~--------------------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-- 243 (673)
T KOG4378|consen 192 WDVQGMSPIF--------------------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-- 243 (673)
T ss_pred EeccCCCccc--------------------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--
Confidence 9998865432 24567999999999999654 778889999999999997664
Q ss_pred eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeEEeeccCCcEEEEEEecCC
Q 002490 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWILASHPEM 302 (916)
Q Consensus 241 ~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~~ 302 (916)
.. ......+.+.++|+++|.+|+.|+..|.|..||++. ..++..+..|...|++++|-|..
T Consensus 244 ~~-~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 TD-RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cc-eeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 32 233456889999999999999999999999999985 45678888899999999998865
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=5.2e-19 Score=176.67 Aligned_cols=296 Identities=18% Similarity=0.260 Sum_probs=212.4
Q ss_pred CCEEEEEEeCCCC-EEEEEecCCeEEEEECCCC---------ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 10 NRVKGLSFHSKRP-WILASLHSGVIQLWDYRMG---------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 10 ~~V~~l~~sp~~~-~la~~~~dg~I~lwd~~~~---------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
.+|.++.|+++.. .+|+|+.|..|+||-+..+ +.+..+..|...|+++.|+|+|.+|+||+++|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5899999999776 9999999999999988543 22446678999999999999999999999999999997
Q ss_pred CC--------C--------CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEE
Q 002490 80 YK--------M--------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143 (916)
Q Consensus 80 ~~--------~--------~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 143 (916)
.. + ......+.+|...|..++|+|++.++++++.|.++++||+..|+....+..|.+.|..++|
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence 65 2 2344567789999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec--cCCCeeEEEEcCCCCEEEE
Q 002490 144 HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG--HDRGVNWAAFHPTLPLIVS 221 (916)
Q Consensus 144 ~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~ 221 (916)
.|-++++++-+.|...+.+++...+............ .......+.....+.. -..-...++|+|+|.++++
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~------~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA------KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee------cccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999999999999977777776543322211000000 0000001111111110 1122456789999999887
Q ss_pred EEC----CC-----cEEEEECCCCcceeeeeeecCCCCeEEEEEcc------------------CCCEEEEEeCCCcEEE
Q 002490 222 GAD----DR-----QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA------------------KQDIIVSNSEDKSIRV 274 (916)
Q Consensus 222 ~~~----dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp------------------~~~~l~s~~~dg~i~v 274 (916)
.+. .+ ..++++-...+. +...+++...++..+.|+| -+..++.++. ..+.+
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~r-P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyv 325 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKR-PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYV 325 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccC-ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEE
Confidence 642 22 234444332221 2344444444555555544 2334555554 57999
Q ss_pred EECCCCceeEEee-ccCCcEEEEEEecCCCeEEEEeCCCc
Q 002490 275 WDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 275 wd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
||..+..++.... .|-..++.++|+++|..+++.+.+|.
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 9998877766553 46678999999999999998886554
No 168
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=190.39 Aligned_cols=254 Identities=19% Similarity=0.335 Sum_probs=194.5
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE--ecccccCEEEEEEecCCC-EEEEEECCCeEEEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW 78 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~--~~~h~~~V~~i~fsp~~~-~l~s~~~dg~I~vW 78 (916)
++.+..|.+.|..+.|-|....|++++-|.++++||+++++++.. +.+|.+.|.+++|+|+.+ .|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 456778999999999999777889999999999999999998876 889999999999999665 68999999999999
Q ss_pred ECCCCe---------------------------eEEEEecCCCCEEE---EEEcCCCCEEEEEEC-CCcEEEEeCCCCeE
Q 002490 79 NYKMHR---------------------------CLFTLLGHLDYIRT---VQFHHEYPWIVSASD-DQTIRIWNWQSRTC 127 (916)
Q Consensus 79 d~~~~~---------------------------~~~~l~~h~~~v~~---v~fs~~~~~l~s~s~-dg~I~iwd~~~~~~ 127 (916)
|+.-.. .+..-..+...|.. +.+..|...|++++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 985221 01111234445555 666678888999888 99999999986544
Q ss_pred EEEE--------eCC---CCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceE
Q 002490 128 ISVL--------TGH---NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (916)
Q Consensus 128 ~~~~--------~~h---~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (916)
.... ..| ...+.++.....|.+|...+.|++|.+|++.+.......
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~----------------------- 309 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA----------------------- 309 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh-----------------------
Confidence 3221 223 335677888778898888888999999999885543221
Q ss_pred EEEEeccCC--CeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEE
Q 002490 197 KYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIR 273 (916)
Q Consensus 197 ~~~~~~~~~--~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~ 273 (916)
.+.++.. --..-..+|++.++++|+.|...++|.+.+... ....+.+|.-.|++++|.|.. .-+++++.|..++
T Consensus 310 --~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 310 --EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred --hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 1222211 112335689999999999999999999988765 356678999999999998832 3477779999999
Q ss_pred EEECCCCc
Q 002490 274 VWDVTKRT 281 (916)
Q Consensus 274 vwd~~~~~ 281 (916)
+|++..+-
T Consensus 387 iW~l~~~l 394 (720)
T KOG0321|consen 387 IWRLSNGL 394 (720)
T ss_pred EEeccCch
Confidence 99996543
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-19 Score=182.75 Aligned_cols=290 Identities=14% Similarity=0.198 Sum_probs=213.4
Q ss_pred EEecCCeEEEEECCCCceEEEeccccc--CEEEEEEecCCCEEEE--EECCCeEEEEECCCC--eeEEEEecCCCCEEEE
Q 002490 26 ASLHSGVIQLWDYRMGTLIDRFDEHDG--PVRGVHFHKSQPLFVS--GGDDYKIKVWNYKMH--RCLFTLLGHLDYIRTV 99 (916)
Q Consensus 26 ~~~~dg~I~lwd~~~~~~~~~~~~h~~--~V~~i~fsp~~~~l~s--~~~dg~I~vWd~~~~--~~~~~l~~h~~~v~~v 99 (916)
+++....+.|||+...+....+-.|.. .+.+++|+.... |++ .+.|..|++|.-... +....-....+.-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 344456799999987766666544332 389999987764 444 356888999974322 1211111122244556
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccce
Q 002490 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (916)
Q Consensus 100 ~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 179 (916)
+......++++++..++|+|||++...+.+.+++|...|+++.++....+|++++..|.|.+..+.++.+.....
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----- 160 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----- 160 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-----
Confidence 555666899999999999999999888888999999999999999999999999999999999998865443211
Q ss_pred eeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
.+....|.-+.|+|..+ +|.+++++|.|.+||.....+. ......|..+...++|+|
T Consensus 161 ---------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 161 ---------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-FHASEAHSAPCRGICFSP 218 (673)
T ss_pred ---------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-cchhhhccCCcCcceecC
Confidence 11233456788998765 5677889999999999887752 444578999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeC
Q 002490 259 KQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (916)
Q Consensus 259 ~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d 337 (916)
.. .+|++.+.|..|.+||.........+. ...++..++|+++|.+|++|.. .
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s--------------------------~ 271 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS--------------------------K 271 (673)
T ss_pred CccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC--------------------------C
Confidence 54 577888999999999999877666665 3467899999999999999984 4
Q ss_pred CeEEEEEccCC-ceeeeEEecCCCCCCCCcCCeEEEEcCCC
Q 002490 338 RFLRYYEFSTQ-KDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (916)
Q Consensus 338 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~sp~~ 377 (916)
|.+..||+... .++.++.. | ...|++++|-|.-
T Consensus 272 G~~i~YD~R~~k~Pv~v~sa----h---~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSA----H---DASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeee----c---ccceeEEEeeecc
Confidence 66778888763 33333322 1 2278888888764
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.1e-20 Score=192.99 Aligned_cols=261 Identities=20% Similarity=0.337 Sum_probs=200.4
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--------CceEEEecccccCEEEEEEecCCCEEEEEECCCeE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~--------~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I 75 (916)
++..|.+.|+.++|+|..+.|++++.||+|.+|+++. -+.+.+|.+|.+||.|++..+++..+.+||-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4667889999999999999999999999999999932 25678899999999999999999999999999999
Q ss_pred EEEECCCC----------eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--CCCCceEEEEE
Q 002490 76 KVWNYKMH----------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCASF 143 (916)
Q Consensus 76 ~vWd~~~~----------~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~ 143 (916)
+.|++... .....+.||.+.|+.+++|+....|++++.||+++.|+.....+ .++. ...+...++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 99976421 23456789999999999999999999999999999999876665 3332 22344556666
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCcc---eeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEE
Q 002490 144 HPKEDLVVSASLDQTVRVWDIGALRK---KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (916)
Q Consensus 144 ~p~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 220 (916)
-... ++....+...+.+++...+. ....+... .........++.+.++|++.+.+
T Consensus 448 ~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~--------------------~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 448 TSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSA--------------------SPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred ccch--hHhhhhhcccccccchhhhhhhheeeccccC--------------------CCcccccCccceEEecCCCCeeE
Confidence 4332 22222233344444433221 11111000 00001124577889999999999
Q ss_pred EEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 002490 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 289 (916)
++..|+.|+++|..+++. +.....|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 506 ~~hed~~Ir~~dn~~~~~--l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKI--LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ecccCCceeccccccccc--chheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999997 8888999999999999999999999999999999999877776665443
No 171
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=6.3e-19 Score=168.33 Aligned_cols=247 Identities=18% Similarity=0.283 Sum_probs=195.8
Q ss_pred cccCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecC---CCEEEEEECCCeEEEEECC
Q 002490 6 ETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 6 ~~h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~---~~~l~s~~~dg~I~vWd~~ 81 (916)
.+|.-.|..+.|-| |...+.+++.|.+++|||..+.+....|+ -++.|.+-++||- ..++|+|..|-.|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 66688889999999999999988888886 5778888899884 3478889999999999999
Q ss_pred CCeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-eEEEEE--------------eCCCCceEEEEEec
Q 002490 82 MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR-TCISVL--------------TGHNHYVMCASFHP 145 (916)
Q Consensus 82 ~~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~--------------~~h~~~v~~l~~~p 145 (916)
+|.+.+++.||.+.|.++.|+|... .|++|+.||.|++||++.- .|..++ ..|.+.|..++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 9999999999999999999999888 5678999999999999743 333333 35778899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC
Q 002490 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 146 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 225 (916)
++.++++++.|..+++|+..+++......++.. .....| ..+. +. +.+...++.--.+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-------------------~n~~~~-~~~~-~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPII-------------------HNQTTS-FAVH-IQ-SMDSDVFVLFPND 314 (397)
T ss_pred cchhhhhccCccceEEeecccCccccccccccc-------------------cccccc-ceEE-Ee-ecccceEEEEecC
Confidence 999999999999999999988765432211000 000000 0111 12 2233344444556
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~ 277 (916)
+.+.++.+-.+.. +..+..|...|.|..+.|+-+...++..|+.|..|-.
T Consensus 315 ~~lall~~~sgs~--ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSF--VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceE--EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 8899999888876 8888899889999999999999999999999999976
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5.8e-19 Score=171.46 Aligned_cols=291 Identities=24% Similarity=0.375 Sum_probs=211.6
Q ss_pred cccccCEEEEEEec----C-CCEEEEEECCCeEEEEECCCCe---eEEEEe--cCCCCEEEEEEcCC----CCEEEEEEC
Q 002490 48 DEHDGPVRGVHFHK----S-QPLFVSGGDDYKIKVWNYKMHR---CLFTLL--GHLDYIRTVQFHHE----YPWIVSASD 113 (916)
Q Consensus 48 ~~h~~~V~~i~fsp----~-~~~l~s~~~dg~I~vWd~~~~~---~~~~l~--~h~~~v~~v~fs~~----~~~l~s~s~ 113 (916)
..|..+|.+++|++ + -..+++.|. ..+.+|.....- .+++.. .|......++|+-+ .++++.++.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 46889999999984 2 235666665 488899876432 333332 36667888888753 458999999
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccc
Q 002490 114 DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (916)
Q Consensus 114 dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (916)
-|.|+|.|+.++++...+.+|...|..+.|+|+. ++++++|.|.+||+|++++........
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG------------------ 175 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG------------------ 175 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec------------------
Confidence 9999999999999999999999999999999975 599999999999999999866543222
Q ss_pred cceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce-------------------------ee-eeeec
Q 002490 193 DAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-------------------------EV-DTLRG 246 (916)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~-------------------------~~-~~~~~ 246 (916)
-.++|...|.++.|+++|.+|++++.|.++++|+++..+.+ +. .+..-
T Consensus 176 ------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 176 ------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred ------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 36789999999999999999999999999999999843211 00 12344
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-Cc-------------eeEEeeccCCcEEEEEE--ecCCCeEEEEeC
Q 002490 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RT-------------GVQTFRREHDRFWILAS--HPEMNLLAAGHD 310 (916)
Q Consensus 247 ~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~-------------~~~~~~~~~~~i~~l~~--sp~~~~la~g~~ 310 (916)
|.+.|.|+.|- |+++++-|-++.|..|.... .+ .+.++......+|-+.| .|-+++||.|.
T Consensus 250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn- 326 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN- 326 (385)
T ss_pred ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc-
Confidence 67777787774 68899999999999998621 11 22333344445555443 34455666655
Q ss_pred CCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCE
Q 002490 311 SGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGS 390 (916)
Q Consensus 311 ~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~ 390 (916)
..+.+.+||+...++.....+....... .|+..+||.|+..+++.+ ++++
T Consensus 327 -------------------------q~g~v~vwdL~~~ep~~~ttl~~s~~~~---tVRQ~sfS~dgs~lv~vc--dd~~ 376 (385)
T KOG1034|consen 327 -------------------------QSGKVYVWDLDNNEPPKCTTLTHSKSGS---TVRQTSFSRDGSILVLVC--DDGT 376 (385)
T ss_pred -------------------------CCCcEEEEECCCCCCccCceEEeccccc---eeeeeeecccCcEEEEEe--CCCc
Confidence 5677889999886653322222222213 899999999999877666 4577
Q ss_pred EEEEEe
Q 002490 391 YELYVI 396 (916)
Q Consensus 391 i~i~~~ 396 (916)
|.-|+.
T Consensus 377 Vwrwdr 382 (385)
T KOG1034|consen 377 VWRWDR 382 (385)
T ss_pred EEEEEe
Confidence 776664
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-20 Score=209.68 Aligned_cols=245 Identities=24% Similarity=0.395 Sum_probs=202.3
Q ss_pred CCCEEEEEEeCCCCE----EEEEecCCeEEEEECCC---C---ceEEEecccccCEEEEEEecCCC-EEEEEECCCeEEE
Q 002490 9 SNRVKGLSFHSKRPW----ILASLHSGVIQLWDYRM---G---TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKV 77 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~----la~~~~dg~I~lwd~~~---~---~~~~~~~~h~~~V~~i~fsp~~~-~l~s~~~dg~I~v 77 (916)
..+...++|.+.+.. ||.|+.||.|.+||... + ..+.++..|.++|+++.|++.+. +||+|++||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 357889999997765 88899999999999754 2 34567788999999999999776 9999999999999
Q ss_pred EECCCCeeEEEEe--cCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEeCCCC--ceEEEEEecCCC-EEE
Q 002490 78 WNYKMHRCLFTLL--GHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNH--YVMCASFHPKED-LVV 151 (916)
Q Consensus 78 Wd~~~~~~~~~l~--~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~-~l~ 151 (916)
||+.+-+.-.+.. ...+.|.+++|+..- ..|++++.+|.+.|||++..+.+-.+..+.. .+..++|||+.. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755544442 245689999999754 4788999999999999998888887776554 467899999874 677
Q ss_pred EEECCC---eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-CEEEEEECCCc
Q 002490 152 SASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQ 227 (916)
Q Consensus 152 s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~ 227 (916)
+++.|. .|.+||++.... ....+++|..+|.++.|++.+ .++++++.|++
T Consensus 224 ~As~dd~~PviqlWDlR~ass--------------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASS--------------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred eecCCCCCceeEeecccccCC--------------------------chhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 777653 699999886332 233668999999999999977 78999999999
Q ss_pred EEEEECCCCcceeeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCc
Q 002490 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRT 281 (916)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~ 281 (916)
|.+|+.++++. +..+....+.+..+.|+|... .+++++-||.|.|+.+....
T Consensus 278 ii~wN~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceE--eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999987 888888888999999999766 88888999999999987543
No 174
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.9e-18 Score=174.66 Aligned_cols=267 Identities=20% Similarity=0.334 Sum_probs=190.2
Q ss_pred EEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEecccc----cCEEEEEEec-------CCCEEEEEECCCeEEEEE
Q 002490 14 GLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHD----GPVRGVHFHK-------SQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 14 ~l~~sp~~~~la~~~~d---g~I~lwd~~~~~~~~~~~~h~----~~V~~i~fsp-------~~~~l~s~~~dg~I~vWd 79 (916)
.+..-|+..+++++-.. ..+.+|=++.... .-+-.|+ ..-.|+.|.. .|+++|.|+.|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 34556766777776332 3444454433331 1111122 2235677742 357999999999999999
Q ss_pred CCCCe---eEE------------------EEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCc
Q 002490 80 YKMHR---CLF------------------TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHY 137 (916)
Q Consensus 80 ~~~~~---~~~------------------~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~ 137 (916)
+.-.. +.. .-.+|++.|..+.|+..-+ .|++||.|.+|++||+.++++..++..|...
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~ 288 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK 288 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc
Confidence 85211 111 1236888999999987644 8999999999999999999999999999999
Q ss_pred eEEEEEecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC
Q 002490 138 VMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (916)
Q Consensus 138 v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 216 (916)
|.++.|+|.. .+|++|+.|++|.+.|.+...... ... ...+.|-.++|.|..
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~------------------------~~w---k~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG------------------------KEW---KFDGEVEKVAWDPHS 341 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccC------------------------ceE---EeccceEEEEecCCC
Confidence 9999999965 599999999999999998622111 111 135678889999865
Q ss_pred C-EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCce--eEEeeccCCc
Q 002490 217 P-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDR 292 (916)
Q Consensus 217 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~ 292 (916)
. .+++++.||+|+-+|++.... ++.++..|.+.|+++++++. ..++++++.|+.+++|++....+ +..-...-++
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence 4 677888999999999998742 48999999999999999875 45788999999999999875443 2221122245
Q ss_pred EEEEEEecCCC-eEEEEe
Q 002490 293 FWILASHPEMN-LLAAGH 309 (916)
Q Consensus 293 i~~l~~sp~~~-~la~g~ 309 (916)
..|.++.|+-. .+|.|+
T Consensus 421 l~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGG 438 (463)
T ss_pred eeecccCCCcceEEEecC
Confidence 66667777654 344554
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2.6e-20 Score=200.65 Aligned_cols=281 Identities=19% Similarity=0.315 Sum_probs=229.4
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
|+++|.||-+.|.|..|...|.++++|+.|..++||...++.++....+|.+.|+.++.+.+..++++++.|..|+||.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE---E-eCCCCceEEEEEecCCCEEEEEECC
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV---L-TGHNHYVMCASFHPKEDLVVSASLD 156 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~---~-~~h~~~v~~l~~~p~~~~l~s~s~d 156 (916)
.++.++..+.+|++.|++++|+|-. +.+.||++++||++-.-.+.. + ......+.++.|..++..+++++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999954 778899999999871111111 0 0123557778888888999999999
Q ss_pred CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-CEEEEEECCCcEEEEECCC
Q 002490 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNE 235 (916)
Q Consensus 157 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~v~iwd~~~ 235 (916)
+.-+.|.+.... .+...+.-+.++.+. .+.+++-.+-.+++|++.+
T Consensus 338 ~ea~n~e~~~l~---------------------------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 338 GEARNHEFEQLA---------------------------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred cccccchhhHhh---------------------------------hhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 998888765422 222222233333222 3566666788899999999
Q ss_pred CcceeeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCc-
Q 002490 236 TKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGM- 313 (916)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~- 313 (916)
+.. ...+.+|...+..+.+||-.. ...+++.||+..|||+-.+.+++.+...+..+..-+||++|..++...+-|-
T Consensus 385 g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 385 GQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred chh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCce
Confidence 987 788889999999999999655 4567899999999999999999888877788888999999999887765554
Q ss_pred eEEEecC
Q 002490 314 IVFKLER 320 (916)
Q Consensus 314 ~v~~~~~ 320 (916)
.++....
T Consensus 463 ~i~g~gq 469 (1113)
T KOG0644|consen 463 YILGTGQ 469 (1113)
T ss_pred EEeccCC
Confidence 3443333
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.7e-17 Score=166.05 Aligned_cols=331 Identities=20% Similarity=0.281 Sum_probs=205.0
Q ss_pred CCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc
Q 002490 135 NHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (916)
Q Consensus 135 ~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 213 (916)
..+|.++.|.++.. .+++|+.|..|++|.+......... ........+..|.+.|+++.|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------------~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------------MKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------------eeEEEeecccCCcceeEEEEEc
Confidence 35788899988776 9999999999999998764432210 1222344788999999999999
Q ss_pred CCCCEEEEEECCCcEEEEECC--------C-----Ccce-eeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 214 PTLPLIVSGADDRQVKLWRMN--------E-----TKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 214 p~~~~l~~~~~dg~v~iwd~~--------~-----~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
|+|.+|++|+++|.|.+|... + .+.| ....+++|...|..++|+|++.++++++.|.++++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999999999999999999876 2 1112 2456788999999999999999999999999999999999
Q ss_pred CceeEEeeccCCcEEEEEEecCCCeEEEEe-CCCceEEEecCCcceEEecCCEEEEE--eCCeEEEEEccCCceeeeEEe
Q 002490 280 RTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERPAFAVSGDSLFYA--KDRFLRYYEFSTQKDTQVIPI 356 (916)
Q Consensus 280 ~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-~~~~~v~~~~~~~~~~s~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~ 356 (916)
|.....+..|..-+..++|.|-++++++-+ +.....+.+...+......-..+... ..+. ++...++.-
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e--------~~s~rLfhD 226 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE--------GKSTRLFHD 226 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC--------cceeeeeec
Confidence 999999999999999999999999998755 33244444333322211111111000 1111 111111110
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEcC--CCCEEE---EEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEc
Q 002490 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDV--DGGSYE---LYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDK 431 (916)
Q Consensus 357 ~~~~~~~~~~~i~~l~~sp~~~~llv~~~~--~~g~i~---i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~ 431 (916)
. .+....+.++|+|+|..++.-.+. -++.+. -|.+...........+.........+.|+|
T Consensus 227 e-----TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p--------- 292 (434)
T KOG1009|consen 227 E-----TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP--------- 292 (434)
T ss_pred C-----chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee---------
Confidence 0 001156678999999876654431 001110 111111111100001111111111122211
Q ss_pred CCCEEEEEccCCceEEEeeCCCceeE-EEEeCCceEEEE-ECCEEEEEEcCCCeEEEEEE---cCCeeEEEEcCCCCEEE
Q 002490 432 SSNQVLVKNLKNEVVKKSILPIAADA-IFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQ---TPFVKYVVWSNDMESVA 506 (916)
Q Consensus 432 ~d~~I~iwdl~~~~~~~i~~~~~v~~-l~~s~~g~~l~~-~d~~v~l~d~~~~~~~~~~~---~~~v~~v~~s~d~~~la 506 (916)
..|.+. +- .... +.--|-+.+++. ..+.|++||.++.+++..+. -..++.++||+||.+|+
T Consensus 293 -----Vy~elr--------p~-~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 293 -----VYYELR--------PL-SSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred -----eEEEec--------cc-cccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEE
Confidence 111111 00 0011 222233344444 78899999999988877665 37899999999999999
Q ss_pred EEe-CCeEEEEecC
Q 002490 507 LLS-KHAIIIASKK 519 (916)
Q Consensus 507 ~~~-~~~i~i~~~~ 519 (916)
+.+ ++-..+...+
T Consensus 359 vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 359 VSSTDGFCSLVTFE 372 (434)
T ss_pred EeccCCceEEEEEc
Confidence 888 4443343333
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.7e-19 Score=202.68 Aligned_cols=272 Identities=15% Similarity=0.272 Sum_probs=205.5
Q ss_pred CEEEEEEeCCCC-EEEEEe----------cCCeEEEEEC--CCCc----eEEEecccccCEEEEEEecCCCE----EEEE
Q 002490 11 RVKGLSFHSKRP-WILASL----------HSGVIQLWDY--RMGT----LIDRFDEHDGPVRGVHFHKSQPL----FVSG 69 (916)
Q Consensus 11 ~V~~l~~sp~~~-~la~~~----------~dg~I~lwd~--~~~~----~~~~~~~h~~~V~~i~fsp~~~~----l~s~ 69 (916)
+--.++|+|.++ ++|+|. .+.++-||.+ .+.+ .+..+. -..+...++|.+.+.. +|.|
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc
Confidence 344689999987 666653 2445555544 2322 233332 3456788999887765 8889
Q ss_pred ECCCeEEEEECCCC------eeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEe--CCCCceEE
Q 002490 70 GDDYKIKVWNYKMH------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMC 140 (916)
Q Consensus 70 ~~dg~I~vWd~~~~------~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~ 140 (916)
.+||.|.+||...- ..+.+...|.+.|+.+.|++... +|++|++||.|.|||+..-+.-.... .....|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 99999999998642 23556678999999999999776 99999999999999998644333331 24577999
Q ss_pred EEEecC-CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-E
Q 002490 141 ASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-L 218 (916)
Q Consensus 141 l~~~p~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~ 218 (916)
++|+.. ...|++++.+|.+.|||++..+... .....+....+..++|||+.. .
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-------------------------~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPII-------------------------KLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCccc-------------------------ccccCCCccceeeeeeCCCCcee
Confidence 999865 3488999999999999999864321 112222224578899999863 5
Q ss_pred EEEEECCC---cEEEEECCCCcceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEeeccCCcEE
Q 002490 219 IVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (916)
Q Consensus 219 l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 294 (916)
++++++|. .|.+||++.... ++.++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+....+.+.
T Consensus 222 l~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCF 300 (1049)
T ss_pred eeeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCccee
Confidence 55555443 699999987654 477789999999999999966 8999999999999999999999999998888999
Q ss_pred EEEEecCCC-eEEEEe
Q 002490 295 ILASHPEMN-LLAAGH 309 (916)
Q Consensus 295 ~l~~sp~~~-~la~g~ 309 (916)
.+.|.|... ++++.+
T Consensus 301 dv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAAS 316 (1049)
T ss_pred eeeecCCCcchhhhhe
Confidence 999999766 566555
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=161.72 Aligned_cols=276 Identities=17% Similarity=0.277 Sum_probs=200.7
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEECCCC--------e----eEEEEe-cCCCCEEEEEEc-------CCCCEEEEEEC
Q 002490 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--------R----CLFTLL-GHLDYIRTVQFH-------HEYPWIVSASD 113 (916)
Q Consensus 54 V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~--------~----~~~~l~-~h~~~v~~v~fs-------~~~~~l~s~s~ 113 (916)
..++.|+|||..|++-+.|..+.+|++... . ...++. .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999998521 0 111111 234567777775 56779999999
Q ss_pred CCcEEEEeCCCCeEEEEEeC--CCC---ceEEEEEecCCCEEEEEECCCeEEEEEC-CCCcceeccCCccceeecccccc
Q 002490 114 DQTIRIWNWQSRTCISVLTG--HNH---YVMCASFHPKEDLVVSASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTD 187 (916)
Q Consensus 114 dg~I~iwd~~~~~~~~~~~~--h~~---~v~~l~~~p~~~~l~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (916)
+.-|++||.-+|+....+.+ |.. .-.+++|+|||..|++|. ...|+++|+ +.++.-...+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t------------ 198 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT------------ 198 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh------------
Confidence 99999999999998877764 333 346899999999998876 678999999 44433221110
Q ss_pred ccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEE
Q 002490 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (916)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 266 (916)
+..-..+..+-+.+++|+|... .+++|+....+-||.-....+ +..+.+|.+.|+.++|+++|+.|++|
T Consensus 199 --------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 199 --------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred --------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeeccc
Confidence 0011233456788999999665 899999999999998887776 88888999999999999999999999
Q ss_pred eC-CCcEEEEECCCC-ceeEEeeccCC---cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEE
Q 002490 267 SE-DKSIRVWDVTKR-TGVQTFRREHD---RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR 341 (916)
Q Consensus 267 ~~-dg~i~vwd~~~~-~~~~~~~~~~~---~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~ 341 (916)
+. +-.|-.||++.. .++..+.+|.+ .-.-....|++++|++|. .+|.|+
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~--------------------------tdG~V~ 322 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD--------------------------TDGSVR 322 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC--------------------------CCccEE
Confidence 75 567999999853 45555555543 122344567788888876 567799
Q ss_pred EEEccC-CceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEc
Q 002490 342 YYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 342 ~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~ 385 (916)
+||+++ +..+..+... ...+..++++|-=..++++++
T Consensus 323 vwdlk~~gn~~sv~~~~-------sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTGNY-------SDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred EEecCCCCCcccccccc-------cccccceecCcccceeeeccC
Confidence 999988 5544433221 227888999998665555554
No 179
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=7.8e-18 Score=163.32 Aligned_cols=368 Identities=12% Similarity=0.106 Sum_probs=234.7
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEE-ECCCeEEEEECCCCeeEEEEecC
Q 002490 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMHRCLFTLLGH 92 (916)
Q Consensus 14 ~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~-~~dg~I~vWd~~~~~~~~~l~~h 92 (916)
-.+|||+|+|+|+.+.- .+.|-|..+-++.+.|.. -..|.-+.|..+.-+++.+ ..|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46799999999999655 788889888776665543 4567789999888765554 67889999999988888888888
Q ss_pred CCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCccee
Q 002490 93 LDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKT 171 (916)
Q Consensus 93 ~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~ 171 (916)
...+.+++|||||+ .|.+...+-.|.+|.+.+.+.... +-....+..++|+|+|++.+.++.-.....+++...+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-- 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA-- 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH--
Confidence 89999999999996 555666788999999987765443 32345568899999999988887542211111111000
Q ss_pred ccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCe
Q 002490 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251 (916)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 251 (916)
-.+...+.-..-..+.+.|+|||+.|++ ||.--.-. +.. ....-.+
T Consensus 168 ----------------------W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leyk--v~a-Ye~~lG~ 213 (447)
T KOG4497|consen 168 ----------------------WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYK--VYA-YERGLGL 213 (447)
T ss_pred ----------------------HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhhe--eee-eeeccce
Confidence 0000011222345677899999887765 43221110 111 1112357
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec----c---------------CCcEEEEEEecCCCeEEEEeCCC
Q 002490 252 SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR----E---------------HDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 252 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~---------------~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
..+.|+|.+++|++|+.|+.+|+.+--+.+....+-. + .-...+++|.|..--.-.+-.+.
T Consensus 214 k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se 293 (447)
T KOG4497|consen 214 KFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE 293 (447)
T ss_pred eEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence 7889999999999999999999877554443332210 0 00112344443221111111110
Q ss_pred ------ceEEEecCCc--------------ceEEecCCEEEEE---eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCe
Q 002490 313 ------MIVFKLERER--------------PAFAVSGDSLFYA---KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (916)
Q Consensus 313 ------~~v~~~~~~~--------------~~~s~~~~~l~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (916)
..-.++...+ .+|+.+..++++. ..+.+.+||+..-+...++.-+. +|+
T Consensus 294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--------pir 365 (447)
T KOG4497|consen 294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--------PIR 365 (447)
T ss_pred hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc--------cee
Confidence 0001111111 1566666666666 56789999998866555544332 999
Q ss_pred EEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCC
Q 002490 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSN 434 (916)
Q Consensus 370 ~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~ 434 (916)
...|.|....++++++ ...+.+|......... .+..+ -.|..+.|.-+|.+++..+.|.
T Consensus 366 af~WdP~~prL~vctg--~srLY~W~psg~~~V~--vP~~G--F~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTG--KSRLYFWAPSGPRVVG--VPKKG--FNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEeCCCCceEEEEcC--CceEEEEcCCCceEEe--cCCCC--ceeeeEEecCCCcEEEEEcCCc
Confidence 9999999999999886 2367777765432211 12333 5589999999999999988765
No 180
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.80 E-value=2.6e-13 Score=161.73 Aligned_cols=564 Identities=14% Similarity=0.147 Sum_probs=314.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEE----ECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLW----DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lw----d~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~ 83 (916)
..+.|.++.|-++...++++..+|.|.+. +..+. .+.....-+..|.+++||||+.+|+..+.++++.+-+ .+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 35789999999999999999999999999 54333 2333334577899999999999999999999988875 455
Q ss_pred eeEEEEecCCC-----CEEEEEEcCCCCEEEEEECCCcE-E-EEeCCCC-eEEEEEeCCCCceEEEEEecCCCEEEEEEC
Q 002490 84 RCLFTLLGHLD-----YIRTVQFHHEYPWIVSASDDQTI-R-IWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (916)
Q Consensus 84 ~~~~~l~~h~~-----~v~~v~fs~~~~~l~s~s~dg~I-~-iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 155 (916)
..+....-+.. .-.++-|-.....+ =|+..+.. + .-+.... .....+. +...-..++|-.||.++++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 55555433222 12233333222111 00000000 0 0000000 0011222 3445567999999999998875
Q ss_pred ---C---CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC---CC
Q 002490 156 ---D---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD---DR 226 (916)
Q Consensus 156 ---d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---dg 226 (916)
. ..+|||+-++. +....+.-.+--.+++|-|.|++|++... ..
T Consensus 230 ~~~~~~~R~iRVy~ReG~----------------------------L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 230 EPETGSRRVIRVYSREGE----------------------------LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred EcCCCceeEEEEECCCce----------------------------EEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 2 57899987641 11122222233346899999999988764 35
Q ss_pred cEEEEECCCCcceeeeeee--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeEEeecc-CCcEEEEEEecC
Q 002490 227 QVKLWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT--GVQTFRRE-HDRFWILASHPE 301 (916)
Q Consensus 227 ~v~iwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~-~~~i~~l~~sp~ 301 (916)
.|.+|.-+.-+..+ ..++ .....|..+.|++++..|+....|. |.+|-..+.. ..+.+... ...+..+.|+|.
T Consensus 282 ~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 282 DVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 67788766654322 2222 3456789999999999999988665 9999988764 23334322 234455999996
Q ss_pred CC-eEEEEeC-CCceEEEe----cCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcC
Q 002490 302 MN-LLAAGHD-SGMIVFKL----ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (916)
Q Consensus 302 ~~-~la~g~~-~~~~v~~~----~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (916)
.. .+.+.+. +.+..+.+ .........+...+++.....+.+-.+......|.+......- ..+|..++|++
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~---~~~v~~vaf~~ 436 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL---PSPVNDVAFSP 436 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC---CCCcEEEEEeC
Confidence 44 4555555 55544333 2221111112234444488888888887754333332222222 22899999999
Q ss_pred CCCEEEEEEcCCCCEEEEEEeeCCCCCCCc-----c----------ccccccCceeEEEEEeCCcEEEEEcCC---CEEE
Q 002490 376 TENAVLICSDVDGGSYELYVIPKDSIGRGD-----S----------VQDAKKGLGGSAIFIARNRFAVLDKSS---NQVL 437 (916)
Q Consensus 376 ~~~~llv~~~~~~g~i~i~~~~~~~~~~~~-----~----------~~~~~~~~i~~~~fs~~~~~l~~~~~d---~~I~ 437 (916)
++..+++... +|.+.+|..+........ . ...........++|..++.+++....+ ..+.
T Consensus 437 ~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 437 SNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred CCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 9876555553 478999986554322100 0 011223457889999988877777654 6788
Q ss_pred EEccCC-c---eEEE-eeCCCceeEEEEeCCce-EEE-EECCEEEEEEcCCCeEEE-EEEc--CCeeEEEEcCCC-C-EE
Q 002490 438 VKNLKN-E---VVKK-SILPIAADAIFYAGTGN-LLC-RAEDRVVIFDLQQRLVLG-DLQT--PFVKYVVWSNDM-E-SV 505 (916)
Q Consensus 438 iwdl~~-~---~~~~-i~~~~~v~~l~~s~~g~-~l~-~~d~~v~l~d~~~~~~~~-~~~~--~~v~~v~~s~d~-~-~l 505 (916)
++++.. . .... ...+..+..+...++.. +++ ..+|.+..++........ ++.. ..+..+...... + .+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~ 594 (928)
T PF04762_consen 515 LVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVL 594 (928)
T ss_pred EEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEE
Confidence 888742 1 1222 22232455555555543 222 378888866655443222 2221 222222233222 1 23
Q ss_pred EEEe-CCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCc-eeEEccCCc---------------eEEEEEecc
Q 002490 506 ALLS-KHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNH-IKYCLPNGD---------------SGIIRTLDV 568 (916)
Q Consensus 506 a~~~-~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~-~~~~l~~~~---------------~~~i~~~~~ 568 (916)
+..+ .+.+++=+ ..++ ..+.|.+.. +..++|||.+| +++.-++.. ...++.++.
T Consensus 595 ~GLs~~~~Ly~n~---~~la-----~~~tSF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VER 665 (928)
T PF04762_consen 595 FGLSSNGRLYANS---RLLA-----SNCTSFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVER 665 (928)
T ss_pred EEECCCCEEEECC---EEEe-----cCCceEEEE-cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCcc
Confidence 3333 34444311 1111 223344333 47889999988 555533300 011222222
Q ss_pred eEEEEEE--eCCEEEEEeCCCCeEEEEeChhHH---HHHHHHhcccHHHHHhhhccCc
Q 002490 569 PIYITKV--SGNTIFCLDRDGKNRAIVIDATEY---IFKLSLLRKRYDHVMSMIRNSQ 621 (916)
Q Consensus 569 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~---~f~~al~~~~~~~~~~~~~~~~ 621 (916)
--.++.+ ...++.+.-..|+++.+ .|.-+ .-+.+|..++|.+|+.++|+.+
T Consensus 666 GsriVt~vp~~~~vVLQmPRGNLEtI--~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 666 GSRIVTAVPSDTSVVLQMPRGNLETI--YPRALVLAGIRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred CCEEEEEeCCCceEEEEcCCCchhhh--ccHhHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 2233332 12233333344444432 22211 2356788899999999998775
No 181
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=3.1e-16 Score=169.31 Aligned_cols=741 Identities=13% Similarity=0.119 Sum_probs=378.5
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE-
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL- 89 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l- 89 (916)
.+++++|||..-.|+.|..-|.+.+|...+.+.......|..+|..+.|||+|..++|+..-|.|.+|.+.....++..
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 4678999999999999999999999998777766667789999999999999999999999999999988632211111
Q ss_pred -ecC--CCCEEEEEE-------------------------------------------cCCCCEEEEEECCCcEEEEeCC
Q 002490 90 -LGH--LDYIRTVQF-------------------------------------------HHEYPWIVSASDDQTIRIWNWQ 123 (916)
Q Consensus 90 -~~h--~~~v~~v~f-------------------------------------------s~~~~~l~s~s~dg~I~iwd~~ 123 (916)
..| .+.++-++| .|+|..++.++.+|+|+-.| +
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q 219 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-Q 219 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-C
Confidence 001 011111111 24566777777888887777 4
Q ss_pred CCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCC-Ccceecc-------CCc--cceeecccccccccccc
Q 002490 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-LRKKTVS-------PAD--DILRLSQMNTDLFGGVD 193 (916)
Q Consensus 124 ~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~-~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~ 193 (916)
.|++....+... . ..+-|.|...-+++.-.+-++.++-... +...... .+. ..+..+... |...
T Consensus 220 ~g~~~~V~k~dS-~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss----GvLr 293 (1416)
T KOG3617|consen 220 NGRQRTVHKLDS-E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS----GVLR 293 (1416)
T ss_pred CCcEEEEEEccc-h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc----cccc
Confidence 555555554322 1 3355666555555555555554443321 1100000 000 000000000 0001
Q ss_pred ceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC--------cceeeeeeecCCCCeEEEEEccCCCEEEE
Q 002490 194 AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------KAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (916)
Q Consensus 194 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 265 (916)
...++.+ .....++|++++..+..+..|...|.+.+|.-... ..|.+...+...+.|+.+.|.|-.+.+++
T Consensus 294 ~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 294 KSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred CCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 1111111 13467999999999999999999999999964332 22444444556678999999998777777
Q ss_pred EeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEc
Q 002490 266 NSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEF 345 (916)
Q Consensus 266 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~ 345 (916)
.+....+ +..-+ .. ...|.+..+.+.-+.+.-.+..+..+-....+++-...........+++...++|..|++
T Consensus 373 n~~~~v~-ll~E~--~l---~~~h~~~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e~~lvvwNgr~v~~y~l 446 (1416)
T KOG3617|consen 373 NTEEDVV-LLGEN--SL---TVKHRGKMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGEKQLVVWNGRTVVTYDL 446 (1416)
T ss_pred hhhhhee-eeccC--ch---HHHHhhhhHHhhhcCCceEEEeeccchhhhhhhccchhhheeccceEEEEcCceEEEEEe
Confidence 7654332 22111 00 011222222222222222122221111111122222223334445555557788888888
Q ss_pred cCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCc
Q 002490 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNR 425 (916)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~ 425 (916)
.+.....+....... ....+++.... .+ .+-++ ..+.++.+.+.....+ ......+.+..+..+ |.
T Consensus 447 q~SG~la~~~~~tF~-----cet~~la~~nq--N~-ycies--~~Vfvrt~qGtv~q~i--~~seiEg~~~~ldi~--g~ 512 (1416)
T KOG3617|consen 447 QTSGSLATIQCTTFS-----CETTSLAIVNQ--NL-YCIES--DKVFVRTLQGTVRQEI--SLSEIEGVVVLLDIM--GE 512 (1416)
T ss_pred cccchhHHHhhhhhc-----cccchHhHhhc--ce-EEecc--CcEEEEecchhhhhhc--cchhccCceehhhhc--cc
Confidence 643222211111100 02222333222 22 22221 3566666644332222 223333444444443 66
Q ss_pred EEEEEcCCCEEEEEccCCceEEEeeC----------CCceeEEEEeCCceEEEE----E----CCEEEEEEcCCCeEEEE
Q 002490 426 FAVLDKSSNQVLVKNLKNEVVKKSIL----------PIAADAIFYAGTGNLLCR----A----EDRVVIFDLQQRLVLGD 487 (916)
Q Consensus 426 ~l~~~~~d~~I~iwdl~~~~~~~i~~----------~~~v~~l~~s~~g~~l~~----~----d~~v~l~d~~~~~~~~~ 487 (916)
+++..+..+.++-+|+.....+.+.. .+.+..+..+..|.-+.. . -.++..||+++++....
T Consensus 513 ~l~v~t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~ 592 (1416)
T KOG3617|consen 513 LLIVQTVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMM 592 (1416)
T ss_pred eeEEeehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHh
Confidence 77777756666666665432222111 114455555555433321 1 24899999987764211
Q ss_pred --EE----------cCCeeEEEEcCCCC-EEEEEeCCeEEEEec--CCcceEEEee-eeeEEEEEEecC-CeEEEEcC--
Q 002490 488 --LQ----------TPFVKYVVWSNDME-SVALLSKHAIIIASK--KLVHQCTLHE-TIRVKSGAWDDN-GVFIYTTL-- 548 (916)
Q Consensus 488 --~~----------~~~v~~v~~s~d~~-~la~~~~~~i~i~~~--~~~~~~~~~~-~~~i~s~~w~~~-~~~l~~t~-- 548 (916)
+. .+......|..+.. ++++-..+.+---.+ +..+...+.. ..-|-+...++. |.++.-..
T Consensus 593 ~~lE~ETNakkEs~ts~pvr~fWD~~epRllv~E~~~~~p~s~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~ 672 (1416)
T KOG3617|consen 593 NHLEPETNAKKESSTSPPVRFFWDENEPRLLVVECIHVEPESTPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQK 672 (1416)
T ss_pred hccCccccccccccCCCCceeeecCCCCcEEEEEeeecccccCcccccCCCccccccceEEEeeecccccceeeeecccC
Confidence 10 13344578887654 444332221110000 0011100000 011111111111 22221100
Q ss_pred -----Cce-----eEEccCC------ceEEEEEecceE------EEEEE-----------eCCEEEEEe-----------
Q 002490 549 -----NHI-----KYCLPNG------DSGIIRTLDVPI------YITKV-----------SGNTIFCLD----------- 584 (916)
Q Consensus 549 -----~~~-----~~~l~~~------~~~~i~~~~~~~------~~~~~-----------~~~~~~~~~----------- 584 (916)
..+ .|+++.. +.-.-+++.+.+ -.++. -+=++|.--
T Consensus 673 ~~~~~~Ll~~~VPn~yfvRk~~~d~ed~~ee~~i~~~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~ 752 (1416)
T KOG3617|consen 673 NLHCGKLLSVSVPNFYFVRKSGWDEEDNREERTIGKTLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQ 752 (1416)
T ss_pred CCCccceeeeecCceEEEecccccccccccccccchhhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHH
Confidence 000 1111110 000001111100 00000 000011100
Q ss_pred -----------CCCCeEEEEeC------------------------hhHHHHH---HHHhc-------------------
Q 002490 585 -----------RDGKNRAIVID------------------------ATEYIFK---LSLLR------------------- 607 (916)
Q Consensus 585 -----------~~~~~~~~~i~------------------------~~~~~f~---~al~~------------------- 607 (916)
....++...+| +.|..-| +|+..
T Consensus 753 ~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~DLl 832 (1416)
T KOG3617|consen 753 FIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYDLL 832 (1416)
T ss_pred HHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 00000000000 0010001 11111
Q ss_pred -------ccHHHHHhhhccCcccc-----hhHHH----------------------------------------------
Q 002490 608 -------KRYDHVMSMIRNSQLCG-----QAMIA---------------------------------------------- 629 (916)
Q Consensus 608 -------~~~~~~~~~~~~~~~~~-----~~i~~---------------------------------------------- 629 (916)
|.+++|+.+......+. .+-..
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 23333333322111100 00011
Q ss_pred --------HHHHCCCchhhcccccCcchhhhh---hhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHh
Q 002490 630 --------YLQQKGFPEVALHFVKDERTRFNL---ALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQR 698 (916)
Q Consensus 630 --------~l~~~~~~e~al~~~~~~~~~f~l---al~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~ 698 (916)
||+..|..+.|+++....+.-|.+ ---.|+.+.|-++|.+..++..---||+++.++|++..|.+.|-|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666677777777776666655543 234588999999999999999999999999999999999999999
Q ss_pred hcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHHHHhcC-CHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHH-
Q 002490 699 TKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLG-DVKERVKILESAGHLPLAYITASVHGLQDVAERL- 776 (916)
Q Consensus 699 ~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~~g-~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l- 776 (916)
+.-|..+.+|.-..+-.+.|..++-.+.. .|...++.++--+| .++.|+.+|-++|.+..|++||=...++. |++|
T Consensus 993 AqafsnAIRlcKEnd~~d~L~nlal~s~~-~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~-aL~lI 1070 (1416)
T KOG3617|consen 993 AQAFSNAIRLCKENDMKDRLANLALMSGG-SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS-ALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcCc-hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH-HHHHH
Confidence 99999999998777777788777654433 23344445555566 89999999999999999999999988888 5555
Q ss_pred HHHhC
Q 002490 777 AAELG 781 (916)
Q Consensus 777 ~~~~~ 781 (916)
++.+.
T Consensus 1071 a~DLd 1075 (1416)
T KOG3617|consen 1071 AKDLD 1075 (1416)
T ss_pred HHhcC
Confidence 44333
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.4e-18 Score=162.16 Aligned_cols=247 Identities=14% Similarity=0.289 Sum_probs=195.0
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEec-ccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~-~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
.|.+|++.|+++.|-.++. |.+|...|.|.+|++.+.+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4669999999999988775 8899999999999999998888888 67888999998887 4688889999999999864
Q ss_pred Cee--------------EEEEe---------------------------------------cCCCCEEEEEEcC-CCC--
Q 002490 83 HRC--------------LFTLL---------------------------------------GHLDYIRTVQFHH-EYP-- 106 (916)
Q Consensus 83 ~~~--------------~~~l~---------------------------------------~h~~~v~~v~fs~-~~~-- 106 (916)
+.. .+.+. +..+.+.+..+.. +++
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 221 11110 1123444444332 222
Q ss_pred EEEEEECCCcEEEEeCCCCeEE----------EEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCc
Q 002490 107 WIVSASDDQTIRIWNWQSRTCI----------SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (916)
Q Consensus 107 ~l~s~s~dg~I~iwd~~~~~~~----------~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 176 (916)
+++.|..+|.+.+||+.++..+ .....|..+|+++.|.+.-+.=++|+.+..+..|++........
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq---- 242 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ---- 242 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc----
Confidence 6678888999999999987433 33456899999999998777778888888899998865321111
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEE
Q 002490 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256 (916)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 256 (916)
+.....-...+|..+..-||++.+++++.|+.||+|..++..+ +..+.-|...|.+++|
T Consensus 243 -------------------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 243 -------------------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAF 301 (323)
T ss_pred -------------------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEe
Confidence 1123334457788999999999999999999999999999987 8888999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEC
Q 002490 257 HAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 257 sp~~~~l~s~~~dg~i~vwd~ 277 (916)
+|+..++++++.|++|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999986
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.8e-17 Score=158.17 Aligned_cols=259 Identities=20% Similarity=0.355 Sum_probs=194.2
Q ss_pred CCCEEEEEec----CCeEEEEECCCCc--e-EEEecccccCEEEEEEecCC-CEEEEEECC-------CeEEEEECCCC-
Q 002490 20 KRPWILASLH----SGVIQLWDYRMGT--L-IDRFDEHDGPVRGVHFHKSQ-PLFVSGGDD-------YKIKVWNYKMH- 83 (916)
Q Consensus 20 ~~~~la~~~~----dg~I~lwd~~~~~--~-~~~~~~h~~~V~~i~fsp~~-~~l~s~~~d-------g~I~vWd~~~~- 83 (916)
+.-.+++|.. ++.|.+.++..+. + -+.|..|.+.|+.++-+|.. ++|+|+..+ ..+.||.+...
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 3345666653 5778888776542 2 24566789999999999955 456665432 36889988632
Q ss_pred --------eeEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE-EEEEe-----CCCCceEEEEEec--C
Q 002490 84 --------RCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLT-----GHNHYVMCASFHP--K 146 (916)
Q Consensus 84 --------~~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~-----~h~~~v~~l~~~p--~ 146 (916)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+. ++....++-+|+| +
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence 2333333 4556899999999999888876 78899999987665 33332 3566788899998 6
Q ss_pred CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADD 225 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d 225 (916)
++.+++.+ |++++.||+++.++.. ..-..|...|..+.|+|+.+ +|+++++|
T Consensus 184 gnqv~tt~-d~tl~~~D~RT~~~~~--------------------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDd 236 (370)
T KOG1007|consen 184 GNQVATTS-DSTLQFWDLRTMKKNN--------------------------SIEDAHGQRVRDLDFNPNKQHILVTCGDD 236 (370)
T ss_pred cceEEEeC-CCcEEEEEccchhhhc--------------------------chhhhhcceeeeccCCCCceEEEEEcCCC
Confidence 77777765 8999999999865532 23456888899999999865 68899999
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCC------------------------
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR------------------------ 280 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~------------------------ 280 (916)
|.|+|||.+..+. ++.++.+|...|+++.|+|. .++|++++.|..|.+|...+-
T Consensus 237 gyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 237 GYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred ccEEEEeccCCCc-cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 9999999998775 58999999999999999994 568899999999999965321
Q ss_pred -----ceeEEeeccCCcEEEEEEecCCCeEEE
Q 002490 281 -----TGVQTFRREHDRFWILASHPEMNLLAA 307 (916)
Q Consensus 281 -----~~~~~~~~~~~~i~~l~~sp~~~~la~ 307 (916)
..+.++..|.+.|++++||.-...+.+
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEE
Confidence 123456678889999999987665543
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.3e-17 Score=165.82 Aligned_cols=230 Identities=16% Similarity=0.289 Sum_probs=179.4
Q ss_pred cccccCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-------ceEEEecccccCEEEEEEecCC-CEEEEEECCCe
Q 002490 4 KFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYK 74 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp-~~~~la~~~~dg~I~lwd~~~~-------~~~~~~~~h~~~V~~i~fsp~~-~~l~s~~~dg~ 74 (916)
.+.||+++|..++|+| +...+|+|+.|.+|.||.+..+ +.+..+.+|...|--++|||.- +.|+|+|.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 5578899999999999998654 4467788999999999999964 57899999999
Q ss_pred EEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCC-ceEEEEEecCCCEEEEE
Q 002490 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKEDLVVSA 153 (916)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~-~v~~l~~~p~~~~l~s~ 153 (916)
|.+||+.++..+.++. |.+.|.++.|+.||.+|++.+.|+.|||||.++++.+..-.+|.+ .-..+.|..++..+-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999988 999999999999999999999999999999999999998877765 35667788888855554
Q ss_pred E---CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEE-EECCCcEE
Q 002490 154 S---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVK 229 (916)
Q Consensus 154 s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~v~ 229 (916)
. .+..+-+||..+.+... . ..--....+|.---|.|+.+.+.. |-.|+.|+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~------------------------~-~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPI------------------------A-LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred cccccccceeccCcccccCcc------------------------e-eEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 3 46789999988765431 1 112223456666667888776655 44799999
Q ss_pred EEECCCCcce--eeeeeecCCCCeEEEEEccCC
Q 002490 230 LWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQ 260 (916)
Q Consensus 230 iwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~ 260 (916)
.|.+.+.... .+.++. ...+-..+.|-|..
T Consensus 290 YyEit~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 290 YFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred EEEecCCCceeEEecccc-cCCccccccccccc
Confidence 9999887742 122222 12233456666643
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.5e-17 Score=158.63 Aligned_cols=248 Identities=20% Similarity=0.285 Sum_probs=190.4
Q ss_pred ccccccCCCEEEEEEeCCCCEE-EEEecC-------CeEEEEECCCC---------ceEEEec-ccccCEEEEEEecCCC
Q 002490 3 TKFETKSNRVKGLSFHSKRPWI-LASLHS-------GVIQLWDYRMG---------TLIDRFD-EHDGPVRGVHFHKSQP 64 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~l-a~~~~d-------g~I~lwd~~~~---------~~~~~~~-~h~~~V~~i~fsp~~~ 64 (916)
+.|..|.+.|..++-+|..+.+ ++...+ -.+.||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 3577788999999999965544 444321 24789987532 3445555 5777999999999999
Q ss_pred EEEEEECCCeEEEEECCCCee-EEEEe-----cCCCCEEEEEEcC--CCCEEEEEECCCcEEEEeCCCCeEEEEE-eCCC
Q 002490 65 LFVSGGDDYKIKVWNYKMHRC-LFTLL-----GHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVL-TGHN 135 (916)
Q Consensus 65 ~l~s~~~dg~I~vWd~~~~~~-~~~l~-----~h~~~v~~v~fs~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~ 135 (916)
.+++-. |..|.+|++..+.. +..+. +|....++-+|+| +++.+++.+ |+++..||+++..+...+ ..|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence 998876 77999999987665 33332 3566778889987 777777765 789999999988877666 4788
Q ss_pred CceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcC
Q 002490 136 HYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (916)
Q Consensus 136 ~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 214 (916)
..|..+.|+|+.+ +|++|+.||.|++||.+..+. ....+.+|...|+++.|+|
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--------------------------pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--------------------------PVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------------------------cccccCCCceEEEEEEecC
Confidence 8999999999876 889999999999999987443 3357889999999999999
Q ss_pred C-CCEEEEEECCCcEEEEECCCCcc---------------------------eeeeeeecCCCCeEEEEEccCCC-EEEE
Q 002490 215 T-LPLIVSGADDRQVKLWRMNETKA---------------------------WEVDTLRGHMNNVSCVMFHAKQD-IIVS 265 (916)
Q Consensus 215 ~-~~~l~~~~~dg~v~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~l~~sp~~~-~l~s 265 (916)
. .+++++|+.|..|.+|....-.. -.+.++..|...|.+++|+.-.. .+++
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 5 46888999999999996532110 01335667999999999998655 4567
Q ss_pred EeCCCcEEEEECC
Q 002490 266 NSEDKSIRVWDVT 278 (916)
Q Consensus 266 ~~~dg~i~vwd~~ 278 (916)
-+.||.+.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 7999999886654
No 186
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.5e-14 Score=155.60 Aligned_cols=421 Identities=13% Similarity=0.103 Sum_probs=262.2
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecC------------CCEEEEEECCCeEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS------------QPLFVSGGDDYKIKV 77 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~------------~~~l~s~~~dg~I~v 77 (916)
+.-.++.|+|.| ++|-|++ ..|.+-|..+-+.++.+.-|...|+.+.|.|- ..+++++.-.|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346678899987 6777765 56899999999999999999999999999763 235777788899999
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCC---C-CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecC-CCEEEE
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHE---Y-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVS 152 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~---~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-~~~l~s 152 (916)
||...+..+..+..|.+++..++|-+. . ..|+.-....+|.+||..+|+.............|+.+.|- .+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999888889999999999999763 3 36667777789999999999999888766677888999984 456666
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEE-EEEeccCC------CeeEEEEcCCCCEEEEEECC
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK-YVLEGHDR------GVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~v~~~~~~p~~~~l~~~~~d 225 (916)
-+..|.|.+-+.-........ ...+.+.+...++......... ........ -...++|+|.-+.++.....
T Consensus 174 l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 666787877776543332211 1111111110000000000000 00000000 02235778876666666678
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCc----------------eeEEee
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA--KQDIIVSNSEDKSIRVWDVTKRT----------------GVQTFR 287 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~s~~~dg~i~vwd~~~~~----------------~~~~~~ 287 (916)
+.+.++|++-..+ +....-..+.+.-+.+-| +...|++.-.||.+.+|-.+... ....+.
T Consensus 252 rellv~dle~~~~--l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 252 RELLVFDLEYECC--LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred cceEEEcchhhce--eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 8899999988776 444444444444555555 45689999999999999755311 111111
Q ss_pred c-cCCcEEEEEEecC-CCeEE-EEeCCCceEEEecCCcc------------------------------eEE--------
Q 002490 288 R-EHDRFWILASHPE-MNLLA-AGHDSGMIVFKLERERP------------------------------AFA-------- 326 (916)
Q Consensus 288 ~-~~~~i~~l~~sp~-~~~la-~g~~~~~~v~~~~~~~~------------------------------~~s-------- 326 (916)
. ..-++......|. .+.++ .-+++...+|.+..++. ..+
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sG 409 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSG 409 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCC
Confidence 0 0111122222222 11111 11223333444432211 000
Q ss_pred ------------------ecCC-------EEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEE
Q 002490 327 ------------------VSGD-------SLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAV 380 (916)
Q Consensus 327 ------------------~~~~-------~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~l 380 (916)
+.++ .++++ ..|+|.++|+.++.....+.+.. . .|+++.|-...+.+
T Consensus 410 s~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht----~---~VkgleW~g~sslv 482 (1062)
T KOG1912|consen 410 STCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT----S---LVKGLEWLGNSSLV 482 (1062)
T ss_pred ceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc----c---ceeeeeeccceeEE
Confidence 1111 23444 89999999999876554444322 2 77888887765544
Q ss_pred EEEEcCCC-------CEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC
Q 002490 381 LICSDVDG-------GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (916)
Q Consensus 381 lv~~~~~~-------g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~ 443 (916)
-.++..-+ +.+.+-+++.+-.............+|+.+..|.-++|++..-.+.-+.+||+++
T Consensus 483 Sfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 483 SFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred EeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 43333211 2455666665544433323445567899999999999999999999999999854
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.5e-17 Score=159.64 Aligned_cols=283 Identities=12% Similarity=0.168 Sum_probs=206.7
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECC------CCceEEEec-ccccCEEEEEEecCCCEEEEEECCCeEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR------MGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~------~~~~~~~~~-~h~~~V~~i~fsp~~~~l~s~~~dg~I~ 76 (916)
.+.+|.+.|.++.||.+++||++|+.|..+++|++. +.+.+.... .|...|.|++|...++++.+|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 467899999999999999999999999999999974 345555554 4668999999999999999999999999
Q ss_pred EEECCCCeeEEEEec--CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEE--EEeCCCCceEEEEEecCCC-EE
Q 002490 77 VWNYKMHRCLFTLLG--HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CIS--VLTGHNHYVMCASFHPKED-LV 150 (916)
Q Consensus 77 vWd~~~~~~~~~l~~--h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~-~~~--~~~~h~~~v~~l~~~p~~~-~l 150 (916)
.-|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ .+. ..........++.|+|... +|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999888877652 23489999999999999999999999999998654 222 2223445677889999765 78
Q ss_pred EEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEE
Q 002490 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230 (916)
Q Consensus 151 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~i 230 (916)
++.+..+-+-+||++.......... ....+......-..+.|+|+|+.|++--....-.+
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~--------------------~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRS--------------------MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred EeccccCCCCceeeccccchHHhhh--------------------ccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 8888888999999987443221100 00011111222356789999999888776666778
Q ss_pred EECCCCcceeeeeeecCC-------CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc----------------------
Q 002490 231 WRMNETKAWEVDTLRGHM-------NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT---------------------- 281 (916)
Q Consensus 231 wd~~~~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---------------------- 281 (916)
||+.+..+. +.... |. ..+.+++|..+. .+++|+.+-.|++|.+....
T Consensus 271 ~D~~S~R~~-V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 271 FDFISQRCF-VLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred eeeecccce-eEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 888776642 22222 22 246677887554 49999999999999875311
Q ss_pred -eeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 282 -GVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 282 -~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
.+..+++|..-+..+.|+|..++|++.+
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSG 376 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSG 376 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccc
Confidence 2334566667777778887777666543
No 188
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=5.9e-17 Score=157.31 Aligned_cols=402 Identities=16% Similarity=0.212 Sum_probs=248.2
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeEEEEEeCC
Q 002490 56 GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIWNWQSRTCISVLTGH 134 (916)
Q Consensus 56 ~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~h 134 (916)
-.+|||+|+++|+.+.- .+.|-|.++-+..+.+. -.+.|..+.|..|.-+++ ..+.++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999865 88888888766554433 256788889998887555 4567889999999988888888888
Q ss_pred CCceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc
Q 002490 135 NHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (916)
Q Consensus 135 ~~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 213 (916)
...+.++.|+|+|+ .|.+..-+-.|.+|.+.+.+.. .+.-....+..++|+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~----------------------------~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY----------------------------LLPHPKTNVKGYAFH 142 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE----------------------------EecccccCceeEEEC
Confidence 88999999999996 5556667889999999874321 222234566889999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccee-eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc
Q 002490 214 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (916)
Q Consensus 214 p~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 292 (916)
|+|++.+..+.-.....+.+...+.|. +..+.-.+-..+.+.|+|||..|++ ||.--...+..+. ..-.
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG 212 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLG 212 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccc
Confidence 999998888754332233333223221 2334444556788999999987764 4432222222222 1235
Q ss_pred EEEEEEecCCCeEEEEeCCCce-EEEecCCcceEEecCCEEEEE--eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCe
Q 002490 293 FWILASHPEMNLLAAGHDSGMI-VFKLERERPAFAVSGDSLFYA--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (916)
Q Consensus 293 i~~l~~sp~~~~la~g~~~~~~-v~~~~~~~~~~s~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (916)
+..++|+|.++++++|+-+++. +.+-- .+.+-+..+-.+ .|....+..-++.+... . ...
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~----tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q------l-------~~~ 275 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHF----TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ------L-------LHH 275 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhcee----eeeehhhhccchhccCchhhhhhhhhcchhh------h-------ccc
Confidence 7789999999999999866542 21100 111111111111 12211111111111000 0 223
Q ss_pred EEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC--CCCc--cccccccCceeEEEEEeCCcEEEEEcC--CCEEEEEccCC
Q 002490 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSI--GRGD--SVQDAKKGLGGSAIFIARNRFAVLDKS--SNQVLVKNLKN 443 (916)
Q Consensus 370 ~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~--~~~~--~~~~~~~~~i~~~~fs~~~~~l~~~~~--d~~I~iwdl~~ 443 (916)
+++|.|..--.-.... +-.+|.....+. ...+ .-.....-.+.-++|++|..|+++-.+ .+.+-+||+++
T Consensus 276 cLsf~p~~~~a~~~~~----se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEE----SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred ccccCCCccccCcccc----chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 4556554221100000 001121111000 0000 001111334667999999999999763 36899999997
Q ss_pred ceEEEeeC-CCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEE-cCCeeEEEEcCCCCEEEEEeCCeEEEEec
Q 002490 444 EVVKKSIL-PIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQ-TPFVKYVVWSNDMESVALLSKHAIIIASK 518 (916)
Q Consensus 444 ~~~~~i~~-~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~-~~~v~~v~~s~d~~~la~~~~~~i~i~~~ 518 (916)
..+..+-. ..+|....|.|....|+. +...+++|.......+.... +-.|..+.|..+|..++..+++...+.-.
T Consensus 352 l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a~v 430 (447)
T KOG4497|consen 352 LKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCVAIV 430 (447)
T ss_pred hhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence 55544322 238999999999655544 66688999887766666554 46799999999999999999888777643
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.7e-16 Score=143.96 Aligned_cols=261 Identities=18% Similarity=0.251 Sum_probs=186.6
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----------ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~----------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
..|.+-+++|.+++|++|..+|.|.+..+++- ..+-.+++|+++|..++|+ ..+|++|++ |.|+=|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 45666789999999999999999999998532 2344568999999999998 346777765 9999998
Q ss_pred CCCCee------EEEE--ecC-----CCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecC
Q 002490 80 YKMHRC------LFTL--LGH-----LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146 (916)
Q Consensus 80 ~~~~~~------~~~l--~~h-----~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~ 146 (916)
...... +... .-| -..|.++...|..+-+++++.|+.++-||+++|+..+++++|..+|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 753221 1111 112 236888989988777888889999999999999999999999999999998556
Q ss_pred CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC-CCeeEEEEcCCCCEEEEEECC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d 225 (916)
...+++|+.||++|+||.++.+.......... ...+..|- ..|-+++-+ ..++++|+ .
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~------------------~~~lRp~~g~wigala~~--edWlvCGg-G 226 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN------------------PNLLRPDWGKWIGALAVN--EDWLVCGG-G 226 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccC------------------hhhcCcccCceeEEEecc--CceEEecC-C
Confidence 66899999999999999999876554321000 01122222 234555544 45787776 6
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
..+.+|.++..++..+..++ ..+..+.|. .+.++++++.+.+.-|.+. |..............+..|+.
T Consensus 227 p~lslwhLrsse~t~vfpip---a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~ 295 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIP---ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQT 295 (325)
T ss_pred CceeEEeccCCCceEEEecc---cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccC
Confidence 77999999998875555555 456677775 4568888888899999875 444444444444444444443
No 190
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.2e-16 Score=158.96 Aligned_cols=243 Identities=23% Similarity=0.366 Sum_probs=179.6
Q ss_pred CEEEEEEeC-----CCCEEEEEe---cCCeEEEEEC-CCCceEE---EecccccCEEEEEEec-CCCEEEEEECCCeEEE
Q 002490 11 RVKGLSFHS-----KRPWILASL---HSGVIQLWDY-RMGTLID---RFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKV 77 (916)
Q Consensus 11 ~V~~l~~sp-----~~~~la~~~---~dg~I~lwd~-~~~~~~~---~~~~h~~~V~~i~fsp-~~~~l~s~~~dg~I~v 77 (916)
+|+-++|.. +.++||+.. ..|...+.-+ ++|+.-. .+.+|.++|..++|+| +...+||||+|.+|.|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v 108 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV 108 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence 566666643 344555432 1233333332 3444333 3468999999999999 4567999999999999
Q ss_pred EECCCC-------eeEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCE
Q 002490 78 WNYKMH-------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDL 149 (916)
Q Consensus 78 Wd~~~~-------~~~~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 149 (916)
|.+..+ +.+..+.+|...|-.++|||.- +.|++++.|.+|.+||+.+|+.+.++. |...|.++.|+.+|.+
T Consensus 109 W~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 109 WQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL 187 (472)
T ss_pred EECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCce
Confidence 998643 4567889999999999999965 488999999999999999999988888 9999999999999999
Q ss_pred EEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCC-CeeEEEEcCCCCEEEEEE---CC
Q 002490 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR-GVNWAAFHPTLPLIVSGA---DD 225 (916)
Q Consensus 150 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~---~d 225 (916)
+++.+.|..|||||.+.++.... ..+|.+ .-..+.|-.+|.++.+|. ++
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e---------------------------~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSE---------------------------GVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred eeeecccceeEEEcCCCCcEeee---------------------------cccccCCCcceeEEeccCceeeeccccccc
Confidence 99999999999999998765432 233443 234566778888555543 47
Q ss_pred CcEEEEECCCCcce-eeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEEECCCCce
Q 002490 226 RQVKLWRMNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTG 282 (916)
Q Consensus 226 g~v~iwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~vwd~~~~~~ 282 (916)
+++.+||..+-... ...++. .++.|.---|.|+...+..++ .|+.||.|.+.+..+
T Consensus 241 Rq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 89999998765432 133333 345566666788887776554 689999999887654
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=8e-19 Score=189.31 Aligned_cols=272 Identities=24% Similarity=0.377 Sum_probs=213.5
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
+.++.+.+|...|.|+.|...|.++++|++|..++||+.++..|+.+..||.+.|+.++.+.++.+++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEe
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
++.+.++..+.+|.+.|++++|+|-. +.+.||++++||.+- ......|.+. -.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~----------------------~~ 313 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPL----------------------KF 313 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCC----------------------Cc
Confidence 99999999999999999999999965 778899999999882 1111111100 00
Q ss_pred ccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCC
Q 002490 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 202 ~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~ 280 (916)
....-+.++.|..++..+++++.|+.-..|.+.-.. .+...+.-+.++.+- .+.+++-.+-.+++|++.++
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~--------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA--------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred ccccceeeeeccccccccccccCCcccccchhhHhh--------hhccceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 112446677788888889999999988888654322 222222222222222 35556666778999999999
Q ss_pred ceeEEeeccCCcEEEEEEecCCCeEE--EEeCCCceEEEecCCcc--------------eEEecCCEEEEE-eCCeEEEE
Q 002490 281 TGVQTFRREHDRFWILASHPEMNLLA--AGHDSGMIVFKLERERP--------------AFAVSGDSLFYA-KDRFLRYY 343 (916)
Q Consensus 281 ~~~~~~~~~~~~i~~l~~sp~~~~la--~g~~~~~~v~~~~~~~~--------------~~s~~~~~l~~~-~d~~i~~~ 343 (916)
...+.+.+|.+.+..+.+||-...++ +|.|+..+||++-.+.| .|+.+|..++.. .-|++++.
T Consensus 386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 99999999999999999999887766 78899999998877655 566666666666 66777776
Q ss_pred EccCC
Q 002490 344 EFSTQ 348 (916)
Q Consensus 344 d~~~~ 348 (916)
....+
T Consensus 466 g~gqs 470 (1113)
T KOG0644|consen 466 GTGQS 470 (1113)
T ss_pred ccCCC
Confidence 65443
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=1.8e-16 Score=151.62 Aligned_cols=276 Identities=16% Similarity=0.268 Sum_probs=201.3
Q ss_pred CEEEEEEeC---CCCEEEEEec----CCeEEEEECC--CCceEEEe-cccccCEEEEEEecCCC-----EEEEEECCCeE
Q 002490 11 RVKGLSFHS---KRPWILASLH----SGVIQLWDYR--MGTLIDRF-DEHDGPVRGVHFHKSQP-----LFVSGGDDYKI 75 (916)
Q Consensus 11 ~V~~l~~sp---~~~~la~~~~----dg~I~lwd~~--~~~~~~~~-~~h~~~V~~i~fsp~~~-----~l~s~~~dg~I 75 (916)
.+.++.||. .+-+||.|+. ++.|+|-.+. +++.+..- -.|.-|++.+.|.|+.. +|||+++ .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 567888884 3458898874 4667776553 44444322 26999999999999873 5666654 89
Q ss_pred EEEECCC--Cee--EEEE-----ecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCe---EEEEEeCCCCceEEEE
Q 002490 76 KVWNYKM--HRC--LFTL-----LGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRT---CISVLTGHNHYVMCAS 142 (916)
Q Consensus 76 ~vWd~~~--~~~--~~~l-----~~h~~~v~~v~fs~-~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~h~~~v~~l~ 142 (916)
++|.+.. .+. ...+ ..+..++++..|+. +-++|.++|-|-+..|||++++. ....+-.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999873 211 1111 23567899999987 45588999999999999999863 3566778999999999
Q ss_pred EecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEE
Q 002490 143 FHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIV 220 (916)
Q Consensus 143 ~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~ 220 (916)
|...+ +.+++.+.||+||+||++..+-... .+.-.....+...++|+++.. +++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTI------------------------IYE~p~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTI------------------------IYEDPSPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceE------------------------EecCCCCCCcceeeccCcCCchHHh
Confidence 99755 4899999999999999998664321 111112245677888888654 555
Q ss_pred EEE-CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCce------eEEeeccCCc
Q 002490 221 SGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG------VQTFRREHDR 292 (916)
Q Consensus 221 ~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~~~ 292 (916)
+-. +...|.|.|++.... ++..+++|.+.|..++|.|. ...|++++.|....+||+...-. +..+. ..+.
T Consensus 260 Tf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E 337 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE 337 (364)
T ss_pred hhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce
Confidence 544 446799999987654 58889999999999999995 56899999999999999975322 22222 4567
Q ss_pred EEEEEEec-CCCeEEEEeCCCce
Q 002490 293 FWILASHP-EMNLLAAGHDSGMI 314 (916)
Q Consensus 293 i~~l~~sp-~~~~la~g~~~~~~ 314 (916)
|..+.|++ ....++++.++.+.
T Consensus 338 VNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred eeeeeecccCCCEEEEEecCeee
Confidence 89999996 56688887765543
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.5e-16 Score=176.21 Aligned_cols=278 Identities=21% Similarity=0.339 Sum_probs=205.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEeccc---ccCEEEEEEec--CCCEEEEEECCCeEEEEECC-
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEH---DGPVRGVHFHK--SQPLFVSGGDDYKIKVWNYK- 81 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h---~~~V~~i~fsp--~~~~l~s~~~dg~I~vWd~~- 81 (916)
....-+.+.|||-.+.++++...-.|+|||++.++.+..|+.+ ...|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3445678899999999999988889999999999999988754 45688998865 45689999999999999632
Q ss_pred CC----eeEEEEe---c----CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-CCCCceEEEEEec-CCC
Q 002490 82 MH----RCLFTLL---G----HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHP-KED 148 (916)
Q Consensus 82 ~~----~~~~~l~---~----h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~~p-~~~ 148 (916)
++ +.+.... + ..+.=.-+.|.....+|+++++-..|+|||....+++..+. +.+..|+++.-+- .|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 22 2332222 1 11222446788777778888878999999998877777664 3445566665433 468
Q ss_pred EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC--eeEEEEcCCCC-EEEEEECC
Q 002490 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG--VNWAAFHPTLP-LIVSGADD 225 (916)
Q Consensus 149 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~-~l~~~~~d 225 (916)
.++.|..||.|++||.+...... .......|... |..+.+.+.|- .|++|+.+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds------------------------~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDS------------------------LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEEEeecCCceEEeecccCCccc------------------------cceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 99999999999999988743321 22355667766 99999998765 49999999
Q ss_pred CcEEEEECCCCcceeeeeeecCC--C-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc-------CCcEEE
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHM--N-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-------HDRFWI 295 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~--~-~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~ 295 (916)
|.|++||++........+...|. + ..+++..|++...+|+|+. +.|.||++. |+.+..++.. .+.+.+
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcce
Confidence 99999999984321222333332 3 5999999999999999998 899999986 4444444322 246789
Q ss_pred EEEecCCCeEEEEeCC
Q 002490 296 LASHPEMNLLAAGHDS 311 (916)
Q Consensus 296 l~~sp~~~~la~g~~~ 311 (916)
++|||..-++|+|..+
T Consensus 1357 L~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred eeecchhHhhhhccCC
Confidence 9999999999999743
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.6e-17 Score=172.93 Aligned_cols=238 Identities=22% Similarity=0.282 Sum_probs=178.3
Q ss_pred EecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC--------CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcE
Q 002490 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTI 117 (916)
Q Consensus 46 ~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~--------~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I 117 (916)
++..|...|+.+.|+|..+.|++++.||+|++|+++. -+++.++.+|.++|.|++..+++..+++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5567999999999999999999999999999999932 35788999999999999999999999999999999
Q ss_pred EEEeCCCC----------eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeecccccc
Q 002490 118 RIWNWQSR----------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (916)
Q Consensus 118 ~iwd~~~~----------~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 187 (916)
+.|++... .....+.||...|+.+++|+..+.|++++.||+|+.|+......... ..
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f-~~------------ 435 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTF-GE------------ 435 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcccc-CC------------
Confidence 99976421 23457789999999999999999999999999999999876543110 00
Q ss_pred ccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeeeeee-----cCCCCeEEEEEccCCC
Q 002490 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLR-----GHMNNVSCVMFHAKQD 261 (916)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~sp~~~ 261 (916)
...| +--.++.+-.... ..++...-+.-.++++.......+.... .....+..+.++|.+.
T Consensus 436 ------------~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 436 ------------PKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred ------------cccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 0001 1112333332221 1122222222333333333321111111 1123467788999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 262 IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 262 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
+.+++.+|+.|+++|..++..+.....|...++++++.|+|.+|++++
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 999999999999999999999999999999999999999999999887
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1e-16 Score=156.93 Aligned_cols=289 Identities=13% Similarity=0.214 Sum_probs=191.6
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec--CCCEEEEEECCCeEEEEECCCCcceeccCCccceeecc
Q 002490 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (916)
Q Consensus 106 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 183 (916)
..++++...|.|++||+.+++.+..++++...+..+.|.. ....+.+++.||+|++||++...+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~----------- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR----------- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----------
Confidence 4688888899999999999999999999999999999987 456899999999999999998665432
Q ss_pred ccccccccccceEEEEEeccC-CCeeEEEEcCCCCEEEEEE----CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 184 MNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGA----DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
.....+. .+..+++..-.++.+++|+ .+-.|.+||.+..+...-.-...|...|+++.|+|
T Consensus 110 --------------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 110 --------------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred --------------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 2333343 4566677666777888876 36689999999877532233457999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCce---eEEeeccCCcEEEEEEecCC--CeEEEEeCCCceEEEecCCcceEEecCCEE
Q 002490 259 -KQDIIVSNSEDKSIRVWDVTKRTG---VQTFRREHDRFWILASHPEM--NLLAAGHDSGMIVFKLERERPAFAVSGDSL 332 (916)
Q Consensus 259 -~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~sp~~--~~la~g~~~~~~v~~~~~~~~~~s~~~~~l 332 (916)
+.++|++||.||-|.+||+..... +...-.+...|..+.|+.++ +++...+..+..+|+++...+........+
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 457999999999999999976432 11222355668899999887 666666665555555544332111110000
Q ss_pred EEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCC---ccccc
Q 002490 333 FYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRG---DSVQD 409 (916)
Q Consensus 333 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~---~~~~~ 409 (916)
-.. ..+...... .+-. ..+|.+.-+.+..+.+-+...++.+.....+.. ...+.
