Query 002490
Match_columns 916
No_of_seqs 1090 out of 3809
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 21:10:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002490.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_54-57//hhsearch_pdb/002490hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 727.6 83.4 727 1-781 5-790 (814)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 482.5 55.2 526 4-546 610-1235(1249)
3 2ymu_A WD-40 repeat protein; u 1.0 1 1 480.6 70.5 523 3-548 10-568 (577)
4 1nr0_A Actin interacting prote 1.0 1 1 463.9 58.2 498 6-547 15-598 (611)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 457.4 50.4 435 46-521 610-1159(1249)
6 1nr0_A Actin interacting prote 1.0 1 1 451.3 63.1 480 2-519 52-610 (611)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 446.3 62.0 659 42-784 4-779 (814)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 443.7 66.5 529 42-591 7-575 (577)
9 1pgu_A Actin interacting prote 1.0 1 1 411.4 56.2 487 6-546 15-600 (615)
10 1pgu_A Actin interacting prote 1.0 1 1 409.7 55.0 469 2-521 56-615 (615)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=727.63 Aligned_cols=727 Identities=25% Similarity=0.448 Sum_probs=623.1
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 94121225787899999179998999966992999987878248796154659899999159999999978984999977
Q 002490 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (916)
Q Consensus 1 ~l~~l~~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~ 80 (916)
+.+.|.+|+++|++++|||++++|++++.+|.|++||+.+++.+..+.+|.++|++++|+|++++|++++.|+.|++|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 00045058985689998899998999947998999989999167787338996889999689998999928994999989
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-EEEEEEECCCCCEEEEEEEC-CCCEEEEEECCCE
Q ss_conf 999158998138998899999089999999989992999969999-58999707998659999924-9999999979991
Q 002490 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHP-KEDLVVSASLDQT 158 (916)
Q Consensus 81 ~~~~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~dg~ 158 (916)
.+++.+.++.+|.+.|++++|+|+++++++++.|++|++|++.++ .....+.+|...|.+++|+| ++..+++++.|++
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCE
T ss_conf 99958799816899789999958999899992899899998999954879983799868899997699999999948894
Q ss_pred EEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCC
Q ss_conf 99999799830001688651121146544326511259999815678734999839--9998999978991999977898
Q 002490 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNET 236 (916)
Q Consensus 159 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~~~dg~I~iwd~~~~ 236 (916)
|++||+....... .....+...+.+++|+| +++++++++.|+.|++|+..++
T Consensus 165 v~vwd~~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 165 VKVWSLGQSTPNF--------------------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp EEEEETTCSSCSE--------------------------EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred EEEEECCCCCCEE--------------------------EEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 9999899996106--------------------------98358889779999997799989999938997999999999
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCC--EEEEEECCCCE
Q ss_conf 6101235606888859999904999999995999299997998811577513577489999945998--69998379914
Q 002490 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMI 314 (916)
Q Consensus 237 ~~~~~~~~~~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~~~--~la~g~~~~~~ 314 (916)
+. +..+.+|...|++++|+|+++++++++.||.|++||+.++.....+..+...+++++|+|++. +++++.++++.
T Consensus 219 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred CE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEE
T ss_conf 18--8998478888789998599999999908996999989999477784068886799999249995099999079879
Q ss_pred EEEECCCCCEEEECCC--EEEEE-ECC---EEEE------EECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEE
Q ss_conf 7885388424774399--89999-298---5999------9900796033497148999888868829997489989999
Q 002490 315 VFKLERERPAFAVSGD--SLFYA-KDR---FLRY------YEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLI 382 (916)
Q Consensus 315 v~~~~~~~~~~s~~~~--~l~~~-~d~---~i~i------~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~llv 382 (916)
+|++....+....+++ .++.. .+. .+.. |+...+............+ ...+.+++|+|+++.+++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~la~ 373 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV---DVFPQSLAHSPNGRFVTV 373 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC---SSCCSEEEECTTSSEEEE
T ss_pred EEECCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC---CCCCCEEEECCCCCEEEE
T ss_conf 99767997416777998789977636641124665304655555676201465117887---657740689999998999
Q ss_pred EECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCCCEEEEEECC-CCEEEEEEE
Q ss_conf 9807997899999208987888654445458155999985991999986998899982577247876279-761199872
Q 002490 383 CSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILP-IAADAIFYA 461 (916)
Q Consensus 383 ~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~-~~v~~i~~s 461 (916)
+++ +.+.+|++.. ....+.+.+.+++|+|+++++++++.++.+.+|+.- ..+ ..+..+.|+
T Consensus 374 ~~~---~~~~i~~~~~--------~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~-------~~~~~~v~~~~~s 435 (814)
T 3mkq_A 374 VGD---GEYVIYTALA--------WRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF-------KEVTSWSVPMHSA 435 (814)
T ss_dssp EET---TEEEEEETTT--------TEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETT-------EECTTCCCCCSSC
T ss_pred ECC---CEEEEEECCC--------CCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECC-------CCCCCEEECCCCC
T ss_conf 429---8899998745--------445679954799994799859999689839999777-------7752439737867
Q ss_pred CCC----EEEEE-ECCEEEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEE------ECCEEEEEECCC----------
Q ss_conf 882----09999-799899997388819999975984599995899899999------389599993487----------
Q 002490 462 GTG----NLLCR-AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALL------SKHAIIIASKKL---------- 520 (916)
Q Consensus 462 ~~g----~~l~~-~d~~i~i~d~~~~~~~~~~~~~~v~~v~~s~dg~~la~~------~~~~i~i~~~~~---------- 520 (916)
|+| .++.. .++.|++||+.+++.+..+.... ..+.|||||+++++. +++.++++..+.
T Consensus 436 ~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (814)
T 3mkq_A 436 IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA-KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNG 514 (814)
T ss_dssp CCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE-EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHT
T ss_pred CCCEECCEEEEEECCCEEEEEECCCCCEEEEEECCC-CEEEECCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCC
T ss_conf 552365469999669989999987695999973588-8799969999999998676667742899995468866666416
Q ss_pred ---------CCEEEEEE-EEEEEEEEEECCCEEEEEC-CCCEEEECCCCCEEEEEEECCEEEEEE--EECCEEEEEECCC
Q ss_conf ---------41488741-0157788992499699976-892468824893579987031089999--9188899992799
Q 002490 521 ---------VHQCTLHE-TIRVKSGAWDDNGVFIYTT-LNHIKYCLPNGDSGIIRTLDVPIYITK--VSGNTIFCLDRDG 587 (916)
Q Consensus 521 ---------~~~~~~~~-~~~i~s~~w~~~~~~l~~t-~~~~~~~l~~~~~~~i~~~~~~~~~~~--~~~~~l~~~~~~~ 587 (916)
.....+.+ ...+++++|+. ++++|++ .++++|+ .+++.+++..++.++++++ ..+++++++++++
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~i~s~~w~~-~~~i~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 592 (814)
T 3mkq_A 515 NIDDSEGVDEAFDVLYELSESITSGKWVG-DVFIFTTATNRLNYF-VGGKTYNLAHYTKEMYLLGYLARDNKVYLADREV 592 (814)
T ss_dssp CCBTTTBCTTTEEEEEEECSCCSEEEEET-TEEEEECTTSEEEEE-ETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTC
T ss_pred CCCCCCCHHHHEEEEEEECCEEEEEEEEC-CEEEEECCCCEEEEE-ECCEEEEEEECCCCEEEEEEEECCCEEEEECCCC
T ss_conf 87621250222136457642787659808-889997688708999-6986689999896679999983299999992888
Q ss_pred CEEEEEECHHHHHHHHHHHCCCHHHHHH-HH---C-CCCCCCHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHCCCHHH
Q ss_conf 7599990803787889875145888985-30---0-58546305889999779812010244582212356541299999
Q 002490 588 KNRAIVIDATEYIFKLSLLRKRYDHVMS-MI---R-NSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQI 662 (916)
Q Consensus 588 ~~~~~~id~~~~~f~~al~~~~~~~~~~-~~---~-~~~~~~~~i~~~l~~~~~~e~al~~~~~~~~~f~la~~~g~~~~ 662 (916)
.+..+.++..++.|+.++.++++++|.+ ++ + ...+ +.++.|++++|+++.|+++++++.++|++++++|+++.
