Query 002491
Match_columns 916
No_of_seqs 451 out of 2866
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09496 trkA potassium transp 100.0 1.8E-36 3.9E-41 352.7 40.7 426 383-916 1-438 (453)
2 KOG1420 Ca2+-activated K+ chan 100.0 4.5E-37 9.8E-42 338.8 17.5 601 289-915 251-1065(1103)
3 PRK10537 voltage-gated potassi 100.0 1.8E-29 4E-34 286.2 21.2 232 292-549 141-382 (393)
4 PF06241 DUF1012: Protein of u 99.9 9.6E-25 2.1E-29 213.1 16.5 200 461-669 1-200 (206)
5 COG0569 TrkA K+ transport syst 99.9 2.4E-22 5.1E-27 213.0 19.3 214 383-621 1-216 (225)
6 KOG3193 K+ channel subunit [In 99.9 1.8E-21 4E-26 214.9 24.5 319 285-616 184-546 (1087)
7 PRK09496 trkA potassium transp 99.8 1.2E-19 2.5E-24 211.7 24.0 213 380-621 229-444 (453)
8 PRK10669 putative cation:proto 99.7 3E-16 6.5E-21 187.9 19.3 141 381-545 416-556 (558)
9 PRK03659 glutathione-regulated 99.6 8.1E-15 1.7E-19 176.6 20.2 133 381-537 399-531 (601)
10 PF02254 TrkA_N: TrkA-N domain 99.6 6.3E-15 1.4E-19 139.7 13.0 116 385-524 1-116 (116)
11 COG0569 TrkA K+ transport syst 99.6 3.5E-14 7.7E-19 150.7 20.1 208 644-915 2-210 (225)
12 PRK03562 glutathione-regulated 99.6 3.5E-14 7.5E-19 171.5 20.9 133 381-537 399-531 (621)
13 PRK10537 voltage-gated potassi 99.5 3E-13 6.6E-18 154.2 12.8 142 642-841 240-382 (393)
14 PF06241 DUF1012: Protein of u 99.4 2E-12 4.2E-17 127.4 15.3 150 722-915 1-150 (206)
15 PF02254 TrkA_N: TrkA-N domain 99.4 5E-12 1.1E-16 119.8 12.0 114 645-814 1-114 (116)
16 PRK10669 putative cation:proto 99.2 4.3E-11 9.2E-16 143.7 13.9 141 640-836 415-555 (558)
17 PRK03659 glutathione-regulated 99.1 4.2E-10 9.1E-15 136.0 14.7 128 641-825 399-527 (601)
18 PRK03562 glutathione-regulated 99.1 1.1E-09 2.5E-14 132.6 14.4 127 642-825 400-527 (621)
19 PF07885 Ion_trans_2: Ion chan 99.0 6.2E-10 1.3E-14 98.7 5.5 72 295-366 3-78 (79)
20 COG1226 Kch Kef-type K+ transp 98.8 6.8E-08 1.5E-12 98.9 14.8 144 378-545 17-161 (212)
21 KOG3713 Voltage-gated K+ chann 98.6 3.2E-08 7E-13 112.3 4.9 79 289-368 347-433 (477)
22 KOG1545 Voltage-gated shaker-l 98.5 2E-08 4.3E-13 108.7 0.8 78 289-366 363-447 (507)
23 KOG1419 Voltage-gated K+ chann 98.4 1.8E-07 3.8E-12 106.5 3.2 79 293-371 238-328 (654)
24 PLN03192 Voltage-dependent pot 98.3 1.3E-06 2.9E-11 109.8 7.9 81 287-367 201-305 (823)
25 COG0490 Putative regulatory, l 98.2 2.6E-06 5.7E-11 84.2 7.5 97 522-621 52-153 (162)
26 KOG4404 Tandem pore domain K+ 98.2 1.1E-06 2.3E-11 94.9 4.6 85 283-367 156-249 (350)
27 KOG1420 Ca2+-activated K+ chan 98.1 3.4E-06 7.4E-11 95.8 6.7 234 640-914 355-617 (1103)
28 COG1226 Kch Kef-type K+ transp 98.1 3.2E-05 7E-10 79.0 13.5 143 639-837 18-161 (212)
29 COG3400 Uncharacterized protei 97.9 0.00028 6E-09 77.2 14.7 211 383-621 2-215 (471)
30 PF02080 TrkA_C: TrkA-C domain 97.8 1.7E-05 3.6E-10 68.4 4.0 62 555-620 3-65 (71)
31 KOG3193 K+ channel subunit [In 97.8 0.00027 5.9E-09 80.4 13.3 230 641-913 286-543 (1087)
32 KOG4390 Voltage-gated A-type K 97.6 5.1E-06 1.1E-10 90.9 -3.1 93 271-367 312-411 (632)
33 PF01007 IRK: Inward rectifier 97.5 0.0001 2.2E-09 82.9 5.8 105 283-391 32-161 (336)