T Consensus 256 ~~~-------------------d~r~~~~~d---Y~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~ 312 (376)
T KOG1188|consen 256 SAD-------------------DLRKEDNCD---YVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ 312 (376)
T ss_pred hhh-------------------hHHhhhhhh---heee-cccCCCcceEEEeccccCceeEEEeeecccccccCcccccc
Confidence 000 000000000 1111 223443333333333445666666553222221 11233
Q ss_pred -cccCceeEEEEEeCCcEEEEEcCCCEEEEEccC
Q 002490 410 -AKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (916)
Q Consensus 410 -~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~ 442 (916)
+|...|+++.|...+.++.+++.||.+.+|..+
T Consensus 313 g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 313 GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 366668889999899999999999999999864
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=160.56 Aligned_cols=146 Identities=22% Similarity=0.389 Sum_probs=121.3
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEec--CCCEEEEEECCCeEEEEECCCCeeEEE--EecCC-CCE
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWNYKMHRCLFT--LLGHL-DYI 96 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp--~~~~l~s~~~dg~I~vWd~~~~~~~~~--l~~h~-~~v 96 (916)
..+|++.++|.|++||..+++.+..|++|...++.+.|.. ....+.+++.||+|++||+++...... ...+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999976 455788999999999999997655443 34454 466
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEeCCCCeE-EEEE-eCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCC
Q 002490 97 RTVQFHHEYPWIVSASD----DQTIRIWNWQSRTC-ISVL-TGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGAL 167 (916)
Q Consensus 97 ~~v~fs~~~~~l~s~s~----dg~I~iwd~~~~~~-~~~~-~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~ 167 (916)
.+++.+-.++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|+. +.|++||.||.|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 67777667777777754 56799999997766 5544 5799999999999965 59999999999999999775
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-15 Score=142.08 Aligned_cols=246 Identities=18% Similarity=0.259 Sum_probs=176.2
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQS----------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 95 ~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~----------~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~ 164 (916)
.|..-+++|.+++|+.++.+|+|.+..+.+ ...+...++|.++|..++|+ ..+|++++ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 345567899999999999999999998853 23445568999999999998 45777776 699999987
Q ss_pred CCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeee
Q 002490 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 244 (916)
+...+..-.. ...... . +..+-...-..|+++...|..+-++.++.|+.++-||+++++. ..++
T Consensus 89 ~E~~es~~~K--~lwe~~--~----------P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~ 152 (325)
T KOG0649|consen 89 NEEEESLATK--RLWEVK--I----------PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREY 152 (325)
T ss_pred hhhhhhccch--hhhhhc--C----------ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEE
Confidence 6544311000 000000 0 0000011224689999999888788888899999999999997 8899
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc--------EEEEEEecCCCeEEEEeCCCceEE
Q 002490 245 RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR--------FWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 245 ~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
++|+..|.++.--.....+++|++||++|+||.++++.++.+.....+ -|..+..-+..++++
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC--------- 223 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC--------- 223 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe---------
Confidence 999999999998666667999999999999999999998887532211 112222223334444
Q ss_pred EecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 317 ~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
+....+.+|.+.+.++..+++++. ++..+.|-.+ .+++.+ +++.+.-|.+
T Consensus 224 ------------------GgGp~lslwhLrsse~t~vfpipa--------~v~~v~F~~d--~vl~~G--~g~~v~~~~l 273 (325)
T KOG0649|consen 224 ------------------GGGPKLSLWHLRSSESTCVFPIPA--------RVHLVDFVDD--CVLIGG--EGNHVQSYTL 273 (325)
T ss_pred ------------------cCCCceeEEeccCCCceEEEeccc--------ceeEeeeecc--eEEEec--cccceeeeee
Confidence 455778899999999999998876 7778888765 434333 4468888887
Q ss_pred eC
Q 002490 397 PK 398 (916)
Q Consensus 397 ~~ 398 (916)
..
T Consensus 274 ~G 275 (325)
T KOG0649|consen 274 NG 275 (325)
T ss_pred cc
Confidence 54
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=156.43 Aligned_cols=259 Identities=18% Similarity=0.247 Sum_probs=176.9
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCC------CCeEEEEEe-CCCCceEEEEEecCCCEEEEEECCCe
Q 002490 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ------SRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQT 158 (916)
Q Consensus 86 ~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~------~~~~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~ 158 (916)
.+.+.+|.+.|.++.|+.++++|++|++|..+++|++. +.+++.... .|.+.|.|++|......+++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34556899999999999999999999999999999985 345666554 35578999999988889999999999
Q ss_pred EEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 159 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
|...|+.+.+...+ ..-....+.|..+..+|..+.|++.+.++.|.+||.+....
T Consensus 129 VI~HDiEt~qsi~V-------------------------~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 129 VIKHDIETKQSIYV-------------------------ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred eEeeecccceeeee-------------------------ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 99999988554321 11122345899999999999999999999999999987662
Q ss_pred -eeeeeeecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCce-eEE------eeccCCcEEEEEEecCCCeEEEEe
Q 002490 239 -WEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTG-VQT------FRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 239 -~~~~~~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~-~~~------~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
.....+.........+.|+|.. .+|++.++.+-+-+||.+.... +.. +......-.++.|+|+|+.+.+-.
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 2233333445677889999954 5778888888999999875432 111 111122234567888877665432
Q ss_pred CCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecC-C-CCCCCCcCCeEEEEcCCCCEEEEEEcCC
Q 002490 310 DSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR-P-GSTSLNQSPRTLSYSPTENAVLICSDVD 387 (916)
Q Consensus 310 ~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~i~~l~~sp~~~~llv~~~~~ 387 (916)
.+ ..-.+||+.+.++ +++.... + |... ...+.+++|--+-. ++++++
T Consensus 264 R~--------------------------~~P~~~D~~S~R~-~V~k~D~N~~GY~N-~~T~KS~~F~~D~~---v~tGSD 312 (609)
T KOG4227|consen 264 RG--------------------------KCPLYFDFISQRC-FVLKSDHNPNGYCN-IKTIKSMTFIDDYT---VATGSD 312 (609)
T ss_pred cc--------------------------CCCEEeeeecccc-eeEeccCCCCccee-eeeeeeeeeeccee---eeccCc
Confidence 11 1122344443222 2222221 1 1100 11567788876643 445557
Q ss_pred CCEEEEEEeeCCC
Q 002490 388 GGSYELYVIPKDS 400 (916)
Q Consensus 388 ~g~i~i~~~~~~~ 400 (916)
+-.+.+|.++...
T Consensus 313 ~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 313 HWGIHIWKLPRAN 325 (609)
T ss_pred ccceEEEecCCCc
Confidence 8899999998654
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=4e-16 Score=172.04 Aligned_cols=245 Identities=17% Similarity=0.225 Sum_probs=184.9
Q ss_pred CCCEEEEEEeCC-CCEEEEEecCCeEEEEECCCCce--EEEe----cccccCEEEEEEecCC--CEEEEEECCCeEEEEE
Q 002490 9 SNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMGTL--IDRF----DEHDGPVRGVHFHKSQ--PLFVSGGDDYKIKVWN 79 (916)
Q Consensus 9 ~~~V~~l~~sp~-~~~la~~~~dg~I~lwd~~~~~~--~~~~----~~h~~~V~~i~fsp~~--~~l~s~~~dg~I~vWd 79 (916)
...|+|++|+|. ..++|.|+.+|.|.+||++.+.. ...+ ..|..+|+.+.|..+- .-|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 468999999995 45677788899999999987755 2222 3699999999996543 4499999999999998
Q ss_pred CCCCeeE------EEEe------cCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCe--------EEEEEeCCCCce
Q 002490 80 YKMHRCL------FTLL------GHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT--------CISVLTGHNHYV 138 (916)
Q Consensus 80 ~~~~~~~------~~l~------~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~--------~~~~~~~h~~~v 138 (916)
++.-... .... .....++++.|.+..+ .++.|+++|.|.--+....+ ....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 8643221 1111 1234688999998655 78899999988874433221 233556789999
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-
Q 002490 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP- 217 (916)
Q Consensus 139 ~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~- 217 (916)
.++.++|-+..++..+.|.+|++|.-..... ..+.+..+...+++++|||..+
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--------------------------Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--------------------------PLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCC--------------------------cchhhhhccceeeeeEEcCcCce
Confidence 9999999877555555599999999763111 2234555666799999999876
Q ss_pred EEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
.|+++..+|.+.+||+......++.+..-+....+.+.|++.|+.|++|...|++.+|++..
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 56777779999999998877666777766667778889999999999999999999999864
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.7e-14 Score=156.49 Aligned_cols=260 Identities=13% Similarity=0.166 Sum_probs=170.8
Q ss_pred EEEecCCeEEEEECCC-Cc--eEEEecccccCEEEEEEecCCCEEEEEE-CCCeEEEEECC-CCee--EEEEecCCCCEE
Q 002490 25 LASLHSGVIQLWDYRM-GT--LIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYK-MHRC--LFTLLGHLDYIR 97 (916)
Q Consensus 25 a~~~~dg~I~lwd~~~-~~--~~~~~~~h~~~V~~i~fsp~~~~l~s~~-~dg~I~vWd~~-~~~~--~~~l~~h~~~v~ 97 (916)
++...++.|.+||+.+ ++ .++.+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3346789999999964 43 455564 345677899999999886654 57899999997 3432 22222 334567
Q ss_pred EEEEcCCCCEEEEEEC-CCcEEEEeCCC-C---eEEEEEeCCCCceEEEEEecCCCEEEEEE-CCCeEEEEECCCCccee
Q 002490 98 TVQFHHEYPWIVSASD-DQTIRIWNWQS-R---TCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKT 171 (916)
Q Consensus 98 ~v~fs~~~~~l~s~s~-dg~I~iwd~~~-~---~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~v~vwd~~~~~~~~ 171 (916)
.++|+|+++++++++. ++.|.+|++.+ + +.+..+.+ .....+++++|+++++++++ .++.|.+||+.+.....
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999998888764 78999999863 2 22333332 23467788999999886554 56999999997632211
Q ss_pred ccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC-CCcEEEEECCC--CcceeeeeeecC-
Q 002490 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNE--TKAWEVDTLRGH- 247 (916)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~v~iwd~~~--~~~~~~~~~~~~- 247 (916)
.... ..... ........++|+|++++++++.. ++.|.+|++.. ++...+..+..+
T Consensus 163 ~~~~--------------------~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 163 AQEP--------------------AEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred ccCC--------------------Cceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 0000 00001 11234567899999999988876 89999999974 232223333221
Q ss_pred -----CCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCce----eEEeeccCCcEEEEEEecCCCeEEEEe
Q 002490 248 -----MNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGH 309 (916)
Q Consensus 248 -----~~~v~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~~~~la~g~ 309 (916)
......+.++|++++++++.. ++.|.+|++..... +..... ....+.++++|++++++++.
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEE
Confidence 112346889999999998854 68899999865432 222221 12345788888888887765
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=6.6e-16 Score=150.11 Aligned_cols=249 Identities=18% Similarity=0.237 Sum_probs=199.0
Q ss_pred ecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC---eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 002490 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (916)
Q Consensus 47 ~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~---~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~ 123 (916)
+.--..+|+|.+|++++..+|++.....|.||..... +..+++..|...|+.++|+|..+.|++|+.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3345679999999999999999999999999988754 4678899999999999999999999999999999999984
Q ss_pred C-C--eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEE
Q 002490 124 S-R--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (916)
Q Consensus 124 ~-~--~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (916)
+ + ++.-.+..++...+++.|+|.++.+++||.-..|.||-.+..+.--. .+..-
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV-----------------------sKhik 142 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV-----------------------SKHIK 142 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh-----------------------hhhhC
Confidence 3 2 44556677999999999999999999999999999998876432211 22344
Q ss_pred eccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC--------Ccce----e----eeeeecCCCCeEEEEEccCCCEEE
Q 002490 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--------TKAW----E----VDTLRGHMNNVSCVMFHAKQDIIV 264 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~--------~~~~----~----~~~~~~~~~~v~~l~~sp~~~~l~ 264 (916)
..+...|+++.|+|++-++++|+.|+..+++..-- ...| + +.......+.+..+.|+|+|..|+
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 55678899999999999999999999999986421 1111 0 222334567899999999999999
Q ss_pred EEeCCCcEEEEECCCCc-eeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEe
Q 002490 265 SNSEDKSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (916)
Q Consensus 265 s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~ 318 (916)
-.+.|+++.+-|..... .++......-+..++.|-.+...+++|.+.+-++|..
T Consensus 223 wv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVT 277 (361)
T ss_pred EecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEEe
Confidence 99999999999987654 4555555557788888988888888888766555443
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=9.8e-15 Score=144.91 Aligned_cols=313 Identities=17% Similarity=0.238 Sum_probs=213.8
Q ss_pred ccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEeCCCCeEE
Q 002490 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ--TIRIWNWQSRTCI 128 (916)
Q Consensus 51 ~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg--~I~iwd~~~~~~~ 128 (916)
...+..+.|+.+...|..|+.|| .++++.+..............|.-+-|+.. +++..+.+. .+++.+.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 44577788999999999999887 578887754443333323345666667654 566666554 4999999998888
Q ss_pred EEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCee
Q 002490 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (916)
Q Consensus 129 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (916)
..+. ....|.++.++. ++|+++-.+. |.|||++..+...... ....+..++.
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~------------------------t~~~n~~gl~ 133 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIE------------------------TTPPNPKGLC 133 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhh------------------------ccCCCccceE
Confidence 8876 467899999974 4666666554 9999999977654321 2234667777
Q ss_pred EEEEcCCCCEEEEEE--CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCc-EEEEECCCCceeEE
Q 002490 209 WAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-IRVWDVTKRTGVQT 285 (916)
Q Consensus 209 ~~~~~p~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~-i~vwd~~~~~~~~~ 285 (916)
++++++.+.+++.-+ ..|.|.+||..+-+. +..+..|.+++.+++|+++|.+||++++.|+ |||+.+.+|+.+.+
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEccccee--eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 778887777888654 468999999998886 8889999999999999999999999999998 79999999999999
Q ss_pred eeccC--CcEEEEEEecCCCeEEEEeC-CCceEEEecCCcc---e----EEe-cCCEE----EEEeCCeEEEEEccCCce
Q 002490 286 FRREH--DRFWILASHPEMNLLAAGHD-SGMIVFKLERERP---A----FAV-SGDSL----FYAKDRFLRYYEFSTQKD 350 (916)
Q Consensus 286 ~~~~~--~~i~~l~~sp~~~~la~g~~-~~~~v~~~~~~~~---~----~s~-~~~~l----~~~~d~~i~~~d~~~~~~ 350 (916)
|++.. ..|.+++|+|++.+|++.++ +.+.+|+++.... . ... .+... .+...+.-.+|+.. +.
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~--R~ 289 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS--RK 289 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc--cc
Confidence 98765 46889999999999987664 5567898876331 0 000 00000 00011222223332 33
Q ss_pred eeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCC
Q 002490 351 TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRG 404 (916)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~ 404 (916)
.....++..+. . .+..+.-.+....+.+++ .||.+..|.++....+.+
T Consensus 290 FAt~~l~~s~~-~---~~~~l~~~~~~~~v~vas--~dG~~y~y~l~~~~gGec 337 (391)
T KOG2110|consen 290 FATAKLPESGR-K---NICSLSSIQKIPRVLVAS--YDGHLYSYRLPPKEGGEC 337 (391)
T ss_pred eeEEEccCCCc-c---ceEEeeccCCCCEEEEEE--cCCeEEEEEcCCCCCcee
Confidence 33333333221 1 222333224566777666 458999999987655444
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6e-17 Score=165.48 Aligned_cols=300 Identities=16% Similarity=0.231 Sum_probs=228.0
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEec-ccccCEEEEEEecC--CCEEEEEECCCeEEEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKS--QPLFVSGGDDYKIKVW 78 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~-~h~~~V~~i~fsp~--~~~l~s~~~dg~I~vW 78 (916)
..+|.+|.+.|..+.|+..|.+|++|+.|..|.+||+..++....|. +|...|....|-|. ..-+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45899999999999999999999999999999999999998887774 79999998889874 3569999999999998
Q ss_pred ECC-CCeeE--EEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEE---eCCCC---ceEEEEEecCCC
Q 002490 79 NYK-MHRCL--FTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNH---YVMCASFHPKED 148 (916)
Q Consensus 79 d~~-~~~~~--~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~h~~---~v~~l~~~p~~~ 148 (916)
.+. ++.+. ..+..|.++|.-++.-|+.+ -|.+++.|+.+.-.|++.+.+...+ ..+.. ....++.+|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 765 33332 34567999999999999876 6889999999999999876544333 22333 467888888665
Q ss_pred -EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCc
Q 002490 149 -LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (916)
Q Consensus 149 -~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 227 (916)
.+++++.|..+++||.+...+......-. ............-.|++++|+.++.-++++..|-.
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~---------------~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLD---------------KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhh---------------hcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 89999999999999998765542211000 00011122234567999999988777777788889
Q ss_pred EEEEECCCCcc-----------eeeeeeecCCCC--eEEEE-EccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcE
Q 002490 228 VKLWRMNETKA-----------WEVDTLRGHMNN--VSCVM-FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (916)
Q Consensus 228 v~iwd~~~~~~-----------~~~~~~~~~~~~--v~~l~-~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i 293 (916)
|+++.-.-+.- ......++|.+. |.++- |-|...++++|+.-|.|.||+-.+++.++.+.+...-|
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 99995432211 112226788764 55665 46788999999999999999999999999988888889
Q ss_pred EEEEEecCCCeEEEEe-CCCceEE
Q 002490 294 WILASHPEMNLLAAGH-DSGMIVF 316 (916)
Q Consensus 294 ~~l~~sp~~~~la~g~-~~~~~v~ 316 (916)
.|+.-||.-.+||+.+ +..+.+|
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred eccCCCCCCchhhccCCccceeee
Confidence 9999999999998755 4333333
No 204
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=6.8e-14 Score=151.81 Aligned_cols=276 Identities=13% Similarity=0.142 Sum_probs=177.8
Q ss_pred EEEEECCCeEEEEECCC-Ce--eEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCC-CCeE--EEEEeCCCCce
Q 002490 66 FVSGGDDYKIKVWNYKM-HR--CLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQ-SRTC--ISVLTGHNHYV 138 (916)
Q Consensus 66 l~s~~~dg~I~vWd~~~-~~--~~~~l~~h~~~v~~v~fs~~~~~l~s~s-~dg~I~iwd~~-~~~~--~~~~~~h~~~v 138 (916)
+++...++.|.+|++.+ ++ .+.++. +.+....++++|++++|++++ .++.|.+|++. +++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44556789999999964 33 445554 345677899999999887664 47889999986 3432 22222 33456
Q ss_pred EEEEEecCCCEEEEEEC-CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC
Q 002490 139 MCASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217 (916)
Q Consensus 139 ~~l~~~p~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 217 (916)
..++|+|+++++++++. ++.|.+|++........ ...... +......++++|+++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----------------------~~~~~~-~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-----------------------PIQIIE-GLEGCHSANIDPDNR 138 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----------------------ceeecc-CCCcccEeEeCCCCC
Confidence 78999999998887764 78999999864211100 000111 223456788999999
Q ss_pred EEEEEE-CCCcEEEEECCCCccee-----eeeeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCC--C--ceeEEe
Q 002490 218 LIVSGA-DDRQVKLWRMNETKAWE-----VDTLRGHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTK--R--TGVQTF 286 (916)
Q Consensus 218 ~l~~~~-~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~s~~~-dg~i~vwd~~~--~--~~~~~~ 286 (916)
++++++ .++.|.+||+.+..... ..... .......+.|+|++++++++.+ +++|.+|++.. + +.++.+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 886555 56999999997633210 01111 2244678999999999988876 89999999973 2 223333
Q ss_pred eccC------CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCc-eeeeEEecCC
Q 002490 287 RREH------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK-DTQVIPIRRP 359 (916)
Q Consensus 287 ~~~~------~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~-~~~~~~~~~~ 359 (916)
.... .....+.++|++++++++.. .++.|.+|++.... ..........
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------------------------~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDR-------------------------TASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecC-------------------------CCCeEEEEEEeCCCCeEEEeEEEec
Confidence 2211 11224677788877776532 34667777775422 1111111111
Q ss_pred CCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 360 ~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
+. .+..+.++|+|++++++.. .++++.+|+++..
T Consensus 273 ~~-----~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~~ 306 (330)
T PRK11028 273 ET-----QPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDGE 306 (330)
T ss_pred cc-----cCCceEECCCCCEEEEEEc-cCCcEEEEEEcCC
Confidence 21 5678999999999988775 5689999998643
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.2e-15 Score=164.27 Aligned_cols=291 Identities=16% Similarity=0.237 Sum_probs=197.4
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecC---CCCEEEEEEcC--CCCEEEEEECCCcEEEEeCC----
Q 002490 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH---LDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQ---- 123 (916)
Q Consensus 53 ~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h---~~~v~~v~fs~--~~~~l~s~s~dg~I~iwd~~---- 123 (916)
+-+.+.|+|-.+.++++.+.-.|+|||.+.++++..+..+ ...|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4577889999999999988889999999999988777543 34788888875 34589999999999999642
Q ss_pred -CCeEEEEEeCC-------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccce
Q 002490 124 -SRTCISVLTGH-------NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (916)
Q Consensus 124 -~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (916)
..+.+....+- .+.=.-+.|.....+|++++.-..|+|||..........|
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP--------------------- 1204 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP--------------------- 1204 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc---------------------
Confidence 22333332211 1111335676655677777778999999998755443322
Q ss_pred EEEEEeccCCCeeEEEEc-CCCCEEEEEECCCcEEEEECCCCcc-eeeeeeecCCCC--eEEEEEccCCCE-EEEEeCCC
Q 002490 196 VKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNN--VSCVMFHAKQDI-IVSNSEDK 270 (916)
Q Consensus 196 ~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~--v~~l~~sp~~~~-l~s~~~dg 270 (916)
.+.+..++++.-+ +.|+.+++|..||.|++||.+.... ..+...+.|+.. |..+.+.+.|-- |++|+.+|
T Consensus 1205 -----~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1205 -----YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred -----cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 2334455555443 3478999999999999999876543 236677888887 999999987654 99999999
Q ss_pred cEEEEECCCCceeE--EeeccC--C-cEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEc
Q 002490 271 SIRVWDVTKRTGVQ--TFRREH--D-RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEF 345 (916)
Q Consensus 271 ~i~vwd~~~~~~~~--~~~~~~--~-~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~ 345 (916)
.|++||++...... ++..+. + ..+++..|++..++|+|+...+.+|++
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~--------------------------- 1332 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSL--------------------------- 1332 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEec---------------------------
Confidence 99999998742221 122221 3 489999999999999998644444444
Q ss_pred cCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
...+...+......-... -..+.+++|+|..-.+ +.+..|..|.||..++.
T Consensus 1333 ~G~~l~~~k~n~~F~~q~-~gs~scL~FHP~~~ll--AaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQR-IGSVSCLAFHPHRLLL--AAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ChhhhcccccCcccccCc-CCCcceeeecchhHhh--hhccCCceEEEeecCCc
Confidence 332211111100000001 2267899999985433 33357789999987554
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=9.7e-15 Score=161.15 Aligned_cols=279 Identities=15% Similarity=0.176 Sum_probs=197.7
Q ss_pred CeEEEEECCCC-eeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeE--EEE----EeCCCCceEEEEEe
Q 002490 73 YKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTC--ISV----LTGHNHYVMCASFH 144 (916)
Q Consensus 73 g~I~vWd~~~~-~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~--~~~----~~~h~~~v~~l~~~ 144 (916)
+.+.||+++.. .+-..+ .-...|+++.|+|..+ +++.|+.+|.|.+||++.+.. ... ...|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333333 3577899999999655 778888999999999986654 222 23688899999997
Q ss_pred cCCC--EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC-CEEEE
Q 002490 145 PKED--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVS 221 (916)
Q Consensus 145 p~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~ 221 (916)
.+.. -+++++.||.|..|+++............... -+..-.....+++++.|.|.. ..+++
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~---------------~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK---------------HKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhccccccc---------------ccccccccccceeeEeeccCCCceEEE
Confidence 7554 49999999999999887754422111000000 000011223568899999854 47899
Q ss_pred EECCCcEEEEECCCCccee------eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeEEeeccCCcEE
Q 002490 222 GADDRQVKLWRMNETKAWE------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT-KRTGVQTFRREHDRFW 294 (916)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~ 294 (916)
|+++|.|.--.....+... ......|.++|.++.++|-+..++..+.|.++++|... ...++..+..+.+.+.
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~ 445 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT 445 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee
Confidence 9999998774433332211 34566789999999999987766666669999999987 6677777887888899
Q ss_pred EEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEc
Q 002490 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS 374 (916)
Q Consensus 295 ~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 374 (916)
.++|||....+.+..+ .+|.+.+||+......++...+... . ....+.|+
T Consensus 446 ~vaWSptrpavF~~~d-------------------------~~G~l~iWDLl~~~~~Pv~s~~~~~--~---~l~~~~~s 495 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVD-------------------------GDGNLDIWDLLQDDEEPVLSQKVCS--P---ALTRVRWS 495 (555)
T ss_pred eeEEcCcCceEEEEEc-------------------------CCCceehhhhhccccCCcccccccc--c---ccceeecC
Confidence 9999997764443332 5688999999987777766655432 2 66778888
Q ss_pred CCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 375 PTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 375 p~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
+.|+.+++ ++ ..|.+.+|+++..
T Consensus 496 ~~g~~lav-Gd-~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 496 PNGKLLAV-GD-ANGTTHILKLSES 518 (555)
T ss_pred CCCcEEEE-ec-CCCcEEEEEcCch
Confidence 88886544 33 6789999999644
No 207
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=8.7e-16 Score=145.09 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=187.0
Q ss_pred eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 43 ~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
....+++|.+.|+++.|-.+++ |.+|...|.|++|++++.+....+. .|...|+.+.--|++ .+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEE
Confidence 4456778999999999988775 8999999999999999998888887 577789999888874 588888999999998
Q ss_pred CCCCeEEE--------------EE---------------------------------------eCCCCceEEEEEecC-C
Q 002490 122 WQSRTCIS--------------VL---------------------------------------TGHNHYVMCASFHPK-E 147 (916)
Q Consensus 122 ~~~~~~~~--------------~~---------------------------------------~~h~~~v~~l~~~p~-~ 147 (916)
+.-+..+. .+ .+..+.++|..+..+ +
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 76421110 00 011234555554322 2
Q ss_pred C--EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC
Q 002490 148 D--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 148 ~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 225 (916)
. +++.|.++|.|.+||++.+.+....+. ...+......|..+|.++.|.+.-..=++|+.+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------------~~kv~~~~ash~qpvlsldyas~~~rGisgga~ 226 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------------SSKVESPNASHKQPVLSLDYASSCDRGISGGAD 226 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeecccc-----------------ccccccchhhccCcceeeeechhhcCCcCCCcc
Confidence 2 677888999999999998644332221 111333456789999999999876666778888
Q ss_pred CcEEEEECCCCcc-eeee-eeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCC
Q 002490 226 RQVKLWRMNETKA-WEVD-TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN 303 (916)
Q Consensus 226 g~v~iwd~~~~~~-~~~~-~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 303 (916)
..+..|+++.... .++. ...-..-.|..+..-||++.+++++.|+.||||..++..++..++.|.+.+.+++|+|+.+
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 8888998865421 1111 1222234578889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEe
Q 002490 304 LLAAGH 309 (916)
Q Consensus 304 ~la~g~ 309 (916)
++|+++
T Consensus 307 lmAaas 312 (323)
T KOG0322|consen 307 LMAAAS 312 (323)
T ss_pred hhhhcc
Confidence 999887
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.1e-15 Score=168.60 Aligned_cols=233 Identities=13% Similarity=0.058 Sum_probs=168.6
Q ss_pred CCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC---CeEEEEECCCCee--EEEEecCCCCEEEEEEcCC
Q 002490 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHE 104 (916)
Q Consensus 30 dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d---g~I~vWd~~~~~~--~~~l~~h~~~v~~v~fs~~ 104 (916)
+..|.+||+... ..+.+..|...+.+.+|||+|+.|+.++.+ ..|.+||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 468999997544 456677888899999999999999987643 4799999988754 3333333 346899999
Q ss_pred CCEEEEEE-CCCcEEEE--eCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE-CCCeEEEEECCCCcceeccCCcccee
Q 002490 105 YPWIVSAS-DDQTIRIW--NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILR 180 (916)
Q Consensus 105 ~~~l~s~s-~dg~I~iw--d~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~ 180 (916)
|++|+.++ .+|.+.|| |+.+++ ...+..+...+.+..|+|+|+.|+.++ .++..++|++......
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------- 327 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------- 327 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------
Confidence 99888764 57765555 665655 455666777788999999999777655 5788888886542111
Q ss_pred eccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCC
Q 002490 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (916)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 260 (916)
.. .+ .+.. ....|+|+|+.|+.++.++ +.+||+.+++.. .+..+ ....++.|+|+|
T Consensus 328 ---------------~~-~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---~lt~~-~~~~~~~~sPdG 383 (429)
T PRK01742 328 ---------------AS-LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---VLSST-FLDESPSISPNG 383 (429)
T ss_pred ---------------eE-Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---EecCC-CCCCCceECCCC
Confidence 00 11 2222 4578999999998887755 566999887642 22111 123567899999
Q ss_pred CEEEEEeCCCcEEEEEC--CCCceeEEeeccCCcEEEEEEecC
Q 002490 261 DIIVSNSEDKSIRVWDV--TKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 261 ~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
++|+.++.++.+.+|.+ .++...+.+..+.+.+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 99999999998888875 357778888777788888999884
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.2e-16 Score=157.53 Aligned_cols=196 Identities=15% Similarity=0.247 Sum_probs=158.2
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec-
Q 002490 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG- 91 (916)
Q Consensus 13 ~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~- 91 (916)
.+++|+++|..|++|+.||+++||++.+...+.....|.+.|.++.|+|||++|++.+.| ..+||+..++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999998888888888999999999999999999999999 999999999987776652
Q ss_pred -CCCCEEEEEEcCCC---C--EEEEEECCCcEEEEeCCCCeE-----EEEEeCCCCceEEEEEecCCCEEEEEECCCeEE
Q 002490 92 -HLDYIRTVQFHHEY---P--WIVSASDDQTIRIWNWQSRTC-----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (916)
Q Consensus 92 -h~~~v~~v~fs~~~---~--~l~s~s~dg~I~iwd~~~~~~-----~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~ 160 (916)
.......+.|+.++ . .++.....+.|+.|++..... ..........|.+++.+++|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23356677888777 2 233334445666665532211 111122335799999999999999999999999
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~ 235 (916)
+++....+. +.++.+.|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 307 i~~~~~lq~--------------------------~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQR--------------------------LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeee--------------------------eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999988654 3456778999999999999999999999999888887654
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=3.4e-15 Score=145.19 Aligned_cols=253 Identities=16% Similarity=0.167 Sum_probs=188.4
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~---~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~ 80 (916)
.|..--.+|+|.+|++|+..+|++..+..|.||..... +..++++.|+..|++|+|+|..+.|++++.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445679999999999999999999999999997655 467889999999999999999999999999999999998
Q ss_pred -CCC--eeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE----EEEeCCCCceEEEEEecCCCEEEEE
Q 002490 81 -KMH--RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI----SVLTGHNHYVMCASFHPKEDLVVSA 153 (916)
Q Consensus 81 -~~~--~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~----~~~~~h~~~v~~l~~~p~~~~l~s~ 153 (916)
..+ ++...+..+....+++.|+|.++.|+++|....|.||-.+...-- ..-+.+.+.|.++.|+|++-+|+.|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 433 344556678999999999999999999999999999977643322 1224467789999999999999999
Q ss_pred ECCCeEEEEECC--CCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEE
Q 002490 154 SLDQTVRVWDIG--ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (916)
Q Consensus 154 s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iw 231 (916)
+.|+..|++..- ....+...+ +..+..-||. +........+.+..+.|+|+|..|+-.+.|.++.+-
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~-------pWgsk~PFG~----lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPT-------PWGSKMPFGQ----LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCC-------CCccCCcHHH----HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 999999999742 211111100 0111111111 111222456789999999999999999999999999
Q ss_pred ECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCC
Q 002490 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (916)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d 269 (916)
|....... +..+....-+..++.|-.+. .++.++.|
T Consensus 234 da~~p~~~-v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 234 DAAGPSER-VQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ecCCCchh-ccchhhccCCceeeEeecCC-ceeecCCC
Confidence 98876531 33333333666777776444 34555555
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=2.4e-16 Score=160.15 Aligned_cols=269 Identities=17% Similarity=0.215 Sum_probs=218.0
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~ 90 (916)
.-..+.++.+|+.|+.|+..|.|..+|+.++++...+. -...|+.+.|-.+.+++|++-. ..+.|||- .|..++.+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeehh
Confidence 34578899999999999999999999999999998886 3557899999888888888764 57999994 577777777
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcce
Q 002490 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 91 ~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
.| ..|..+.|-|..-+|++++..|.++--|+.+|+.+..+..-.+.+..+.-+|-...+-+|...|+|.+|.....+..
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 54 45889999999989999999999999999999999999888889999999998889999999999999998775432
Q ss_pred eccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCC
Q 002490 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN 250 (916)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 250 (916)
..+..|.++|.++++.++|+++++++.|+.++|||++.... +.+... .-+
T Consensus 287 ---------------------------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--l~t~~t-p~~ 336 (545)
T KOG1272|consen 287 ---------------------------VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--LHTYRT-PHP 336 (545)
T ss_pred ---------------------------HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--cceeec-CCC
Confidence 24556999999999999999999999999999999998774 555544 345
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEE-CCCCc--eeEEe--eccCCcEEEEEEecCCCeEEEEeCCCceE
Q 002490 251 VSCVMFHAKQDIIVSNSEDKSIRVWD-VTKRT--GVQTF--RREHDRFWILASHPEMNLLAAGHDSGMIV 315 (916)
Q Consensus 251 v~~l~~sp~~~~l~s~~~dg~i~vwd-~~~~~--~~~~~--~~~~~~i~~l~~sp~~~~la~g~~~~~~v 315 (916)
...+++|..| +++.+....+.+|. .-.+. .-..+ ....+.|..+.|.|-..+|.+|+.+|+.-
T Consensus 337 a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 337 ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 6778888666 44445556799994 22211 11111 12345889999999999999999888753
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=3.2e-13 Score=145.67 Aligned_cols=318 Identities=13% Similarity=0.113 Sum_probs=203.6
Q ss_pred CEEE-EEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEE
Q 002490 22 PWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (916)
Q Consensus 22 ~~la-~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~ 100 (916)
++++ +-..+|.|.+.|..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++.. ......++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 4454 444689999999999999999986554445678999999999999999999999999999999875 44568899
Q ss_pred EcCCCCEEEEEE-CCCcEEEEeCCCCeEEEEEeCC-------CCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCccee
Q 002490 101 FHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGH-------NHYVMCASFHPKEDLVVSASL-DQTVRVWDIGALRKKT 171 (916)
Q Consensus 101 fs~~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~l~s~s~-dg~v~vwd~~~~~~~~ 171 (916)
+++||++++++. ..+.+.++|.++.+.+..+... ...+.++..+|....++..-. .+.|.+.|....+..
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~- 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL- 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-
Confidence 999999888765 5899999999999998877532 346778888888886665555 488888887664321
Q ss_pred ccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEE-ECCCcEEEEECCCCcceeeeeee----c
Q 002490 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTLR----G 246 (916)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~----~ 246 (916)
...............|+|++++++++ ..++.|.++|..+.+. +..+. .
T Consensus 164 -------------------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~--v~~i~~g~~p 216 (369)
T PF02239_consen 164 -------------------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL--VALIDTGKKP 216 (369)
T ss_dssp -------------------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE--EEEEE-SSSB
T ss_pred -------------------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceE--EEEeeccccc
Confidence 11222234456678999999987765 4567899999988775 22221 2
Q ss_pred CCCCeEEEEEcc----------CCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEE
Q 002490 247 HMNNVSCVMFHA----------KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 247 ~~~~v~~l~~sp----------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
|..+...+ .|| .+...++.-....+.+||..+.+.++++...... ..+..||+++++.+..-.+-
T Consensus 217 ~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~--- 291 (369)
T PF02239_consen 217 HPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP--- 291 (369)
T ss_dssp EETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S---
T ss_pred cccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC---
Confidence 33333322 122 2223322222335668999999999999987777 78889999999988721110
Q ss_pred EecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 317 ~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
..++|.++|..+.+....+.... + . .+..+.|+++|+.+.++....++.+.+|+.
T Consensus 292 -------------------~~~~v~viD~~tl~~~~~i~~~~-~--~---~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 292 -------------------DADTVQVIDKKTLKVVKTITPGP-G--K---RVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp -------------------SHT-EEEEECCGTEEEE-HHHHH-T-------EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred -------------------CCceEEEEECcCcceeEEEeccC-C--C---cEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 23778999988864433322111 1 1 488899999999988887755568999986
Q ss_pred eC
Q 002490 397 PK 398 (916)
Q Consensus 397 ~~ 398 (916)
..
T Consensus 347 ~T 348 (369)
T PF02239_consen 347 KT 348 (369)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-14 Score=164.09 Aligned_cols=227 Identities=18% Similarity=0.255 Sum_probs=165.6
Q ss_pred EECCCCceEEEecccccCEEEEEEecCC-CEEEEEECCCeEEEEECCC-------CeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 36 WDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM-------HRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 36 wd~~~~~~~~~~~~h~~~V~~i~fsp~~-~~l~s~~~dg~I~vWd~~~-------~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
|+. .|.++..+..|...|..++.++.. .+|+|||+||+|++|+... .+...++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 774 688999999999999999997755 9999999999999999862 2344455556778999999999999
Q ss_pred EEEEECCCcEEEEeCCCC-------eEEEEEeCC-CCceEE-EEEec-CCC-EEEEEECCCeEEEEECCCCcceeccCCc
Q 002490 108 IVSASDDQTIRIWNWQSR-------TCISVLTGH-NHYVMC-ASFHP-KED-LVVSASLDQTVRVWDIGALRKKTVSPAD 176 (916)
Q Consensus 108 l~s~s~dg~I~iwd~~~~-------~~~~~~~~h-~~~v~~-l~~~p-~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 176 (916)
+|.++.||.|++.++... .+......+ .+.+.+ -+|.. .+. .++.+..-+.|..||++.......
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~---- 1188 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR---- 1188 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh----
Confidence 999999999999988641 112222222 223333 33332 223 788888899999999987554322
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEE
Q 002490 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256 (916)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 256 (916)
.......+.|++++.+|.++++++|+..|.+.+||++-+....-.. .++..++..+..
T Consensus 1189 ---------------------lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1189 ---------------------LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWL 1246 (1431)
T ss_pred ---------------------hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEe
Confidence 1233345789999999999999999999999999999877622222 234467777777
Q ss_pred ccC---CCEEEEEe--CCCcEEEEECCCCceeEEeecc
Q 002490 257 HAK---QDIIVSNS--EDKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 257 sp~---~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~ 289 (916)
+|- ....++++ ..+.|.+|++.+|.+...+...
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 763 34555554 4677999999999777776544
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=9.6e-16 Score=158.48 Aligned_cols=228 Identities=18% Similarity=0.252 Sum_probs=167.1
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEec-ccccCEEEEEEec--CCCEEEEEECCCeEEEEE
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~-~h~~~V~~i~fsp--~~~~l~s~~~dg~I~vWd 79 (916)
+.|+||++-|.|+.|+.+|.+|++|+.|-.+.|||+-..+++..+. +|.+.|.++.|-| +.++++||..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4689999999999999999999999999999999998888888774 8999999999988 456899999999999999
Q ss_pred CCCC----------eeEEEEecCCCCEEEEEEcCCC-CEEEEEECCCcEEEEeCCCCe-------EEEE---EeCCCCce
Q 002490 80 YKMH----------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRT-------CISV---LTGHNHYV 138 (916)
Q Consensus 80 ~~~~----------~~~~~l~~h~~~v~~v~fs~~~-~~l~s~s~dg~I~iwd~~~~~-------~~~~---~~~h~~~v 138 (916)
+... ...+.+..|...|..++-.|++ ..+.+++.||+|+-+|++... +... +...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9842 2344456789999999999999 488999999999999997521 1111 11112346
Q ss_pred EEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEecc-----------CCC
Q 002490 139 MCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-----------DRG 206 (916)
Q Consensus 139 ~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 206 (916)
.|+..+|... +|++|+.|-..++||.+...+............+ .....+.+...+| -..
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp--------~~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPP--------KDCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCC--------cccchhheecCccccCcccccccceee
Confidence 7889999754 8999999999999997543332211110000000 0000111111111 123
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 207 v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
++-++|+|+|.-|++.-..-.|+++|++..+.
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 56789999998888777777899999988775
No 215
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.65 E-value=2e-11 Score=139.25 Aligned_cols=303 Identities=12% Similarity=0.102 Sum_probs=174.5
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
.+.|.++.|..+..-++++...|.|.+-|.++....- ...-+..|.+++||||+..++..+..+++.+-.. +..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 3689999999999999999999999999987664322 2235678999999999999999988877766543 2222221
Q ss_pred Eec-----CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE-EEEEeCCCCceEEEEEecCCCEEEEEE-----CCC
Q 002490 89 LLG-----HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKEDLVVSAS-----LDQ 157 (916)
Q Consensus 89 l~~-----h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~~p~~~~l~s~s-----~dg 157 (916)
..- ..+..-.+-|-...+.+ .|+ .|...-.+...... +.....+++. +++.|-.||.++++.. ..+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~-~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDHK-TSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccCC-ceEEEccCCcEEEEEEEeccCCce
Confidence 111 11222333443322211 111 11111111111100 0111122232 4689999999988833 237
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE---CCCcEEEEECC
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA---DDRQVKLWRMN 234 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~dg~v~iwd~~ 234 (916)
.|++||-.+ .... .-+...+--.+++|-|.|.++++-. +|+.|.+|..+
T Consensus 223 kirV~drEg-~Lns---------------------------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 223 KIRVYDREG-ALNS---------------------------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eEEEecccc-hhhc---------------------------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 899999873 1111 1112233345789999999888764 46679999876
Q ss_pred CCcceee-eeeecCCCCeEEEEEccCCCEEEE---EeCCCcEEEEECCCCce--eEEeeccCCcEEEEEEecCC--CeEE
Q 002490 235 ETKAWEV-DTLRGHMNNVSCVMFHAKQDIIVS---NSEDKSIRVWDVTKRTG--VQTFRREHDRFWILASHPEM--NLLA 306 (916)
Q Consensus 235 ~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s---~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~~--~~la 306 (916)
.-..-.. ...+.....+..++|+.++..|++ ......|++|-+.+..- .+.+....... +.|+|.. ++.+
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v 352 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHV 352 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEE
Confidence 5442111 112222334899999999999988 55555699999876542 23333333222 7888843 2333
Q ss_pred EEeCCCceEEEecCCcceE-EecCCEEEEEeCCeEEEEEccC
Q 002490 307 AGHDSGMIVFKLERERPAF-AVSGDSLFYAKDRFLRYYEFST 347 (916)
Q Consensus 307 ~g~~~~~~v~~~~~~~~~~-s~~~~~l~~~~d~~i~~~d~~~ 347 (916)
.+-.+...++++.... .+ ..++...++.....+.+.++.-
T Consensus 353 ~~~sG~~~v~~~~~~t-~~s~~d~S~~~VIDgs~llvT~ls~ 393 (1265)
T KOG1920|consen 353 LRESGQRLVRDFAWTT-DRSPNDGSTVYVIDGSRLLVTPLSL 393 (1265)
T ss_pred EecCCcEEEEEEEEee-eccCCCCceEEEEeCCEEEEecchh
Confidence 4323333333332211 12 2333455555778888887764
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=6e-13 Score=143.57 Aligned_cols=334 Identities=13% Similarity=0.081 Sum_probs=203.9
Q ss_pred EEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec
Q 002490 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145 (916)
Q Consensus 66 l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p 145 (916)
+++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+++.+.++... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 355667899999999999999999865554455789999999999999999999999999999988753 4568899999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE-
Q 002490 146 KEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA- 223 (916)
Q Consensus 146 ~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~- 223 (916)
+|++++++. ..+.+.++|.++++.....+.. ..........+..+..+|..+.++..-
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~--------------------~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTG--------------------GMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE----------------------EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccc--------------------cccccccCCCceeEEecCCCCEEEEEEc
Confidence 999888765 6899999999987765432210 000111345677888888888666554
Q ss_pred CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeEEeec----cCCcEEEEEE
Q 002490 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN-SEDKSIRVWDVTKRTGVQTFRR----EHDRFWILAS 298 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~ 298 (916)
+.+.|.+.|....+......+ ..........|+|++++++++ ..+..|.++|..+++.+..+.. +..+...+ .
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-p 225 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-P 225 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-E
T ss_pred cCCeEEEEEeccccccceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-c
Confidence 458888889887765333333 334567789999999987765 4566899999999887766543 22333332 3
Q ss_pred ecCC-CeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCC
Q 002490 299 HPEM-NLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (916)
Q Consensus 299 sp~~-~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~ 377 (916)
||.. ...++++.....+ .......+.+|+..+.+.+..+.... ....+..+|++
T Consensus 226 hp~~g~vw~~~~~~~~~~-----------------~~ig~~~v~v~d~~~wkvv~~I~~~G--------~glFi~thP~s 280 (369)
T PF02239_consen 226 HPGFGPVWATSGLGYFAI-----------------PLIGTDPVSVHDDYAWKVVKTIPTQG--------GGLFIKTHPDS 280 (369)
T ss_dssp ETTTEEEEEEEBSSSSEE-----------------EEEE--TTT-STTTBTSEEEEEE-SS--------SS--EE--TT-
T ss_pred CCCcceEEeeccccceec-----------------ccccCCccccchhhcCeEEEEEECCC--------CcceeecCCCC
Confidence 4432 2233333221111 11133445567777777777776654 33678889999
Q ss_pred CEEEEE---EcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEE--cCCCEEEEEccCC-ceEEEee
Q 002490 378 NAVLIC---SDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLD--KSSNQVLVKNLKN-EVVKKSI 450 (916)
Q Consensus 378 ~~llv~---~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~--~~d~~I~iwdl~~-~~~~~i~ 450 (916)
+++.+. +. +.+.+.+++......... ........+..+.|+++|+++..+ ..++.|.|+|..+ +.++++.
T Consensus 281 ~~vwvd~~~~~-~~~~v~viD~~tl~~~~~--i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 281 RYVWVDTFLNP-DADTVQVIDKKTLKVVKT--ITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SEEEEE-TT-S-SHT-EEEEECCGTEEEE---HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEEeeccCCC-CCceEEEEECcCcceeEE--EeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 998887 33 457899998865422111 011122247788999999865444 3234799998885 5666666
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.2e-13 Score=136.53 Aligned_cols=312 Identities=15% Similarity=0.203 Sum_probs=195.1
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecc-cccCEEEEEEecCC-CEEEEEECCCeEEEEECCC----C
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM----H 83 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~-h~~~V~~i~fsp~~-~~l~s~~~dg~I~vWd~~~----~ 83 (916)
..+..++||+.-..+|++..|-+|++|+-+. +....++. ....|+|++|-|.+ .-|+.|+. +-|++|.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4578899999888899999999999999554 66666652 45679999999965 45666665 4699998652 1
Q ss_pred ee----------EEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEE
Q 002490 84 RC----------LFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (916)
Q Consensus 84 ~~----------~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 152 (916)
+. +..-.+| .+|+++.|++||..+++++. |..|.|||..++.++.......+.+.-+.|+||+++|+.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1122344 68999999999999998875 568999999999887766445667888999999999999
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd 232 (916)
++-|+..++|+....-... ...--.+.|...+|+|.|+.|+.... |.-++|.
T Consensus 256 At~davfrlw~e~q~wt~e---------------------------rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKE---------------------------RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred ecccceeeeehhcccceec---------------------------ceeccCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 9999999999754422111 11112348999999999998776653 4444554
Q ss_pred CCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCC
Q 002490 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
+..... -....+ .++.-...-+-|+..-.....-+.-.+...+++|.|.|.++|+...++
T Consensus 308 l~f~~~--~~~~~~------------------~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 308 LTFDGE--DSVFLR------------------PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred EeecCC--CccccC------------------cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 432221 000000 111111222333322111111122346778999999999999876544
Q ss_pred ceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCC---CCEEEEEEcCCCC
Q 002490 313 MIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT---ENAVLICSDVDGG 389 (916)
Q Consensus 313 ~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~---~~~llv~~~~~~g 389 (916)
-.+-. ....|..||...............+. . .+..++|+|- +..+.++- ..|
T Consensus 368 ~~v~~------------------~k~~i~~fdtr~sp~vels~cg~i~g-e---~P~~IsF~pl~n~g~lLsiaW--sTG 423 (445)
T KOG2139|consen 368 SFVLL------------------CKLHISRFDTRKSPPVELSYCGMIGG-E---YPAYISFGPLKNEGRLLSIAW--STG 423 (445)
T ss_pred chhhh------------------hhhhhhhhcccccCceEEEecccccC-C---CCceEEeeecccCCcEEEEEe--ccC
Confidence 32111 12345666665443333322221111 2 5667777763 33333322 336
Q ss_pred EEEEEEe
Q 002490 390 SYELYVI 396 (916)
Q Consensus 390 ~i~i~~~ 396 (916)
.+.-|.+
T Consensus 424 riq~ypl 430 (445)
T KOG2139|consen 424 RIQRYPL 430 (445)
T ss_pred ceEeeee
Confidence 7776665
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.1e-14 Score=163.02 Aligned_cols=217 Identities=11% Similarity=0.088 Sum_probs=155.4
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCce--EEEecccccCEEEEEEecCCCEEEEEE-CCCeEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKV 77 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~d---g~I~lwd~~~~~~--~~~~~~h~~~V~~i~fsp~~~~l~s~~-~dg~I~v 77 (916)
.+..|...+.+.+|||||++|+.++.+ ..|.+||+.+++. +..+.+| ...++|+|+|+.|+.++ .+|.+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEE
Confidence 456677889999999999999887643 4799999988753 3334444 34689999999888765 5776655
Q ss_pred E--ECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEeCCCC-eEEEEEeCCCCceEEEEEecCCCEEEEE
Q 002490 78 W--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSA 153 (916)
Q Consensus 78 W--d~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s-~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 153 (916)
| |+.++. ...+..+...+....|+|||+.|+.++ .++...||++... .....+ .+.. .+..|+|+|+.|+.+
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEE
Confidence 5 665554 455666777888999999999877665 5678888876432 222223 3433 457899999999888
Q ss_pred ECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEEC
Q 002490 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (916)
Q Consensus 154 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~ 233 (916)
+.++ +.+||+.++..... ...+ ....+.|+|+|+.|++++.++.+.+|.+
T Consensus 351 ~~~~-i~~~Dl~~g~~~~l---------------------------t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVL---------------------------SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred cCCC-EEEEECCCCCeEEe---------------------------cCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 8765 55699877543211 1111 2245789999999999999998888875
Q ss_pred C--CCcceeeeeeecCCCCeEEEEEccC
Q 002490 234 N--ETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 234 ~--~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
. +++. ...+..|.+.+...+|+|-
T Consensus 401 ~~~~G~~--~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRF--KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCc--eEEccCCCCCCCCcccCCC
Confidence 3 3443 6777788888899999984
No 219
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=2.2e-14 Score=137.55 Aligned_cols=233 Identities=16% Similarity=0.251 Sum_probs=173.4
Q ss_pred ccCCCEEEEEEeCCCC-----EEEEEecCCeEEEEECCC--Cce--EEE-----ecccccCEEEEEEec-CCCEEEEEEC
Q 002490 7 TKSNRVKGLSFHSKRP-----WILASLHSGVIQLWDYRM--GTL--IDR-----FDEHDGPVRGVHFHK-SQPLFVSGGD 71 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~-----~la~~~~dg~I~lwd~~~--~~~--~~~-----~~~h~~~V~~i~fsp-~~~~l~s~~~ 71 (916)
.|.-+++.+.|.|+.. +||++ +..++||.+.. .+. ... -..+.+++++..|+. +-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4677899999999763 55554 45799999863 221 111 135788999999987 4567888999
Q ss_pred CCeEEEEECCCCee---EEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEE---eCCCCceEEEEEe
Q 002490 72 DYKIKVWNYKMHRC---LFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFH 144 (916)
Q Consensus 72 dg~I~vWd~~~~~~---~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~~ 144 (916)
|.+..|||++++.. ...+-.|...|..++|...+. .+++++.||.+|++|++..+....+ .....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999998633 456778999999999998664 8899999999999999876543333 2335678889998
Q ss_pred cCC-CEEEEEECC-CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-CCEEEE
Q 002490 145 PKE-DLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVS 221 (916)
Q Consensus 145 p~~-~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~ 221 (916)
+.. +++++-..| ..|.+.|++.... ....+.+|...|+.++|.|. ...|++
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~t--------------------------pva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCT--------------------------PVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCc--------------------------ceehhhcCcccccceEecCCCCceeee
Confidence 865 466665444 5699999987332 34578899999999999995 468999
Q ss_pred EECCCcEEEEECCCCcc----eeeeeeecCCCCeEEEEEcc-CCCEEEEEeC
Q 002490 222 GADDRQVKLWRMNETKA----WEVDTLRGHMNNVSCVMFHA-KQDIIVSNSE 268 (916)
Q Consensus 222 ~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~l~~sp-~~~~l~s~~~ 268 (916)
+++|.++.+||+...-. -++.... ..+.|..+.|++ ...+|+.+..
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 99999999999876432 0111122 456799999996 5677877764
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=4.6e-14 Score=159.56 Aligned_cols=256 Identities=16% Similarity=0.159 Sum_probs=177.2
Q ss_pred CcccccccCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCCC-------ceEEEecccccCEEEEEEecCCCEEEEEECC
Q 002490 1 MLTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD 72 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~-~~la~~~~dg~I~lwd~~~~-------~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d 72 (916)
++.+|..|+..|..++.++.. .++++|+.||+|++||.+.- +...++..-.+++.++.+.+.+..+|.++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 356788999999999988755 99999999999999998532 2233444457789999999999999999999
Q ss_pred CeEEEEECCCC--e-----eEEEEecC--CCCEEEEEEcC-CCC-EEEEEECCCcEEEEeCCCCeEEEEEe--CCCCceE
Q 002490 73 YKIKVWNYKMH--R-----CLFTLLGH--LDYIRTVQFHH-EYP-WIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVM 139 (916)
Q Consensus 73 g~I~vWd~~~~--~-----~~~~l~~h--~~~v~~v~fs~-~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~ 139 (916)
|.|.+.++... + +......+ ...|..-+|.. .+. .++.+..-+.|..||.+......+++ ...+.|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999998751 1 11111222 22344444443 233 78888889999999998766555443 3347899
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC---
Q 002490 140 CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--- 216 (916)
Q Consensus 140 ~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--- 216 (916)
+++.+|-++++++|+..|.+.+||++-...... .-.++..++..+..+|..
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~s--------------------------w~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS--------------------------WEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeec--------------------------ccCcccCCcceEEeeccCCCC
Confidence 999999999999999999999999986443221 222344667777776643
Q ss_pred CEEEEEE--CCCcEEEEECCCCcceeeeeee-----------------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 002490 217 PLIVSGA--DDRQVKLWRMNETKAWEVDTLR-----------------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 217 ~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~-----------------~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~ 277 (916)
...++++ ..+.|.+|++.++....+.... .+.-......+...+..+++|+.|..||.||.
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 3444444 4678999999987652111111 11111122333345668999999999999998
Q ss_pred CCCce
Q 002490 278 TKRTG 282 (916)
Q Consensus 278 ~~~~~ 282 (916)
.....
T Consensus 1334 ~~p~~ 1338 (1431)
T KOG1240|consen 1334 TRPEI 1338 (1431)
T ss_pred CCccc
Confidence 75543
No 221
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-13 Score=147.82 Aligned_cols=465 Identities=12% Similarity=0.179 Sum_probs=274.9
Q ss_pred cccccccCCCEEEEEEeCC------------CCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecC---C-CE
Q 002490 2 LTKFETKSNRVKGLSFHSK------------RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---Q-PL 65 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~------------~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~---~-~~ 65 (916)
++.++-|...|+.+.|.|- ..+||++..+|.|.+||...+..+..+..|..+|..++|-+. . .+
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~ 127 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDV 127 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhe
Confidence 6788999999999999873 236788888999999999999999999999999999999763 3 35
Q ss_pred EEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCC-CCEEEEEEC-------------------------------
Q 002490 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE-YPWIVSASD------------------------------- 113 (916)
Q Consensus 66 l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~-~~~l~s~s~------------------------------- 113 (916)
|+.......|.+||..+|+.............|+.+.|- .+.+...+.
T Consensus 128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred eEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 666666779999999998876655433334444444441 112222222
Q ss_pred -------------------------------------------CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCC--C
Q 002490 114 -------------------------------------------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE--D 148 (916)
Q Consensus 114 -------------------------------------------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~--~ 148 (916)
...+.++|++-..++.+..-..+.+.-+.+-|++ +
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence 2233444444444444444444444456666665 4
Q ss_pred EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-CCEEEEEECCCc
Q 002490 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQ 227 (916)
Q Consensus 149 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~ 227 (916)
.|++...||.+.+|-.+........+. ..+.. ++ ...+.....-.+..+......|. ...++.--.+|.
T Consensus 288 ~LfclH~nG~ltirvrk~~~~~f~~~~-~~l~~-----dl----~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKEEPTEFKKPN-ASLSM-----DL----GEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD 357 (1062)
T ss_pred eEEEEecCCeEEEEEeeccCccccccc-hhhcc-----cc----ccceEEEeechhcccceeecCCCChhhhhhhhhcch
Confidence 788999999999997654322222111 00000 00 00011111111222233334444 233333344666
Q ss_pred EEEEECCCCccee-----------------------------eeeeecCCCCeEEEEEcc-----------CC-------
Q 002490 228 VKLWRMNETKAWE-----------------------------VDTLRGHMNNVSCVMFHA-----------KQ------- 260 (916)
Q Consensus 228 v~iwd~~~~~~~~-----------------------------~~~~~~~~~~v~~l~~sp-----------~~------- 260 (916)
+.+|.+.+++... +..-.+|....++...+| .+
T Consensus 358 ~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~ 437 (1062)
T KOG1912|consen 358 STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTV 437 (1062)
T ss_pred hHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceee
Confidence 6677665433210 001123555555554443 11
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeC----------CCceEEEecCCcc-------
Q 002490 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD----------SGMIVFKLERERP------- 323 (916)
Q Consensus 261 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~----------~~~~v~~~~~~~~------- 323 (916)
.+++.|+..|+|.++|+.++..-..+..|...|.++.|.....++..+.. +.+++-++..+..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~ 517 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ 517 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCC
Confidence 27889999999999999999998999999999999999887777765532 1223444443321
Q ss_pred ----------eEEecCCEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEc-CCCCE------------
Q 002490 324 ----------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS-PTENA------------ 379 (916)
Q Consensus 324 ----------~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~~~~------------ 379 (916)
..+..+.+|++. .+.-+.+||+++......++..- + -++.+.|+ |.-..
T Consensus 518 ~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~----P---~it~leWsl~~~~si~qk~ls~q~sm 590 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL----P---LITVLEWSLPKHPSIKQKELSKQSSM 590 (1062)
T ss_pred CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC----C---cEEEEeecccCCCCcccccchhhhhh
Confidence 455677788888 99999999998766555443322 1 36777777 32111
Q ss_pred ---EEEEEcCCCCEEEEEEeeCCCC----CCC-ccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceEEE---
Q 002490 380 ---VLICSDVDGGSYELYVIPKDSI----GRG-DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKK--- 448 (916)
Q Consensus 380 ---llv~~~~~~g~i~i~~~~~~~~----~~~-~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~--- 448 (916)
..+... +..+++.+..... +.. ....+...-....++|- +..++.|..+|.+.+||+..+..+.
T Consensus 591 s~n~vv~ds---~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~~d 665 (1062)
T KOG1912|consen 591 SENLVVLDS---VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGVRD 665 (1062)
T ss_pred hhceeeecc---ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCccC
Confidence 111111 1223333321111 000 00011111123335554 5599999999999999998654433
Q ss_pred eeCCCceeEEE---EeCCceEEEEECCEEEEEEcCCCeEEEEEE
Q 002490 449 SILPIAADAIF---YAGTGNLLCRAEDRVVIFDLQQRLVLGDLQ 489 (916)
Q Consensus 449 i~~~~~v~~l~---~s~~g~~l~~~d~~v~l~d~~~~~~~~~~~ 489 (916)
...| ....+. .-++++.++.....+-+||......+..+.
T Consensus 666 ~p~~-ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~sia 708 (1062)
T KOG1912|consen 666 SPDP-RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIA 708 (1062)
T ss_pred CCCc-hhhheecccCCCCceEEEEecCcceecccccceeeeeec
Confidence 2222 222222 234588888888899999988877777764
No 222
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.9e-13 Score=135.86 Aligned_cols=239 Identities=13% Similarity=0.207 Sum_probs=182.0
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC--CeEEEEECCCCe
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHR 84 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d--g~I~vWd~~~~~ 84 (916)
+....+..+.|+.+...|.+|+.+| -++|+................|.-+-|+.. ++|..+.+ ..+++.+++.+.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 4556788899999999999999988 677876655442222223334555556544 55555443 569999999888
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC---CCCceEEEEEecCCCEEEEEE--CCCeE
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG---HNHYVMCASFHPKEDLVVSAS--LDQTV 159 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~l~s~s--~dg~v 159 (916)
.+..+. ....|.+|.++.+ +|+++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.+++.-+ ..|.|
T Consensus 80 ~ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 777765 5678999999865 566666554 99999999999887753 445576777776667887533 46899
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCc-EEEEECCCCcc
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNETKA 238 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-v~iwd~~~~~~ 238 (916)
.+||..+.+.. ..+..|.+.+.+++|+|+|.+|+++++.|+ ||++.+.+++.
T Consensus 156 ~l~d~~nl~~v---------------------------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 156 VLFDTINLQPV---------------------------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred EEEEcccceee---------------------------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 99999886543 366789999999999999999999999987 68999999886
Q ss_pred eeeeeeecC--CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 002490 239 WEVDTLRGH--MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (916)
Q Consensus 239 ~~~~~~~~~--~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 281 (916)
+..++.- ...|.+++|+|++++|++.|..++|++|.+.+..
T Consensus 209 --l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 209 --LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred --eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 6666532 3468899999999999999999999999987543
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.3e-15 Score=149.66 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=158.2
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC-
Q 002490 55 RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG- 133 (916)
Q Consensus 55 ~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~- 133 (916)
.+++|+.+|..+++|+.||++|||++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++.++...+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 779999999999999999999999998888888888899999999999999999999999 899999999977776652
Q ss_pred -CCCceEEEEEecCC---C--EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCe
Q 002490 134 -HNHYVMCASFHPKE---D--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (916)
Q Consensus 134 -h~~~v~~l~~~p~~---~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (916)
.+.....+.|+.++ . .++....-+.|+.||+...+.....+ ..........|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~----------------------~~~~~~~~~si 284 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR----------------------LRKKIKRFKSI 284 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc----------------------hhhhhhccCcc
Confidence 23345677888776 2 23333445678887775433211100 00111234579
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 208 ~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
.+++.+++|++++.|+.||.|.|++..+.+.. ...-+.|...|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999999999999887752 233457999999999999999999999998888876653
No 224
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.8e-15 Score=152.78 Aligned_cols=227 Identities=20% Similarity=0.279 Sum_probs=166.4
Q ss_pred eEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE-ecCCCCEEEEEEcCC--CCEEEEEECCCcEEE
Q 002490 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL-LGHLDYIRTVQFHHE--YPWIVSASDDQTIRI 119 (916)
Q Consensus 43 ~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l-~~h~~~v~~v~fs~~--~~~l~s~s~dg~I~i 119 (916)
+.+.+.+|.+.|.|+.|+.+|.+|++|++|..+.|||.-..+.++.+ .+|...|.++.|-|. ...+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34567899999999999999999999999999999999988888776 589999999999984 458999999999999
Q ss_pred EeCCC----------CeEEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccc
Q 002490 120 WNWQS----------RTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (916)
Q Consensus 120 wd~~~----------~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (916)
+|+.+ ......+..|...|..++-.|++ +.+.+++.||+++-+|++....-..... ....+
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~-~~~~l------- 193 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED-CPSIL------- 193 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc-ccHHH-------
Confidence 99974 23445567899999999999988 7999999999999999987432211100 00000
Q ss_pred cccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcc-----e------e-----ee-eeecCC--
Q 002490 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-----W------E-----VD-TLRGHM-- 248 (916)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~-----~------~-----~~-~~~~~~-- 248 (916)
......--...++..+|..+ +|++|+.|-..++||.+.... + + +. -..+|.
T Consensus 194 ---------~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 194 ---------VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred ---------HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 00111113467889999764 789999999999999421100 0 0 11 112222
Q ss_pred ------C---CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 002490 249 ------N---NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (916)
Q Consensus 249 ------~---~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 286 (916)
. .++-+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1 1466889999987776655568999999887765544
No 225
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.62 E-value=2.4e-11 Score=124.29 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=120.3
Q ss_pred eccCCCeeEEEEcCCCCEEEEEECCC-cEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 201 EGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
-+|..+|.-..+..+++-++.|..|| .+-|+|..+++ +......-+.|.++..+|+|++++++.....|.+.|+.+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 45777788888888888899999999 89999999988 666777788999999999999999999889999999999
Q ss_pred CceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCC
Q 002490 280 RTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP 359 (916)
Q Consensus 280 ~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~ 359 (916)
++....-+...+-|+.++|||+++++|-+...|.+ ...|++||..+++...+.+...
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~----------------------tq~Iklydm~~~Kiy~vTT~ta- 489 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY----------------------TQSIKLYDMDGGKIYDVTTPTA- 489 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCccee----------------------eeeEEEEecCCCeEEEecCCcc-
Confidence 98766556667789999999999999998766653 2567788887776555433221
Q ss_pred CCCCCCcCCeEEEEcCCCCEEEEEEc
Q 002490 360 GSTSLNQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 360 ~~~~~~~~i~~l~~sp~~~~llv~~~ 385 (916)
.-.+-+|.|++++|...+.
T Consensus 490 -------~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 -------YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -------cccCcccCCCCcEEEEEec
Confidence 3345677778777665543
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4.5e-13 Score=140.35 Aligned_cols=322 Identities=14% Similarity=0.167 Sum_probs=220.4
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEe-----C-----CCcEE
Q 002490 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-----E-----DKSIR 273 (916)
Q Consensus 204 ~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~-----~-----dg~i~ 273 (916)
..+.+..+++++|++++.+. +..++|++...... +.+.... .+.++.|+|.+.+|.+-- . .-.+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~--~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV--VLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE--EEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 34477889999998887765 77899999888763 3333322 788999999999887631 1 23478
Q ss_pred EEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcc-------------eEEecC--CEEEEE---
Q 002490 274 VWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP-------------AFAVSG--DSLFYA--- 335 (916)
Q Consensus 274 vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~-------------~~s~~~--~~l~~~--- 335 (916)
+|++.++.....+......-|+..|+.|..+.|--..+.+.+|++...+. .+++.+ ..+++-
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99999866655555444444899999998877765566677776655332 233331 233332
Q ss_pred ---eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcC--C--------CCEEEEEEeeCCCCC
Q 002490 336 ---KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV--D--------GGSYELYVIPKDSIG 402 (916)
Q Consensus 336 ---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~--~--------~g~i~i~~~~~~~~~ 402 (916)
....+++|.+......+....+..-. ..--.+.|++-|..|++...+ | ..+++++.+.+...
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~- 263 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV- 263 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE-
Confidence 45678888776322222221111000 123357899988877665432 1 13555666552222
Q ss_pred CCccccccccCceeEEEEEeCCcEE--EEEcCCCEEEEEccCCceEEEeeCCCceeEEEEeCCceEEEE-----ECCEEE
Q 002490 403 RGDSVQDAKKGLGGSAIFIARNRFA--VLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR-----AEDRVV 475 (916)
Q Consensus 403 ~~~~~~~~~~~~i~~~~fs~~~~~l--~~~~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~-----~d~~v~ 475 (916)
...-...++|.++.|+++++-+ +.|-.--++.|+|+++..+..+... +-..+.|+|.|++++. -.|.+.
T Consensus 264 ---~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg-pRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 264 ---SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG-PRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred ---EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC-CccceEECCCCCEEEEeecCCCCCceE
Confidence 1233457899999999999543 4455567999999998877655443 7789999999999987 268999
Q ss_pred EEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEEe-------CCeEEEEecCCcceEEEeeeeeEEEEEEec
Q 002490 476 IFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLS-------KHAIIIASKKLVHQCTLHETIRVKSGAWDD 539 (916)
Q Consensus 476 l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~-------~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~ 539 (916)
+||+.+.+.+..+.......+.|+|||+++.+++ ++.+.||+.....+..-+.......+.|-|
T Consensus 340 vwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred EEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeee
Confidence 9999999999999988899999999999998775 568999998876655444433567788875
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=5.9e-12 Score=122.98 Aligned_cols=240 Identities=17% Similarity=0.277 Sum_probs=166.7
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEE-CC------CcEEEEeCCCC
Q 002490 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DD------QTIRIWNWQSR 125 (916)
Q Consensus 53 ~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s-~d------g~I~iwd~~~~ 125 (916)
...+++|+.|..-+++|.++| .+||+.+.-+...+...+.+.+.-+..---.++++..+ .+ ..+.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999999999888775 79999886444333322222222222222233444433 22 47999996677
Q ss_pred eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC-cceeccCCccceeeccccccccccccceEEEEEeccC
Q 002490 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL-RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (916)
Q Consensus 126 ~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (916)
+++.++. ...+|.++.+.++ .|++.- .+.|.||..... +.... .......
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~-------------------------~et~~NP 136 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHV-------------------------IETRSNP 136 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheee-------------------------eecccCC
Confidence 7777776 5688999999854 555554 678999998742 22211 1111223
Q ss_pred CCeeEEEEcCCCCEEEEEE-CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCc-EEEEECCCCce
Q 002490 205 RGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-IRVWDVTKRTG 282 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~-i~vwd~~~~~~ 282 (916)
.++.+++-+.+..+|+.-+ .-|.|+|-|+...+.-....+..|.+.|.|++++.+|.++|++|..|+ |||||..+|+.
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 3444443333334455433 468999999988774334778899999999999999999999999998 89999999999
Q ss_pred eEEeeccC--CcEEEEEEecCCCeEEEEeCCCce-EEEecCCc
Q 002490 283 VQTFRREH--DRFWILASHPEMNLLAAGHDSGMI-VFKLERER 322 (916)
Q Consensus 283 ~~~~~~~~--~~i~~l~~sp~~~~la~g~~~~~~-v~~~~~~~ 322 (916)
++++++.. ..+.+++|||+..++|+.+|.|.+ +|.+....
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99998754 469999999999999999987754 67766533
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.8e-12 Score=125.25 Aligned_cols=237 Identities=13% Similarity=0.311 Sum_probs=169.4
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccC--EEEEEEecCCCEEE-EEECC------CeEEEEEC
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVHFHKSQPLFV-SGGDD------YKIKVWNY 80 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~--V~~i~fsp~~~~l~-s~~~d------g~I~vWd~ 80 (916)
....+++|+.|..-+++|..+| .+||+.+--+...+-+.+.+. +.-+-| ..++|+ +||.+ .+|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 4566799999999999998777 899998654433322223332 222222 223444 33332 58999997
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEEeCC--CCceEEEEEecCCCEEEE-EECC
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGH--NHYVMCASFHPKEDLVVS-ASLD 156 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~h--~~~v~~l~~~p~~~~l~s-~s~d 156 (916)
...+++.++. -..+|.++.+.++ .|++.- .+.|.+|... +.+.+..+... ...+.+++-+.+..+|+. |-.-
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 7788888876 5788999999987 466655 5689999987 45555555322 223444433333335554 4456
Q ss_pred CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCc-EEEEECCC
Q 002490 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNE 235 (916)
Q Consensus 157 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-v~iwd~~~ 235 (916)
|.|++-|+...+.. .......|...|.|++.+-+|.++|+++..|+ |||||..+
T Consensus 159 GqvQi~dL~~~~~~-------------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 159 GQVQIVDLASTKPN-------------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED 213 (346)
T ss_pred ceEEEEEhhhcCcC-------------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence 89999999775432 12367889999999999999999999999997 79999999
Q ss_pred Ccceeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 236 TKAWEVDTLRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 236 ~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
+.. +..++. ....|.|++|||+..+|+++|..|+++||.+...
T Consensus 214 g~~--l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 214 GTL--LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CcE--eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 987 555553 3357999999999999999999999999988753
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.5e-13 Score=148.17 Aligned_cols=234 Identities=8% Similarity=-0.006 Sum_probs=161.6
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEE---CCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG---DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~---~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
..|.+||+.... .+.+..+...+.+.+|||+|+.|+..+ .+..|.+|++.+++... +....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 479999976443 444555778899999999999988654 24579999998875433 2223334556899999998
Q ss_pred EEEE-ECCC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECC-CeEEEE--ECCCCcceeccCCccceee
Q 002490 108 IVSA-SDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-QTVRVW--DIGALRKKTVSPADDILRL 181 (916)
Q Consensus 108 l~s~-s~dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g~v~vw--d~~~~~~~~~~~~~~~~~~ 181 (916)
|+.. +.++ .|++||+.+++... +..+...+....|+|+|+.|+..+.+ +...+| |+.++...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----------- 324 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----------- 324 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-----------
Confidence 8765 4344 58899998887644 44445567889999999988877754 444444 55543221
Q ss_pred ccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---CcEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
.+..+........|+|+|++|+..+.+ ..|.+||+.++.. ..+... .......|+|
T Consensus 325 -----------------~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---~~Lt~~-~~~~~p~~Sp 383 (429)
T PRK03629 325 -----------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLTDT-FLDETPSIAP 383 (429)
T ss_pred -----------------EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe---EEeCCC-CCCCCceECC
Confidence 112223345578899999998887643 3588899988764 223221 2234678999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 259 KQDIIVSNSEDKS---IRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 259 ~~~~l~s~~~dg~---i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
||+.|+..+.++. +.++++ ++.....+..+.+.+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 9999999988764 677777 4555666766677788888887
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.8e-13 Score=132.29 Aligned_cols=318 Identities=13% Similarity=0.173 Sum_probs=194.1
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-CCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcce
Q 002490 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 93 ~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
...++.++||+.-..++++..|-+|++||-.+ ++...++ .....|+|++|-|.+ ..|++|+..| |.+|..+..-..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34678899999766788999999999999765 5555554 235679999999965 4777777555 999987642211
Q ss_pred eccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE-CCCcEEEEECCCCcceeeeeeecCCC
Q 002490 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMN 249 (916)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~ 249 (916)
... ..+ .+........-.+| .+|+++.|.+||..+++++ .|..|.|||..++...++. ....+
T Consensus 176 ~r~------------~~~-~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glg 239 (445)
T KOG2139|consen 176 NRN------------IRM-MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLG 239 (445)
T ss_pred ccc------------ccc-ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--ccCCC
Confidence 100 000 00000111233445 7899999999999999887 4678999999999874444 23446
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcc--eEEe
Q 002490 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP--AFAV 327 (916)
Q Consensus 250 ~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~--~~s~ 327 (916)
.++-+.||||+.+|++++-|+..++|+..............+++....|+|+|+++.....+.-+++.+..... .+..
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR 319 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC
Confidence 78899999999999999999999999654433333333455699999999999998877766666666543221 1110
Q ss_pred cCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCC------CEEEEEEeeCCCC
Q 002490 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG------GSYELYVIPKDSI 401 (916)
Q Consensus 328 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~------g~i~i~~~~~~~~ 401 (916)
.++ .....-+-|+..- .+..-+. -.-+.+.+++|.|.|.++++.....+ +.+.+|+......
T Consensus 320 ~~~-----~k~~lliaDL~e~---ti~ag~~----l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 320 PQS-----IKRVLLIADLQEV---TICAGQR----LCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred ccc-----ceeeeeeccchhh---hhhcCcc----cccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 000 1111222232210 0000000 00127889999999999999887432 2233444333222
Q ss_pred CCCc--cccccccCceeEEEEE---eCCcEEEEEcCCCEEEEEccC
Q 002490 402 GRGD--SVQDAKKGLGGSAIFI---ARNRFAVLDKSSNQVLVKNLK 442 (916)
Q Consensus 402 ~~~~--~~~~~~~~~i~~~~fs---~~~~~l~~~~~d~~I~iwdl~ 442 (916)
.... ....+.. -..+.|. .++++|..+-..|.+.-|++.
T Consensus 388 vels~cg~i~ge~--P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 388 VELSYCGMIGGEY--PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eEEEecccccCCC--CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1110 0000111 1223343 345666666556767666654
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=4.2e-15 Score=151.24 Aligned_cols=228 Identities=17% Similarity=0.274 Sum_probs=189.1
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC
Q 002490 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (916)
Q Consensus 54 V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 133 (916)
-..+.++.+|+.++.|+..|.|..+|+.+++....+. -...|+.+.|-++.+++|++- ...++||| ..|..+..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhh
Confidence 3668999999999999999999999999999998887 456799999999988888765 56799999 57888888886
Q ss_pred CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc
Q 002490 134 HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (916)
Q Consensus 134 h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 213 (916)
| ..|..+.|.|.--+|++++..|.++.-|++.++.... +....+.+..++-+
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~---------------------------~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS---------------------------IRTGAGRTDVMKQN 260 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeechhhhhHH---------------------------HHccCCccchhhcC
Confidence 5 5688999999988999999999999999998776542 23345677788888
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcE
Q 002490 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (916)
Q Consensus 214 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i 293 (916)
|-...+-+|...|+|.+|..+...+ +..+..|.++|+++++.++|+++++.+.|..++|||+++...+.++.. ..+.
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 9888999999999999999998886 777888999999999999999999999999999999998887777665 3445
Q ss_pred EEEEEecCCCeEEEEeCCCceEE
Q 002490 294 WILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 294 ~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
..+++|..| +||++..+.+.+|
T Consensus 338 ~~ls~Sqkg-lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 338 SNLSLSQKG-LLALSYGDHVQIW 359 (545)
T ss_pred ccccccccc-ceeeecCCeeeee
Confidence 667777544 4555554444443
No 232
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.57 E-value=3.4e-12 Score=132.06 Aligned_cols=361 Identities=16% Similarity=0.195 Sum_probs=242.0
Q ss_pred EEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEE
Q 002490 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (916)
Q Consensus 118 ~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (916)
.+|+.++...-..+...+-++..++|||.|.+|++....| |.+|+-....+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l--------------------------- 66 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKL--------------------------- 66 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhhe---------------------------
Confidence 4566555544444544667889999999999999887665 888987654321
Q ss_pred EEEeccCCCeeEEEEcCCCCEEEEEECCC---------------cEEEEECCCCcceeeeeeecCCCC--eE-EEEEccC
Q 002490 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDR---------------QVKLWRMNETKAWEVDTLRGHMNN--VS-CVMFHAK 259 (916)
Q Consensus 198 ~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~--v~-~l~~sp~ 259 (916)
..-....|..+.|+|.+++|++-+..+ .+.+||..++.. +..+.+...+ .+ -+.|+-+
T Consensus 67 --~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i--v~sf~~~~q~~~~Wp~~k~s~~ 142 (561)
T COG5354 67 --VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI--VFSFNGISQPYLGWPVLKFSID 142 (561)
T ss_pred --eeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee--EeeccccCCcccccceeeeeec
Confidence 111235678889999999998866443 489999999987 5555554444 44 5788888
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeec-cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCC
Q 002490 260 QDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR 338 (916)
Q Consensus 260 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~ 338 (916)
..+++-.. ...+.|+++...-....+.. ....+...+++|.++.-. +..|.-+... ...
T Consensus 143 D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~------la~~tPEk~~-------------kpa 202 (561)
T COG5354 143 DKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDE------LAYWTPEKLN-------------KPA 202 (561)
T ss_pred chhhhhhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCce------EEEEccccCC-------------CCc
Confidence 88776553 34799999732222122221 135677788888753111 1222222111 567
Q ss_pred eEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCC---------CCEEEEEEeeCCCCCCCccccc
Q 002490 339 FLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD---------GGSYELYVIPKDSIGRGDSVQD 409 (916)
Q Consensus 339 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~---------~g~i~i~~~~~~~~~~~~~~~~ 409 (916)
++++|.+..+..+....+.... --.+.|++.|+++++....+ ...++|+++....... ..