T Consensus 593 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~--~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 593 HVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSL--TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTL 670 (814)
T ss_dssp CEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHH--HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHH
T ss_pred CEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCHHHHEECCCCCCHHEEHHHHCCCHHH
T ss_conf 8799998909999969987079999998887428846789--99999998689868960527893142502145099999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 99999980997789999999998589337889988513855025578662899999999999998298046788998528
Q 002490 663 AVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLG 742 (916)
Q Consensus 663 A~~~a~~~~~~~~w~~la~~al~~g~~~~Ae~~y~~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 742 (916)
|+++++.++++..|++||++|+++|++++|++||++++|++++.+||..+|+.+++.+++++++.+++...++++++++|
T Consensus 671 A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g 750 (814)
T 3mkq_A 671 ARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAG 750 (814)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 99999861767689999999998499899999998702713558998772999999999999998586679999998809
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHCCCHH-HHHHHHHHHC
Q ss_conf 99899999998599468899999509938-9999998819
Q 002490 743 DVKERVKILESAGHLPLAYITASVHGLQD-VAERLAAELG 781 (916)
Q Consensus 743 ~~~ea~~~~~~~g~~~~A~~~a~~~g~~~-~a~~~~~~~~ 781 (916)
++++|+++|+++++|++|+.+|++|+.++ .+.++.+++.
T Consensus 751 ~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~ 790 (814)
T 3mkq_A 751 DIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWK 790 (814)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999869947899999870997578899999999
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=482.49 Aligned_cols=526 Identities=17% Similarity=0.260 Sum_probs=306.9
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 21225787899999179998999966992999987878248796154659899999159999999978984999977999
Q 002490 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (916)
Q Consensus 4 ~l~~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~~~ 83 (916)
.+.+|.+.|++++|+|+++++++++.||.|++||..+++.+..+.+|.+.|++++|+|+++++++++.|+.|++||+.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 87166664899998799998999948894999998999788876067777899999269998999818995999877999
Q ss_pred EEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 15899813899889999908--9999999989992999969999589997079986599999249999999979991999
Q 002490 84 RCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~i~fs~--~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~dg~i~i 161 (916)
+++.++.+|...|.++.|++ ++.++++++.|+.|++||+.+++++..+.+|...|.+++|+|+++++++++.|++|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred CEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 36899958997379999840899659999808970999989996342201277797889999259998999978985999
Q ss_pred EECCCCCCEECCCCCCCE-----------------EECCCCC----------CCCCCCC-CEEEEEEECCCCCEEEEEEC
Q ss_conf 997998300016886511-----------------2114654----------4326511-25999981567873499983
Q 002490 162 WDIGALRKKTVSPADDIL-----------------RLSQMNT----------DLFGGVD-AVVKYVLEGHDRGVNWAAFH 213 (916)
Q Consensus 162 wd~~~~~~~~~~~~~~~~-----------------~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~v~~i~~~ 213 (916)
||+............... .....+. .++.... ........+|...+.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEEC
T ss_conf 96888865530202321024677644565017999997899889997589599999568972357747877760799982
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE----------
Q ss_conf 9999899997899199997789861012356068888599999049999999959992999979988115----------
Q 002490 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV---------- 283 (916)
Q Consensus 214 p~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~---------- 283 (916)
|+++++++++.++.|++|+..++.. +..+.+|...|++++|+|+++++++++.|+.+++|++.+....
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~ 927 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCCE--EEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEE
T ss_conf 7888899994798699998678956--53227876656899998999989999589728988746652010211331036
Q ss_pred -------------------E--------EEECCCCCEEEEEEECCCCEEEEEECC-CCEEEEECCCCC------------
Q ss_conf -------------------7--------751357748999994599869998379-914788538842------------
Q 002490 284 -------------------Q--------TFRREHDRFWILASHPEMNLLAAGHDS-GMIVFKLERERP------------ 323 (916)
Q Consensus 284 -------------------~--------~~~~~~~~i~~i~~sp~~~~la~g~~~-~~~v~~~~~~~~------------ 323 (916)
. ........+.+++++|++.++++|+.+ .+.+|++.....
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~ 1007 (1249)
T 3sfz_A 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007 (1249)
T ss_dssp EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCC
T ss_pred EEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEE
T ss_conf 89759986899813776248984476508972567278999958997799986999889997578723443036777168
Q ss_pred --EEEECCCEEEEE-ECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
Q ss_conf --477439989999-29859999900796033497148999888868829997489989999980799789999920898
Q 002490 324 --AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (916)
Q Consensus 324 --~~s~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~llv~~~~~~g~i~i~~~~~~~ 400 (916)
.++++++.++++ .++.+++|++.+++..... ++.. .+.++.|+|++.. + +++ .++.+++|++....
T Consensus 1008 ~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~---~v~~~~~~~~~~l-~-~~~-~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-----AHQE---TVKDFRLLQDSRL-L-SWS-FDGTVKVWNVITGR 1076 (1249)
T ss_dssp CEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-----CCSS---CEEEEEECSSSEE-E-EEE-SSSEEEEEETTTTC
T ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE-----CCCC---CEEEEEECCCCCE-E-EEE-CCCCEEEEECCCCC
T ss_conf 9999899998999869987999987999668985-----2787---3899999089958-9-997-88968998889886
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEECCC-CCEEEEEECCC-CEEEEEEECCCEEEEE--ECCEEEE
Q ss_conf 788865444545815599998599199998699889998257-72478762797-6119987288209999--7998999
Q 002490 401 IGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVI 476 (916)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~~~-~v~~i~~s~~g~~l~~--~d~~i~i 476 (916)
. ......|.+.+.+++|+|+++++++++.|++|++|++. +.....+..|. .|.++.|+|+|.++++ .|+.|++
T Consensus 1077 ~---~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1077 I---ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp C---CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred E---EEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 5---5887466884899999899998999849994899878985001255068776799999799998999828997999
Q ss_pred EECCCCEEEEEE-----------ECCCEEEEEECCCCCEEEEEECCEEEEEECCCCCE-EEEE-EEEEEEEEEEECCCEE
Q ss_conf 973888199999-----------75984599995899899999389599993487414-8874-1015778899249969
Q 002490 477 FDLQQRLVLGDL-----------QTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQ-CTLH-ETIRVKSGAWDDNGVF 543 (916)
Q Consensus 477 ~d~~~~~~~~~~-----------~~~~v~~v~~s~dg~~la~~~~~~i~i~~~~~~~~-~~~~-~~~~i~s~~w~~~~~~ 543 (916)
||+.+++.+..+ ....+..+.|+||+.++++++ +.+.+|+...+.. ..+. ....+.+++|++++..