T Consensus 203 ~~~i~sIp~~s~l~tk~lfk~~-------~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V----~~ 271 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLFKVS-------GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV----EK 271 (561)
T ss_pred EEEEEEccCCCeeeeeeeEeec-------ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce----ec
Confidence 7888988876666555554322 23588999999877654321 1456777776443311 11
Q ss_pred cccCceeEEEEEeCCc-EEEEE-cCCCEEEEEccCCceEEEeeCCCceeEEEEeCCceEEEE-----ECCEEEEEEcCCC
Q 002490 410 AKKGLGGSAIFIARNR-FAVLD-KSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR-----AEDRVVIFDLQQR 482 (916)
Q Consensus 410 ~~~~~i~~~~fs~~~~-~l~~~-~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~-----~d~~v~l~d~~~~ 482 (916)
...++|...+|.|.++ |.++. -.+..+.++|+.+.. .-.-++..-..+.|||.+++++. -.|.+.+||...+
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccce-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 5578899999999874 44443 457889999999873 33444446788999999999887 3579999999887
Q ss_pred eEEE-EEEcCCeeEEEEcCCCCEEEEEe-------CCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcC
Q 002490 483 LVLG-DLQTPFVKYVVWSNDMESVALLS-------KHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTL 548 (916)
Q Consensus 483 ~~~~-~~~~~~v~~v~~s~d~~~la~~~-------~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~ 548 (916)
..+. .+.+.+..++.||||++++-+.. ++.+.||+.....+. ....+.|++.+.+.-+.+
T Consensus 351 f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 351 FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------hhhhccccCCcccceeec
Confidence 7766 77788899999999999887654 458999998765544 334567888776665533
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.2e-13 Score=148.16 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=161.1
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC---CCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~---dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
..|.+||.. +...+.+..|...+.+.+|+|+|+.|+..+. +..|.+||+.+++... +....+...+..|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 469999974 5555666678888999999999999998764 3479999998876543 3334455567899999997
Q ss_pred EE-EEECCC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CCe--EEEEECCCCcceeccCCccceee
Q 002490 108 IV-SASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQT--VRVWDIGALRKKTVSPADDILRL 181 (916)
Q Consensus 108 l~-s~s~dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~~ 181 (916)
|+ +.+.++ .|++||+.+++. ..+..+.......+|+|+|+.|+.++. +|. |.++|+.+++...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~---------- 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER---------- 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----------
Confidence 75 445555 599999988775 445555555678899999998887764 444 5556665533211
Q ss_pred ccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC---cEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
+..+.......+|+|+|++|+..+.++ .|.+||+.+++. ..+. +........|+|
T Consensus 331 ------------------lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 331 ------------------LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAP 388 (433)
T ss_pred ------------------eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECC
Confidence 111223344689999999998876443 599999987764 2222 222345679999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 259 KQDIIVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 259 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
+|++|+..+.+ +.|.++++. +.....+..+.+.+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 99988877653 358888875 444555554555666677766
No 234
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.56 E-value=1e-12 Score=140.77 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=156.8
Q ss_pred EEEeeCCCceeEEEEeCCceEEEEECC--EEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeEEEEecCCcce
Q 002490 446 VKKSILPIAADAIFYAGTGNLLCRAED--RVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQ 523 (916)
Q Consensus 446 ~~~i~~~~~v~~l~~s~~g~~l~~~d~--~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~ 523 (916)
...+.+.+.|..+..+..+..|...|. .+.++|+++.+.. +-.+...++.|.|-...++..+.+++.||..-.
T Consensus 331 ~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qks--milnfcsymqwvp~sdvivaqn~dnl~iwyn~d--- 405 (1636)
T KOG3616|consen 331 EGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKS--MILNFCSYMQWVPGSDVIVAQNGDNLCIWYNID--- 405 (1636)
T ss_pred cccccccccccceeccchhhhhhcccccceeEEEEcccchHH--HHHHHhhhheeccCcceEEecCCCceEEEecCC---
Confidence 334455557888888888777766444 6788898765421 112457899999999999999999999985321
Q ss_pred EEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCCceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHH
Q 002490 524 CTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKL 603 (916)
Q Consensus 524 ~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~ 603 (916)
.+.+|+ .+. +.|+..-+ .+-.+.+-..+........+.+|...+.|..
T Consensus 406 ----~peqvt----------~~k---------ikgdv~~l---------~r~~~kteviv~e~takvayeld~~~iefga 453 (1636)
T KOG3616|consen 406 ----APEQVT----------MFK---------IKGDVEAL---------ERDADKTEVIVMEGTAKVAYELDEGLIEFGA 453 (1636)
T ss_pred ----cchhhe----------eeE---------ecccchhh---------hcCCCceeEEEeecceeEEEEecCcceeccc
Confidence 011111 111 12221100 0001111112222333445677777788888
Q ss_pred HHhcccHHHHHhhhccCcccchhHHHHHHHCCCchhhcccccCcchhhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHH
Q 002490 604 SLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEA 683 (916)
Q Consensus 604 al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~a 683 (916)
|+..++|+.|...+.+.. +- -+....|.++|++|
T Consensus 454 aid~~df~ra~afles~~--------------~~--------------------------------~da~amw~~laela 487 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLE--------------MG--------------------------------PDAEAMWIRLAELA 487 (1636)
T ss_pred ccccCchHHHHHHHHhhc--------------cC--------------------------------ccHHHHHHHHHHHH
Confidence 888888876544333321 11 12245799999999
Q ss_pred HHcCChhHHHHHHHhhcCccchhhHHhhcC--------------CHHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHH
Q 002490 684 LRQGNAGIVEYAYQRTKNFERLSFLYLITG--------------NMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVK 749 (916)
Q Consensus 684 l~~g~~~~A~~~y~~~~~~~~l~~l~~~~g--------------~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~ 749 (916)
|..||+-+|++||...++..++.||+-+.. ++-+.+.|. +....+...+..+++-.++.++|+-
T Consensus 488 le~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~l--ail~kkfk~ae~ifleqn~te~aig 565 (1636)
T KOG3616|consen 488 LEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAML--AILEKKFKEAEMIFLEQNATEEAIG 565 (1636)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHH--HHHHhhhhHHHHHHHhcccHHHHHH
Confidence 999999999999999999999999965432 333444443 3334456666778888888999999
Q ss_pred HHHHcCCchHHHHHHHhcCChH
Q 002490 750 ILESAGHLPLAYITASVHGLQD 771 (916)
Q Consensus 750 ~~~~~g~~~~A~~~a~~~g~~~ 771 (916)
||.+..+|++|+.+|+..|..+
T Consensus 566 my~~lhkwde~i~lae~~~~p~ 587 (1636)
T KOG3616|consen 566 MYQELHKWDEAIALAEAKGHPA 587 (1636)
T ss_pred HHHHHHhHHHHHHHHHhcCChH
Confidence 9999999999998888888765
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.9e-12 Score=145.54 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=162.8
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC---CCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~---dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
..|.+||. .|...+.+..|...+.+.+|+|+|+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47899997 45556667788899999999999999888763 468999999887653 45556677888999999997
Q ss_pred EE-EEECCCc--EEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CC--eEEEEECCCCcceeccCCccceee
Q 002490 108 IV-SASDDQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRL 181 (916)
Q Consensus 108 l~-s~s~dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~~~~ 181 (916)
|+ +.+.++. |.+||+.+++. ..+..+........|+|+|+.|+..+. +| .|.++|+.+....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----------- 327 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----------- 327 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-----------
Confidence 75 4555554 77789887765 446656666778999999998887764 33 5777787654322
Q ss_pred ccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---CcEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
.+..+...+....|+|+|+.|+..+.+ ..|.+||..++.. ..+. ....+....|+|
T Consensus 328 -----------------~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 328 -----------------RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILT-SGFLVEGPTWAP 386 (435)
T ss_pred -----------------EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---Eecc-CCCCCCCCeECC
Confidence 112233455678899999999887643 3588888765542 2222 223467789999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 259 KQDIIVSNSED------KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 259 ~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
+|+.|+..+.+ ..+.++|+..+.. ..+. ..+.+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 99988776543 2578888765543 3443 233455666665
No 236
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.1e-12 Score=131.12 Aligned_cols=339 Identities=13% Similarity=0.166 Sum_probs=214.7
Q ss_pred EEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE
Q 002490 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 154 (916)
...|+.........-....-.-+-+.|||-|.||+|-..-| |.+|--.+-..++.+. |. .|.-+.|||..++|++-+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEec
Confidence 45676543322211111222346789999999999988766 8899776666566554 44 478899999999999865
Q ss_pred C-----------CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE
Q 002490 155 L-----------DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (916)
Q Consensus 155 ~-----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 223 (916)
. ...++|||+.++..+...+. +.+....-.-..||.|+++++.-.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~------------------------~~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV------------------------IKSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceec------------------------cCCCccccceEEeccCCceeEEec
Confidence 2 26799999999877654321 111111223468999999998876
Q ss_pred CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEECCCCceeEEeeccCCcEEEEEE
Q 002490 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 298 (916)
. ..|.||+...-.......+ ....|....|+|.+++||.-+.. ..+.+..+.+++.+++...++-.-..+-|
T Consensus 325 ~-~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW 401 (698)
T KOG2314|consen 325 G-NSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW 401 (698)
T ss_pred c-ceEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence 5 5699998776443222222 33568889999999988865432 34777888888877776665555556777
Q ss_pred ecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccC-CceeeeEEecCCCCCCCCcCCeEEEEcCCC
Q 002490 299 HPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (916)
Q Consensus 299 sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~ 377 (916)
-.+|.+|+.-.+.... .. +-+.-..+.++.+.. .-++....++. .+...+|-|.|
T Consensus 402 Qk~gdyLcvkvdR~tK------~~----------~~g~f~n~eIfrireKdIpve~velke--------~vi~FaWEP~g 457 (698)
T KOG2314|consen 402 QKSGDYLCVKVDRHTK------SK----------VKGQFSNLEIFRIREKDIPVEVVELKE--------SVIAFAWEPHG 457 (698)
T ss_pred ccCCcEEEEEEEeecc------cc----------ccceEeeEEEEEeeccCCCceeeecch--------heeeeeeccCC
Confidence 7888888764432110 00 000112345555544 22233344443 88899999999
Q ss_pred CEEEEEEcC-CCCEEEEEEeeCCC-CCCCccccccccCceeEEEEEeCCcEEEEE---cCCCEEEEEccCCceEEEeeC-
Q 002490 378 NAVLICSDV-DGGSYELYVIPKDS-IGRGDSVQDAKKGLGGSAIFIARNRFAVLD---KSSNQVLVKNLKNEVVKKSIL- 451 (916)
Q Consensus 378 ~~llv~~~~-~~g~i~i~~~~~~~-~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~---~~d~~I~iwdl~~~~~~~i~~- 451 (916)
+.+++.++. ...++.+|.+.... ...+...+. ....+.+.|+|.|+++|.+ +..|.+..+|++....+....
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~ 535 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP 535 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc
Confidence 988887764 34578889887432 222211222 2446789999999998876 346788888887522222222
Q ss_pred -CCceeEEEEeCCceEEEE
Q 002490 452 -PIAADAIFYAGTGNLLCR 469 (916)
Q Consensus 452 -~~~v~~l~~s~~g~~l~~ 469 (916)
|...+.+.|.|.|+++++
T Consensus 536 eh~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 536 EHFAATEVEWDPTGRYVVT 554 (698)
T ss_pred cccccccceECCCCCEEEE
Confidence 226677777777777765
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.55 E-value=5.9e-09 Score=124.95 Aligned_cols=454 Identities=12% Similarity=0.124 Sum_probs=245.2
Q ss_pred cCEEEEEEecCCCEE--EEEECCC--eEEEEECCCCe---eEEEEe-----cCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 002490 52 GPVRGVHFHKSQPLF--VSGGDDY--KIKVWNYKMHR---CLFTLL-----GHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (916)
Q Consensus 52 ~~V~~i~fsp~~~~l--~s~~~dg--~I~vWd~~~~~---~~~~l~-----~h~~~v~~v~fs~~~~~l~s~s~dg~I~i 119 (916)
..+...+|.+....+ +++.... .|.+....... .+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356667776655433 3332222 34444333222 233332 24568999999999999999999999999
Q ss_pred E----eCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccC-------Cccceeeccccc-c
Q 002490 120 W----NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP-------ADDILRLSQMNT-D 187 (916)
Q Consensus 120 w----d~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------~~~~~~~~~~~~-~ 187 (916)
. +..+.. +.....-...|.+++||||+..|+..+.++++.+.+-. .......+ ....+.+..... .
T Consensus 102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccC
Confidence 9 544433 22333345789999999999999999999998876432 11111110 011222222211 1
Q ss_pred ccccccceE--------------EEEEeccCCCeeEEEEcCCCCEEEEEEC------CCcEEEEECCCCcceeeeeeecC
Q 002490 188 LFGGVDAVV--------------KYVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETKAWEVDTLRGH 247 (916)
Q Consensus 188 ~~~~~~~~~--------------~~~~~~~~~~v~~~~~~p~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~ 247 (916)
.|.+..+.. ...+. ++..-..++|-.||.++++.+- -+.+++|+-. +.. ..+...-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L--~stSE~v 255 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL--QSTSEPV 255 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE--EeccccC
Confidence 221111111 01222 4556778999999999998874 2579999876 332 2222222
Q ss_pred CCCeEEEEEccCCCEEEEEeC---CCcEEEEECCCCceeEEeec----cCCcEEEEEEecCCCeEEEEeCCCceEEEecC
Q 002490 248 MNNVSCVMFHAKQDIIVSNSE---DKSIRVWDVTKRTGVQTFRR----EHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (916)
Q Consensus 248 ~~~v~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~ 320 (916)
.+--.+++|.|.|++||+... ...|.+|. ++|-.-..|.. ....+..+.|++++.+||+...+.+.+|....
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N 334 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN 334 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC
Confidence 333457899999999998864 34577777 34544444433 34678999999999999998887888886543
Q ss_pred CcceEEecCCEEEEEeC--CeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEc----CCCC-EEEEEEcCCCCEEEE
Q 002490 321 ERPAFAVSGDSLFYAKD--RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS----PTEN-AVLICSDVDGGSYEL 393 (916)
Q Consensus 321 ~~~~~s~~~~~l~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s----p~~~-~llv~~~~~~g~i~i 393 (916)
-.--. - ..+.+... .....|+......+.+.... +.-........+..+ |+.. .++|..+ ..+.+
T Consensus 335 YHWYL--K-qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~--g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG---~~lll 406 (928)
T PF04762_consen 335 YHWYL--K-QEIRFSSSESVNFVKWDPEKPLRLHVLTSN--GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDG---NKLLL 406 (928)
T ss_pred CEEEE--E-EEEEccCCCCCCceEECCCCCCEEEEEecC--CcEEEEEEEEEEEecCCCCccCceEEEEEeC---CeEEE
Confidence 22100 0 00000101 11134444433222222210 000000001111112 2122 2333333 56666
Q ss_pred EEeeCCCCCCCc-cccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceE---------EEeeC-----------C
Q 002490 394 YVIPKDSIGRGD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV---------KKSIL-----------P 452 (916)
Q Consensus 394 ~~~~~~~~~~~~-~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~---------~~i~~-----------~ 452 (916)
-.+........- ...-.....|..++|++++..+++-..|++|.+|....+.. ..+.. .
T Consensus 407 Tpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (928)
T PF04762_consen 407 TPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPL 486 (928)
T ss_pred ecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccc
Confidence 555433221100 00112346799999999986555555599999988653211 11111 1
Q ss_pred CceeEEEEeCCceEEEE--E---CCEEEEEEcCCCe---EEEEEE-c-CCeeEEEEcCCCCEEEEE-eCCeEEEEecCC
Q 002490 453 IAADAIFYAGTGNLLCR--A---EDRVVIFDLQQRL---VLGDLQ-T-PFVKYVVWSNDMESVALL-SKHAIIIASKKL 520 (916)
Q Consensus 453 ~~v~~l~~s~~g~~l~~--~---d~~v~l~d~~~~~---~~~~~~-~-~~v~~v~~s~d~~~la~~-~~~~i~i~~~~~ 520 (916)
..+..++|..+..+++. . ...+.++++...+ .+.... . ..+..+..+++...+++. .++.++..+...
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 487 GSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred ccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 15778888888776665 2 2478888874332 222222 1 344455555555423333 367777655443
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1e-12 Score=146.86 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=159.0
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC---CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d---g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
..|.++|. +|...+.+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46778886 555556666788899999999999999887643 469999999886543 3334456678999999998
Q ss_pred EE-EEECCCcEEEEe--CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CCeEEEEECC--CCcceeccCCccceee
Q 002490 108 IV-SASDDQTIRIWN--WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQTVRVWDIG--ALRKKTVSPADDILRL 181 (916)
Q Consensus 108 l~-s~s~dg~I~iwd--~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg~v~vwd~~--~~~~~~~~~~~~~~~~ 181 (916)
|+ +.+.++...||. ..++. ...+..+........|+|||+.|+..+. ++...+|.+. +....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----------- 321 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----------- 321 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------
Confidence 76 456777766664 44444 4555556666677899999998876664 4566666653 32111
Q ss_pred ccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC---cEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
.... +.......+|+|+|++|+..+.++ .|.+||+.+++. ..+... .......|+|
T Consensus 322 ---------------~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~sp 380 (427)
T PRK02889 322 ---------------RVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAP 380 (427)
T ss_pred ---------------EEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---EEccCC-CCccCceECC
Confidence 1111 122234578999999998877654 599999988764 222222 2346789999
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 259 KQDIIVSNSEDK---SIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 259 ~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
+|+.|+..+.++ .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 999988877554 3556666 35555555555566666777763
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=145.85 Aligned_cols=220 Identities=8% Similarity=0.008 Sum_probs=153.7
Q ss_pred ccccCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEE-ECCC--eEEEE
Q 002490 5 FETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDY--KIKVW 78 (916)
Q Consensus 5 l~~h~~~V~~l~~sp~~~~la~~~~---dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~-~~dg--~I~vW 78 (916)
+..+...+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+...+|+|||+.|+.. +.+| .|.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4445668899999999999987542 3579999998875433 22233445578999999988765 3344 59999
Q ss_pred ECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC
Q 002490 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (916)
Q Consensus 79 d~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 155 (916)
|+++++... +..+...+....|+|||+.|+.++.+ + .|.++|+.+++. ..+..+.....+..|+|+|++|+..+.
T Consensus 273 d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998876544 44445567889999999988877764 3 455557766654 344444455667899999998887664
Q ss_pred C---CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCc---EE
Q 002490 156 D---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ---VK 229 (916)
Q Consensus 156 d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~---v~ 229 (916)
+ ..|.+||+.++.... +.. ........|+|||+.|+.++.++. +.
T Consensus 351 ~~g~~~I~~~dl~~g~~~~----------------------------Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV----------------------------LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred cCCCceEEEEECCCCCeEE----------------------------eCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 4 358888987754321 111 112235689999999999887764 67
Q ss_pred EEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
++++.... ...+.+|.+.+...+|+|-
T Consensus 402 ~~~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 402 LVSTDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEECCCCC---eEECccCCCCcCCcccCCC
Confidence 77775554 5556678888888999873
No 240
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.54 E-value=6.8e-12 Score=129.89 Aligned_cols=361 Identities=11% Similarity=0.081 Sum_probs=240.8
Q ss_pred EEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC
Q 002490 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (916)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 155 (916)
.+|+..+...-..+....-++..++|||.|.+|++....| |.+|.-.++..+..+. ...|..+.|+|.+++|++-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeecc
Confidence 4566555444444444667899999999999999877654 9999988777555554 356889999999999998765
Q ss_pred CC---------------eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC--ee-EEEEcCCCC
Q 002490 156 DQ---------------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG--VN-WAAFHPTLP 217 (916)
Q Consensus 156 dg---------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~p~~~ 217 (916)
.+ .+.+||+.++...... .....+ .+ -+.|+-+..
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf---------------------------~~~~q~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF---------------------------NGISQPYLGWPVLKFSIDDK 144 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeec---------------------------cccCCcccccceeeeeecch
Confidence 43 4888888876544322 222222 22 567887777
Q ss_pred EEEEEECCCcEEEEECCCCcc--eeeeeeecCCCCeEEEEEccCCC--EEEE-----EeCCCcEEEEECCCCceeEEeec
Q 002490 218 LIVSGADDRQVKLWRMNETKA--WEVDTLRGHMNNVSCVMFHAKQD--IIVS-----NSEDKSIRVWDVTKRTGVQTFRR 288 (916)
Q Consensus 218 ~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~--~l~s-----~~~dg~i~vwd~~~~~~~~~~~~ 288 (916)
+++-- ....++|+++ +... .+...++ ...|....|+|.++ .|+. .+..+.+++|.+..+..+.+...
T Consensus 145 y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l 220 (561)
T COG5354 145 YVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL 220 (561)
T ss_pred hhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee
Confidence 66544 3456899996 3332 1122222 35678888998643 3443 34677899999987777666544
Q ss_pred cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeE-EecCCCCCCCCcC
Q 002490 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI-PIRRPGSTSLNQS 367 (916)
Q Consensus 289 ~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~ 367 (916)
..-.-..+.|++.|+++.+-...... .... + -.+..++++++.. ..+++. .+ .++
T Consensus 221 fk~~~~qLkW~~~g~~ll~l~~t~~k-----snKs---------y-fgesnLyl~~~~e-~~i~V~~~~--------~~p 276 (561)
T COG5354 221 FKVSGVQLKWQVLGKYLLVLVMTHTK-----SNKS---------Y-FGESNLYLLRITE-RSIPVEKDL--------KDP 276 (561)
T ss_pred EeecccEEEEecCCceEEEEEEEeee-----cccc---------e-eccceEEEEeecc-cccceeccc--------ccc
Confidence 44444678899999887654321110 0000 0 0346677888773 333332 22 229
Q ss_pred CeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCC---CEEEEEccCCc
Q 002490 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS---NQVLVKNLKNE 444 (916)
Q Consensus 368 i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d---~~I~iwdl~~~ 444 (916)
|...+|+|.++.++++++.....+.++++..+-. .......-..+.|+|.++++++++-+ |.+.||+..++
T Consensus 277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~------~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR------FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ceeeeecccCCceeEEecccccceeecccccceE------EecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 9999999999999999987778888998866522 22333444568899999999997654 68999999985
Q ss_pred eEE--EeeCCCceeEEEEeCCceEEEE--------ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEE
Q 002490 445 VVK--KSILPIAADAIFYAGTGNLLCR--------AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVAL 507 (916)
Q Consensus 445 ~~~--~i~~~~~v~~l~~s~~g~~l~~--------~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~ 507 (916)
... .+... ..+-..|+|||.++-+ .|..+.|||+...... ....+.|.|.|+++..
T Consensus 351 f~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el~~~~W~p~~~~~tt 416 (561)
T COG5354 351 FKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------ELTNITWDPSGQYVTT 416 (561)
T ss_pred eEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------hhhhccccCCccccee
Confidence 443 34433 5566679999998876 2779999998655443 3566889888887744
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.4e-12 Score=130.14 Aligned_cols=313 Identities=12% Similarity=0.150 Sum_probs=204.4
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-----------CCcEEEEeC
Q 002490 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-----------DQTIRIWNW 122 (916)
Q Consensus 54 V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-----------dg~I~iwd~ 122 (916)
=+-+.|||.|.||+|--..| |.+|--++...++.+. |. .|.-+.|||..+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 36789999999999987664 8899877777666664 55 4899999999999998654 257999999
Q ss_pred CCCeEEEEEeCCCC---ceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEE
Q 002490 123 QSRTCISVLTGHNH---YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (916)
Q Consensus 123 ~~~~~~~~~~~h~~---~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (916)
.+|...+.+....+ .-.-..||.|+++++.... .+|.||+..+..... .
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld---------------------------~ 341 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD---------------------------K 341 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec---------------------------c
Confidence 99998887764222 1234679999999998876 468999876532111 0
Q ss_pred EeccCCCeeEEEEcCCCCEEEEEECC-----CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeC------
Q 002490 200 LEGHDRGVNWAAFHPTLPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE------ 268 (916)
Q Consensus 200 ~~~~~~~v~~~~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~------ 268 (916)
-.-.-.+|....|+|.+++|+.-+.. ..+.+..+.+.+. +.+..-+.-.=..+-|..+|.+|+.--.
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~--iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE--IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce--eeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 01123678889999998877764421 2455666665554 4433333222234667778888875421
Q ss_pred ----CCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEE
Q 002490 269 ----DKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYE 344 (916)
Q Consensus 269 ----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d 344 (916)
-..+-|+.++.....-..-.-...|...+|-|.|+.+++-+.+.. ..++++|.
T Consensus 420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~-----------------------k~tvsfY~ 476 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV-----------------------KNTVSFYA 476 (698)
T ss_pred ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc-----------------------ccceeEEE
Confidence 112455555544332222234567889999999998887553322 35677887
Q ss_pred ccCC--ceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEc-CCCCEEEEEEeeCCCCCCCccccccccCceeEEEEE
Q 002490 345 FSTQ--KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD-VDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFI 421 (916)
Q Consensus 345 ~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs 421 (916)
+++. +...+..+.. . ....+.|+|.|+.+++++- +..|.+.+|+.+....... ....|. ..+.+.|.
T Consensus 477 ~e~~~~~~~lVk~~dk----~---~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~--~~~eh~-~at~veWD 546 (698)
T KOG2314|consen 477 VETNIKKPSLVKELDK----K---FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT--ASPEHF-AATEVEWD 546 (698)
T ss_pred eecCCCchhhhhhhcc----c---ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc--cCcccc-ccccceEC
Confidence 7742 2212222222 1 6678999999999877653 2467899998864322221 112222 35678999
Q ss_pred eCCcEEEEEcC
Q 002490 422 ARNRFAVLDKS 432 (916)
Q Consensus 422 ~~~~~l~~~~~ 432 (916)
|.|||+++++.
T Consensus 547 PtGRYvvT~ss 557 (698)
T KOG2314|consen 547 PTGRYVVTSSS 557 (698)
T ss_pred CCCCEEEEeee
Confidence 99999999874
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.5e-12 Score=130.53 Aligned_cols=263 Identities=13% Similarity=0.190 Sum_probs=192.0
Q ss_pred cCCCEEEEEEeCCCC--EEEEEecCCeEEEEECCCCceEEEe------cccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 8 KSNRVKGLSFHSKRP--WILASLHSGVIQLWDYRMGTLIDRF------DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 8 h~~~V~~l~~sp~~~--~la~~~~dg~I~lwd~~~~~~~~~~------~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
...+|++++|.-+++ .+...+.+..+...++....+...+ ....++|.+++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 456788888876553 3444335666777776665544433 3456667776653 33688889999999999
Q ss_pred CCCCe----eEEEEecCCCCEEEEEEcCCCCEE-EEEECC--CcEEEEeCCCCeEEEEEeCC---------CCceEEEEE
Q 002490 80 YKMHR----CLFTLLGHLDYIRTVQFHHEYPWI-VSASDD--QTIRIWNWQSRTCISVLTGH---------NHYVMCASF 143 (916)
Q Consensus 80 ~~~~~----~~~~l~~h~~~v~~v~fs~~~~~l-~s~s~d--g~I~iwd~~~~~~~~~~~~h---------~~~v~~l~~ 143 (916)
.+.+. .+..+.. ...+..+.-++..+.| ++|+.. ..+.|||++..+.+..-+.- .-.++++.|
T Consensus 132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 88432 2233332 2556677777766655 458877 78999999988666554322 124678999
Q ss_pred ecC--CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEE
Q 002490 144 HPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS 221 (916)
Q Consensus 144 ~p~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 221 (916)
.|. ...|++++.-+.||+||.+..+... ..+.-.+.+++++...|+++.+++
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV--------------------------~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPV--------------------------AQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcce--------------------------eEeccccCcceeeeecCCCcEEEE
Confidence 887 7799999999999999998765432 234445789999999999999999
Q ss_pred EECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
|..-+.+..||.+.++. ....+.+..+.|+++..+|.+++++++|-|..+||+|+.+.+++...- -..+.+++-+.++
T Consensus 265 gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ecccchhheecccCcee-eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 99999999999999886 133478889999999999999999999999999999999876655432 2344555555443
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=6.7e-11 Score=133.06 Aligned_cols=199 Identities=22% Similarity=0.343 Sum_probs=160.1
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEeccccc----CEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG----PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~----~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
++.|..-.+.-+...++.++.+..+.+||...+.....+..... +..-+.++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 34455555566677888888999999999988877766642221 12233456777789999999999999987333
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EEeCCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd 163 (916)
.-..+.+|.+.|..+.|+.||.+++++|+|.++|+|++.+++... +.-+|...|..+.|+|+ .+++++.|.+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 333688999999999999999999999999999999999988776 67789999999999988 999999999999997
Q ss_pred CCCCcceeccCCccceeeccccccccccccceEEEEEeccC-CCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
...... ..+.+|. +.+..++.+++....++++.|+.+++|++....
T Consensus 245 ~~~~~l----------------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 245 VNGTQL----------------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ccccee----------------------------hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 655322 1444554 578999999999999999999999999987644
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-12 Score=127.76 Aligned_cols=258 Identities=17% Similarity=0.284 Sum_probs=173.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc-----eEEEecccc------------cCEEEEEEecCCC--EEEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-----LIDRFDEHD------------GPVRGVHFHKSQP--LFVSG 69 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~-----~~~~~~~h~------------~~V~~i~fsp~~~--~l~s~ 69 (916)
..-|.++.|...|.+||+|..+|.|.++.-.... ....++.|+ ..|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999743221 233444453 4589999988765 57777
Q ss_pred ECCCeEEEEECCCCeeE-----------------------------------EEE-ecCCCCEEEEEEcCCCCEEEEEEC
Q 002490 70 GDDYKIKVWNYKMHRCL-----------------------------------FTL-LGHLDYIRTVQFHHEYPWIVSASD 113 (916)
Q Consensus 70 ~~dg~I~vWd~~~~~~~-----------------------------------~~l-~~h~~~v~~v~fs~~~~~l~s~s~ 113 (916)
+.|.+|++|.+...... +.+ ..|..-|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 88999999987532110 011 25777899999999999888865
Q ss_pred CCcEEEEeCCC-CeEEE--EEeCCC-----CceEEEEEecCC-CEEEEEECCCeEEEEECCCCcceeccCCccceeeccc
Q 002490 114 DQTIRIWNWQS-RTCIS--VLTGHN-----HYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (916)
Q Consensus 114 dg~I~iwd~~~-~~~~~--~~~~h~-----~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 184 (916)
|-.|.+|+++- .++.. -++.++ .-|++..|||.. +.++-.+..|+|++-|++....--.. ...+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h--sKlfE---- 257 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH--SKLFE---- 257 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch--hhhhc----
Confidence 67899999863 22222 222232 358899999965 57788888999999999852211000 00000
Q ss_pred cccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC------------CCe-
Q 002490 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM------------NNV- 251 (916)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~v- 251 (916)
...+...+..+..--..|..+.|+++|+++++-. --+|++||++.... ++.+.+-|. ..|
T Consensus 258 -----epedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~-pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 258 -----EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAK-PVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred -----cccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCC-cceEEeehHhHHHHHHHHhhccchh
Confidence 0001111122333446788999999999998754 37899999954322 255544442 112
Q ss_pred --EEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 252 --SCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 252 --~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
..++|+.++.++++|+....+++++...|
T Consensus 331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred heeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34789989999999999999999996544
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.8e-12 Score=134.16 Aligned_cols=279 Identities=11% Similarity=0.111 Sum_probs=196.0
Q ss_pred ccCCCEEEEEEeCCCCEE-EEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCee
Q 002490 7 TKSNRVKGLSFHSKRPWI-LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~l-a~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~ 85 (916)
.|+..-+.|..+|||+|+ |+|..--.|++||+....+-..-.--...|.-.-.+.|-..++.-..|.+|-+-.-- |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 356778899999999987 566678899999987654332221123445555556665556666677777655422 222
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 86 ~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
. ++. -...-+.++++.-.--|++++....|+-+|++.|+.+..+....+.+.++..++-..+|++|+.+|.|.+||.+
T Consensus 128 y-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 128 Y-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred e-eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 2 111 12334556666544445555666789999999999999998888999999999998899999999999999998
Q ss_pred CCcceeccCCccceeeccccccccccccceEEEEEecc-----CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCccee
Q 002490 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
.......... ......| ...|+++.|+.+|-.+++|+.+|.|.|||++..++..
T Consensus 206 ~ksrv~~l~~---------------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 206 DKSRVGTLDA---------------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred hhhhheeeec---------------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 7554332211 0111222 2459999999999999999999999999999988632
Q ss_pred eeeeecCCCCeEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCC
Q 002490 241 VDTLRGHMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 241 ~~~~~~~~~~v~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
..-.+..-+|..+.|.+. ++.+++.. ...++|||-.+|+....+.... .+..+++-|++.++.++.+++
T Consensus 265 -~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 265 -VKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred -ecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCC
Confidence 222233457888999775 44555543 4579999999999888776444 488888888888887776543
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.1e-12 Score=144.94 Aligned_cols=221 Identities=12% Similarity=0.053 Sum_probs=153.2
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEE-EEECCC--eEE
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDY--KIK 76 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~---dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~-s~~~dg--~I~ 76 (916)
+.+..|...+.+.+|+|||+.|+..+. ...|.+||+.+++... +..+.+...+.+|+|+|+.++ +.+.+| .|.
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 345566778999999999999998764 3469999998876533 334455566889999999775 445454 699
Q ss_pred EEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCc--EEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEE
Q 002490 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (916)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 153 (916)
+||+.+++. ..+..+.......+|+|||++|+.++. ++. |.++|+.+++... +..+.......+|+|+|+.|+..
T Consensus 276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEE
Confidence 999988765 345556556678899999998887764 444 7777777665433 33334455678999999998877
Q ss_pred ECCC---eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---Cc
Q 002490 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQ 227 (916)
Q Consensus 154 s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~ 227 (916)
+.++ .|.+||+.+++.... . +........|+|+|+.++..+.+ +.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~~L----------------------------t-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVRTL----------------------------T-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ECCCCceeEEEEECCCCCeEEC----------------------------C-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 6443 689999876543211 1 11123456899999988877653 35
Q ss_pred EEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
|.+++..... ...+..+.+.+...+|+|
T Consensus 405 L~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 7778876544 444444556677778876
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.9e-11 Score=127.02 Aligned_cols=325 Identities=9% Similarity=0.080 Sum_probs=214.6
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEE-----EC-----CCeEEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-----GD-----DYKIKVW 78 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~-----~~-----dg~I~vW 78 (916)
+..++..++|++|+++|.+ .+..+.|++..++..+.+.... .+.++.|+|-+.+|.|- .. ...+++|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3456788999999988877 5788999999888654444333 78999999999988763 11 2457799
Q ss_pred ECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC--EEEE----
Q 002490 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED--LVVS---- 152 (916)
Q Consensus 79 d~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~--~l~s---- 152 (916)
+++++.....+......-++..|+.|..+.+- -..+.+.+|+..+-+.+. -.-|...|..+.++|.+. .+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccC
Confidence 99996655555432222268899998764332 234679999987643322 223577889999998743 4443
Q ss_pred -EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEE-------
Q 002490 153 -ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGA------- 223 (916)
Q Consensus 153 -~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~------- 223 (916)
.+.-+.|++|...-......... ... ....-..+.|++-|. +|+.++
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~----------ksF--------------Fkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVAN----------KSF--------------FKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred CCCCCcEEEEeccccccccchhhh----------ccc--------------cccceeEEEeccCCceEEEEEEEeecCCC
Confidence 34556799998763221111000 000 011122355665544 222222
Q ss_pred ----CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEE--EeCCCcEEEEECCCCceeEEeeccCCcEEEEE
Q 002490 224 ----DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS--NSEDKSIRVWDVTKRTGVQTFRREHDRFWILA 297 (916)
Q Consensus 224 ----~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 297 (916)
...++++.+..+... ...+ ...++|.++.|+|+++-+++ |-+-.++.|||++ +.++..+ ..++-..+-
T Consensus 245 ~SYYGEq~Lyll~t~g~s~--~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~ 318 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESV--SVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF 318 (566)
T ss_pred ccccccceEEEEEecCceE--EEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence 134677877774442 2222 24689999999999986655 4566789999975 5555544 456678899
Q ss_pred EecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCC
Q 002490 298 SHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (916)
Q Consensus 298 ~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~ 377 (916)
|+|.|++++.++-+.+ .|.+.+||+.+.+.+..+... .-+-..|+|||
T Consensus 319 fnp~g~ii~lAGFGNL-----------------------~G~mEvwDv~n~K~i~~~~a~---------~tt~~eW~PdG 366 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNL-----------------------PGDMEVWDVPNRKLIAKFKAA---------NTTVFEWSPDG 366 (566)
T ss_pred ECCCCCEEEEeecCCC-----------------------CCceEEEeccchhhccccccC---------CceEEEEcCCC
Confidence 9999999887664443 488999999986655443321 45668999999
Q ss_pred CEEEEEEcC----CCCEEEEEEeeCCC
Q 002490 378 NAVLICSDV----DGGSYELYVIPKDS 400 (916)
Q Consensus 378 ~~llv~~~~----~~g~i~i~~~~~~~ 400 (916)
+++++++.+ .|+.++||++.+..
T Consensus 367 e~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cEEEEEeccccEEecCCeEEEEecCce
Confidence 999998875 45789999997654
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=7.9e-13 Score=137.24 Aligned_cols=218 Identities=15% Similarity=0.184 Sum_probs=153.5
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE----EEecccccCEEEEEE-----ecCCCEEEEEECCCeEEEEECC
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI----DRFDEHDGPVRGVHF-----HKSQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~----~~~~~h~~~V~~i~f-----sp~~~~l~s~~~dg~I~vWd~~ 81 (916)
.++...++-.|.+|+.. ....+.+|+++.+..+ ....-....-+|=+| .|.+--+..|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 34555556677777665 3467999998754322 111111112234444 3455567888888999999876
Q ss_pred CCeeEEEE----ecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCC--------------C--------------eEE
Q 002490 82 MHRCLFTL----LGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQS--------------R--------------TCI 128 (916)
Q Consensus 82 ~~~~~~~l----~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~--------------~--------------~~~ 128 (916)
..+....+ .-....|+|+.|-|.+. .++.+-.+|.++++|..- + .++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 52221111 12346899999998654 666777899999997531 1 111
Q ss_pred EEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCee
Q 002490 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (916)
Q Consensus 129 ~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (916)
..+.--.+.|...+|+|||++|++.+.||.+||||..+.+... ....--++..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---------------------------~mkSYFGGLL 336 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG---------------------------VMKSYFGGLL 336 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH---------------------------HHHhhccceE
Confidence 2222233578889999999999999999999999998755432 2333457899
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 209 ~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
|++|+|||++|++|++|-.|.||.+...+. +..-.+|...|+.++|.|
T Consensus 337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRV--VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRV--VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcCCccEEEecCCcceEEEEEeccceE--EEeccccccceeeEeecc
Confidence 999999999999999999999999999987 888899999999999983
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.4e-12 Score=142.51 Aligned_cols=221 Identities=13% Similarity=0.050 Sum_probs=155.4
Q ss_pred ccccccCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEE-EEECCC--eEE
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDY--KIK 76 (916)
Q Consensus 3 ~~l~~h~~~V~~l~~sp~~~~la~~~~---dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~-s~~~dg--~I~ 76 (916)
+.+..|...+.+.+|||||++|+..+. +..|.+||+.+++. ..+..+.+.+.+.+|+|+|+.|+ +.+.++ .|.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 456677889999999999999988753 46899999988865 34556777888999999998775 445554 477
Q ss_pred EEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEE
Q 002490 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (916)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 153 (916)
+||+.+++. ..+..+........|+|||++|+..+. ++ .|+++|+.+++.. .+..+...+....|+|+|+.|+..
T Consensus 274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence 889887765 446656666778999999998887774 33 6888898766543 344345566778999999998887
Q ss_pred ECC---CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC-----
Q 002490 154 SLD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD----- 225 (916)
Q Consensus 154 s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----- 225 (916)
+.+ ..|.+||+.+..... +. ....+....|+|+|+.|+..+.+
T Consensus 352 ~~~~~~~~i~~~d~~~~~~~~----------------------------lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGERI----------------------------LT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred EcCCCceEEEEEECCCCceEe----------------------------cc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 654 357788875533211 11 12235678999999988776543
Q ss_pred -CcEEEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 226 -g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
..+.++++.+... ..+. ..+.+...+|+|-
T Consensus 403 ~~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 403 APKLYTVDLTGRNE---REVP-TPGDASDPAWSPL 433 (435)
T ss_pred cceEEEEECCCCce---EEcc-CCCCccCcccCCC
Confidence 2577888876653 3333 2344666778763
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2e-12 Score=144.48 Aligned_cols=221 Identities=11% Similarity=0.038 Sum_probs=149.3
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEE-EEECCCeEEEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWN 79 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~d---g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~-s~~~dg~I~vWd 79 (916)
.+..+...+.+.+|||||++|+..+.. ..|.+||+.+++... +....+.+.+.+|+|+|+.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 455677889999999999999887642 469999998887543 333455677899999999887 456677766665
Q ss_pred C--CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEe--CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE
Q 002490 80 Y--KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWN--WQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 80 ~--~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg~I~iwd--~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 154 (916)
+ .++. ...+..+........|+|||++|+..+. ++...||. ..+++.. .+..+........|+|+|++|+..+
T Consensus 269 ~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 269 VNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEE
Confidence 4 4443 4556556666677899999998887664 45556664 4444432 2222334445688999999998877
Q ss_pred CCC---eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC---cE
Q 002490 155 LDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QV 228 (916)
Q Consensus 155 ~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v 228 (916)
.++ .|.+||+.+++.... .. ........|+|+|+.|+.++.++ .+
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~l----------------------------t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l 397 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTAL----------------------------TD-TTRDESPSFAPNGRYILYATQQGGRSVL 397 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEc----------------------------cC-CCCccCceECCCCCEEEEEEecCCCEEE
Confidence 654 699999877543221 11 12235679999999988877544 35
Q ss_pred EEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
.+.+..... ...+..+.+.+...+|+|-
T Consensus 398 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 398 AAVSSDGRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence 555564332 4445556677777888874
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=2.4e-11 Score=136.57 Aligned_cols=237 Identities=19% Similarity=0.264 Sum_probs=176.5
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEe------ccccc----------CEEE-----------------
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF------DEHDG----------PVRG----------------- 56 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~------~~h~~----------~V~~----------------- 56 (916)
+++++..+-. ++|++| ..-.|.+||+.++..+..+ ..|.. -|++
T Consensus 8 ~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~ 84 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIE 84 (967)
T ss_pred ccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhh
Confidence 4455555443 677666 4567999998877654332 23400 0122
Q ss_pred --------EEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCC----CEEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 002490 57 --------VHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD----YIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (916)
Q Consensus 57 --------i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~----~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~ 124 (916)
..+......++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|++..
T Consensus 85 ~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 85 RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 22223445778888888999999887766665542221 222344566666999999999999999874
Q ss_pred CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC
Q 002490 125 RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (916)
Q Consensus 125 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (916)
.+.-..+.+|.+.|.++.|+-+|.++++.|.|.++|+|++.+.+... ...-+|.
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------~~~fgHs 218 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------CTGFGHS 218 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------ccccccc
Confidence 33333688999999999999999999999999999999999865432 2556899
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
..++.++|+|+ .+++++.|.+.++|+.+... +..+.+|.. .+..++.+++...+++++.||.+++|++...
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~---l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ---LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecccce---ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999998 89999999999999777665 446667754 6899999999999999999999999998643
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=3.5e-12 Score=127.93 Aligned_cols=221 Identities=14% Similarity=0.291 Sum_probs=167.3
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCc----eEEEecccccCEEEEEEecCCCEE-EEEECC--CeEEEEE
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVHFHKSQPLF-VSGGDD--YKIKVWN 79 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~----~~~~~~~h~~~V~~i~fsp~~~~l-~s~~~d--g~I~vWd 79 (916)
..+.+|..++.. ..+|++|..+|.+++|..+.+- .+..+..+ .++..+.-++..+.+ ++||.. ..+++||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 334555555543 3467888899999999987442 23333333 456667777766655 458887 7899999
Q ss_pred CCCCeeEEEEecCC---------CCEEEEEEcCC--CCEEEEEECCCcEEEEeCCC-CeEEEEEeCCCCceEEEEEecCC
Q 002490 80 YKMHRCLFTLLGHL---------DYIRTVQFHHE--YPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKE 147 (916)
Q Consensus 80 ~~~~~~~~~l~~h~---------~~v~~v~fs~~--~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~ 147 (916)
+++.+.+++-+.-. -.++.+.|-+. ...|++++.-+.+++||.+. ++++..+.-...+++++...|++
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99887766543211 24678889887 77999999999999999984 56788888788999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCc
Q 002490 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (916)
Q Consensus 148 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 227 (916)
+++++|..-+.+..||+++++.. ...+.+..+.|.++..+|+++++++++-|+.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~--------------------------g~~~kg~tGsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLL--------------------------GCGLKGITGSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred cEEEEecccchhheecccCceee--------------------------ccccCCccCCcceEEEcCCCceEEeecccee
Confidence 99999999999999999986542 2346778899999999999999999999999
Q ss_pred EEEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
|||+|..+.+. +.... -...++++.+.++
T Consensus 314 vRIhD~ktrkl--l~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 314 VRIHDIKTRKL--LHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred EEEeecccchh--hhhhh-hhccccEEEecCC
Confidence 99999999765 22221 1234566666543
No 253
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=4.8e-13 Score=138.81 Aligned_cols=137 Identities=17% Similarity=0.390 Sum_probs=115.7
Q ss_pred CCCEEEEEEeCCC-CEEEEEecCCeEEEEECCC--------------Cc--------------eEEEecccccCEEEEEE
Q 002490 9 SNRVKGLSFHSKR-PWILASLHSGVIQLWDYRM--------------GT--------------LIDRFDEHDGPVRGVHF 59 (916)
Q Consensus 9 ~~~V~~l~~sp~~-~~la~~~~dg~I~lwd~~~--------------~~--------------~~~~~~~h~~~V~~i~f 59 (916)
..+|+|+.|-|.+ ..++++-.+|.+.+||..- +. .+..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3789999999954 4556666799999997521 11 11112223457899999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceE
Q 002490 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM 139 (916)
Q Consensus 60 sp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~ 139 (916)
+|||++||+.+.||.++|+|+.+.+.+..++..-+...|++|||||++|++|+.|-.|.||.+..++.+..-.+|.+.|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999888888888888999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 002490 140 CASFHP 145 (916)
Q Consensus 140 ~l~~~p 145 (916)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999983
No 254
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.4e-13 Score=136.96 Aligned_cols=310 Identities=18% Similarity=0.180 Sum_probs=212.2
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-eCCCCceEEEEEecCC--CEEEEEECCCeEEEE
Q 002490 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKE--DLVVSASLDQTVRVW 162 (916)
Q Consensus 86 ~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~--~~l~s~s~dg~v~vw 162 (916)
...|.+|.+.|..|.|+..|..++++|+|..|.+|||.+++....+ .+|...|....|-|.. ..+++++.||.|++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4567789999999999999999999999999999999988877666 5899999999998854 589999999999997
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceee
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEV 241 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 241 (916)
.+....... -...+..|.++|..++.-|+.+ .|.+++.|+.+.-+|++...+...
T Consensus 215 ~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 215 EILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred eecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 765422211 1124567899999999999765 588899999999999988776544
Q ss_pred eeeecCCC----CeEEEEEccCCC-EEEEEeCCCcEEEEECCCCce------eEEee------ccCCcEEEEEEecCC-C
Q 002490 242 DTLRGHMN----NVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTG------VQTFR------REHDRFWILASHPEM-N 303 (916)
Q Consensus 242 ~~~~~~~~----~v~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~------~~~~~------~~~~~i~~l~~sp~~-~ 303 (916)
..++.+.. ....++.+|... .+++++.|-.+++||.+.-.. +..+- ...-.|++++++.++ .
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 44544433 367788888665 899999999999999764321 12221 122457888888544 4
Q ss_pred eEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEE-cCCCCEEEE
Q 002490 304 LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSY-SPTENAVLI 382 (916)
Q Consensus 304 ~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-sp~~~~llv 382 (916)
++++-.+..+++|.-..... ...... .++ ....+. . ..||.. ...|..+-| -|...+ |
T Consensus 351 lLaSYnDe~IYLF~~~~~~G------~~p~~~---s~~------~~~~k~-v--YKGHrN-~~TVKgVNFfGPrsEy--V 409 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDG------SEPDPS---SPR------EQYVKR-V--YKGHRN-SRTVKGVNFFGPRSEY--V 409 (559)
T ss_pred eeeeecccceEEeccccccC------CCCCCC---cch------hhccch-h--hccccc-ccccceeeeccCccce--E
Confidence 55555565555553221110 000000 000 000000 0 123322 226777765 466664 3
Q ss_pred EEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC
Q 002490 383 CSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (916)
Q Consensus 383 ~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~ 443 (916)
.+++|-|.|.||+-..... .....+-...|.|+.=.|---.||+++-|..|+||.-.+
T Consensus 410 vSGSDCGhIFiW~K~t~ei---i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTGEI---IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred EecCccceEEEEecchhHH---HHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 4556889999998754433 223445555788888888888999999999999998753
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.6e-10 Score=127.25 Aligned_cols=420 Identities=13% Similarity=0.100 Sum_probs=229.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc-EEEEEEecCCCeEEE-EeCCCceEEEecCCcceEEecCCEE
Q 002490 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAA-GHDSGMIVFKLERERPAFAVSGDSL 332 (916)
Q Consensus 255 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~la~-g~~~~~~v~~~~~~~~~~s~~~~~l 332 (916)
+|++.+..++.|+.+|.|.+.+- +-+.++.++.+... +..+-...+.+++++ |-+.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~------------------- 89 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG------------------- 89 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC-------------------
Confidence 46788899999999999988873 34444666666655 333333333345543 333221
Q ss_pred EEEeCCeEEEEEccCC---c---ee---eeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCC
Q 002490 333 FYAKDRFLRYYEFSTQ---K---DT---QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (916)
Q Consensus 333 ~~~~d~~i~~~d~~~~---~---~~---~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~ 403 (916)
....+++|+++.. . +. .+.+.+.+..+. ++.+++.+.+-+.+++. -.+|.|..+.-+-.....
T Consensus 90 ---np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~---p~s~l~Vs~~l~~Iv~G--f~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 90 ---NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPS---PASSLAVSEDLKTIVCG--FTNGLVICYKGDILRDRG 161 (933)
T ss_pred ---CceEEEEecccccCCCCCcceeeeeeeeccCCCCCCC---cceEEEEEccccEEEEE--ecCcEEEEEcCcchhccc
Confidence 0014778877652 1 11 122222222222 88889999986654433 366888887633211111
Q ss_pred Cc-cccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCce--EEEeeCCC-ceeEEEEeCC-ceEEEEECCEEEEEE
Q 002490 404 GD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEV--VKKSILPI-AADAIFYAGT-GNLLCRAEDRVVIFD 478 (916)
Q Consensus 404 ~~-~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~--~~~i~~~~-~v~~l~~s~~-g~~l~~~d~~v~l~d 478 (916)
.+ ........+|+.++|-.+++-++.......|.+|.+.|+. .+.+..++ +..+-.+++. +.++++.+..+.+|+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 11 1223345679999999998763333336889999999765 44466665 7788888877 558888999999999
Q ss_pred cCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEE--EEcCCceeEEcc
Q 002490 479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFI--YTTLNHIKYCLP 556 (916)
Q Consensus 479 ~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l--~~t~~~~~~~l~ 556 (916)
......-..+..+.-+.+.|..-|.+|++..+...- ..+.. .+.....+ |...|+ |.+.
T Consensus 242 sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~--------~~s~s---------~ss~~~i~~~~d~~n~--~v~y 302 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTE--------NTSLS---------NSSSNRIFKAYDLRNR--YVLY 302 (933)
T ss_pred CCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCC--------CcccC---------ccchhheeehhhhcCc--ccch
Confidence 987776666664455556665555555544422110 00000 00001110 111111 1100
Q ss_pred CCceEEEEEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCC
Q 002490 557 NGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGF 636 (916)
Q Consensus 557 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 636 (916)
. ..++.....+-.-+...+++.+++.+..+ ..++.+..+.+
T Consensus 303 s------~vl~~l~d~l~~w~~~~~vltsdg~~~~L-------------~ek~le~kL~i-------------------- 343 (933)
T KOG2114|consen 303 S------SVLEDLSDNLIEWSFDCLVLTSDGVVHEL-------------IEKDLETKLDI-------------------- 343 (933)
T ss_pred H------HhHHHHHHHHHhcCCcEEEEecCCceeee-------------eeccHHHHHHH--------------------
Confidence 0 00000000000111245566666655442 22222222222
Q ss_pred chhhcccccCcchhhhhhhhcCCHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhh
Q 002490 637 PEVALHFVKDERTRFNLALESGNIQIAVASAKEIDE-----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLI 711 (916)
Q Consensus 637 ~e~al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~-----~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~ 711 (916)
..+...++.|+.+||.... .++.+..|.+.-.+|+++.|..-|.++=.+-.-+++...
T Consensus 344 -----------------L~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k 406 (933)
T KOG2114|consen 344 -----------------LFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK 406 (933)
T ss_pred -----------------HHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH
Confidence 2222235666666665443 346777788888888888888888876666555555444
Q ss_pred cCCHHHHHHHHHHHHHc-------CC-chhHHHH------------HHhcC-------CHHHHHHHHHHcCCchHHHHHH
Q 002490 712 TGNMDKLSKMLKIAEVK-------ND-VMGQFHN------------ALYLG-------DVKERVKILESAGHLPLAYITA 764 (916)
Q Consensus 712 ~g~~~~l~k~~~~~~~~-------~~-~~~~~~~------------~~~~g-------~~~ea~~~~~~~g~~~~A~~~a 764 (916)
-=+.++++.+..-.+.- .+ ......+ ++..+ |++.|.+++.+++.+++|+.+|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 44444444333221110 00 0111111 22223 4899999999999999999999
Q ss_pred HhcCChHHHHHHH
Q 002490 765 SVHGLQDVAERLA 777 (916)
Q Consensus 765 ~~~g~~~~a~~l~ 777 (916)
+.++..+.+..++
T Consensus 487 ~k~~~he~vl~il 499 (933)
T KOG2114|consen 487 TKFKKHEWVLDIL 499 (933)
T ss_pred HHhccCHHHHHHH
Confidence 9999966666654
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.46 E-value=1.2e-09 Score=112.04 Aligned_cols=216 Identities=13% Similarity=0.124 Sum_probs=152.2
Q ss_pred eEEecCCEEEEEeCCeEEEEEccCCceeeeEEec-----CCCCCCCCcCCeEEE-EcC-CCCEEEEEEcCCCCEEEEEEe
Q 002490 324 AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR-----RPGSTSLNQSPRTLS-YSP-TENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 324 ~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~-~sp-~~~~llv~~~~~~g~i~i~~~ 396 (916)
....+|.++++...+.|.+||..+.+... +.+. ......+..+..-+. |++ +|.++++.+. |...|.+.
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR---GkaFi~~~ 348 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR---GKAFIMRP 348 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec---CcEEEECC
Confidence 34567778888888999999988754322 2211 111101011111122 332 5778888887 78877766
Q ss_pred eCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCC-EEEEEccCCceEEEeeCCC-ceeEEEEeCCceEEEEECC--
Q 002490 397 PKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSN-QVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRAED-- 472 (916)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~-~I~iwdl~~~~~~~i~~~~-~v~~l~~s~~g~~l~~~d~-- 472 (916)
..... ..-++.+.|.-..+..++.-++.+..|| .+-|+|..+...+++..+- .|.++..+++|+.++..+.
T Consensus 349 ~~~~~-----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 349 WDGYS-----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred CCCee-----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence 54443 2335666688888888888888888888 9999999998888877665 8999999999998877544
Q ss_pred EEEEEEcCCCeEEEE--EEcCCeeEEEEcCCCCEEEEEe-----CCeEEEEecCCcceEEEee-eeeEEEEEEecCCeEE
Q 002490 473 RVVIFDLQQRLVLGD--LQTPFVKYVVWSNDMESVALLS-----KHAIIIASKKLVHQCTLHE-TIRVKSGAWDDNGVFI 544 (916)
Q Consensus 473 ~v~l~d~~~~~~~~~--~~~~~v~~v~~s~d~~~la~~~-----~~~i~i~~~~~~~~~~~~~-~~~i~s~~w~~~~~~l 544 (916)
.+-++|+.++...-. -...-|....|+|+++++|.+- ...|.++|...+.+..+.. +..=-+.+|++++.++
T Consensus 424 el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 424 ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 566668888875332 2236789999999999999886 3479999999988776654 4445677999999999
Q ss_pred EEcC
Q 002490 545 YTTL 548 (916)
Q Consensus 545 ~~t~ 548 (916)
|.-+
T Consensus 504 YfLs 507 (668)
T COG4946 504 YFLS 507 (668)
T ss_pred EEEe
Confidence 9743
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=7.8e-12 Score=122.42 Aligned_cols=150 Identities=15% Similarity=0.331 Sum_probs=114.7
Q ss_pred EEEEEeCCCCEEEEEec----------CCeEEEEECC-CCceEEEecc-cccCEEEEEEecCCCEEEEE--ECCCeEEEE
Q 002490 13 KGLSFHSKRPWILASLH----------SGVIQLWDYR-MGTLIDRFDE-HDGPVRGVHFHKSQPLFVSG--GDDYKIKVW 78 (916)
Q Consensus 13 ~~l~~sp~~~~la~~~~----------dg~I~lwd~~-~~~~~~~~~~-h~~~V~~i~fsp~~~~l~s~--~~dg~I~vW 78 (916)
..+.|+|+|.+|++-.. -|...||.++ .+..+..+.- ..++|.+++|+|+|..|++. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999998876543 1345566552 2334444432 45689999999999987654 356799999
Q ss_pred ECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC
Q 002490 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (916)
Q Consensus 79 d~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 155 (916)
|++ ++.+.++. ...+..+.|+|+|+++++++.+ |.|.+||.++.+.+.... | ..++.++|+|+|+++++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 66667664 5677899999999999998754 679999999988887765 3 34789999999999998874
Q ss_pred ------CCeEEEEECCCC
Q 002490 156 ------DQTVRVWDIGAL 167 (916)
Q Consensus 156 ------dg~v~vwd~~~~ 167 (916)
|..++||+..+.
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 678999998763
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=5.2e-10 Score=121.39 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=175.0
Q ss_pred EEEEECC----CcEEEEEC--CCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeC----CCcEEEEECCCC----ceeE
Q 002490 219 IVSGADD----RQVKLWRM--NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE----DKSIRVWDVTKR----TGVQ 284 (916)
Q Consensus 219 l~~~~~d----g~v~iwd~--~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~----dg~i~vwd~~~~----~~~~ 284 (916)
+++|+.. +.|..|++ .+++...+... ......+.++++|++++|.+..+ ++.|..|++... +.+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3455544 68888888 44443223332 23456678999999999999987 468888887764 2333
Q ss_pred EeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccC-CceeeeEEec------
Q 002490 285 TFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-QKDTQVIPIR------ 357 (916)
Q Consensus 285 ~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~-~~~~~~~~~~------ 357 (916)
...........++++|++++++++.- .++.+.++++.. +.........
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany-------------------------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g 135 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANY-------------------------GGGSVSVFPLDDDGSLGEVVQTVRHEGSG 135 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEET-------------------------TTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEc-------------------------cCCeEEEEEccCCcccceeeeecccCCCC
Confidence 44434556678999999998887752 234455555544 2221111100
Q ss_pred -CCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC--CCCccccc-cccCceeEEEEEeCCcEEEE-EcC
Q 002490 358 -RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI--GRGDSVQD-AKKGLGGSAIFIARNRFAVL-DKS 432 (916)
Q Consensus 358 -~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~--~~~~~~~~-~~~~~i~~~~fs~~~~~l~~-~~~ 432 (916)
.... .-...+.++.++|++++++++.-.. ..|.+|++..... .... ... .....-+.++|+|+++++.+ ...
T Consensus 136 ~~~~r-q~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 136 PNPDR-QEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp SSTTT-TSSTCEEEEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETT
T ss_pred Ccccc-cccccceeEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCC
Confidence 0000 0012678899999999998877644 4899999976541 1101 111 22233568999999987744 455
Q ss_pred CCEEEEEccC--Cc---eEEEeeCC-------CceeEEEEeCCceEEEE---ECCEEEEEEcC--CCe--EEEEEE--cC
Q 002490 433 SNQVLVKNLK--NE---VVKKSILP-------IAADAIFYAGTGNLLCR---AEDRVVIFDLQ--QRL--VLGDLQ--TP 491 (916)
Q Consensus 433 d~~I~iwdl~--~~---~~~~i~~~-------~~v~~l~~s~~g~~l~~---~d~~v~l~d~~--~~~--~~~~~~--~~ 491 (916)
+++|.++++. +. .+..+..- .....|.++|||++|.. ..+.|.+|++. +++ .+..+. +.
T Consensus 213 s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~ 292 (345)
T PF10282_consen 213 SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK 292 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC
Confidence 7899999988 32 22222221 15778999999998876 46799999993 333 334444 35
Q ss_pred CeeEEEEcCCCCEEEEEe--CCeEEEEec--CCcceEEEeee
Q 002490 492 FVKYVVWSNDMESVALLS--KHAIIIASK--KLVHQCTLHET 529 (916)
Q Consensus 492 ~v~~v~~s~d~~~la~~~--~~~i~i~~~--~~~~~~~~~~~ 529 (916)
..+.+.++|||++|+++. .+.|.+|++ +++.+......
T Consensus 293 ~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~ 334 (345)
T PF10282_consen 293 FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS 334 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc
Confidence 589999999999999988 568888865 56666655543
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=1.7e-09 Score=117.30 Aligned_cols=265 Identities=14% Similarity=0.184 Sum_probs=172.4
Q ss_pred cCCCeeEEEEcCCCCEEEEEEC----CCcEEEEECCCC--cceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 002490 203 HDRGVNWAAFHPTLPLIVSGAD----DRQVKLWRMNET--KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVW 275 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~vw 275 (916)
......+++++|++++|.+... ++.|..|++... +...+............++++|++++|+++. .+|+|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3456678999999999999877 468999988764 4434455544455677899999999998886 58899999
Q ss_pred ECCC-CceeEE---ee----------ccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEE
Q 002490 276 DVTK-RTGVQT---FR----------REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR 341 (916)
Q Consensus 276 d~~~-~~~~~~---~~----------~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~ 341 (916)
++.. +..... +. .......++.++|+++++.+..- ....|.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-------------------------G~D~v~ 169 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-------------------------GADRVY 169 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-------------------------TTTEEE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-------------------------CCCEEE
Confidence 9987 333222 11 12345678889999888776542 225577
Q ss_pred EEEccCCc--eeeeEEecC-CCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC--CCCc--ccc-ccc--
Q 002490 342 YYEFSTQK--DTQVIPIRR-PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI--GRGD--SVQ-DAK-- 411 (916)
Q Consensus 342 ~~d~~~~~--~~~~~~~~~-~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~--~~~~--~~~-~~~-- 411 (916)
+|++.... ......+.- .+. .++.+.|+|+++++.+... .++.|.+|++..... .... ... ...
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~-----GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGS-----GPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTS-----SEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred EEEEeCCCceEEEeeccccccCC-----CCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 77776643 322222221 222 8899999999999888776 667999999983221 0000 001 111
Q ss_pred cCceeEEEEEeCCcEEEEE-cCCCEEEEEccC--Cc---eEEEeeCCC-ceeEEEEeCCceEEEE---ECCEEEEEEc--
Q 002490 412 KGLGGSAIFIARNRFAVLD-KSSNQVLVKNLK--NE---VVKKSILPI-AADAIFYAGTGNLLCR---AEDRVVIFDL-- 479 (916)
Q Consensus 412 ~~~i~~~~fs~~~~~l~~~-~~d~~I~iwdl~--~~---~~~~i~~~~-~v~~l~~s~~g~~l~~---~d~~v~l~d~-- 479 (916)
......++++|||++|.++ ...++|.+++++ ++ .+..+.... ....+.++|+|++|++ .++.|.+|++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 1247789999999987665 457899999994 22 233344333 5899999999999887 4679999976
Q ss_pred CCCeEEEEE---EcCCeeEEEE
Q 002490 480 QQRLVLGDL---QTPFVKYVVW 498 (916)
Q Consensus 480 ~~~~~~~~~---~~~~v~~v~~ 498 (916)
.+|.+...- ..+...+|.|
T Consensus 324 ~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEecccccCCCCEEEeC
Confidence 566654443 3456666665
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.2e-11 Score=126.44 Aligned_cols=281 Identities=14% Similarity=0.153 Sum_probs=194.1
Q ss_pred ccccCEEEEEEecCCCEE-EEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE
Q 002490 49 EHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l-~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~ 127 (916)
+|...-+.|..+|||+|+ +||...-.|++||+.+-...+.-.-....|.-.-.+.|...++.-..|.+|-+..- .|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 467778899999999985 56667889999999876655544434456777777777777777777888877653 3322
Q ss_pred EEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCe
Q 002490 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (916)
Q Consensus 128 ~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (916)
...- -...-..++++.-..-|++++....|.-+++..++... .+....+++
T Consensus 128 y~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~---------------------------P~~~~~~~l 178 (703)
T KOG2321|consen 128 YRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN---------------------------PFETDSGEL 178 (703)
T ss_pred eeee--cCcCCccccccCCCccEEEeecCcceEEEEcccccccc---------------------------ccccccccc
Confidence 1111 11223445565433444555556678888888766433 333345889
Q ss_pred eEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeee------cCCC-----CeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002490 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR------GHMN-----NVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (916)
Q Consensus 208 ~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~~-----~v~~l~~sp~~~~l~s~~~dg~i~vwd 276 (916)
+++..++-..+|++|+.+|.|.+||.+.... +.++. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 9999999999999999999999999988764 33322 2333 399999999999999999999999999
Q ss_pred CCCCceeEEeec-cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 277 VTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 277 ~~~~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
++..+++..-.. ..-+|..+.|.+.+. ++.+++.....+++||-.+|+....+.
T Consensus 257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~-------------------------q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 257 LRASKPLLVKDHGYELPIKKLDWQDTDQ-------------------------QNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred cccCCceeecccCCccceeeecccccCC-------------------------CceEEecchHHhhhcccccCCceeecc
Confidence 999888765432 223567777765411 122333355778999999988766554
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEe
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~ 396 (916)
... .+..+++-|++.+++++. +++.+..|-+
T Consensus 312 pt~--------~lND~C~~p~sGm~f~An--e~~~m~~yyi 342 (703)
T KOG2321|consen 312 PTS--------DLNDFCFVPGSGMFFTAN--ESSKMHTYYI 342 (703)
T ss_pred ccC--------CcCceeeecCCceEEEec--CCCcceeEEc
Confidence 322 788899999988777655 4445555544
No 261
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.1e-11 Score=119.45 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=117.0
Q ss_pred CeEEEEcCCCCEEEEEEcCC--------CCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEE--cCCCEEE
Q 002490 368 PRTLSYSPTENAVLICSDVD--------GGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLD--KSSNQVL 437 (916)
Q Consensus 368 i~~l~~sp~~~~llv~~~~~--------~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~--~~d~~I~ 437 (916)
-..+.|+|+|.+|++....+ -+...||.+......... ......++|.+++|+|+|+.+++. ..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~-i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES-IELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce-eeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 34688999999988776521 245778887554332221 122334569999999998765443 3467999
Q ss_pred EEccCCceEEEeeCCCceeEEEEeCCceEEEEE-----CCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEEe---
Q 002490 438 VKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA-----EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLS--- 509 (916)
Q Consensus 438 iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~~-----d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~--- 509 (916)
+||++...+..+.. ..+..+.|||+|++|++. .|.|.+||+.+.+.+.+.....+..+.|||||+++++..
T Consensus 87 lyd~~~~~i~~~~~-~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 87 LYDVKGKKIFSFGT-QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred EEcCcccEeEeecC-CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 99999877777754 378899999999999872 468999999999999999888899999999999999875
Q ss_pred ----CCeEEEEecCCcceE
Q 002490 510 ----KHAIIIASKKLVHQC 524 (916)
Q Consensus 510 ----~~~i~i~~~~~~~~~ 524 (916)
++.+.||+.....+.
T Consensus 166 r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred ceeccccEEEEEecCeEeE
Confidence 457788887655444
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.40 E-value=8.5e-12 Score=136.21 Aligned_cols=350 Identities=12% Similarity=0.152 Sum_probs=187.1
Q ss_pred CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeE
Q 002490 291 DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRT 370 (916)
Q Consensus 291 ~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (916)
-.+..+.++|++++++++.++.. .+|.....+.... +.-..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY---------------------------~iyt~~~~r~k~~------------G~g~~ 73 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEY---------------------------EIYTALAWRNKAF------------GSGLS 73 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEE---------------------------EEEETTTTEEEEE------------EE-SE
T ss_pred cCCeeEEECCCCCEEEEEcCCEE---------------------------EEEEccCCccccc------------CceeE
Confidence 34678899999999988665433 3444222111111 14456
Q ss_pred EEEcCCCCEEEEEEcCCCCEEEEEE-eeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC-CceEEE
Q 002490 371 LSYSPTENAVLICSDVDGGSYELYV-IPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKK 448 (916)
Q Consensus 371 l~~sp~~~~llv~~~~~~g~i~i~~-~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~ 448 (916)
..|.+.++ +++... ++.+.|+. +......... . ...+..+.. |.+|...+ ++.|.+||++ ++.+++
T Consensus 74 ~vw~~~n~-yAv~~~--~~~I~I~kn~~~~~~k~i~--~---~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~ 141 (443)
T PF04053_consen 74 FVWSSRNR-YAVLES--SSTIKIYKNFKNEVVKSIK--L---PFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRR 141 (443)
T ss_dssp EEE-TSSE-EEEE-T--TS-EEEEETTEE-TT----------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEE
T ss_pred EEEecCcc-EEEEEC--CCeEEEEEcCccccceEEc--C---CcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeE
Confidence 88988655 444442 46888863 3222211111 1 112232222 77777777 5689999999 578888
Q ss_pred eeCCCceeEEEEeCCceEEEE-ECCEEEEEEcCCC--------------eEEEEEEcCCeeEEEEcCCCCEEEEEeCCeE
Q 002490 449 SILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQR--------------LVLGDLQTPFVKYVVWSNDMESVALLSKHAI 513 (916)
Q Consensus 449 i~~~~~v~~l~~s~~g~~l~~-~d~~v~l~d~~~~--------------~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i 513 (916)
+..+ +|..+.|+++|.+++. ++..+++++.... ..+.++ ...|++..|..| .+...+.+.+
T Consensus 142 i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~~l 217 (443)
T PF04053_consen 142 IDVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSNHL 217 (443)
T ss_dssp ESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TTEE
T ss_pred EecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCCeE
Confidence 8877 5899999999998887 7788888775544 344443 457999999877 5555554454
Q ss_pred EE-EecCCcceEEEeeeeeEEEEEEecCCeEEEEcC--CceeEE-----------ccCCceEEEEEecceEEEEEE----
Q 002490 514 II-ASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTL--NHIKYC-----------LPNGDSGIIRTLDVPIYITKV---- 575 (916)
Q Consensus 514 ~i-~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~--~~~~~~-----------l~~~~~~~i~~~~~~~~~~~~---- 575 (916)
.. .+.+.+.+..+..+..+-...- ..+.+++... +...|. +.+++...+ +.++..
T Consensus 218 kYl~~Ge~~~i~~ld~~~yllgy~~-~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v------~~~i~~~~ll 290 (443)
T PF04053_consen 218 KYLVNGETGIIAHLDKPLYLLGYLP-KENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEV------LRMIAASNLL 290 (443)
T ss_dssp EEEETTEEEEEEE-SS--EEEEEET-TTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----------HHHHTG
T ss_pred EEEEcCCcceEEEcCCceEEEEEEc-cCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhh------hhhhhhhhhc
Confidence 43 3344555555544333322211 1122222211 111111 122211100 000000
Q ss_pred -------eCCEEEEEeCCCCeEE-EEe-ChhHHHHHHHHhcccHHHHHhhhccCcccchhHHHHHHHCCCchhhcccccC
Q 002490 576 -------SGNTIFCLDRDGKNRA-IVI-DATEYIFKLSLLRKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKD 646 (916)
Q Consensus 576 -------~~~~~~~~~~~~~~~~-~~i-~~~~~~f~~al~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~~ 646 (916)
....+-++.+.|.... +.+ ...+.+|.+||..|+++.|+++.+..+. ...+.-
T Consensus 291 ~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~--~~~W~~---------------- 352 (443)
T PF04053_consen 291 PNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDD--PEKWKQ---------------- 352 (443)
T ss_dssp GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCST--HHHHHH----------------
T ss_pred ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCc--HHHHHH----------------
Confidence 0000111112221111 112 3456888999999999999988887653 222222
Q ss_pred cchhhhhhhhcCCHHHHHHHHHHcC-------------CHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcC
Q 002490 647 ERTRFNLALESGNIQIAVASAKEID-------------EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITG 713 (916)
Q Consensus 647 ~~~~f~lal~~g~~~~A~~~a~~~~-------------~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g 713 (916)
-.++|+..||++.|.++.++.+ +.+..++||..|..+|++.+|..|+.-+||++.+..|+..+|
T Consensus 353 ---Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 353 ---LGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ---HHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ---HHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1267888899998888887654 577889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 002490 714 NMDKLSKMLK 723 (916)
Q Consensus 714 ~~~~l~k~~~ 723 (916)
....+.-+++
T Consensus 430 ~~~~A~~~A~ 439 (443)
T PF04053_consen 430 RLPEAALFAR 439 (443)
T ss_dssp -HHHHHHHHH
T ss_pred CchHHHHHHH
Confidence 9888766643
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.4e-09 Score=109.28 Aligned_cols=278 Identities=10% Similarity=0.113 Sum_probs=175.5
Q ss_pred CCcEEEEECCCCcc-eeeeeeecCCCCeEEEEEccCCCEEEEEeCC---CcEEEEECCC--Cce--eEEeeccCCcEEEE
Q 002490 225 DRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQDIIVSNSED---KSIRVWDVTK--RTG--VQTFRREHDRFWIL 296 (916)
Q Consensus 225 dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d---g~i~vwd~~~--~~~--~~~~~~~~~~i~~l 296 (916)
+..|++|++.+..- .....+....++++-++|+|++++|.++..+ |.|..|.+.. |+. +........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999874321 1133344567788999999999999988654 6677776664 432 22223334445788
Q ss_pred EEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccC-CceeeeEEec-CCCCCCC----CcCCeE
Q 002490 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-QKDTQVIPIR-RPGSTSL----NQSPRT 370 (916)
Q Consensus 297 ~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~-~~~~~~~~~~-~~~~~~~----~~~i~~ 370 (916)
++++++++++++.- ..+.|.++-+.. |........- ..+...+ ...+..
T Consensus 95 svd~~g~~vf~AnY-------------------------~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 95 SVDEDGRFVFVANY-------------------------HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred EECCCCCEEEEEEc-------------------------cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 99999988887652 123344444433 2221111111 0110000 114678
Q ss_pred EEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcC-CCEEEEEccCC--ceEE
Q 002490 371 LSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKS-SNQVLVKNLKN--EVVK 447 (916)
Q Consensus 371 l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~-d~~I~iwdl~~--~~~~ 447 (916)
..+.|++++++++.-..| ++.+|++............-.....-+.++|+|+++++.+..+ +++|.+|..++ ....
T Consensus 150 a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 899999999988876555 8999999855443222111122233567999999998866653 78999999985 4444
Q ss_pred EeeC----------CCceeEEEEeCCceEEEE---ECCEEEEEEcCCC-eEEEEEE-----cCCeeEEEEcCCCCEEEEE
Q 002490 448 KSIL----------PIAADAIFYAGTGNLLCR---AEDRVVIFDLQQR-LVLGDLQ-----TPFVKYVVWSNDMESVALL 508 (916)
Q Consensus 448 ~i~~----------~~~v~~l~~s~~g~~l~~---~d~~v~l~d~~~~-~~~~~~~-----~~~v~~v~~s~d~~~la~~ 508 (916)
.++. .....+|..++||++|.. ....|.+|.+... ..+..+. +...+...++++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 4332 126789999999999977 3458888887543 2233222 2447899999999999999
Q ss_pred e--CCeEEEEec--CCcceEEEee
Q 002490 509 S--KHAIIIASK--KLVHQCTLHE 528 (916)
Q Consensus 509 ~--~~~i~i~~~--~~~~~~~~~~ 528 (916)
. .++|.+|.+ +++.+..+..
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEeccc
Confidence 8 456777754 5666665544
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.4e-10 Score=130.69 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=150.3
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC---CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d---g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
..|.++|.. +...+.+..+...+.+.+|+|+|++|+.++.+ ..|.+||+.+++... +..+...+.+++|+||++.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 468888875 44455566677789999999999999887643 489999999876543 3345566778999999997
Q ss_pred EEEE-ECCC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECC-C--eEEEEECCCCcceeccCCccceee
Q 002490 108 IVSA-SDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-Q--TVRVWDIGALRKKTVSPADDILRL 181 (916)
Q Consensus 108 l~s~-s~dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~~~ 181 (916)
|+.. +.++ .|++||+.+++. ..+..+........|+|+++.|+..+.. + .|.++|+.+.+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----------- 315 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----------- 315 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 7644 4343 588999887754 3444455555678999999988776643 3 5777777653321
Q ss_pred ccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC---cEEEEECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
.+..+........|+|++++++.++.++ .|.+||+.++.. ..+... .......|+|
T Consensus 316 -----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~~-~~~~~p~~sp 374 (417)
T TIGR02800 316 -----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTDT-GLDESPSFAP 374 (417)
T ss_pred -----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccCC-CCCCCceECC
Confidence 1222344566789999999999888765 788999887553 222222 2234568999
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCceeEEee
Q 002490 259 KQDIIVSNSEDK---SIRVWDVTKRTGVQTFR 287 (916)
Q Consensus 259 ~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~ 287 (916)
+++.|+..+.++ .+.+.+.. +.....+.
T Consensus 375 dg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 375 NGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred CCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 999888877654 35555533 44444443
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=2.3e-11 Score=119.85 Aligned_cols=251 Identities=17% Similarity=0.301 Sum_probs=186.6
Q ss_pred CcccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECC-CCceEEEe-cccccCEEEEEEecCCCEEEEEECCCeEEEE
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR-MGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (916)
Q Consensus 1 ~l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~-~~~~~~~~-~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vW 78 (916)
++++++||.+.|+....-|..+-+++.+.|.+++||--+ .++.-..+ ..-..+++++.++++...|+.|-+.|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 478899999999999999988889999999999999643 33322222 2346779999999999999999999999988
Q ss_pred ECC----CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE
Q 002490 79 NYK----MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 79 d~~----~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 154 (916)
.+. ....++....|...|..+-|+....++++.+.|..+.---.+++..+..+.- ...-+++.+.-. +...|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 664 3445566678999999999999999999999998765433444443322110 001111111111 334444
Q ss_pred CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECC
Q 002490 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (916)
Q Consensus 155 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~ 234 (916)
..|.|..-.+... ...+...+.+|...+.+++|.|...++.+|..|..+.+||+.
T Consensus 173 ~~gqvt~lr~~~~-------------------------~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 173 HSGQITMLKLEQN-------------------------GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEEEEEeec-------------------------CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 4555544443221 112456788999999999999999999999999999999998
Q ss_pred CCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 002490 235 ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 280 (916)
..+. ....+.+|...|..+..-+--+.++++++||.|.+|+++..