T Consensus 1154 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~ 1232 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRT 1232 (1249)
T ss_dssp EESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCC
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC-CEEEEEECCCCCEEEEEECCCCCCCEEEECCCCCE
T ss_conf 98899945788514444421025674289999978999899779-85999898889500464004775327999789877
Q ss_pred EEE
Q ss_conf 997
Q 002490 544 IYT 546 (916)
Q Consensus 544 l~~ 546 (916)
+++
T Consensus 1233 l~~ 1235 (1249)
T 3sfz_A 1233 YVT 1235 (1249)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=480.57 Aligned_cols=523 Identities=24% Similarity=0.379 Sum_probs=381.8
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 12122578789999917999899996699299998787824879615465989999915999999997898499997799
Q 002490 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (916)
Q Consensus 3 ~~l~~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~~ 82 (916)
++|+||+++|++++|||++++||+++.|+.|+||| .++++++++.+|.++|++++|+|++++|++++.|+.|++||. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~ 87 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 87 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-C
T ss_conf 39878998579999989989999993899899997-999789999689899899999899999999969897999989-9
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 91589981389988999990899999999899929999699995899970799865999992499999999799919999
Q 002490 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (916)
Q Consensus 83 ~~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~dg~i~iw 162 (916)
++++.++.+|...|.+++|+|+++++++++.|+.+++|+.... ......++...+.++.++|++..+++++.++.+++|
T Consensus 88 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (577)
T 2ymu_A 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCC-EEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECC
T ss_conf 9789999789998899999899998999807983352023552-001104777743555420377632002555310000
Q ss_pred ECCCCCCEECCCCCCCEE---ECCCCC-----------CCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 979983000168865112---114654-----------432651125999981567873499983999989999789919
Q 002490 163 DIGALRKKTVSPADDILR---LSQMNT-----------DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 228 (916)
Q Consensus 163 d~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~I 228 (916)
+................. ...... .++. .+......+.+|...+.+++|+|++.++++++.|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i 245 (577)
T 2ymu_A 167 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245 (577)
T ss_dssp CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf 000000000268776356654169977899985999899994-9996899994688988999997999999999189989
Q ss_pred EEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEE
Q ss_conf 99977898610123560688885999990499999999599929999799881157751357748999994599869998
Q 002490 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308 (916)
Q Consensus 229 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~~~~la~g 308 (916)
++|+..... +..+.+|...|.+++|+|+++.+++++.|+.+++|+.. ++....+..|...+++++++|++..++++
T Consensus 246 ~~w~~~~~~---~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 246 KLWNRNGQL---LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp EEECTTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCE---EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 999599979---99980688987999996899999999599979999489-95899970688976999999999999999
Q ss_pred ECC-CCEEEEECCCCC-------------EEEECCCEEEEE-ECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 379-914788538842-------------477439989999-29859999900796033497148999888868829997
Q 002490 309 HDS-GMIVFKLERERP-------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSY 373 (916)
Q Consensus 309 ~~~-~~~v~~~~~~~~-------------~~s~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 373 (916)
+.+ .+.+|+...... ++++++..++++ .++.+++|+... +....+ . ++.. .+++++|
T Consensus 322 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~~~--~--~~~~---~v~~~~~ 393 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL--T--GHSS---SVRGVAF 393 (577)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEEEE--E--CCSS---CEEEEEE
T ss_pred ECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCC-CEEEEE--C--CCCC---CEEEEEE
T ss_conf 699959999699972578747889779999989999999996999899990899-789985--2--7889---7489999
Q ss_pred CCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCCCEEEEEECCC
Q ss_conf 48998999998079978999992089878886544454581559999859919999869988999825772478762797
Q 002490 374 SPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI 453 (916)
Q Consensus 374 sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~ 453 (916)
+|+++.+++++ .++.+++|+.... .......|...+.+++|+|+++++++++.|+.|++|+..++....+..+.
T Consensus 394 s~dg~~l~~~~--~d~~v~~~~~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~ 467 (577)
T 2ymu_A 394 SPDGQTIASAS--DDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS 467 (577)
T ss_dssp CTTSSCEEEEE--TTSEEEEECTTCC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCS
T ss_pred CCCCCEEEEEE--CCCEEEEEECCCC----EEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCC
T ss_conf 89999999994--9998999969997----89896288997579999899999999939998999979998899972789
Q ss_pred -CEEEEEEECCCEEEEE--ECCEEEEEECCCCEEEEEEEC--CCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEE
Q ss_conf -6119987288209999--799899997388819999975--9845999958998999993-895999934874148874
Q 002490 454 -AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLS-KHAIIIASKKLVHQCTLH 527 (916)
Q Consensus 454 -~v~~i~~s~~g~~l~~--~d~~i~i~d~~~~~~~~~~~~--~~v~~v~~s~dg~~la~~~-~~~i~i~~~~~~~~~~~~ 527 (916)
.+.+++|+|++++|++ .|+.|++|+. +++.+..+.. ..|..++|+||+++|++++ ++.|++|+...+.+..+.
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 97789999699999999919897999939-99789998679999899999189999999989699999969997898971
Q ss_pred E-EEEEEEEEEECCCEEEEECC
Q ss_conf 1-01577889924996999768
Q 002490 528 E-TIRVKSGAWDDNGVFIYTTL 548 (916)
Q Consensus 528 ~-~~~i~s~~w~~~~~~l~~t~ 548 (916)
. ...|.+++|++++.+|.+..
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE
T ss_conf 8888878999968999999990
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=463.86 Aligned_cols=498 Identities=15% Similarity=0.179 Sum_probs=325.5
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC--
Q ss_conf 225787899999179998999966992999987878248796154659899999159999999978984999977999--
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-- 83 (916)
Q Consensus 6 ~~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~~~-- 83 (916)
..+.+.+.+++|+|++++|++++ ++.|++|++.+++....+.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 74068236976679999799679-99799945787242737658998659999999996899994899789948989841
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCC----CEEEEECCCCEEEEEEECCCCCEEEEEEECCCC-EEEEEECCCE
Q ss_conf 15899813899889999908999999998999----299996999958999707998659999924999-9999979991
Q 002490 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ----TIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQT 158 (916)
Q Consensus 84 ~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~dg~ 158 (916)
....++.+|.+.|.+++|+|+++++++++.+. .|++|| .++....+.+|...|.+++|+|++. .+++++.|++
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCE
T ss_conf 566762255784489998999997999989977366999963--899763254788983699988999829999928980
Q ss_pred EEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 99999799830001688651121146544326511259999815678734999839999899997899199997789861
Q 002490 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (916)
Q Consensus 159 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~I~iwd~~~~~~ 238 (916)
|++||....+ ....+.+|...|.+++|+|++++|++++.|+.|++|+..+++.
T Consensus 172 v~lwd~~~~~---------------------------~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 172 VAIFEGPPFK---------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp EEEEETTTBE---------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEECCCCE---------------------------EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
T ss_conf 9999799975---------------------------7665200257169999979999899998999199988999828
Q ss_pred EEEEEEE-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC---CCCEEEEEEECCCCEEEEE
Q ss_conf 0123560-------68888599999049999999959992999979988115775135---7748999994599869998
Q 002490 239 WEVDTLR-------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE---HDRFWILASHPEMNLLAAG 308 (916)
Q Consensus 239 ~~~~~~~-------~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~i~~i~~sp~~~~la~g 308 (916)
...+. +|...|.+++|+|++++|++++.|++|++||+.+++.+.++..+ ......+.| ++..++++
T Consensus 225 --~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~ 300 (611)
T 1nr0_A 225 --TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI 300 (611)
T ss_dssp --EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEE
T ss_pred --EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEE
T ss_conf --66513664323566787899999799999999908980999968887013440478876640689997--38879999
Q ss_pred E-CCCCEEEEECCCC--------------CEEEECCCEEEEE-ECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 3-7991478853884--------------2477439989999-2985999990079603349714899988886882999
Q 002490 309 H-DSGMIVFKLERER--------------PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLS 372 (916)
Q Consensus 309 ~-~~~~~v~~~~~~~--------------~~~s~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 372 (916)
+ ++.+.+|+..... .+++++++.++++ .|+.+++||+.++...... ..++.. .+.+++
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~---~~~h~~---~v~~~~ 374 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF---PDVHAT---MITGIK 374 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS---SCSCSS---CEEEEE
T ss_pred ECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEC---CCCCCC---EEEEEE
T ss_conf 58996899968899744698378888899999189998999958984999978879256321---667765---078999
Q ss_pred ECCCCCEEEEEECCCCCEEEEEEEECCCCCCCC-------------------------------------CCCCCCCCCE
Q ss_conf 748998999998079978999992089878886-------------------------------------5444545815
Q 002490 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGD-------------------------------------SVQDAKKGLG 415 (916)
Q Consensus 373 ~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~-------------------------------------~~~~~~~~~i 415 (916)
|++++.. + +.+ .++.+++|+.......... .....+...+
T Consensus 375 ~s~~~~l-~-s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v 451 (611)
T 1nr0_A 375 TTSKGDL-F-TVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 451 (611)
T ss_dssp ECTTSCE-E-EEE-TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred ECCCCCE-E-EEE-CCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCCC
T ss_conf 8789969-9-998-489668954688543565212001489970799807996999996763999848943464068895
Q ss_pred EEEEEEECCCEEEEECCCCEEEEECCCCCEE---EEEECCCCEEEEEEECCCEEEEE--ECCEEEEEECCC-CEEEEE--
Q ss_conf 5999985991999986998899982577247---87627976119987288209999--799899997388-819999--
Q 002490 416 GSAIFIARNRFAVLDKSSNQVLVKNLKNEVV---KKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQ-RLVLGD-- 487 (916)
Q Consensus 416 ~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~---~~i~~~~~v~~i~~s~~g~~l~~--~d~~i~i~d~~~-~~~~~~-- 487 (916)
.+++|+|+++++++++.|++|++|++.+... ....+...|.+++|+|+|++|++ .|+.+++|++.+ ++.+..