T Consensus 228 g~~g-~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 GRKG-TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CCcc-eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 7664 35677899999999998888889999999999999998753
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.2e-10 Score=129.19 Aligned_cols=234 Identities=9% Similarity=0.001 Sum_probs=154.7
Q ss_pred eEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC---CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEE
Q 002490 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (916)
Q Consensus 32 ~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d---g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l 108 (916)
.|.++|...+. .+.+..+..++....|+|+|+.|+..+.+ ..|.+|++.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876444 45565678889999999999998876643 479999998876543 33334455678999999987
Q ss_pred EE-EECCC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CC--eEEEEECCCCcceeccCCccceeec
Q 002490 109 VS-ASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLS 182 (916)
Q Consensus 109 ~s-~s~dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~ 182 (916)
+. .+.++ .|++||+.+++.. .+..+........|+|+|+.++..+. ++ .|.++++.+++....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l---------- 326 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV---------- 326 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe----------
Confidence 74 44454 6888899887654 45555556677899999998776664 33 566777765442211
Q ss_pred cccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC-C--cEEEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-R--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
... ........|+|+|+.++..+.+ + .|.+||+.++.. ..+.. ........|+|+
T Consensus 327 ----------------t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt~-~~~~~~p~~spd 384 (430)
T PRK00178 327 ----------------TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV---RILTD-TSLDESPSVAPN 384 (430)
T ss_pred ----------------ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE---EEccC-CCCCCCceECCC
Confidence 111 1122356899999998887653 2 478889888764 22221 112235689999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 260 QDIIVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 260 ~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
|+.++..+.+ ..|.++++. +...+.+....+.+...+|+|-
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 9999877654 347777774 3444445444455666677663
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.37 E-value=5.2e-09 Score=110.11 Aligned_cols=277 Identities=11% Similarity=0.073 Sum_probs=180.5
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC----------CCeEEEEECCCCe
Q 002490 20 KRPWILASLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD----------DYKIKVWNYKMHR 84 (916)
Q Consensus 20 ~~~~la~~~~d-----g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~----------dg~I~vWd~~~~~ 84 (916)
+..++.+.... ++|.+.|..+++.+..+..-..+- .+ +||+++.|.++.. +..|.+||..+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 45566665443 899999999999999887544443 35 9999998776654 7899999999999
Q ss_pred eEEEEecCC-------CCEEEEEEcCCCCEEEEEE-C-CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC
Q 002490 85 CLFTLLGHL-------DYIRTVQFHHEYPWIVSAS-D-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (916)
Q Consensus 85 ~~~~l~~h~-------~~v~~v~fs~~~~~l~s~s-~-dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 155 (916)
.+..+.... .....++++|||++++... . +..|.+.|+.+++.+..+.-.. ...-...+++. .. +.+.
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~ 165 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCR 165 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEee
Confidence 998886422 2344789999999888776 3 6899999999999998886422 11112222222 22 2234
Q ss_pred CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec-----cCCCeeEEEEcC-CCCEEEEEECCCcEE
Q 002490 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG-----HDRGVNWAAFHP-TLPLIVSGADDRQVK 229 (916)
Q Consensus 156 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p-~~~~l~~~~~dg~v~ 229 (916)
||......+....+..... ...+.+ ..++ .|.+ +|.++.+... |.|.
T Consensus 166 Dg~~~~v~~d~~g~~~~~~----------------------~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~ 218 (352)
T TIGR02658 166 DGSLAKVGYGTKGNPKIKP----------------------TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIF 218 (352)
T ss_pred cCceEEEEecCCCceEEee----------------------eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEE
Confidence 5555554443322111000 001111 0122 4455 7777777665 9999
Q ss_pred EEECCCCcc-----eeeeeee-----cCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEECCCCceeEEeecc
Q 002490 230 LWRMNETKA-----WEVDTLR-----GHMNNVSCVMFHAKQDIIVSNS----------EDKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 230 iwd~~~~~~-----~~~~~~~-----~~~~~v~~l~~sp~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~ 289 (916)
+.|+..... +...+.. ...+...-++++|+++.+++.. ..+.|.++|..+++.+..+..
T Consensus 219 ~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 219 QIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred EEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 999654332 2221111 1233344599999999888843 124799999999999988875
Q ss_pred CCcEEEEEEecCCC-eEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeE
Q 002490 290 HDRFWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (916)
Q Consensus 290 ~~~i~~l~~sp~~~-~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~ 354 (916)
..+++.++++||++ ++.+... .++.|.++|..+++.+..+
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~-------------------------~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALST-------------------------GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCC-------------------------CCCcEEEEECcCCeEEeee
Confidence 45789999999999 6655442 2366788888887665554
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.2e-10 Score=128.45 Aligned_cols=233 Identities=9% Similarity=0.026 Sum_probs=150.3
Q ss_pred eEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC---CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEE
Q 002490 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (916)
Q Consensus 32 ~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d---g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l 108 (916)
.|.++|... ...+.+..+..++.+..|+|+|+.|+..+.+ ..|.+||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG-~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDG-YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCC-CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 677778644 3345566677889999999999988876542 368899998776432 22223334578999999977
Q ss_pred EE-EECCCc--EEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CC--eEEEEECCCCcceeccCCccceeec
Q 002490 109 VS-ASDDQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLS 182 (916)
Q Consensus 109 ~s-~s~dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~ 182 (916)
+. .+.++. |+++|+.+++. ..+..+........|+|+++.|+..+. ++ .|.++|+.+++...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----------- 344 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----------- 344 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----------
Confidence 65 455664 77888887764 444545556678899999998876653 33 45666665543221
Q ss_pred cccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC-CC--cEEEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DR--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
....+ ......+|+|+|++|+..+. ++ .|.++|+.++.. ..+... .......|+|+
T Consensus 345 ---------------Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~-~~d~~ps~spd 403 (448)
T PRK04792 345 ---------------LTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTST-RLDESPSVAPN 403 (448)
T ss_pred ---------------EecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe---EEccCC-CCCCCceECCC
Confidence 11111 22334689999998877665 33 455567777663 222221 11224579999
Q ss_pred CCEEEEEeCC-C--cEEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 260 QDIIVSNSED-K--SIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 260 ~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
|+.|+..+.+ + .+.+++. ++.....+....+.+...+|+|
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 9988776543 3 3777786 4555666655556667777776
No 269
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.1e-10 Score=129.32 Aligned_cols=221 Identities=10% Similarity=0.005 Sum_probs=147.4
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEE-EECCC--eEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDY--KIKV 77 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~d---g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s-~~~dg--~I~v 77 (916)
.+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|+. .+.++ .|.+
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 345667788999999999999876543 469999998886543 3334455667899999998874 44444 6888
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 154 (916)
||+.+++.. .+..+........|+||++.|+..+. ++ .|+++++.+++..... ..........|+|+|+.++..+
T Consensus 272 ~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEE
Confidence 899877643 45555666677899999998876664 33 5778888777643322 2223344578999999888776
Q ss_pred CC-C--eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---CcE
Q 002490 155 LD-Q--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQV 228 (916)
Q Consensus 155 ~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v 228 (916)
.+ + .|.+||+.+++.... . +........|+|+|+.++..+.+ ..+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~~l----------------------------t-~~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVRIL----------------------------T-DTSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred ccCCceEEEEEECCCCCEEEc----------------------------c-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 53 3 578888877543221 1 11112245899999988877653 346
Q ss_pred EEEECCCCcceeeeeeecCCCCeEEEEEccC
Q 002490 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (916)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~ 259 (916)
.+++..... ...+..+.+.+...+|+|-
T Consensus 401 ~~~~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 401 MLVSINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEECCCCc---eEECcCCCCCcCCCccCCC
Confidence 677775543 3334444556677778763
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=1.8e-10 Score=129.86 Aligned_cols=200 Identities=14% Similarity=0.094 Sum_probs=139.8
Q ss_pred cccccCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEE-ECC--CeEEE
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDD--YKIKV 77 (916)
Q Consensus 4 ~l~~h~~~V~~l~~sp~~~~la~~~~d---g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~-~~d--g~I~v 77 (916)
.+..+...+.+.+|||||++|+.+... ..|.+||+.+++... +..+.+.+.+++|+|+++.|+.. +.+ ..|.+
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344566678899999999999987643 479999998886543 33466677889999999877644 433 36889
Q ss_pred EECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE
Q 002490 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 154 (916)
|++.++.. ..+..+........|+|++++|+.++.. + .|.++|+.+++.. .+..+...+....|+|++++++.++
T Consensus 263 ~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 263 MDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEE
Confidence 99887654 3344455555677999999988876653 3 5888888776643 4444556677889999999999888
Q ss_pred CCC---eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC---cE
Q 002490 155 LDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QV 228 (916)
Q Consensus 155 ~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg---~v 228 (916)
.++ .|.+||+.+..... +... .......|+|+++.|+..+.++ .+
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~----------------------------l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERV----------------------------LTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred ccCCceEEEEEeCCCCCeEE----------------------------ccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 776 78889887643221 1111 1223458999999888877654 34
Q ss_pred EEEECCC
Q 002490 229 KLWRMNE 235 (916)
Q Consensus 229 ~iwd~~~ 235 (916)
.+.+...
T Consensus 392 ~~~~~~g 398 (417)
T TIGR02800 392 GLVSTDG 398 (417)
T ss_pred EEEECCC
Confidence 5555443
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.2e-08 Score=102.64 Aligned_cols=274 Identities=14% Similarity=0.151 Sum_probs=173.8
Q ss_pred CCeEEEEECCCCee---EEEEecCCCCEEEEEEcCCCCEEEEEECC---CcEEEEeCCC--CeEE--EEEeCCCCceEEE
Q 002490 72 DYKIKVWNYKMHRC---LFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQS--RTCI--SVLTGHNHYVMCA 141 (916)
Q Consensus 72 dg~I~vWd~~~~~~---~~~l~~h~~~v~~v~fs~~~~~l~s~s~d---g~I~iwd~~~--~~~~--~~~~~h~~~v~~l 141 (916)
+.-|.+|++.+.+- ...+..+.+.++-++|+|+++.|.++..+ |.|.-|.+.. |+.. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999873221 12223467788999999999988887654 6777777653 5432 2222333444889
Q ss_pred EEecCCCEEEEEEC-CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCC----------CeeEE
Q 002490 142 SFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR----------GVNWA 210 (916)
Q Consensus 142 ~~~p~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~ 210 (916)
++++++++++++.. .|.|.++-++..-..... .....|.+ .+...
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~------------------------v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV------------------------VQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccc------------------------eeeeecCCCCCCccccCCcccee
Confidence 99999998888764 588999988652111100 01111222 27788
Q ss_pred EEcCCCCEEEEEEC-CCcEEEEECCCCcceeeeeee-cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCC-c---ee
Q 002490 211 AFHPTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKR-T---GV 283 (916)
Q Consensus 211 ~~~p~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~-~---~~ 283 (916)
.+.|++++|++..- .-+|.+|++..++..+..... ........+.|||++++..+.++ +++|.+|..+.. . .+
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 99999999888762 346999999987753222211 23455788999999999887765 789999998763 2 22
Q ss_pred EEeec------cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccC--CceeeeEE
Q 002490 284 QTFRR------EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST--QKDTQVIP 355 (916)
Q Consensus 284 ~~~~~------~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~--~~~~~~~~ 355 (916)
+++.. .......|..+|+|++|.++.. ....|.+|.+.. ++......
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-------------------------g~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-------------------------GHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecC-------------------------CCCeEEEEEEcCCCCEEEEEEE
Confidence 32221 1223456777888888776542 122344444433 22111112
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCC
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~ 400 (916)
....+. .++.+.++|.|++|+++.. ++..+.+|..+...
T Consensus 286 ~~teg~-----~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~~T 324 (346)
T COG2706 286 TPTEGQ-----FPRDFNINPSGRFLIAANQ-KSDNITVFERDKET 324 (346)
T ss_pred eccCCc-----CCccceeCCCCCEEEEEcc-CCCcEEEEEEcCCC
Confidence 222222 6889999999998877765 66689999987653
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.4e-10 Score=123.59 Aligned_cols=224 Identities=13% Similarity=0.071 Sum_probs=142.9
Q ss_pred ccccCCCEEEEEEeCCCCEEE---EEecC--CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC-----CCe
Q 002490 5 FETKSNRVKGLSFHSKRPWIL---ASLHS--GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-----DYK 74 (916)
Q Consensus 5 l~~h~~~V~~l~~sp~~~~la---~~~~d--g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~-----dg~ 74 (916)
|......+.+-+|||||+.++ ++..+ ..|.+.++.+++..+ +....+.....+|||||+.|+..++ +-.
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 333445667789999997532 44444 357788887775433 3334555667899999998887653 223
Q ss_pred EEEEECCCC---eeEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEE--eCCC-CeEEEEEeCCCCceEEEEEecCC
Q 002490 75 IKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIW--NWQS-RTCISVLTGHNHYVMCASFHPKE 147 (916)
Q Consensus 75 I~vWd~~~~---~~~~~l~~h~~~v~~v~fs~~~~~l~s~s-~dg~I~iw--d~~~-~~~~~~~~~h~~~v~~l~~~p~~ 147 (916)
+..|++.++ +......++.......+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|+|
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444777653 32222223334456789999999888766 35655555 4432 33345555555677889999999
Q ss_pred CEEEEEECC---CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC
Q 002490 148 DLVVSASLD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (916)
Q Consensus 148 ~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 224 (916)
+.|+..+.+ ..|.+||+.+++... +......+....|+|+|+.|+..+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~----------------------------Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ----------------------------LTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE----------------------------ccCCCCCccceEECCCCCEEEEEEC
Confidence 988876643 468999998765432 1112234567899999998876543
Q ss_pred ---CCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCC
Q 002490 225 ---DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (916)
Q Consensus 225 ---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~ 260 (916)
...|.++++.+++. ..+....+.+...+|+|..
T Consensus 391 ~~g~~~L~~vdl~~g~~---~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKT---RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCE---EEeecCCCcccCceecCCC
Confidence 34688889888774 3333344556678888754
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=3.1e-10 Score=111.92 Aligned_cols=257 Identities=12% Similarity=0.229 Sum_probs=170.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC-Ce----EEEEEeCCC------------CceEEEEEecCCC--EEEE
Q 002490 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RT----CISVLTGHN------------HYVMCASFHPKED--LVVS 152 (916)
Q Consensus 92 h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-~~----~~~~~~~h~------------~~v~~l~~~p~~~--~l~s 152 (916)
..+-|.++.|...|.+|++|..+|.|.++.-.. .+ ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456789999999999999999999999996432 21 223344443 3578899998775 6777
Q ss_pred EECCCeEEEEECCCCcceecc---CC-ccceeeccccccccccccce-----EEEEEeccCCCeeEEEEcCCCCEEEEEE
Q 002490 153 ASLDQTVRVWDIGALRKKTVS---PA-DDILRLSQMNTDLFGGVDAV-----VKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 223 (916)
.+.|.+|++|.++....+... +. .....+++....+.+..+.. .+..-..|..-|++++++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 788999999999765443311 00 00001111111122221111 1223456888999999999999888764
Q ss_pred CCCcEEEEECCCCcc-eeeeeeecCC-----CCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeE----Eee-----
Q 002490 224 DDRQVKLWRMNETKA-WEVDTLRGHM-----NNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGVQ----TFR----- 287 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~-~~~~~~~~~~-----~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~----~~~----- 287 (916)
|=.|.+|++.-... ..+..++.+. ..|++..|||. .+.++..+..|+|++-|++...... .+.
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 78899999864332 2233334332 35889999994 5678888889999999998432211 111
Q ss_pred -------ccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCc-c-----------------------------eEEecCC
Q 002490 288 -------REHDRFWILASHPEMNLLAAGHDSGMIVFKLERER-P-----------------------------AFAVSGD 330 (916)
Q Consensus 288 -------~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~-~-----------------------------~~s~~~~ 330 (916)
.--..|..+.|+++|+++.+-.--.+.+|++..+. | .++-++.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 11245778999999999999988899999996543 2 2333334
Q ss_pred EEEEE-eCCeEEEEEccCCc
Q 002490 331 SLFYA-KDRFLRYYEFSTQK 349 (916)
Q Consensus 331 ~l~~~-~d~~i~~~d~~~~~ 349 (916)
.++++ ..+.+++|+...|.
T Consensus 343 ~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eEecccccceEEEecCCCCc
Confidence 67777 88889999966543
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=2.7e-08 Score=104.82 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=149.5
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEECCCCcceeeeeeecC-------CCCeEEEEEccCCCEEEEEe-C-CCcE
Q 002490 212 FHPTLPLIVSGAD----------DRQVKLWRMNETKAWEVDTLRGH-------MNNVSCVMFHAKQDIIVSNS-E-DKSI 272 (916)
Q Consensus 212 ~~p~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~s~~-~-dg~i 272 (916)
++|+++.++++.. +..|.+||..+.+. +..+.-. ......++++|+|++|++.. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999998777665 78999999999886 5444421 12334789999999998765 3 6889
Q ss_pred EEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceee
Q 002490 273 RVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (916)
Q Consensus 273 ~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~ 352 (916)
.+.|+.+++.+.++.... .......+.+.. ++.+.|+......++ .++....-+ .+
T Consensus 131 ~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~~~~~Dg~~~~v~~d----------------~~g~~~~~~------~~ 186 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-FMHCRDGSLAKVGYG----------------TKGNPKIKP------TE 186 (352)
T ss_pred EEEECCCCcEEEEEeCCC-CcEEEEecCCcc-EEEeecCceEEEEec----------------CCCceEEee------ee
Confidence 999999999998887532 222222222222 222222222211111 233322111 01
Q ss_pred eEEecCCCCCCCCcCCeEEEEcC-CCCEEEEEEcCCCCEEEEEEeeCCCCCCCcc--c--c-----ccccCceeEEEEEe
Q 002490 353 VIPIRRPGSTSLNQSPRTLSYSP-TENAVLICSDVDGGSYELYVIPKDSIGRGDS--V--Q-----DAKKGLGGSAIFIA 422 (916)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~l~~sp-~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~--~--~-----~~~~~~i~~~~fs~ 422 (916)
++..... .+...+ .|++ +|+.+.++.. |.+.+.++.......... . . .-..+...-+++++
T Consensus 187 vf~~~~~---~v~~rP---~~~~~dg~~~~vs~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 187 VFHPEDE---YLINHP---AYSNKSGRLVWPTYT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eecCCcc---ccccCC---ceEcCCCcEEEEecC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 1100000 000022 4455 7777766664 888888865443221110 0 0 11223344599999
Q ss_pred CCcEEEEE----------cCCCEEEEEccCC-ceEEEeeCCCceeEEEEeCCce-EEEE---ECCEEEEEEcCCCeEEEE
Q 002490 423 RNRFAVLD----------KSSNQVLVKNLKN-EVVKKSILPIAADAIFYAGTGN-LLCR---AEDRVVIFDLQQRLVLGD 487 (916)
Q Consensus 423 ~~~~l~~~----------~~d~~I~iwdl~~-~~~~~i~~~~~v~~l~~s~~g~-~l~~---~d~~v~l~d~~~~~~~~~ 487 (916)
+++.+... ...+.|.++|..+ +.+.++.....+..++++|||+ +|.. .++.|.++|+.+++.+.+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 98776663 1236899999985 6777888777999999999999 6665 467899999999999998
Q ss_pred EE
Q 002490 488 LQ 489 (916)
Q Consensus 488 ~~ 489 (916)
+.
T Consensus 338 i~ 339 (352)
T TIGR02658 338 VN 339 (352)
T ss_pred ec
Confidence 83
No 275
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.8e-10 Score=125.66 Aligned_cols=217 Identities=10% Similarity=0.027 Sum_probs=139.9
Q ss_pred ccCCCEEEEEEeCCCCEEEEEec-C--CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEE-EECCCe--EEEEEC
Q 002490 7 TKSNRVKGLSFHSKRPWILASLH-S--GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDYK--IKVWNY 80 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~-d--g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s-~~~dg~--I~vWd~ 80 (916)
.+...+.+.+|||||++|+..+. + ..|.+||+.+++... +....+.....+|+|+|+.|+. .+.++. |.+||+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 34456778999999999987654 2 368899988876432 3222334457899999998765 455564 788888
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECC-
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD- 156 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d- 156 (916)
.+++. ..+..+........|+||+++|+..+. ++ .|.++|+.+++... +...........|+|+|++|+..+.+
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecC
Confidence 87654 445555566778899999998876654 33 57777887776443 32223334557899999988776553
Q ss_pred C--eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC-C--cEEEE
Q 002490 157 Q--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-R--QVKLW 231 (916)
Q Consensus 157 g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g--~v~iw 231 (916)
+ .|.++|+.++..... ... .......|+|+|+.|+..+.+ + .+.++
T Consensus 372 g~~~I~~~dl~~g~~~~l----------------------------t~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 372 GKFNIARQDLETGAMQVL----------------------------TST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred CceEEEEEECCCCCeEEc----------------------------cCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 4 355567666433211 111 111234799999988776643 3 36677
Q ss_pred ECCCCcceeeeeeecCCCCeEEEEEcc
Q 002490 232 RMNETKAWEVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~v~~l~~sp 258 (916)
+..... ...+..+.+.+...+|+|
T Consensus 423 ~~~G~~---~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 423 SIDGRF---KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECCCCc---eEECcCCCCCcCCCccCC
Confidence 765443 444555556677788887
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1e-09 Score=122.04 Aligned_cols=239 Identities=12% Similarity=0.024 Sum_probs=150.9
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCE--E-EEEECC--CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCC
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPL--F-VSGGDD--YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY 105 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~--l-~s~~~d--g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~ 105 (916)
+.|.+.|...+ ..+.+......+.+-+|||||+. + .+...+ ..|.+.++.+++... +....+......|+|||
T Consensus 165 ~~l~~~d~dG~-~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQ-NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCC-CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 46888886544 34456556667788899999975 2 233333 467778888765433 33344455678999999
Q ss_pred CEEEEEEC-CC----cEEEEeCCC---CeEEEEEeCCCCceEEEEEecCCCEEEEEE-CCCeEEEEEC--CCCcceeccC
Q 002490 106 PWIVSASD-DQ----TIRIWNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI--GALRKKTVSP 174 (916)
Q Consensus 106 ~~l~s~s~-dg----~I~iwd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~v~vwd~--~~~~~~~~~~ 174 (916)
+.|+..+. +| .+.+|++.+ ++.......+.......+|+|||+.|+..+ .+|...+|.+ .....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~----- 317 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ----- 317 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----
Confidence 98887653 22 344477664 233333333334456789999999887766 4565555543 21100
Q ss_pred CccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---CcEEEEECCCCcceeeeeeecCCCCe
Q 002490 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNV 251 (916)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v 251 (916)
....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++. ..+......+
T Consensus 318 ---------------------~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~ 373 (428)
T PRK01029 318 ---------------------SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENK 373 (428)
T ss_pred ---------------------ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCc
Confidence 011233344566788999999988877643 4689999988874 3333333456
Q ss_pred EEEEEccCCCEEEEEeC---CCcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 252 SCVMFHAKQDIIVSNSE---DKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 252 ~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
....|+|+|+.|+..+. ...|.++|+..++..... ...+.+...+|+|-
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 78899999998876543 346888998877654433 34445566777764
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=6.3e-10 Score=109.95 Aligned_cols=199 Identities=19% Similarity=0.327 Sum_probs=149.6
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECC----CCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYR----MGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~----~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
..++++++++++...|++|-.+|++.-+.+. ....++....|..+|..+-|+....++++.+.|..+.---.+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 4688999999999999999999999988653 445666777899999999999999999999998765433334443
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeC--CCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW--QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
.+..+.- ...-+++.|.-. +...|...|.|..-.+ ..-.++.++.+|...+.++.|.|....+.+|..|..+.+|
T Consensus 148 ~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 148 RLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred cccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 3322210 000011111111 3444555555555443 4556788999999999999999999999999999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~ 236 (916)
|+...+- ..+.+.+|...|..+...+.-..+++++.||.|.+|+++..
T Consensus 225 digg~~g--------------------------~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 225 DIGGRKG--------------------------TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eccCCcc--------------------------eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 9977443 34578889999999999888889999999999999998643
No 278
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.1e-09 Score=113.02 Aligned_cols=188 Identities=14% Similarity=0.173 Sum_probs=150.8
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeeEEEEec---CCCCEEEEEEc--------------------CCCCEEEEEECCCc
Q 002490 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG---HLDYIRTVQFH--------------------HEYPWIVSASDDQT 116 (916)
Q Consensus 60 sp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~---h~~~v~~v~fs--------------------~~~~~l~s~s~dg~ 116 (916)
.|...++|....||.+++|+..+++....+.. -.+..++..|. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567899999999999999998887776642 22334444441 23346788888999
Q ss_pred EEEEeCCCCeEEEEEe--CCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccc
Q 002490 117 IRIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (916)
Q Consensus 117 I~iwd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (916)
|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------------------------- 136 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------------------------- 136 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-------------------------
Confidence 9999999999888775 6899999999998888999999999999999877543
Q ss_pred eEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-----CCEEEEE-eC
Q 002490 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QDIIVSN-SE 268 (916)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s~-~~ 268 (916)
..........+.+++.+||+..+++++ ++|++||+++.+. +.++.+|.++|.+++|... |.+++++ ..
T Consensus 137 --~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 137 --IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred --eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 335556677888999999999999886 7999999999997 8999999999999999876 6666654 34
Q ss_pred CCcEEEEECC
Q 002490 269 DKSIRVWDVT 278 (916)
Q Consensus 269 dg~i~vwd~~ 278 (916)
+..+.+|-+.
T Consensus 211 ~r~i~~w~v~ 220 (541)
T KOG4547|consen 211 ERGITVWVVE 220 (541)
T ss_pred ccceeEEEEE
Confidence 5557777554
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.9e-09 Score=114.63 Aligned_cols=189 Identities=16% Similarity=0.252 Sum_probs=156.6
Q ss_pred eCCCCEEEEEecCCeEEEEECCCCceEEEecc---cccCEEEEEEe--------------------cCCCEEEEEECCCe
Q 002490 18 HSKRPWILASLHSGVIQLWDYRMGTLIDRFDE---HDGPVRGVHFH--------------------KSQPLFVSGGDDYK 74 (916)
Q Consensus 18 sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~---h~~~V~~i~fs--------------------p~~~~l~s~~~dg~ 74 (916)
.|-..++|....||.+++|+..+++....|.. -.+..++..|. .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567899999999999999999988887753 23444555552 12346888888999
Q ss_pred EEEEECCCCeeEEEEe--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEE
Q 002490 75 IKVWNYKMHRCLFTLL--GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (916)
Q Consensus 75 I~vWd~~~~~~~~~l~--~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s 152 (916)
|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.....+..+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999888775 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-----CCEEEEEE-CCC
Q 002490 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSGA-DDR 226 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~~-~dg 226 (916)
++ ++|.+||+++.+. ...+.||.++|.+++|--. |.+++++. .+.
T Consensus 162 as--~~ik~~~~~~kev---------------------------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEV---------------------------VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred cc--ceEEEEEccCceE---------------------------EEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 87 7899999998663 4578899999999999876 66665543 456
Q ss_pred cEEEEECCC
Q 002490 227 QVKLWRMNE 235 (916)
Q Consensus 227 ~v~iwd~~~ 235 (916)
.+.+|-...
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 677776554
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.6e-10 Score=135.84 Aligned_cols=201 Identities=19% Similarity=0.351 Sum_probs=163.8
Q ss_pred ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE
Q 002490 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~ 127 (916)
.|-..|+++.=||..++.+||+.||.|++|....++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|... .++
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 355678999999999999999999999999998888776664 223789999999999999999999999999975 667
Q ss_pred EEEEeCCCCceEEEEEecCCCEEEEEE---CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC
Q 002490 128 ISVLTGHNHYVMCASFHPKEDLVVSAS---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (916)
Q Consensus 128 ~~~~~~h~~~v~~l~~~p~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (916)
....+.|+.....+.|-. ..+++++ .++.+.+||..-.... -++...|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~--------------------------s~v~~~H~ 2336 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN--------------------------SLVHTCHD 2336 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc--------------------------ceeeeecC
Confidence 777888999988888875 5677664 4688999996432211 12337899
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE
Q 002490 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 284 (916)
++++++++-|..++|++|+.+|.|++||++..+. ..+++. ++ ...++++++..|.|+||++.....+.
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhheeeccCcccceEEEEccccchhh
Confidence 9999999999999999999999999999988775 333332 45 66789999999999999999887777
Q ss_pred EeeccC
Q 002490 285 TFRREH 290 (916)
Q Consensus 285 ~~~~~~ 290 (916)
++....
T Consensus 2405 ~~p~e~ 2410 (2439)
T KOG1064|consen 2405 TFPSEH 2410 (2439)
T ss_pred cCchhh
Confidence 776443
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.8e-10 Score=135.43 Aligned_cols=192 Identities=18% Similarity=0.348 Sum_probs=156.8
Q ss_pred ccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEec-ccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCee
Q 002490 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (916)
Q Consensus 7 ~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~-~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~ 85 (916)
-|-..|.++.=||..++-++|+.||.|++|.+..+..+..++ .-...|+.+.|+.+|+.+..+..||.+.+|... .+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 345678899999999999999999999999999888887775 234889999999999999999999999999987 677
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEE---CCCcEEEEeCC-CCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE
Q 002490 86 LFTLLGHLDYIRTVQFHHEYPWIVSAS---DDQTIRIWNWQ-SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 86 ~~~l~~h~~~v~~v~fs~~~~~l~s~s---~dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v 161 (916)
....+.|........|-. ..+++++ +++.+.+||.- .+..-..-+.|.+.++++++-|..++|++|+.+|.|++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 777788999888888876 4566654 46899999964 22222222889999999999999999999999999999
Q ss_pred EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
||++..+.....+ . ++ ...++++|+..|.++||++.....
T Consensus 2363 ~D~rqrql~h~~~--------------------------------~----~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQ--------------------------------A----LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred eehHHHHHHHHhh--------------------------------h----hh-hhheeeccCcccceEEEEccccch
Confidence 9998755443211 1 44 567899999999999999987654
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=5e-09 Score=101.64 Aligned_cols=242 Identities=16% Similarity=0.133 Sum_probs=163.0
Q ss_pred CCEEEEEEeC---CCC-EEEEEecCCeEEEEECCCCceEEEeccc---cc---CEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 10 NRVKGLSFHS---KRP-WILASLHSGVIQLWDYRMGTLIDRFDEH---DG---PVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 10 ~~V~~l~~sp---~~~-~la~~~~dg~I~lwd~~~~~~~~~~~~h---~~---~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
+.+..+.|.- +|. .++.+-..|.|+++..........+++- .- .-.++.|++.+.-++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455555543 344 4556667888998876544333333321 11 235788999999999999999999666
Q ss_pred CCCCeeE--EEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCC-CCeEEEE-EeCCCCceEEEEEecC-CCEEEEE
Q 002490 80 YKMHRCL--FTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQ-SRTCISV-LTGHNHYVMCASFHPK-EDLVVSA 153 (916)
Q Consensus 80 ~~~~~~~--~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~-~~~~~~~-~~~h~~~v~~l~~~p~-~~~l~s~ 153 (916)
....... ++.+.|.-..+...|+...+ .+.+|++|+.+..||++ .++.+.. .+-|...|.++.-+|. +.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 5554443 47889999999999986554 88999999999999998 4555554 5678889999998874 5699999
Q ss_pred ECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEE
Q 002490 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWR 232 (916)
Q Consensus 154 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd 232 (916)
+.|-.|++||.++..+.... ..-.++|+.+.++|.-. .++.++.-+-.+|-+
T Consensus 230 sYDe~i~~~DtRnm~kPl~~---------------------------~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFK---------------------------AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred ccccceeeeehhcccCcccc---------------------------CccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 99999999999875443211 11237899999999543 233333444467777
Q ss_pred CCCCcce---eeeeeecCCCCeEEEEEccCCCEEEEEe-CCCcEE-EEECC
Q 002490 233 MNETKAW---EVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIR-VWDVT 278 (916)
Q Consensus 233 ~~~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~s~~-~dg~i~-vwd~~ 278 (916)
.+..... .......|.+-+..-.|......|++++ .|+.++ +|-.-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 7665432 2344456666666666654455677765 355544 55433
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=6.6e-08 Score=118.48 Aligned_cols=258 Identities=15% Similarity=0.181 Sum_probs=164.8
Q ss_pred EEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEecc--c------------ccCEEEEEEecCCCEEEEE-ECCCeEE
Q 002490 13 KGLSFHSK-RPWILASLHSGVIQLWDYRMGTLIDRFDE--H------------DGPVRGVHFHKSQPLFVSG-GDDYKIK 76 (916)
Q Consensus 13 ~~l~~sp~-~~~la~~~~dg~I~lwd~~~~~~~~~~~~--h------------~~~V~~i~fsp~~~~l~s~-~~dg~I~ 76 (916)
..++++++ +..+++-..++.|++||. +++.+..+.+ . -..-.++++++++..|.++ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46889885 445555566788999996 4555544432 1 1124789999988765444 4567899
Q ss_pred EEECCCCeeEEEEecC-----------------CCCEEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEEeCC----
Q 002490 77 VWNYKMHRCLFTLLGH-----------------LDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGH---- 134 (916)
Q Consensus 77 vWd~~~~~~~~~l~~h-----------------~~~v~~v~fs~-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h---- 134 (916)
++|..++. +.++.+. ......++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 4333211 12346799999 5556677777889999998877543 22111
Q ss_pred -----------CCceEEEEEecCCCE-EEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec
Q 002490 135 -----------NHYVMCASFHPKEDL-VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (916)
Q Consensus 135 -----------~~~v~~l~~~p~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (916)
-.....++++|+++. +++-+.++.|++||+.++............ ..+...++..++... ..
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~---~~~l~~fG~~dG~g~---~~ 801 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF---SDNLFKFGDHDGVGS---EV 801 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc---CcccccccCCCCchh---hh
Confidence 123567999999984 455566789999999865432111000000 000000111110000 00
Q ss_pred cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeec--------------CCCCeEEEEEccCCCEEEEEeC
Q 002490 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG--------------HMNNVSCVMFHAKQDIIVSNSE 268 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~v~~l~~sp~~~~l~s~~~ 268 (916)
.-.....++++++|.++++-+.++.|++||..++.. .++.+ .......++++++|+++++.+.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v---~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV---TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE---EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 112235789999999888888999999999987763 22222 2235788999999999999999
Q ss_pred CCcEEEEECCCCce
Q 002490 269 DKSIRVWDVTKRTG 282 (916)
Q Consensus 269 dg~i~vwd~~~~~~ 282 (916)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999988764
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.5e-07 Score=100.73 Aligned_cols=196 Identities=13% Similarity=0.207 Sum_probs=125.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCC-eEEEEEccCCCEEEEEeCCCc-----EEEEECCCC---
Q 002490 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN-VSCVMFHAKQDIIVSNSEDKS-----IRVWDVTKR--- 280 (916)
Q Consensus 210 ~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~~~dg~-----i~vwd~~~~--- 280 (916)
-+|++.+..++.|+.+|.|.+.+-.-.. +..+..+... |..+....+..+|++.++|+. +++|++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~---~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQL---IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccccee---eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3578888999999999999888754322 3555656555 555444445578888887754 899998643
Q ss_pred ---cee---EEee----ccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCce
Q 002490 281 ---TGV---QTFR----REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (916)
Q Consensus 281 ---~~~---~~~~----~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~ 350 (916)
.++ ..+. ....++.+++.|.+-+.+|+|..+|.++..-. |+...+.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G------------------------Di~RDrg 161 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG------------------------DILRDRG 161 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC------------------------cchhccc
Confidence 222 1111 12457889999999999999988776543210 1111011
Q ss_pred eeeEEecCCCCCCCCcCCeEEEEcCCCCE-EEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEE
Q 002490 351 TQVIPIRRPGSTSLNQSPRTLSYSPTENA-VLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (916)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~sp~~~~-llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~ 429 (916)
. .......+ ..+|+.+++..+++. +.+++. ..|.+|.+.+.. .... ....+.....|..|++....+++
T Consensus 162 s-r~~~~~~~----~~pITgL~~~~d~~s~lFv~Tt---~~V~~y~l~gr~-p~~~-~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 162 S-RQDYSHRG----KEPITGLALRSDGKSVLFVATT---EQVMLYSLSGRT-PSLK-VLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred c-ceeeeccC----CCCceeeEEecCCceeEEEEec---ceeEEEEecCCC-ccee-eeccCCccceeeecCCCCccEEE
Confidence 1 11111112 239999999999988 344444 589999998554 2221 35667777888888877654455
Q ss_pred EcCCCEEEEEccCC
Q 002490 430 DKSSNQVLVKNLKN 443 (916)
Q Consensus 430 ~~~d~~I~iwdl~~ 443 (916)
++ +..|.+|+.++
T Consensus 232 a~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 232 AG-SEFLYFYDSDG 244 (933)
T ss_pred ec-CceEEEEcCCC
Confidence 55 58899999885
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=6.1e-08 Score=94.24 Aligned_cols=252 Identities=13% Similarity=0.093 Sum_probs=164.2
Q ss_pred cCCeEEEEECCCCceEE--Ee-cccccCEEEEEEec---CCC-EEEEEECCCeEEEEECCCCeeEEEEecCCC------C
Q 002490 29 HSGVIQLWDYRMGTLID--RF-DEHDGPVRGVHFHK---SQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLD------Y 95 (916)
Q Consensus 29 ~dg~I~lwd~~~~~~~~--~~-~~h~~~V~~i~fsp---~~~-~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~------~ 95 (916)
..|.+.+|++...+.+. .+ ..-...+..+.|.- ++. .++-+-.+|.|.++..........+.+-.. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34789999987765543 11 12344567777853 444 456667789999998765444444433221 2
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcceec
Q 002490 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS--VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTV 172 (916)
Q Consensus 96 v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~~~ 172 (916)
..++.|++.+..++++..+|.+.+-+........ .++.|.-....+.|+... +.+.+|+.|+.+..||++.....
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-- 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-- 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce--
Confidence 4577899999999999999999977665554443 778999999999997644 58999999999999999843211
Q ss_pred cCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-CCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCe
Q 002490 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251 (916)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 251 (916)
+-....-|..+|.++.-+|. ..++++|+.|-.|++||.++.... +.. ....+.|
T Consensus 202 -----------------------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-l~~-~~v~GGV 256 (339)
T KOG0280|consen 202 -----------------------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-LFK-AKVGGGV 256 (339)
T ss_pred -----------------------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-ccc-Cccccce
Confidence 11124458899999988874 669999999999999999864431 222 2234789
Q ss_pred EEEEEccCC--CEEEEEeCCCcEEEEECCCCce-----eEEeeccCCcEEEEEEecCCCeEEEE
Q 002490 252 SCVMFHAKQ--DIIVSNSEDKSIRVWDVTKRTG-----VQTFRREHDRFWILASHPEMNLLAAG 308 (916)
Q Consensus 252 ~~l~~sp~~--~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~sp~~~~la~g 308 (916)
+.+.++|.- .+|+++-. .-.+|-+.+.+.. ....+.|.+-...-.|.....++|++
T Consensus 257 WRi~~~p~~~~~lL~~CMh-~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMH-NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred EEEEecchhhhHHHHHHHh-cCceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 999999943 23444333 3356666554332 22233344434444443333455553
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=8.9e-08 Score=91.78 Aligned_cols=232 Identities=9% Similarity=0.013 Sum_probs=157.0
Q ss_pred cCCeEEEEECCCCc--eEEEecccccCEEEEEEecC-----CCEEEEEECCCeEEEEECCCCeeEEEE-ecCCCCEEEEE
Q 002490 29 HSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKS-----QPLFVSGGDDYKIKVWNYKMHRCLFTL-LGHLDYIRTVQ 100 (916)
Q Consensus 29 ~dg~I~lwd~~~~~--~~~~~~~h~~~V~~i~fsp~-----~~~l~s~~~dg~I~vWd~~~~~~~~~l-~~h~~~v~~v~ 100 (916)
....+.+|+.-+.. .+..+ ..+.|.|. -.+|+.||..|...+|...+.+....+ ..|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 44567778765543 22222 45666663 347999999999999999866544333 33444333222
Q ss_pred EcCC-CCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccce
Q 002490 101 FHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (916)
Q Consensus 101 fs~~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 179 (916)
=.-+ ...+..++.|.++++.++..+.........+-.+.++.++++++++++.+....|..|.+.......
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-------- 194 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-------- 194 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee--------
Confidence 1112 2246778889999999886544333222112237889999999999999999999999987633221
Q ss_pred eeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce---eeeeeecCCCCeEEEEE
Q 002490 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW---EVDTLRGHMNNVSCVMF 256 (916)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~l~~ 256 (916)
.+.........-.+.+|+.....+++++.||++.|||++..... ...+-+.|.+.+..+.|
T Consensus 195 ----------------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F 258 (344)
T KOG4532|consen 195 ----------------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF 258 (344)
T ss_pred ----------------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe
Confidence 22233344455678899999999999999999999999875431 12334568899999999
Q ss_pred ccCCC--EEEEEeCCCcEEEEECCCCceeEEeeccCC
Q 002490 257 HAKQD--IIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (916)
Q Consensus 257 sp~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 291 (916)
++.|. +|+..-.-+.+.+.|++++...+.+....+
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 98664 555555567899999999887777665444
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.04 E-value=2.6e-07 Score=102.29 Aligned_cols=263 Identities=8% Similarity=0.006 Sum_probs=156.5
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v 99 (916)
.+..+++++.+|.|.-+|..+|+.+.+++.......... .++..++.++.++.+..+|..+|+.+...... +.+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC
Confidence 356788888899999999999999887764433222222 24667888888999999999999988766532 222221
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceE-----EEEEecCCCEEEEEECCCeEEEEECCCCcceeccC
Q 002490 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM-----CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (916)
Q Consensus 100 ~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~-----~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 174 (916)
-.. .+..++.++.++.+..||.++|+.+.........+. +.... +..++.++.++.+..+|..+++......
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 111 234677778899999999999998877654322111 11122 3467788888999999998876543221
Q ss_pred Cccce---------eec----cccccccc-cccceEEEEEeccCCCeeE-E------EEcCCCCEEEEEECCCcEEEEEC
Q 002490 175 ADDIL---------RLS----QMNTDLFG-GVDAVVKYVLEGHDRGVNW-A------AFHPTLPLIVSGADDRQVKLWRM 233 (916)
Q Consensus 175 ~~~~~---------~~~----~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~------~~~p~~~~l~~~~~dg~v~iwd~ 233 (916)
..... ... ..+..++. ..+. ..+.+....+.+.+ . .....+..+++++.+|.+..+|.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-RVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCC-EEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEEC
Confidence 10000 000 00001110 0011 01111111111111 0 11123567778888999999999
Q ss_pred CCCcceeeeeeecC-CCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcE
Q 002490 234 NETKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (916)
Q Consensus 234 ~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i 293 (916)
.+++. +...... .....+... .+..+++++.+|.|+++|..+++.+..++.+...+
T Consensus 297 ~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 297 RSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred CCCcE--EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 88764 2222111 111222222 46688999999999999999999988877655443
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2e-06 Score=105.60 Aligned_cols=260 Identities=12% Similarity=0.176 Sum_probs=157.8
Q ss_pred EEEEEecC-CCEEEEEECCCeEEEEECCCCeeEEEEec--------------CCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 002490 55 RGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRCLFTLLG--------------HLDYIRTVQFHHEYPWIVSASD-DQTIR 118 (916)
Q Consensus 55 ~~i~fsp~-~~~l~s~~~dg~I~vWd~~~~~~~~~l~~--------------h~~~v~~v~fs~~~~~l~s~s~-dg~I~ 118 (916)
..+++++. +.++++-+.++.|.+||.. ++.+..+.+ +-.....+++.+++..|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 6677777888999999976 444444332 1124578999998886666544 56899
Q ss_pred EEeCCCCeEEEEEeCC-----------------CCceEEEEEec-CCCEEEEEECCCeEEEEECCCCcceeccCCcccee
Q 002490 119 IWNWQSRTCISVLTGH-----------------NHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180 (916)
Q Consensus 119 iwd~~~~~~~~~~~~h-----------------~~~v~~l~~~p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 180 (916)
++|..++. +.++.+- -.....++++| ++..+++.+.++.|++||..++............
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~- 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER- 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-
Confidence 99987765 3333210 12346799999 5556677778899999998775432211100000
Q ss_pred eccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEEECCCcEEEEECCCCcceeee-----------eee---
Q 002490 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD-----------TLR--- 245 (916)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~v~iwd~~~~~~~~~~-----------~~~--- 245 (916)
...+. . .....-.....++++|++. ++++-+.++.|++||+.++....+. .+.
T Consensus 728 ------~~~g~----~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 728 ------NLNGS----S--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred ------cCCCC----c--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 00000 0 0001123456799999998 4555566789999999876531110 000
Q ss_pred -----cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc-------------CCcEEEEEEecCCCeEEE
Q 002490 246 -----GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-------------HDRFWILASHPEMNLLAA 307 (916)
Q Consensus 246 -----~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~i~~l~~sp~~~~la~ 307 (916)
.......+++++++|+++++.+.++.|++||..++......... -.....++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 01123468999999999899899999999999876654322100 013345555555554443
Q ss_pred EeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 308 GHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 308 g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
.+ .++.|++||+.+++......
T Consensus 876 Dt--------------------------~Nn~Irvid~~~~~~~~~~~ 897 (1057)
T PLN02919 876 DT--------------------------NNSLIRYLDLNKGEAAEILT 897 (1057)
T ss_pred EC--------------------------CCCEEEEEECCCCccceeEe
Confidence 33 56778899988765433333
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.1e-09 Score=114.11 Aligned_cols=215 Identities=16% Similarity=0.271 Sum_probs=154.8
Q ss_pred EEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECC-------CCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCc
Q 002490 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT 116 (916)
Q Consensus 44 ~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~-------~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~ 116 (916)
+..|.+|...|+.++--.+.+-+++++.|.+|++|+++ +..|.+++..|..+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45677999999999887788889999999999999986 345889999999999999999998888765 688
Q ss_pred EEEEeCCCCeEEEEEe-----CCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCCcceeccCCccceeeccccccccc
Q 002490 117 IRIWNWQSRTCISVLT-----GHNHYVMCASFHPKEDL-VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (916)
Q Consensus 117 I~iwd~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (916)
|.+||.--++++..+. +..+.|.|+.-- +... ++.++...+|+++|.+..+-...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E------------------ 866 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCE------------------ 866 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceee------------------
Confidence 9999988777765432 222334443221 2333 44447889999999887543221
Q ss_pred cccceEEE-EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCC
Q 002490 191 GVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (916)
Q Consensus 191 ~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d 269 (916)
.+. ...+...-+.+++..|.|+.++.+-.+|+|.+.|.++++. +..++........++ .|..+.++....|
T Consensus 867 -----~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqla-apsdq~L~~sald 938 (1034)
T KOG4190|consen 867 -----LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLA-APSDQALAQSALD 938 (1034)
T ss_pred -----EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhc-CchhHHHHhhccc
Confidence 111 1123345678999999999999999999999999999986 555554433333333 3556677777788
Q ss_pred CcEEE-EECCCCceeEEee
Q 002490 270 KSIRV-WDVTKRTGVQTFR 287 (916)
Q Consensus 270 g~i~v-wd~~~~~~~~~~~ 287 (916)
.++.+ |...++....+.+
T Consensus 939 HslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 939 HSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred ceeEeeehhcCCeeeeccC
Confidence 88888 8766655444433
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.6e-08 Score=98.62 Aligned_cols=255 Identities=18% Similarity=0.319 Sum_probs=168.2
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----ceEEEecccc------------cCEEEEEEecCCC--EEEEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----TLIDRFDEHD------------GPVRGVHFHKSQP--LFVSG 69 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~-----~~~~~~~~h~------------~~V~~i~fsp~~~--~l~s~ 69 (916)
...|+++.|...|.||++|...|.|.++.-... +....|++|+ ..|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 467999999999999999999999999974432 2233455554 3588888876543 46667
Q ss_pred ECCCeEEEEECCCCe-------------------e------------------E-----EEE-ecCCCCEEEEEEcCCCC
Q 002490 70 GDDYKIKVWNYKMHR-------------------C------------------L-----FTL-LGHLDYIRTVQFHHEYP 106 (916)
Q Consensus 70 ~~dg~I~vWd~~~~~-------------------~------------------~-----~~l-~~h~~~v~~v~fs~~~~ 106 (916)
+.|.+|++|.+.... . + +.. ..|..-|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999874320 0 0 001 24667788999999988
Q ss_pred EEEEEECCCcEEEEeCCCCe---EEEEEeCCC-----CceEEEEEecCCC-EEEEEECCCeEEEEECCCCcceeccCCcc
Q 002490 107 WIVSASDDQTIRIWNWQSRT---CISVLTGHN-----HYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADD 177 (916)
Q Consensus 107 ~l~s~s~dg~I~iwd~~~~~---~~~~~~~h~-----~~v~~l~~~p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 177 (916)
.++++. |-.|.+|++.-.. .+.-++.|+ .-|++..|+|... .+.-.+..|+|++-|++....-.... .
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~--k 262 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK--K 262 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--h
Confidence 877764 6789999986322 122334443 3478999999754 66667778999999998532110000 0
Q ss_pred ceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC---------
Q 002490 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM--------- 248 (916)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------- 248 (916)
.+.. ..+..-...+.+-.+.|..+.|+++|+++++-+ --+|++||.+..+. ++.+.+-|.
T Consensus 263 lfe~---------~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~-pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 263 LFEL---------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN-PIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhh---------ccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC-CceeechHHHHHHHHHhh
Confidence 0000 001111123334456788999999999988755 56899999987664 355554432
Q ss_pred ---CCe---EEEEEccCCCEEEEEeCCCcEEEEEC
Q 002490 249 ---NNV---SCVMFHAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 249 ---~~v---~~l~~sp~~~~l~s~~~dg~i~vwd~ 277 (916)
..| ..+.|+.+.+.+++|+.....-++-.
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 24678888889999988877777753
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=1.4e-07 Score=90.50 Aligned_cols=244 Identities=12% Similarity=0.082 Sum_probs=158.7
Q ss_pred EEEEEeC-----CCCEEEEEecCCeEEEEECCCCce-EEEecccccCEEEEEEecC-CCEEEEEECCCeEEEEECCCCee
Q 002490 13 KGLSFHS-----KRPWILASLHSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRC 85 (916)
Q Consensus 13 ~~l~~sp-----~~~~la~~~~dg~I~lwd~~~~~~-~~~~~~h~~~V~~i~fsp~-~~~l~s~~~dg~I~vWd~~~~~~ 85 (916)
+.+.|-| ...+||.|+..|...+|...+.+. ......|...|+-+.=..+ .-.+..++.|.++++.+++.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3456666 346899999999999999886543 3333444443322211111 12355677888888888875443
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eE-EE-EEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TC-IS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 86 ~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~-~~-~~-~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
-+.+.-..-.+.++.++++++++++.++...|..|.+... .. +. ........-.+..|+.....+++++.||++.||
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 3333222223888999999999999999999999988643 22 22 222233344678899888899999999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC--EEEEEECCCcEEEEECCCCccee
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
|++......... ......|.+.+..+.|+|.|. +|+..-.-+.+.+.|+++.+..+
T Consensus 231 DVR~~~tpm~~~----------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 231 DVRNMATPMAEI----------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred Eecccccchhhh----------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 998865432111 113345889999999998765 45555556789999999887532
Q ss_pred eeee-----ecCCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 241 VDTL-----RGHMN-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 241 ~~~~-----~~~~~-~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
+... ..|.. .|....|+.++..+.+.+++ .+.=|++.+
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 2221 22333 37777777777766666554 344555543
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.3e-09 Score=111.68 Aligned_cols=278 Identities=13% Similarity=0.189 Sum_probs=179.5
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC-------CceEEEecccccCEEEEEEecCCCEEEEEECCCe
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM-------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~-------~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~ 74 (916)
+..|.||+..|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|+.+|.++.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 567899999999998877888899999999999999863 23566788999999999999998888765 789
Q ss_pred EEEEECCCCeeEEEEe--cCCCCEEEEEEcC--CCC-EEEEEECCCcEEEEeCCCCeEEEEEe-----CCCCceEEEEEe
Q 002490 75 IKVWNYKMHRCLFTLL--GHLDYIRTVQFHH--EYP-WIVSASDDQTIRIWNWQSRTCISVLT-----GHNHYVMCASFH 144 (916)
Q Consensus 75 I~vWd~~~~~~~~~l~--~h~~~v~~v~fs~--~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~~ 144 (916)
|.+||.--++.+..+. ...+.+..+..-+ +.. .++.++...+|+++|.++..-...++ +.+..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999988777766432 1122223333323 333 34445788999999998876655443 456678999999
Q ss_pred cCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC
Q 002490 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (916)
Q Consensus 145 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 224 (916)
|.|+.++.+-.+|.|.+.|.++++..... ...+.....++ .|..+.++....
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw---------------------------rpmecdllqla-apsdq~L~~sal 937 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSW---------------------------RPMECDLLQLA-APSDQALAQSAL 937 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccC---------------------------Ccccchhhhhc-CchhHHHHhhcc
Confidence 99999999999999999999987643211 11111111111 244455666666
Q ss_pred CCcEEE-EECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeEEee--ccCCcEEEEE
Q 002490 225 DRQVKL-WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFR--REHDRFWILA 297 (916)
Q Consensus 225 dg~v~i-wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~--~~~~~i~~l~ 297 (916)
|.++.+ |...++.. ..+.+....+..-+ ..-|..+++......+.+|.-... ..+..++ ...+..++++
T Consensus 938 dHslaVnWhaldgim--h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala 1013 (1034)
T KOG4190|consen 938 DHSLAVNWHALDGIM--HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALA 1013 (1034)
T ss_pred cceeEeeehhcCCee--eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceee
Confidence 777777 76655543 22222221211111 113455666666666777742110 1111121 1234567777
Q ss_pred EecCCCeEEEEeCCCc
Q 002490 298 SHPEMNLLAAGHDSGM 313 (916)
Q Consensus 298 ~sp~~~~la~g~~~~~ 313 (916)
.-|-..-+.+|...|.
T Consensus 1014 ~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 1014 PLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred eccccchhhccCCCCc
Confidence 7776666666665543
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=1.1e-06 Score=86.24 Aligned_cols=233 Identities=13% Similarity=0.164 Sum_probs=142.2
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCC--ceEEEecc---cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 15 LSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRFDE---HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 15 l~~sp~~~~la~~~~dg~I~lwd~~~~--~~~~~~~~---h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
++.+++|+.||+- .|..|.|-..++. ..+.+.+. ....=+-++||||+.+||.+...|+|+++|+.. ..++.+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5778899988876 6778888776543 33333332 333468899999999999999999999999874 444444
Q ss_pred ecC-------CCCEEEEEEcCCC------CEEEEEECCCcEEEEeCCC-----CeEEEEEe---CCCCceEEEEEecCCC
Q 002490 90 LGH-------LDYIRTVQFHHEY------PWIVSASDDQTIRIWNWQS-----RTCISVLT---GHNHYVMCASFHPKED 148 (916)
Q Consensus 90 ~~h-------~~~v~~v~fs~~~------~~l~s~s~dg~I~iwd~~~-----~~~~~~~~---~h~~~v~~l~~~p~~~ 148 (916)
... ...|..+.|.+-. ..|++-..+|.++-|-+.. .+...++. .+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 321 2467777776432 1456666778777776532 23333332 2467899999999989
Q ss_pred EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCE--EEEEECCC
Q 002490 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL--IVSGADDR 226 (916)
Q Consensus 149 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~~dg 226 (916)
+|++|+.... +.+..+ ....++++-..-.+.++ .++...|+
T Consensus 161 LLlVgG~~~~------~~~~s~-------------------------------a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGMSK-------------------------------ASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEeccCCC------CCcccc-------------------------------ccccCceEEEEcCCCCcEEEccccCcc
Confidence 8888775432 000000 01112222111111111 11111111
Q ss_pred ------cEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 002490 227 ------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (916)
Q Consensus 227 ------~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 288 (916)
+-.+|++-+.+. ..........|..+..||||++|++...+|.|.+|++.+-........
T Consensus 204 ~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccccccceeeccceee--eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 123444443321 111122456789999999999999999999999999998776665543
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.9e-07 Score=100.72 Aligned_cols=213 Identities=9% Similarity=0.062 Sum_probs=129.8
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCE-EEEEeCC---CcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDI-IVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
..|.+-|...... ..+... +......|+|+|+. ++..+.+ ..|.++|+.+++...... ..+......|+||
T Consensus 169 ~~l~~~d~dg~~~---~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTYQ---KVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCce---eEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence 3455555544432 222222 36778999999984 6544433 469999998876554433 4455567789999
Q ss_pred CCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEE
Q 002490 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (916)
Q Consensus 302 ~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~ll 381 (916)
|+.++...... .+..|.++++.+++..++..... ......|+|||+.++
T Consensus 244 G~~la~~~~~~-----------------------g~~~Iy~~dl~~g~~~~LT~~~~--------~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 244 GSKLLLTMAPK-----------------------GQPDIYLYDTNTKTLTQITNYPG--------IDVNGNFVEDDKRIV 292 (419)
T ss_pred CCEEEEEEccC-----------------------CCcEEEEEECCCCcEEEcccCCC--------ccCccEECCCCCEEE
Confidence 98887654311 23567888887776554432221 223457999999999
Q ss_pred EEEcCCCCEEEEEEeeCC--CCCCCccccccccCceeEEEEEeCCcEEEEEcCC---------CEEEEEccCCceEEEee
Q 002490 382 ICSDVDGGSYELYVIPKD--SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS---------NQVLVKNLKNEVVKKSI 450 (916)
Q Consensus 382 v~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d---------~~I~iwdl~~~~~~~i~ 450 (916)
+.++. .+.-.||.++-. ....+ ...+. ....|+|||++++..... ..|.+.|+.+...+.+.
T Consensus 293 F~Sdr-~g~~~Iy~~dl~~g~~~rl--t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 293 FVSDR-LGYPNIFMKKLNSGSVEQV--VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred EEECC-CCCceEEEEECCCCCeEeC--ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence 88863 345555555433 22121 11111 124899999988877543 36788888876666666
Q ss_pred CCCceeEEEEeCCceEEEE---E--CCEEEEEEcCC
Q 002490 451 LPIAADAIFYAGTGNLLCR---A--EDRVVIFDLQQ 481 (916)
Q Consensus 451 ~~~~v~~l~~s~~g~~l~~---~--d~~v~l~d~~~ 481 (916)
.........|+|||+.++. . ...+.++++..
T Consensus 366 ~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 366 ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 5444446789999887765 1 22455666644
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=8e-07 Score=98.23 Aligned_cols=211 Identities=12% Similarity=0.057 Sum_probs=133.5
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCE-EEEEEC---CCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCC
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPL-FVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP 106 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~-l~s~~~---dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~ 106 (916)
..|.+-|+. |...+.+... +.+..-.|+|+|+. ++..+. +..|.++|+.+++..... ...+......|+|||+
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCC-CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 456666653 3334444333 37889999999984 554333 457999999887654433 3455667788999998
Q ss_pred EEEEE-ECC--CcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECC-C--eEEEEECCCCcceeccCCcccee
Q 002490 107 WIVSA-SDD--QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-Q--TVRVWDIGALRKKTVSPADDILR 180 (916)
Q Consensus 107 ~l~s~-s~d--g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~~ 180 (916)
.++.. +.+ ..|.++|+.+++. ..++.+........|+|||+.|+..+.. + .|.+.|+.+++....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-------- 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-------- 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--------
Confidence 76644 333 4688889877764 3444444434556899999977776632 2 577777766543221
Q ss_pred eccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---------CcEEEEECCCCcceeeeeeecCCCCe
Q 002490 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---------RQVKLWRMNETKAWEVDTLRGHMNNV 251 (916)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v 251 (916)
...+. ....|+|+|+.|+..+.. ..|.+.|+.++.. ..+... ...
T Consensus 317 ------------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~-~~~ 370 (419)
T PRK04043 317 ------------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLTAN-GVN 370 (419)
T ss_pred ------------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECCCC-CCc
Confidence 11111 124899999988877654 2678888887764 223222 223
Q ss_pred EEEEEccCCCEEEEEeCCC---cEEEEECCC
Q 002490 252 SCVMFHAKQDIIVSNSEDK---SIRVWDVTK 279 (916)
Q Consensus 252 ~~l~~sp~~~~l~s~~~dg---~i~vwd~~~ 279 (916)
....|+|||+.|+..+.++ .+.+.++..
T Consensus 371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3578999999887765432 356666643
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-06 Score=96.90 Aligned_cols=187 Identities=14% Similarity=0.162 Sum_probs=121.7
Q ss_pred CceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC
Q 002490 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (916)
Q Consensus 136 ~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 215 (916)
..+.|++++ ++.++.|+-+|.|++++....-. ....|... ..+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-----------------------------~~~~~s~~------~~~ 82 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-----------------------------TNFDHSSS------ILE 82 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCccc-----------------------------cccccccc------ccC
Confidence 446667776 57999999999999999866321 11122222 567
Q ss_pred CCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccC-----CCEEEEEeCCCcEEEEECCCC--ceeEEeec
Q 002490 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QDIIVSNSEDKSIRVWDVTKR--TGVQTFRR 288 (916)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~ 288 (916)
|.++++|+.||+|.|-.+-+.+. ..+. ....++.+++++|+ .+.+++||.-| +.++.-+-. +....+..
T Consensus 83 Gey~asCS~DGkv~I~sl~~~~~--~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTDDE--ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred CceEEEecCCCcEEEeeccCCcc--ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 89999999999999999988875 3222 23468899999997 56899999888 777653211 11113445
Q ss_pred cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCC
Q 002490 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (916)
Q Consensus 289 ~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (916)
..++|.++.| .|+++|.+.+.|+.+|+.. +++.+..++.+...... ...+
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~Gv~vyd~~---------------------------~~~~l~~i~~p~~~~R~-e~fp 208 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDGVKVYDTP---------------------------TRQRLTNIPPPSQSVRP-ELFP 208 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCCcEEEecc---------------------------ccceeeccCCCCCCCCc-ccCC
Confidence 5678889888 5889998888887655544 33333222222111100 1245
Q ss_pred eEEEEcCCCCEEEEEEcCCCCEEEEEEee
Q 002490 369 RTLSYSPTENAVLICSDVDGGSYELYVIP 397 (916)
Q Consensus 369 ~~l~~sp~~~~llv~~~~~~g~i~i~~~~ 397 (916)
..+.|.++.+.++ .-+ .+|.|..+.
T Consensus 209 phl~W~~~~~LVI-GW~---d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQDEDRLVI-GWG---DSVKICSIK 233 (846)
T ss_pred CceEecCCCeEEE-ecC---CeEEEEEEe
Confidence 5688888766433 333 488888886
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1e-08 Score=110.79 Aligned_cols=262 Identities=18% Similarity=0.241 Sum_probs=176.2
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEeccccc--CEEEEEEecCC--CEEEEEECCCeEEEEECC---
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRM-GTLIDRFDEHDG--PVRGVHFHKSQ--PLFVSGGDDYKIKVWNYK--- 81 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~-~~~~~~~~~h~~--~V~~i~fsp~~--~~l~s~~~dg~I~vWd~~--- 81 (916)
+++.++..+|.|+-+|.++.-| +.+-|+.. ++..+-+. |.. .|-.+.|+|.. ++-++......-.+|++.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 5778899999999999988777 55566643 33333332 332 36677887643 455555555677899986
Q ss_pred CCeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCC-eEEEEEeCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 82 MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 82 ~~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
+...-+.+.+|...|+.+.|+|..+ .+++++.|-.+..||+++. .++.....-...-..+.|+-....+.+.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3455567889999999999999876 7899999999999999864 4555555445556778998766666666777889
Q ss_pred EEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-CCEEEEEECCCcEEEEECCCCcc
Q 002490 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 160 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
++||.+.+.. +...+.+|...|+.+.|..- ...+.+.+.||+|++||......
T Consensus 183 ~vwd~r~gs~--------------------------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 183 FVWDLRKGST--------------------------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred EEEeccCCCc--------------------------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 9999987443 44577778888888888752 34678889999999999876543
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEe--CCCcEEE---------EECCC-CceeEEeeccCCcEEEEEEec
Q 002490 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNS--EDKSIRV---------WDVTK-RTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 239 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~~--~dg~i~v---------wd~~~-~~~~~~~~~~~~~i~~l~~sp 300 (916)
. .........+|..-.+.|-|.-.+.-- .+..+.+ |+..+ .+++.+|.+|.+.|....|..
T Consensus 237 e-~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 237 E-SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred c-cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 2 222223345666666767544222211 1112333 33322 356777777777766655544
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=1.8e-08 Score=102.35 Aligned_cols=160 Identities=22% Similarity=0.325 Sum_probs=118.2
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCc----eEEEecc--cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFDE--HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~----~~~~~~~--h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
.+..+..+|.+++||++..+....++++.... ++..+.. -...++.+..+.........++.+.+.+|+...+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556778999999999888887777775443 2232221 22233333333333334445677888999887754
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-eCCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd 163 (916)
+. .+.||-.-++.++|+||++.|+++..|..|+|-....--.+..+ -||...|..++..++ ..|+++|.|++|++||
T Consensus 144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 44 45689999999999999999999999999999887765555554 479999999999864 5699999999999999
Q ss_pred CCCCcceec
Q 002490 164 IGALRKKTV 172 (916)
Q Consensus 164 ~~~~~~~~~ 172 (916)
+.+++....
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 999887643
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=8.3e-09 Score=111.53 Aligned_cols=241 Identities=17% Similarity=0.324 Sum_probs=166.6
Q ss_pred EEEEEEeC--CCCEEEEEecCCeEEEEECCC---CceEEEecccccCEEEEEEecCCC-EEEEEECCCeEEEEECCCC-e
Q 002490 12 VKGLSFHS--KRPWILASLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMH-R 84 (916)
Q Consensus 12 V~~l~~sp--~~~~la~~~~dg~I~lwd~~~---~~~~~~~~~h~~~V~~i~fsp~~~-~l~s~~~dg~I~vWd~~~~-~ 84 (916)
|-.+.||| ..++-++...+..-.+|++.. ..+...+.+|...|+.+.|+|+.+ .+++++.|..+..||+.+. +
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 44566765 456666666777788999853 344556789999999999999765 6889999999999999864 4
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEEeCCCCceEEEEEecC-CCEEEEEECCCeEEEE
Q 002490 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQTVRVW 162 (916)
Q Consensus 85 ~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~v~vw 162 (916)
.+.....-...-..|.|+-..+.+.+.+....|++||.+. +.++..+++|...|..+.|+.- ...+.+.+.|++|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 4455544455667899998777677777788999999985 4677888999999999998753 3478899999999999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCE--EEEEECCCcEEEE---------
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL--IVSGADDRQVKLW--------- 231 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~~dg~v~iw--------- 231 (916)
|......... .......+|....+.|-|.- +.---.+..+.++
T Consensus 230 ~y~kSt~e~~--------------------------~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~ 283 (1081)
T KOG0309|consen 230 DYSKSTTESK--------------------------RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW 283 (1081)
T ss_pred cccccccccc--------------------------eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhh
Confidence 9865332111 01112334444455553321 1111112233333
Q ss_pred ECCCCcceeeeeeecCCCCeEEEEEccCCC----------EEEEEeCCCcEEEEECCC
Q 002490 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQD----------IIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~----------~l~s~~~dg~i~vwd~~~ 279 (916)
+..+.. .++.++.||...|....|-..+. .|++-+.|.++++|-+.+
T Consensus 284 n~~~~~-~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 284 NVFDLN-TPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCC-cceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332222 25889999999988777755332 689999999999998764
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=6.3e-06 Score=85.13 Aligned_cols=224 Identities=12% Similarity=0.069 Sum_probs=144.9
Q ss_pred EEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEe-cCCCEEEEEECCCeEEEEECCCCeeEEEEec
Q 002490 14 GLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH-KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (916)
Q Consensus 14 ~l~~sp-~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fs-p~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~ 91 (916)
+++|.+ ++.++++-...+.|..|+..+++... +.... ..++++. +++. |+.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeec
Confidence 678998 66666666678999999987775433 32222 6778888 6655 4445544 455669988865443332
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEECC--------CcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEE-EEECCC
Q 002490 92 -----HLDYIRTVQFHHEYPWIVSASDD--------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV-SASLDQ 157 (916)
Q Consensus 92 -----h~~~v~~v~fs~~~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~-s~s~dg 157 (916)
.......+++.++|++.++.... |.|..++.. ++...... .-.....++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34567889999999977766544 457777776 55444443 345678999999998665 566778
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
.|..+++........ .......+....+..-.+++..+|++.++....+.|.+++.. ++
T Consensus 157 ~i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 157 RIWRFDLDADGGELS--------------------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEEEEETTTCCEE--------------------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred eeEEEecccccccee--------------------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 899998864322100 000111222222347789999999988888889999999988 55
Q ss_pred ceeeeeeecCCCCeEEEEEc-cCCCEEEEEe
Q 002490 238 AWEVDTLRGHMNNVSCVMFH-AKQDIIVSNS 267 (916)
Q Consensus 238 ~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~~ 267 (916)
. +..+......+++++|. |+.+.|+..+
T Consensus 216 ~--~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 L--LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E--EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred E--EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 5 44444444589999994 6666555543
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=8.8e-06 Score=84.07 Aligned_cols=218 Identities=12% Similarity=0.007 Sum_probs=145.5
Q ss_pred EEEEec-CCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEc-CCCCEEEEEECCCcEEEEeCCCCeEEEEEeC
Q 002490 56 GVHFHK-SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (916)
Q Consensus 56 ~i~fsp-~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs-~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 133 (916)
++.|.+ ++.++++--..+.|..|+..+++... +.. .. ...+.+. +++ .++.+...+ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 77777777778999999998876543 221 22 6777787 565 556556544 56669998865544432
Q ss_pred -----CCCceEEEEEecCCCEEEEEECC--------CeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEE
Q 002490 134 -----HNHYVMCASFHPKEDLVVSASLD--------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (916)
Q Consensus 134 -----h~~~v~~l~~~p~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (916)
.......+++.|+|++.++.... |.|..++.. ++. ....
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---------------------------~~~~ 130 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---------------------------TVVA 130 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---------------------------EEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE---------------------------EEEe
Confidence 34567899999999977766543 446666655 221 1122
Q ss_pred eccCCCeeEEEEcCCCCEEE-EEECCCcEEEEECCCCcc--eeee---eeecCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002490 201 EGHDRGVNWAAFHPTLPLIV-SGADDRQVKLWRMNETKA--WEVD---TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~-~~~~dg~v~iwd~~~~~~--~~~~---~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~v 274 (916)
..-...+.++|+|+++.|+ +-+..+.|..+++..... .... .+....+....+++..+|++.++....+.|.+
T Consensus 131 -~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 131 -DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp -EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred -cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 2245568999999998765 555678888888864332 1112 22222234788999999998888888899999
Q ss_pred EECCCCceeEEeeccCCcEEEEEEe-cCCCeEEEE
Q 002490 275 WDVTKRTGVQTFRREHDRFWILASH-PEMNLLAAG 308 (916)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~l~~s-p~~~~la~g 308 (916)
++.. ++.+..+......+++++|. ++.+.|.+.
T Consensus 210 ~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 9987 88888888776789999994 565655543
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.2e-09 Score=117.95 Aligned_cols=259 Identities=14% Similarity=0.241 Sum_probs=177.3
Q ss_pred cccccccCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECC--CeEEEEE
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWN 79 (916)
Q Consensus 2 l~~l~~h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~d--g~I~vWd 79 (916)
.+.|..|....+|++|+-+.+.|++|+..|.|+++++.+|........|..+|+.+.=+.+|..+.+.+.- -...+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 35688899999999999999999999999999999999999999999999999999999999887766543 3578999
Q ss_pred CCC-CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-eC---CCCceEEEEEecCCCEEEEEE
Q 002490 80 YKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TG---HNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 80 ~~~-~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~---h~~~v~~l~~~p~~~~l~s~s 154 (916)
+.+ +...+++. .-.++.|+.....-+.|+......+||++++..+.++ .+ .+-.-.++.|+|+.++++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 873 44455544 3467888877655555555567899999998876653 21 222236788999988776
Q ss_pred CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECC
Q 002490 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (916)
Q Consensus 155 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~ 234 (916)
+|| .+||.+..+...... ... .--.-.|||.|..++.-+. |||++
T Consensus 1247 ndG--vLWDvR~~~aIh~FD---------------------------~ft-~~~~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFD---------------------------QFT-DYGGGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred eCc--eeeeeccHHHHhhhh---------------------------hhe-ecccccccCCCceEEeech-----hhhhH
Confidence 466 479998764433211 000 0112369999999988764 89999
Q ss_pred CCcceeeeeeecCCCCeEEEEEccCCCEEEEEe-----C------------CCcEEEEECCCCceeEEeeccCCcEEEEE
Q 002490 235 ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-----E------------DKSIRVWDVTKRTGVQTFRREHDRFWILA 297 (916)
Q Consensus 235 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~-----~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 297 (916)
+.+. +...+.-. -..+.|+..|+.++..- . -...|-++......+.++... ..+..++
T Consensus 1292 TF~l--Lh~VP~Ld--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlc 1366 (1516)
T KOG1832|consen 1292 TFKL--LHSVPSLD--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLC 1366 (1516)
T ss_pred HHHH--HhcCcccc--ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhh
Confidence 8876 44443322 24577887777655432 0 012344555555555555432 2345566
Q ss_pred EecCCCeEEE
Q 002490 298 SHPEMNLLAA 307 (916)
Q Consensus 298 ~sp~~~~la~ 307 (916)
.+|...++++
T Consensus 1367 t~~~D~~l~v 1376 (1516)
T KOG1832|consen 1367 TEPTDSFLGV 1376 (1516)
T ss_pred cCCccceEEE
Confidence 6666666554
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=3.9e-09 Score=116.07 Aligned_cols=282 Identities=15% Similarity=0.177 Sum_probs=187.0
Q ss_pred ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECC-C-cEEE
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q-TIRI 119 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d-g-~I~i 119 (916)
+..++|..|+...+|++|+-+.+.|+.|+..|.|+++++.+|.......+|...|+.+.-+.+|..+++.+.- . ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 4456777899999999999999999999999999999999999999999999999999999999866655433 3 5678
Q ss_pred EeCCC-CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 120 WNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 120 wd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
|+..+ +....++.+ -.++.|+.....-+.|+.-....+||+.+.......-.
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----------------------- 1224 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----------------------- 1224 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC-----------------------
Confidence 99863 444444442 35678876554445555556789999998765432110
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECC
Q 002490 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 199 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
-..+....-+++.|+|+..+++ .|| .+||.+.... +..+...+..+ .-.|||.|.-++..++ |||++
T Consensus 1225 ~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a--Ih~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA--IHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred cchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH--Hhhhhhheecc-cccccCCCceEEeech-----hhhhH
Confidence 0011122337889999988766 366 5899988765 55554444322 3479999999999887 99999
Q ss_pred CCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecC---CcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLER---ERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 279 ~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~---~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
+.+.++....-. -..+.|+..|+.+.+.-.-.-.+-++.. ..|.| ...+-++...-..+..+.
T Consensus 1292 TF~lLh~VP~Ld--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~f------------SSFRTf~a~dYs~iaTi~ 1357 (1516)
T KOG1832|consen 1292 TFKLLHSVPSLD--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLF------------SSFRTFDAIDYSDIATIP 1357 (1516)
T ss_pred HHHHHhcCcccc--ceEEEeccCccchhhhhhhhhhhhhhcccccccchh------------hhhccccccccccceeee
Confidence 988777654322 2567788777766543210000000000 11111 223444444444555555
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEc
Q 002490 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~sp~~~~llv~~~ 385 (916)
.++ .+..++-+|...++.+...
T Consensus 1358 v~R--------~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1358 VDR--------CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred ccc--------chhhhhcCCccceEEEEec
Confidence 544 6667777777777666543
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=9.9e-06 Score=89.74 Aligned_cols=263 Identities=10% Similarity=0.026 Sum_probs=154.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEE
Q 002490 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (916)
Q Consensus 63 ~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~ 142 (916)
+..+++++.++.|..+|..+|+.+............... ++..++.++.++.+..+|..+|+.+...... ..+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 557888888999999999999988776543332222222 4567888889999999999999988766532 2222211
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEE
Q 002490 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222 (916)
Q Consensus 143 ~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 222 (916)
.. .+..++.++.++.+..||.++++......... ..........+ ... +..++.+
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~~~~~sp----~~~--~~~v~~~ 196 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT------------------PALTLRGSASP----VIA--DGGVLVG 196 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC------------------CceeecCCCCC----EEE--CCEEEEE
Confidence 11 24577778889999999998876543221100 00000000111 111 2367777
Q ss_pred ECCCcEEEEECCCCcceeeeeee-cCC-CC------e-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcE
Q 002490 223 ADDRQVKLWRMNETKAWEVDTLR-GHM-NN------V-SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (916)
Q Consensus 223 ~~dg~v~iwd~~~~~~~~~~~~~-~~~-~~------v-~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i 293 (916)
..++.+..+|..+++..-..... ... .. + .+..+ .+..+++++.+|.++.||..+++.+....... .
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~ 272 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--Y 272 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--c
Confidence 78899999998887641111111 000 00 0 11112 35578888889999999999998776554211 1
Q ss_pred EEEE--------EecCCCeEEEEeCCCceEEEecC-Cc---ceEEecCCEEEEE-eCCeEEEEEccCCceeeeEEec
Q 002490 294 WILA--------SHPEMNLLAAGHDSGMIVFKLER-ER---PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIR 357 (916)
Q Consensus 294 ~~l~--------~sp~~~~la~g~~~~~~v~~~~~-~~---~~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 357 (916)
.... .+.++.+.+.-...|-.+|+... .. ......++.+++. .++.+.++|..+++.+....+.
T Consensus 273 ~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 273 QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 1111 12233333333334445555422 11 1223456777777 8999999999999887766543
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.77 E-value=0.00013 Score=79.14 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=143.0
Q ss_pred ccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceEEEeeCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEE
Q 002490 409 DAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLG 486 (916)
Q Consensus 409 ~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~ 486 (916)
-.....+.+.+++|+...++.|..||+|.+||...+.....+....++.++|.|+|.++++ ..|.+.+||+.-.....
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~ 335 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKM 335 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccce
Confidence 3455668888888888888888888888888888666665666557788888888888776 45788888865443322
Q ss_pred EEEc---CCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEeeeeeEEEEEEecCCeEEEEcCCceeEEccCCceEEE
Q 002490 487 DLQT---PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGII 563 (916)
Q Consensus 487 ~~~~---~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~~~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i 563 (916)
++-. .+-..+.+| .++ ..+..+..+.|.+.+.....+... . -..+...+
T Consensus 336 qLlsEd~~P~~~L~Ls---~yf---------------------~~~~~L~~iqW~~~~~~~~~~~~~---~-~~~~~L~l 387 (545)
T PF11768_consen 336 QLLSEDATPKSTLQLS---KYF---------------------RVSSSLVHIQWAPAPQLSSQGEFY---A-DTYDLLLL 387 (545)
T ss_pred eeccccCCCccEEeee---hhc---------------------cCcchhheeEeccCCCccccCCCc---C-CccceEEE
Confidence 2221 111122222 111 112344555666433322111100 0 00011111
Q ss_pred EEecceEEEEEEeCCEEEEEeCCCCeEEEEeChhHHHHHHHHhcccHHHHHhhhccCcc--cc-------hhHHHHHHHC
Q 002490 564 RTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYIFKLSLLRKRYDHVMSMIRNSQL--CG-------QAMIAYLQQK 634 (916)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~al~~~~~~~~~~~~~~~~~--~~-------~~i~~~l~~~ 634 (916)
.--.-|+-++++..+. ...-.+.+.++.. ..+..+..++|++++.+-+- .| ..|..||-++
T Consensus 388 ~f~~GPl~vl~~~~G~---------~~~G~l~~~eL~~-~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~ 457 (545)
T PF11768_consen 388 VFERGPLAVLRFKLGV---------FTRGDLGLVELIS-QYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQ 457 (545)
T ss_pred EEcCCCeEEEEEeecc---------ccCCcccHHHHHH-HHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcC
Confidence 2222234444433211 1111333444322 45888999999998765431 11 3466676665
Q ss_pred CC-------chhhcccc---cCcch-----------------hhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002490 635 GF-------PEVALHFV---KDERT-----------------RFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQG 687 (916)
Q Consensus 635 ~~-------~e~al~~~---~~~~~-----------------~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g 687 (916)
-+ .|.|+--+ ..|.. -|.-.+..++++.|+.+|..+.+.+++-.|=-.|+..|
T Consensus 458 pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 458 PLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred CCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 32 22232211 12210 24566888999999999999999999999999999999
Q ss_pred ChhHHHHH
Q 002490 688 NAGIVEYA 695 (916)
Q Consensus 688 ~~~~A~~~ 695 (916)
+...|+.|
T Consensus 538 e~~La~~A 545 (545)
T PF11768_consen 538 ELALAEVA 545 (545)
T ss_pred chhhhhcC
Confidence 98888754
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.7e-07 Score=96.22 Aligned_cols=264 Identities=16% Similarity=0.117 Sum_probs=178.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--C-ceEEEecccccCEEEEEEecCCCEEEEEEC-CCeEEEEECCCC
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--G-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKMH 83 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~--~-~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~-dg~I~vWd~~~~ 83 (916)
|.+.|+.+.-+ ..+++.+++.||.++.|.-.. | +.+..+..|-+.|.+++.+-++.++.|++. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66667666544 457899999999999998432 1 445667789999999999999999999888 999999999875
Q ss_pred eeEEEEe--cCCCCEEEEEEcCCC----CEEEEEECCCcEEEEeCCCCe--EEEEEeCCCCceEEEEEecCCCEEEEEEC
Q 002490 84 RCLFTLL--GHLDYIRTVQFHHEY----PWIVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASFHPKEDLVVSASL 155 (916)
Q Consensus 84 ~~~~~l~--~h~~~v~~v~fs~~~----~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s~ 155 (916)
..+.-+. --.+.+.. +...| ..-++.-.++.|.++|-.... ....-.-|..+|.++.++|.++.+++...