T Consensus 452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred EEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEE
T ss_conf 49999289989999689973999994599222410157788607999989999899994899899988577872232102
Q ss_pred E--ECCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCC--E-EEEEE--EEEEEEEEEECCCEEEEEC
Q ss_conf 9--759845999958998999993-8959999348741--4-88741--0157788992499699976
Q 002490 488 L--QTPFVKYVVWSNDMESVALLS-KHAIIIASKKLVH--Q-CTLHE--TIRVKSGAWDDNGVFIYTT 547 (916)
Q Consensus 488 ~--~~~~v~~v~~s~dg~~la~~~-~~~i~i~~~~~~~--~-~~~~~--~~~i~s~~w~~~~~~l~~t 547 (916)
. +...|.+++|+||+++||+++ ++++++|+.+... . ..... ...|.+++|.+++. +++.
T Consensus 532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~ 598 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSA 598 (611)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEE
T ss_pred EEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEE
T ss_conf 640466425899899899799997997299997887555632644467656711899858997-9995
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=457.36 Aligned_cols=435 Identities=16% Similarity=0.239 Sum_probs=194.1
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 96154659899999159999999978984999977999158998138998899999089999999989992999969999
Q 002490 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125 (916)
Q Consensus 46 ~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg~I~iwd~~~~ 125 (916)
.+.+|.+.|++++|+|+++++++++.|++|++|+..+++.+.++.+|...|.+++|+|+++++++++.|++|++||+.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 87166664899998799998999948894999998999788876067777899999269998999818995999877999
Q ss_pred EEEEEEECCCCCEEEEEEECC--CCEEEEEECCCEEEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 589997079986599999249--999999979991999997998300016886511211465443265112599998156
Q 002490 126 TCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (916)
Q Consensus 126 ~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (916)
+++..+.+|...|.++.|+|+ +.++++++.|+.|++||+.+++. ...+.+|
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---------------------------~~~~~~h 742 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---------------------------RNTMFGH 742 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---------------------------EEEECCC
T ss_pred CEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH---------------------------HHEECCC
T ss_conf 3689995899737999984089965999980897099998999634---------------------------2201277
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE-------------------------------------------
Q ss_conf 7873499983999989999789919999778986101-------------------------------------------
Q 002490 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE------------------------------------------- 240 (916)
Q Consensus 204 ~~~v~~i~~~p~~~~l~~~~~dg~I~iwd~~~~~~~~------------------------------------------- 240 (916)
...|.+++|+|+++++++++.||.|++||+.++....
T Consensus 743 ~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~ 822 (1249)
T 3sfz_A 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822 (1249)
T ss_dssp SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEE
T ss_conf 79788999925999899997898599996888865530202321024677644565017999997899889997589599
Q ss_pred ---------EEE-EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEE-
Q ss_conf ---------235-606888859999904999999995999299997998811577513577489999945998699983-
Q 002490 241 ---------VDT-LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH- 309 (916)
Q Consensus 241 ---------~~~-~~~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~~~~la~g~- 309 (916)
... ..+|...+.++.|+|++.++++++.++.|++|++.++..+..+..|...+.+++|+|++..+++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 99956897235774787776079998278888999947986999986789565322787665689999899998999958
Q ss_pred CCCCEEEEECCC---------------------------------------------------CCEEEECCCEEEEE-EC
Q ss_conf 799147885388---------------------------------------------------42477439989999-29
Q 002490 310 DSGMIVFKLERE---------------------------------------------------RPAFAVSGDSLFYA-KD 337 (916)
Q Consensus 310 ~~~~~v~~~~~~---------------------------------------------------~~~~s~~~~~l~~~-~d 337 (916)
++.+.+|++... ..+++++++.++++ .+
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCC
T ss_conf 97289887466520102113310368975998689981377624898447650897256727899995899779998699
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 85999990079603349714899988886882999748998999998079978999992089878886544454581559
Q 002490 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS 417 (916)
Q Consensus 338 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i~~ 417 (916)
+.+++|++.++...... .++.. .+++++|+|+++.++.++ .++.+.+|++...... ....|...+.+
T Consensus 983 g~i~i~d~~~~~~~~~~----~~h~~---~v~~l~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~----~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSG----VGHKK---AVRHIQFTADGKTLISSS--EDSVIQVWNWQTGDYV----FLQAHQETVKD 1049 (1249)
T ss_dssp SCCEEEETTTTSCEEEC----CCCSS---CCCCEEECSSSSCEEEEC--SSSBEEEEETTTTEEE----CCBCCSSCEEE
T ss_pred CCEEEEECCCCCEEEEC----CCCCC---CEEEEEECCCCCEEEEEC--CCCEEEEEECCCCCEE----EEECCCCCEEE
T ss_conf 98899975787234430----36777---168999989999899986--9987999987999668----98527873899
Q ss_pred EEEEECCCEEEEECCCCEEEEECCC-CCEEEEEECCC-CEEEEEEECCCEEEEE--ECCEEEEEECCCCEEEEEEEC--C
Q ss_conf 9998599199998699889998257-72478762797-6119987288209999--799899997388819999975--9
Q 002490 418 AIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--P 491 (916)
Q Consensus 418 ~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~~~-~v~~i~~s~~g~~l~~--~d~~i~i~d~~~~~~~~~~~~--~ 491 (916)
+.|++++++++. +.|+.|++|++. +.....+..+. .+.+++|+|+|.++++ .|+.+++||+.+++.+..+.. .
T Consensus 1050 ~~~~~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1050 FRLLQDSRLLSW-SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp EEECSSSEEEEE-ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS
T ss_pred EEECCCCCEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 999089958999-7889689988898865588746688489999989999899984999489987898500125506877
Q ss_pred CEEEEEECCCCCEEEEEE-CCEEEEEECCCC
Q ss_conf 845999958998999993-895999934874
Q 002490 492 FVKYVVWSNDMESVALLS-KHAIIIASKKLV 521 (916)
Q Consensus 492 ~v~~v~~s~dg~~la~~~-~~~i~i~~~~~~ 521 (916)
.+.++.|+||++++++++ ++.|.+|+...+
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 6799999799998999828997999988999
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=451.27 Aligned_cols=480 Identities=16% Similarity=0.221 Sum_probs=379.9
Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC--CEEEEECCCCCCEEEEEEECCCCEEEEEECC----CEE
Q ss_conf 4121225787899999179998999966992999987878--2487961546598999991599999999789----849
Q 002490 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD----YKI 75 (916)
Q Consensus 2 l~~l~~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~d----g~I 75 (916)
++.|.+|...|++++|+|++++||+|+.|++|+|||+.++ .....+.+|.++|.+++|+|++++|++++.+ +.|
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 73765899865999999999689999489978994898984156676225578448999899999799998997736699
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEE
Q ss_conf 9997799915899813899889999908999-999998999299996999958999707998659999924999999997
Q 002490 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (916)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~v~~i~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 154 (916)
++|+ .++...++.+|...|.+++|+|+++ .+++++.|++|++||..++++...+.+|...|.+++|+|++++|++++
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 9963--89976325478898369998899982999992898099997999757665200257169999979999899998
Q ss_pred CCCEEEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 99919999979983000168865112114654432651125999981567873499983999989999789919999778
Q 002490 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (916)
Q Consensus 155 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~I~iwd~~ 234 (916)
.|++|++||+..++........ . ....+|...|.+++|+|++.+|++++.|++|++||+.