T Consensus 87 DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 5443222 11222211 12222 223344557899999976443 23344569999999999999999999999
Q ss_pred CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002490 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (916)
Q Consensus 156 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~ 235 (916)
.|.|.-|.....-+..... ..+......-.+..........++.|+|++..+.+-+.|..|++++..+
T Consensus 165 ~gmVEyWs~e~~~qfPr~~------------l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTN------------LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cceeEeecCCCcccCcccc------------ccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 9999999987411110000 0000000111112223345678999999999999999999999999988
Q ss_pred Ccceeee------------------------------eeecCCC-CeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE
Q 002490 236 TKAWEVD------------------------------TLRGHMN-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (916)
Q Consensus 236 ~~~~~~~------------------------------~~~~~~~-~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 284 (916)
++..... .+..|.. .-+.+.|...+++|+.++.=| |++.++.+++..+
T Consensus 233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 8752110 0111221 234577888888998887755 8899998888877
Q ss_pred Eee
Q 002490 285 TFR 287 (916)
Q Consensus 285 ~~~ 287 (916)
.+-
T Consensus 312 i~g 314 (558)
T KOG0882|consen 312 ILG 314 (558)
T ss_pred Eec
Confidence 664
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=9.6e-06 Score=82.45 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=155.2
Q ss_pred CCEEEEEEeC-CCCEEEEEecCC-eEEEEECCCCceEEEecccccCEE--EEEEecCCCEEEEEEC-----CCeEEEEEC
Q 002490 10 NRVKGLSFHS-KRPWILASLHSG-VIQLWDYRMGTLIDRFDEHDGPVR--GVHFHKSQPLFVSGGD-----DYKIKVWNY 80 (916)
Q Consensus 10 ~~V~~l~~sp-~~~~la~~~~dg-~I~lwd~~~~~~~~~~~~h~~~V~--~i~fsp~~~~l~s~~~-----dg~I~vWd~ 80 (916)
.+...++.+| ....++.+-.-| ...+||..+++....+....+.-. .-.||++|++|.+.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4566889999 455666676655 478999999998887764433321 3579999999998743 589999999
Q ss_pred C-CCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC------------------CCcEEEEeCCCCeEEEEEe----CCCCc
Q 002490 81 K-MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD------------------DQTIRIWNWQSRTCISVLT----GHNHY 137 (916)
Q Consensus 81 ~-~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~----~h~~~ 137 (916)
. +.+.+.++..|.-.-..+.+.||++.|+++.. +-.+...|..+|+.+.... .|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 9 77888888888877888999999987777632 2346666777888777633 36778
Q ss_pred eEEEEEecCCCEEEEEECCCe-------EEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEE
Q 002490 138 VMCASFHPKEDLVVSASLDQT-------VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (916)
Q Consensus 138 v~~l~~~p~~~~l~s~s~dg~-------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 210 (916)
|..+++.++|..++..-..|. |-+++....-.....+ + .....-...+-++
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p------------------~----~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAP------------------E----EQWRRLNGYIGSI 222 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCC------------------h----HHHHhhCCceEEE
Confidence 999999988865554433221 2222222110000000 0 0112234678899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcE
Q 002490 211 AFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI 272 (916)
Q Consensus 211 ~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i 272 (916)
++++++.++++.+ ..+.+.+||..++.. +.... -..+..++-.+++ ++++.+. |.+
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~--~~~~~--l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRL--LGSVP--LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCE--eeccc--cCceeeeeecCCc-eEEeCCC-ccE
Confidence 9999998775555 678899999999986 22222 1245566666666 5555544 443
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=7.6e-06 Score=83.17 Aligned_cols=258 Identities=14% Similarity=0.103 Sum_probs=146.1
Q ss_pred eEEEEcCCC-CEEEEEECCC-cEEEEECCCCcceeeeeeecCCCC--eEEEEEccCCCEEEEEeC-----CCcEEEEECC
Q 002490 208 NWAAFHPTL-PLIVSGADDR-QVKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNSE-----DKSIRVWDVT 278 (916)
Q Consensus 208 ~~~~~~p~~-~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~~~-----dg~i~vwd~~ 278 (916)
..++.+|+. ..++.+-.-| ...+||..+++. ...+....+. --...|||||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 457788844 4555555555 467889988876 3333222111 113689999999998743 5789999998
Q ss_pred -CCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEE-eCCeEEEEEccCCceeeeEEe
Q 002490 279 -KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPI 356 (916)
Q Consensus 279 -~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 356 (916)
+...+.++..+.-....+.+.|++..|+++. +|+..- -+.+|. .|-.- .+.++...|..+|+.+....+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN-GGI~Th-pd~GR~-------kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN-GGIETH-PDSGRA-------KLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc-CCCccC-cccCce-------ecChhhcCCceEEEecCCCceeeeeec
Confidence 6677888887776777889999998777764 233110 000010 11111 445566677777777666655
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEE
Q 002490 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQV 436 (916)
Q Consensus 357 ~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I 436 (916)
...-+ ...++.+++.++|..++. .. . .- ... . .. -+++.-..++.+
T Consensus 157 p~~~~---~lSiRHLa~~~~G~V~~a-~Q-~-------qg--~~~----------~-~~---------PLva~~~~g~~~ 202 (305)
T PF07433_consen 157 PPDLH---QLSIRHLAVDGDGTVAFA-MQ-Y-------QG--DPG----------D-AP---------PLVALHRRGGAL 202 (305)
T ss_pred Ccccc---ccceeeEEecCCCcEEEE-Ee-c-------CC--CCC----------c-cC---------CeEEEEcCCCcc
Confidence 43222 227888999998773322 11 0 00 000 0 00 022222223333
Q ss_pred EEEccCCceEEEeeCCCceeEEEEeCCceEEEE---ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEEeCCeE
Q 002490 437 LVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR---AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAI 513 (916)
Q Consensus 437 ~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~---~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~~~~~i 513 (916)
............+. ..+-+|+++++|.+++. ..+.+.+||..+++.+.......+..++..+++ ++++.+...+
T Consensus 203 ~~~~~p~~~~~~l~--~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 203 RLLPAPEEQWRRLN--GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQGQL 279 (305)
T ss_pred eeccCChHHHHhhC--CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCCccE
Confidence 44333322222222 25677777777665543 456777777777777777766666666666666 4444444443
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=4.7e-05 Score=88.46 Aligned_cols=309 Identities=10% Similarity=0.061 Sum_probs=177.7
Q ss_pred CceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC
Q 002490 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (916)
Q Consensus 136 ~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 215 (916)
..|.++.|..+.+.++.+...|.|.+.|..+.... ....-+.+|.+++|+||
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----------------------------ivg~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE----------------------------IVGNVDNGISAASWSPD 120 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee----------------------------eeeeccCceEEEeecCC
Confidence 58999999999999999999999999987664321 23335689999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCcceeeeee---ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCc
Q 002490 216 LPLIVSGADDRQVKLWRMNETKAWEVDTL---RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (916)
Q Consensus 216 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 292 (916)
+..++..+..+++.+-...- .+.....+ ....+....+-|-...+.+ -|+ .|.....+..............+.
T Consensus 121 ee~l~liT~~~tll~mT~~f-~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~ 197 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDF-EPIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDH 197 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccc-cchhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccC
Confidence 99999999888877654321 11001111 0011222233443222111 111 111111111110000000012233
Q ss_pred EEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeC-CeEEEEEccCCceeeeEEecCCCCCCCCcCCeEE
Q 002490 293 FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD-RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (916)
Q Consensus 293 i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (916)
-.++.|..||.++|+..-. ...+ +.+++||-+ +.... ...+.. ..-.++
T Consensus 198 ~~~IsWRgDg~~fAVs~~~----------------------~~~~~RkirV~drE-g~Lns-~se~~~------~l~~~L 247 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVE----------------------SETGTRKIRVYDRE-GALNS-TSEPVE------GLQHSL 247 (1265)
T ss_pred CceEEEccCCcEEEEEEEe----------------------ccCCceeEEEeccc-chhhc-ccCccc------ccccce
Confidence 4578999999999885411 1133 789999987 32211 111111 134579
Q ss_pred EEcCCCCEEEEEEcC-CCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEE---EcCCCEEEEEccCC---c
Q 002490 372 SYSPTENAVLICSDV-DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL---DKSSNQVLVKNLKN---E 444 (916)
Q Consensus 372 ~~sp~~~~llv~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~---~~~d~~I~iwdl~~---~ 444 (916)
+|-|.|..+++.... +++.|.+|.-++-.-+....+.......+..++|+.++..|++ ......|++|-+.| -
T Consensus 248 sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 248 SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred eecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 999999987765432 4557888887665554433233344445899999999999988 55556799999987 2
Q ss_pred eEEEeeCCCceeEEEEeCC--ceEEEE-ECCEEEEEEcCCCeEEEEEEcCCeeEEEEc-CCCCEEEEEeCCeEEEEecC
Q 002490 445 VVKKSILPIAADAIFYAGT--GNLLCR-AEDRVVIFDLQQRLVLGDLQTPFVKYVVWS-NDMESVALLSKHAIIIASKK 519 (916)
Q Consensus 445 ~~~~i~~~~~v~~l~~s~~--g~~l~~-~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s-~d~~~la~~~~~~i~i~~~~ 519 (916)
..+.+..+.... +.|+|. -++.+. .+|...++++ .....+| .|+..+++.....+.+.+..
T Consensus 328 LKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~-------------~~~t~~s~~d~S~~~VIDgs~llvT~ls 392 (1265)
T KOG1920|consen 328 LKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF-------------AWTTDRSPNDGSTVYVIDGSRLLVTPLS 392 (1265)
T ss_pred EEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEE-------------EEeeeccCCCCceEEEEeCCEEEEecch
Confidence 334455554222 667775 334444 4666666664 1223333 34555556666666655544
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=1.1e-05 Score=83.08 Aligned_cols=229 Identities=10% Similarity=0.028 Sum_probs=141.8
Q ss_pred CCeEEEEECCCCceEEEecccccCEEEEE--EecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVH--FHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 30 dg~I~lwd~~~~~~~~~~~~h~~~V~~i~--fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
+|+|..||.++|+.+.+..- ...+.... ..+++..+++++.++.+..||..+|+.+.+... ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 68999999999999988853 11121122 334566777778999999999999999888764 22221112 223446
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEE-eCCC---CceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeecc
Q 002490 108 IVSASDDQTIRIWNWQSRTCISVL-TGHN---HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (916)
Q Consensus 108 l~s~s~dg~I~iwd~~~~~~~~~~-~~h~---~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 183 (916)
++.++.++.++.+|..+|+.+... .... ...........++.++++..++.|..+|+++++.....+.....
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~---- 154 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR---- 154 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-----
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC----
Confidence 777778889999999999998884 3221 11222333334788999998999999999987764322110000
Q ss_pred ccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCc-EEEEECCCCcceeeeeeecCCCCeEEEEEccCCCE
Q 002490 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDI 262 (916)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 262 (916)
... ... ....+..-....++ .+..++.++. +.+ |..+++. +.... ...+.. ...+.+..
T Consensus 155 ----------~~~--~~~-~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~--~w~~~--~~~~~~-~~~~~~~~ 214 (238)
T PF13360_consen 155 ----------GSS--PIS-SFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK--LWSKP--ISGIYS-LPSVDGGT 214 (238)
T ss_dssp ----------SS----EE-EETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE--EEEEC--SS-ECE-CEECCCTE
T ss_pred ----------CCc--cee-eecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE--EEEec--CCCccC-CceeeCCE
Confidence 000 000 00112222222344 6666666775 555 9999874 22222 222222 13467788
Q ss_pred EEEEeCCCcEEEEECCCCceeEE
Q 002490 263 IVSNSEDKSIRVWDVTKRTGVQT 285 (916)
Q Consensus 263 l~s~~~dg~i~vwd~~~~~~~~~ 285 (916)
+++++.++.|..||+.+++.+.+
T Consensus 215 l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEeE
Confidence 88888999999999999987643
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=1.9e-05 Score=77.76 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=91.0
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCC--eeEEE---EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 002490 57 VHFHKSQPLFVSGGDDYKIKVWNYKMH--RCLFT---LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (916)
Q Consensus 57 i~fsp~~~~l~s~~~dg~I~vWd~~~~--~~~~~---l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 131 (916)
++.+.+|++||... |..|.|=..++. .++.. -+.....-+.++||||+..||.+...|+|+++|+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 45678888777664 457777655431 12222 2223345688999999999999999999999998653 34444
Q ss_pred eC-------CCCceEEEEEecCC------CEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 132 TG-------HNHYVMCASFHPKE------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 132 ~~-------h~~~v~~l~~~p~~------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
.. -...|..+.|.+.. ..|++...+|.++-|-+..+..... .....+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y--------------------~e~hsf 140 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY--------------------QENHSF 140 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc--------------------eeeEEE
Confidence 32 12456667675432 1455566677777776643211110 001222
Q ss_pred EEec-cCCCeeEEEEcCCCCEEEEEEC
Q 002490 199 VLEG-HDRGVNWAAFHPTLPLIVSGAD 224 (916)
Q Consensus 199 ~~~~-~~~~v~~~~~~p~~~~l~~~~~ 224 (916)
.+.. +..+|+++.++|..++|++|+.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEecc
Confidence 3333 4789999999999998888774
No 312
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=98.67 E-value=3.6e-09 Score=112.24 Aligned_cols=96 Identities=35% Similarity=0.591 Sum_probs=0.4
Q ss_pred chhhhhccccCCCCcc------------cccc--ccccCCCccccccccccCCCCCccccccccCc-cccCCccccCCCC
Q 002490 815 KGIFEGGLDNIGRGAV------------DEEE--EAVEGDWGEELDMVDVDGLQNGDVAAILEDGE-VAEEGEEEEGGWD 879 (916)
Q Consensus 815 ~~~~~~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 879 (916)
++|||.++...|+.+. ++.+ ...+++||++.|+++|++ +..+..+...+.+ .+++++||++|||
T Consensus 1 kg~fe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wg~d~d~~~D~d-~~~~~~d~~~~~~~ge~~~~~e~~gWD 79 (422)
T PF06957_consen 1 KGFFEGALAGKGGGSATDRGAAVEDEDAAALDEDDAAGGGWGEDEDLGLDED-GLDEAEDGEADDDEGEEEDEDEEGGWD 79 (422)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcchhhhhccccccccccccccchhhhhhhcccccCCcccccccccccCcc-ccccccccccccccccccccccccccc
Confidence 5799999975433111 0111 124566998666654431 1111100000000 1123345677999
Q ss_pred CC-CCCCCCCCCCCCC-CCCCCceeEeeeeeeee
Q 002490 880 LE-DLELPPEAETPKA-PVNARSAVFGATLICVH 911 (916)
Q Consensus 880 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 911 (916)
|+ ||+||+|++++.+ +++..+++||+|++|.-
T Consensus 80 ~ddDl~lp~e~d~~~~~~~~~~~~~~v~p~~g~~ 113 (422)
T PF06957_consen 80 LDDDLDLPEELDVPDGVAGSAEDGYFVAPTPGSS 113 (422)
T ss_dssp ---------------------------------H
T ss_pred cccccCCCcccccccccccccccccccCCCCCCC
Confidence 98 9999999988874 46689999999998864
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=6.6e-07 Score=98.85 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=131.7
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
..++|+++| ++.|+.|+++|.|++.+. .+.. .+...|... ..+|.+++||+.||+|.|-.+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEec-CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677777 678999999999999995 4444 433345544 668999999999999999999888877766
Q ss_pred ecCCCCEEEEEEcCC-----CCEEEEEECCCcEEEEeCC--CCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 002490 90 LGHLDYIRTVQFHHE-----YPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~-----~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vw 162 (916)
. -..++.+++++|+ .+.+++|+.-| +.++.-. ..+....+..-.++|.++.|. |++++-++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 5 4668999999998 45899999888 7776422 222222456667899999996 78999998777 9999
Q ss_pred ECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECC
Q 002490 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~ 234 (916)
|+...+.....+.+. .....+.--..+.|.++.+ |+.|- .-+|+|..++
T Consensus 185 d~~~~~~l~~i~~p~---------------------~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPS---------------------QSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCC---------------------CCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 998876654433211 0000111223567777654 55554 4568887776
No 314
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=3e-07 Score=93.70 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=110.7
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEECCCCe----eEEEEecCCCCEEEEEEcCCCCEEEE---EECCCcEEEEeCCCCe
Q 002490 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIVS---ASDDQTIRIWNWQSRT 126 (916)
Q Consensus 54 V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~----~~~~l~~h~~~v~~v~fs~~~~~l~s---~s~dg~I~iwd~~~~~ 126 (916)
+..+..++.+++++.+..+....++++.... ++.... -...-+++.|..+...... +++...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4455678899999999888777777765432 222222 2223344555554444443 3445566677766544
Q ss_pred EEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC
Q 002490 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (916)
Q Consensus 127 ~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (916)
+ ..+-||-+.++.++|+||+++|+++..|..||+-....... +.....||..-
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------------------------IesfclGH~eF 196 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------------------------IESFCLGHKEF 196 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------------------------hhhhccccHhh
Confidence 3 44457999999999999999999999999999977654211 22355689999
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 207 v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
|..++.-++. .|++++.|++|++||+.+++.
T Consensus 197 VS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 197 VSTISLTDNY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence 9999998875 489999999999999999987
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.4e-07 Score=94.07 Aligned_cols=211 Identities=16% Similarity=0.130 Sum_probs=150.6
Q ss_pred ccccCEEEEEEecCCCEEEEEECCCeEEEEECCC--C-eeEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEeCCC
Q 002490 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--H-RCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQS 124 (916)
Q Consensus 49 ~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~--~-~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~-dg~I~iwd~~~ 124 (916)
-|...|+.+.-+ -.+++.+++-||.++.|.-.. + +.+..+..|...|.+++.+.++.++.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777766443 456899999999999998543 1 233445678889999999999988899777 99999999987
Q ss_pred CeEEEEEeC--CCCceEEEEEecCCC---EE-EEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 125 RTCISVLTG--HNHYVMCASFHPKED---LV-VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 125 ~~~~~~~~~--h~~~v~~l~~~p~~~---~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
-..+..++. ..+.+.+ +...|. .+ ++.-.++.+.++|-...... ..+
T Consensus 86 ~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-------------------------~~~ 138 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-------------------------DGY 138 (558)
T ss_pred cchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------------cce
Confidence 655543331 2222221 222231 33 33345788999997653321 233
Q ss_pred EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC-cc------ee------eeeeecCCCCeEEEEEccCCCEEEE
Q 002490 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KA------WE------VDTLRGHMNNVSCVMFHAKQDIIVS 265 (916)
Q Consensus 199 ~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~-~~------~~------~~~~~~~~~~v~~l~~sp~~~~l~s 265 (916)
.-.-|..+|..+.+.|.+..+++....|.|.-|..... +. +. +..+.......+++.|+|++..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 45568999999999999999999999999999988731 00 00 1112234456789999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEee
Q 002490 266 NSEDKSIRVWDVTKRTGVQTFR 287 (916)
Q Consensus 266 ~~~dg~i~vwd~~~~~~~~~~~ 287 (916)
-+.|..|++++..+++.++.+.
T Consensus 219 l~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cCcccEEEEEEeccchhhhhhh
Confidence 9999999999999998877664
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=5.7e-07 Score=87.98 Aligned_cols=247 Identities=11% Similarity=0.190 Sum_probs=141.0
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcce---eeeeeecCC------------CCeEEEEEccCC--CEEEEE
Q 002490 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW---EVDTLRGHM------------NNVSCVMFHAKQ--DIIVSN 266 (916)
Q Consensus 204 ~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~------------~~v~~l~~sp~~--~~l~s~ 266 (916)
...|+++.|...|.++++|...|.|.+|.-...... -...+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 456899999999999999999999999976554311 122344443 236677776543 356777
Q ss_pred eCCCcEEEEECCCCceeEE--------eec-cCCcEEE------EEEecCCCeEEEEeCCCce--EEEecCCcceEEecC
Q 002490 267 SEDKSIRVWDVTKRTGVQT--------FRR-EHDRFWI------LASHPEMNLLAAGHDSGMI--VFKLERERPAFAVSG 329 (916)
Q Consensus 267 ~~dg~i~vwd~~~~~~~~~--------~~~-~~~~i~~------l~~sp~~~~la~g~~~~~~--v~~~~~~~~~~s~~~ 329 (916)
+.|.+|++|.+........ +.. ..+++.+ -..+....++++ ....+. .....-....+..+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-KPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-ccceeccccceeEeeeeeecCch
Confidence 8899999998865421100 000 0111111 011111111211 111110 000000111233344
Q ss_pred CEEEEEeCCeEEEEEccC-CceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC-----CC
Q 002490 330 DSLFYAKDRFLRYYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-----GR 403 (916)
Q Consensus 330 ~~l~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~-----~~ 403 (916)
..++.+.+-.|.+|++.- .....+..++......+..-|++..|+|....++.-+. ..|.|++-++..... ..
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhh
Confidence 455556777888888765 33344444443222111226788899998777665554 558999998863321 10
Q ss_pred Cc--------cccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC--CceEEEeeCCC
Q 002490 404 GD--------SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK--NEVVKKSILPI 453 (916)
Q Consensus 404 ~~--------~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~--~~~~~~i~~~~ 453 (916)
.. .........|..+.|+++|||+++-+ --+|+|||.. ..+++++..+.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHH
Confidence 00 01222334678899999999998877 6899999998 46778876654
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=5.3e-05 Score=72.97 Aligned_cols=148 Identities=18% Similarity=0.087 Sum_probs=94.7
Q ss_pred CCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 226 (916)
..+++.|+..+.+.-.|..+++...... + ...+.+-+.- -|++++.|+..|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------------------l---g~RiE~sa~v-vgdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------------------L---GVRIECSAIV-VGDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-------------------------h---CceeeeeeEE-ECCEEEEEEccC
Confidence 3477888888888888887765432211 1 1122221111 356799999999
Q ss_pred cEEEEECCCCcc-eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEec-CCCe
Q 002490 227 QVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNL 304 (916)
Q Consensus 227 ~v~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp-~~~~ 304 (916)
.+++.+.+++.. |....+.. -=......+++.+|..++.|++.+..|.++..++...+...+-+.+-+..| ++.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILET---VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL 150 (354)
T ss_pred cEEEEEecchhheeeeeehhh---hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE
Confidence 999999999954 32222221 112345577899999999999999999999998888776665555555555 4443
Q ss_pred EEEEeC---------CC--ceEEEecCCcceEE
Q 002490 305 LAAGHD---------SG--MIVFKLERERPAFA 326 (916)
Q Consensus 305 la~g~~---------~~--~~v~~~~~~~~~~s 326 (916)
.++... .+ ..+|....+.|.|+
T Consensus 151 y~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~ 183 (354)
T KOG4649|consen 151 YAAITAGAVLAVTKNPYSSTEFWAATRFGPIFA 183 (354)
T ss_pred EEEeccceEEEEccCCCCcceehhhhcCCcccc
Confidence 333222 22 34666666666554
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.55 E-value=5e-05 Score=84.49 Aligned_cols=260 Identities=8% Similarity=-0.015 Sum_probs=141.2
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEeccccc----------CEE-EEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG----------PVR-GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~----------~V~-~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
.+..+++++.+|.+.-+|.++|+.+-+.+.... .+. .+.. .+..++.++.++.+..+|.++|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356778888899999999999998877653220 000 0111 345677788899999999999998877
Q ss_pred EecCCCCEEE-EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceE-EEEEec--CCCEEEEEECCCeEEEEEC
Q 002490 89 LLGHLDYIRT-VQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM-CASFHP--KEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 89 l~~h~~~v~~-v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~-~l~~~p--~~~~l~s~s~dg~v~vwd~ 164 (916)
..... .+.+ .... +..++.++.++.+..+|..+|+.+.........+. ...-+| .+..++.++.++.+..+|.
T Consensus 146 ~~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 65332 2221 1111 34577778889999999999998887753211100 000011 1345777788899999998
Q ss_pred CCCcceeccCCccce---e---ec-------ccccccc-ccccceEEEEEeccCCCeeEE-E------EcCCCCEEEEEE
Q 002490 165 GALRKKTVSPADDIL---R---LS-------QMNTDLF-GGVDAVVKYVLEGHDRGVNWA-A------FHPTLPLIVSGA 223 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~---~---~~-------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~------~~p~~~~l~~~~ 223 (916)
.+++.....+..... . +. .....++ ...+. ....+....+.+.+- . ....+..++.++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~ 301 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVD 301 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCCCCEEEeecCCCccCcEEECCEEEEEc
Confidence 877654332110000 0 00 0000011 00011 111111111111110 0 011234566667
Q ss_pred CCCcEEEEECCCCcceeeeeeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 002490 224 DDRQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 224 ~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 289 (916)
.+|.+..+|..+++. +....... ....+... .+..++.++.+|.+.+.|..+|+.+...+..
T Consensus 302 ~~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 302 QNDRVYALDTRGGVE--LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCCeEEEEECCCCcE--EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 778888888877653 21111100 11111222 2456777778888888888888777666543
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.55 E-value=8.4e-05 Score=81.08 Aligned_cols=315 Identities=12% Similarity=0.054 Sum_probs=170.5
Q ss_pred cCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceec
Q 002490 102 HHEYPWIVSAS---------DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172 (916)
Q Consensus 102 s~~~~~l~s~s---------~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~ 172 (916)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777666532 246789999999876544333 56788899999999999887 67899998877654443
Q ss_pred cCCccceeeccccccccccccceEEEEEecc-CCCeeEEEEcCCCCEEEEEEC-CCcEEEEECCCCcceeeeeeecCC--
Q 002490 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHM-- 248 (916)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~-- 248 (916)
...+.. ....|..+ .+.+.. -..-..+.|||++++|+.... +..|..+.+.. .....
T Consensus 79 T~dg~~-------~i~nG~~d----wvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~--------~~~~~~~ 139 (353)
T PF00930_consen 79 TTDGEP-------GIYNGVPD----WVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD--------YSPPDSQ 139 (353)
T ss_dssp ES--TT-------TEEESB------HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE--------ESSSTES
T ss_pred ccccce-------eEEcCccc----eeccccccccccceEECCCCCEEEEEEECCcCCceEEeec--------cCCcccc
Confidence 322100 00011100 000110 122356899999998887653 34444443211 11111
Q ss_pred -CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE-e----eccCCcEEEEEEecCCCeEE-EEeCCCceEEEecCC
Q 002490 249 -NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT-F----RREHDRFWILASHPEMNLLA-AGHDSGMIVFKLERE 321 (916)
Q Consensus 249 -~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-~----~~~~~~i~~l~~sp~~~~la-~g~~~~~~v~~~~~~ 321 (916)
-.+..+.+-.-|.-... -.+.|+|+.+++.... . .....-+..+.|.+++..++ .-.+..-
T Consensus 140 yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q-------- 207 (353)
T PF00930_consen 140 YPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ-------- 207 (353)
T ss_dssp S-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS--------
T ss_pred CCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC--------
Confidence 12334444222322211 1467788887765321 1 12334578899999888343 3222211
Q ss_pred cceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEc-CCCCEEEEEEcCCCCEEEEEEeeCCC
Q 002490 322 RPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS-PTENAVLICSDVDGGSYELYVIPKDS 400 (916)
Q Consensus 322 ~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~~~~llv~~~~~~g~i~i~~~~~~~ 400 (916)
....+.++|..++....+......+-.. ......|. +++..++..+. .+|.-+||.++...
T Consensus 208 --------------~~~~l~~~d~~tg~~~~~~~e~~~~Wv~---~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 208 --------------NRLDLVLCDASTGETRVVLEETSDGWVD---VYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG 269 (353)
T ss_dssp --------------TEEEEEEEEECTTTCEEEEEEESSSSSS---SSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS
T ss_pred --------------CEEEEEEEECCCCceeEEEEecCCccee---eecccccccCCCCEEEEEEE-cCCCcEEEEEcccc
Confidence 1133556677666655554433323211 33456665 88888888777 66788888776554
Q ss_pred CCCCccccccccCceeE-EEEEeCCcEE-EEEcC----CCEEEEEccC-CceEEEeeCCCcee-EEEEeCCceEEEE
Q 002490 401 IGRGDSVQDAKKGLGGS-AIFIARNRFA-VLDKS----SNQVLVKNLK-NEVVKKSILPIAAD-AIFYAGTGNLLCR 469 (916)
Q Consensus 401 ~~~~~~~~~~~~~~i~~-~~fs~~~~~l-~~~~~----d~~I~iwdl~-~~~~~~i~~~~~v~-~l~~s~~g~~l~~ 469 (916)
.... .+....-.|.. +.+.++++.+ +++.. ...|..-+++ +...+.+....... .+.|||+|++++.
T Consensus 270 ~~~~--~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 270 GKPR--QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp SEEE--ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred ccee--ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 3211 22233334544 6677776544 44443 2367777777 77777777776555 8889999888764
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=8.3e-07 Score=84.97 Aligned_cols=148 Identities=17% Similarity=0.290 Sum_probs=97.1
Q ss_pred eCCCCEEEEEecCCeEEEEECCCCceE-EEec-ccccCEEEEEEecCCCEEEEEE-----CCCeEEEEECCCCeeEEEEe
Q 002490 18 HSKRPWILASLHSGVIQLWDYRMGTLI-DRFD-EHDGPVRGVHFHKSQPLFVSGG-----DDYKIKVWNYKMHRCLFTLL 90 (916)
Q Consensus 18 sp~~~~la~~~~dg~I~lwd~~~~~~~-~~~~-~h~~~V~~i~fsp~~~~l~s~~-----~dg~I~vWd~~~~~~~~~l~ 90 (916)
+--++.++++..||.+.+.+.+.-..+ +++. .|.+. .+.+....+.++.+++ .-+..+.|+++..+.+..-.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 334667999999999999996542111 1111 11111 1222333444454432 12345666665433332222
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEE-EEEeCCCCceEEEEEecC-CCEEEEEECCCeEEEEECCC
Q 002490 91 GHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCI-SVLTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGA 166 (916)
Q Consensus 91 ~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~-~~~~~h~~~v~~l~~~p~-~~~l~s~s~dg~v~vwd~~~ 166 (916)
...+.|.+++-+|..+ .+++|+.||.+-+||++..... ..+..|..++..+.|+|. +..|+++++||.+.-||.++
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2334599999998654 7778889999999999877533 355789999999999995 46999999999999999765
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.52 E-value=1.3e-05 Score=88.91 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=173.6
Q ss_pred EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC-CCee-------EEEE---cCCCC
Q 002490 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVN-------WAAF---HPTLP 217 (916)
Q Consensus 149 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~-------~~~~---~p~~~ 217 (916)
.+.||+..|.|+|+-+.+.+.....+.-. .....-+|..+...+..-.++. +.+. .+++ ..||+
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~-----~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr 142 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFN-----RDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR 142 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeec-----CCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee
Confidence 47788899999999999888765544211 0011111111111000000110 0010 1111 12677
Q ss_pred EEEEEEC-CCcEEEEECCCCcceeeeeeecCCCCeEEEE-------------------EccCCCEEEEEe-CCCcEEEEE
Q 002490 218 LIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSCVM-------------------FHAKQDIIVSNS-EDKSIRVWD 276 (916)
Q Consensus 218 ~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~-------------------~sp~~~~l~s~~-~dg~i~vwd 276 (916)
++..-.. +.+|...++...++-.+..++ ....+..+. ++|||+.+...+ ..+.+.+.|
T Consensus 143 ~~findk~n~Rvari~l~~~~~~~i~~iP-n~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID 221 (635)
T PRK02888 143 YLFINDKANTRVARIRLDVMKCDKITELP-NVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVD 221 (635)
T ss_pred EEEEecCCCcceEEEECccEeeceeEeCC-CccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEE
Confidence 7777653 455666666554432233322 111222222 344554443222 235577778
Q ss_pred CCCCceeEEeeccCCcEEEEEEecCCCeEEEEe---CCCceEEEecCCc------------ceEEecCCEEEEEeCCeEE
Q 002490 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGH---DSGMIVFKLERER------------PAFAVSGDSLFYAKDRFLR 341 (916)
Q Consensus 277 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~---~~~~~v~~~~~~~------------~~~s~~~~~l~~~~d~~i~ 341 (916)
..+.+...++.... +...++++|++.++.+.+ ..+..+-.+.... ..+..+|+..++ .++.|.
T Consensus 222 ~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-~gn~V~ 299 (635)
T PRK02888 222 AETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-GGSKVP 299 (635)
T ss_pred CccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE-CCCEEE
Confidence 88777766665443 557789999999988765 3333333322211 123335554443 567899
Q ss_pred EEEccC-----CceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC---CC------Cccc
Q 002490 342 YYEFST-----QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI---GR------GDSV 407 (916)
Q Consensus 342 ~~d~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~---~~------~~~~ 407 (916)
+.|..+ .+....++..+ .+..+.+||||+++++++. -+.++.++++.+... .. +...
T Consensus 300 VID~~t~~~~~~~v~~yIPVGK--------sPHGV~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVPK--------NPHGVNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCccccCCcceEEEEECCC--------CccceEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 999887 34555555544 6778999999999888776 557999999876432 00 0001
Q ss_pred cccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC-----------ceEEEeeCCCceeEEEE------eCCceEEEE
Q 002490 408 QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-----------EVVKKSILPIAADAIFY------AGTGNLLCR 469 (916)
Q Consensus 408 ~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~-----------~~~~~i~~~~~v~~l~~------s~~g~~l~~ 469 (916)
...-.+ -...+|.++|....+..-|..|..||+.. ..+.++..+..+-.+.. .|||++|++
T Consensus 371 vevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~ 448 (635)
T PRK02888 371 PELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVS 448 (635)
T ss_pred eccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEE
Confidence 111112 23578899988777778899999999875 35666777666666666 788999987
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=1.9e-06 Score=82.60 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=118.5
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCceE------------EEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI------------DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 12 V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~------------~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
|+.+.|+.+- .|+++..++.+.....-.+.++ +.+..|.++-.+-+-+-.+..+++++.||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666666544 4666766666665554333322 23333444333333344566799999999999999
Q ss_pred CCCCeeE-EEEe-cCCCCEEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEE
Q 002490 80 YKMHRCL-FTLL-GHLDYIRTVQFHHEYPWIVSAS-----DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVV 151 (916)
Q Consensus 80 ~~~~~~~-~~l~-~h~~~v~~v~fs~~~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~ 151 (916)
.+.-..+ ..+. .|.+. .+.+....++.+.++. .-+..++|+++..+....-......|.+++-+|..+ .++
T Consensus 118 ~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 7641111 1111 11111 1122222333333321 123456666654333322222234489999999654 778
Q ss_pred EEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-CCEEEEEECCCcEEE
Q 002490 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKL 230 (916)
Q Consensus 152 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~v~i 230 (916)
+|+.||.+.+||.++... +...+..|+.+++-+-|||. +..|++++.||.+.-
T Consensus 197 cgt~dg~~~l~d~rn~~~--------------------------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAM--------------------------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred EecCCCeEEEEEcccccc--------------------------hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 888999999999988522 12356789999999999995 558999999999999
Q ss_pred EECCC
Q 002490 231 WRMNE 235 (916)
Q Consensus 231 wd~~~ 235 (916)
||.++
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99876
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=2.9e-07 Score=91.47 Aligned_cols=146 Identities=17% Similarity=0.277 Sum_probs=114.0
Q ss_pred EEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCC-----eeEEEEecCCCCEEEEE
Q 002490 26 ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-----RCLFTLLGHLDYIRTVQ 100 (916)
Q Consensus 26 ~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~-----~~~~~l~~h~~~v~~v~ 100 (916)
+.+.+-.|-+-|+++|-. +.|. ..+.|.++.|...++++..|+.+|.|.+.|++.+ .+...+. |...|+++.
T Consensus 229 s~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred cccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 334566788889887743 3443 6778999999999999999999999999999854 3444444 899999998
Q ss_pred EcC-CCCEEEEEECCCcEEEEeCCCCeE---EEEEeCCCCceEEE--EEecCCCEEEEEECCCeEEEEECCCCcceeccC
Q 002490 101 FHH-EYPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCA--SFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (916)
Q Consensus 101 fs~-~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~h~~~v~~l--~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 174 (916)
.-. ++++|.+.+.+|+|++||.+--++ +..+.||...-.-+ ..++....+++++.|...|+|.++.+......|
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 877 778999999999999999986666 88888886543333 334556689999999999999999877655544
No 324
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=4e-07 Score=63.10 Aligned_cols=39 Identities=23% Similarity=0.595 Sum_probs=37.0
Q ss_pred CceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 41 ~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
|+++.++++|.++|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 325
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.47 E-value=0.0065 Score=69.88 Aligned_cols=522 Identities=12% Similarity=0.110 Sum_probs=257.2
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceE-------EEecccccCEEEEEEec----CCCEEEEEE---CCCeE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-------DRFDEHDGPVRGVHFHK----SQPLFVSGG---DDYKI 75 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~-------~~~~~h~~~V~~i~fsp----~~~~l~s~~---~dg~I 75 (916)
+-..|+.+-++| .|.+|++.|.=++-.+.+.... .++. .-+||..++.-. .++.++|++ .||++
T Consensus 307 siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 307 SIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred chhhhhhcccCc-eEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 334555555555 6788888777677776544322 3332 456888887743 234566664 48899
Q ss_pred EEEECCCCe---eEEEEecCCCCEEEEE--EcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec-CCC
Q 002490 76 KVWNYKMHR---CLFTLLGHLDYIRTVQ--FHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KED 148 (916)
Q Consensus 76 ~vWd~~~~~---~~~~l~~h~~~v~~v~--fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~ 148 (916)
++....-+- -...+.| ...++.+. +.++.. +|+.+-.+. -++..+...-......+.......+..+. .++
T Consensus 385 RiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~ 462 (1096)
T KOG1897|consen 385 RIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFCSTINGN 462 (1096)
T ss_pred EEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccc-eEEEEEccceEEeccccccccCceEEEEccCCc
Confidence 998643221 1122333 34566666 443222 555444333 34444432211111122222222222221 222
Q ss_pred EEEEEECCCeEEEEECCCCcceeccCCccceeeccccc---ccccc---------ccceE-EEEEeccCCCeeEEEEcCC
Q 002490 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT---DLFGG---------VDAVV-KYVLEGHDRGVNWAAFHPT 215 (916)
Q Consensus 149 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~-~~~~~~~~~~v~~~~~~p~ 215 (916)
.|+=.. ...||+++-.........+..........+. .+.++ .+..+ .......+..|.|+.++|-
T Consensus 463 ~lvQvT-s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~ 541 (1096)
T KOG1897|consen 463 QLVQVT-SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPL 541 (1096)
T ss_pred eEEEEe-cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccC
Confidence 322222 2335665554333333333322222111111 11111 01110 0111223467889999975
Q ss_pred C------CEEEEEECCCcEEEEECCCCcceeeee-eecC--CCCeEEEEEccCCCEEEEEeCCCcEEEEEC--CCCceeE
Q 002490 216 L------PLIVSGADDRQVKLWRMNETKAWEVDT-LRGH--MNNVSCVMFHAKQDIIVSNSEDKSIRVWDV--TKRTGVQ 284 (916)
Q Consensus 216 ~------~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~--~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~--~~~~~~~ 284 (916)
| +++++|..+..+.+.-........... +.+. ...|.-..+-.+..+|.++..||.+..|-+ .++..-.
T Consensus 542 ~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd 621 (1096)
T KOG1897|consen 542 GDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD 621 (1096)
T ss_pred CCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence 2 278888877766554333222111111 1111 123334455556789999999999876644 4443222
Q ss_pred Eee--ccCCcEEEEEEecC-CCeEEEEeCCCceEEEecCC---------cc----eE--EecCCEEEEEeCCeEEEEEcc
Q 002490 285 TFR--REHDRFWILASHPE-MNLLAAGHDSGMIVFKLERE---------RP----AF--AVSGDSLFYAKDRFLRYYEFS 346 (916)
Q Consensus 285 ~~~--~~~~~i~~l~~sp~-~~~la~g~~~~~~v~~~~~~---------~~----~~--s~~~~~l~~~~d~~i~~~d~~ 346 (916)
..+ ....++.--.|+.. .+.+.+.+|.-.++|..... .. .+ ...++.|+++..+.+.+.-+.
T Consensus 622 ~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid 701 (1096)
T KOG1897|consen 622 RKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTID 701 (1096)
T ss_pred ccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEec
Confidence 111 11223333333332 33444444444444432221 10 11 223467888888889888877
Q ss_pred CCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCC---------CCEEEEEEeeCCCCCCCccccccc------
Q 002490 347 TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD---------GGSYELYVIPKDSIGRGDSVQDAK------ 411 (916)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~------ 411 (916)
.-+.+....++- ...++.+++.+....+.+.+..- ...+....+-...+-. .+..|
T Consensus 702 ~iqkl~irtvpl------~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~---vl~~hef~~~E 772 (1096)
T KOG1897|consen 702 EIQKLHIRTVPL------GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE---VLSSHEFERNE 772 (1096)
T ss_pred chhhcceeeecC------CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee---EEeeccccccc
Confidence 644444333332 22778888888555555544321 1112222221111111 11111
Q ss_pred -cCceeEEEEEeC-CcEEEEEcC----------CCEEEEEccCC-ceEEEe---eCCCceeEEEEeCCceEEEEECCEEE
Q 002490 412 -KGLGGSAIFIAR-NRFAVLDKS----------SNQVLVKNLKN-EVVKKS---ILPIAADAIFYAGTGNLLCRAEDRVV 475 (916)
Q Consensus 412 -~~~i~~~~fs~~-~~~l~~~~~----------d~~I~iwdl~~-~~~~~i---~~~~~v~~l~~s~~g~~l~~~d~~v~ 475 (916)
.-.+.++.|..| +.+++.|+. .|.|.|+.+.. +.++.+ ...+.+.++.. -+|++||.-+..|+
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vr 851 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVR 851 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEE
Confidence 123455568877 778887753 47788887764 333222 22223333321 25899999999999
Q ss_pred EEEcCCCeEEEEEE--cCCeeEEEEcCCCCEEEEEe-CCeEEEE--ecCCcceEEEee---eeeEEEEEEecCCeEEEE
Q 002490 476 IFDLQQRLVLGDLQ--TPFVKYVVWSNDMESVALLS-KHAIIIA--SKKLVHQCTLHE---TIRVKSGAWDDNGVFIYT 546 (916)
Q Consensus 476 l~d~~~~~~~~~~~--~~~v~~v~~s~d~~~la~~~-~~~i~i~--~~~~~~~~~~~~---~~~i~s~~w~~~~~~l~~ 546 (916)
+|++.+.+.+..-. ..++..+...-.|..++++. -..+.+. +..-+....+.. +..+.++..-++..++-+
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEee
Confidence 99999986665433 25677777788889998888 4555544 444444444433 444555555555555544
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.8e-05 Score=80.72 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=78.5
Q ss_pred EEEEECCCCeeEEEEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC-EEEE
Q 002490 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVS 152 (916)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~s 152 (916)
+++.+..+.+...-+.+|...|+.++|||... ++..++.+.+|+|.|+++..++..+..+ ..+.+++|.-+.. +|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555666677888999999999877 7889999999999999999999998877 7899999987654 7888
Q ss_pred EECCCeEEEEECCCCc
Q 002490 153 ASLDQTVRVWDIGALR 168 (916)
Q Consensus 153 ~s~dg~v~vwd~~~~~ 168 (916)
|...|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8899999999998754
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.45 E-value=5.6e-05 Score=82.47 Aligned_cols=290 Identities=11% Similarity=0.063 Sum_probs=155.3
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q 002490 213 HPTLPLIVSGA---------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (916)
Q Consensus 213 ~p~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 283 (916)
|||+++++... ..+.+.+||+.+++..++.. ....+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 57777766643 24578899999987433322 256778899999999999886 578999998777443
Q ss_pred EEeecc-----------------CCcEEEEEEecCCCeEEEEe--CCCceEEEecCCcceEE--ecCCEEEEE------e
Q 002490 284 QTFRRE-----------------HDRFWILASHPEMNLLAAGH--DSGMIVFKLERERPAFA--VSGDSLFYA------K 336 (916)
Q Consensus 284 ~~~~~~-----------------~~~i~~l~~sp~~~~la~g~--~~~~~v~~~~~~~~~~s--~~~~~l~~~------~ 336 (916)
+.-... -+.-..+.||||++.||... +..+..+.+..-.+.-. +.-..+-+. .
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 322111 12335688999999998653 44444443322111000 000011111 1
Q ss_pred CCeEEEEEccCCceeeeEEec-CCCCCCCCcCCeEEEEcCCCCEEE-EEEcCCCCEEEEEEeeCCC--CCCCc-cccccc
Q 002490 337 DRFLRYYEFSTQKDTQVIPIR-RPGSTSLNQSPRTLSYSPTENAVL-ICSDVDGGSYELYVIPKDS--IGRGD-SVQDAK 411 (916)
Q Consensus 337 d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~sp~~~~ll-v~~~~~~g~i~i~~~~~~~--~~~~~-~~~~~~ 411 (916)
.-.+.++++.+++...+.... .... ...+..+.|.++++.++ ...........++..+... ..... ....+-
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~---~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQ---DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTS---SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCC---ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 124667888877654322220 0011 22788999999999444 4443344455555543322 11110 011111
Q ss_pred cCceeEEEEE-eC-CcEEEEEcCCC--EEEEEccCCceEEEeeCCC-ceeE-EEEeCCceEEEE-EC------CEEEEEE
Q 002490 412 KGLGGSAIFI-AR-NRFAVLDKSSN--QVLVKNLKNEVVKKSILPI-AADA-IFYAGTGNLLCR-AE------DRVVIFD 478 (916)
Q Consensus 412 ~~~i~~~~fs-~~-~~~l~~~~~d~--~I~iwdl~~~~~~~i~~~~-~v~~-l~~s~~g~~l~~-~d------~~v~l~d 478 (916)
-.......|. ++ +.++.....+| .|.+++..+...+.+.... .|.. +.+++++..+.. .. ..|+..+
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 1223355665 44 46666665666 5666666677666666554 6755 668888666654 22 2666667
Q ss_pred cCCCeEEEEEE-cCCe-eEEEEcCCCCEEEEEe
Q 002490 479 LQQRLVLGDLQ-TPFV-KYVVWSNDMESVALLS 509 (916)
Q Consensus 479 ~~~~~~~~~~~-~~~v-~~v~~s~d~~~la~~~ 509 (916)
+..+..+..+. .... ..+.|||||++++...
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 77233444444 3333 4899999999987654
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.43 E-value=0.00096 Score=70.31 Aligned_cols=334 Identities=15% Similarity=0.151 Sum_probs=143.5
Q ss_pred EECCCCceEEEecccccCEEE-----EEEecCCCEEEEEEC---CCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCE
Q 002490 36 WDYRMGTLIDRFDEHDGPVRG-----VHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (916)
Q Consensus 36 wd~~~~~~~~~~~~h~~~V~~-----i~fsp~~~~l~s~~~---dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~ 107 (916)
-|..||..+.++..+.+.-.. =+|.++|+.|+.+++ ...+.+-|+.+++..+--.+..........+++++.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 366788888877644433222 256788987777665 456777788887766544432222335667888888
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec--CCCEEEEEECCCeEEEEECCCCcce-----eccCCcccee
Q 002490 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKK-----TVSPADDILR 180 (916)
Q Consensus 108 l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p--~~~~l~s~s~dg~v~vwd~~~~~~~-----~~~~~~~~~~ 180 (916)
++-...+..++-.|+++.+....+......+-...|.. ++..++-.-.... -|........ ...+....+.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEE
Confidence 77666677899999999887666666667666666653 3444332210000 0000000000 0000000000
Q ss_pred eccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC-------cEEEEECCCCcceeeeeeecCCCCeEE
Q 002490 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-------QVKLWRMNETKAWEVDTLRGHMNNVSC 253 (916)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~v~~ 253 (916)
+ ++ ..+..+.++ .....+..+.|+|..+-+++-+..| .|.+.+......+++.... ....+..
T Consensus 173 i-----dl---~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gH 242 (386)
T PF14583_consen 173 I-----DL---KTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGH 242 (386)
T ss_dssp E-----ET---TT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEE
T ss_pred E-----EC---CCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccccc
Confidence 0 00 011122222 2345677889999777665554332 3433344444433332221 1233445
Q ss_pred EEEccCCCEEEEEe-----CCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEE-EeCCCceEEEecCCcceEEe
Q 002490 254 VMFHAKQDIIVSNS-----EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA-GHDSGMIVFKLERERPAFAV 327 (916)
Q Consensus 254 l~~sp~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~-g~~~~~~v~~~~~~~~~~s~ 327 (916)
=-|.|||..|.--+ .+..|.-+|+.++........ .....+..++++++++- |++..+.+-+-
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~--------- 311 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADA--------- 311 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCcccccc---------
Confidence 57899998776543 244577788888765433222 24556777889988764 44333322100
Q ss_pred cCCEEEEEeCCeEEEEEccCCceeeeEEecC-----CCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEee
Q 002490 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR-----PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (916)
Q Consensus 328 ~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~ 397 (916)
+...+ -.+..++++++..+....+..... .++ . ...--..+|+|||+.++..++ ..|...||-+.
T Consensus 312 -~~~~~-~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~-~-q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~ 381 (386)
T PF14583_consen 312 -GGYKI-ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD-R-QVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVE 381 (386)
T ss_dssp -----------EEEEEETTTTEEEEEEE-------BTTB-S-STT----EE-TTSSEEEEEE--TTSS-EEEEEE
T ss_pred -cccee-cCCcEEEEeccccCceeeeeeccCcceeecCC-C-ccCCCCCccCCCCCEEEEECC-CCCCccEEEEe
Confidence 00000 023355666666554433322110 000 0 001235899999999999998 45677777653
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=1.3e-05 Score=89.81 Aligned_cols=181 Identities=14% Similarity=0.208 Sum_probs=135.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEE
Q 002490 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (916)
Q Consensus 63 ~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~ 142 (916)
+..++.|+-...+..+|+.+.+..+...-....|.-++ .+++++.+|...|+|.+-|..+-+.+.++..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 34567777777888889988887777654454565554 4567899999999999999999999999999999997655
Q ss_pred EecCCCEEEEEEC---------CCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc
Q 002490 143 FHPKEDLVVSASL---------DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (916)
Q Consensus 143 ~~p~~~~l~s~s~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 213 (916)
. .|+.|++++. |.-|+|||++..+.....+. ..+-.-+.|+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~----------------------------~~~P~flrf~ 274 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF----------------------------PYGPQFLRFH 274 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc----------------------------ccCchhhhhc
Confidence 4 6889999874 56689999998775543221 1112456777
Q ss_pred CCC-CEEEEEECCCcEEEEEC---CCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 002490 214 PTL-PLIVSGADDRQVKLWRM---NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (916)
Q Consensus 214 p~~-~~l~~~~~dg~v~iwd~---~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd 276 (916)
|.- ..+++++..|+..+-|. .+... .+.........+..+.++++++.++.+..+|.|.+|.
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCcc-ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 753 46788888999999983 33321 1333344445699999999999999999999999997
No 330
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.43 E-value=0.00036 Score=77.66 Aligned_cols=265 Identities=9% Similarity=0.005 Sum_probs=153.3
Q ss_pred CCEEEEEECCCeEEEEECCCCeeEEEEecCCC----------CEE-EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE
Q 002490 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD----------YIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (916)
Q Consensus 63 ~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~----------~v~-~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 131 (916)
+..+.+++.++.+.-+|.++|+.+........ .+. .+.. .+..++.++.++.+..+|.++|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 45677777889999999999998876542221 000 0111 2446777888999999999999988877
Q ss_pred eCCCCceEE-EEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEE
Q 002490 132 TGHNHYVMC-ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (916)
Q Consensus 132 ~~h~~~v~~-l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 210 (916)
.... .+.+ ... .+..+++++.++.+..+|..+++..-..+... ......+...++
T Consensus 147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~~~~~sP~--- 202 (394)
T PRK11138 147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV------------------PSLTLRGESAPA--- 202 (394)
T ss_pred cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC------------------CcccccCCCCCE---
Confidence 5432 2221 112 24567778889999999998877654322100 000000111111
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCC--C---CeEEEEEcc--CCCEEEEEeCCCcEEEEECCCCcee
Q 002490 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM--N---NVSCVMFHA--KQDIIVSNSEDKSIRVWDVTKRTGV 283 (916)
Q Consensus 211 ~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~---~v~~l~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~ 283 (916)
.. +..++.++.+|.+..+|..+++..-........ . ....+.-+| .+..++.++.+|.+..+|..+++.+
T Consensus 203 -v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 203 -TA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred -EE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 11 234666777888888888877641111111000 0 001111122 3456777788999999999999877
Q ss_pred EEeeccCC--cE----EEEEEecCCCeEEEEeCCCceEEEecCCc----ceEEecCCEEEEE-eCCeEEEEEccCCceee
Q 002490 284 QTFRREHD--RF----WILASHPEMNLLAAGHDSGMIVFKLERER----PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQ 352 (916)
Q Consensus 284 ~~~~~~~~--~i----~~l~~sp~~~~la~g~~~~~~v~~~~~~~----~~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~ 352 (916)
........ .+ .-...+.++.+.+.-..+|..+|+..... ......++.+++. .++.+...|..+++.+.
T Consensus 280 W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 65432111 00 01122345555555555666677654311 1122356777777 88999999999998766
Q ss_pred eEEe
Q 002490 353 VIPI 356 (916)
Q Consensus 353 ~~~~ 356 (916)
...+
T Consensus 360 ~~~~ 363 (394)
T PRK11138 360 QQKV 363 (394)
T ss_pred EEEc
Confidence 5544
No 331
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=3.9e-07 Score=90.58 Aligned_cols=126 Identities=22% Similarity=0.334 Sum_probs=104.1
Q ss_pred cCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----ceEEEecccccCEEEEEEec-CCCEEEEEECCCeEEEEECC
Q 002490 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYK 81 (916)
Q Consensus 8 h~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~-----~~~~~~~~h~~~V~~i~fsp-~~~~l~s~~~dg~I~vWd~~ 81 (916)
.++.|.++.|+..++++..|+.+|.|..+|++.+ .+.+++ -|+..|+++..-. ++++|++.+-+|+|++||.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3567888899999999999999999999999865 344555 4999999998877 78899999999999999998
Q ss_pred CCee---EEEEecCCCCEEEEEE--cCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCC
Q 002490 82 MHRC---LFTLLGHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134 (916)
Q Consensus 82 ~~~~---~~~l~~h~~~v~~v~f--s~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h 134 (916)
--++ +.++.||...-.-+-+ ++....++++++|...|||.+.++..+.+++..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666 8888998775444443 455668999999999999999999999888643
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.40 E-value=0.0001 Score=77.52 Aligned_cols=284 Identities=11% Similarity=0.050 Sum_probs=140.8
Q ss_pred EEEcCCCCEEEEEEC---CCcEEEEECCCCcceeeeeeecCC-CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE
Q 002490 210 AAFHPTLPLIVSGAD---DRQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (916)
Q Consensus 210 ~~~~p~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 285 (916)
=+|.++|+.|+.+++ ...+.+.|+.+++. ..+.... .......++|+.+.++-......|+-.|+.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i---~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEI---TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EE---EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEE---EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 367889987777665 45677788888885 3333222 2222466778888887766667899999999887666
Q ss_pred eeccCCcEEEEEEe--cCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEE-eCCeEEEEEccCCceeeeEEecCCCCC
Q 002490 286 FRREHDRFWILASH--PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST 362 (916)
Q Consensus 286 ~~~~~~~i~~l~~s--p~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~ 362 (916)
+..+.+..-...|. .++..++ |....-.-|....... ... .++.+ ....|..-|+.+|+...++.-..
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~---~f~-e~~~a~p~~~i~~idl~tG~~~~v~~~~~---- 188 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWK---GFR-EFYEARPHCRIFTIDLKTGERKVVFEDTD---- 188 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHH---HHH-HHHHC---EEEEEEETTT--EEEEEEESS----
T ss_pred EECCcccccccceeeCCCccEEE-EEEEeehhccCccccH---HHH-HHHhhCCCceEEEEECCCCceeEEEecCc----
Confidence 66666655445554 3344433 2210000000000000 000 01111 34566777888888777666443
Q ss_pred CCCcCCeEEEEcCCCCEEEEEEc-C-CCC-EEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcC-----CC
Q 002490 363 SLNQSPRTLSYSPTENAVLICSD-V-DGG-SYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKS-----SN 434 (916)
Q Consensus 363 ~~~~~i~~l~~sp~~~~llv~~~-~-~~g-~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~-----d~ 434 (916)
.+..+.|||....+++-+- . -+. .-+||.+..................+..=-|++||..+...+. +.
T Consensus 189 ----wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 189 ----WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp -----EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred ----cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 6778999998776665543 1 111 2368888766543322111122233455678899977766432 34
Q ss_pred EEEEEccCCceEEEeeCCCceeEEEEeCCceEEEE--EC----------------CEEEEEEcCCCeEEEEEEc------
Q 002490 435 QVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR--AE----------------DRVVIFDLQQRLVLGDLQT------ 490 (916)
Q Consensus 435 ~I~iwdl~~~~~~~i~~~~~v~~l~~s~~g~~l~~--~d----------------~~v~l~d~~~~~~~~~~~~------ 490 (916)
.|.-+|+.+...+.+..-.....+..++||++++- ++ --|++++++.++.......
T Consensus 265 ~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v 344 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKV 344 (386)
T ss_dssp EEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------
T ss_pred EEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCccee
Confidence 56667777543333222225677888899999986 21 1567788888775432221
Q ss_pred ------CCeeEEEEcCCCCEEEEEe
Q 002490 491 ------PFVKYVVWSNDMESVALLS 509 (916)
Q Consensus 491 ------~~v~~v~~s~d~~~la~~~ 509 (916)
..--.+.|||||++|+..+
T Consensus 345 ~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 345 LDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp BTTBSSTT----EE-TTSSEEEEEE
T ss_pred ecCCCccCCCCCccCCCCCEEEEEC
Confidence 1234789999999999888
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.39 E-value=0.00011 Score=75.57 Aligned_cols=182 Identities=8% Similarity=-0.072 Sum_probs=113.1
Q ss_pred CCCeEEEEECCCCeeEEEEecC--CCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCC
Q 002490 71 DDYKIKVWNYKMHRCLFTLLGH--LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148 (916)
Q Consensus 71 ~dg~I~vWd~~~~~~~~~l~~h--~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 148 (916)
++|+|..||..+|+.+....-. .....+. ..+++..+++++.++.|..||..+|+.+..... ...+.... ...+.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 4789999999999999887531 1222221 333556788888999999999999999888774 22221111 22456
Q ss_pred EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEecc--C-CCeeEEEEcCCCCEEEEEECC
Q 002490 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH--D-RGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 149 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~~~~~p~~~~l~~~~~d 225 (916)
.+++++.++.++.+|..+++..... .... . ...........+..++++..+
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSI--------------------------YLTSSPPAGVRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEE--------------------------EE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred ccccccceeeeEecccCCcceeeee--------------------------ccccccccccccccCceEecCEEEEEecc
Confidence 7777778899999998887754321 0111 0 111112222236788888889
Q ss_pred CcEEEEECCCCcceeeeeeecCCCC----------eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeE
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNN----------VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~----------v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 284 (916)
+.|..+|..+++. +......... +.+-....++ .++.++.++.+..+|+.+++.+.
T Consensus 132 g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 132 GKLVALDPKTGKL--LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp SEEEEEETTTTEE--EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred CcEEEEecCCCcE--EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 9999999999986 3333332211 1222222244 67777777754444998888554
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=6.5e-06 Score=92.16 Aligned_cols=186 Identities=10% Similarity=0.098 Sum_probs=142.6
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v 99 (916)
+...++.|+....+..+|+++.+..+...-..+.|+-|+ .+++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677777778899999999888877765555566555 477899999999999999999999999999999999875
Q ss_pred EEcCCCCEEEEEEC---------CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcc
Q 002490 100 QFHHEYPWIVSASD---------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRK 169 (916)
Q Consensus 100 ~fs~~~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~ 169 (916)
.. .|+.|++|+. |.-|+|||++..+.+..+.-+.++ .-+.|+|.- ..+++++..|...+-|..+...
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 54 5778888876 456899999987777666655554 447788864 4788889999999998544222
Q ss_pred eeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEEC
Q 002490 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (916)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~ 233 (916)
... -.+........+..+.++++++.++.|..+|.|.+|.-
T Consensus 301 P~~-----------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPA-----------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred Ccc-----------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 110 11223334556899999999999999999999999973
No 335
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.37 E-value=1.1e-06 Score=95.34 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=135.3
Q ss_pred ccHHHHHhhhccCcccchhHHH------------------HHHHCCCchhhcccccC---cchhhhhhhhcCCHHHHHHH
Q 002490 608 KRYDHVMSMIRNSQLCGQAMIA------------------YLQQKGFPEVALHFVKD---ERTRFNLALESGNIQIAVAS 666 (916)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~i~~------------------~l~~~~~~e~al~~~~~---~~~~f~lal~~g~~~~A~~~ 666 (916)
.+++.|+..+++..-.|..|-- .|+..|..+.|...+-. .....+.|+-...|..|+.+
T Consensus 675 ~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~i 754 (1636)
T KOG3616|consen 675 HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISI 754 (1636)
T ss_pred hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhH
Confidence 4666777777766544433211 34555555665543322 22356778888888889888
Q ss_pred HHHcCCHH----HHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHH----H
Q 002490 667 AKEIDEKD----HWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHN----A 738 (916)
Q Consensus 667 a~~~~~~~----~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~----~ 738 (916)
+..+++.+ .+-.+|+++.+.|++++||+.|.+.+-+..+..+|-..|.++.+-|+++-+..+......+.. .
T Consensus 755 ldniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 755 LDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDL 834 (1636)
T ss_pred HHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhH
Confidence 88776533 578899999999999999999999999999999999999999999998776655555443333 2
Q ss_pred HhcCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCC
Q 002490 739 LYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDN 783 (916)
Q Consensus 739 ~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~ 783 (916)
-..|++.||.++|...|.+++|+.|++.||++++..++.++.-++
T Consensus 835 dehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 348999999999999999999999999999999999999886644
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=0.00015 Score=80.89 Aligned_cols=235 Identities=7% Similarity=0.036 Sum_probs=147.5
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceeEEeeccC-CcEEEEEEe--cCCCeEEEEeCCCceEEEecCCcceEEecCCEEEE
Q 002490 259 KQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREH-DRFWILASH--PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (916)
Q Consensus 259 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s--p~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~ 334 (916)
||++|+.... +..|...++...++-+.+..++ ..+..+.+- |+..++.+++.-.+ .+..+|..+..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~----------PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRI----------PLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCccccc----------ccCCCCCEeec
Confidence 6788888764 5566666666655544433222 223344443 66666666553222 33344544433
Q ss_pred E--eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEc-C-CCCEEEEEEeeCCCCCCCcccccc
Q 002490 335 A--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD-V-DGGSYELYVIPKDSIGRGDSVQDA 410 (916)
Q Consensus 335 ~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~-~-~~g~i~i~~~~~~~~~~~~~~~~~ 410 (916)
. ..+.+.+.|..+.+....+.+.. .+..+.++|+|+++.+++. + .+..+..-+. .....+. .+..
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vdg--------npd~v~~spdGk~afvTsyNsE~G~tl~em~a--~e~d~~v-vfni 278 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVDG--------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--AERDWVV-VFNI 278 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeCC--------CcccceECCCCCEEEEeccCcccCcceeeecc--ccCceEE-EEch
Confidence 3 56777888888765555554443 6677999999999887752 1 2222222221 1110000 0000
Q ss_pred ccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC------ceEEEeeCCCceeEEEEeCCceEEEE---ECCEEEEEEcCC
Q 002490 411 KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN------EVVKKSILPIAADAIFYAGTGNLLCR---AEDRVVIFDLQQ 481 (916)
Q Consensus 411 ~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~------~~~~~i~~~~~v~~l~~s~~g~~l~~---~d~~v~l~d~~~ 481 (916)
.. .-++.++|++...+ ++.|.+.|... ..+..+..+.....+.+||||++++. .+.+|.|+|+++
T Consensus 279 ~~----iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 279 AR----IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred HH----HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00 01345678877763 68899999886 35667777779999999999999988 467999999988
Q ss_pred CeE------------EEEEE-cCCeeEEEEcCCCCEEEEEe-CCeEEEEecCC
Q 002490 482 RLV------------LGDLQ-TPFVKYVVWSNDMESVALLS-KHAIIIASKKL 520 (916)
Q Consensus 482 ~~~------------~~~~~-~~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~ 520 (916)
.+. +.++. +.......|+++|....+.. +..+..||...
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 663 55555 35667899999998666666 88999999775
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3e-05 Score=79.25 Aligned_cols=240 Identities=17% Similarity=0.257 Sum_probs=137.2
Q ss_pred EEEEECCCCcceeeeeeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCC-eE
Q 002490 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LL 305 (916)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~-~l 305 (916)
+++.+..+.+. ...+.++...|..++|+|..+ ++..++.+..|.|.|+.+...+..+..+ ..+|+++|.-+.. ++
T Consensus 175 v~~l~~~~fks--sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKS--SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcch--hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 66666655554 556778888999999999877 7888999999999999999998888866 7899999998765 55
Q ss_pred EEEeCCC-ceEEEecCCcc-------------eEE---------ecCCEEEEEeCCeEEEEEccCCc--eeeeEEecCCC
Q 002490 306 AAGHDSG-MIVFKLERERP-------------AFA---------VSGDSLFYAKDRFLRYYEFSTQK--DTQVIPIRRPG 360 (916)
Q Consensus 306 a~g~~~~-~~v~~~~~~~~-------------~~s---------~~~~~l~~~~d~~i~~~d~~~~~--~~~~~~~~~~~ 360 (916)
.+|..+| +.+|++..... ... .....++++.--.+.+|++.... ...+..+..+|
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCc
Confidence 6676555 45677765432 110 11122333333345566655422 22233333221
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEcCCCCE-----E----------EEEEeeCCCCCCCccccccccCceeEEEEEeCCc
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGS-----Y----------ELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNR 425 (916)
Q Consensus 361 ~~~~~~~i~~l~~sp~~~~llv~~~~~~g~-----i----------~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~ 425 (916)
...++++.+..++++++...+... + .+|.......+.. ....+ .-..+.-++++.
T Consensus 332 ------~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~--~~kl~--t~~ai~~~~~nn 401 (463)
T KOG1645|consen 332 ------ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSK--QTKLS--TTQAIRAVEDNN 401 (463)
T ss_pred ------ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCc--ccccc--cccceecccccc
Confidence 566777778778888877642210 0 1111100000000 00000 001111234444
Q ss_pred EEE-EEcCCCEEEEEccC-CceEEEeeCCCceeEEEEeCC--ceEEEE-ECCEEEEEEcC
Q 002490 426 FAV-LDKSSNQVLVKNLK-NEVVKKSILPIAADAIFYAGT--GNLLCR-AEDRVVIFDLQ 480 (916)
Q Consensus 426 ~l~-~~~~d~~I~iwdl~-~~~~~~i~~~~~v~~l~~s~~--g~~l~~-~d~~v~l~d~~ 480 (916)
+++ +++..+.+.+||.. .+.++++....+|.++++... +.+|+. ++..+.||..+
T Consensus 402 ~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEEEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 433 33344677777776 355666666666666665543 445554 66677766543
No 338
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=2.2e-06 Score=59.38 Aligned_cols=39 Identities=31% Similarity=0.717 Sum_probs=37.1
Q ss_pred CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 125 RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 125 ~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd 163 (916)
++++.++.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00021 Score=78.60 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=86.3
Q ss_pred cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q 002490 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 282 (916)
+...|.--+++.++++++.|++-|.+++|+...+... .....+..+.+..+..|++..++|.|+..|.|.++-+.++.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3445556677888999999999999999998887642 233333556677788899999999999999999998876433
Q ss_pred eEE------eeccCCcEEEEEEecCCCeEEEEeCCCceEE
Q 002490 283 VQT------FRREHDRFWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 283 ~~~------~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
... -+.|..+|++++|++++..+.+|.+.|.++.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 211 1235678999999999999999998776654
No 340
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.25 E-value=0.0018 Score=71.99 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHH------HHHHcCCchhHHHHHHhcCCHHHHHH
Q 002490 676 WYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLK------IAEVKNDVMGQFHNALYLGDVKERVK 749 (916)
Q Consensus 676 w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~------~~~~~~~~~~~~~~~~~~g~~~ea~~ 749 (916)
....|.++...|.+..|..+|+.++.|+.+.-+...+.+.+ .+..++ .-+.|+-....-....|+.+..+|+-
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~eava 1016 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVA 1016 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHH
Confidence 33446666667778888888888888888877665544433 222211 11344344444456789999999999
Q ss_pred HHHHcCCchHHHHHHHhcCChHHHHHH
Q 002490 750 ILESAGHLPLAYITASVHGLQDVAERL 776 (916)
Q Consensus 750 ~~~~~g~~~~A~~~a~~~g~~~~a~~l 776 (916)
++++..++.+|+..|+..++.+....+
T Consensus 1017 ~~ckgs~y~ea~~~a~~s~~~e~~k~~ 1043 (1243)
T COG5290 1017 MDCKGSEYREAFCEAMVSRLVESEKHY 1043 (1243)
T ss_pred HHcccccchHHHHHHHHhhhhhHHHHh
Confidence 999999999999999999987744433
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.21 E-value=0.00085 Score=73.05 Aligned_cols=274 Identities=11% Similarity=0.101 Sum_probs=140.9
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC--------
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-------- 82 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~-------- 82 (916)
.|+.++|.++..-|++|..+|.|.||.+...+.-. ..-..+-....|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 68999999998899999999999999986543322 000011111111110 00111122223321
Q ss_pred -CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe--C------CCCceEEEEEec-----CC-
Q 002490 83 -HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--G------HNHYVMCASFHP-----KE- 147 (916)
Q Consensus 83 -~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~------h~~~v~~l~~~p-----~~- 147 (916)
..+..-+....++|++++.|.-| +++.|..+|.+.|.|++....+..-. . ....|+++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12333445568899999998555 89999999999999998888776532 2 335688888863 22
Q ss_pred --CEEEEEECCCeEEEEECCC-CcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEE-EcCC--------
Q 002490 148 --DLVVSASLDQTVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA-FHPT-------- 215 (916)
Q Consensus 148 --~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~p~-------- 215 (916)
-.+++|+..|.+.+|.+-- ...... .........+..+|..+. ++.+
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~---------------------v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At 212 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFS---------------------VQFAGATTNHDSPILSIIPINADTGESALAT 212 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EE---------------------EEEEEEE--SS----EEEEEETTT--B-B-B
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceE---------------------EEEeeccccCCCceEEEEEEECCCCCcccCc
Confidence 3789999999999998742 111000 000011122333333333 2111
Q ss_pred ------------CCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEE-----ccCCCEEEEEeCCCcEEEEECC
Q 002490 216 ------------LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF-----HAKQDIIVSNSEDKSIRVWDVT 278 (916)
Q Consensus 216 ------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~-----sp~~~~l~s~~~dg~i~vwd~~ 278 (916)
-+-+++...+..++++...+.+. ........-....+.+ ...+..|++-..+|.|+++.+.
T Consensus 213 ~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~--~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 213 ISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG--AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp HHHHHGGGGT----EEEEEE-SSEEEEE-TT---E--EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred hhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc--cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 11244445578899999888775 3222222122333444 2356778888999999999999
Q ss_pred CCceeEEeeccC----CcEEEEEEecCCCeEEEEeCCCceEE
Q 002490 279 KRTGVQTFRREH----DRFWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 279 ~~~~~~~~~~~~----~~i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
.-+.+...+... ..+...+++++|..+...+...+.++
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred CchHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence 988887776532 23344566777777766655444433
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00022 Score=78.49 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=108.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-EeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcce
Q 002490 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 92 h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
+...|.--++...+++++.|+.-|.+++|+-..+..... ..+-.+.+.....+++..+++.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445566667788889999999999999999766654332 2234455667778888889999999999999988763221
Q ss_pred eccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc--eeeeeeecCC
Q 002490 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTLRGHM 248 (916)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~ 248 (916)
... .+...-..|...|++++|++++..+.+|...|+|..-.+..... .....+-.-.
T Consensus 112 ~~~---------------------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 112 DLD---------------------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred cce---------------------eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 100 01111223788999999999999999999999999988877211 1133333445
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 002490 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (916)
Q Consensus 249 ~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 279 (916)
+.|-.+.+. ++.+|++... . ..++++..
T Consensus 171 s~IVQlD~~-q~~LLVStl~-r-~~Lc~tE~ 198 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLT-R-CILCQTEA 198 (726)
T ss_pred cceEEeecc-cceehHhhhh-h-hheeecch
Confidence 666555554 3333443332 2 23445443
No 343
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.19 E-value=0.0019 Score=67.97 Aligned_cols=249 Identities=13% Similarity=0.185 Sum_probs=140.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee---ccC
Q 002490 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---REH 290 (916)
Q Consensus 214 p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~ 290 (916)
..++.|+.|+++| +.+++...... ..... +...|..+...|+-+.+++-+ |+.++++++.......... ...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--PTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--ceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3567899999888 89999833222 11211 223499999999888777775 4999999988655433211 000
Q ss_pred CcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCC-----ceeeeEEecCCCCCCCC
Q 002490 291 DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ-----KDTQVIPIRRPGSTSLN 365 (916)
Q Consensus 291 ~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~ 365 (916)
....... .....++..|... ........|+++..+.+.+|.+... +....+.++.
T Consensus 80 ~~~~~~~---------~~~~~~v~~f~~~----~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~------- 139 (275)
T PF00780_consen 80 SRSLPTK---------LPETKGVSFFAVN----GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD------- 139 (275)
T ss_pred ccccccc---------ccccCCeeEEeec----cccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC-------
Confidence 0000000 0001111111100 0001122344456668888888763 2233333332
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccc--------cCceeEEEEEeCCcEEEEEcCCCEEE
Q 002490 366 QSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAK--------KGLGGSAIFIARNRFAVLDKSSNQVL 437 (916)
Q Consensus 366 ~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--------~~~i~~~~fs~~~~~l~~~~~d~~I~ 437 (916)
.+.+++|.+ +.++++.. ..+.+.++.......+....... ......+.-.+++.+|++- +..-.
T Consensus 140 -~~~~i~~~~--~~i~v~~~---~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 140 -PPSSIAFLG--NKICVGTS---KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGV 211 (275)
T ss_pred -CcEEEEEeC--CEEEEEeC---CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEE
Confidence 889999994 47777765 57888888755443322111100 1112223333456677654 34555
Q ss_pred EEccCCceEE--EeeCCCceeEEEEeCCceEEEEECCEEEEEEcCCCeEEEEEEcCCeeEE
Q 002490 438 VKNLKNEVVK--KSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYV 496 (916)
Q Consensus 438 iwdl~~~~~~--~i~~~~~v~~l~~s~~g~~l~~~d~~v~l~d~~~~~~~~~~~~~~v~~v 496 (916)
+.|..|...+ .+.-+..+..+++... -+++..++.|.||++.+++.++.+....++.+
T Consensus 212 fv~~~G~~~r~~~i~W~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWSSAPQSVAYSSP-YLIAFSSNSIEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred EEcCCCCcCcccEEEcCCchhEEEEECC-EEEEECCCEEEEEECcCCcEEEEEECCCEEEE
Confidence 5667765443 5555556777777654 44455778899999999999999987666544
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=0.021 Score=62.62 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=67.4
Q ss_pred EEEEccCCc-----eEEEeeCCCceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEcCCeeEEEEcCCCCEEEEE
Q 002490 436 VLVKNLKNE-----VVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALL 508 (916)
Q Consensus 436 I~iwdl~~~-----~~~~i~~~~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~~~v~~v~~s~d~~~la~~ 508 (916)
-.+|+.... .+.++..+..+.+.+++|+...|+. .||.|.+||...+.....-..-.+..++|.|+|..++++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEE
Confidence 355666532 2345666778999999999766665 899999999887755544334457889999999999999
Q ss_pred e-CCeEEEEecCCcce
Q 002490 509 S-KHAIIIASKKLVHQ 523 (916)
Q Consensus 509 ~-~~~i~i~~~~~~~~ 523 (916)
+ ++.+.+||..+..+
T Consensus 318 s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 318 SEQGELQCFDMALSPI 333 (545)
T ss_pred cCCceEEEEEeecCcc
Confidence 9 68999999987664
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.15 E-value=0.0077 Score=62.47 Aligned_cols=271 Identities=13% Similarity=0.095 Sum_probs=161.5
Q ss_pred CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEEC----------CCeEEEEECCCCeeEEEEecCCC------
Q 002490 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD----------DYKIKVWNYKMHRCLFTLLGHLD------ 94 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~----------dg~I~vWd~~~~~~~~~l~~h~~------ 94 (916)
+.+.|+|..+++.+..+.. +-.-.+..+|+++.+.+++. .-.|.+||.++-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 22334678999998887642 33799999999888776542221
Q ss_pred -CEEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCcce
Q 002490 95 -YIRTVQFHHEYPWIVSAS--DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 95 -~v~~v~fs~~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
.....+++.|+++++... -...|.|.|+..++.+..+.... |....|.+ +.+.+.|.||++....+...-+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 223467888999777653 35679999999999888776332 22223333 46888899999999998743222
Q ss_pred eccCCccceeeccccccccccccceEEEEEeccCC-CeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecC--
Q 002490 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-- 247 (916)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-- 247 (916)
.... ...+..... -+..-++...+..++..+.+|.|+--|+..........+.--
T Consensus 171 ~~~~----------------------t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 171 AQKS----------------------TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEE----------------------EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred eEee----------------------ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 1110 001111111 122334444445555566778777777766553222222110
Q ss_pred --------CCCeEEEEEccCCCEEEEEeC---CC-------cEEEEECCCCceeEEeeccCCcEEEEEEecCCC-eEEEE
Q 002490 248 --------MNNVSCVMFHAKQDIIVSNSE---DK-------SIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LLAAG 308 (916)
Q Consensus 248 --------~~~v~~l~~sp~~~~l~s~~~---dg-------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~-~la~g 308 (916)
.+.-.-+++++..+.|++--. ++ .|.++|+.+++.+..+... ..+.+|+.+.+.+ +|.+.
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEE
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEE
Confidence 111223677876666655321 22 3888899999998888753 3466788877655 33222
Q ss_pred eCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEE
Q 002490 309 HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (916)
Q Consensus 309 ~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~ 355 (916)
+. .++.+.+||..+++.+..+.
T Consensus 308 ~~-------------------------~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 308 SA-------------------------GDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ET-------------------------TTTEEEEEETTT--EEEEE-
T ss_pred cC-------------------------CCCeEEEEeCcCCcEEeehh
Confidence 21 35778999999987765543
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.13 E-value=0.0024 Score=72.80 Aligned_cols=288 Identities=13% Similarity=0.134 Sum_probs=155.8
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEeccccc------CE--EEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecC
Q 002490 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG------PV--RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH 92 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~------~V--~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h 92 (916)
+..+.+++.++.|.-.|.++|+.+-+++.... .+ ..+... ++..++.++.++.|.-+|.++|+.+......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566777889999999999998887754332 11 111111 2257778888999999999999998876533
Q ss_pred CCC-----EE-EEEEcCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEEeCCCCc--------------------
Q 002490 93 LDY-----IR-TVQFHHEYPWIVSAS---------DDQTIRIWNWQSRTCISVLTGHNHY-------------------- 137 (916)
Q Consensus 93 ~~~-----v~-~v~fs~~~~~l~s~s---------~dg~I~iwd~~~~~~~~~~~~h~~~-------------------- 137 (916)
... +. ...+. + ..++.++ .++.+..+|..+|+.+.........
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 11 11122 2 3444443 3678999999999988876532110
Q ss_pred e-EEEEEecCCCEEEEEECCC------------------eEEEEECCCCcceeccCCccceeeccccccccccccceEEE
Q 002490 138 V-MCASFHPKEDLVVSASLDQ------------------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (916)
Q Consensus 138 v-~~l~~~p~~~~l~s~s~dg------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (916)
+ .+.++.+.+..++.++.++ .|.-+|..+++..-...... ...+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~--------~~~~--------- 280 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP--------HDLW--------- 280 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC--------CCCc---------
Confidence 1 1234444566788887665 67777877766543221100 0000
Q ss_pred EEeccCCCee-EEEEcCCC---CEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEe-------
Q 002490 199 VLEGHDRGVN-WAAFHPTL---PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS------- 267 (916)
Q Consensus 199 ~~~~~~~~v~-~~~~~p~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~------- 267 (916)
.+.....++. .+. .-++ ..+++++.+|.+...|..+++. +...... ...++.+| ..++.++
T Consensus 281 ~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~--~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 281 DYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKL--ISARPEV---EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcE--eeEeEee---ccccccCC--ceEEEccccccccC
Confidence 0000000000 000 0122 2577788899999999999886 3222110 01133344 2333322
Q ss_pred -----------CCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCC--cceEEecCCEEEE
Q 002490 268 -----------EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE--RPAFAVSGDSLFY 334 (916)
Q Consensus 268 -----------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~--~~~~s~~~~~l~~ 334 (916)
.+|.+.-.|+.+++.+.+......+.. |..... .......++.+++
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~---------------------~~~g~~~~~~~~~~~g~~v~~ 411 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDS---------------------WNIGFPHWGGSLATAGNLVFA 411 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccc---------------------cccCCcccCcceEecCCeEEE
Confidence 234455555555554443332100000 000000 0112345566777
Q ss_pred E-eCCeEEEEEccCCceeeeEEec
Q 002490 335 A-KDRFLRYYEFSTQKDTQVIPIR 357 (916)
Q Consensus 335 ~-~d~~i~~~d~~~~~~~~~~~~~ 357 (916)
. .++.++.+|..+|+.+-...+.
T Consensus 412 g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 412 GAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred ECCCCeEEEEECCCCceeeEEECC
Confidence 6 8899999999999887776654
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.011 Score=57.40 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=100.6
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEE
Q 002490 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~ 100 (916)
..+++.|++.+.+.--|..+|+++.+-. -..+|.+-+.- -|.+++.|+..|.+++-+.++|.....+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678899999999999999998876432 22333333222 466799999999999999999987776653222112234
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 101 fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
..+++..+..++.|++.+..|..+..++...+...+...+-+..|-...|..+...|.|.--..+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 56788899999999999999999999998877555444455556633445555556655544443
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.09 E-value=0.004 Score=68.91 Aligned_cols=244 Identities=10% Similarity=0.049 Sum_probs=130.0
Q ss_pred eEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-------eCCCCceEEEEEecC
Q 002490 74 KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-------TGHNHYVMCASFHPK 146 (916)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------~~h~~~v~~l~~~p~ 146 (916)
.|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||+++++|+.... ...+ .-....+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 58899865 66777665445899999999865 46677789999999986333 1111 111122222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCcce-eccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC
Q 002490 147 EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 147 ~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 225 (916)
| ++.-..++.+.+..-...... ...+ . ..+. ......+........++.+....+....+
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~--~----------~p~~-----~~~~~~~~~~~~i~~l~~~~~~~i~~~~g 199 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLP--E----------IPGL-----WTKFHWWPSWTVIPLLSSDRVVEILLANG 199 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccc--c----------CCCc-----ccccccccccccceEeecCcceEEEEecC
Confidence 4 333334555444322211100 0000 0 0000 00000011100013345555555555566
Q ss_pred CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc-CCcEEEEEEecCCCe
Q 002490 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNL 304 (916)
Q Consensus 226 g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~~~~ 304 (916)
+.+.+.+....+. + ...+++..++.||+++++|.-..+|.+.+....-.+.+..+... ......+.|.-+...
T Consensus 200 ~~i~~i~~~~~~~-----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 200 ETIYIIDENSFKQ-----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CEEEEEEcccccc-----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 6666544333211 1 12468999999999999999999999999987666666666544 345677888766443
Q ss_pred EEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEcc
Q 002490 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (916)
Q Consensus 305 la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~ 346 (916)
++. ..+.+.++........+..++...+...-..+++..-.
T Consensus 274 ~l~-~~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG~riit~~ 314 (410)
T PF04841_consen 274 VLS-WEDELLLVGPDGDSISFWYDGPVILVSEIDGVRIITST 314 (410)
T ss_pred EEE-eCCEEEEECCCCCceEEeccCceEEeccCCceEEEeCC
Confidence 333 24555555544444444444443333333335555433
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00016 Score=79.39 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=110.7
Q ss_pred CeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeE
Q 002490 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS 417 (916)
Q Consensus 338 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~ 417 (916)
..+.++++.+++...+..... .-...+|+|||+.++++.. .+|...||.++-...... .+....+.-..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g--------~~~~P~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~~~--~Lt~~~gi~~~ 286 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG--------NNGAPAFSPDGSKLAFSSS-RDGSPDIYLMDLDGKNLP--RLTNGFGINTS 286 (425)
T ss_pred ceEEEEeccCCccceeeccCC--------ccCCccCCCCCCEEEEEEC-CCCCccEEEEcCCCCcce--ecccCCccccC
Confidence 458889999988777776544 4456799999999999887 447777777654433211 23333344447
Q ss_pred EEEEeCCcEEEEEcCC-C--EEEEEccCCceEEEeeCCC-ceeEEEEeCCceEEEEE---CCE--EEEEEcCCCeEEEEE
Q 002490 418 AIFIARNRFAVLDKSS-N--QVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA---EDR--VVIFDLQQRLVLGDL 488 (916)
Q Consensus 418 ~~fs~~~~~l~~~~~d-~--~I~iwdl~~~~~~~i~~~~-~v~~l~~s~~g~~l~~~---d~~--v~l~d~~~~~~~~~~ 488 (916)
-.|+|||+.++..+.. | .|.+++.++.....+.... .-..-.+||||++++.. ++. |.++|+.++..+..+
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 7899999998888632 2 6788888877666666555 23367799999999873 343 777888777654444
Q ss_pred Ec-CCeeEEEEcCCCCEEEEEe
Q 002490 489 QT-PFVKYVVWSNDMESVALLS 509 (916)
Q Consensus 489 ~~-~~v~~v~~s~d~~~la~~~ 509 (916)
.. .....-.|.++++++...+
T Consensus 367 t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 367 TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cccccCCCCCcCCCCceEEEec
Confidence 43 3344677888888887665
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.00 E-value=0.0067 Score=62.89 Aligned_cols=280 Identities=13% Similarity=0.125 Sum_probs=150.4
Q ss_pred CeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEEeCCCC------
Q 002490 73 YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD----------DQTIRIWNWQSRTCISVLTGHNH------ 136 (916)
Q Consensus 73 g~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~h~~------ 136 (916)
+++.|.|..+++.+..+.. +..-.+..+|+++.+++++. .-.|.+||.++-++...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998887753 34445778999998876542 33699999999988775542222
Q ss_pred -ceEEEEEecCCCEEEEEE--CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc
Q 002490 137 -YVMCASFHPKEDLVVSAS--LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (916)
Q Consensus 137 -~v~~l~~~p~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 213 (916)
....++++.+++++++.. --.+|.|.|+...+.....+. .++ +. ..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-----------------------------PGC-~~-iy 143 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-----------------------------PGC-WL-IY 143 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-----------------------------TSE-EE-EE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-----------------------------CCE-EE-EE
Confidence 122356777888666543 345688888877554322111 111 11 11
Q ss_pred CC-CCEEEEEECCCcEEEEECC-CCcceeeee--eecCCCC-eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEE--e
Q 002490 214 PT-LPLIVSGADDRQVKLWRMN-ETKAWEVDT--LRGHMNN-VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT--F 286 (916)
Q Consensus 214 p~-~~~l~~~~~dg~v~iwd~~-~~~~~~~~~--~~~~~~~-v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~ 286 (916)
|. ...+.+-|.||.+.-..+. .++.....+ +.....+ +..-++...+..++-.+.+|.|+--|+........ +
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 21 1346666778887777776 333311111 0111111 12233444555566577888888888775543221 1
Q ss_pred eccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCc
Q 002490 287 RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQ 366 (916)
Q Consensus 287 ~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 366 (916)
......-..-.|-|.|-.+.+.+...-.+|-+-...... .+.+ ....|.++|+.+++.+..+.+..
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g-sHKd-----pgteVWv~D~~t~krv~Ri~l~~-------- 289 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG-SHKD-----PGTEVWVYDLKTHKRVARIPLEH-------- 289 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT--TTS------EEEEEEEETTTTEEEEEEEEEE--------
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC-CccC-----CceEEEEEECCCCeEEEEEeCCC--------
Confidence 110000000123444433333332111111110000000 0000 12468888999999998888765
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 367 ~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
++.+|+.+.+.+-++++....++.+.+|+....
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 778999999998777665446689999998544
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.013 Score=64.39 Aligned_cols=252 Identities=14% Similarity=0.094 Sum_probs=165.6
Q ss_pred CEEEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEecccccCEEEEEEecCCC-EEEEEECCCeEEEEECCCCeeEEE
Q 002490 11 RVKGLSFHSKRPWILASLH-SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~-dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~-~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
....+...|++..+.+... ...+...+............-...-.+++.++.++ ..++...+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4556788888865554432 22466666542222221211113345778888887 556666678999999888887776
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE-CCCeEEEEEC
Q 002490 89 LLGHLDYIRTVQFHHEYPWIVSASD---DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI 164 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s-~dg~v~vwd~ 164 (916)
...-. ....++++++++.+..+.. ++++.+.|..+++.+.....-..+ ..+++.|+|..++.+. .+++|.+.|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 65323 6688999999987776655 689999999999888876543344 8899999999666554 7899999997
Q ss_pred CCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC---CcEEEEECCCCcceee
Q 002490 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEV 241 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---g~v~iwd~~~~~~~~~ 241 (916)
.+..... ... .....-...-..+.++|+|..+.+.... +.+...|..++.....
T Consensus 190 ~~~~v~~-~~~----------------------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 190 SGNSVVR-GSV----------------------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCcceec-ccc----------------------ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 6644331 000 0011122334568899999966665543 5888889888775222
Q ss_pred eeeecCCCCeEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeEEeec
Q 002490 242 DTLRGHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFRR 288 (916)
Q Consensus 242 ~~~~~~~~~v~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 288 (916)
....+.. ....+..+|+|..+.+... .+.+.+-|..+......+..
T Consensus 247 ~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 247 DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 1122222 4567899999999888844 47899999887776665543
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.95 E-value=0.0074 Score=68.90 Aligned_cols=250 Identities=10% Similarity=0.078 Sum_probs=142.6
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecccccC-----EE-EEEEecCCCEEEEEE---------CCCeEEEEECCCCeeE
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGP-----VR-GVHFHKSQPLFVSGG---------DDYKIKVWNYKMHRCL 86 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~-----V~-~i~fsp~~~~l~s~~---------~dg~I~vWd~~~~~~~ 86 (916)
..+++++.+|.|.-+|.++|+.+-+++..... +. +..+. + ..++.++ .++.+...|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888888999999999999999887643221 11 11222 2 3454543 3678999999999988
Q ss_pred EEEecCCCC--------------------E-EEEEEcCCCCEEEEEECCC------------------cEEEEeCCCCeE
Q 002490 87 FTLLGHLDY--------------------I-RTVQFHHEYPWIVSASDDQ------------------TIRIWNWQSRTC 127 (916)
Q Consensus 87 ~~l~~h~~~--------------------v-~~v~fs~~~~~l~s~s~dg------------------~I~iwd~~~~~~ 127 (916)
......... + ....+.+.+..++.++.++ .|.-.|..+|+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 776532110 1 1233444456677776554 799999999999
Q ss_pred EEEEeCCCCceE------EEEEe----cCCC---EEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccc
Q 002490 128 ISVLTGHNHYVM------CASFH----PKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (916)
Q Consensus 128 ~~~~~~h~~~v~------~l~~~----p~~~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (916)
+...+.-..... ...+. -++. .++.++.+|.+...|..+++..-.....
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------ 330 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------ 330 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------------------
Confidence 887642111110 01111 1232 6778888999999999988765432110
Q ss_pred eEEEEEeccCCCeeEEEEcCCCCEEEE------------------EECCCcEEEEECCCCcceeeeeeecCC------CC
Q 002490 195 VVKYVLEGHDRGVNWAAFHPTLPLIVS------------------GADDRQVKLWRMNETKAWEVDTLRGHM------NN 250 (916)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~~p~~~~l~~------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~ 250 (916)
...++.+| ..+.. ...+|.+.-.|+.+++..-......+. .+
T Consensus 331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011112 11111 123456666676666541111111000 11
Q ss_pred e--EEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEE-EEEecCCCeEEE
Q 002490 251 V--SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI-LASHPEMNLLAA 307 (916)
Q Consensus 251 v--~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~sp~~~~la~ 307 (916)
. ..+.. .+..+++++.||.|+.+|..+|+.+.+++....-... +.+..++++.+.
T Consensus 397 ~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 397 HWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVG 454 (488)
T ss_pred ccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEE
Confidence 1 11222 5678889999999999999999999887753322111 223345554443
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.90 E-value=0.0028 Score=64.01 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=113.2
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCC-CCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 88 TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 88 ~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
.+.+-...+..++|+|+.. ++++....+.|...+. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455566799999999866 4555556678888886 57788777533 3567889998777666655568999999985
Q ss_pred CCcceeccCCccceeeccccccccccccceEEEE--E-eccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC---Ccce
Q 002490 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV--L-EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE---TKAW 239 (916)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~---~~~~ 239 (916)
........ .....+. + ..+..++-.++|+|.++.|+++-...-..+|.+.. ....
T Consensus 95 ~~~~~~~~-------------------~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 95 DDTTSLDR-------------------ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp ---TT--E-------------------EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred ccccccch-------------------hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce
Confidence 42211100 0001111 1 13556789999999988888887776677776654 1111
Q ss_pred eeee------eecCCCCeEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeEEeeccC---------CcEEEEEEecCCC
Q 002490 240 EVDT------LRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREH---------DRFWILASHPEMN 303 (916)
Q Consensus 240 ~~~~------~~~~~~~v~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~l~~sp~~~ 303 (916)
.+.. .......++++.++|.. .+++.+.++..|..+| .+|+.+..+.... ...-.|++.++|+
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 1111 11234568899999964 5666667778888999 5677766655433 2467899999998
Q ss_pred eEEEEeCC
Q 002490 304 LLAAGHDS 311 (916)
Q Consensus 304 ~la~g~~~ 311 (916)
+.+++-.+
T Consensus 235 LYIvsEpN 242 (248)
T PF06977_consen 235 LYIVSEPN 242 (248)
T ss_dssp EEEEETTT
T ss_pred EEEEcCCc
Confidence 87776533
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0041 Score=67.80 Aligned_cols=290 Identities=11% Similarity=0.105 Sum_probs=134.0
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC--------
Q 002490 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-------- 124 (916)
Q Consensus 53 ~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-------- 124 (916)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-....|.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999886543322 0001111111111100 0011112233321
Q ss_pred -CeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEecc
Q 002490 125 -RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (916)
Q Consensus 125 -~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (916)
-.+...+....++|++++.+.- -++++|+.+|.+.|.|+++........... .......
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------~~~~~~~ 134 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------SFLSKSS 134 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------------T-SS-
T ss_pred ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccc-------------------ccccccc
Confidence 1234445556899999999844 499999999999999998865433211000 0000112
Q ss_pred CCCeeEEEEc-----CCC---CEEEEEECCCcEEEEECC--CCcceee---eeeecCCCCeEEEE-EccC-C--------
Q 002490 204 DRGVNWAAFH-----PTL---PLIVSGADDRQVKLWRMN--ETKAWEV---DTLRGHMNNVSCVM-FHAK-Q-------- 260 (916)
Q Consensus 204 ~~~v~~~~~~-----p~~---~~l~~~~~dg~v~iwd~~--~~~~~~~---~~~~~~~~~v~~l~-~sp~-~-------- 260 (916)
...++++.|. .|+ ..+++|+..|.+.+|.+. .+..+.+ .....+.+.|..+. ++.+ |
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS 214 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh
Confidence 2345556664 222 478899999999999874 2222211 11123455555544 3211 1
Q ss_pred -----------CEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecC
Q 002490 261 -----------DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSG 329 (916)
Q Consensus 261 -----------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~ 329 (916)
+-++....+..++++...+.+.........-....+.+-+-.. ...+
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~----------------------~~~~ 272 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTIS----------------------RNGG 272 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-----------------------EEEE
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecc----------------------cCCc
Confidence 1233334466799998887766554431111111122211000 0111
Q ss_pred CEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeC
Q 002490 330 DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (916)
Q Consensus 330 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~ 398 (916)
..|+.. .++.+++|.+..-+.+....+....... .+...+++++|..+..++. ..+.++.+-.
T Consensus 273 ~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~---~~~~ssis~~Gdi~~~~gp---sE~~l~sv~~ 336 (395)
T PF08596_consen 273 YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR---RLSSSSISRNGDIFYWTGP---SEIQLFSVWG 336 (395)
T ss_dssp EEEEEEETTSEEEEEETTT--EEEEEE-SS---HH---HHTT-EE-TTS-EEEE-SS---SEEEEEEEES
T ss_pred eEEEEEECCCcEEEEECCCchHhhcccCCCccccc---cccccEECCCCCEEEEeCc---ccEEEEEEEc
Confidence 223333 7899999999887766666654322211 4556788999997666654 4566665533
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.013 Score=61.61 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=137.7
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE----------
Q 002490 19 SKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT---------- 88 (916)
Q Consensus 19 p~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~---------- 88 (916)
..+++|++|+.+| +.+++........... +..+|..+...|+-+.|++-++ +.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccccc
Confidence 4578999999999 8999983333222222 3344999999998887777654 9999999875433331
Q ss_pred ----EecCCCCEEEEE--EcCCCCEEEEEECCCcEEEEeCCCC-----eEEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 89 ----LLGHLDYIRTVQ--FHHEYPWIVSASDDQTIRIWNWQSR-----TCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 89 ----l~~h~~~v~~v~--fs~~~~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
.......+...+ -...+...+.+....+|.+|.+... +....+. -...+.+++|. ++.++.|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc
Confidence 111223344444 1123333333444568999988653 3445554 34778899998 56788777554
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEE-EEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~ 236 (916)
..+.|+.++.......... ..... .......++..+.. +++.+|++ . +..-.+.+..+.
T Consensus 159 -f~~idl~~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~G~ 218 (275)
T PF00780_consen 159 -FYLIDLNTGSPSELLDPSD----------------SSSSFKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKNGE 218 (275)
T ss_pred -eEEEecCCCCceEEeCccC----------------CcchhhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCCCC
Confidence 8888988655443221100 00000 01111223333333 33455554 3 333344455443
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccC
Q 002490 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290 (916)
Q Consensus 237 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 290 (916)
.. ....+... ..+.++++. ..+|+..+. +.|-||++.+++.++++...+
T Consensus 219 ~~-r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 219 PS-RKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred cC-cccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 22 12233332 355566663 457777766 459999999999999887543
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.017 Score=63.98 Aligned_cols=209 Identities=12% Similarity=0.083 Sum_probs=114.8
Q ss_pred EEEEeCCCCEEEEEecC----------C-eEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 14 GLSFHSKRPWILASLHS----------G-VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 14 ~l~~sp~~~~la~~~~d----------g-~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
.++.+|.|.-+|....+ . .|+||+ ..|+++.++.--.+.|.++.|+.+.. |+....||.++++|+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-
Confidence 35667777777776433 1 599999 57888887764448999999988654 5566789999999987
Q ss_pred CeeEEEEe-------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEeCCCCceEE----------EEEe
Q 002490 83 HRCLFTLL-------GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVMC----------ASFH 144 (916)
Q Consensus 83 ~~~~~~l~-------~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~h~~~v~~----------l~~~ 144 (916)
|+..+.+. -....+....+..+| ++.-..++.+.+.+--... ....+..-...... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 33322221 111223333444455 3333445555444322211 11111100000000 1233
Q ss_pred cCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEEC
Q 002490 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (916)
Q Consensus 145 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 224 (916)
.+....+....++.+.+.+-...+ .+ ...+++..++.||++++++.-..
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~------------------------------~i-~~~~~i~~iavSpng~~iAl~t~ 236 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFK------------------------------QI-DSDGPIIKIAVSPNGKFIALFTD 236 (410)
T ss_pred cCcceEEEEecCCEEEEEEccccc------------------------------cc-cCCCCeEEEEECCCCCEEEEEEC
Confidence 333344444444444433322100 01 12467999999999999999999
Q ss_pred CCcEEEEECCCCcceeeeeeec-CCCCeEEEEEccCC
Q 002490 225 DRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQ 260 (916)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~ 260 (916)
+|.+.+.+..-.+. ...+.. .......+.|.-+.
T Consensus 237 ~g~l~v~ssDf~~~--~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 237 SGNLWVVSSDFSEK--LCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCEEEEECcccce--eEEeecCcCCCCcEEEEECCC
Confidence 99999987665554 222222 23455667776543
No 357
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.026 Score=63.35 Aligned_cols=205 Identities=13% Similarity=0.127 Sum_probs=107.3
Q ss_pred CeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeE
Q 002490 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS 417 (916)
Q Consensus 338 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~ 417 (916)
..|++|+..+. .+....... ..+-.+.|+.+...+++.- +|++.+|.+-+........-.+.....|..
T Consensus 64 ~~I~If~~sG~-lL~~~~w~~-------~~lI~mgWs~~eeLI~v~k---~g~v~Vy~~~ge~ie~~svg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNISGQ-LLGRILWKH-------GELIGMGWSDDEELICVQK---DGTVHVYGLLGEFIESNSVGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecccc-chHHHHhcC-------CCeeeecccCCceEEEEec---cceEEEeecchhhhcccccccccccCceeE
Confidence 45788887653 222222211 1677899999988666644 499999998655332210011223334555
Q ss_pred EEEEeCCcEEEEEcCCCEEEEEccCCceEEEeeC-CC---ceeEEEEeCCc---eEEEEEC--CEEEEEEc--CCCeEEE
Q 002490 418 AIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSIL-PI---AADAIFYAGTG---NLLCRAE--DRVVIFDL--QQRLVLG 486 (916)
Q Consensus 418 ~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~-~~---~v~~l~~s~~g---~~l~~~d--~~v~l~d~--~~~~~~~ 486 (916)
+.|..+|-.+.+.+ +..+.+-+......++.+. |. +.++-...+++ ..++--+ -...++-+ ...+...
T Consensus 133 c~~f~~GVavlt~~-g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 133 CRFFHNGVAVLTVS-GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred EEEecCceEEEecC-CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 66666554444444 4455555554434444332 22 22222222221 1111111 01111111 1111111
Q ss_pred EEE-cCCeeEEEEcCCCCEEEEEe-CCeEEEEecCCcc-eEEEe--eeeeEEEEEEecCCeEEEEcCCceeEE
Q 002490 487 DLQ-TPFVKYVVWSNDMESVALLS-KHAIIIASKKLVH-QCTLH--ETIRVKSGAWDDNGVFIYTTLNHIKYC 554 (916)
Q Consensus 487 ~~~-~~~v~~v~~s~d~~~la~~~-~~~i~i~~~~~~~-~~~~~--~~~~i~s~~w~~~~~~l~~t~~~~~~~ 554 (916)
-.. .+.+..+..||+.++||.-+ .+.|.+-+.++.+ ++.+. .....+.++|..++..+.+-.+.+...
T Consensus 212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lv 284 (829)
T KOG2280|consen 212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLV 284 (829)
T ss_pred cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEE
Confidence 111 25678899999999999887 7889888888765 44444 344556889997665554444444443
No 358
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.82 E-value=0.13 Score=59.79 Aligned_cols=409 Identities=11% Similarity=0.065 Sum_probs=217.7
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEe-cccccCEEEEEEecCC------CEEEEEECCCeEEEEECC-
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKSQ------PLFVSGGDDYKIKVWNYK- 81 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~-~~h~~~V~~i~fsp~~------~~l~s~~~dg~I~vWd~~- 81 (916)
+.+++.+.+.+...++.++.++.+...++..+.+.... +..+..|.|++++|-+ ++++.|..+..+.+--..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34455555555566777766677777776666532222 2346779999999752 267888766555444332
Q ss_pred CCeeEEE--Eec--CCCCEEEEEEcCCCCEEEEEECCCcEEEEeC--CCCeEEEEEe--CCCCceEEEEEecCCCEEEEE
Q 002490 82 MHRCLFT--LLG--HLDYIRTVQFHHEYPWIVSASDDQTIRIWNW--QSRTCISVLT--GHNHYVMCASFHPKEDLVVSA 153 (916)
Q Consensus 82 ~~~~~~~--l~~--h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~s~ 153 (916)
+...+.. +.+ -...|....|-.|..+|.++..||.+.-+.+ .+++.-..-+ --..++.--.|+..+..-+.+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa 647 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA 647 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence 2222221 111 1234555566667889999999998876654 4444332221 123455555666665544444
Q ss_pred ECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCee-EEEEcC-CC-CEEEEEECCCcEEE
Q 002490 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN-WAAFHP-TL-PLIVSGADDRQVKL 230 (916)
Q Consensus 154 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p-~~-~~l~~~~~dg~v~i 230 (916)
..|.-..+|.-+..-.- .+ +. -..+. .+.|+. .. ..++++ ..+.+++
T Consensus 648 ~sdrP~viY~~n~kLv~--sp-------------------------ls--~kev~~~c~f~s~a~~d~l~~~-~~~~l~i 697 (1096)
T KOG1897|consen 648 LSDRPTVIYSSNGKLVY--SP-------------------------LS--LKEVNHMCPFNSDAYPDSLASA-NGGALTI 697 (1096)
T ss_pred eCCCCEEEEecCCcEEE--ec-------------------------cc--hHHhhhhcccccccCCceEEEe-cCCceEE
Confidence 45665556654331100 00 00 00011 112222 11 234444 4567888
Q ss_pred EECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCC--------------CcEEEEECCCCceeEEeeccC----Cc
Q 002490 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED--------------KSIRVWDVTKRTGVQTFRREH----DR 292 (916)
Q Consensus 231 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d--------------g~i~vwd~~~~~~~~~~~~~~----~~ 292 (916)
..+..-+...+++++-+ ..+..+++.+....+++.+.. ..++++|-++.+.+...+... -.
T Consensus 698 ~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~S 776 (1096)
T KOG1897|consen 698 GTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALS 776 (1096)
T ss_pred EEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeee
Confidence 77766554445554433 455677887755555544321 136777776655544332211 12
Q ss_pred EEEEEEecC-CCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEE
Q 002490 293 FWILASHPE-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (916)
Q Consensus 293 i~~l~~sp~-~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (916)
+.+..+..| +.++++|+. ++|--+.+. ..|.|.+|.+...+.+....-... .+.+.++
T Consensus 777 i~s~~~~~d~~t~~vVGT~---~v~Pde~ep-------------~~GRIivfe~~e~~~L~~v~e~~v-----~Gav~aL 835 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTG---LVYPDENEP-------------VNGRIIVFEFEELNSLELVAETVV-----KGAVYAL 835 (1096)
T ss_pred eeeeeecCCCceEEEEEEE---eeccCCCCc-------------ccceEEEEEEecCCceeeeeeeee-----ccceeeh
Confidence 444557766 667777763 122211111 457788888877433333321111 1134443
Q ss_pred EEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCce--EE--
Q 002490 372 SYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEV--VK-- 447 (916)
Q Consensus 372 ~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~--~~-- 447 (916)
..- +|+. +++-+ ..+++|++..+.... ....+...+..+...-.|.+++.++--+.+.+-.....+ ..
T Consensus 836 ~~f-ngkl-lA~In---~~vrLye~t~~~eLr---~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 836 VEF-NGKL-LAGIN---QSVRLYEWTTERELR---IECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred hhh-CCeE-EEecC---cEEEEEEccccceeh---hhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 322 3443 33333 699999997663222 344667778888888889999998877777665544321 22
Q ss_pred -EeeCCCceeEEEEeCCceEEEE-ECCEEEEEE
Q 002490 448 -KSILPIAADAIFYAGTGNLLCR-AEDRVVIFD 478 (916)
Q Consensus 448 -~i~~~~~v~~l~~s~~g~~l~~-~d~~v~l~d 478 (916)
+-..+...+++.+-.+..++.+ ..+.+++-.
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAENSGNLFTVR 940 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeecccccEEEEE
Confidence 2222336666666666666666 455555443
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.81 E-value=0.013 Score=59.26 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=108.6
Q ss_pred eeecCCCCeEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeEEeeccC-CcEEEEEEecCCCeEEEEeCCCceEEEecC
Q 002490 243 TLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (916)
Q Consensus 243 ~~~~~~~~v~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~la~g~~~~~~v~~~~~ 320 (916)
.+.+-...++.++|.|+.+ ++++..+.+.|..++. +|+.+..+.... +..-.+++..++.++++.-
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E----------- 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE----------- 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET-----------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc-----------
Confidence 4556666799999999755 5666677788888886 578877776543 4567777766665444332
Q ss_pred CcceEEecCCEEEEEeCCeEEEEEccCC------ceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEE
Q 002490 321 ERPAFAVSGDSLFYAKDRFLRYYEFSTQ------KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY 394 (916)
Q Consensus 321 ~~~~~s~~~~~l~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~ 394 (916)
.++.+.++++... .....+.+..... . +..+..++|+|.++.++++-. ..-..||
T Consensus 84 ---------------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-N~G~EGla~D~~~~~L~v~kE--~~P~~l~ 144 (248)
T PF06977_consen 84 ---------------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNK-G-NKGFEGLAYDPKTNRLFVAKE--RKPKRLY 144 (248)
T ss_dssp ---------------TTTEEEEEEE----TT--EEEEEEEE---S-----SS--EEEEEETTTTEEEEEEE--SSSEEEE
T ss_pred ---------------CCCcEEEEEEeccccccchhhceEEecccccC-C-CcceEEEEEcCCCCEEEEEeC--CCChhhE
Confidence 1233333333110 0011122221100 1 226889999999888887754 2346677
Q ss_pred EeeCCC--CC-CCc-----cccccccCceeEEEEEeC-CcEEEEEcCCCEEEEEccCCceEEEeeCCC----------ce
Q 002490 395 VIPKDS--IG-RGD-----SVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPI----------AA 455 (916)
Q Consensus 395 ~~~~~~--~~-~~~-----~~~~~~~~~i~~~~fs~~-~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~----------~v 455 (916)
.+.... .. ... ...........++.+.|. +.+++.+..+..|.+.|.+++.+..+.... ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SE
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCc
Confidence 776521 10 000 001122334677888877 578888888899999998888777665543 57
Q ss_pred eEEEEeCCceEEEE-ECCEEEEE
Q 002490 456 DAIFYAGTGNLLCR-AEDRVVIF 477 (916)
Q Consensus 456 ~~l~~s~~g~~l~~-~d~~v~l~ 477 (916)
..|+|.++|++.++ ..+..++|
T Consensus 225 EGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT--EEEEETTTEEEEE
T ss_pred cEEEECCCCCEEEEcCCceEEEe
Confidence 88999999888777 44555444
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.0016 Score=71.75 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=117.7
Q ss_pred eecCCCCeEEEEEccCCCEEEEEe---CC-CcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEec
Q 002490 244 LRGHMNNVSCVMFHAKQDIIVSNS---ED-KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (916)
Q Consensus 244 ~~~~~~~v~~l~~sp~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~ 319 (916)
+......+..-.|+|++..++..+ .. ..+.++++.++....... ..+.-...+|+|||+.++..+...
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd------- 259 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD------- 259 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCC-------
Confidence 333345566678999888765542 22 358889998876554443 223334567888888777655321
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC
Q 002490 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (916)
Q Consensus 320 ~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~ 399 (916)
..-.|.++|+.++....+.... + .-..-.|+|||+.++.+++ ..|.-.||..+.+
T Consensus 260 ----------------g~~~iy~~dl~~~~~~~Lt~~~--g------i~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~~~ 314 (425)
T COG0823 260 ----------------GSPDIYLMDLDGKNLPRLTNGF--G------INTSPSWSPDGSKIVFTSD-RGGRPQIYLYDLE 314 (425)
T ss_pred ----------------CCccEEEEcCCCCcceecccCC--c------cccCccCCCCCCEEEEEeC-CCCCcceEEECCC
Confidence 1234667777776533322111 1 3336789999999999887 5567777777655
Q ss_pred CCCCCccccccccCceeEEEEEeCCcEEEEEcCC-C--EEEEEccCCce-EEEeeCCCceeEEEEeCCceEEEEE
Q 002490 400 SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS-N--QVLVKNLKNEV-VKKSILPIAADAIFYAGTGNLLCRA 470 (916)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d-~--~I~iwdl~~~~-~~~i~~~~~v~~l~~s~~g~~l~~~ 470 (916)
...... .....+.-..-.|+|||++++..+.. | .|.+.++.+.. .+.+........-.++++|+.+...
T Consensus 315 g~~~~r--iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 315 GSQVTR--LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCceeE--eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 443221 11222222267899999998888743 3 36777776433 4445544455677788898888773
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.74 E-value=0.012 Score=63.50 Aligned_cols=215 Identities=15% Similarity=0.162 Sum_probs=126.4
Q ss_pred CeEEEEECCCCceEEEecc-cccCEEEEE---EecC----CCEEEEEEC---------C-CeEEEEECCCC----eeEEE
Q 002490 31 GVIQLWDYRMGTLIDRFDE-HDGPVRGVH---FHKS----QPLFVSGGD---------D-YKIKVWNYKMH----RCLFT 88 (916)
Q Consensus 31 g~I~lwd~~~~~~~~~~~~-h~~~V~~i~---fsp~----~~~l~s~~~---------d-g~I~vWd~~~~----~~~~~ 88 (916)
+.|+|.|..+.+.+.++.- ....+.+++ |..+ .++|+.|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4689999888888876642 222344433 3332 568887753 2 89999999874 22222
Q ss_pred E--ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEEe-CCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 89 L--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 89 l--~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~-~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~ 164 (916)
+ ....++|++++-. ++ +|+.+. ++.|.+|++...+ ....-. .....++++... ++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 2357889998866 33 455544 4789999998777 443322 223366666665 669999998888888755
Q ss_pred CCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCC--------
Q 002490 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-------- 236 (916)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~-------- 236 (916)
+..... ............++++.|-++++.++++..+|.+.++.....
T Consensus 157 ~~~~~~------------------------l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 157 DEENNK------------------------LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp ETTTE-------------------------EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred EccCCE------------------------EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccc
Confidence 431110 011222334566888899877678999999999999987632
Q ss_pred -cceeeeeeecCCCCeEEE---EEccC--CC------EEEEEeCCCcEEEE
Q 002490 237 -KAWEVDTLRGHMNNVSCV---MFHAK--QD------IIVSNSEDKSIRVW 275 (916)
Q Consensus 237 -~~~~~~~~~~~~~~v~~l---~~sp~--~~------~l~s~~~dg~i~vw 275 (916)
+......+ .....|+++ .+.|. +. .++.++.+|.|.+.
T Consensus 213 ~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 213 PKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 11111111 233556666 44441 22 47778888888743
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.72 E-value=0.021 Score=64.04 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=128.0
Q ss_pred eeEEEEcCCCCEEEEEE-CCC----cEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC-----------
Q 002490 207 VNWAAFHPTLPLIVSGA-DDR----QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK----------- 270 (916)
Q Consensus 207 v~~~~~~p~~~~l~~~~-~dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg----------- 270 (916)
+....++|++++++.+- ..| .++++|+.+++... ..+.. .....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Ccccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34678999999888763 333 59999999987521 12222 1123499999988877765433
Q ss_pred cEEEEECCCCcee--EEeeccCCc--EEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEcc
Q 002490 271 SIRVWDVTKRTGV--QTFRREHDR--FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (916)
Q Consensus 271 ~i~vwd~~~~~~~--~~~~~~~~~--i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~ 346 (916)
.|+.|.+.+...- ..+...... ...+..+++++++++....+.. ...+.+.+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~----------------------~s~v~~~d~~ 260 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS----------------------ESEVYLLDLD 260 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS----------------------EEEEEEEECC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc----------------------CCeEEEEecc
Confidence 3778887765432 333333333 5678888898887765533321 1445666666
Q ss_pred CC----ceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCC--CccccccccCceeEEEE
Q 002490 347 TQ----KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR--GDSVQDAKKGLGGSAIF 420 (916)
Q Consensus 347 ~~----~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~--~~~~~~~~~~~i~~~~f 420 (916)
.+ .....+..+..+ ....+... +..+.+.+..+....+|+.++-..... -......+...+.-..+
T Consensus 261 ~~~~~~~~~~~l~~~~~~------~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~ 332 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDG------VEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV 332 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-------EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred ccCCCcCCcEEEeCCCCc------eEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence 53 112222221111 11222222 444444443333344455444333221 01012223332222223
Q ss_pred EeCC-cEEEEEcCC--CEEEEEccC-CceEEEeeCCC--ceeEEEEeCCceEEE-E-----ECCEEEEEEcCCCeEE
Q 002490 421 IARN-RFAVLDKSS--NQVLVKNLK-NEVVKKSILPI--AADAIFYAGTGNLLC-R-----AEDRVVIFDLQQRLVL 485 (916)
Q Consensus 421 s~~~-~~l~~~~~d--~~I~iwdl~-~~~~~~i~~~~--~v~~l~~s~~g~~l~-~-----~d~~v~l~d~~~~~~~ 485 (916)
...+ .+++....+ ..|+++++. +.....+..+. .|..+...+++..+. . ...+++.||+.+++..
T Consensus 333 ~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 333 SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 3333 344443333 478899999 88777777766 445555555544443 2 4679999999988764
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.66 E-value=0.17 Score=56.85 Aligned_cols=256 Identities=11% Similarity=0.071 Sum_probs=134.3
Q ss_pred eEEEEEccCCCEEEEE-eCCC----cEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe-CCCceEEEecCCcce
Q 002490 251 VSCVMFHAKQDIIVSN-SEDK----SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERPA 324 (916)
Q Consensus 251 v~~l~~sp~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-~~~~~v~~~~~~~~~ 324 (916)
+....++|+|++++.+ +..| .++++|+.+++.+...- .......+.|.++++.|.... +..-..- ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~---- 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTS--DS---- 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS---CC----
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccc--cC----
Confidence 3467899999998865 4444 49999999997765321 112223489999987665443 2211000 00
Q ss_pred EEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCC---
Q 002490 325 FAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI--- 401 (916)
Q Consensus 325 ~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~--- 401 (916)
.....|+.|.+.+......+-+..... . .....+..+++++++++........-.+|-++....
T Consensus 199 ----------~~~~~v~~~~~gt~~~~d~lvfe~~~~-~--~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 199 ----------GYPRQVYRHKLGTPQSEDELVFEEPDE-P--FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp ----------GCCEEEEEEETTS-GGG-EEEEC-TTC-T--TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred ----------CCCcEEEEEECCCChHhCeeEEeecCC-C--cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 024567888888765543333333222 1 025678899999998887664332244554443331
Q ss_pred -CCCccccccccCceeEEEEEeCCcEEEEEcC---CCEEEEEccCCce----EEEeeCCC---ceeEEEEeCCceEEEE-
Q 002490 402 -GRGDSVQDAKKGLGGSAIFIARNRFAVLDKS---SNQVLVKNLKNEV----VKKSILPI---AADAIFYAGTGNLLCR- 469 (916)
Q Consensus 402 -~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~---d~~I~iwdl~~~~----~~~i~~~~---~v~~l~~s~~g~~l~~- 469 (916)
.... ........+...+-...+.+++.... ++.|.-.++.+.. ...+..+. .+..+....+..++..
T Consensus 266 ~~~~~-~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 266 DAKPK-LLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp S-SEE-EEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred cCCcE-EEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 1111 22222223333333345555555432 4577777777422 22344333 4666666555433333
Q ss_pred ECC--EEEEEEcCCCeEEEEEEc---CCeeEEEEcCCCCEEEEEe-----CCeEEEEecCCcceEEEe
Q 002490 470 AED--RVVIFDLQQRLVLGDLQT---PFVKYVVWSNDMESVALLS-----KHAIIIASKKLVHQCTLH 527 (916)
Q Consensus 470 ~d~--~v~l~d~~~~~~~~~~~~---~~v~~v~~s~d~~~la~~~-----~~~i~i~~~~~~~~~~~~ 527 (916)
.++ .|+++++..+.....+.. +.|..+...+++..+.+.- -.+++.+|..++....+.
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 333 789999985555555553 3345555555665554332 237888888877765543
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.19 Score=57.62 Aligned_cols=109 Identities=9% Similarity=0.062 Sum_probs=69.4
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEecccc-cCEE----------EEEEecCCCEEEEEECCCeEEEEECCCCeeEEEE
Q 002490 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVR----------GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~-~~V~----------~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l 89 (916)
+..|++++.++.|.-.|..+|+.+-++.... ..+. .+++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777788899999999999988775321 1111 1222 2345777788999999999999998765
Q ss_pred ec--CCC--CEEEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeEEEEEe
Q 002490 90 LG--HLD--YIRTVQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLT 132 (916)
Q Consensus 90 ~~--h~~--~v~~v~fs~~~~~l~s~s~------dg~I~iwd~~~~~~~~~~~ 132 (916)
.. +.. .+.+--.-.++ .++.++. +|.|..+|..+|+.+..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 42 111 11111001134 4444432 6889999999999887654
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.59 E-value=1.6e-05 Score=85.83 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=132.0
Q ss_pred cCCCEEEEEEeC--CCCEEEEEecCCeEEEEECCCCceE--EEecccccCEEEEEEec-CCCEEEEEE----CCCeEEEE
Q 002490 8 KSNRVKGLSFHS--KRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVHFHK-SQPLFVSGG----DDYKIKVW 78 (916)
Q Consensus 8 h~~~V~~l~~sp--~~~~la~~~~dg~I~lwd~~~~~~~--~~~~~h~~~V~~i~fsp-~~~~l~s~~----~dg~I~vW 78 (916)
....++|++++- +...+++|..+|.|.+-.++...-- ....+|..+.++++|++ |...||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 345678888654 4568899999999999987654322 23456888999999998 455677763 36789999
Q ss_pred ECCCC--eeE--EEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEec-CCCEEEE
Q 002490 79 NYKMH--RCL--FTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVS 152 (916)
Q Consensus 79 d~~~~--~~~--~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~l~s 152 (916)
|+.++ .+. ..+. +......+++|-.+.+++.+|.....+.++|++... .....-....+..+...| .++++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceec
Confidence 99876 111 1122 234456688999899999999999999999986221 111112234566677888 6778877
Q ss_pred EECCCeEEEEE-CCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCC-EEEEE-ECCCcEE
Q 002490 153 ASLDQTVRVWD-IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSG-ADDRQVK 229 (916)
Q Consensus 153 ~s~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~-~~dg~v~ 229 (916)
-. ||.|.+|| ..+.+...... ..........+..++|+|..+ ++++. -+.++|+
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i----------------------~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQII----------------------LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred cc-cCceeeccchhhhccHHHHH----------------------hhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 66 99999999 33322111000 000011123578899999643 33333 3567888
Q ss_pred EEECCC
Q 002490 230 LWRMNE 235 (916)
Q Consensus 230 iwd~~~ 235 (916)
.+++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 888753
No 366
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.01 Score=66.41 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=61.9
Q ss_pred CceeEEEEeCCceEEEE--ECCEEEEEEcCCCeEEEEEEc---CCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEe
Q 002490 453 IAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT---PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLH 527 (916)
Q Consensus 453 ~~v~~l~~s~~g~~l~~--~d~~v~l~d~~~~~~~~~~~~---~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~ 527 (916)
..+..+..||++++|+. ..|.+.+-+....+.+.++.. .....++|..+. -+++.-...+.+..+..+.+...-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-aVvl~~e~~l~lvgp~gd~V~f~y 295 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-AVVLSWEVNLMLVGPPGDSVQFYY 295 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC-ceEEEEeeeEEEEcCCCCcccccc
Confidence 47889999999998886 788999988888888877762 445688887655 333333556666666555443332
Q ss_pred eeeeEEEEEEecCCeEEEEcCCc
Q 002490 528 ETIRVKSGAWDDNGVFIYTTLNH 550 (916)
Q Consensus 528 ~~~~i~s~~w~~~~~~l~~t~~~ 550 (916)
....+ +.--.||+.++++.+|
T Consensus 296 d~t~~--l~~E~DGVRI~t~t~~ 316 (829)
T KOG2280|consen 296 DETAI--LSAEVDGVRIITSTSH 316 (829)
T ss_pred CCCce--eeeccCeeEEeccchH
Confidence 21111 2224577777776654
No 367
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.52 E-value=0.11 Score=57.06 Aligned_cols=149 Identities=16% Similarity=0.319 Sum_probs=92.0
Q ss_pred CCEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCceEEEecccccCEEEEEEecC----CCEEEEEECCCeEEEEECC--
Q 002490 10 NRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS----QPLFVSGGDDYKIKVWNYK-- 81 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~--~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~----~~~l~s~~~dg~I~vWd~~-- 81 (916)
.+|.+++|....+.+++.. ++|.++.=| .+.+..|+ .|.++.|.|- .+.|........|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 5788999975444555553 455554333 34455553 4889999885 4456666677899999875
Q ss_pred ---CCeeEEEEecCC-C----CEEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEEeCCCCceEEEEEecCCCEEE
Q 002490 82 ---MHRCLFTLLGHL-D----YIRTVQFHHEYPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKEDLVV 151 (916)
Q Consensus 82 ---~~~~~~~l~~h~-~----~v~~v~fs~~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 151 (916)
+++.+.+-..+- . --..+.|||....|+.-.....-.+.+++ +.+....++ ..+.|.|.+|.+||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEE
Confidence 233332222111 1 12457899999877776655544556654 333333443 467899999999999777
Q ss_pred EEECC-CeEEEEECCC
Q 002490 152 SASLD-QTVRVWDIGA 166 (916)
Q Consensus 152 s~s~d-g~v~vwd~~~ 166 (916)
++-.. -.-++||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 66433 3456787543
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.50 E-value=3.6e-05 Score=83.29 Aligned_cols=159 Identities=14% Similarity=0.280 Sum_probs=106.8
Q ss_pred cccCCCEEEEEEeC-CCCEEEEEe----cCCeEEEEECCCC--ceE--EEecc-cccCEEEEEEecCCCEEEEEECCCeE
Q 002490 6 ETKSNRVKGLSFHS-KRPWILASL----HSGVIQLWDYRMG--TLI--DRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKI 75 (916)
Q Consensus 6 ~~h~~~V~~l~~sp-~~~~la~~~----~dg~I~lwd~~~~--~~~--~~~~~-h~~~V~~i~fsp~~~~l~s~~~dg~I 75 (916)
.+|....++++|++ |.++||+|. .+..+.|||+.++ .+. ..|.+ -.....+++|-.+.+++.+|.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 45677899999998 667888884 2567999999876 111 11222 33445689999999999999999999
Q ss_pred EEEECCCCeeEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEeC-CC-CeEEEEEeC----CCCceEEEEEecCCC
Q 002490 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNW-QS-RTCISVLTG----HNHYVMCASFHPKED 148 (916)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~v~~v~fs~-~~~~l~s~s~dg~I~iwd~-~~-~~~~~~~~~----h~~~v~~l~~~p~~~ 148 (916)
.++|++.. +.....-.+..+..+...| .+.++++-+ ||.|.+||. .. ..++..+.. ....+..++|+|...
T Consensus 179 ~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 179 HIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred hhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 99998721 1111122345677777788 566777655 899999993 22 122222221 123488999999654
Q ss_pred -EEEEEEC-CCeEEEEECCC
Q 002490 149 -LVVSASL-DQTVRVWDIGA 166 (916)
Q Consensus 149 -~l~s~s~-dg~v~vwd~~~ 166 (916)
.+++.+. .++|+++|+..
T Consensus 257 glla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred chhhhhccCcceEEEecccc
Confidence 5555554 57899999865
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.48 E-value=0.13 Score=59.11 Aligned_cols=264 Identities=12% Similarity=0.070 Sum_probs=141.9
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecc--ccc--CEEEEEEecCCCEEEEEE------CCCeEEEEECCCCeeEEEEec
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDE--HDG--PVRGVHFHKSQPLFVSGG------DDYKIKVWNYKMHRCLFTLLG 91 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~--h~~--~V~~i~fsp~~~~l~s~~------~dg~I~vWd~~~~~~~~~l~~ 91 (916)
..+++++.++.|.-.|.++|+.+-.... +.. .+++--.--++ .++.+. .+|.|.-+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999999877642 111 11111001134 444443 268999999999998876532
Q ss_pred CCC-------------------------------CEE-EEEEcCCCCEEEEEECC-----C-----------cEEEEeCC
Q 002490 92 HLD-------------------------------YIR-TVQFHHEYPWIVSASDD-----Q-----------TIRIWNWQ 123 (916)
Q Consensus 92 h~~-------------------------------~v~-~v~fs~~~~~l~s~s~d-----g-----------~I~iwd~~ 123 (916)
-.. .+. .+.+.++..+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 110 111 23455555555554421 1 57777888
Q ss_pred CCeEEEEEeCCCCceE---------EEEEecCCC---EEEEEECCCeEEEEECCCCcceeccCCcc--ce--eeccc-cc
Q 002490 124 SRTCISVLTGHNHYVM---------CASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADD--IL--RLSQM-NT 186 (916)
Q Consensus 124 ~~~~~~~~~~h~~~v~---------~l~~~p~~~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~--~~~~~-~~ 186 (916)
+|+....++...+.+. -+....+|+ .++.+..+|.+.+.|..+++.....+... .. .+... ..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 9998877764332222 122223565 78899999999999999887642111100 00 00000 00
Q ss_pred cc------cc-cccceEEEEEeccCCCee--EEEEcCCCCEEEEEECC--------------------------------
Q 002490 187 DL------FG-GVDAVVKYVLEGHDRGVN--WAAFHPTLPLIVSGADD-------------------------------- 225 (916)
Q Consensus 187 ~~------~~-~~~~~~~~~~~~~~~~v~--~~~~~p~~~~l~~~~~d-------------------------------- 225 (916)
.. +. ...........+..++++ .++++|+..++++...+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 00 00 000011112223333332 24555655544433322
Q ss_pred -CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 002490 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (916)
Q Consensus 226 -g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 289 (916)
|.|.-+|+.+++. .-..........+. +.-.+.+++.++.+|.++.+|.++|+.+..++..
T Consensus 440 ~g~l~AiD~~tGk~--~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKI--VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCce--eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4566677777764 22222111111121 1124557778888999999999999999888754
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.46 E-value=0.014 Score=67.17 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=119.3
Q ss_pred CCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEe------CCC--cEEEEECCCCceeEEeeccCCcEEEE
Q 002490 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS------EDK--SIRVWDVTKRTGVQTFRREHDRFWIL 296 (916)
Q Consensus 225 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~i~~l 296 (916)
+|.+.-.+ .+...++....+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+.. ....+.-
T Consensus 328 ~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~P 402 (591)
T PRK13616 328 DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRP 402 (591)
T ss_pred CCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCc
Confidence 67665543 322222333333334678899999999887765 233 45555642 222 33322 2247788
Q ss_pred EEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCC
Q 002490 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (916)
Q Consensus 297 ~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 376 (916)
.|+|+|..+++..++.-..+-.... ..+.+.+.++..+.... .+.. .|..+.||||
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~--------------~~gql~~~~vd~ge~~~--~~~g--------~Issl~wSpD 458 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDP--------------ATGQLARTPVDASAVAS--RVPG--------PISELQLSRD 458 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccC--------------CCceEEEEeccCchhhh--ccCC--------CcCeEEECCC
Confidence 9999988887765432221110000 23456555666554432 2221 7999999999
Q ss_pred CCEEEEEEcCCCCEEEEEEeeCCCCCCCc--cc--c-ccccCceeEEEEEeCCcEEEEEcC-CCEEEEEccCCceEEEee
Q 002490 377 ENAVLICSDVDGGSYELYVIPKDSIGRGD--SV--Q-DAKKGLGGSAIFIARNRFAVLDKS-SNQVLVKNLKNEVVKKSI 450 (916)
Q Consensus 377 ~~~llv~~~~~~g~i~i~~~~~~~~~~~~--~~--~-~~~~~~i~~~~fs~~~~~l~~~~~-d~~I~iwdl~~~~~~~i~ 450 (916)
|..+++..+ +.+.+-.+.....+... .+ . ......+.++.|..++.+++.... +..+...++++.....+.
T Consensus 459 G~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~ 535 (591)
T PRK13616 459 GVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALP 535 (591)
T ss_pred CCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccC
Confidence 999998875 77777544443333211 01 1 122233578999999987655432 233444455554433333
Q ss_pred CC---CceeEEEEeCCceEEEEECCE
Q 002490 451 LP---IAADAIFYAGTGNLLCRAEDR 473 (916)
Q Consensus 451 ~~---~~v~~l~~s~~g~~l~~~d~~ 473 (916)
.. .++..++-+++ .+++++.+.
T Consensus 536 ~~n~~~~v~~vaa~~~-~iyv~~~~g 560 (591)
T PRK13616 536 SRNLSAPVVAVAASPS-TVYVTDARA 560 (591)
T ss_pred CCCccCceEEEecCCc-eEEEEcCCc
Confidence 32 27778887764 555554333
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.26 Score=54.20 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=154.5
Q ss_pred EEEEECCCCceEEEecccccCEEEEEEecCCCEEEEE-ECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEE-EE
Q 002490 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI-VS 110 (916)
Q Consensus 33 I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~-~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l-~s 110 (916)
+.+++..+......+..+. ....+...+++..+... .....+.+-+............-...-..+..++.++.+ ++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 6666666655555554444 44667888888544333 222355555554222222122121445677888888844 44
Q ss_pred EECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEEC---CCeEEEEECCCCcceeccCCccceeecccccc
Q 002490 111 ASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (916)
Q Consensus 111 ~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 187 (916)
...+..|.+.|..+.+.......-. ....++++|+++.+.++.. ++++.+.|..+.+....
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------- 155 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------- 155 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---------------
Confidence 4456899999988777766654222 5678999999987776655 67888888776554321
Q ss_pred ccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEE-CCCcEEEEECCCCcceeeee---eecCCCCeEEEEEccCCCEE
Q 002490 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDT---LRGHMNNVSCVMFHAKQDII 263 (916)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l 263 (916)
...+. .+ ..++++|+|..+.... .++.|.+.|......+. .. ...-......+.++|++..+
T Consensus 156 -----------~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 156 -----------IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred -----------EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEE
Confidence 11111 23 7899999999665554 78999999977766421 11 11222344678999999977
Q ss_pred EEEeCC---CcEEEEECCCCceeEEeeccCC-cEEEEEEecCCCeEEEEe
Q 002490 264 VSNSED---KSIRVWDVTKRTGVQTFRREHD-RFWILASHPEMNLLAAGH 309 (916)
Q Consensus 264 ~s~~~d---g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~la~g~ 309 (916)
.+.... +.+...|..++.....-..... ....+..+|++..+.+..
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 665544 4888999888776665221112 456788888888877664
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.074 Score=55.87 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=130.3
Q ss_pred EEEeCCCCEE-EEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe---
Q 002490 15 LSFHSKRPWI-LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL--- 90 (916)
Q Consensus 15 l~~sp~~~~l-a~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~--- 90 (916)
-.|.|++..| .+--..+.|.-|+..+++. ..+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3577777744 4444578888898776642 3332 2333444444444445555433 45667766555533322
Q ss_pred -c-CCCCEEEEEEcCCCCEEEEEEC------C---CcEEEEeCC-CCeEEEEEeCCCCceEEEEEecCCCEEEEEEC-CC
Q 002490 91 -G-HLDYIRTVQFHHEYPWIVSASD------D---QTIRIWNWQ-SRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ 157 (916)
Q Consensus 91 -~-h~~~v~~v~fs~~~~~l~s~s~------d---g~I~iwd~~-~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~-dg 157 (916)
+ .......+...|+|.+-++... . ..-.+|.+. .+..+..+..+-..-+.++||||++.++.+.. .+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1 1234566778888875554332 0 111344444 56666666666666788999999987776654 47
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC-cEEEEECCCC
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMNET 236 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg-~v~iwd~~~~ 236 (916)
.|.-|++....-.. + ............+..-.++...+|.+.+++..+| .|.+|+.. +
T Consensus 186 ~i~r~~~d~~~g~~------------------~--~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 186 RIHRYDLDPATGPI------------------G--GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred eEEEEecCcccCcc------------------C--CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 78888775300000 0 0011122223445566788888898876555554 89999988 5
Q ss_pred cceeeeeeecCCCCeEEEEEc-cCCCEEEEEe
Q 002490 237 KAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNS 267 (916)
Q Consensus 237 ~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~~ 267 (916)
+. +....-....+++++|- |+.+.|++.+
T Consensus 245 ~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 245 KL--LGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cE--EEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 55 55555555677888885 3445554444
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00073 Score=73.61 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEE-EEEEecCCCEEEEEECCCeEEEEECCCCeeEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~-~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~ 87 (916)
...|.-+.|+|..+.+|.+..+|.|.+..+. .+.+.++.-|..+++ +++|.|||++||.|-.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568889999999999999999999999987 778888887888888 99999999999999999999999999887766
Q ss_pred EEe-cCCCCEEEEEEc
Q 002490 88 TLL-GHLDYIRTVQFH 102 (916)
Q Consensus 88 ~l~-~h~~~v~~v~fs 102 (916)
... .-...|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 521 123344444443
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.35 E-value=0.012 Score=68.76 Aligned_cols=134 Identities=10% Similarity=0.162 Sum_probs=97.2
Q ss_pred ecCCeEEEEECCCCceEEEecccccC-EEEEEEecCC-------CEEEEEECCCeEEEEECCCC--eeEEE-E--ecCCC
Q 002490 28 LHSGVIQLWDYRMGTLIDRFDEHDGP-VRGVHFHKSQ-------PLFVSGGDDYKIKVWNYKMH--RCLFT-L--LGHLD 94 (916)
Q Consensus 28 ~~dg~I~lwd~~~~~~~~~~~~h~~~-V~~i~fsp~~-------~~l~s~~~dg~I~vWd~~~~--~~~~~-l--~~h~~ 94 (916)
.....|+-.|++.|+.+..++.|... |..++ |+. .--..|-.+..+..||.+-. +++.. . .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 34578999999999999999987754 55543 432 23455667789999998742 23321 1 12344
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 95 ~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
...|++-+.+| +||+|+.+|.||+||--..+....+.+-..+|.++..+.||++++..+ +..+.+++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67788777777 799999999999999544344445667789999999999999888776 5678888753
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.31 E-value=0.027 Score=61.24 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=60.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EECCCCc---c-eee---eeeecC-CCCeEEEEEcc-----------CCCEEEEE
Q 002490 209 WAAFHPTLPLIVSGADDRQVKL---WRMNETK---A-WEV---DTLRGH-MNNVSCVMFHA-----------KQDIIVSN 266 (916)
Q Consensus 209 ~~~~~p~~~~l~~~~~dg~v~i---wd~~~~~---~-~~~---~~~~~~-~~~v~~l~~sp-----------~~~~l~s~ 266 (916)
.++.+|++.+|+.+..++.+.+ |+..... . ..+ ..+... ...|+++.+-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999987776655 5331111 1 111 111111 14677776644 46789999
Q ss_pred eCCCcEEEEECCCCceeEEeeccCCcEEEEEEec
Q 002490 267 SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 267 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
..+|.|++|.- +|..+..-..|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999985 6777766667888888887754
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.30 E-value=0.017 Score=67.53 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=94.2
Q ss_pred ECCCeEEEEECCCCeeEEEEecCCCC-EEEEEEcC-----CCCEEEEEECCCcEEEEeCCCC-e-EEEE-Ee--CCCCce
Q 002490 70 GDDYKIKVWNYKMHRCLFTLLGHLDY-IRTVQFHH-----EYPWIVSASDDQTIRIWNWQSR-T-CISV-LT--GHNHYV 138 (916)
Q Consensus 70 ~~dg~I~vWd~~~~~~~~~l~~h~~~-v~~v~fs~-----~~~~l~s~s~dg~I~iwd~~~~-~-~~~~-~~--~h~~~v 138 (916)
.....|.-.|++.|+.+.....|... |..++-.. +....+.|-.+..+..||.+-. . ++.. .. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 45678999999999999999877754 55443321 1224566777888999998742 2 2211 11 133456
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCE
Q 002490 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (916)
Q Consensus 139 ~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 218 (916)
.|++-+.+| +||+|+.+|.||+||--+.+. +..+.+-..+|..+..+.||++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~A---------------------------KT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRA---------------------------KTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhh---------------------------hhcCCCCCCCeeEEEecCCCcE
Confidence 777777665 899999999999999543222 2355567789999999999999
Q ss_pred EEEEECCCcEEEEEC
Q 002490 219 IVSGADDRQVKLWRM 233 (916)
Q Consensus 219 l~~~~~dg~v~iwd~ 233 (916)
+++.+ +..+.+++.
T Consensus 633 ilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 633 ILATC-KTYLLLIDT 646 (794)
T ss_pred EEEee-cceEEEEEE
Confidence 88877 556667664
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.18 Score=52.96 Aligned_cols=230 Identities=12% Similarity=0.101 Sum_probs=126.6
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee-
Q 002490 210 AAFHPTLPL-IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR- 287 (916)
Q Consensus 210 ~~~~p~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~- 287 (916)
-.|.++... +.+--..+.|.-|+..+++ ...+... +.+.++..-..+..|+++.. .+.+++..++.....+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~---~~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK---KRVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc---eEEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 356777764 4444467888999988766 3333333 33344444334445555533 36666765555422221
Q ss_pred ----ccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCC
Q 002490 288 ----REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (916)
Q Consensus 288 ----~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 363 (916)
....+...+.+.|+|.+.+..... +. .....-. ..+.++.++. .+.......- +
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~----~~--~~~~~~~---------~~G~lyr~~p-~g~~~~l~~~----~-- 161 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGY----FD--LGKSEER---------PTGSLYRVDP-DGGVVRLLDD----D-- 161 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCc----cc--cCccccC---------CcceEEEEcC-CCCEEEeecC----c--
Confidence 112456678888888877654432 11 0000000 1233344443 2322222211 0
Q ss_pred CCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC--CC-CCC-ccccccccCceeEEEEEeCCcEEEEEcCCC-EEEE
Q 002490 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD--SI-GRG-DSVQDAKKGLGGSAIFIARNRFAVLDKSSN-QVLV 438 (916)
Q Consensus 364 ~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~--~~-~~~-~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~-~I~i 438 (916)
-.....|+||||++.+.++-. ..+.+.-|.+... .. ... ........+.--.++...+|.+-+.+..++ .|.+
T Consensus 162 -~~~~NGla~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 162 -LTIPNGLAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred -EEecCceEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence 115567999999997766654 4456666666531 11 110 001122334455677777888775544343 9999
Q ss_pred EccCCceEEEeeCC-CceeEEEEeCC--ceEEEE
Q 002490 439 KNLKNEVVKKSILP-IAADAIFYAGT--GNLLCR 469 (916)
Q Consensus 439 wdl~~~~~~~i~~~-~~v~~l~~s~~--g~~l~~ 469 (916)
|+.+++.+..+..| ..+++++|... ..+.++
T Consensus 240 ~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 240 FNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ECCCCcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 99999999999999 48888888775 344444
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.22 E-value=0.1 Score=56.14 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=92.9
Q ss_pred CCEEEEEec---------C-CeEEEEECCCC----ceEEEe--cccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 002490 21 RPWILASLH---------S-GVIQLWDYRMG----TLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (916)
Q Consensus 21 ~~~la~~~~---------d-g~I~lwd~~~~----~~~~~~--~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~ 84 (916)
.+++++|+. . |.|.++++... ..+..+ ....++|++++-- ++ +|+.+. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 578888854 2 89999999884 222222 2468899999877 33 455444 3699999998777
Q ss_pred -eEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEE--eCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 85 -CLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVL--TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 85 -~~~~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~-~~~~~~~--~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
....-. .....+.++... +++++.|...+.+.++.++. ...+..+ ......++++.|.++++.++.+..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 333222 223366666655 45899999888888885543 3323322 2345668999998777899999999999
Q ss_pred EEEECCC
Q 002490 160 RVWDIGA 166 (916)
Q Consensus 160 ~vwd~~~ 166 (916)
.++....
T Consensus 197 ~~l~~~~ 203 (321)
T PF03178_consen 197 FVLRYNP 203 (321)
T ss_dssp EEEEE-S
T ss_pred EEEEECC
Confidence 9998753
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0065 Score=70.52 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=76.2
Q ss_pred CCCEEEEEecCCeEEEEECCCC-ceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEE
Q 002490 20 KRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRT 98 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~-~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~ 98 (916)
.+.+++.|+..|.|...|+... .....=+.-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567889999999999987542 111222335789999999999999999999999999999999999888777665555
Q ss_pred EE---EcCCCCEEEEEECCCcEEEEeC
Q 002490 99 VQ---FHHEYPWIVSASDDQTIRIWNW 122 (916)
Q Consensus 99 v~---fs~~~~~l~s~s~dg~I~iwd~ 122 (916)
+- +..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 43 4455667778777775 5654
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0012 Score=44.66 Aligned_cols=39 Identities=36% Similarity=0.709 Sum_probs=34.7
Q ss_pred CceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 41 ~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd 79 (916)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677778999999999999999999999999999996
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.12 Score=51.30 Aligned_cols=246 Identities=13% Similarity=0.144 Sum_probs=131.9
Q ss_pred EEEEEecCCC-EEEEEECCCe-EEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCC
Q 002490 139 MCASFHPKED-LVVSASLDQT-VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (916)
Q Consensus 139 ~~l~~~p~~~-~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 216 (916)
..++|+|... -++.+-.-|+ ..++|..+.+........ ...-+.+| =.|||+|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-------------------~~RHfyGH------Gvfs~dG 125 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-------------------EGRHFYGH------GVFSPDG 125 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-------------------cCceeecc------cccCCCC
Confidence 3477888654 5666666665 567888776554322110 00122233 3699999
Q ss_pred CEEEEEEC-----CCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeC------------------CCcEE
Q 002490 217 PLIVSGAD-----DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE------------------DKSIR 273 (916)
Q Consensus 217 ~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~------------------dg~i~ 273 (916)
.+|...-. -|.|-+||.+.. ...+..+..|.-....+.|.+||+.++.+.. .-++.
T Consensus 126 ~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 126 RLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred cEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence 98887654 367999999843 3347778888888889999999999887642 11234
Q ss_pred EEECCCCceeEEeec----cCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEE-eCCeEEEEEccCC
Q 002490 274 VWDVTKRTGVQTFRR----EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQ 348 (916)
Q Consensus 274 vwd~~~~~~~~~~~~----~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~-~d~~i~~~d~~~~ 348 (916)
+.|..++..+..... +.-.+..++..+++..++.+--.|-. .+.| ..+... ..+-+...++...
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~-----~d~p------pLvg~~~~g~~l~~~~~pee 273 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR-----NDLP------PLVGHFRKGEPLEFLDLPEE 273 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC-----ccCC------cceeeccCCCcCcccCCCHH
Confidence 444444444433221 22345556666666554433211100 0000 000000 2233333333221
Q ss_pred ceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEE
Q 002490 349 KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAV 428 (916)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~ 428 (916)
+.. .+...|-+++.+.+...+++++. .++.+.+|+.......... .+.. +..++ ...+-|++
T Consensus 274 ~~~-----------~~anYigsiA~n~~~glV~lTSP-~GN~~vi~da~tG~vv~~a-~l~d----aaGva-~~~~gf~v 335 (366)
T COG3490 274 QTA-----------AFANYIGSIAANRRDGLVALTSP-RGNRAVIWDAATGAVVSEA-ALPD----AAGVA-AAKGGFAV 335 (366)
T ss_pred HHH-----------HHHhhhhheeecccCCeEEEecC-CCCeEEEEEcCCCcEEecc-cccc----cccce-eccCceEE
Confidence 111 11227788999988888777776 6678999998655432111 0100 11111 12244666
Q ss_pred EEcCCCEEEEEc
Q 002490 429 LDKSSNQVLVKN 440 (916)
Q Consensus 429 ~~~~d~~I~iwd 440 (916)
+.+ +|.+..++
T Consensus 336 ssg-~G~~~~~s 346 (366)
T COG3490 336 SSG-QGRIIFYS 346 (366)
T ss_pred ecC-CceEEecc
Confidence 555 78777764
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.002 Score=70.40 Aligned_cols=93 Identities=8% Similarity=0.117 Sum_probs=75.7
Q ss_pred ccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEE-EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 51 ~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~-~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999988 888888886777777 99999999999999999999999999887665
Q ss_pred EEe-CCCCceEEEEEe
Q 002490 130 VLT-GHNHYVMCASFH 144 (916)
Q Consensus 130 ~~~-~h~~~v~~l~~~ 144 (916)
... .....|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 421 123344555554
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.13 E-value=0.055 Score=46.23 Aligned_cols=100 Identities=12% Similarity=0.192 Sum_probs=69.9
Q ss_pred EEEEEEec---C-CCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 54 VRGVHFHK---S-QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 54 V~~i~fsp---~-~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
|+++++.. + .+.|++|++|..|++|+-. ..+.++. -.+.|++++-... ..++.+..+|+|-+|+-. +.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 67777754 2 2579999999999999843 6677776 4566777776665 569999999999999853 3334
Q ss_pred EEeCCCCceEEEEEec-CC---CEEEEEECCCeEE
Q 002490 130 VLTGHNHYVMCASFHP-KE---DLVVSASLDQTVR 160 (916)
Q Consensus 130 ~~~~h~~~v~~l~~~p-~~---~~l~s~s~dg~v~ 160 (916)
..+. .+.++++.+.. ++ ..|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443 23467776654 22 2788888888764
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.27 Score=49.06 Aligned_cols=182 Identities=11% Similarity=0.082 Sum_probs=112.0
Q ss_pred CeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcC---CCCEEEEEEeeCCCCCCCccccccccCc
Q 002490 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV---DGGSYELYVIPKDSIGRGDSVQDAKKGL 414 (916)
Q Consensus 338 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~---~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 414 (916)
....++|..+.+...++......| ..-.=.|||||.+|..+-+. ..|.|-+|+....-. .+- ....|.-.
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RH-----fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq-rvg-E~~t~GiG 163 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRH-----FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-RVG-EFSTHGIG 163 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCce-----eecccccCCCCcEEEeecCCCCCCCceEEEEecccccc-eec-ccccCCcC
Confidence 345678888876666555443222 33345799999986655432 347899999873322 111 34455545
Q ss_pred eeEEEEEeCCcEEEEEcC------------------CCEEEEEc-cCCceEEEeeCCC-----ceeEEEEeCCceEEEE-
Q 002490 415 GGSAIFIARNRFAVLDKS------------------SNQVLVKN-LKNEVVKKSILPI-----AADAIFYAGTGNLLCR- 469 (916)
Q Consensus 415 i~~~~fs~~~~~l~~~~~------------------d~~I~iwd-l~~~~~~~i~~~~-----~v~~l~~s~~g~~l~~- 469 (916)
-..+.+.+||+.++.+.. .-++.+.| ..+..+.+...+. .+..+...+||++++-
T Consensus 164 pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 164 PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 567899999999998862 01223333 2344444444441 7899999999998875
Q ss_pred ---E---CCEEEEEEcCCCeEEEEEEc---------CCeeEEEEcCCCCEEEEEe--CCeEEEEecCCcceEEE
Q 002490 470 ---A---EDRVVIFDLQQRLVLGDLQT---------PFVKYVVWSNDMESVALLS--KHAIIIASKKLVHQCTL 526 (916)
Q Consensus 470 ---~---d~~v~l~d~~~~~~~~~~~~---------~~v~~v~~s~d~~~la~~~--~~~i~i~~~~~~~~~~~ 526 (916)
. |---.+=-...++.+.-+.. ..|-+|+.+.+..++++.+ .+...+||..++.+...
T Consensus 244 Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 244 QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 1 11111111233444433331 5577889988888888887 67899999999886543
No 385
>PRK10115 protease 2; Provisional
Probab=97.10 E-value=0.75 Score=54.77 Aligned_cols=240 Identities=10% Similarity=0.095 Sum_probs=120.6
Q ss_pred CeeEEEEcCCCCEEEEEECC-----CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCC------CcEEE
Q 002490 206 GVNWAAFHPTLPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED------KSIRV 274 (916)
Q Consensus 206 ~v~~~~~~p~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~d------g~i~v 274 (916)
.+..+.++|++++|+.+.+. ..|++.|+.++.. +....... -..++|++|++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 46678899999988876543 2588889887763 21111111 1459999999877666542 25777
Q ss_pred EECCCC--ceeEEeeccCCcEEEEEE-ecCCCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEcc--CCc
Q 002490 275 WDVTKR--TGVQTFRREHDRFWILAS-HPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS--TQK 349 (916)
Q Consensus 275 wd~~~~--~~~~~~~~~~~~i~~l~~-sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~--~~~ 349 (916)
+++.++ +....+.......+...+ +.+++++.....++ .++.+.+++.. ++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----------------------~~~~~~l~~~~~~~~~ 260 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----------------------TTSEVLLLDAELADAE 260 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----------------------ccccEEEEECcCCCCC
Confidence 777766 333333333333332222 32555544333211 23456666632 233
Q ss_pred eeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccc--cCceeEEEEEeCCcEE
Q 002490 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAK--KGLGGSAIFIARNRFA 427 (916)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--~~~i~~~~fs~~~~~l 427 (916)
......... + ....+. ..+..+.+.+..+....+|..++-....... ....+ ...+..+.++ .+.++
T Consensus 261 ~~~~~~~~~-~------~~~~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~-~~~l~ 329 (686)
T PRK10115 261 PFVFLPRRK-D------HEYSLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLF-TDWLV 329 (686)
T ss_pred ceEEEECCC-C------CEEEEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEE-CCEEE
Confidence 222222111 1 111222 2234555555434445666665433221111 22222 2356677776 44555
Q ss_pred EEEcCCCEE--EEEccCCceEEEeeC--CCceeEEEEe--CC-ceEEEE-----ECCEEEEEEcCCCe
Q 002490 428 VLDKSSNQV--LVKNLKNEVVKKSIL--PIAADAIFYA--GT-GNLLCR-----AEDRVVIFDLQQRL 483 (916)
Q Consensus 428 ~~~~~d~~I--~iwdl~~~~~~~i~~--~~~v~~l~~s--~~-g~~l~~-----~d~~v~l~d~~~~~ 483 (916)
++...++.- .++++.+.....+.. +..+..+..+ ++ +.++++ ....++.||+.+++
T Consensus 330 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 330 VEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 555556654 445554545555543 2233333344 33 344443 46788888887764
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.062 Score=62.04 Aligned_cols=186 Identities=10% Similarity=0.044 Sum_probs=102.5
Q ss_pred cCEEEEEEecCCCEEEEEE------CCC--eEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECC-CcEEEE--
Q 002490 52 GPVRGVHFHKSQPLFVSGG------DDY--KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-QTIRIW-- 120 (916)
Q Consensus 52 ~~V~~i~fsp~~~~l~s~~------~dg--~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d-g~I~iw-- 120 (916)
..+.+.+++|+|..++... .|+ .|.+++.. +.. ..+.. ....+.-.|+|+|.++++.++. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999877665 244 45555542 222 33322 2237888999999888877643 222233
Q ss_pred ---------eCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEE---EECCCCcceeccCCccceeeccccccc
Q 002490 121 ---------NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV---WDIGALRKKTVSPADDILRLSQMNTDL 188 (916)
Q Consensus 121 ---------d~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (916)
++..+.... ...+.|..+.|+|||..++... ++.|.+ -....+......
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~--------------- 487 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTN--------------- 487 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecc---------------
Confidence 333222211 2346799999999999888766 467766 332232211000
Q ss_pred cccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEEC--CCCcceeeeeeec--CCCCeEEEEEccCCCEEE
Q 002490 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM--NETKAWEVDTLRG--HMNNVSCVMFHAKQDIIV 264 (916)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~ 264 (916)
......+-...+..+.|.+++.++ ++..++...+|.+ ..... ..+.. ...++.+++=++. .++
T Consensus 488 -------~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~---~~~~~~n~~~~v~~vaa~~~--~iy 554 (591)
T PRK13616 488 -------PREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS---DALPSRNLSAPVVAVAASPS--TVY 554 (591)
T ss_pred -------cEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccc---cccCCCCccCceEEEecCCc--eEE
Confidence 011112223345788999998855 5555554445543 33321 11122 2456667766652 355
Q ss_pred EEeCCCcE
Q 002490 265 SNSEDKSI 272 (916)
Q Consensus 265 s~~~dg~i 272 (916)
....+|.+
T Consensus 555 v~~~~g~~ 562 (591)
T PRK13616 555 VTDARAVL 562 (591)
T ss_pred EEcCCceE
Confidence 55555533
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.57 Score=50.35 Aligned_cols=235 Identities=9% Similarity=0.096 Sum_probs=106.0
Q ss_pred CCCEEEEEe-cCCeEEEEECCC----CceEEEecc---cc-cC---EEEEEEecCCCEEEEEE------CCCeEEEEECC
Q 002490 20 KRPWILASL-HSGVIQLWDYRM----GTLIDRFDE---HD-GP---VRGVHFHKSQPLFVSGG------DDYKIKVWNYK 81 (916)
Q Consensus 20 ~~~~la~~~-~dg~I~lwd~~~----~~~~~~~~~---h~-~~---V~~i~fsp~~~~l~s~~------~dg~I~vWd~~ 81 (916)
++++|++.+ .++.|+|.|+.+ .++.+.++. +. .. -..+.--|+|..++|+- .-|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 567777766 678999999873 355555542 11 11 11222237888888862 23568888888
Q ss_pred CCeeEEEEecC---CCCEEEEEEcCCCCEEEEEEC--------------------CCcEEEEeCCCCeEEEEEeCCC--C
Q 002490 82 MHRCLFTLLGH---LDYIRTVQFHHEYPWIVSASD--------------------DQTIRIWNWQSRTCISVLTGHN--H 136 (916)
Q Consensus 82 ~~~~~~~l~~h---~~~v~~v~fs~~~~~l~s~s~--------------------dg~I~iwd~~~~~~~~~~~~h~--~ 136 (916)
+.......... ...-..+.|.|..+.++|+.. ..++.+||+.+++.++++.--. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77777666432 234567788888888887643 3589999999999999987432 2
Q ss_pred ceEEEEEecC--CC-EEEEEECCCeEEEEEC-CCCcceeccCCccceeeccccccccccccceEEEEEec-------cCC
Q 002490 137 YVMCASFHPK--ED-LVVSASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG-------HDR 205 (916)
Q Consensus 137 ~v~~l~~~p~--~~-~l~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 205 (916)
.+..+.|..+ .. -++.+-...+|..|-- ..++-... ..+.+......- ..+.. -..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~----kVi~ip~~~v~~---------~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE----KVIDIPAKKVEG---------WILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE----EEEEE--EE--S---------S---GGGGGG-EE--
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee----EEEECCCcccCc---------ccccccccccccCCC
Confidence 3556777654 33 2333334555555543 22221100 000000000000 00000 134
Q ss_pred CeeEEEEcCCCCEEEEEE-CCCcEEEEECCCCccee-eeeee--c--------------CCCCeEEEEEccCCCEEEEEe
Q 002490 206 GVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWE-VDTLR--G--------------HMNNVSCVMFHAKQDIIVSNS 267 (916)
Q Consensus 206 ~v~~~~~~p~~~~l~~~~-~dg~v~iwd~~~~~~~~-~~~~~--~--------------~~~~v~~l~~sp~~~~l~s~~ 267 (916)
-|+.+..|.|.++|.++. .+|.|+.||+....... +.++. + -.+...-+..|-||+.|...+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 578899999999887766 58999999998765421 11111 0 112235567777777776654
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.99 E-value=0.79 Score=50.08 Aligned_cols=271 Identities=11% Similarity=0.114 Sum_probs=149.9
Q ss_pred EEEEeCCCCEEEEEecCCeEEE---EEC-CCC----ceEEEec---ccc--cCEEEEEEec-----------CCCEEEEE
Q 002490 14 GLSFHSKRPWILASLHSGVIQL---WDY-RMG----TLIDRFD---EHD--GPVRGVHFHK-----------SQPLFVSG 69 (916)
Q Consensus 14 ~l~~sp~~~~la~~~~dg~I~l---wd~-~~~----~~~~~~~---~h~--~~V~~i~fsp-----------~~~~l~s~ 69 (916)
.++.+|++..||.+..+..+.+ |+. +.+ +...... .++ ..|+++.+-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999977776655 543 112 1221111 122 4677777643 35689999
Q ss_pred ECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCC---------CEEEEEECCCcEEEEeCCC--------------C-
Q 002490 70 GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY---------PWIVSASDDQTIRIWNWQS--------------R- 125 (916)
Q Consensus 70 ~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~---------~~l~s~s~dg~I~iwd~~~--------------~- 125 (916)
..+|.|++|.- +|..+..-.-|.++|..+.+.... .-|..... +.|.+.|-.+ +
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL~~~L~~~~~~~~~~~ 163 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSLFSVLRACRNQVARGA 163 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHHHHHHHHHHHhhhhhh
Confidence 99999999995 577666656688888888775311 22333333 3444443211 0
Q ss_pred ---------e--EEEEEe-CCCCceEEEEE--------------------------ec-CCCEEEEEECCCeEEEEECCC
Q 002490 126 ---------T--CISVLT-GHNHYVMCASF--------------------------HP-KEDLVVSASLDQTVRVWDIGA 166 (916)
Q Consensus 126 ---------~--~~~~~~-~h~~~v~~l~~--------------------------~p-~~~~l~s~s~dg~v~vwd~~~ 166 (916)
. ..+.+. ...+.+..+++ +| ....+++++.+-.+-.+-...