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~----------~----------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDD----------S----------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCT----------T----------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEECCCCCEEEEECCC----------C----------CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 9991999889998286651366----------4----------3235667878999997999999999089809999688
Q ss_pred CCCCEE-----------------------------------------EEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 986101-----------------------------------------235606888859999904999999995999299
Q 002490 235 ETKAWE-----------------------------------------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (916)
Q Consensus 235 ~~~~~~-----------------------------------------~~~~~~~~~~v~~i~~sp~~~~l~s~s~dg~i~ 273 (916)
+++... ...+.+|...|++++|+|++++|++++.|+.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEE
T ss_conf 87013440478876640689997388799995899689996889974469837888889999918999899995898499
Q ss_pred EEECCCCCEEEEE-ECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCC-----------------CEEEECCCEEEEE
Q ss_conf 9979988115775-135774899999459986999837991478853884-----------------2477439989999
Q 002490 274 VWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERER-----------------PAFAVSGDSLFYA 335 (916)
Q Consensus 274 iwd~~~~~~~~~~-~~~~~~i~~i~~sp~~~~la~g~~~~~~v~~~~~~~-----------------~~~s~~~~~l~~~ 335 (916)
+||+.++.....+ ..|...+.++++++++.++..+.++.+.+|+..... .++++++..++..
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEE
T ss_conf 99788792563216677650789998789969999848966895468854356521200148997079980799699999
Q ss_pred ECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 29859999900796033497148999888868829997489989999980799789999920898788865444545815
Q 002490 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (916)
Q Consensus 336 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~i 415 (916)
.++.+++|+. ++ ..... .. . .+.+++|+|+++.+++++ .++.+++|++......... ...|...+
T Consensus 430 ~~~~v~~~~~--~~-~~~~~---~~--~---~v~~va~spdg~~lasgs--~D~~v~lwd~~~~~~~~~~--~~~h~~~v 494 (611)
T 1nr0_A 430 CYKHIAIYSH--GK-LTEVP---IS--Y---NSSCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVK--TIVHPAEI 494 (611)
T ss_dssp ESSEEEEEET--TE-EEEEE---CS--S---CEEEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEE--EEECSSCE
T ss_pred ECCEEEEEEC--CC-EEEEE---CC--C---CCEEEEEECCCCEEEEEC--CCCEEEEEECCCCCEEEEE--CCCCCCCE
T ss_conf 6763999848--94-34640---68--8---954999928998999968--9973999994599222410--15778860
Q ss_pred EEEEEEECCCEEEEECCCCEEEEECCCC-CEEE-E--EECCC-CEEEEEEECCCEEEEE--ECCEEEEEECCCCE-EE-E
Q ss_conf 5999985991999986998899982577-2478-7--62797-6119987288209999--79989999738881-99-9
Q 002490 416 GSAIFIARNRFAVLDKSSNQVLVKNLKN-EVVK-K--SILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRL-VL-G 486 (916)
Q Consensus 416 ~~~~fs~~~~~l~~~~~d~~I~iwdl~~-~~~~-~--i~~~~-~v~~i~~s~~g~~l~~--~d~~i~i~d~~~~~-~~-~ 486 (916)
.+++|+|+++++++++.|++|++|++.+ .... . +..|. .|.+++|+|+|++|++ .|+.|++|++.++. .+ .
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCH
T ss_conf 79999899998999948998999885778722321026404664258998998997999979972999978875556326
Q ss_pred EEE---CCCEEEEEECCCCCEEEEEE-CCEEEEEECC
Q ss_conf 997---59845999958998999993-8959999348
Q 002490 487 DLQ---TPFVKYVVWSNDMESVALLS-KHAIIIASKK 519 (916)
Q Consensus 487 ~~~---~~~v~~v~~s~dg~~la~~~-~~~i~i~~~~ 519 (916)
.+. ...|..+.|+||+. |++++ +++|.+|+..
T Consensus 575 ~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred HHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 44467656711899858997-9995288778998444
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=446.30 Aligned_cols=659 Identities=17% Similarity=0.227 Sum_probs=452.6
Q ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 24879615465989999915999999997898499997799915899813899889999908999999998999299996
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg~I~iwd 121 (916)
+..+.+.+|.+.|++++|+|+++++++++.||.|++|++.+++.+.++.+|...|+++.|+|++++|++++.|+.|++|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 50004505898568999889999899994799899998999916778733899688999968999899992899499998
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 99995899970799865999992499999999799919999979983000168865112114654432651125999981
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (916)
+.+++.+..+.+|...|.+++|+|+++++++++.|++|++|++.+... ....+.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--------------------------~~~~~~ 137 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--------------------------LEQTFE 137 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE--------------------------EEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCE--------------------------EEEEEC
T ss_conf 999958799816899789999958999899992899899998999954--------------------------879983
Q ss_pred CCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCEEEEEEECC-CCCEEEEEECC--CCCEEEEEECCCCEEEEEC
Q ss_conf 5678734999839-999899997899199997789861012356068-88859999904--9999999959992999979
Q 002490 202 GHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-MNNVSCVMFHA--KQDIIVSNSEDKSIRVWDV 277 (916)
Q Consensus 202 ~~~~~v~~i~~~p-~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp--~~~~l~s~s~dg~i~iwd~ 277 (916)
+|...+.+++|+| ++..+++++.||.|++|++..... ...+..+ ...+.++.|+| ++.++++++.||.|++||+
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC--EEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 79986889999769999999994889499998999961--0698358889779999997799989999938997999999
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCEEEEEECCEEEEEECCCCCEEEEEEEC
Q ss_conf 98811577513577489999945998699983799147885388424774399899992985999990079603349714
Q 002490 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (916)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~i~~sp~~~~la~g~~~~~~v~~~~~~~~~~s~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 357 (916)
.++..+..+..|...+.+++|+|++.++++++. ++.+++|+..+++........
T Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE--------------------------DGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEECSSSSEEEEEET--------------------------TSCEEEEETTTCSEEEEECCS
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC--------------------------CCEEEEEECCCCCEEEEEECC
T ss_conf 999188998478888789998599999999908--------------------------996999989999477784068
Q ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCC-----------------------------------
Q ss_conf 899988886882999748998999998079978999992089878-----------------------------------
Q 002490 358 RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIG----------------------------------- 402 (916)
Q Consensus 358 ~~~~~~~~~~i~~i~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~----------------------------------- 402 (916)
. . .+.+++|+|++..++++.+.+ +.+.+|++......
T Consensus 270 --~--~---~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 270 --L--E---RSWCIATHPTGRKNYIASGFD-NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp --S--S---SEEEEEECTTCGGGEEEEEET-TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred --C--C---CEEEEEECCCCCCEEEEEEEC-CCEEEEECCCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCC
T ss_conf --8--8---679999924999509999907-9879997679974167779987899776366411246653046555556
Q ss_pred -----CCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCEEEEE--ECCEEE
Q ss_conf -----8865444545815599998599199998699889998257724787627976119987288209999--799899
Q 002490 403 -----RGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR--AEDRVV 475 (916)
Q Consensus 403 -----~~~~~~~~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~~v~~i~~s~~g~~l~~--~d~~i~ 475 (916)
........+...+.+++|+|+++++++++ ++.+.+|++....... ...+.++.|+|+|+++++ .++.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~---~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA---FGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE---EEECSEEEECTTSSCEEEECTTCCEE
T ss_pred CCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCCCC---CCCEEEEEEECCCCEEEEEECCCCEE
T ss_conf 7620146511788765774068999999899942-9889999874544567---99547999947998599996898399
Q ss_pred EEECCCCEEEEEEECCCEEEEEECCCC---CEEEEE-ECCEEEEEECCCCCEE-EEEEEEEEEEEEEECCCEEEEEC---
Q ss_conf 997388819999975984599995899---899999-3895999934874148-87410157788992499699976---
Q 002490 476 IFDLQQRLVLGDLQTPFVKYVVWSNDM---ESVALL-SKHAIIIASKKLVHQC-TLHETIRVKSGAWDDNGVFIYTT--- 547 (916)
Q Consensus 476 i~d~~~~~~~~~~~~~~v~~v~~s~dg---~~la~~-~~~~i~i~~~~~~~~~-~~~~~~~i~s~~w~~~~~~l~~t--- 547 (916)
+|+...+ ....+..+.|++|+ .+++++ .++.+++|+...+... .+.... ..+.|++++..+.+.