T Consensus 164 ~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G~~P~v~f~~~~e 243 (415)
T PF14655_consen 164 ASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVGSSPFVSFYYASE 243 (415)
T ss_pred hcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEecCCceEEEEEccC
Confidence 0 000000 11122222211 11 123566777777777777655
Q ss_pred CcceeccCC--------------ccceeeccccc------------cccccccceEEEEEeccCCCeeEEEEcCCCCEEE
Q 002490 167 LRKKTVSPA--------------DDILRLSQMNT------------DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (916)
Q Consensus 167 ~~~~~~~~~--------------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 220 (916)
+........ ...+....... .............+....+.+.+++.+|++++.+
T Consensus 244 ~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA 323 (415)
T PF14655_consen 244 GSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREGESICLSPSGRLAA 323 (415)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceEEEEEECCCCCEEE
Confidence 432211100 00000000000 0112223345667777788899999999999998
Q ss_pred EEECCCcEEEEECCCCcceeeeeeecCCCCeEE-EEEc-cC---------------CC--EEEEEeCCCcEEEEECCCCc
Q 002490 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC-VMFH-AK---------------QD--IIVSNSEDKSIRVWDVTKRT 281 (916)
Q Consensus 221 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-l~~s-p~---------------~~--~l~s~~~dg~i~vwd~~~~~ 281 (916)
+...-|.|.++|+..+.. ++.++|..+.=.. +... +. .. +++-.-.-|.|-||.++.+.
T Consensus 324 ~tDslGRV~LiD~~~~~v--vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 324 VTDSLGRVLLIDVARGIV--VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEcCCCcEEEEECCCChh--hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence 888889999999998876 5555554332111 0000 00 01 23445567889999998887
Q ss_pred eeEEeec
Q 002490 282 GVQTFRR 288 (916)
Q Consensus 282 ~~~~~~~ 288 (916)
.+..+..
T Consensus 402 Rv~a~~v 408 (415)
T PF14655_consen 402 RVAAFNV 408 (415)
T ss_pred EEEEEEe
Confidence 7766653
No 389
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.52 Score=47.34 Aligned_cols=184 Identities=11% Similarity=0.122 Sum_probs=106.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEe-CCCceEEEecCCcc----
Q 002490 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERP---- 323 (916)
Q Consensus 249 ~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~-~~~~~v~~~~~~~~---- 323 (916)
+-+..+.++ +++...+..+.-+++.|+.+......+..-+-.=..-.|.-.|++..++. +++..+.++.....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 445556665 46777777888899999987654333322111112223344577776655 88888888876432
Q ss_pred -----------eEEecCCEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCCCCEE
Q 002490 324 -----------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSY 391 (916)
Q Consensus 324 -----------~~s~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~~g~i 391 (916)
....+|++-+.+ .++-+.+.|+..........-...+. .+.++..+++.-++++.. .-+
T Consensus 165 grya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-----g~~sv~vsdnr~y~vvy~----egv 235 (370)
T COG5276 165 GRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-----GTYSVSVSDNRAYLVVYD----EGV 235 (370)
T ss_pred eeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC-----ceEEEEecCCeeEEEEcc----cce
Confidence 345678888888 99999999998865544443333221 677788887755444332 234
Q ss_pred EEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCc
Q 002490 392 ELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (916)
Q Consensus 392 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~ 444 (916)
.+-+.+...........+. .+....-.+.-.++++.....+.-+.+-|+.+.
T Consensus 236 livd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccCC
Confidence 4555554443222211111 111111133334566666666777777777653
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.94 E-value=0.081 Score=45.25 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=69.6
Q ss_pred EEEEEEeC-CC---CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEE
Q 002490 12 VKGLSFHS-KR---PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (916)
Q Consensus 12 V~~l~~sp-~~---~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~ 87 (916)
|+++++.. ++ +-|++|+.|..|++|+ ..+.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 67777765 32 5899999999999998 55778888754 45666666655 569999999999999853 4444
Q ss_pred EEecCCCCEEEEEEcC-C--C-CEEEEEECCCcEE
Q 002490 88 TLLGHLDYIRTVQFHH-E--Y-PWIVSASDDQTIR 118 (916)
Q Consensus 88 ~l~~h~~~v~~v~fs~-~--~-~~l~s~s~dg~I~ 118 (916)
..+... .+.++.+.. + | +-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444333 355555543 3 2 2688888788764
No 391
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0092 Score=68.58 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=76.5
Q ss_pred ccchhHHHHHHHCCCchhhcccccCcch---hhh-hhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 002490 622 LCGQAMIAYLQQKGFPEVALHFVKDERT---RFN-LALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQ 697 (916)
Q Consensus 622 ~~~~~i~~~l~~~~~~e~al~~~~~~~~---~f~-lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~ 697 (916)
..+..|..-....+.+|.|...++.-+. ... |--..|++|.|.+.|...+.|++|.+||++-|++|....|.+.|.
T Consensus 1049 yDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1049 YDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3345555555555666666555442221 112 223568999999999999999999999999999999999999999
Q ss_pred hhcC---ccchhhHHhhcCCHHHHHHHHHHH
Q 002490 698 RTKN---FERLSFLYLITGNMDKLSKMLKIA 725 (916)
Q Consensus 698 ~~~~---~~~l~~l~~~~g~~~~l~k~~~~~ 725 (916)
++.| |..+..+...+|+++.|.+...++
T Consensus 1129 kadDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1129 KADDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9766 555666777899999888766555
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.86 E-value=0.31 Score=50.11 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=104.9
Q ss_pred CeEEEEEccCCCEEEEEe---CCCcEEEEECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEEecCCcceEE
Q 002490 250 NVSCVMFHAKQDIIVSNS---EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFA 326 (916)
Q Consensus 250 ~v~~l~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~~~~~~s 326 (916)
.+.+.+++++++.++... ....++++... ....... ....+..-+|++++.+.++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~------------- 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGG------------- 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCc-------------
Confidence 688999999999887766 23345555433 3322222 3336777788888776666543222
Q ss_pred ecCCEEEEEeCCeEEEE-EccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEc-CCCCEEEEEEeeCCCCC--
Q 002490 327 VSGDSLFYAKDRFLRYY-EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD-VDGGSYELYVIPKDSIG-- 402 (916)
Q Consensus 327 ~~~~~l~~~~d~~i~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~-~~~g~i~i~~~~~~~~~-- 402 (916)
.+++ +..++...+ ..+..... ...|+.+.+||||..+++... ..++.+.+-.+.....+
T Consensus 89 -------------~~~~~~~~~g~~~~-~~v~~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~ 151 (253)
T PF10647_consen 89 -------------VRVVRDSASGTGEP-VEVDWPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP 151 (253)
T ss_pred -------------eEEEEecCCCccee-EEeccccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc
Confidence 2222 122222211 12221111 117899999999999988773 23478888777655544
Q ss_pred -CCccc---cccccCceeEEEEEeCCcEEEEEcCCCE-EEE-EccCCceEEEe-eCCCceeEEEEeCC-ceEEEEECCEE
Q 002490 403 -RGDSV---QDAKKGLGGSAIFIARNRFAVLDKSSNQ-VLV-KNLKNEVVKKS-ILPIAADAIFYAGT-GNLLCRAEDRV 474 (916)
Q Consensus 403 -~~~~~---~~~~~~~i~~~~fs~~~~~l~~~~~d~~-I~i-wdl~~~~~~~i-~~~~~v~~l~~s~~-g~~l~~~d~~v 474 (916)
.+..+ .......+..+.|.+++.+++.....+. +.. ....+.....+ .....+..+....+ +.++++.++.+
T Consensus 152 ~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~~ 231 (253)
T PF10647_consen 152 RRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGGV 231 (253)
T ss_pred ceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCCcE
Confidence 11111 1122456889999999999888865432 333 44555444333 12223333333333 23444444444
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.47 Score=47.91 Aligned_cols=204 Identities=10% Similarity=0.143 Sum_probs=127.3
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCC-CCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 002490 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~ 167 (916)
+.+-...+.++.|+|+.+.|++......-.+|=-.+|+.+.++.-. -+..-.+.+..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999999888888888877789998887521 233456788877777777778888888887664
Q ss_pred cceeccCCccceeeccccccccccccceEEEEEecc-CCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCc-ceeeeeee
Q 002490 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTLR 245 (916)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~ 245 (916)
........ ..+......+ +.+.-.++|.|....|..+-+-.-+.||...... ........
T Consensus 161 t~~~~~~~------------------~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~ 222 (316)
T COG3204 161 TTVISAKV------------------QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL 222 (316)
T ss_pred ccEEeccc------------------eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence 32221110 0011111122 5678889999999999988887777777665433 11111111
Q ss_pred cC-------CCCeEEEEEccC-CCEEEEEeCCCcEEEEECCCCceeEEeeccC---------CcEEEEEEecCCCeEEEE
Q 002490 246 GH-------MNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGVQTFRREH---------DRFWILASHPEMNLLAAG 308 (916)
Q Consensus 246 ~~-------~~~v~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~l~~sp~~~~la~g 308 (916)
.+ -..|+++.|++. +.+++-+.+++.+.-.|.. |..+..+.... ...-.++..++|++.+++
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 11 234778888874 4556666667777777754 44333332211 123456666666655554
Q ss_pred eCC
Q 002490 309 HDS 311 (916)
Q Consensus 309 ~~~ 311 (916)
-.+
T Consensus 302 EPn 304 (316)
T COG3204 302 EPN 304 (316)
T ss_pred cCC
Confidence 433
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.79 E-value=0.0042 Score=41.73 Aligned_cols=39 Identities=38% Similarity=0.623 Sum_probs=34.8
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe
Q 002490 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 83 ~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd 121 (916)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.36 Score=48.67 Aligned_cols=173 Identities=12% Similarity=0.086 Sum_probs=113.6
Q ss_pred cccccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEec-CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 002490 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (916)
Q Consensus 48 ~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~-h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~ 126 (916)
.+-...|+++.|+|+.+.|.+..+...-.||=...|+.+.++.- .-.....+.+..++++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 44455699999999999999888888888888888999888742 12234567888888888877778888888776442
Q ss_pred EEEE-------E--eCC-CCceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceE
Q 002490 127 CISV-------L--TGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (916)
Q Consensus 127 ~~~~-------~--~~h-~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (916)
.+.. + ..+ +...-.++|.|.+..|..+-+-.-+.++............. . .. .
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~------~-------~~----~ 224 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA------S-------LD----P 224 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc------c-------cC----c
Confidence 2211 1 112 55678899999999898888877788877663221110000 0 00 0
Q ss_pred EEEEeccCCCeeEEEEcC-CCCEEEEEECCCcEEEEECCCCc
Q 002490 197 KYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK 237 (916)
Q Consensus 197 ~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~v~iwd~~~~~ 237 (916)
.....-.-..|.++.|++ ++.+++.+.+++.+.-.|.....
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 000000123567788886 45677777778888777776654
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.69 E-value=1.4 Score=48.78 Aligned_cols=118 Identities=12% Similarity=0.126 Sum_probs=70.7
Q ss_pred cCCCeeEEEEcCC----CCEEEEEECCCcEEEEECCC-----Ccceeeeeeec---CCCCeEEEEEccCCCEEEEEeCCC
Q 002490 203 HDRGVNWAAFHPT----LPLIVSGADDRQVKLWRMNE-----TKAWEVDTLRG---HMNNVSCVMFHAKQDIIVSNSEDK 270 (916)
Q Consensus 203 ~~~~v~~~~~~p~----~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~~~dg 270 (916)
.-..|..++|.|- .+-+++......|.+|.+.. .+.....++.- ..--...+.|||....|++-+...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3456778888885 33455555678899998752 22111111111 011234678999999888776655
Q ss_pred cEEEEECCCCc-eeEEeeccCCcEEEEEEecCCCeEEEEeCCCc--eEEEecC
Q 002490 271 SIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGM--IVFKLER 320 (916)
Q Consensus 271 ~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~--~v~~~~~ 320 (916)
.-.++++.... .+..--...+.|.+.+|.+||+.++++-.+.+ ++|+-..
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 44455554322 22222245688999999999998887665554 4565443
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.65 E-value=0.11 Score=60.21 Aligned_cols=65 Identities=8% Similarity=0.060 Sum_probs=38.2
Q ss_pred CCCEEEEEECC------CcEEEEECCC-CcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC--cEEEEECCCCc
Q 002490 215 TLPLIVSGADD------RQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK--SIRVWDVTKRT 281 (916)
Q Consensus 215 ~~~~l~~~~~d------g~v~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg--~i~vwd~~~~~ 281 (916)
++.+.+.|+.+ ..+..||..+ .+-..+..++........+.+ ++.+.++|+.+| ++-.||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 35666667643 2467888887 443233444433333333333 778888998888 56666666544
No 398
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.64 E-value=0.96 Score=46.06 Aligned_cols=235 Identities=14% Similarity=0.139 Sum_probs=134.8
Q ss_pred EEEEEEecCCCEEEEEECCCeEEEEECC------CC-eeEEEEec-----CCCCEEEEEEcCCCC------------EEE
Q 002490 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYK------MH-RCLFTLLG-----HLDYIRTVQFHHEYP------------WIV 109 (916)
Q Consensus 54 V~~i~fsp~~~~l~s~~~dg~I~vWd~~------~~-~~~~~l~~-----h~~~v~~v~fs~~~~------------~l~ 109 (916)
-+.|+|+|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999998888888999999986 12 22334332 234677888875332 367
Q ss_pred EEECCCcEEEEeCCCCeE-----EEEEe-CCCCce-EEEEEecC--CCEEEEE-ECCCeEEEEECCCCcceeccCCccce
Q 002490 110 SASDDQTIRIWNWQSRTC-----ISVLT-GHNHYV-MCASFHPK--EDLVVSA-SLDQTVRVWDIGALRKKTVSPADDIL 179 (916)
Q Consensus 110 s~s~dg~I~iwd~~~~~~-----~~~~~-~h~~~v-~~l~~~p~--~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~ 179 (916)
.+++||+|.-|+..-+.. ...+. +....| ..+++... +++|..+ -..++|.++|-.-.+... +. .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g--~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PG--SF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CC--Cc
Confidence 889999999998643222 11221 112233 34455433 4555544 457889999865432211 00 00
Q ss_pred eeccc--cccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEc
Q 002490 180 RLSQM--NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257 (916)
Q Consensus 180 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 257 (916)
.-+.. ..--|+ ...-+..--|+...-.++.+.=+.|..-|.|-+||....-.. ...-.+.-+..+.++..
T Consensus 181 ~DP~iPagyAPFn-------Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 181 IDPALPAGYAPFN-------VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RVASSGRLNAPWGLAIA 252 (336)
T ss_pred cCCCCCCCCCCcc-------eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-EeccCCcccCCceeeeC
Confidence 00000 000000 001111111222333444444455556788999998765421 11223445567778876
Q ss_pred c------CCCEEEEEeCCCcEEEEECCCCceeEEeeccCC------cEEEEEEec
Q 002490 258 A------KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD------RFWILASHP 300 (916)
Q Consensus 258 p------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~~l~~sp 300 (916)
| .+.+|+-.-.||+|..||..+++.+..+....+ ..|.+++..
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6 577888888899999999999988877765443 457777765
No 399
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.63 E-value=0.034 Score=68.60 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=38.9
Q ss_pred hhhhcCCHHHHHHHHHHc------CCHHHHHHHHHHHHHcCChhHHHHHHHhhcC-----------ccchhhHHhhcCCH
Q 002490 653 LALESGNIQIAVASAKEI------DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN-----------FERLSFLYLITGNM 715 (916)
Q Consensus 653 lal~~g~~~~A~~~a~~~------~~~~~w~~la~~al~~g~~~~A~~~y~~~~~-----------~~~l~~l~~~~g~~ 715 (916)
...++|+++.|++....+ .+...|..|...+.+.|+++.|.+.|..+.. |..+...|+..|+.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 344556666665555443 2344556666666666666666665555432 12233445555555
Q ss_pred HHHHHHHHHHHHc
Q 002490 716 DKLSKMLKIAEVK 728 (916)
Q Consensus 716 ~~l~k~~~~~~~~ 728 (916)
+++.++.+.....
T Consensus 596 deA~elf~~M~e~ 608 (1060)
T PLN03218 596 DRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555444333
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.62 E-value=1.4 Score=47.55 Aligned_cols=258 Identities=15% Similarity=0.107 Sum_probs=120.3
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCce---EEEe----cccccCEEEEEEecC----CCEEEEEECC-------
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL---IDRF----DEHDGPVRGVHFHKS----QPLFVSGGDD------- 72 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~---~~~~----~~h~~~V~~i~fsp~----~~~l~s~~~d------- 72 (916)
..++|+|.|||+.++ +...|.|.+++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 568999999987655 45799999999 55554 2233 234566899999994 4444444321
Q ss_pred -CeEEEEECCCC-------eeEE-EEec---CCCCEEEEEEcCCCCEEEEEECCCc-------------EEEEeCCCCeE
Q 002490 73 -YKIKVWNYKMH-------RCLF-TLLG---HLDYIRTVQFHHEYPWIVSASDDQT-------------IRIWNWQSRTC 127 (916)
Q Consensus 73 -g~I~vWd~~~~-------~~~~-~l~~---h~~~v~~v~fs~~~~~l~s~s~dg~-------------I~iwd~~~~~~ 127 (916)
..|.-|.+..+ +.+. .+.. ....-..+.|.|||.+.++.++.+. |.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 24554554433 1111 1222 2345677999999976666554332 2222211 110
Q ss_pred -------------EEE-EeCCCCceEEEEEecC-CCEEEE-EECCCeEEEEECCCCcceeccCCccceeec--ccccccc
Q 002490 128 -------------ISV-LTGHNHYVMCASFHPK-EDLVVS-ASLDQTVRVWDIGALRKKTVSPADDILRLS--QMNTDLF 189 (916)
Q Consensus 128 -------------~~~-~~~h~~~v~~l~~~p~-~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~ 189 (916)
... -.++. ....++|+|. +++.++ .+.++.=.|--+..+..--........... .......
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000 01222 2457889998 544332 122222222222221110000000000000 0000000
Q ss_pred ccccceEEEEEeccCCCeeEEEEcC-------CCCEEEEEECCCcEEEEECCCCc-ceeeeee-ecCCCCeEEEEEccCC
Q 002490 190 GGVDAVVKYVLEGHDRGVNWAAFHP-------TLPLIVSGADDRQVKLWRMNETK-AWEVDTL-RGHMNNVSCVMFHAKQ 260 (916)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~~~~p-------~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~-~~~~~~v~~l~~sp~~ 260 (916)
..........+..| ..+..+.|.. .+.++++.-..+.|....+.... ......+ ......+..+++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 00011122233333 5566677764 34456665556677777776442 2222222 3344479999999999
Q ss_pred CEEEEEeCCCcEE
Q 002490 261 DIIVSNSEDKSIR 273 (916)
Q Consensus 261 ~~l~s~~~dg~i~ 273 (916)
.+.++...+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9998888888764
No 401
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.61 E-value=1 Score=45.94 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=125.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEECCC------C-ceeEEeec-----cCCcEEEEEEecCCCeEEEEeCCCceEE
Q 002490 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK------R-TGVQTFRR-----EHDRFWILASHPEMNLLAAGHDSGMIVF 316 (916)
Q Consensus 249 ~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~------~-~~~~~~~~-----~~~~i~~l~~sp~~~~la~g~~~~~~v~ 316 (916)
.+-+.++++|.+.+-++....+...+||... . ..+.++.. .....+.+.|+....+.+++...
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~----- 97 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI----- 97 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-----
Confidence 3467899999998888888888999999861 1 12222221 12345666666555443433210
Q ss_pred EecCCcceEEecCCEEEEEeCCeEEEEEccCCce---eeeEEecCCCCCCCCcCCeEEEEcCC--CCEEEEEEcCCCCEE
Q 002490 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD---TQVIPIRRPGSTSLNQSPRTLSYSPT--ENAVLICSDVDGGSY 391 (916)
Q Consensus 317 ~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~sp~--~~~llv~~~~~~g~i 391 (916)
+.....|+..++++|.-|...-+.. ...+.+....... --+.+++.+. +..| .+..-..++|
T Consensus 98 ---------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga---vYkGLAi~~~~~~~~L-YaadF~~g~I 164 (336)
T TIGR03118 98 ---------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN---VYKGLAVGPTGGGDYL-YAANFRQGRI 164 (336)
T ss_pred ---------ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc---eeeeeEEeecCCCceE-EEeccCCCce
Confidence 0111234555999999999654333 2223332211111 3344565533 4444 4444467899
Q ss_pred EEEEeeCCCCC---CCccc-cccccCc--ee------EEEEE---eCCcEEEEEcCCCEEEEEccCCceEEEeeCCC---
Q 002490 392 ELYVIPKDSIG---RGDSV-QDAKKGL--GG------SAIFI---ARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI--- 453 (916)
Q Consensus 392 ~i~~~~~~~~~---~~~~~-~~~~~~~--i~------~~~fs---~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~--- 453 (916)
.+|+-.-.... ....+ ...-..+ |. -+.|- ++.+.-+.+..-|.|-++|+.+..++++....
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LN 244 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLN 244 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCccc
Confidence 99975332210 00000 0000000 10 11111 12222222333579999999999999886655
Q ss_pred ceeEEEEeC------CceEEEE--ECCEEEEEEcCCCeEEEEEEc
Q 002490 454 AADAIFYAG------TGNLLCR--AEDRVVIFDLQQRLVLGDLQT 490 (916)
Q Consensus 454 ~v~~l~~s~------~g~~l~~--~d~~v~l~d~~~~~~~~~~~~ 490 (916)
....|+..| .|.+|+- .||+|..||..+++.+..+..
T Consensus 245 aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 245 APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 556676654 4788887 799999999999998887763
No 402
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.58 E-value=0.025 Score=68.24 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=90.5
Q ss_pred hhhhhcCCHHHHHHHHHHcC--CHHHHHHHHHHHHHcCChhHHHHHHHhhcC---------ccchhhHHhhcCCHHHHHH
Q 002490 652 NLALESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSK 720 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~~~--~~~~w~~la~~al~~g~~~~A~~~y~~~~~---------~~~l~~l~~~~g~~~~l~k 720 (916)
++..+||+++.|.+...++. +...|..|...+.+.|+.+.|.+.|.++.. |..+...+...|..++..+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 45667899999999888764 445799999999999999999999988654 3334444667888888777
Q ss_pred HHHHHHHc-CC------chhHHHHHHhcCCHHHHHHHHHHcCCchHH------HHHHHhcCChHHHHHHHHHh
Q 002490 721 MLKIAEVK-ND------VMGQFHNALYLGDVKERVKILESAGHLPLA------YITASVHGLQDVAERLAAEL 780 (916)
Q Consensus 721 ~~~~~~~~-~~------~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A------~~~a~~~g~~~~a~~l~~~~ 780 (916)
+.+..... +- +......+...|++++|.+++.+.+..+.+ +..++.+|..+.|.++++++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 76654332 11 112223344589999999999887754333 44567788888888887764
No 403
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.039 Score=59.34 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=101.1
Q ss_pred CCCEEE-EEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCE-------EEEEECCCeEEEEECCC-Ce-eEEEE
Q 002490 20 KRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPL-------FVSGGDDYKIKVWNYKM-HR-CLFTL 89 (916)
Q Consensus 20 ~~~~la-~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~-------l~s~~~dg~I~vWd~~~-~~-~~~~l 89 (916)
+.+.|+ .+.....++-.|++.|+.+...+-|+. |+-+.+.|+.+. -+.|-+|+.|.-||.+- +. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444443 444456688889999999999988777 888888887542 23455688999999872 22 22222
Q ss_pred ecC----CCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 90 LGH----LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 90 ~~h----~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
.+| .....|.+-..+| +|++||.+|.||+||--..+...-+++...+|..+..+.+|++|+..+ +..+.+.+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 222 2234555555555 799999999999999744444456788889999999999999887666 6677777764
Q ss_pred C
Q 002490 166 A 166 (916)
Q Consensus 166 ~ 166 (916)
-
T Consensus 501 ~ 501 (644)
T KOG2395|consen 501 I 501 (644)
T ss_pred c
Confidence 3
No 404
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.52 E-value=0.043 Score=61.06 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=84.1
Q ss_pred HHHCCCchhhcccccC-----cch------hhhhhhhcCCHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCh
Q 002490 631 LQQKGFPEVALHFVKD-----ERT------RFNLALESGNIQIAVASAKEIDE----------KDHWYRLGVEALRQGNA 689 (916)
Q Consensus 631 l~~~~~~e~al~~~~~-----~~~------~f~lal~~g~~~~A~~~a~~~~~----------~~~w~~la~~al~~g~~ 689 (916)
+...|..+.|+..++. |.. ...+..+.|+++.|.+.++.+-. ...|..+|..++.+|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 4455666666554421 111 12355677788877777664311 11355677777778888
Q ss_pred hHHHHHHHhhcCc--------cchhhHHhhcCCHHHHHHHHHHHHHcC-Cc-----hhHHHHHHhcCCHHHHHHHHHHcC
Q 002490 690 GIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKN-DV-----MGQFHNALYLGDVKERVKILESAG 755 (916)
Q Consensus 690 ~~A~~~y~~~~~~--------~~l~~l~~~~g~~~~l~k~~~~~~~~~-~~-----~~~~~~~~~~g~~~ea~~~~~~~g 755 (916)
+.|+.+|.++-.. -.+..+|...|+.+++.++.+.+.... .. ......+...|++++|++.|.++-
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877764321 134456667777777766655444322 11 112234445778888877777643
Q ss_pred C----chHH---HHHHHhcCChHHHHHHHHHh
Q 002490 756 H----LPLA---YITASVHGLQDVAERLAAEL 780 (916)
Q Consensus 756 ~----~~~A---~~~a~~~g~~~~a~~l~~~~ 780 (916)
+ ...+ ..+....|.+++|.+++++.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 1122 22334567777777776653
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.46 E-value=0.22 Score=57.63 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=119.6
Q ss_pred CCCEEEEEecC------CeEEEEECCCCceEEEecc-cccCEEEEEEecCCCEEEEEECC------CeEEEEECCCCeeE
Q 002490 20 KRPWILASLHS------GVIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQPLFVSGGDD------YKIKVWNYKMHRCL 86 (916)
Q Consensus 20 ~~~~la~~~~d------g~I~lwd~~~~~~~~~~~~-h~~~V~~i~fsp~~~~l~s~~~d------g~I~vWd~~~~~~~ 86 (916)
.+..+++|+.+ ..+..+|..+++......- +...-.+++.. ++.+.++||.| .++..||..+.+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 45667777776 3688889887744432221 22223344443 45788889888 35677787766543
Q ss_pred E--EEecCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeEEEEEeCCCCceEEE-EEecCCCEEEEEECCC-
Q 002490 87 F--TLLGHLDYIRTVQFHHEYPWIVSASDDQ-----TIRIWNWQSRTCISVLTGHNHYVMCA-SFHPKEDLVVSASLDQ- 157 (916)
Q Consensus 87 ~--~l~~h~~~v~~v~fs~~~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~h~~~v~~l-~~~p~~~~l~s~s~dg- 157 (916)
. .+........ .-.-+|...++|+.|| ++-.||..+.+--..-. ......+. .-.-+|...++|+.++
T Consensus 363 ~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCC
Confidence 3 1111111111 1123567778888886 47778876554222111 11111111 1122577777777554
Q ss_pred -----eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCC-----c
Q 002490 158 -----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-----Q 227 (916)
Q Consensus 158 -----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg-----~ 227 (916)
+|..||..+..-....+.. ... ... .++. -++.+.+.|+.|+ +
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~---------------------~~R----~~~-g~a~-~~~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMN---------------------TRR----SGF-GVAV-LNGKIYVVGGFDGTSALSS 492 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcc---------------------ccc----ccc-eEEE-ECCEEEEECCccCCCccce
Confidence 4677887765543322210 000 111 1222 2456777777665 3
Q ss_pred EEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCc-----EEEEECCCC
Q 002490 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-----IRVWDVTKR 280 (916)
Q Consensus 228 v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~-----i~vwd~~~~ 280 (916)
|..||..+.+...+.........+..+.+ ++...++|+.||. |-.||..+.
T Consensus 493 VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 77788888774333333333333333333 5677888887764 555655443
No 406
>PRK10115 protease 2; Provisional
Probab=96.45 E-value=3.1 Score=49.65 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=68.5
Q ss_pred CEEEEEEecCCCEEEEEEC-----CCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECC------CcEEEEe
Q 002490 53 PVRGVHFHKSQPLFVSGGD-----DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD------QTIRIWN 121 (916)
Q Consensus 53 ~V~~i~fsp~~~~l~s~~~-----dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~d------g~I~iwd 121 (916)
.+..+.|+|++++|+.+.+ ...|++-|+.++..+........ ..++|++|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677889999998887643 34799999988864433222222 469999999866555432 3677888
Q ss_pred CCCC--eEEEEEeCCCCceE-EEEEecCCCEEEEEEC---CCeEEEEECC
Q 002490 122 WQSR--TCISVLTGHNHYVM-CASFHPKEDLVVSASL---DQTVRVWDIG 165 (916)
Q Consensus 122 ~~~~--~~~~~~~~h~~~v~-~l~~~p~~~~l~s~s~---dg~v~vwd~~ 165 (916)
+.++ +-...+........ .+..+.++++++..+. ++.+.+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8877 33334443333333 3333437776655443 3468888853
No 407
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.42 E-value=0.067 Score=64.54 Aligned_cols=128 Identities=9% Similarity=0.041 Sum_probs=82.2
Q ss_pred hhhhhcCCHHHHHHHHHHcC--CHHHHHHHHHHHHHcCChhHHHHHHHhhcC---------ccchhhHHhhcCCHHHHHH
Q 002490 652 NLALESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSK 720 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~~~--~~~~w~~la~~al~~g~~~~A~~~y~~~~~---------~~~l~~l~~~~g~~~~l~k 720 (916)
.+..++|+++.|.+....+. +...|..|...+.+.|+++.|...|.++.. |..+...|+..|+.+++.+
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 45678899999999988764 456799999999999999999999977642 2233444566777777776
Q ss_pred HHHHHHHcCCc------hhHHHHHHhcCCHHHHHHHHHHcCCc-----hHHHHHHHhcCChHHHHHHHHH
Q 002490 721 MLKIAEVKNDV------MGQFHNALYLGDVKERVKILESAGHL-----PLAYITASVHGLQDVAERLAAE 779 (916)
Q Consensus 721 ~~~~~~~~~~~------~~~~~~~~~~g~~~ea~~~~~~~g~~-----~~A~~~a~~~g~~~~a~~l~~~ 779 (916)
+.+.....+-. ......+...|++++|.++|.+..+. .--+..+..+|+.++|.++.++
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66554444311 22233344577777777777654432 2233444455666666666554
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.42 E-value=1.5 Score=45.83 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=87.2
Q ss_pred EECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeeccCCcEEEEEEecC
Q 002490 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (916)
Q Consensus 222 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~ 301 (916)
.+..|.|.. ....++.|... .....+.+..+..+++|+++++++......-||.-...-...-+....++..+.|.|+
T Consensus 120 ~~~~G~iy~-T~DgG~tW~~~-~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 120 AGDRGAIYR-TTDGGKTWQAV-VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD 197 (302)
T ss_dssp EETT--EEE-ESSTTSSEEEE-E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT
T ss_pred EcCCCcEEE-eCCCCCCeeEc-ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC
Confidence 344554322 33455555433 3445577888999999999888876666677875432222333335678999999999
Q ss_pred CCeEEEEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEE
Q 002490 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (916)
Q Consensus 302 ~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~ll 381 (916)
+.+..++ .++.+.+.- ......-|... ..+.+..+ ..+..++|.+++...+
T Consensus 198 ~~lw~~~-~Gg~~~~s~-----------------~~~~~~~w~~~------~~~~~~~~-----~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 198 GNLWMLA-RGGQIQFSD-----------------DPDDGETWSEP------IIPIKTNG-----YGILDLAYRPPNEIWA 248 (302)
T ss_dssp S-EEEEE-TTTEEEEEE------------------TTEEEEE---------B-TTSS-------S-EEEEEESSSS-EEE
T ss_pred CCEEEEe-CCcEEEEcc-----------------CCCCccccccc------cCCcccCc-----eeeEEEEecCCCCEEE
Confidence 8877665 333322211 11223333321 11111111 1578899999877655
Q ss_pred EEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEE
Q 002490 382 ICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVK 439 (916)
Q Consensus 382 v~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iw 439 (916)
+.++ |.+ ++..+....-+..............+.|.++.+-++.+. +|.|.-|
T Consensus 249 ~gg~---G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G~ll~~ 301 (302)
T PF14870_consen 249 VGGS---GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DGVLLRY 301 (302)
T ss_dssp EEST---T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TTEEEEE
T ss_pred EeCC---ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC-CcEEEEe
Confidence 4443 443 334444443222212233455688899998888888887 7877655
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.085 Score=61.72 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=77.2
Q ss_pred CCCEEEEEECCCeEEEEECCCCee-EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEE
Q 002490 62 SQPLFVSGGDDYKIKVWNYKMHRC-LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC 140 (916)
Q Consensus 62 ~~~~l~s~~~dg~I~vWd~~~~~~-~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~ 140 (916)
.+..++.|++.|.+-..|+...-+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 455788899889998888764311 1111234568999999999999999999999999999999999999877777665
Q ss_pred EEE---ecCCCEEEEEECCCeEEEEECC
Q 002490 141 ASF---HPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 141 l~~---~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
+-+ ..++..++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 544 345557888877776 66653
No 410
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.26 E-value=0.08 Score=65.46 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=65.4
Q ss_pred hhhcCCHHHHHHHHHHcC------CHHHHHHHHHHHHHcCChhHHHHHHHhhcC---------ccchhhHHhhcCCHHHH
Q 002490 654 ALESGNIQIAVASAKEID------EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKL 718 (916)
Q Consensus 654 al~~g~~~~A~~~a~~~~------~~~~w~~la~~al~~g~~~~A~~~y~~~~~---------~~~l~~l~~~~g~~~~l 718 (916)
..++|+++.|.+..+++. +...|..|...+.+.|+++.|.+.|.++.. |..+...|+..|+.+++
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345555555555554432 445566666666666666666666655432 23344455556666665
Q ss_pred HHHHHHHHHc-----CC---chhHHHHHHhcCCHHHHHHHHHHcCCch---------HHHHHHHhcCChHHHHHHHHHhC
Q 002490 719 SKMLKIAEVK-----ND---VMGQFHNALYLGDVKERVKILESAGHLP---------LAYITASVHGLQDVAERLAAELG 781 (916)
Q Consensus 719 ~k~~~~~~~~-----~~---~~~~~~~~~~~g~~~ea~~~~~~~g~~~---------~A~~~a~~~g~~~~a~~l~~~~~ 781 (916)
.++.+..... .+ +......+...|++++|.++|.+..+.. ..+..+...|++++|.++.++..
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5554333221 11 0111222334666666666666554432 23344555666777777665543
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=96.25 E-value=2.2 Score=45.93 Aligned_cols=268 Identities=9% Similarity=0.051 Sum_probs=132.0
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEe----cccccCEEEEEEecCCCEEEEEECCCeEEEEECCC-C
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF----DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-H 83 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~----~~h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~-~ 83 (916)
...+.+|+|.....-+++| ++|.|..=. ..|+.=+.. .....++.++.|.++. .+++ +..+.|. ...+ +
T Consensus 45 ~~~l~~v~F~d~~~g~avG-~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~~-~~~~-G~~g~i~--~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVG-SNRTLLETN-DGGETWEERSLDLPEENFRLISISFKGDE-GWIV-GQPSLLL--HTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEE-CCCEEEEEc-CCCCCceECccCCcccccceeeeEEcCCc-EEEe-CCCceEE--EECCCC
Confidence 4578899998666666766 456543211 222211111 1123457788886543 3444 4444432 2222 2
Q ss_pred eeEEEEe---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEE-eCCCCceEEEEEecCCCEEEEEECCCeE
Q 002490 84 RCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (916)
Q Consensus 84 ~~~~~l~---~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~s~s~dg~v 159 (916)
+.-..+. ........+.....+...+ ++..|.|..=+ ..|+.-..+ ..-...+.++.+.|++.+++++. .|.+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i 195 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF 195 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence 2111111 0111112222222222233 33344333221 223222222 22345688899999876665554 5544
Q ss_pred EE-EECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCcc
Q 002490 160 RV-WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 160 ~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~ 238 (916)
.. ++-.. +. .......-...++.+.+.|+++.++++ ..|.+++=....+..
T Consensus 196 ~~s~~~gg-~t--------------------------W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 196 YSTWEPGQ-TA--------------------------WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred EEEcCCCC-Ce--------------------------EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 32 22111 10 111222334678899999999877765 467665333455555
Q ss_pred eeeeeee--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee---ccCCcEEEEEEecCCCeEEEEeCCCc
Q 002490 239 WEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---REHDRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 239 ~~~~~~~--~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
|...... .....+..+.+.|++..++ ++.+|.+. .....++.-+..+ ........+.+..+++.+++|..+-+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 4322221 1223578889999877555 44567554 3444444333332 12235777888877788887765544
Q ss_pred eE
Q 002490 314 IV 315 (916)
Q Consensus 314 ~v 315 (916)
+.
T Consensus 326 l~ 327 (334)
T PRK13684 326 LR 327 (334)
T ss_pred EE
Confidence 43
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=0.89 Score=48.96 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=84.1
Q ss_pred EEEcCCCCEEEEEEC------CCcEEEEECCCCcceeeeeeec---CCCCeEEEEEccCCCEEEEEeC------------
Q 002490 210 AAFHPTLPLIVSGAD------DRQVKLWRMNETKAWEVDTLRG---HMNNVSCVMFHAKQDIIVSNSE------------ 268 (916)
Q Consensus 210 ~~~~p~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~~~------------ 268 (916)
+-.-|+|+.++++-. -|.+.++|-.+... ...... ....-..+-|.|..+.++|+..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v--~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV--KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E--EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccc--cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 344577777776532 24577777766553 222222 1223456888998888888752
Q ss_pred --------CCcEEEEECCCCceeEEeeccCCc--EEEEEEec--CCCeEEEEe--CCCceEEEe-cCCc-----------
Q 002490 269 --------DKSIRVWDVTKRTGVQTFRREHDR--FWILASHP--EMNLLAAGH--DSGMIVFKL-ERER----------- 322 (916)
Q Consensus 269 --------dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp--~~~~la~g~--~~~~~v~~~-~~~~----------- 322 (916)
..++.+||+.+++.++++...... ...+.|.. +..+=.+|+ .+.+..|.- ..+.
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 347999999999999998865432 44555544 344433333 233332221 1100
Q ss_pred ------------------c------eEEecCCEEEEE--eCCeEEEEEccCCce-eeeEEecCCCC-----------CCC
Q 002490 323 ------------------P------AFAVSGDSLFYA--KDRFLRYYEFSTQKD-TQVIPIRRPGS-----------TSL 364 (916)
Q Consensus 323 ------------------~------~~s~~~~~l~~~--~d~~i~~~d~~~~~~-~~~~~~~~~~~-----------~~~ 364 (916)
| .++.+.++|++. ..+.++.||+..... ..+-++.-.+. ..+
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 0 466788888888 899999999988433 22222221110 011
Q ss_pred CcCCeEEEEcCCCCEEEEEEc
Q 002490 365 NQSPRTLSYSPTENAVLICSD 385 (916)
Q Consensus 365 ~~~i~~l~~sp~~~~llv~~~ 385 (916)
.+.+.-+..|-||+++.++++
T Consensus 373 ~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -S----EEE-TTSSEEEEE--
T ss_pred CCCCCeEEEccCCeEEEEEee
Confidence 224567899999999888765
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.11 E-value=2.2 Score=44.66 Aligned_cols=268 Identities=10% Similarity=0.077 Sum_probs=126.1
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEe--ccc---ccCEEEEEEecCCCEEEEEECCCeEEEEECCC
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLIDRF--DEH---DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~-~~~~~~--~~h---~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~ 82 (916)
...+..|.|.....-+++| ..+.| +...+| +-=... ... .-...+|.|..+ ..+++| ..+. .+-..+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~-ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL-LLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE-EEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce-EEEecCC
Confidence 3578999998666666666 45654 333333 211111 111 123567788654 344444 4443 3333333
Q ss_pred CeeEEEEe---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE-EEEEeCCCCceEEEEEecCCCEEEEEECCCe
Q 002490 83 HRCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (916)
Q Consensus 83 ~~~~~~l~---~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~ 158 (916)
++.-..+. .-......+....++. ...++..|.|..=. ..|+. ......-.+.+..+..+++|+++++++.-..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 43322221 1223334444444443 33344555443322 23322 2223445577888899999998888876666
Q ss_pred EEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEE-CCCCc
Q 002490 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR-MNETK 237 (916)
Q Consensus 159 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd-~~~~~ 237 (916)
..-||.-... ....-......|..+.|.|++.+.+++ ..|.|++=+ .....
T Consensus 168 ~~s~~~G~~~---------------------------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 168 YSSWDPGQTT---------------------------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp EEEE-TT-SS----------------------------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred EEEecCCCcc---------------------------ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 6677754311 111222346789999999998876654 788888877 22222
Q ss_pred ceeeeee--ecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEee---ccCCcEEEEEEecCCCeEEEEeCCC
Q 002490 238 AWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---REHDRFWILASHPEMNLLAAGHDSG 312 (916)
Q Consensus 238 ~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~~~~la~g~~~~ 312 (916)
.|..... ......+..++|.+++...++|+. |.+ +.....|+.=+..+ .-...+..+.|.++.+-++.|.++-
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 2222111 122335789999998887776664 444 33444454433332 2245678888888778888887654
Q ss_pred ce
Q 002490 313 MI 314 (916)
Q Consensus 313 ~~ 314 (916)
+.
T Consensus 298 ll 299 (302)
T PF14870_consen 298 LL 299 (302)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 414
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.34 Score=56.53 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=56.2
Q ss_pred hhhhhhhcCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcC
Q 002490 650 RFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKN 729 (916)
Q Consensus 650 ~f~lal~~g~~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~ 729 (916)
-|...+..|.++.++.+ +|++--|.||+.+..++.+.. +||.+- ++|..+.+ .-
T Consensus 416 YFg~LLdqGkLNk~ETL-----------EL~RpVL~Q~RkqLlekWl~E----dKLeCS-------EELGDlVK----~~ 469 (1666)
T KOG0985|consen 416 YFGTLLDQGKLNKYETL-----------ELCRPVLQQGRKQLLEKWLKE----DKLECS-------EELGDLVK----PY 469 (1666)
T ss_pred HHHHHHhcccccHHHHH-----------HHHHHHHhhhHHHHHHHHhhh----hhhhhh-------HHhcCccc----cC
Confidence 45666666655544332 344555566666665555543 222222 33333321 22
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHH
Q 002490 730 DVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAE 779 (916)
Q Consensus 730 ~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~ 779 (916)
+...+..+++..+=...++..|.++|+++.++..+++-|.--+...++++
T Consensus 470 d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~ 519 (1666)
T KOG0985|consen 470 DTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQ 519 (1666)
T ss_pred CchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHH
Confidence 33344455566666667777777777777777777777765555555544
No 415
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.04 E-value=0.098 Score=58.20 Aligned_cols=179 Identities=14% Similarity=0.031 Sum_probs=110.8
Q ss_pred HHHhcccHHHHHhhhccCcc-------cchhHHHHHHHCCCchhhccccc----Ccch--------h---hhhhhhcCCH
Q 002490 603 LSLLRKRYDHVMSMIRNSQL-------CGQAMIAYLQQKGFPEVALHFVK----DERT--------R---FNLALESGNI 660 (916)
Q Consensus 603 ~al~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~~~~~e~al~~~~----~~~~--------~---f~lal~~g~~ 660 (916)
.++..+++++|+..++.... ....+...+...|.++.|+...+ .+.. . -.+....|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 44556777777666543211 11223334555666666655432 1110 1 2344678999
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc-------------chhhHHhhcCCHHHHHHHH
Q 002490 661 QIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE-------------RLSFLYLITGNMDKLSKML 722 (916)
Q Consensus 661 ~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~-------------~l~~l~~~~g~~~~l~k~~ 722 (916)
+.|+...++. .+...+..++..+..+|+++.|..+|.++-... .+..+|+..|+.+++.+..
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9998887655 346678889999999999999999997753321 2344556788988887776
Q ss_pred HHHHHcCCc-----hhHHHHHHhcCCHHHHHHHHHHcCCc--h-------HHHHHHHhcCChHHHHHHHHHhC
Q 002490 723 KIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGHL--P-------LAYITASVHGLQDVAERLAAELG 781 (916)
Q Consensus 723 ~~~~~~~~~-----~~~~~~~~~~g~~~ea~~~~~~~g~~--~-------~A~~~a~~~g~~~~a~~l~~~~~ 781 (916)
+.+...... ......+...|++++|+++|.+.-.. + .........|.+++|.+.++++-
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 655432211 12234555689999999998886532 1 11234456788888888877643
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.02 E-value=1.4 Score=42.83 Aligned_cols=93 Identities=9% Similarity=-0.004 Sum_probs=63.0
Q ss_pred eEEEEcCCCCEEEE-EECCCcEEEEE--CCCCcce---eeeeeec----CCCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 002490 208 NWAAFHPTLPLIVS-GADDRQVKLWR--MNETKAW---EVDTLRG----HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 208 ~~~~~~p~~~~l~~-~~~dg~v~iwd--~~~~~~~---~~~~~~~----~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~ 277 (916)
+.++|+.+.+.+.. -+.+-.|.-|| ..++... .+..++. .......++...+|.+.++.-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 45778777665544 34455676677 4443321 1222222 1112234555668888888888999999999
Q ss_pred CCCceeEEeeccCCcEEEEEEec
Q 002490 278 TKRTGVQTFRREHDRFWILASHP 300 (916)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~l~~sp 300 (916)
.+|+.+.+++.+..++++++|--
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99999999999999999999864
No 417
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.11 Score=55.94 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=77.5
Q ss_pred eeEEEEcCCCC-------EEEEEECCCcEEEEECCCCcceeeeeeecC----CCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002490 207 VNWAAFHPTLP-------LIVSGADDRQVKLWRMNETKAWEVDTLRGH----MNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (916)
Q Consensus 207 v~~~~~~p~~~-------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~s~~~dg~i~vw 275 (916)
|+-+.+.|+.+ .-+.|-++..|.-||++-...-.+....+| .....|.+-..+| +|++||.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEee
Confidence 66677777543 234566788999999874332112222222 3456777776565 79999999999999
Q ss_pred ECCCCceeEEeeccCCcEEEEEEecCCCeEEEEeCCCceEEE
Q 002490 276 DVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (916)
Q Consensus 276 d~~~~~~~~~~~~~~~~i~~l~~sp~~~~la~g~~~~~~v~~ 317 (916)
|-........+++...+|..+..+.+|.++.+.++.-+++..
T Consensus 457 dri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 457 DRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred hhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 974444445577788899999999999999988877666544
No 418
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.00 E-value=0.13 Score=51.89 Aligned_cols=129 Identities=21% Similarity=0.151 Sum_probs=87.3
Q ss_pred hhhhhcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCc----------cchhhHHhhcCCHH
Q 002490 652 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF----------ERLSFLYLITGNMD 716 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~----------~~l~~l~~~~g~~~ 716 (916)
.+....|+++.|.+..+. -+++..|..+|.....+|+++.|+..|.++-.. ..+..+|...|+.+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 455677888888877653 245678889999999999999999999886331 23456677888888
Q ss_pred HHHHHHHHHHHcCCc-----hhHHHHHHhcCCHHHHHHHHHHcCC--------chHHHHHHHhcCChHHHHHHHHHh
Q 002490 717 KLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGH--------LPLAYITASVHGLQDVAERLAAEL 780 (916)
Q Consensus 717 ~l~k~~~~~~~~~~~-----~~~~~~~~~~g~~~ea~~~~~~~g~--------~~~A~~~a~~~g~~~~a~~l~~~~ 780 (916)
++.+..+.+...... .....++...|++++|.+++.++-+ +-.+..++...|..++|.++.+.+
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 877766554333221 1223445558999999988887422 123456667778888887776543
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.96 E-value=0.023 Score=40.43 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL 43 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~ 43 (916)
..+|++++|+|..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 468999999999999999999999999998 5543
No 420
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.94 E-value=0.17 Score=60.03 Aligned_cols=150 Identities=17% Similarity=0.112 Sum_probs=102.8
Q ss_pred HHHCCCchhhccccc-----Ccch------hhhhhhhcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHH
Q 002490 631 LQQKGFPEVALHFVK-----DERT------RFNLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEY 694 (916)
Q Consensus 631 l~~~~~~e~al~~~~-----~~~~------~f~lal~~g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~ 694 (916)
+..+|.++.|+..++ +|.. +-.+..+.|+++.|+..+.+ -+++..|..+|..+...|+++.|..
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 345666666666553 3332 22345688999999988754 2568899999999999999999999
Q ss_pred HHHhhcCcc--------chhhHHhhcCCHHHHHHHHHHHHHcCCch-----hHHHHHHhcCCHHHHHHHHHHcCCc----
Q 002490 695 AYQRTKNFE--------RLSFLYLITGNMDKLSKMLKIAEVKNDVM-----GQFHNALYLGDVKERVKILESAGHL---- 757 (916)
Q Consensus 695 ~y~~~~~~~--------~l~~l~~~~g~~~~l~k~~~~~~~~~~~~-----~~~~~~~~~g~~~ea~~~~~~~g~~---- 757 (916)
+|.++-..+ .+..+|...|+.+++....+.+....... ....++..+|++++|++.|.++-..
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 998864322 35567778899998887776654332221 2234455699999999998884332
Q ss_pred -----------hHHHHHHHhcCChHHHHHHHHHh
Q 002490 758 -----------PLAYITASVHGLQDVAERLAAEL 780 (916)
Q Consensus 758 -----------~~A~~~a~~~g~~~~a~~l~~~~ 780 (916)
..|..+....|++++|.++.+++
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12233444568888899888764
No 421
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.91 E-value=0.65 Score=53.81 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=100.6
Q ss_pred cCCCEEEEEECC------CeEEEEECCCCeeEEEEec-CCCCEEEEEEcCCCCEEEEEECC------CcEEEEeCCCCeE
Q 002490 61 KSQPLFVSGGDD------YKIKVWNYKMHRCLFTLLG-HLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTC 127 (916)
Q Consensus 61 p~~~~l~s~~~d------g~I~vWd~~~~~~~~~l~~-h~~~v~~v~fs~~~~~l~s~s~d------g~I~iwd~~~~~~ 127 (916)
..+.+++.||.+ ..+..+|..++.....-.- +...-.+++.. ++...++|+.| .++..||..+.+-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345567777766 3688888887644332211 22223344444 44677788877 3577888776653
Q ss_pred EE--EEeCCCCceEEEEEecCCCEEEEEECCCe-----EEEEECCCCcceeccCCccceeeccccccccccccceEEEEE
Q 002490 128 IS--VLTGHNHYVMCASFHPKEDLVVSASLDQT-----VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (916)
Q Consensus 128 ~~--~~~~h~~~v~~l~~~p~~~~l~s~s~dg~-----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (916)
.. .+....... +++. -+|...++|+.||. |-.||..+.+-....+.
T Consensus 362 ~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------------------------- 414 (571)
T KOG4441|consen 362 TPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------------------------- 414 (571)
T ss_pred eccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCC-------------------------
Confidence 22 222111111 1222 25778888888864 66677766443322211
Q ss_pred eccCCCeeEEEEcCCCCEEEEEECCC------cEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCc---
Q 002490 201 EGHDRGVNWAAFHPTLPLIVSGADDR------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS--- 271 (916)
Q Consensus 201 ~~~~~~v~~~~~~p~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~--- 271 (916)
....-......-+|.+.++|+.++ ++..||..+.+...+..+...........+ ++.+.+.||.|+.
T Consensus 415 --~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 415 --LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSAL 490 (571)
T ss_pred --CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCcc
Confidence 001111112223566777777543 577888888764333333322222222222 6778888887763
Q ss_pred --EEEEECCCCc
Q 002490 272 --IRVWDVTKRT 281 (916)
Q Consensus 272 --i~vwd~~~~~ 281 (916)
|-.||..+.+
T Consensus 491 ~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 491 SSVERYDPETNQ 502 (571)
T ss_pred ceEEEEcCCCCc
Confidence 6667766544
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.89 E-value=2.3 Score=43.03 Aligned_cols=154 Identities=7% Similarity=-0.006 Sum_probs=93.3
Q ss_pred EEEEEEeCCCCEEEEEecCC--eEEEEECCCCceEEEecccc-cCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEE
Q 002490 12 VKGLSFHSKRPWILASLHSG--VIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (916)
Q Consensus 12 V~~l~~sp~~~~la~~~~dg--~I~lwd~~~~~~~~~~~~h~-~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~ 88 (916)
..++.|..++.++-+.+.-| .|+.+|+.+|+......-.. --=-+++... +++....-.++...+||..+.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 45688877777777776655 79999999998876554211 1112344443 34555556789999999999999988
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeC--CC---CceEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--HN---HYVMCASFHPKEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 89 l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~l~s~s~dg~v~vwd 163 (916)
+.- .+.=+.++ .++..|+.+.....++++|..+-+....+.- .. ..+.-+.|. +|...+=.=....|...|
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 863 34445665 4566677777778899999988766665532 11 234556665 454444444455566666
Q ss_pred CCCCcce
Q 002490 164 IGALRKK 170 (916)
Q Consensus 164 ~~~~~~~ 170 (916)
..+++..
T Consensus 202 p~tG~V~ 208 (264)
T PF05096_consen 202 PETGKVV 208 (264)
T ss_dssp TTT-BEE
T ss_pred CCCCeEE
Confidence 6665543
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.81 E-value=0.0091 Score=57.38 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeeEEE-EecCCCCEEEE-EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCC-CceE
Q 002490 63 QPLFVSGGDDYKIKVWNYKMHRCLFT-LLGHLDYIRTV-QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-HYVM 139 (916)
Q Consensus 63 ~~~l~s~~~dg~I~vWd~~~~~~~~~-l~~h~~~v~~v-~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~-~~v~ 139 (916)
+.-++.|+.+|.|.+|+......... ...-...|.++ .--.++.+..+++.||.|+.|+.+-.+.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688899999999999872211111 11112223222 223345578899999999999999988888888787 5555
Q ss_pred EEEEecCCCEEEEE--ECCCeEEEEECCCC
Q 002490 140 CASFHPKEDLVVSA--SLDQTVRVWDIGAL 167 (916)
Q Consensus 140 ~l~~~p~~~~l~s~--s~dg~v~vwd~~~~ 167 (916)
....+..+..++++ |.|..++.|++...
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 55555566666666 77777777777653
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.78 E-value=2.6 Score=42.69 Aligned_cols=124 Identities=9% Similarity=0.085 Sum_probs=78.9
Q ss_pred ceEEEecccccC--EEEEEEecCCCEEEEEECCC--eEEEEECCCCeeEEEEecCCC-CEEEEEEcCCCCEEEEEECCCc
Q 002490 42 TLIDRFDEHDGP--VRGVHFHKSQPLFVSGGDDY--KIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQT 116 (916)
Q Consensus 42 ~~~~~~~~h~~~--V~~i~fsp~~~~l~s~~~dg--~I~vWd~~~~~~~~~l~~h~~-~v~~v~fs~~~~~l~s~s~dg~ 116 (916)
+.+.++. |+.. ..++.|..++.++-+.|.-| .|+.+|+.+++......-... .=-.++...+ ......=.++.
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSE
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCe
Confidence 4455554 5443 46788878888888887655 799999999988765542222 2233444433 33333455789
Q ss_pred EEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCcce
Q 002490 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (916)
Q Consensus 117 I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~ 170 (916)
..+||..+-+.+.++.- .+.=..++ .+++.|+.......++++|..+.+..
T Consensus 112 ~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 99999999999888863 34446666 46777777777888999998876544
No 425
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.72 E-value=0.032 Score=53.74 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=69.1
Q ss_pred CCEEEEEecCCeEEEEECCC-CceEEEecccccCEEEE-EEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCC-CCEE
Q 002490 21 RPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGV-HFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL-DYIR 97 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~-~~~~~~~~~h~~~V~~i-~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~-~~v~ 97 (916)
+..+++|+.+|.|.+|++.. |.....+..-..+|.++ .--.++.+..+++.||.|+.|+++..+.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 35688899999999999762 12222222222333332 222345578899999999999999888888777777 5555
Q ss_pred EEEEcCCCCEEEEE--ECCCcEEEEeCCC
Q 002490 98 TVQFHHEYPWIVSA--SDDQTIRIWNWQS 124 (916)
Q Consensus 98 ~v~fs~~~~~l~s~--s~dg~I~iwd~~~ 124 (916)
....+..+..++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555566666666 6677777777653
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.67 E-value=2.3 Score=41.39 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=116.3
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCC---CEEEEEECCCeEEEEECC--CCeeEEEEec-----
Q 002490 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ---PLFVSGGDDYKIKVWNYK--MHRCLFTLLG----- 91 (916)
Q Consensus 22 ~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~---~~l~s~~~dg~I~vWd~~--~~~~~~~l~~----- 91 (916)
.++.+--..|.|.-||+.+.+..+.- -...++.++.+--.+ .+.+.++..-.|.-||.. .-....++..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 34445555677777888765443321 111224444553222 344555555556667732 3333333211
Q ss_pred CCCCEEEEEEcCCCCEEEEEECC---------CcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCE-EEEEECCCeEEE
Q 002490 92 HLDYIRTVQFHHEYPWIVSASDD---------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDL-VVSASLDQTVRV 161 (916)
Q Consensus 92 h~~~v~~v~fs~~~~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~v~v 161 (916)
.......-..+|+|++.+-.-.| |.++.|-. +..+..+...-.--..++|+.+.+. -++-+.+-+|.-
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 12345556678999874322222 33333332 1112222222233356888877664 445566778877
Q ss_pred EE--CCCCcceeccCCccceeeccccccccccccceEEEEEec----cCCCeeEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002490 162 WD--IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG----HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (916)
Q Consensus 162 wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~ 235 (916)
|| ..++...... ..+.++. .....-.++...+|++.++.-..++|...|..+
T Consensus 185 ~dyd~~tG~~snr~----------------------~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRK----------------------VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred eecCCCcccccCcc----------------------eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence 88 4443321110 1111111 011122345567888999999999999999999
Q ss_pred CcceeeeeeecCCCCeEEEEEccC-CCEEEEE
Q 002490 236 TKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSN 266 (916)
Q Consensus 236 ~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~ 266 (916)
++. +.++.-....|+|++|--. -..+.+.
T Consensus 243 GK~--L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 243 GKI--LLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CcE--EEEEEcCCCceEEEEecCCCccEEEEE
Confidence 998 6667667889999999643 2344433
No 427
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.64 E-value=0.13 Score=61.05 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=52.6
Q ss_pred hhhcCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccc---------------hhhHHhhcC
Q 002490 654 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER---------------LSFLYLITG 713 (916)
Q Consensus 654 al~~g~~~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~---------------l~~l~~~~g 713 (916)
..+.|+++.|+...+.. +++..|..+|.....+|+++.|+.+|.++-..+. +..+|...|
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 34566777776665532 3466677777777777777777777766332211 011222346
Q ss_pred CHHHHHHHHHHHHHcC-Cc----hhHHHHHHhcCCHHHHHHHHHH
Q 002490 714 NMDKLSKMLKIAEVKN-DV----MGQFHNALYLGDVKERVKILES 753 (916)
Q Consensus 714 ~~~~l~k~~~~~~~~~-~~----~~~~~~~~~~g~~~ea~~~~~~ 753 (916)
+.+++.++.+.+.... +. .....+++.+|++++|+++|.+
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666665554432221 11 1223344456666666666544
No 428
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.63 E-value=0.033 Score=39.68 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.0
Q ss_pred cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeE
Q 002490 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (916)
Q Consensus 50 h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~ 86 (916)
...+|.+++|+|+..++|.++.+|.|.++.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3456999999999999999999999999998 55543
No 429
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.62 E-value=7 Score=46.56 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=60.5
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEe---cccccCEEEEEEecCC------CEEEEEECCCeEEEEECCCCeeEEEEe-
Q 002490 21 RPWILASLHSGVIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQ------PLFVSGGDDYKIKVWNYKMHRCLFTLL- 90 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~~~~~~~~---~~h~~~V~~i~fsp~~------~~l~s~~~dg~I~vWd~~~~~~~~~l~- 90 (916)
...++++..+|.+.-+-.........+ ..-+..|.|+++.++. ++++.++.|+.+++..+....++..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 445666667776655544322222233 2345678999997765 579999999999999998777776553
Q ss_pred -cCCCCEEEEEEc---CCC------CEEEEEECCCcEE
Q 002490 91 -GHLDYIRTVQFH---HEY------PWIVSASDDQTIR 118 (916)
Q Consensus 91 -~h~~~v~~v~fs---~~~------~~l~s~s~dg~I~ 118 (916)
+-..++.++.+- .++ -+|.+|-.+|.+.
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvll 666 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLL 666 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEE
Confidence 333444444443 222 1556666666544
No 430
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=95.60 E-value=3.8 Score=43.40 Aligned_cols=239 Identities=9% Similarity=0.080 Sum_probs=120.0
Q ss_pred CCCEEEEEecCCeEEEEECCC--CceEEEecccccCEEEEEEecCCCEEEEEEC-CCeEEEEECCCCee-----------
Q 002490 20 KRPWILASLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKMHRC----------- 85 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~--~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~-dg~I~vWd~~~~~~----------- 85 (916)
++++|+.|+.+| +.+.+... ++..+.+ +..+|+++...+..+.|++-++ ...++++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 336999999999 55555554 3444444 5678999999998887776654 34599999842211
Q ss_pred ----EEEEecCCCCEEEEEEcCC-CCEEEEEECCCcEEEEeCCCC--e--EEEEE---e-CCCCceEEEEEecC--CCEE
Q 002490 86 ----LFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSR--T--CISVL---T-GHNHYVMCASFHPK--EDLV 150 (916)
Q Consensus 86 ----~~~l~~h~~~v~~v~fs~~-~~~l~s~s~dg~I~iwd~~~~--~--~~~~~---~-~h~~~v~~l~~~p~--~~~l 150 (916)
.....+|............ ...++++....+|.++.+... + ....+ . .-..++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 1112234443333333322 223445555667888765432 1 11110 0 11223333333333 4577
Q ss_pred EEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccC-CCeeEEEEcCCCCEEEEEECCCcEE
Q 002490 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVK 229 (916)
Q Consensus 151 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~v~ 229 (916)
..|+..+...++++... ...+. +....+...... .++.... -+++.+++ +. |....
T Consensus 169 cvG~~~~~~~~~~~~~~---~~~~~-----------------d~sl~~~~~~~~~~p~~i~~-l~~~e~Ll-c~-~~~~v 225 (302)
T smart00036 169 CIGSDKGGGDVVQFHES---LVSKE-----------------DLSLPFLSEETSLKPISVVQ-VPRDEFLL-CY-DEFGV 225 (302)
T ss_pred EEEEcCCCCeEEEEeec---ccccc-----------------cccccccccccccCceEEEE-ECCCeEEE-EE-CcEEE
Confidence 77776423445554320 00000 000000111111 2333333 33444444 33 34455
Q ss_pred EEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 002490 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (916)
Q Consensus 230 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 288 (916)
+-|..+.+......+. -...+.++++. ..+++.-+. ..|.++++.++..++++..
T Consensus 226 ~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 226 FVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 5566542221122222 23455677776 356666654 4599999999998888864
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.56 E-value=1.3 Score=42.98 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=94.6
Q ss_pred eEEecC-CEEEEE-eCCeEEEEEccCCceeeeEEecCCCCCCCCcCCeEEEEcCCCCEEEEEEcCC-CC---EEEEEEee
Q 002490 324 AFAVSG-DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD-GG---SYELYVIP 397 (916)
Q Consensus 324 ~~s~~~-~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~~~~llv~~~~~-~g---~i~i~~~~ 397 (916)
.+...+ +.|+.+ ....|.+|++..........+... +.+..+.++..|+++++.-... .. .+++|---
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch------hheeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence 344444 566664 778899999996666666665543 2888999999999988765422 12 45555321
Q ss_pred CCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccC-CceEEEeeCCCceeEEEEeCC-ceEEEEECCEEE
Q 002490 398 KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFYAGT-GNLLCRAEDRVV 475 (916)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~~~~v~~l~~s~~-g~~l~~~d~~v~ 475 (916)
.... ....++. +... |. -+..+..+.. . .-.+-.++...++.+++..|- |++|+..++.+.
T Consensus 96 r~~~--------~~~~~v~-vRia--G~-~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~ 158 (215)
T PF14761_consen 96 RSQK--------EENSPVR-VRIA--GH-RVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLV 158 (215)
T ss_pred hhhc--------ccCCcEE-EEEc--cc-ccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEE
Confidence 1110 0011111 1000 10 0111111110 0 012334455557888888886 999999999999
Q ss_pred EEEcCCCeE-EEE-----EE--------cCCeeEEEEcCCCCEEEEEeCCeEEEEec
Q 002490 476 IFDLQQRLV-LGD-----LQ--------TPFVKYVVWSNDMESVALLSKHAIIIASK 518 (916)
Q Consensus 476 l~d~~~~~~-~~~-----~~--------~~~v~~v~~s~d~~~la~~~~~~i~i~~~ 518 (916)
+|.+..+.. ..+ +. .-.++.+++- +.|+|+.++..+.++..
T Consensus 159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 998755443 111 11 0223445543 57888888887777643
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.50 E-value=4.5 Score=43.56 Aligned_cols=113 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCC-
Q 002490 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT- 215 (916)
Q Consensus 137 ~v~~l~~~p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~- 215 (916)
..++|+|.|+++++++ ...|.|++++............ ..+..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~---------------------~~v~~~~~~gllgia~~p~f 60 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADL---------------------PEVFADGERGLLGIAFHPDF 60 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE----------------------TTTBTSTTBSEEEEEE-TTC
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceeccc---------------------ccccccccCCcccceecccc
Confidence 4578999999877664 5699999999333221110000 0012234567889999994
Q ss_pred ---CCEEEEEECC--------CcEEEEECCCC--cce----eeeeeec---CCCCeEEEEEccCCCEEEEEeCCCc
Q 002490 216 ---LPLIVSGADD--------RQVKLWRMNET--KAW----EVDTLRG---HMNNVSCVMFHAKQDIIVSNSEDKS 271 (916)
Q Consensus 216 ---~~~l~~~~~d--------g~v~iwd~~~~--~~~----~~~~~~~---~~~~v~~l~~sp~~~~l~s~~~dg~ 271 (916)
+.+.++.+.. ..|.-|..... ... .+..... ....-..+.|.|+|.+.++.+..+.
T Consensus 61 ~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 61 ASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp CCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 3333333321 23444444433 110 0111222 2334567999999987777776554
No 433
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.50 E-value=3.5 Score=42.35 Aligned_cols=153 Identities=11% Similarity=-0.046 Sum_probs=90.5
Q ss_pred CEEEEEEecCCCEEEEEE---CCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEe-CCCCeEE
Q 002490 53 PVRGVHFHKSQPLFVSGG---DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN-WQSRTCI 128 (916)
Q Consensus 53 ~V~~i~fsp~~~~l~s~~---~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd-~~~~~~~ 128 (916)
.+.+.++++++..++... ....+.++... ....... ....+..-.|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 33455555543 3333322 233778889999977555555566666664 2333222
Q ss_pred E-EEe--CCCCceEEEEEecCCCEEEEEE---CCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec
Q 002490 129 S-VLT--GHNHYVMCASFHPKEDLVVSAS---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (916)
Q Consensus 129 ~-~~~--~h~~~v~~l~~~p~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (916)
. .+. .....|..+.++|||..++... .++.|.+--+.......... -.........
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~------------------l~~~~~~~~~ 163 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR------------------LTGPRRVAPP 163 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce------------------eccceEeccc
Confidence 1 111 1112899999999999877665 34677776554322110000 0001112223
Q ss_pred cCCCeeEEEEcCCCCEEEEEECCC
Q 002490 203 HDRGVNWAAFHPTLPLIVSGADDR 226 (916)
Q Consensus 203 ~~~~v~~~~~~p~~~~l~~~~~dg 226 (916)
....+..++|.+++.+++.+...+
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCCC
Confidence 456789999999998777766544
No 434
>PHA02713 hypothetical protein; Provisional
Probab=95.37 E-value=0.38 Score=55.85 Aligned_cols=188 Identities=6% Similarity=-0.015 Sum_probs=91.0
Q ss_pred CCCEEEEEecC------CeEEEEECCCCceEEEecccccCEEEEEEecCCCEEEEEECCC-----eEEEEECCCCeeEE-
Q 002490 20 KRPWILASLHS------GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY-----KIKVWNYKMHRCLF- 87 (916)
Q Consensus 20 ~~~~la~~~~d------g~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg-----~I~vWd~~~~~~~~- 87 (916)
++...++|+.+ ..+..||..+.+....-.-....-......-++.+.+.||.++ ++..||..+.+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45556666643 3467778766643221110111111112233677888888653 48889988665432
Q ss_pred -EEecCCCCEEEEEEcCCCCEEEEEECC-----------------------CcEEEEeCCCCeEEE--EEeCCCCceEEE
Q 002490 88 -TLLGHLDYIRTVQFHHEYPWIVSASDD-----------------------QTIRIWNWQSRTCIS--VLTGHNHYVMCA 141 (916)
Q Consensus 88 -~l~~h~~~v~~v~fs~~~~~l~s~s~d-----------------------g~I~iwd~~~~~~~~--~~~~h~~~v~~l 141 (916)
.+.........+. -++...+.|+.+ .++..||..+.+-.. .+...... .++
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~ 459 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGV 459 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcE
Confidence 1111111111222 256666666644 247778877654322 22111111 122
Q ss_pred EEecCCCEEEEEECC------CeEEEEECCC-CcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcC
Q 002490 142 SFHPKEDLVVSASLD------QTVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (916)
Q Consensus 142 ~~~p~~~~l~s~s~d------g~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 214 (916)
+. -+++..+.|+.+ ..+..||..+ .+-....+ +.........+++
T Consensus 460 ~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-------------------------m~~~r~~~~~~~~-- 511 (557)
T PHA02713 460 VS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-------------------------TESRLSALHTILH-- 511 (557)
T ss_pred EE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-------------------------cCcccccceeEEE--
Confidence 22 246666666644 2356677765 33221111 1111111222222
Q ss_pred CCCEEEEEECCC--cEEEEECCCCcc
Q 002490 215 TLPLIVSGADDR--QVKLWRMNETKA 238 (916)
Q Consensus 215 ~~~~l~~~~~dg--~v~iwd~~~~~~ 238 (916)
++.+.++|+.++ .+..||..+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 567888888888 677788777664
No 435
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.34 E-value=0.26 Score=63.08 Aligned_cols=177 Identities=16% Similarity=0.042 Sum_probs=120.4
Q ss_pred HHhcccHHHHHhhhccC---ccc----chhHHHHHHHCCCchhhcccccCcc---------------------hhhhhhh
Q 002490 604 SLLRKRYDHVMSMIRNS---QLC----GQAMIAYLQQKGFPEVALHFVKDER---------------------TRFNLAL 655 (916)
Q Consensus 604 al~~~~~~~~~~~~~~~---~~~----~~~i~~~l~~~~~~e~al~~~~~~~---------------------~~f~lal 655 (916)
....|++++|...++.. .+. -.....|+..++.++.|+..+.... ...+...
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 45568888887765432 110 0112335667777777766543210 0123457
Q ss_pred hcCCHHHHHHHHHHc-CCHHHHHHHHHHHHHcCChhHHHHHHHhhcC--------ccchhhHHhhcCCHHHHHHHHHHHH
Q 002490 656 ESGNIQIAVASAKEI-DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAE 726 (916)
Q Consensus 656 ~~g~~~~A~~~a~~~-~~~~~w~~la~~al~~g~~~~A~~~y~~~~~--------~~~l~~l~~~~g~~~~l~k~~~~~~ 726 (916)
+.|+.+.|.++++.. +++..+..||..++++|+++.|+.+|.+.-. ...+..+|...|+.+++.++.+.+.
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 889999999998854 4567889999999999999999999987443 2245677888999999888877654
Q ss_pred HcC-C-ch---hHHHHHHhcCCHHHHHHHHHHcCCc-----h---HH------HHHHHhcCChHHHHHHHHHh
Q 002490 727 VKN-D-VM---GQFHNALYLGDVKERVKILESAGHL-----P---LA------YITASVHGLQDVAERLAAEL 780 (916)
Q Consensus 727 ~~~-~-~~---~~~~~~~~~g~~~ea~~~~~~~g~~-----~---~A------~~~a~~~g~~~~a~~l~~~~ 780 (916)
... + .. ....++...|++++|+++|.++-.. + .| -.+++..|++++|.+..+++
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 1 11 1234455699999999999986432 1 12 34578899999999997765
No 436
>PLN03077 Protein ECB2; Provisional
Probab=95.31 E-value=0.37 Score=59.81 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=88.0
Q ss_pred hhhhhcCCHHHHHHHHHHc-CCHHHHHHHHHHHHHcCChhHHHHHHHhhcC----ccch-----hhHHhhcCCHHHHHHH
Q 002490 652 NLALESGNIQIAVASAKEI-DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN----FERL-----SFLYLITGNMDKLSKM 721 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~~-~~~~~w~~la~~al~~g~~~~A~~~y~~~~~----~~~l-----~~l~~~~g~~~~l~k~ 721 (916)
++..+||+++.|.+..... .+...|..+...+.+.|+.+.|.+.|.++.+ .+.. ..-|...|+.++..++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 4567899999999887766 3456799999999999999999999988664 2333 3345567899988777
Q ss_pred HHHHH-HcCCch--hH----HHHHHhcCCHHHHHHHHHHcCCchHH------HHHHHhcCChHHHHHHHHHh
Q 002490 722 LKIAE-VKNDVM--GQ----FHNALYLGDVKERVKILESAGHLPLA------YITASVHGLQDVAERLAAEL 780 (916)
Q Consensus 722 ~~~~~-~~~~~~--~~----~~~~~~~g~~~ea~~~~~~~g~~~~A------~~~a~~~g~~~~a~~l~~~~ 780 (916)
.+... ..+... .. ...+...|+++||.+++.+....+.+ +..++.||..+.+...++++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66554 222211 11 22334589999999999987533222 23456677777666665543
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=95.08 E-value=6.1 Score=42.60 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCC-ce
Q 002490 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-EV 445 (916)
Q Consensus 367 ~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~-~~ 445 (916)
.+..+.+.|++..+++... |.+..-.-.....-.. ........+..+.+.++++.++++. .|.+.+-..++ ..
T Consensus 174 ~~~~i~~~~~g~~v~~g~~---G~i~~s~~~gg~tW~~--~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~s 247 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSR---GNFYSTWEPGQTAWTP--HQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLES 247 (334)
T ss_pred eEEEEEECCCCeEEEEeCC---ceEEEEcCCCCCeEEE--eeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCc
Confidence 6778899998765544333 4443210011111110 1122345578899999999887776 67776543443 22
Q ss_pred EEEeeCC-----CceeEEEEeCCceEEEEECCEEEEEEcCCCeEEEEEEc-----CCeeEEEEcCCCCEEEEEeCCeEEE
Q 002490 446 VKKSILP-----IAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLSKHAIII 515 (916)
Q Consensus 446 ~~~i~~~-----~~v~~l~~s~~g~~l~~~d~~v~l~d~~~~~~~~~~~~-----~~v~~v~~s~d~~~la~~~~~~i~i 515 (916)
-+.+..+ ..+..+.+.+++.+++.......+.....++.-..... .....+.|..+++.++++....|.-
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 2222322 25788899999888887544444455555555444321 3466788887888888777888877
Q ss_pred EecC
Q 002490 516 ASKK 519 (916)
Q Consensus 516 ~~~~ 519 (916)
++..
T Consensus 328 ~~~~ 331 (334)
T PRK13684 328 YVGS 331 (334)
T ss_pred ecCC
Confidence 6654
No 438
>PHA03098 kelch-like protein; Provisional
Probab=95.04 E-value=0.99 Score=52.57 Aligned_cols=144 Identities=10% Similarity=0.031 Sum_probs=68.8
Q ss_pred CCCEEEEEecCC------eEEEEECCCCceEEEec--ccccCEEEEEEecCCCEEEEEECC-----CeEEEEECCCCeeE
Q 002490 20 KRPWILASLHSG------VIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDD-----YKIKVWNYKMHRCL 86 (916)
Q Consensus 20 ~~~~la~~~~dg------~I~lwd~~~~~~~~~~~--~h~~~V~~i~fsp~~~~l~s~~~d-----g~I~vWd~~~~~~~ 86 (916)
++..++.|+.++ .+..||..+++....-. ........+ .-++.+++.||.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 345556665432 57778877765432111 111111222 2367778888765 35777887765533
Q ss_pred EEEec-CCCCEEEEEEcCCCCEEEEEECC------CcEEEEeCCCCeEEEE--EeCCCCceEEEEEecCCCEEEEEECC-
Q 002490 87 FTLLG-HLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLD- 156 (916)
Q Consensus 87 ~~l~~-h~~~v~~v~fs~~~~~l~s~s~d------g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~~p~~~~l~s~s~d- 156 (916)
..-.- +...-.+++ .-++...+.|+.+ ..+..||..+.+-... +..... -.++.. .++...+.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIY-HDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEE-ECCEEEEECCccC
Confidence 21110 111111222 2345556666532 4578889876543221 111111 112222 245566666543
Q ss_pred -------CeEEEEECCCCc
Q 002490 157 -------QTVRVWDIGALR 168 (916)
Q Consensus 157 -------g~v~vwd~~~~~ 168 (916)
..+.+||..+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCCcccceEEEecCCCCc
Confidence 137777776644
No 439
>PRK12370 invasion protein regulator; Provisional
Probab=94.96 E-value=0.32 Score=56.68 Aligned_cols=124 Identities=10% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHHHHHhhc--------CccchhhHHhhcCCHHHHHHHHHH
Q 002490 658 GNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTK--------NFERLSFLYLITGNMDKLSKMLKI 724 (916)
Q Consensus 658 g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~~y~~~~--------~~~~l~~l~~~~g~~~~l~k~~~~ 724 (916)
++++.|...+++ -+++..|..+|..+..+|+++.|+.+|.++- -+-.+..+|...|+.+++....+.