T Consensus 418 l~~~~~~------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~v~~s~dg~~la~~~~~ 489 (814)
T 3mkq_A 418 YYKNFKE------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA--KDVIWSDNGELVMIVNTN 489 (814)
T ss_dssp EEETTEE------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE--EEEEECTTSSEEEEEECC
T ss_pred EEECCCC------CCCEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCCEEEEEECCC--CEEEECCCCCEEEEEECC
T ss_conf 9977777------52439737867552365469999669989999987695999973588--879996999999999867
Q ss_pred ---CCCEEEECCC---------------------CCEEEEEEECCE---------EEEEEEECCEEEEEECCCCEEEEEE
Q ss_conf ---8924688248---------------------935799870310---------8999991888999927997599990
Q 002490 548 ---LNHIKYCLPN---------------------GDSGIIRTLDVP---------IYITKVSGNTIFCLDRDGKNRAIVI 594 (916)
Q Consensus 548 ---~~~~~~~l~~---------------------~~~~~i~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~i 594 (916)
.....|.++. .....+..+... +++.....+++.++..........+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~ 569 (814)
T 3mkq_A 490 SNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHY 569 (814)
T ss_dssp CSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEEEECCEEEEEEEC
T ss_conf 66677428999954688666664168762125022213645764278765980888999768870899969866899998
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHH-CCCCC----CCHHHHHH--HHHCCCCHHHCC-CC---C-CC--CHHHHHHHHCCCH
Q ss_conf 80378788987514588898530-05854----63058899--997798120102-44---5-82--2123565412999
Q 002490 595 DATEYIFKLSLLRKRYDHVMSMI-RNSQL----CGQAMIAY--LQQKGFPEVALH-FV---K-DE--RTRFNLALESGNI 660 (916)
Q Consensus 595 d~~~~~f~~al~~~~~~~~~~~~-~~~~~----~~~~i~~~--l~~~~~~e~al~-~~---~-~~--~~~f~la~~~g~~ 660 (916)
+...+.... ...++ -+.++ +.... .....+.| .-..+..+.|++ +. + .. .....+..+.|.+
T Consensus 570 ~~~~~~~~~-~~~~~---~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~ 645 (814)
T 3mkq_A 570 TKEMYLLGY-LARDN---KVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYY 645 (814)
T ss_dssp SSCCEEEEE-EGGGT---EEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCEEEEEE-EECCC---EEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 966799999-83299---99999288887999989099999699870799999988874288467899999999868986
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH----------------HHHCCCCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999998099778999999999858933788998----------------8513855025578662899999999999
Q 002490 661 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAY----------------QRTKNFERLSFLYLITGNMDKLSKMLKI 724 (916)
Q Consensus 661 ~~A~~~a~~~~~~~~w~~la~~al~~g~~~~Ae~~y----------------~~~~~~~~l~~l~~~~g~~~~l~~~~~~ 724 (916)
+.|++.++ ++ ..-.+.|+..|+++.|.++. .+.++++.+..+|...++.+++..+..+
T Consensus 646 ~~a~~~~~---~~---~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~ 719 (814)
T 3mkq_A 646 EEALNISP---DQ---DQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS 719 (814)
T ss_dssp HHHHHHCC---CH---HHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHEECCC---CC---CHHEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89605278---93---1425021450999999999986176768999999999849989999999870271355899877
Q ss_pred HHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 998298046788998528998999999985994688999995099389999998819999
Q 002490 725 AEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 784 (916)
Q Consensus 725 ~~~~~~~~~~~~~~~~~g~~~ea~~~~~~~g~~~~A~~~a~~~g~~~~a~~~~~~~~~~~ 784 (916)
...........+.+...|+++.|..+|.++|++++|..|++..++|++|..++++.++.+
T Consensus 720 ~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 720 FNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf 299999999999999858667999999880999999999998699478999998709975
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=443.74 Aligned_cols=529 Identities=23% Similarity=0.319 Sum_probs=410.1
Q ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 24879615465989999915999999997898499997799915899813899889999908999999998999299996
Q 002490 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (916)
Q Consensus 42 ~~~~~~~~h~~~V~~i~fsp~~~~lvs~~~dg~I~vWd~~~~~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~dg~I~iwd 121 (916)
+..++|++|.++|++++|+|++++|++++.|+.|++||. +++++.++.+|...|++++|+|++++|++++.|++|++||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 894398789985799999899899999938998999979-9978999968989989999989999999996989799998
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCEECCCCCCCEE---ECC----------CCCCC
Q ss_conf 99995899970799865999992499999999799919999979983000168865112---114----------65443
Q 002490 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR---LSQ----------MNTDL 188 (916)
Q Consensus 122 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~----------~~~~~ 188 (916)
. +++++..+.+|...|.+++|+|+++++++++.|+.+++|+................. ... .....
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEE
T ss_conf 9-997899997899988999998999989998079833520235520011047777435554203776320025553100
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 26511259999815678734999839999899997899199997789861012356068888599999049999999959
Q 002490 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE 268 (916)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~dg~I~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~l~s~s~ 268 (916)
..............+...+.++.++|+++++++++.|+.|++|+..... +..+.+|...|.+++|+|+++++++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~---~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 241 (577)
T 2ymu_A 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVRGVAFSPDGQTIASASD 241 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCE---EEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCE---EEEEECCCCCEEEEEECCCCCEEEEEEC
T ss_conf 0000000000026877635665416997789998599989999499968---9999468898899999799999999918
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC-CCEEEEECCCCC-------------EEEECCCEEEE
Q ss_conf 9929999799881157751357748999994599869998379-914788538842-------------47743998999
Q 002490 269 DKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS-GMIVFKLERERP-------------AFAVSGDSLFY 334 (916)
Q Consensus 269 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~~~~la~g~~~-~~~v~~~~~~~~-------------~~s~~~~~l~~ 334 (916)
|+.|++|+. +++.+..+..+...+.+++|+|++..+++++.+ .+.+|+...... ++++++..+++
T Consensus 242 d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 242 DKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 998999959-9979999806889879999968999999995999799994899589997068897699999999999999
Q ss_pred E-ECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 9-298599999007960334971489998888688299974899899999807997899999208987888654445458
Q 002490 335 A-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKG 413 (916)
Q Consensus 335 ~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~llv~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 413 (916)
+ .++.+++|+....... .+. ++.. .+.+++|+|+++.+++++ .++.+++|+.... .......|..
T Consensus 321 ~~~d~~i~~w~~~~~~~~---~~~--~~~~---~v~~~~~s~~g~~l~~~~--~dg~v~~~~~~~~----~~~~~~~~~~ 386 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQHLQ---TLT--GHSS---SVWGVAFSPDGQTIASAS--DDKTVKLWNRNGQ----LLQTLTGHSS 386 (577)
T ss_dssp EETTSCEEEEETTSCEEE---EEC--CCSS---CEEEEEECTTSSEEEEEE--TTSEEEEEETTCC----EEEEEECCSS
T ss_pred EECCCEEEEEECCCCEEE---EEE--CCCC---CEEEEEECCCCCEEEEEE--CCCEEEEECCCCC----EEEEECCCCC
T ss_conf 969995999969997257---874--7889---779999989999999996--9998999908997----8998527889
Q ss_pred CEEEEEEEECCCEEEEECCCCEEEEECCCCCEEEEEECCC-CEEEEEEECCCEEEEE--ECCEEEEEECCCCEEEEEEE-
Q ss_conf 1559999859919999869988999825772478762797-6119987288209999--79989999738881999997-
Q 002490 414 LGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQ- 489 (916)
Q Consensus 414 ~i~~~~fs~~~~~l~~~~~d~~I~iwdl~~~~~~~i~~~~-~v~~i~~s~~g~~l~~--~d~~i~i~d~~~~~~~~~~~- 489 (916)
.+.+++|+|+++++++++.|+.|++|+..++....+..+. .+.++.|+|+++++++ .|+.+++|+. +++.+..+.
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~ 465 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG 465 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEECC
T ss_conf 748999989999999994999899996999789896288997579999899999999939998999979-9988999727
Q ss_pred -CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEEE-EEEEEEEEEECCCEEEEECCCCEEEECCCCCEEEEEEE
Q ss_conf -59845999958998999993-8959999348741488741-01577889924996999768924688248935799870
Q 002490 490 -TPFVKYVVWSNDMESVALLS-KHAIIIASKKLVHQCTLHE-TIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTL 566 (916)
Q Consensus 490 -~~~v~~v~~s~dg~~la~~~-~~~i~i~~~~~~~~~~~~~-~~~i~s~~w~~~~~~l~~t~~~~~~~l~~~~~~~i~~~ 566 (916)
...+..++|+||+++|++++ +..|++|+.....+..+.. ...|.+++|++++.+|.+....-...+++-....+..+
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~ 545 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 545 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 89977899996999999999198979999399978999867999989999918999999998969999996999789897
Q ss_pred ---CCEEEEEEE--ECCEEEEEECCCCEEE
Q ss_conf ---310899999--1888999927997599
Q 002490 567 ---DVPIYITKV--SGNTIFCLDRDGKNRA 591 (916)
Q Consensus 567 ---~~~~~~~~~--~~~~l~~~~~~~~~~~ 591 (916)
..++.-+.+ .+..+.....++.++.
T Consensus 546 ~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 546 TGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 188888789999689999999908999999
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=411.42 Aligned_cols=487 Identities=15% Similarity=0.185 Sum_probs=356.2
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC----CEEEEECCCCCC-EEEEEEEC--CCCEEEEEECCCEEEEE
Q ss_conf 225787899999179998999966992999987878----248796154659-89999915--99999999789849999
Q 002490 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGP-VRGVHFHK--SQPLFVSGGDDYKIKVW 78 (916)
Q Consensus 6 ~~h~~~V~~i~~sp~~~~la~~~~dg~I~iwd~~~~----~~~~~~~~h~~~-V~~i~fsp--~~~~lvs~~~dg~I~vW 78 (916)
..|.+.|++++|+|++++|++++ ++.|.+|++.++ +....+.+|.+. |++++|+| ++++|++++.|+.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 77658536899889999799935-98499997778877651431880578844999997967899889996489879997
Q ss_pred ECCCC--------EEEEEEECCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 77999--------1589981389988999990899999999899----92999969999589997079986599999249
Q 002490 79 NYKMH--------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146 (916)
Q Consensus 79 d~~~~--------~~~~~l~~h~~~v~~i~fs~~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~~h~~~v~~~~~~p~ 146 (916)
++.++ +....+..|...|.+++|+|+++++++++.+ +.|++|+ .++.+..+.+|...|.++.|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred ECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCCCEEEEEECCC
T ss_conf 6888765544554200011125663799999079998999316877755799997--89810313067743889998878
Q ss_pred CC-EEEEEECCCEEEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCC---CEEEEEECCC-CCEEEE
Q ss_conf 99-999997999199999799830001688651121146544326511259999815678---7349998399-998999
Q 002490 147 ED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR---GVNWAAFHPT-LPLIVS 221 (916)
Q Consensus 147 ~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~p~-~~~l~~ 221 (916)
++ .+++++.|+.|++||+...+. ...+.+|.. .+.+++|+|+ ++++++
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKF---------------------------SASDRTHHKQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEE---------------------------EEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCE---------------------------EEEECCCCCCCCEEEEEEECCCCCCEEEE
T ss_conf 996899995799599996999610---------------------------13202567777428999978977888999
Q ss_pred EECCCCEEEEECCCCCCEEEEEE-E---CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECC----CCCE
Q ss_conf 97899199997789861012356-0---68888599999049999999959992999979988115775135----7748
Q 002490 222 GADDRQVKLWRMNETKAWEVDTL-R---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE----HDRF 293 (916)
Q Consensus 222 ~~~dg~I~iwd~~~~~~~~~~~~-~---~~~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~i 293 (916)
++.|+.|++||+.+++. +..+ . .|...|.++.|+ ++.++++++.|+.|++||+.+++.+..+..+ ...+
T Consensus 225 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EETTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EECCCEEEEEECCCCCE--EEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCE
T ss_conf 86898089998999978--589525444567755899981-899799984899489997888927878847877545714
Q ss_pred EEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEC-----------CCEEEEE-ECCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 9999945998699983-7991478853884247743-----------9989999-2985999990079603349714899
Q 002490 294 WILASHPEMNLLAAGH-DSGMIVFKLERERPAFAVS-----------GDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPG 360 (916)
Q Consensus 294 ~~i~~sp~~~~la~g~-~~~~~v~~~~~~~~~~s~~-----------~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 360 (916)
..+.+. ++..+++++ ++.+.+|++....+..... ++ ++++ .++.+++|++. .+. .+
T Consensus 302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-l~~~~~dg~i~~w~~~------~~~---~~ 370 (615)
T 1pgu_A 302 VGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-LISGSYDGRIMEWSSS------SMH---QD 370 (615)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT-TEEEETTSCEEETTTT------EEE---CC
T ss_pred EEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECC-CEEECCCCEEEEEECH------HHC---CC
T ss_conf 699918-997699997899789998889928899947778789999567-4898799959998752------415---75
Q ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCC-------------------------------CCCCCCCC
Q ss_conf 98888688299974899899999807997899999208987-------------------------------88865444
Q 002490 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-------------------------------GRGDSVQD 409 (916)
Q Consensus 361 ~~~~~~~i~~i~~sp~~~~llv~~~~~~g~i~i~~~~~~~~-------------------------------~~~~~~~~ 409 (916)
+.. .+.+++| +++..+++++ .++.+.+|++..... +... ...