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 346666666543 2467778888888888888888888887622 122345566778888876666655
Q ss_pred HHHcCCch-----hHHHHHHhcCCHHHHHHHHHHcC-----CchHH-HHHH---HhcCChHHHHHHHHHhC
Q 002490 725 AEVKNDVM-----GQFHNALYLGDVKERVKILESAG-----HLPLA-YITA---SVHGLQDVAERLAAELG 781 (916)
Q Consensus 725 ~~~~~~~~-----~~~~~~~~~g~~~ea~~~~~~~g-----~~~~A-~~~a---~~~g~~~~a~~l~~~~~ 781 (916)
+....-.. .....+.+.|++++|+..+.+.- ..+.+ +.++ ...|+.++|.+.++++.
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 53332221 11223445788888888776641 11221 2222 34588888888876643
No 440
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.93 E-value=0.52 Score=47.44 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=88.8
Q ss_pred hhhhcCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------chhhHHhhcCCHHHHH
Q 002490 653 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLS 719 (916)
Q Consensus 653 lal~~g~~~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~--------~l~~l~~~~g~~~~l~ 719 (916)
.....|+++.|.+.+++. ++...|..+|..+..+|+++.|+..|.+.-... .+..+|...|+.+++.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 345677787777776532 356789999999999999999999998754322 3455677889999988
Q ss_pred HHHHHHHHcCC-------chhHHHHHHhcCCHHHHHHHHHHcCC----chHH----HHHHHhcCChHHHHHHHHHhC
Q 002490 720 KMLKIAEVKND-------VMGQFHNALYLGDVKERVKILESAGH----LPLA----YITASVHGLQDVAERLAAELG 781 (916)
Q Consensus 720 k~~~~~~~~~~-------~~~~~~~~~~~g~~~ea~~~~~~~g~----~~~A----~~~a~~~g~~~~a~~l~~~~~ 781 (916)
+..+.+..... ......++...|++++|++.|.++-. ...+ ..+....|++++|.+..++.-
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 120 QQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766644321 11223455669999999999977422 1122 234556788999988887654
No 441
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.92 E-value=0.41 Score=56.98 Aligned_cols=103 Identities=9% Similarity=-0.045 Sum_probs=60.1
Q ss_pred hhhhhcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCc-----c--chhhHHhhcCCHHHHH
Q 002490 652 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF-----E--RLSFLYLITGNMDKLS 719 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~-----~--~l~~l~~~~g~~~~l~ 719 (916)
.+..+.|+++.|.+.++. -+++..|..++..+...|+++.|..+|.+.-.. + .....++..|+.+++.
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~ 197 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDH 197 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Confidence 355677788877776653 245667777888888888888887777653111 0 0112345677777766
Q ss_pred HHHHHHHHcCC-c-----hhHHHHHHhcCCHHHHHHHHHHc
Q 002490 720 KMLKIAEVKND-V-----MGQFHNALYLGDVKERVKILESA 754 (916)
Q Consensus 720 k~~~~~~~~~~-~-----~~~~~~~~~~g~~~ea~~~~~~~ 754 (916)
...+....... . ......+...|++++|++.|.++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65544322211 0 11123344577777777777764
No 442
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.90 E-value=11 Score=44.89 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=39.3
Q ss_pred CEEEEEECCCcEEEEeCC-CCeEEEEE--eCCCCceEEEEEecCC------CEEEEEECCCeEEEEECCC
Q 002490 106 PWIVSASDDQTIRIWNWQ-SRTCISVL--TGHNHYVMCASFHPKE------DLVVSASLDQTVRVWDIGA 166 (916)
Q Consensus 106 ~~l~s~s~dg~I~iwd~~-~~~~~~~~--~~h~~~v~~l~~~p~~------~~l~s~s~dg~v~vwd~~~ 166 (916)
..++.+-.+|.+..+-.. ++++.... ..-+..|.|+++.++. ++++.++.|+++++..+..
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 345555556655555443 34333222 2334568888888764 4799999999999999874
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.24 Score=58.47 Aligned_cols=155 Identities=8% Similarity=0.023 Sum_probs=93.9
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCC-----------ceE-----EEeccc-ccCEEEEEEecCCCEEEEE--ECCC
Q 002490 13 KGLSFHSKRPWILASLHSGVIQLWDYRMG-----------TLI-----DRFDEH-DGPVRGVHFHKSQPLFVSG--GDDY 73 (916)
Q Consensus 13 ~~l~~sp~~~~la~~~~dg~I~lwd~~~~-----------~~~-----~~~~~h-~~~V~~i~fsp~~~~l~s~--~~dg 73 (916)
..++.++.-..+++++..+.+.++-..+. .++ ..+.-| .-+|..+...+|+...++. +.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 34566666666767767776766654221 111 122222 3345555566776654443 3444
Q ss_pred eEEEEECCCCeeE-----E------EEecCCCCEEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEE
Q 002490 74 KIKVWNYKMHRCL-----F------TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (916)
Q Consensus 74 ~I~vWd~~~~~~~-----~------~l~~h~~~v~~v~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l 141 (916)
.|..+|+++-... . +.........++.|+|.-. ..+.+..|+.|++..+........--.....++|+
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav 204 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV 204 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence 7889998743211 1 1112234566788888644 45667778889888764322221111245668999
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCC
Q 002490 142 SFHPKEDLVVSASLDQTVRVWDIGAL 167 (916)
Q Consensus 142 ~~~p~~~~l~s~s~dg~v~vwd~~~~ 167 (916)
+|+|.|+.+++|...|++.-|.....
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecccc
Confidence 99999999999999999999876553
No 444
>PLN03077 Protein ECB2; Provisional
Probab=94.81 E-value=0.39 Score=59.54 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=74.1
Q ss_pred hhhhhcCCHHHHHHHHHHcCCH--HHHHHHHHHHHHcCChhHHHHHHHhhcCc---------------------------
Q 002490 652 NLALESGNIQIAVASAKEIDEK--DHWYRLGVEALRQGNAGIVEYAYQRTKNF--------------------------- 702 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~~~~~--~~w~~la~~al~~g~~~~A~~~y~~~~~~--------------------------- 702 (916)
++..++|+++.|.+..+++.++ ..|..+...+.+.|+.+.|...|.++..-
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 4566778888888887776443 35777777777888888887777765421
Q ss_pred ----------------cchhhHHhhcCCHHHHHHHHHHHHHcCC---chhHHHHHHhcCCHHHHHHHHHHc---CCchH-
Q 002490 703 ----------------ERLSFLYLITGNMDKLSKMLKIAEVKND---VMGQFHNALYLGDVKERVKILESA---GHLPL- 759 (916)
Q Consensus 703 ----------------~~l~~l~~~~g~~~~l~k~~~~~~~~~~---~~~~~~~~~~~g~~~ea~~~~~~~---g~~~~- 759 (916)
..+...|...|+.+++.++.+.. ..+ .......+...|+.++|.++|.+. |-.|.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 12334455556666655554332 111 112223334577777777777642 22221
Q ss_pred -----HHHHHHhcCChHHHHHHHHHhC
Q 002490 760 -----AYITASVHGLQDVAERLAAELG 781 (916)
Q Consensus 760 -----A~~~a~~~g~~~~a~~l~~~~~ 781 (916)
.+..+...|+.++|.++.++..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 2334445577777777766544
No 445
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.80 E-value=0.11 Score=54.72 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=71.3
Q ss_pred hhhhhcCCHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcC--------ccchhhHHhhcCCHH
Q 002490 652 NLALESGNIQIAVASAKE-------IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMD 716 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~-------~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~--------~~~l~~l~~~~g~~~ 716 (916)
.++...++++.+.+..+. -+++..|..+|..+.+.|+.+.|+.+|+++=. ...+..+++..|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 567788899888887665 34678999999999999999999999987321 223455666788888
Q ss_pred HHHHHHHHHHHc----CCc-hhHHHHHHhcCCHHHHHHHHHHcC
Q 002490 717 KLSKMLKIAEVK----NDV-MGQFHNALYLGDVKERVKILESAG 755 (916)
Q Consensus 717 ~l~k~~~~~~~~----~~~-~~~~~~~~~~g~~~ea~~~~~~~g 755 (916)
+++.+.+..... ... ..-+..++.+|+.++|..+|.+.-
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 866666544333 222 223445566999999999998854
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.64 E-value=11 Score=44.85 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCeeEEEEcCCCCEEEEEECCCcEEEEECCC----------Ccc-eeeeee--------ecCCCCeEEEEEccC---CCE
Q 002490 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----------TKA-WEVDTL--------RGHMNNVSCVMFHAK---QDI 262 (916)
Q Consensus 205 ~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~----------~~~-~~~~~~--------~~~~~~v~~l~~sp~---~~~ 262 (916)
..|..+.++|+|.+++..|..| |.|..+.. ++. ....+. ..+...|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999988765 44443321 111 011111 133457889999996 589
Q ss_pred EEEEeCCCcEEEEECCCC
Q 002490 263 IVSNSEDKSIRVWDVTKR 280 (916)
Q Consensus 263 l~s~~~dg~i~vwd~~~~ 280 (916)
|++-+.|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 447
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.48 E-value=1.1 Score=49.82 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=104.5
Q ss_pred HHHhcccHHHHHhhhccCcccc-hhHHHH-----H-HHCCCchhhccccc-----Ccch-------hhhhhhhcCCHHHH
Q 002490 603 LSLLRKRYDHVMSMIRNSQLCG-QAMIAY-----L-QQKGFPEVALHFVK-----DERT-------RFNLALESGNIQIA 663 (916)
Q Consensus 603 ~al~~~~~~~~~~~~~~~~~~~-~~i~~~-----l-~~~~~~e~al~~~~-----~~~~-------~f~lal~~g~~~~A 663 (916)
.++..||++.|.+.+....... .....| . ...|.++.|.+... +|+. ..++++..|+++.|
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5667899999998876443211 112222 2 66777777666542 2221 35688999999999
Q ss_pred HHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccch-----h----hHH-------hhcCCHHHHHHHH
Q 002490 664 VASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERL-----S----FLY-------LITGNMDKLSKML 722 (916)
Q Consensus 664 ~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l-----~----~l~-------~~~g~~~~l~k~~ 722 (916)
...++.. +++.....+++.++.+|+++.|...+.++.....+ . ..| ....+.+.+.++.
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9988753 56888999999999999999999777665533221 1 011 1112233343332
Q ss_pred HHH--HHcCCch---hHHHHHHhcCCHHHHHHHHHHcC----CchHHHHHHH-hcCChHHHHHHHHHhC
Q 002490 723 KIA--EVKNDVM---GQFHNALYLGDVKERVKILESAG----HLPLAYITAS-VHGLQDVAERLAAELG 781 (916)
Q Consensus 723 ~~~--~~~~~~~---~~~~~~~~~g~~~ea~~~~~~~g----~~~~A~~~a~-~~g~~~~a~~l~~~~~ 781 (916)
+.. ..+++.. ..+..++..|+.++|.+++.+.= ...++...++ ..+..+++.+.++++-
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 211 1222222 22334455888888888876632 2222222222 2366677777776655
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.45 E-value=0.011 Score=62.74 Aligned_cols=244 Identities=11% Similarity=0.117 Sum_probs=143.3
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCCEEE-EEECCCeEEEEECCCCeeEEEE
Q 002490 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCLFTL 89 (916)
Q Consensus 11 ~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~l~-s~~~dg~I~vWd~~~~~~~~~l 89 (916)
......|-|.+.-+++++.+..+..|| +-++...... -.+....++|..+++.++ .+-..+.+.+|++.+......-
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 344567888887799999999999999 5555555443 345566788988887554 4456789999999754322211
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEEECCCe----------E
Q 002490 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT----------V 159 (916)
Q Consensus 90 ~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg~----------v 159 (916)
.+....-.-+.|++.++.++.+...|.+.|++..+.+.+.....|...+++++|.+.+ +.+.++.|.. +
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta 192 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETA 192 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhcccee
Confidence 1222222337899999999999999999999988877766666699999999999875 4555554543 3
Q ss_pred EEEECCCCcceec---------cCCccc-eeecccccc----ccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECC
Q 002490 160 RVWDIGALRKKTV---------SPADDI-LRLSQMNTD----LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (916)
Q Consensus 160 ~vwd~~~~~~~~~---------~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 225 (916)
+++...+.-.... ...... ..+...... -....+..+...++...+.+.|..|--||+ |..+.+-
T Consensus 193 ~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~-i~igf~a 271 (615)
T KOG2247|consen 193 SLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY-ILIGFDA 271 (615)
T ss_pred eeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc-ccccccc
Confidence 3343322110000 000000 000000000 001112223334555566778888888875 4555556
Q ss_pred CcEEEEECCCCcce-eeeeeecCCCCeEEEEEcc
Q 002490 226 RQVKLWRMNETKAW-EVDTLRGHMNNVSCVMFHA 258 (916)
Q Consensus 226 g~v~iwd~~~~~~~-~~~~~~~~~~~v~~l~~sp 258 (916)
|.|..-++.+.+.. ++.....|.+.+.+++.|.
T Consensus 272 g~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq 305 (615)
T KOG2247|consen 272 GYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ 305 (615)
T ss_pred eeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence 66666666665531 1112224555665555544
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.71 Score=49.10 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=89.2
Q ss_pred eEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeCCcEEEEEcCCCEEEEEccCCceEEE
Q 002490 369 RTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKK 448 (916)
Q Consensus 369 ~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~ 448 (916)
+.+-|....+.++.+.. |.+.=|...+..............|+|.++.||+|++.+|.-..+.+|.+.+..+...+.
T Consensus 26 ngvFfDDaNkqlfavrS---ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS---GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEec---CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555554444443333 445555554443322222344567799999999999999999999999999996432222
Q ss_pred -----eeCCC-ceeEEEEeCCceEEEEECCEEEEEEcCCCe-EEEEEE--cCCeeEEEEcCCCCEEEEEe
Q 002490 449 -----SILPI-AADAIFYAGTGNLLCRAEDRVVIFDLQQRL-VLGDLQ--TPFVKYVVWSNDMESVALLS 509 (916)
Q Consensus 449 -----i~~~~-~v~~l~~s~~g~~l~~~d~~v~l~d~~~~~-~~~~~~--~~~v~~v~~s~d~~~la~~~ 509 (916)
.+... .|...+|+.+..+.+..+..+.+|-+..-+ .++.++ ..+|+-..|.++-+.+..++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 12222 688899998866666688889898764332 233332 25688889999887766555
No 450
>PHA03098 kelch-like protein; Provisional
Probab=94.36 E-value=1.5 Score=51.05 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=51.9
Q ss_pred cCCCEEEEEECCC------eEEEEECCCCeeEEEE--ecCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeE
Q 002490 61 KSQPLFVSGGDDY------KIKVWNYKMHRCLFTL--LGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRTC 127 (916)
Q Consensus 61 p~~~~l~s~~~dg------~I~vWd~~~~~~~~~l--~~h~~~v~~v~fs~~~~~l~s~s~d-----g~I~iwd~~~~~~ 127 (916)
.++.+++.||.++ .+..||..+.+....- .........+ .-++...+.|+.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4566777776542 5677887766553211 1111111222 2356666666654 3577888776543
Q ss_pred EE--EEeCCCCceEEEEEecCCCEEEEEECC------CeEEEEECCCCc
Q 002490 128 IS--VLTGHNHYVMCASFHPKEDLVVSASLD------QTVRVWDIGALR 168 (916)
Q Consensus 128 ~~--~~~~h~~~v~~l~~~p~~~~l~s~s~d------g~v~vwd~~~~~ 168 (916)
.. .+.. ...-.+++. -++...+.|+.+ ..+..||+.+.+
T Consensus 371 ~~~~~lp~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 371 REEPPLIF-PRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeCCCcCc-CCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 22 1111 111112222 255666666632 357788876644
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=15 Score=44.00 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCCC
Q 002490 742 GDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 784 (916)
Q Consensus 742 g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~ 784 (916)
=++++....|.+.+++.+-+.++++.|+.++|++++.++..+.
T Consensus 492 c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 492 CDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 3689999999999999999999999999999999998877533
No 452
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.43 Score=47.05 Aligned_cols=118 Identities=19% Similarity=0.286 Sum_probs=81.2
Q ss_pred hHHHHHHHHhcccHHHHHhhhcc-------CcccchhHHHHHHHCCCchhhcccc-----cCcch------hhhhhhhcC
Q 002490 597 TEYIFKLSLLRKRYDHVMSMIRN-------SQLCGQAMIAYLQQKGFPEVALHFV-----KDERT------RFNLALESG 658 (916)
Q Consensus 597 ~~~~f~~al~~~~~~~~~~~~~~-------~~~~~~~i~~~l~~~~~~e~al~~~-----~~~~~------~f~lal~~g 658 (916)
-|.-|..||-.+..+.|...++. +..++.--.-.|+.+|..+.|++.. .||.. +..+....|
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 35567788888999888777653 2223332333689999999998865 34433 334556677
Q ss_pred CHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCChhHHHHHHHhhc--------CccchhhHHhhcCC
Q 002490 659 NIQIAVASAK-----EIDEKDHWYRLGVEALRQGNAGIVEYAYQRTK--------NFERLSFLYLITGN 714 (916)
Q Consensus 659 ~~~~A~~~a~-----~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~--------~~~~l~~l~~~~g~ 714 (916)
.--+|++..- ...|.+.|..||+.++..|++..|..||..+= -|.+++.++...|-
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 6656666553 46889999999999999999999999997632 24455555554443
No 453
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.21 E-value=4.7 Score=50.54 Aligned_cols=411 Identities=11% Similarity=0.088 Sum_probs=187.4
Q ss_pred cccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE
Q 002490 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (916)
Q Consensus 50 h~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~ 129 (916)
|-..++.|.-++++..+=. .|+.++.||....+....-......+..+.-..||+..+ =+.+ + +-|+.++....
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~-~--l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDD-T--LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCC-c--eeecCCCCcch
Confidence 4455666666666655543 355677777654432210001112333333333443222 1111 1 22333322111
Q ss_pred EEeCCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCee
Q 002490 130 VLTGHNHYVMCASFHPKEDL-VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (916)
Q Consensus 130 ~~~~h~~~v~~l~~~p~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (916)
. .-..+.+...++++.. +.++....++.+|++....-.... .......+.+-.....
T Consensus 435 ~---~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p-------------------~~~~~L~L~dG~a~A~ 492 (1774)
T PF11725_consen 435 A---EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTP-------------------RKTKTLQLADGKAQAQ 492 (1774)
T ss_pred h---hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCc-------------------cceeeeeccCCchhhh
Confidence 1 1134666777888886 666666677799998764221110 0011223333333667
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcce--eeeeeecCCCCeEEEEEccCCCEEEEE---eCCCcEEEEECCCCcee
Q 002490 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSN---SEDKSIRVWDVTKRTGV 283 (916)
Q Consensus 209 ~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~---~~dg~i~vwd~~~~~~~ 283 (916)
++.++++ .|+++..+|.++.=++...+.- .+...+.+......-.| -+...++| +.+|.+.
T Consensus 493 ~VgLs~d--rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~--G~~~~VtGF~~gd~G~lh---------- 558 (1774)
T PF11725_consen 493 SVGLSND--RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSAL--GGDHKVTGFISGDDGQLH---------- 558 (1774)
T ss_pred heeecCC--eEEEEeCCCCEEecccccccCCCcceEeccccccccccccc--cccceeeccccCCCCeee----------
Confidence 7888776 5778888998888776543321 11111111100011111 11222222 2233322
Q ss_pred EEeeccCCcEEEEEEecCCCeEE----------EEeCCCceEEEecCCcceEEecCCEEEEEeCCeEEEEEccCCce--e
Q 002490 284 QTFRREHDRFWILASHPEMNLLA----------AGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD--T 351 (916)
Q Consensus 284 ~~~~~~~~~i~~l~~sp~~~~la----------~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~~~d~~~~~~--~ 351 (916)
..++...+.+.+.++..++..+- .....|+-.-........+..+..-.+...+|.|+.||-.+..- .
T Consensus 559 Alikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~W~~~ 638 (1774)
T PF11725_consen 559 ALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQCWKDA 638 (1774)
T ss_pred EEEeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcchhhhhc
Confidence 22333333344444443333332 22222222111111111223333333334789999999655211 0
Q ss_pred ee---EEecCC-CCCC---CCcCCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCC-CCCCCccccccc-cCceeEEEEEe
Q 002490 352 QV---IPIRRP-GSTS---LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD-SIGRGDSVQDAK-KGLGGSAIFIA 422 (916)
Q Consensus 352 ~~---~~~~~~-~~~~---~~~~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~-~~~i~~~~fs~ 422 (916)
.+ -.+++. .... -.+.+..+..+|....+... ++..+.+-..... ..+. .+.+- ...|+.++...
T Consensus 639 ~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g---~~~~~a~~~~r~~~e~G~---~l~Gl~~~~i~a~Avv~ 712 (1774)
T PF11725_consen 639 GVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHG---DNNVFALPQRRNKVELGD---ALEGLEDRVITAFAVVN 712 (1774)
T ss_pred cCcCHHHHhccccCCceEecCCceeeeecccCCCccccC---CCcccccccccCCCCCCc---cccCCCcCcceeEEEEc
Confidence 00 001110 0000 01255566666654443221 1122221111110 1111 12222 34578899999
Q ss_pred CCcEEEEEcCCCEEEEEccCCceEEEeeCC---CceeEEEEeCCceEEEE-ECCEEEEEEcCCCe---E----------E
Q 002490 423 RNRFAVLDKSSNQVLVKNLKNEVVKKSILP---IAADAIFYAGTGNLLCR-AEDRVVIFDLQQRL---V----------L 485 (916)
Q Consensus 423 ~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~---~~v~~l~~s~~g~~l~~-~d~~v~l~d~~~~~---~----------~ 485 (916)
+++|++... .|.+..+.-.+. ...+..+ ..|..|++.....+.+. .+|.++--+-+.++ . +
T Consensus 713 ~~~fvald~-qg~lt~h~k~g~-p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v 790 (1774)
T PF11725_consen 713 DNKFVALDD-QGDLTAHQKPGR-PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKV 790 (1774)
T ss_pred CCceEEecc-CCccccccCCCC-CccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceec
Confidence 989988877 788999883333 3344444 38999999998777776 78877665422111 1 1
Q ss_pred EEEEcCCeeEEEEcCCCCEEEEEeC
Q 002490 486 GDLQTPFVKYVVWSNDMESVALLSK 510 (916)
Q Consensus 486 ~~~~~~~v~~v~~s~d~~~la~~~~ 510 (916)
......++.++..+.|....+...+
T Consensus 791 ~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 791 ALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cCCCCCchhhhhcCCCCceEEEecC
Confidence 1111255666666666665555544
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.20 E-value=11 Score=41.58 Aligned_cols=144 Identities=16% Similarity=0.145 Sum_probs=87.6
Q ss_pred CCCEEEEEecCCeEEEEECCCCc-----eEEEecccccCEEEEEEec-----CCCEEEEEECCCeEEEEECCC--Ce---
Q 002490 20 KRPWILASLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVHFHK-----SQPLFVSGGDDYKIKVWNYKM--HR--- 84 (916)
Q Consensus 20 ~~~~la~~~~dg~I~lwd~~~~~-----~~~~~~~h~~~V~~i~fsp-----~~~~l~s~~~dg~I~vWd~~~--~~--- 84 (916)
+...+++|+.+|.++||+...+. ++-+. .-..||..+..-+ +...||. =.-..+.||.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985443 11111 2457888777632 2223444 4456788888731 11
Q ss_pred ----eEEEEecCCC--CEEEEEEcC----C-CCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEEEE
Q 002490 85 ----CLFTLLGHLD--YIRTVQFHH----E-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (916)
Q Consensus 85 ----~~~~l~~h~~--~v~~v~fs~----~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~ 153 (916)
.+..+..|.- ....++.-| . ..+|..-+.||++.+++-+.-.....+.+ .--.-.+.|.|..+.++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1122222322 122222222 2 34788899999999999655443444433 2223347888888999999
Q ss_pred ECCCeEEEEECCC
Q 002490 154 SLDQTVRVWDIGA 166 (916)
Q Consensus 154 s~dg~v~vwd~~~ 166 (916)
+.+..+..|....
T Consensus 193 sss~~l~~Yky~~ 205 (418)
T PF14727_consen 193 SSSWTLECYKYQD 205 (418)
T ss_pred cCceeEEEecHHH
Confidence 9999999888644
No 455
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.18 E-value=0.66 Score=57.97 Aligned_cols=101 Identities=23% Similarity=0.236 Sum_probs=54.1
Q ss_pred hhhhcCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcC--------ccchhhHHhhcCCHHHHH
Q 002490 653 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLS 719 (916)
Q Consensus 653 lal~~g~~~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~--------~~~l~~l~~~~g~~~~l~ 719 (916)
.....|+++.|.+.++.. +++..|..+|......|+++.|..+|.++-. +..+..+|...|+.+++.
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 345667777777766543 3456677777777777777777777765321 223444555666666655
Q ss_pred HHHHHHHHcCCc-----hhHHHHHHhcCCHHHHHHHHHH
Q 002490 720 KMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILES 753 (916)
Q Consensus 720 k~~~~~~~~~~~-----~~~~~~~~~~g~~~ea~~~~~~ 753 (916)
+..+.+...... ......+...|++++|.+++..
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 554433222211 1112223335555555555544
No 456
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.11 E-value=1.7 Score=47.68 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=80.1
Q ss_pred CCEEEEEEeCCCCEEEEEe-----------cCC-eEEEEECCC--Cc--eEEEecccccCEEEEEEecCCCEEEEEECCC
Q 002490 10 NRVKGLSFHSKRPWILASL-----------HSG-VIQLWDYRM--GT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~-----------~dg-~I~lwd~~~--~~--~~~~~~~h~~~V~~i~fsp~~~~l~s~~~dg 73 (916)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+-..-...+++++.+++ ++++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-
Confidence 4567899999999776642 223 777776443 33 233443334456889999998 5554 333
Q ss_pred eEEEE-ECCC-------CeeEEE-Eec----CCCCEEEEEEcCCCCEEEEEECC-------------------CcEEEEe
Q 002490 74 KIKVW-NYKM-------HRCLFT-LLG----HLDYIRTVQFHHEYPWIVSASDD-------------------QTIRIWN 121 (916)
Q Consensus 74 ~I~vW-d~~~-------~~~~~~-l~~----h~~~v~~v~fs~~~~~l~s~s~d-------------------g~I~iwd 121 (916)
.|..+ +... .+.+.+ +.. +......+.|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 34433 4431 112221 222 13447789999999865554421 3455555
Q ss_pred CCCCeEEEEEeCCCCceEEEEEecCCCEEEEEE
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~s~s 154 (916)
..+++....-.++ .....++|+|+|+++++-.
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 5544433222333 3456788998887766533
No 457
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.08 E-value=0.035 Score=58.45 Aligned_cols=100 Identities=25% Similarity=0.369 Sum_probs=8.9
Q ss_pred hhhhcCCHHHHHHHHH----H---cCCHHHHHHHHHHHHHcCChhHHHHHHHh--------hcCccchhhHHhhcCCHHH
Q 002490 653 LALESGNIQIAVASAK----E---IDEKDHWYRLGVEALRQGNAGIVEYAYQR--------TKNFERLSFLYLITGNMDK 717 (916)
Q Consensus 653 lal~~g~~~~A~~~a~----~---~~~~~~w~~la~~al~~g~~~~A~~~y~~--------~~~~~~l~~l~~~~g~~~~ 717 (916)
+....|+++.|++..+ . .+++..|..+|..|...++++.|+.+|.+ ..++..+..+ +..+++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 3344555555555542 1 23456666666666666666666666654 2344444444 45566666
Q ss_pred HHHHHHHHHHcCC----chhHHHHHHhcCCHHHHHHHHHH
Q 002490 718 LSKMLKIAEVKND----VMGQFHNALYLGDVKERVKILES 753 (916)
Q Consensus 718 l~k~~~~~~~~~~----~~~~~~~~~~~g~~~ea~~~~~~ 753 (916)
+.++++.+-.+.. .......+...|+++++.+++.+
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 5555543321111 11222333446666666666555
No 458
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.06 E-value=0.64 Score=56.60 Aligned_cols=150 Identities=21% Similarity=0.091 Sum_probs=77.7
Q ss_pred HHhcccHHHHHhhhccCcccch--------hHHHHHHHCCCchhhccccc-----Ccch----------hhhhhhhcCCH
Q 002490 604 SLLRKRYDHVMSMIRNSQLCGQ--------AMIAYLQQKGFPEVALHFVK-----DERT----------RFNLALESGNI 660 (916)
Q Consensus 604 al~~~~~~~~~~~~~~~~~~~~--------~i~~~l~~~~~~e~al~~~~-----~~~~----------~f~lal~~g~~ 660 (916)
.+..+++++|+..++.....+. .+...+...|.++.|+..++ +|.. .+...++.|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3556777777765543221111 12334445566666655432 1111 12233566777
Q ss_pred HHHHHHHHHcCC--H------------------HHHHHHHHHHHHcCChhHHHHHHHhhcC--------ccchhhHHhhc
Q 002490 661 QIAVASAKEIDE--K------------------DHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLIT 712 (916)
Q Consensus 661 ~~A~~~a~~~~~--~------------------~~w~~la~~al~~g~~~~A~~~y~~~~~--------~~~l~~l~~~~ 712 (916)
+.|.+.+..+.. | .....+|.....+|+++.|+.+|.++-. .-.+..++...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777766554321 1 2345567777777777777777765221 22334455566
Q ss_pred CCHHHHHHHHHHHHHcCCch-----hHHHHHHhcCCHHHHHHHHHH
Q 002490 713 GNMDKLSKMLKIAEVKNDVM-----GQFHNALYLGDVKERVKILES 753 (916)
Q Consensus 713 g~~~~l~k~~~~~~~~~~~~-----~~~~~~~~~g~~~ea~~~~~~ 753 (916)
|+++++.++.+.+....-.. ..+.+++.+|++++|.+++.+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666666655544332222 333445556666666666544
No 459
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.04 E-value=0.84 Score=57.01 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=92.9
Q ss_pred HhcccHHHHHhhhccC-------cccchhHHHHHHHCCCchhhcccccC-----cc---h---hhhhhhhcCCHHHHHHH
Q 002490 605 LLRKRYDHVMSMIRNS-------QLCGQAMIAYLQQKGFPEVALHFVKD-----ER---T---RFNLALESGNIQIAVAS 666 (916)
Q Consensus 605 l~~~~~~~~~~~~~~~-------~~~~~~i~~~l~~~~~~e~al~~~~~-----~~---~---~f~lal~~g~~~~A~~~ 666 (916)
...++++++...+... ......+..++...|.++.|+...+. |. . ........|+++.|.+.
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456777776654322 01112344556667777777666532 11 1 12345677888888888
Q ss_pred HHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCc--------cchhhHHhhcCCHHHHHHHHHHHHHcCCch-
Q 002490 667 AKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKNDVM- 732 (916)
Q Consensus 667 a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~--------~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~- 732 (916)
.+.. +++..|..+|......|+++.|..+|.++-.. ..+..++...|+.+.+.++.+.........
T Consensus 624 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 703 (899)
T TIGR02917 624 FKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh
Confidence 7643 45677888999888999999999988774322 245566777888888777766554333211
Q ss_pred ----hHHHHHHhcCCHHHHHHHHHHc
Q 002490 733 ----GQFHNALYLGDVKERVKILESA 754 (916)
Q Consensus 733 ----~~~~~~~~~g~~~ea~~~~~~~ 754 (916)
....++...|++++|++.|.++
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1223445578888888777763
No 460
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.85 E-value=2.5 Score=48.64 Aligned_cols=124 Identities=10% Similarity=0.138 Sum_probs=75.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEEe-CCCCceEEEEEe--cCCCEEEEEECCCeEEEEECCCCc
Q 002490 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFH--PKEDLVVSASLDQTVRVWDIGALR 168 (916)
Q Consensus 92 h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~~--p~~~~l~s~s~dg~v~vwd~~~~~ 168 (916)
.......+.-+.-++..++-+...++.|||...+.....-. ...+.|..+.|. |+++.+++.+-...|.++.-....
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 33445555555555544444445689999998887554332 356789999985 577888888888899988643211
Q ss_pred ceeccCCccceeeccccccccccccceEEEEEeccC-CCeeEEEEcCCCCEEEEEECCCcEEEEEC
Q 002490 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (916)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~v~iwd~ 233 (916)
-....|. + ....+..+..|+ .+|....|.++|.+++. + ++++.|+|-
T Consensus 108 y~~~~p~-------------w---~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-s-GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPS-------------W---APIRKIDISSHTPHPIGDSIWLKDGTLVVG-S-GNQLFVFDK 155 (631)
T ss_pred hhcCCcc-------------c---ceeEEEEeecCCCCCccceeEecCCeEEEE-e-CCEEEEECC
Confidence 1110110 0 011122334444 67889999999965544 3 467888864
No 461
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.84 E-value=19 Score=43.21 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=74.3
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEeccccc--------CEEEEEEec----------------CCCEEEEEECCCeEE
Q 002490 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG--------PVRGVHFHK----------------SQPLFVSGGDDYKIK 76 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~~~~~~~~~~h~~--------~V~~i~fsp----------------~~~~l~s~~~dg~I~ 76 (916)
+..|.+++.++.|.-.|..+|+.+-+++.... ..+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677778889999999999999988764321 123444432 234788888999999
Q ss_pred EEECCCCeeEEEEecCCCCEE-------------EEEEcC--CCCEEEEEEC----------CCcEEEEeCCCCeEEEEE
Q 002490 77 VWNYKMHRCLFTLLGHLDYIR-------------TVQFHH--EYPWIVSASD----------DQTIRIWNWQSRTCISVL 131 (916)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~v~-------------~v~fs~--~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~ 131 (916)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876632 22111 011111 1234555542 688999999999998876
Q ss_pred e
Q 002490 132 T 132 (916)
Q Consensus 132 ~ 132 (916)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.77 E-value=2.9 Score=37.21 Aligned_cols=116 Identities=10% Similarity=0.153 Sum_probs=76.8
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCC--------ceEEEecccccCEEEEEEec-----CCCEEEEEECCCeEEEEE
Q 002490 13 KGLSFHSKRPWILASLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVHFHK-----SQPLFVSGGDDYKIKVWN 79 (916)
Q Consensus 13 ~~l~~sp~~~~la~~~~dg~I~lwd~~~~--------~~~~~~~~h~~~V~~i~fsp-----~~~~l~s~~~dg~I~vWd 79 (916)
..-.|....+.|++++..|.|.|++.... ..++.+. -...|++++-.+ +...|+.|+. ..+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 44567788889999999999999987533 2334443 455677776544 3446776665 5899999
Q ss_pred CCCCeeEEEEecCCCCEEEEEEcC----CCCEEEEEECCCcEEEEeCCCCeEEEEEe
Q 002490 80 YKMHRCLFTLLGHLDYIRTVQFHH----EYPWIVSASDDQTIRIWNWQSRTCISVLT 132 (916)
Q Consensus 80 ~~~~~~~~~l~~h~~~v~~v~fs~----~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 132 (916)
+.....++.-. -.+.|.++.+-. +.++ +..+.+..|.-+|.+..+...+..
T Consensus 80 V~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l-~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 80 VENNSDLFYKE-VPDGVNAIVIGKLGDIPSPL-VIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cccCchhhhhh-CccceeEEEEEecCCCCCcE-EEECceEEEEEeCCCCcEEEEEec
Confidence 99877766443 346777777642 2344 444446788888876655555443
No 463
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.75 E-value=2.2 Score=49.13 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=74.0
Q ss_pred CEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEEEEe-cCCCCEEEEEEc--CCCCEEEEEECCCcEEEEeCC------
Q 002490 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFH--HEYPWIVSASDDQTIRIWNWQ------ 123 (916)
Q Consensus 53 ~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~~l~-~h~~~v~~v~fs--~~~~~l~s~s~dg~I~iwd~~------ 123 (916)
..+-+.-|.-++..++-++..++.|||...+.....-. ...+.|..+.|. |+++.+++.+....|.++.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444445555555555556789999999877544332 457889999986 688888888889999998531
Q ss_pred ---CCeEEEEE--eCCC-CceEEEEEecCCCEEEEEECCCeEEEEEC
Q 002490 124 ---SRTCISVL--TGHN-HYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (916)
Q Consensus 124 ---~~~~~~~~--~~h~-~~v~~l~~~p~~~~l~s~s~dg~v~vwd~ 164 (916)
+...+..+ ..|. ++|.+..|.++|.+++.++ ..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 12233322 3344 6899999999986555443 56788764
No 464
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.67 E-value=1.1 Score=47.56 Aligned_cols=116 Identities=21% Similarity=0.170 Sum_probs=77.7
Q ss_pred hhhhhcCCHHHHHHHHHH--cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcC---ccchhhHHhhcCCHHHHHHHHHHHH
Q 002490 652 NLALESGNIQIAVASAKE--IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKN---FERLSFLYLITGNMDKLSKMLKIAE 726 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~--~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~---~~~l~~l~~~~g~~~~l~k~~~~~~ 726 (916)
...+..|+...|.++.++ ++++..|-.--+.....++|+.-+.....-+- |+-....++..|+...+.+.
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~y----- 259 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKY----- 259 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHH-----
Confidence 456788889999888885 46777777767767777888776663321111 11111122233333333322
Q ss_pred HcCCchhHHHHHHhcCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCCC
Q 002490 727 VKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 784 (916)
Q Consensus 727 ~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~ 784 (916)
--...+ ++++++|.++|.|.+|.+.|...++.+...+|.++...+.
T Consensus 260 -----------I~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~ 305 (319)
T PF04840_consen 260 -----------IPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNN 305 (319)
T ss_pred -----------HHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCC
Confidence 112555 9999999999999999999999999998888888766543
No 465
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.54 E-value=0.06 Score=61.52 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=72.1
Q ss_pred cccccCEEEEEEec-CCCEEEEEECCCeEEEEECC--CCeeEEEE-----ecCCCCEEEEEEcC---CCCEEEEEECCCc
Q 002490 48 DEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYK--MHRCLFTL-----LGHLDYIRTVQFHH---EYPWIVSASDDQT 116 (916)
Q Consensus 48 ~~h~~~V~~i~fsp-~~~~l~s~~~dg~I~vWd~~--~~~~~~~l-----~~h~~~v~~v~fs~---~~~~l~s~s~dg~ 116 (916)
++..+.|-.+.|-. +.+.+. -.-|...||++. .|+....+ .....++.-+.|.| +..++..+-.+++
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 45567777777732 222222 223678899886 34433222 23344556666665 5567777888889
Q ss_pred EEEEeCCCCeEEEEEeCCCCceEEEE-----------EecCCCEEEEEECCCeEEEEECC
Q 002490 117 IRIWNWQSRTCISVLTGHNHYVMCAS-----------FHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 117 I~iwd~~~~~~~~~~~~h~~~v~~l~-----------~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
|++.++..... ..+.+|...++.++ .+|||..++.++.||.+++|.+.
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 99887754322 33445666555443 57889999999999998888763
No 466
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=0.73 Score=54.66 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=90.2
Q ss_pred CEEEEEEcCCCCEEEE--EECCCcEEEEeCCCCeEE-----E------EEeCCCCceEEEEEecCCC-EEEEEECCCeEE
Q 002490 95 YIRTVQFHHEYPWIVS--ASDDQTIRIWNWQSRTCI-----S------VLTGHNHYVMCASFHPKED-LVVSASLDQTVR 160 (916)
Q Consensus 95 ~v~~v~fs~~~~~l~s--~s~dg~I~iwd~~~~~~~-----~------~~~~h~~~v~~l~~~p~~~-~l~s~s~dg~v~ 160 (916)
+|..+..++|+...++ .+.+-.|..+|+++-... . +.........++.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555556667664443 333447888998642211 1 1112234567888988643 456667788888
Q ss_pred EEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEcCCCCEEEEEECCCcEEEEECCCCccee
Q 002490 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 161 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
+..+......... .......++++|+|.|..+++|-..|++.-|.........
T Consensus 182 V~~~~~~~~~v~s---------------------------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS---------------------------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred hhhhhhhhhhhcc---------------------------cCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 8877553322110 1234567899999999999999999999998765542211
Q ss_pred eeeeecC-CCCeEEEEEccCCCEEEEE
Q 002490 241 VDTLRGH-MNNVSCVMFHAKQDIIVSN 266 (916)
Q Consensus 241 ~~~~~~~-~~~v~~l~~sp~~~~l~s~ 266 (916)
+...... ...|.|++|-....++++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 2211111 4679999998877777654
No 467
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.31 E-value=0.98 Score=55.75 Aligned_cols=149 Identities=11% Similarity=0.068 Sum_probs=98.8
Q ss_pred hcccHHHHHhhhccCcc---cc---hhHHHHHHHCCCchhhcccccC-----c---chhhhhhhhc---CCHHHHHHHHH
Q 002490 606 LRKRYDHVMSMIRNSQL---CG---QAMIAYLQQKGFPEVALHFVKD-----E---RTRFNLALES---GNIQIAVASAK 668 (916)
Q Consensus 606 ~~~~~~~~~~~~~~~~~---~~---~~i~~~l~~~~~~e~al~~~~~-----~---~~~f~lal~~---g~~~~A~~~a~ 668 (916)
..|++++|....+.... .. ......+.+.|.++.|..+.+. | ...+.++..+ |+++.|+..++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57888888776653211 11 1112234556777777766531 2 2234456666 99999998876
Q ss_pred Hc----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------chhhHHhhcCCHHHHHHHHHHHHHcCC-c----
Q 002490 669 EI----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLSKMLKIAEVKND-V---- 731 (916)
Q Consensus 669 ~~----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~--------~l~~l~~~~g~~~~l~k~~~~~~~~~~-~---- 731 (916)
+. .+...|..+|..+.+.|+++.|+.+|.++-..+ .+..++...|+.+++..+.+.+..... .
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 42 357899999999999999999999998743322 344567778899988777765543322 2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHc
Q 002490 732 MGQFHNALYLGDVKERVKILESA 754 (916)
Q Consensus 732 ~~~~~~~~~~g~~~ea~~~~~~~ 754 (916)
.....++..+|++++|+..|.++
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 12233455699999999999886
No 468
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.26 E-value=20 Score=41.53 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=46.4
Q ss_pred CCcEEEEEcCCCEEEEEccCC-ceEEEeeCCC-------ceeEEEEeCCceEEEEECCEEEEEEcCCCeEEEEEE
Q 002490 423 RNRFAVLDKSSNQVLVKNLKN-EVVKKSILPI-------AADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQ 489 (916)
Q Consensus 423 ~~~~l~~~~~d~~I~iwdl~~-~~~~~i~~~~-------~v~~l~~s~~g~~l~~~d~~v~l~d~~~~~~~~~~~ 489 (916)
+|++... .+++|.+|++.+ +..+++..+. .+.++..-...|+|++.+..|++.|+.-...+.++.
T Consensus 242 ~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 242 FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 5665555 378999999985 6677777763 233443333468889999999999987777776665
No 469
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.23 E-value=0.95 Score=45.05 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=55.1
Q ss_pred hhhhhcCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------chhhHHhhcCCHHHH
Q 002490 652 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKL 718 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~--------~l~~l~~~~g~~~~l 718 (916)
...+..||+..|...+++. ++.+.|.-+|-.+.+.|+++.|...|.++-++. .+...|+..|+.+.+
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence 3568899999999988753 567889999999999999999999998865443 234445555555555
Q ss_pred HHHHHHHHH
Q 002490 719 SKMLKIAEV 727 (916)
Q Consensus 719 ~k~~~~~~~ 727 (916)
+++..-+..
T Consensus 188 ~~lll~a~l 196 (257)
T COG5010 188 ETLLLPAYL 196 (257)
T ss_pred HHHHHHHHh
Confidence 555444433
No 470
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.06 E-value=4.3 Score=44.47 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=77.4
Q ss_pred CCEEEEEEcCCCCEEEEEE-----------CCC-cEEEEeCCC--Ce--EEEEEeCCCCceEEEEEecCCCEEEEEECCC
Q 002490 94 DYIRTVQFHHEYPWIVSAS-----------DDQ-TIRIWNWQS--RT--CISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (916)
Q Consensus 94 ~~v~~v~fs~~~~~l~s~s-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~v~~l~~~p~~~~l~s~s~dg 157 (916)
.....|+|.++|+++++-. ..+ .|.+++-.. |+ ....+.........+++.+++ ++ +++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCe
Confidence 4567788999988666542 123 677775432 32 223443334456889999888 44 444444
Q ss_pred eEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEec----cCCCeeEEEEcCCCCEEEEEECC--------
Q 002490 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG----HDRGVNWAAFHPTLPLIVSGADD-------- 225 (916)
Q Consensus 158 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~d-------- 225 (916)
..++.|......... . ...+...+.. +....+.++|.|+|.+.++-+..
T Consensus 92 i~~~~d~~gdg~ad~-~------------------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 92 ILFLRDKDGDDKADG-E------------------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred EEEEeCCCCCCCCCC-c------------------cEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 333445443211100 0 0001111111 23457789999999876654421
Q ss_pred -----------CcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEe
Q 002490 226 -----------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (916)
Q Consensus 226 -----------g~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~ 267 (916)
|.|.-++..+.+. ..+.........++|+|+|+++++-.
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~---e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKL---RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCccCcccccCceEEEEecCCCeE---EEEecCcCCCccceECCCCCEEEEcc
Confidence 3344444444432 22222234456788888888766543
No 471
>PHA02790 Kelch-like protein; Provisional
Probab=92.88 E-value=4.9 Score=45.90 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=51.5
Q ss_pred cCCCEEEEEECCC-----eEEEEECCCCeeEEE--EecCCCCEEEEEEcCCCCEEEEEECC--CcEEEEeCCCCeEEE--
Q 002490 61 KSQPLFVSGGDDY-----KIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCIS-- 129 (916)
Q Consensus 61 p~~~~l~s~~~dg-----~I~vWd~~~~~~~~~--l~~h~~~v~~v~fs~~~~~l~s~s~d--g~I~iwd~~~~~~~~-- 129 (916)
.++.++++||.++ .+..||..+++.... +.........+ .-++...+.|+.+ .++..||..+++-..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3455677777542 566788776654332 21111111122 2356666666643 357888876553322
Q ss_pred EEeCCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCc
Q 002490 130 VLTGHNHYVMCASFHPKEDLVVSASLDQ---TVRVWDIGALR 168 (916)
Q Consensus 130 ~~~~h~~~v~~l~~~p~~~~l~s~s~dg---~v~vwd~~~~~ 168 (916)
.+...... .+++. -+++..+.|+.++ ++..||..+.+
T Consensus 348 ~l~~~r~~-~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 348 SLLKPRCN-PAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCCcc-cEEEE-ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 22211111 12222 2566667777543 46677766543
No 472
>PRK12370 invasion protein regulator; Provisional
Probab=92.86 E-value=1.7 Score=50.62 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=82.8
Q ss_pred hhhhcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccc--------hhhHHhhcCCHHHHH
Q 002490 653 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER--------LSFLYLITGNMDKLS 719 (916)
Q Consensus 653 lal~~g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~--------l~~l~~~~g~~~~l~ 719 (916)
+....|+++.|...++. -+++..|..+|..+..+|+++.|..+|.++-..+- +..+++..|+.+++.
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence 44678999999988764 24577899999999999999999999988532211 123466688988887
Q ss_pred HHHHHHHHcC---Cch---hHHHHHHhcCCHHHHHHHHHHcCCch-H----HHHHHHh-cCChHHHHHHHHH
Q 002490 720 KMLKIAEVKN---DVM---GQFHNALYLGDVKERVKILESAGHLP-L----AYITASV-HGLQDVAERLAAE 779 (916)
Q Consensus 720 k~~~~~~~~~---~~~---~~~~~~~~~g~~~ea~~~~~~~g~~~-~----A~~~a~~-~g~~~~a~~l~~~ 779 (916)
+..+.+.... ... ....++..+|++++|...+.+.-..+ . ...++.. .++.++|...+++
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ 498 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIRE 498 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7765543322 121 22344456999999999998743211 1 2223222 3444666665554
No 473
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.82 E-value=1.3 Score=40.98 Aligned_cols=79 Identities=22% Similarity=0.166 Sum_probs=58.6
Q ss_pred hhhhcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHH
Q 002490 653 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 727 (916)
Q Consensus 653 lal~~g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~ 727 (916)
...+.|+++.|....+. -.+..-|-.||-.+-.+|++..|..||.++...+. .++..-
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--------ddp~~~--------- 106 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--------DAPQAP--------- 106 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCchHH---------
Confidence 45788999999988764 35688899999999999999999999988765543 111111
Q ss_pred cCCchhHHHHHHhcCCHHHHHHHHH
Q 002490 728 KNDVMGQFHNALYLGDVKERVKILE 752 (916)
Q Consensus 728 ~~~~~~~~~~~~~~g~~~ea~~~~~ 752 (916)
.-+..+++.+|+.++|.+-|.
T Consensus 107 ----~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 107 ----WAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred ----HHHHHHHHHcCCHHHHHHHHH
Confidence 112456777888888888764
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.73 E-value=7.1 Score=38.10 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=63.4
Q ss_pred CEEEEEECCCcEEEEECCCCcceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC------cEEEE-ECCC----CceeE-
Q 002490 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK------SIRVW-DVTK----RTGVQ- 284 (916)
Q Consensus 217 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg------~i~vw-d~~~----~~~~~- 284 (916)
..|+.+...+.|.+|++.........++.. -+.|..+.++..|++|++--++. .+|+| +.+. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 345444667889999998555444555554 37899999999999999874332 45665 1111 11111
Q ss_pred Eeec---------------------cCCcEEEEEEecCCCeEEEEeCCCceEEEecC
Q 002490 285 TFRR---------------------EHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (916)
Q Consensus 285 ~~~~---------------------~~~~i~~l~~sp~~~~la~g~~~~~~v~~~~~ 320 (916)
.+-+ ...++.+++..|-..-|++|+++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 0000 12345677777766667777777887776644
No 475
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.57 E-value=21 Score=39.93 Aligned_cols=266 Identities=12% Similarity=0.043 Sum_probs=127.4
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEeccc-ccCEEEEEEecCCCEEEEEECCCeEEEEECCCCeeEE
Q 002490 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEH-DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (916)
Q Consensus 9 ~~~V~~l~~sp~~~~la~~~~dg~I~lwd~~~~~~~~~~~~h-~~~V~~i~fsp~~~~l~s~~~dg~I~vWd~~~~~~~~ 87 (916)
..+|..+.+...|. +-+|+.+| +..||..+++.++.-... +.+|..+.-+-.|+ |..|+++| |.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence 45788888888774 66777777 777888888877655433 36677666666664 66777665 5666655422211
Q ss_pred EEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-EeCCC--CceEEEEEecCCCEEEEEECCCeEEEEE
Q 002490 88 TLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHN--HYVMCASFHPKEDLVVSASLDQTVRVWD 163 (916)
Q Consensus 88 ~l~-~h~~~v~~v~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~h~--~~v~~l~~~p~~~~l~s~s~dg~v~vwd 163 (916)
-.. -....|..+.=..+| .+-.|+..|..+ .....+..... .+.|. +.|.++....+| -+.+++.+|.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEEEec
Confidence 111 112233333322333 355556555332 23332222222 22222 234455444444 567777777666544
Q ss_pred CCCCcceeccCCccceeeccccccccccccceEEEEEeccCCC-eeEEEEcC--CCCEEEEEECCCcEEEEECCCCccee
Q 002490 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG-VNWAAFHP--TLPLIVSGADDRQVKLWRMNETKAWE 240 (916)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p--~~~~l~~~~~dg~v~iwd~~~~~~~~ 240 (916)
-.-..... ....++. +...+..| ....+-...+.|.+.+-+-.++..+.
T Consensus 317 a~w~~ma~----------------------------in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~ 368 (671)
T COG3292 317 ADWKRMAV----------------------------INDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVR 368 (671)
T ss_pred chhhheee----------------------------eecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEE
Confidence 32111110 0000000 00011111 00111111111222222223333211
Q ss_pred -eeeeecCCCCeEEEEEccCCCEEEEEeCCCcEEEEECCC-CceeEEeec-cCCcEEEEEEecCCCeEEEEeCCCc
Q 002490 241 -VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGM 313 (916)
Q Consensus 241 -~~~~~~~~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~-~~~~i~~l~~sp~~~~la~g~~~~~ 313 (916)
+...+ ..+|+.+++..+ ..+-.++...-+..|+..+ +..+....+ ..+++..+.-.|+++ +-.|+.+|+
T Consensus 369 sv~q~R--g~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Gl 440 (671)
T COG3292 369 SVHQLR--GMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGL 440 (671)
T ss_pred Eeeecc--ccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCe
Confidence 22222 256777777764 4566666665566677665 333333222 345677777788887 666665555
No 476
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.55 E-value=0.69 Score=45.52 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccc--------hhh-HHhhcCC--HHHHHHHHHHHHHcCCchh-----
Q 002490 670 IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER--------LSF-LYLITGN--MDKLSKMLKIAEVKNDVMG----- 733 (916)
Q Consensus 670 ~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~--------l~~-l~~~~g~--~~~l~k~~~~~~~~~~~~~----- 733 (916)
-++.+.|..||..++..|+++.|..+|.++-..+- +.. +|...|+ .+++.++.+.+...+....
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 46789999999999999999999999988554332 222 3344555 3566555554433333221
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q 002490 734 QFHNALYLGDVKERVKILESA 754 (916)
Q Consensus 734 ~~~~~~~~g~~~ea~~~~~~~ 754 (916)
.+..+..+|++++|++.|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 223344577777777777664
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.51 E-value=5.5 Score=45.68 Aligned_cols=44 Identities=9% Similarity=-0.170 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHcCCchHHHHHHHhcCChHHHHHHHHHhCCCC
Q 002490 741 LGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 784 (916)
Q Consensus 741 ~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~ 784 (916)
.+...+|...|...|.+.+|...+++.++|.++..|+.+-.+++
T Consensus 935 n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e 978 (1243)
T COG5290 935 NLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE 978 (1243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH
Confidence 66777899999999999999999999999999998886655444
No 478
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.51 E-value=0.64 Score=38.28 Aligned_cols=75 Identities=23% Similarity=0.197 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHH----cC---CHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcC
Q 002490 657 SGNIQIAVASAKE----ID---EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKN 729 (916)
Q Consensus 657 ~g~~~~A~~~a~~----~~---~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~ 729 (916)
.|+++.|+..+.. .+ +...|-.+|....++|+++.|...+.+ ...+. - +.+ .
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~-----~~~-~----------- 60 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---S-----NPD-I----------- 60 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---C-----HHH-H-----------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---C-----CHH-H-----------
Confidence 4667777776543 22 456788899999999999999999977 11111 0 000 0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHH
Q 002490 730 DVMGQFHNALYLGDVKERVKILES 753 (916)
Q Consensus 730 ~~~~~~~~~~~~g~~~ea~~~~~~ 753 (916)
....+.+++.+|++++|++.|.+
T Consensus 61 -~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 -HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHhc
Confidence 11225788889999999999876
No 479
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.35 E-value=1.5 Score=42.78 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=101.0
Q ss_pred ccHHHHHhhhccCcccchhHHHHHHHCCCchhhccccc-----Ccch-----hhh-hhhhcCCHHHHHHHHHH-cCC---
Q 002490 608 KRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK-----DERT-----RFN-LALESGNIQIAVASAKE-IDE--- 672 (916)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~e~al~~~~-----~~~~-----~f~-lal~~g~~~~A~~~a~~-~~~--- 672 (916)
.++++|++.-++.......+..|.++.|..+.|.+..+ +|+. .|. ..-+.|.+++|...-.. +.+
T Consensus 56 ~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y 135 (250)
T COG3063 56 KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAY 135 (250)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCC
Confidence 45555666666665555667778899999888776543 2222 222 33466788888877653 232
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHHHHHHhcCCHHHHHH
Q 002490 673 ---KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVK 749 (916)
Q Consensus 673 ---~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~~~~~~~g~~~ea~~ 749 (916)
...|++++-.++++|..+.|++.|+++=..+ ..+...+.+|++.-..+++...+-.. +.++..+..
T Consensus 136 ~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~---~~~~~~~~~ 204 (250)
T COG3063 136 GEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--------PQFPPALLELARLHYKAGDYAPARLY---LERYQQRGG 204 (250)
T ss_pred CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--------cCCChHHHHHHHHHHhcccchHHHHH---HHHHHhccc
Confidence 4579999999999999999999998864443 34445666666555555555433111 111111111
Q ss_pred HHHHcCCchHHHHHHHhcCChHHHHHHHHHhC
Q 002490 750 ILESAGHLPLAYITASVHGLQDVAERLAAELG 781 (916)
Q Consensus 750 ~~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~ 781 (916)
..+..+-|++++||..|+-+.+.+.-.++.
T Consensus 205 --~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 205 --AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred --ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122345678999999999887777665543
No 480
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.26 E-value=0.39 Score=50.31 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=68.2
Q ss_pred hHHHHHHHHhcccHHHHHhhhccCccc-chh---HHHHHHHCCCchhhcc----cccCcch---------hhhhhhhcCC
Q 002490 597 TEYIFKLSLLRKRYDHVMSMIRNSQLC-GQA---MIAYLQQKGFPEVALH----FVKDERT---------RFNLALESGN 659 (916)
Q Consensus 597 ~~~~f~~al~~~~~~~~~~~~~~~~~~-~~~---i~~~l~~~~~~e~al~----~~~~~~~---------~f~lal~~g~ 659 (916)
..+.++..+..|.++.++..++..... -+. +..|+....-.+.++. .+.++.. ...+.+..|+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC
Confidence 346667778889999888877544332 233 3345544222233221 2222211 1234567899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccc
Q 002490 660 IQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER 704 (916)
Q Consensus 660 ~~~A~~~a~~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~ 704 (916)
++.|++.+...++.++-..+-+.+|+.++++.|++.+.++++++.
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999988888888888888889999999999999988876654
No 481
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.22 E-value=0.86 Score=45.50 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEecCCcceEEEeee
Q 002490 491 PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHET 529 (916)
Q Consensus 491 ~~v~~v~~s~d~~~la~~~~~~i~i~~~~~~~~~~~~~~ 529 (916)
..|..+..+.+|.-++..+++..+.|+.+++.-..+.+.
T Consensus 67 ~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 67 PNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCWIRVSDS 105 (219)
T ss_pred CcEEEEEEcCCCCEEEEEeCCCEEEeccccceeEEeccc
Confidence 567888899999999999988999999998876666553
No 482
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=1.6 Score=47.00 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHHcCChhHHHHHHHh---hcCccc
Q 002490 670 IDEKDHWYRLGVEALRQGNAGIVEYAYQR---TKNFER 704 (916)
Q Consensus 670 ~~~~~~w~~la~~al~~g~~~~A~~~y~~---~~~~~~ 704 (916)
-.++.+|..||+.+.+.++.+.|++||.+ .+|.++
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 46799999999999999999999999987 455543
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.96 E-value=2.7 Score=45.60 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=100.5
Q ss_pred ccCCCEEEEEEeC-CCCEEE-EEecCCeEEEEECCCCceEEEecccccCEEEEEEecCCC--------EEEEEECCCeEE
Q 002490 7 TKSNRVKGLSFHS-KRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--------LFVSGGDDYKIK 76 (916)
Q Consensus 7 ~h~~~V~~l~~sp-~~~~la-~~~~dg~I~lwd~~~~~~~~~~~~h~~~V~~i~fsp~~~--------~l~s~~~dg~I~ 76 (916)
|++-.+..+-.|. +..+|. .|+....++-.|++-|+.+...+.|+.. -+.|.|+.+ .|+ |-.+..|.
T Consensus 464 GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svF 540 (776)
T COG5167 464 GKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVF 540 (776)
T ss_pred CCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceE
Confidence 4444444444444 444443 3455567888899999999999988876 477887643 233 44455555
Q ss_pred EEECC-CCeeEEEEecCCCCEEEEEEcC----CCCEEEEEECCCcEEEEeCCCCeEEEEEeCCCCceEEEEEecCCCEEE
Q 002490 77 VWNYK-MHRCLFTLLGHLDYIRTVQFHH----EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151 (916)
Q Consensus 77 vWd~~-~~~~~~~l~~h~~~v~~v~fs~----~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 151 (916)
-.|.+ .|..+... ...++++.-.||. .+.+++.+|..|.|++||--.-+....+++....|..+..+.+|++++
T Consensus 541 rIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~il 619 (776)
T COG5167 541 RIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHIL 619 (776)
T ss_pred EecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEE
Confidence 55554 23222222 2344444444543 334899999999999999654444556677778899999999999877
Q ss_pred EEECCCeEEEEECCC
Q 002490 152 SASLDQTVRVWDIGA 166 (916)
Q Consensus 152 s~s~dg~v~vwd~~~ 166 (916)
+.+ ...+.+-|+..
T Consensus 620 aTC-k~yllL~d~~i 633 (776)
T COG5167 620 ATC-KNYLLLTDVPI 633 (776)
T ss_pred Eee-cceEEEEeccc
Confidence 766 45788888754
No 484
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.96 E-value=1.5 Score=46.57 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=75.1
Q ss_pred HHHHhcccHHHHHhhhccCcc----c------chhHHHHHH-------HCCCchhhccccc-Cc--c-hhhhhhhhcCCH
Q 002490 602 KLSLLRKRYDHVMSMIRNSQL----C------GQAMIAYLQ-------QKGFPEVALHFVK-DE--R-TRFNLALESGNI 660 (916)
Q Consensus 602 ~~al~~~~~~~~~~~~~~~~~----~------~~~i~~~l~-------~~~~~e~al~~~~-~~--~-~~f~lal~~g~~ 660 (916)
-..|.+|+++.|+.+++.-+. + ...+..|+| ...|.++|+..-+ ++ . .+=+.+...|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 445789999988887652211 1 122334553 3444455443221 00 0 022466788999
Q ss_pred HHHHHHHHHc-C-CHH---HHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHHHcCCchhHH
Q 002490 661 QIAVASAKEI-D-EKD---HWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQF 735 (916)
Q Consensus 661 ~~A~~~a~~~-~-~~~---~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~~~~~ 735 (916)
+.|.+.+++. + +.. ..-.+|-.|..+|+++.|..||.+++-. ..++.+-|..++.|-+.-++...+.
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--------l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--------LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 9999999864 2 233 3445688899999999999999775422 2344455555555555554444444
Q ss_pred HH
Q 002490 736 HN 737 (916)
Q Consensus 736 ~~ 737 (916)
+.
T Consensus 579 e~ 580 (840)
T KOG2003|consen 579 EL 580 (840)
T ss_pred HH
Confidence 43
No 485
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.83 E-value=30 Score=40.14 Aligned_cols=155 Identities=12% Similarity=0.156 Sum_probs=92.1
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCCEEEEEEeeCCCCCCCccccccccCceeEEEEEeC------CcEEEEEcC--C--CEE
Q 002490 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIAR------NRFAVLDKS--S--NQV 436 (916)
Q Consensus 367 ~i~~l~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~------~~~l~~~~~--d--~~I 436 (916)
.+..+.|.++++.+++.. .+|.+++|++..............+...+.--.|.++ ..++++.+. + -..
T Consensus 131 kvv~Ik~~~~~~~I~vvl--~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 131 KVVGIKFSSDGKIIYVVL--ENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ceEEEEEecCCCEEEEEE--cCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 788899999888877776 4589999999333322211111122222221133332 234444332 2 356
Q ss_pred EEEcc--CCceEEEee---CCC--ceeEEEEeCCceEEEEECCEEEEEEcCCCeEEEEEEcC-Ce-----eEEEE-cCCC
Q 002490 437 LVKNL--KNEVVKKSI---LPI--AADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTP-FV-----KYVVW-SNDM 502 (916)
Q Consensus 437 ~iwdl--~~~~~~~i~---~~~--~v~~l~~s~~g~~l~~~d~~v~l~d~~~~~~~~~~~~~-~v-----~~v~~-s~d~ 502 (916)
+++.+ .+..+..+. .+. ...+.+.-.+|.+....++.+.+|++.+-+...++..+ -+ .-+.+ +|+.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~ 288 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSP 288 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCC
Confidence 67777 333333332 111 22333333468888889999999999999888887742 11 12233 3567
Q ss_pred CEEEEEeCCeEEEEecCCcce
Q 002490 503 ESVALLSKHAIIIASKKLVHQ 523 (916)
Q Consensus 503 ~~la~~~~~~i~i~~~~~~~~ 523 (916)
+++....++.|++.|...+-+
T Consensus 289 nRvLLs~~nkIyLld~~~~si 309 (670)
T PF10395_consen 289 NRVLLSVNNKIYLLDLKFESI 309 (670)
T ss_pred CeEEEEcCCEEEEEeehhhhh
Confidence 788888899999999876553
No 486
>PHA02790 Kelch-like protein; Provisional
Probab=91.74 E-value=7.3 Score=44.46 Aligned_cols=142 Identities=11% Similarity=-0.061 Sum_probs=67.8
Q ss_pred CCCEEEEEecCC-----eEEEEECCCCceEEE--ecccccCEEEEEEecCCCEEEEEECC--CeEEEEECCCCeeEEEEe
Q 002490 20 KRPWILASLHSG-----VIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHRCLFTLL 90 (916)
Q Consensus 20 ~~~~la~~~~dg-----~I~lwd~~~~~~~~~--~~~h~~~V~~i~fsp~~~~l~s~~~d--g~I~vWd~~~~~~~~~l~ 90 (916)
++..+++|+.++ .+..||..+++.... +.........+ .-++.+.+.||.+ ..+..||..+++....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345557776542 567788777653332 21111111222 3467777888754 357788876554332111
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEE--EeCCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 002490 91 GHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (916)
Q Consensus 91 ~h~~~v~~v~fs~~~~~l~s~s~d---g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~~p~~~~l~s~s~dg~v~vwd~~ 165 (916)
-...........-++...+.|+.+ ..+..||..+.+-... +...... .+++ .-++...+.| |.+.+||..
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC---CceEEecCC
Confidence 111111111222356666666654 3467888776543321 1111111 1222 2245555555 356778876
Q ss_pred CCc
Q 002490 166 ALR 168 (916)
Q Consensus 166 ~~~ 168 (916)
+.+
T Consensus 424 ~~~ 426 (480)
T PHA02790 424 SNT 426 (480)
T ss_pred CCc
Confidence 543
No 487
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.71 E-value=1.8 Score=50.40 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=79.9
Q ss_pred hhhcCCHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------chhhHHhhcCCHHHHHH
Q 002490 654 ALESGNIQIAVASAK-----EIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLSK 720 (916)
Q Consensus 654 al~~g~~~~A~~~a~-----~~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~--------~l~~l~~~~g~~~~l~k 720 (916)
.-+.|+++.|+.+.. .-+++..|..+|+.+.++|+++.|.-||.++=... +=+.||..+|+..++..
T Consensus 183 yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 183 YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 446777887777643 23578999999999999999999999997742221 22345666666554321
Q ss_pred H-HHHHHHcC---------CchhHHHHHHhcCCHHHHHHHHHH----------cCCchHHHHHHHhcCChHHHHHHHHH
Q 002490 721 M-LKIAEVKN---------DVMGQFHNALYLGDVKERVKILES----------AGHLPLAYITASVHGLQDVAERLAAE 779 (916)
Q Consensus 721 ~-~~~~~~~~---------~~~~~~~~~~~~g~~~ea~~~~~~----------~g~~~~A~~~a~~~g~~~~a~~l~~~ 779 (916)
- .++.+..+ -.-..++.+.-.++.+-|++.|.. +...+...++.-.+..++.|....-.
T Consensus 263 ~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 263 TFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 1 11111111 111234555567777888877765 23466677788888888888877544
No 488
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.71 E-value=37 Score=40.93 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeeEEEEecCCCC--------EEEEEEcC----------------CCCEEEEEECCCcEE
Q 002490 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDY--------IRTVQFHH----------------EYPWIVSASDDQTIR 118 (916)
Q Consensus 63 ~~~l~s~~~dg~I~vWd~~~~~~~~~l~~h~~~--------v~~v~fs~----------------~~~~l~s~s~dg~I~ 118 (916)
+..+..++.++.|.-.|..+|+.+.++...... .+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777777889999999999988876532211 12233321 234788888999999
Q ss_pred EEeCCCCeEEEEEeCCCCceE-------------EEEEec--CCCEEEEEEC----------CCeEEEEECCCCcceec
Q 002490 119 IWNWQSRTCISVLTGHNHYVM-------------CASFHP--KEDLVVSASL----------DQTVRVWDIGALRKKTV 172 (916)
Q Consensus 119 iwd~~~~~~~~~~~~h~~~v~-------------~l~~~p--~~~~l~s~s~----------dg~v~vwd~~~~~~~~~ 172 (916)
-.|.++|+.+..+.. ++.|. .+.-.| .+..+++++. +|.|+-+|.++++..-.
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999998876632 22211 011112 1346666643 68899999999876543
No 489
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.62 E-value=0.38 Score=37.24 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=40.3
Q ss_pred hhhhhcCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 002490 652 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRT 699 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~ 699 (916)
...++.|+++.|.+..+.+ +++..|..+|..+..+|+++.|...|.++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567889999999998754 46789999999999999999999999765
No 490
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.58 E-value=6.2 Score=45.98 Aligned_cols=142 Identities=16% Similarity=0.226 Sum_probs=91.1
Q ss_pred CCEEEEEecCCeEEEEECCCCceEE------Eec----------------ccccCEEEEEEec--CCCEEEEEECCCeEE
Q 002490 21 RPWILASLHSGVIQLWDYRMGTLID------RFD----------------EHDGPVRGVHFHK--SQPLFVSGGDDYKIK 76 (916)
Q Consensus 21 ~~~la~~~~dg~I~lwd~~~~~~~~------~~~----------------~h~~~V~~i~fsp--~~~~l~s~~~dg~I~ 76 (916)
+++++++. .+.|.||+...-.... .+. .-...|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777774 7899999975432211 110 0111244444332 445789999999999
Q ss_pred EEECCC-------C-------------eeEEEEecCCCCEEEEEEc--CCCCEEEEEECCCcEEEEeCCCC--e-EEEEE
Q 002490 77 VWNYKM-------H-------------RCLFTLLGHLDYIRTVQFH--HEYPWIVSASDDQTIRIWNWQSR--T-CISVL 131 (916)
Q Consensus 77 vWd~~~-------~-------------~~~~~l~~h~~~v~~v~fs--~~~~~l~s~s~dg~I~iwd~~~~--~-~~~~~ 131 (916)
+|.+++ . ++.+.+. -....+.++++ ...++||+++....|.||-.... + ....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 0 0122222 34478999998 77888888888888888755331 1 11111
Q ss_pred eCCCCceEEEEEecCC---C---EEEEEECCCeEEEEEC
Q 002490 132 TGHNHYVMCASFHPKE---D---LVVSASLDQTVRVWDI 164 (916)
Q Consensus 132 ~~h~~~v~~l~~~p~~---~---~l~s~s~dg~v~vwd~ 164 (916)
..|.+.|.+++|.++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2366789999998754 2 7888999999999888
No 491
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.54 E-value=25 Score=38.75 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=86.8
Q ss_pred CCEEEEEECCCcEEEEeCCCCe-----EEEEEeCCCCceEEEEEec-----CCCEEEEEECCCeEEEEECCCCcceeccC
Q 002490 105 YPWIVSASDDQTIRIWNWQSRT-----CISVLTGHNHYVMCASFHP-----KEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (916)
Q Consensus 105 ~~~l~s~s~dg~I~iwd~~~~~-----~~~~~~~h~~~v~~l~~~p-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 174 (916)
...|++||..|.++||+...+. .+-. ..-..+|..+..-+ +...|++ -.-..+.+|.+........
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~-- 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE-- 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc--
Confidence 3489999999999999986433 1112 22456777776532 1224444 3466788888732111100
Q ss_pred CccceeeccccccccccccceEEEEEeccC--CCeeEEEEcC----C-CCEEEEEECCCcEEEEECCCCcceeeeeeecC
Q 002490 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHD--RGVNWAAFHP----T-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247 (916)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p----~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 247 (916)
.+....+. ....|. .....+++-| . ..++.+-+.||++.+|+-+.... ...+..
T Consensus 113 ---------------~g~~~~L~-~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp~- 173 (418)
T PF14727_consen 113 ---------------HGNQYQLE-LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLPD- 173 (418)
T ss_pred ---------------cCcEEEEE-EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcCC-
Confidence 00001111 112222 2233333333 1 35788889999999999776542 222222
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEC
Q 002490 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 248 ~~~v~~l~~sp~~~~l~s~~~dg~i~vwd~ 277 (916)
.--...+.|.|.-+.+++++.+..+..|..
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 333455788898899999998888888864
No 492
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.28 E-value=1.3 Score=49.31 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred hhhhcCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------chhhHHhhcCCHHHHH
Q 002490 653 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLS 719 (916)
Q Consensus 653 lal~~g~~~~A~~~a~~~-----~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~--------~l~~l~~~~g~~~~l~ 719 (916)
.-.|.|+++.|....+.. .=.+...+||...-+||+++.|.+||+.+=..+ .+--.|-..|+.+.+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 446788888888776642 113456789999999999999999997643322 2222344444444444
Q ss_pred HHHHHHHHcCCchhHHHH-----HHhcCCHHHHHHHHHHc
Q 002490 720 KMLKIAEVKNDVMGQFHN-----ALYLGDVKERVKILESA 754 (916)
Q Consensus 720 k~~~~~~~~~~~~~~~~~-----~~~~g~~~ea~~~~~~~ 754 (916)
.+-..+..-+-...-+|. +.-.|++.+||+-|..+
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 443333222222222222 11267777777777664
No 493
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.19 E-value=4.2 Score=48.46 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=8.1
Q ss_pred hcCChHHHHHHHHH
Q 002490 766 VHGLQDVAERLAAE 779 (916)
Q Consensus 766 ~~g~~~~a~~l~~~ 779 (916)
..|++++|.+..++
T Consensus 330 ~~G~~~eA~~~l~~ 343 (656)
T PRK15174 330 QVGQYTAASDEFVQ 343 (656)
T ss_pred HCCCHHHHHHHHHH
Confidence 44666666665544
No 494
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.08 E-value=2.5 Score=44.92 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHhhcC--------ccchhhHHhhcCCHHHHHHHHHHHHHcCCc-----hhHHHH
Q 002490 671 DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHN 737 (916)
Q Consensus 671 ~~~~~w~~la~~al~~g~~~~A~~~y~~~~~--------~~~l~~l~~~~g~~~~l~k~~~~~~~~~~~-----~~~~~~ 737 (916)
.+|.....||+.+-+.|+-..|.+||-..-. .+-|..-|+.|--.+|.-...+.+..-.-+ ++.+.+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 4688899999999999999999999865332 234445566666666655444433222222 222345
Q ss_pred HHhcCCHHHHHHHHHHcC--------CchHHHHHHHhcCChH
Q 002490 738 ALYLGDVKERVKILESAG--------HLPLAYITASVHGLQD 771 (916)
Q Consensus 738 ~~~~g~~~ea~~~~~~~g--------~~~~A~~~a~~~g~~~ 771 (916)
+...|++..|..+|++.. ++.--+.+|-.+|+-+
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 556888888888888754 2334456666777654
No 495
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.96 E-value=0.55 Score=36.85 Aligned_cols=32 Identities=19% Similarity=0.462 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHhhcCcc
Q 002490 672 EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE 703 (916)
Q Consensus 672 ~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~ 703 (916)
++..|..+|..+..+|+++.|+.+|.++=+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 56789999999999999999999997765554
No 496
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.96 E-value=3 Score=38.60 Aligned_cols=82 Identities=9% Similarity=-0.054 Sum_probs=52.9
Q ss_pred hhhhhcCCHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCChhHHHHHHHhhcCccchhhHHhhcCCHHHHHHHHHHHH
Q 002490 652 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAE 726 (916)
Q Consensus 652 ~lal~~g~~~~A~~~a~~-----~~~~~~w~~la~~al~~g~~~~A~~~y~~~~~~~~l~~l~~~~g~~~~l~k~~~~~~ 726 (916)
..+.+.|+++.|...++. -.+...|..+|..+...|+++.|+.+|.++-..+- ++.+..-.+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p--------~~~~a~~~l----- 98 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA--------SHPEPVYQT----- 98 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCcHHHHHH-----
Confidence 355778888888777664 24677888888888888888888888866433211 122222222
Q ss_pred HcCCchhHHHHHHhcCCHHHHHHHHHHc
Q 002490 727 VKNDVMGQFHNALYLGDVKERVKILESA 754 (916)
Q Consensus 727 ~~~~~~~~~~~~~~~g~~~ea~~~~~~~ 754 (916)
..++..+|++++|++.|..+
T Consensus 99 --------g~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 99 --------GVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred --------HHHHHHcCCHHHHHHHHHHH
Confidence 24455678888887777653
No 497
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.93 E-value=1.8 Score=41.62 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHcCC----HHHHHHHHHHHHHcCChhHHHHHHHhhcCcc-----------chhhHHhhcCCHHHHHHH
Q 002490 657 SGNIQIAVASAKEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFE-----------RLSFLYLITGNMDKLSKM 721 (916)
Q Consensus 657 ~g~~~~A~~~a~~~~~----~~~w~~la~~al~~g~~~~A~~~y~~~~~~~-----------~l~~l~~~~g~~~~l~k~ 721 (916)
...++.-++.+++... ...|..+|+...+-|+++.|.++|.++.++- .+.++.+..+|+..+.+.
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3335555555554322 3468899999999999999999999887764 344455566666654433
No 498
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.92 E-value=20 Score=42.70 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECC---------CCce--E-EEe--------cccccCEEEEEEecC---CCEE
Q 002490 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYR---------MGTL--I-DRF--------DEHDGPVRGVHFHKS---QPLF 66 (916)
Q Consensus 10 ~~V~~l~~sp~~~~la~~~~dg~I~lwd~~---------~~~~--~-~~~--------~~h~~~V~~i~fsp~---~~~l 66 (916)
-.|..|.+||+|.+||..|..|.+.+.=.+ .|+. . +++ ..+...|..+.|||. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468899999999999999887754443221 1111 1 111 134567999999996 4788
Q ss_pred EEEECCCeEEEEECCCC
Q 002490 67 VSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 67 ~s~~~dg~I~vWd~~~~ 83 (916)
+.-..|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88889999999999743
No 499
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.89 E-value=1 Score=31.13 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.4
Q ss_pred CCEEEEEEeCCC---CEEEEEecCCeEEEEECCC
Q 002490 10 NRVKGLSFHSKR---PWILASLHSGVIQLWDYRM 40 (916)
Q Consensus 10 ~~V~~l~~sp~~---~~la~~~~dg~I~lwd~~~ 40 (916)
+.|.++.|||.. .+|+.+-+.|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 5888888899999999985
No 500
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.64 E-value=10 Score=44.26 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCcceeccCCccceeeccccccccccccceEEEEEeccCCCeeEEEEc--CCCCEEEEEE
Q 002490 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGA 223 (916)
Q Consensus 146 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~ 223 (916)
....|+.+..||.|.+|.++..-....... .............+.+.+ .-....+.++++ ...++||+++
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~-------~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSs 184 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFS-------EDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSS 184 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhc-------cccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEec
Confidence 345889999999999998754211000000 000000000000011222 234578999999 8888999999
Q ss_pred CCCcEEEEECCCC--cceeeeeeecCCCCeEEEEEccCC---C---EEEEEeCCCcEEEEEC
Q 002490 224 DDRQVKLWRMNET--KAWEVDTLRGHMNNVSCVMFHAKQ---D---IIVSNSEDKSIRVWDV 277 (916)
Q Consensus 224 ~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~---~---~l~s~~~dg~i~vwd~ 277 (916)
....|.+|-.... +.. ...-..|..+|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 185 Ns~~VTVFaf~l~~~r~~-~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFY-HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CCceEEEEEEeccccccc-cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888865542 211 11122367789999997743 2 7888999999998887
Done!