T Consensus 371 ~~~---~v~~~~~-~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 443 (615)
T 1pgu_A 371 HSN---LIVSLDN-SKAQEYSSIS--WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII-KSV 443 (615)
T ss_dssp CCS---CEEEEEC-CSTTCCEEEE--TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred CCC---CEEEEEE-CCCCEEEEEE--CCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEE-EEC
T ss_conf 568---5179997-8986799995--89979998866676367846999828987899967982699944678665-551
Q ss_pred CCCCCEEEEEEEECCCEEEEECC-CCEEEEECCCCCEE--EEEECCC-CEEEEEEECCCEEEEE--ECCEEEEEECCCCE
Q ss_conf 54581559999859919999869-98899982577247--8762797-6119987288209999--79989999738881
Q 002490 410 AKKGLGGSAIFIARNRFAVLDKS-SNQVLVKNLKNEVV--KKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRL 483 (916)
Q Consensus 410 ~~~~~i~~~~fs~~~~~l~~~~~-d~~I~iwdl~~~~~--~~i~~~~-~v~~i~~s~~g~~l~~--~d~~i~i~d~~~~~ 483 (916)
.+...+.+++|+ ++++++++. ++.|++|++.+... ..+..+. .+.++.|+|+|++|++ .++.|++|++.+++
T Consensus 444 ~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 444 RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCC
T ss_conf 567872077883--888999656898699998888543533367765750799998999989981799859986577776
Q ss_pred EEEEEE---CCCEEEEEECC----------CCCEEEEEE-CCEEEEEECCCC-C-EEEEEE-EEEEEEEEEECCCEEEEE
Q ss_conf 999997---59845999958----------998999993-895999934874-1-488741-015778899249969997
Q 002490 484 VLGDLQ---TPFVKYVVWSN----------DMESVALLS-KHAIIIASKKLV-H-QCTLHE-TIRVKSGAWDDNGVFIYT 546 (916)
Q Consensus 484 ~~~~~~---~~~v~~v~~s~----------dg~~la~~~-~~~i~i~~~~~~-~-~~~~~~-~~~i~s~~w~~~~~~l~~ 546 (916)
.+..+. ...+..+.|+| ++++|++++ ++.|++|+.... . +..+.. ...|.+++|++++. +.+
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEE
T ss_pred CEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCCCC-EEE
T ss_conf 2467604788714699976832345332468888999817971999977888540311335943058999738997-288
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=409.68 Aligned_cols=469 Identities=13% Similarity=0.226 Sum_probs=371.5
Q ss_pred CCCCCCCCCC-EEEEEEEC--CCCEEEEEECCCEEEEEECCCC--------CEEEEECCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 4121225787-89999917--9998999966992999987878--------24879615465989999915999999997
Q 002490 2 LTKFETKSNR-VKGLSFHS--KRPWILASLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVHFHKSQPLFVSGG 70 (916)
Q Consensus 2 l~~l~~h~~~-V~~i~~sp--~~~~la~~~~dg~I~iwd~~~~--------~~~~~~~~h~~~V~~i~fsp~~~~lvs~~ 70 (916)
+..+.+|... |++++|+| ++++|++++.||.|++||+.++ +....+..|..+|.+++|+|+++++++++
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEEC
T ss_conf 31880578844999997967899889996489879997688876554455420001112566379999907999899931
Q ss_pred CC----CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEEEECCCC---CEEEEE
Q ss_conf 89----8499997799915899813899889999908999-999998999299996999958999707998---659999
Q 002490 71 DD----YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNH---YVMCAS 142 (916)
Q Consensus 71 ~d----g~I~vWd~~~~~~~~~l~~h~~~v~~i~fs~~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~---~v~~~~ 142 (916)
.+ +.|.+|+ .++.+..+.+|...|.++.|+|+++ .+++++.|+.|++||..+++++..+.+|.. .|.+++
T Consensus 136 ~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 136 EGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp CCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred CCCCCCCEEEEEE--CCCCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEE
T ss_conf 6877755799997--89810313067743889998878996899995799599996999610132025677774289999
Q ss_pred EECC-CCEEEEEECCCEEEEEECCCCCCEECCCCCCCEEECCCCCCCCCCCCCEEEEEE-E---CCCCCEEEEEECCCCC
Q ss_conf 9249-999999979991999997998300016886511211465443265112599998-1---5678734999839999
Q 002490 143 FHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-E---GHDRGVNWAAFHPTLP 217 (916)
Q Consensus 143 ~~p~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~i~~~p~~~ 217 (916)
|+|+ ++++++++.|+.|++||+.+++... .+ . .|...+.+++|+ ++.
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---------------------------~~~~~~~~~~~~v~~~~~~-~~~ 265 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLK---------------------------YIEDDQEPVQGGIFALSWL-DSQ 265 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEE---------------------------ECCBTTBCCCSCEEEEEES-SSS
T ss_pred ECCCCCCEEEEEECCCEEEEEECCCCCEEE---------------------------EECCCCCCCCCCEEEEEEC-CCC
T ss_conf 789778889998689808999899997858---------------------------9525444567755899981-899
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEEEEECC----CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf 899997899199997789861012356068----8885999990499999999599929999799881157751357748
Q 002490 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGH----MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (916)
Q Consensus 218 ~l~~~~~dg~I~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 293 (916)
++++++.|+.|++|++.+++. +..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+..+..|...+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEEEECCCCCEEEEECCCCCE--EEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCE
T ss_conf 799984899489997888927--878847877545714699918-99769999789978999888992889994777878
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEEC-----CCCC--EEE-ECCCEEEEE-ECCEEEEEE--------------------
Q ss_conf 99999459986999837991478853-----8842--477-439989999-298599999--------------------
Q 002490 294 WILASHPEMNLLAAGHDSGMIVFKLE-----RERP--AFA-VSGDSLFYA-KDRFLRYYE-------------------- 344 (916)
Q Consensus 294 ~~i~~sp~~~~la~g~~~~~~v~~~~-----~~~~--~~s-~~~~~l~~~-~d~~i~i~d-------------------- 344 (916)
.++++ |+ ++..+.++.+.+|++. ...+ .+. ..++.++++ .++.+++|+
T Consensus 343 ~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~ 419 (615)
T 1pgu_A 343 TALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419 (615)
T ss_dssp EEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred EEEEE-CC--CEEECCCCEEEEEECHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCC
T ss_conf 99995-67--4898799959998752415755685179997898679999589979998866676367846999828987
Q ss_pred --------------CCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCC-CCEEEEEEEECCCCCCCCCCCC
Q ss_conf --------------0079603349714899988886882999748998999998079-9789999920898788865444
Q 002490 345 --------------FSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD-GGSYELYVIPKDSIGRGDSVQD 409 (916)
Q Consensus 345 --------------~~~~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~llv~~~~~-~g~i~i~~~~~~~~~~~~~~~~ 409 (916)
..+++....... ...+.+++|+ ++.+++++ . ++.+++|++....... ....
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~l~~~~--~~d~~i~~~~~~~~~~~~--~~~~ 485 (615)
T 1pgu_A 420 TAVLTNDDDLLILQSFTGDIIKSVRL--------NSPGSAVSLS--QNYVAVGL--EEGNTIQVFKLSDLEVSF--DLKT 485 (615)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC--------SSCEEEEEEC--SSEEEEEE--TTTSCEEEEETTEEEEEE--ECSS
T ss_pred EEEEECCCCEEEEECCCCCEEEECCC--------CCCCEEEEEC--CCEEEEEE--CCCCEEEEEECCCCCCCC--CCCC
T ss_conf 89996798269994467866555156--------7872077883--88899965--689869999888854353--3367
Q ss_pred CCCCCEEEEEEEECCCEEEEECCCCEEEEECCC-CCEEEEEEC-CC-CEEEEEEEC----------CCEEEEE--ECCEE
Q ss_conf 545815599998599199998699889998257-724787627-97-611998728----------8209999--79989
Q 002490 410 AKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSIL-PI-AADAIFYAG----------TGNLLCR--AEDRV 474 (916)
Q Consensus 410 ~~~~~i~~~~fs~~~~~l~~~~~d~~I~iwdl~-~~~~~~i~~-~~-~v~~i~~s~----------~g~~l~~--~d~~i 474 (916)
.|...+.+++|+|+++++++++.|+.|++|++. ++....+.. +. .|.++.|+| ++.+|++ .|+.|
T Consensus 486 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i 565 (615)
T 1pgu_A 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 565 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred CCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCE
T ss_conf 76575079999899998998179985998657777624676047887146999768323453324688889998179719
Q ss_pred EEEECCCC-EEEEEEE--CCCEEEEEECCCCCEEEEEE-CCEEEEEECCCC
Q ss_conf 99973888-1999997--59845999958998999993-895999934874
Q 002490 475 VIFDLQQR-LVLGDLQ--TPFVKYVVWSNDMESVALLS-KHAIIIASKKLV 521 (916)
Q Consensus 475 ~i~d~~~~-~~~~~~~--~~~v~~v~~s~dg~~la~~~-~~~i~i~~~~~~ 521 (916)
++|++.++ +.+..+. ...|..+.|++|+. |++++ ++.+.+|+.+.+
T Consensus 566 ~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 566 FIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp EEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred EEEECCCCCEECHHHHCCCCCEEEEEECCCCC-EEEECCCCEEEEEEEECC
T ss_conf 99977888540311335943058999738997-288459963999960159
Done!