34 KOG0498 K+-channel ERG and rel 97.1 0.00028 6E-09 85.8 3.2 55 314-368 295-350 (727)
35 PF03493 BK_channel_a: Calcium 97.0 0.0021 4.5E-08 60.0 7.7 70 514-585 8-101 (101)
36 KOG1418 Tandem pore domain K+ 97.0 0.00042 9E-09 79.7 3.3 62 311-372 113-175 (433)
37 KOG3684 Ca2+-activated K+ chan 97.0 0.01 2.2E-07 67.6 13.8 74 292-365 258-340 (489)
38 KOG4404 Tandem pore domain K+ 96.8 0.0014 3E-08 71.5 4.8 116 223-361 6-129 (350)
39 COG3273 Uncharacterized conser 96.7 0.0018 3.9E-08 65.4 4.9 63 556-621 123-186 (204)
40 KOG1418 Tandem pore domain K+ 96.7 0.00016 3.6E-09 83.1 -3.6 68 291-358 220-296 (433)
41 KOG0501 K+-channel KCNQ [Inorg 96.2 0.0053 1.1E-07 71.0 5.2 55 314-368 424-479 (971)
42 PRK06719 precorrin-2 dehydroge 96.1 0.018 3.9E-07 58.1 7.8 83 641-754 12-94 (157)
43 COG0490 Putative regulatory, l 96.1 0.013 2.9E-07 58.4 6.6 49 861-915 99-147 (162)
44 PRK06719 precorrin-2 dehydroge 96.1 0.03 6.4E-07 56.5 9.3 83 381-490 12-94 (157)
45 KOG0499 Cyclic nucleotide-gate 94.9 0.022 4.8E-07 66.4 4.0 94 275-368 350-458 (815)
46 KOG0500 Cyclic nucleotide-gate 94.4 0.049 1.1E-06 62.7 5.0 55 314-368 184-238 (536)
47 COG3400 Uncharacterized protei 94.1 1.4 3.1E-05 49.2 15.2 205 643-915 2-209 (471)
48 PRK06718 precorrin-2 dehydroge 93.6 0.31 6.8E-06 51.2 8.9 83 382-489 10-93 (202)
49 TIGR03802 Asp_Ala_antiprt aspa 93.5 0.086 1.9E-06 63.8 5.1 63 555-621 221-284 (562)
50 PRK05326 potassium/proton anti 93.1 0.12 2.6E-06 62.7 5.7 62 555-621 418-479 (562)
51 TIGR01470 cysG_Nterm siroheme 93.1 0.64 1.4E-05 49.0 10.3 71 642-731 9-79 (205)
52 PRK06718 precorrin-2 dehydroge 92.6 0.52 1.1E-05 49.5 8.9 71 642-731 10-80 (202)
53 PRK04972 putative transporter; 92.1 0.18 3.9E-06 61.0 5.3 63 555-621 305-367 (558)
54 KOG3827 Inward rectifier K+ ch 91.9 0.12 2.5E-06 58.2 3.1 76 312-391 111-189 (400)
55 TIGR01470 cysG_Nterm siroheme 91.9 1.8 3.9E-05 45.7 11.8 85 382-491 9-94 (205)
56 PF02080 TrkA_C: TrkA-C domain 91.8 0.2 4.3E-06 42.9 3.8 48 861-915 13-60 (71)
57 TIGR03802 Asp_Ala_antiprt aspa 91.6 0.24 5.2E-06 60.0 5.6 64 554-621 304-372 (562)
58 PRK03818 putative transporter; 91.5 0.25 5.5E-06 59.7 5.6 63 555-621 292-355 (552)
59 PF03435 Saccharop_dh: Sacchar 90.8 1.3 2.8E-05 51.0 10.4 76 385-470 1-77 (386)
60 PF00520 Ion_trans: Ion transp 90.2 0.55 1.2E-05 47.5 5.9 50 312-361 144-200 (200)
61 COG3273 Uncharacterized conser 89.9 0.37 8E-06 49.2 4.1 49 861-915 132-180 (204)
62 PRK03818 putative transporter; 89.7 0.53 1.1E-05 57.0 6.2 63 554-621 207-270 (552)
63 COG1748 LYS9 Saccharopine dehy 89.6 4 8.7E-05 47.1 12.8 130 383-547 2-135 (389)
64 PRK12475 thiamine/molybdopteri 89.6 3.7 8.1E-05 46.7 12.5 98 381-491 23-141 (338)
65 PRK05562 precorrin-2 dehydroge 88.5 5.9 0.00013 42.3 12.3 85 382-491 25-110 (223)
66 PF13460 NAD_binding_10: NADH( 88.4 4.6 0.0001 40.8 11.2 69 385-470 1-70 (183)
67 PRK04972 putative transporter; 87.1 1 2.3E-05 54.5 6.4 54 564-621 228-282 (558)
68 COG3263 NhaP-type Na+/H+ and K 86.5 0.69 1.5E-05 53.1 4.0 55 561-620 422-476 (574)
69 PF05368 NmrA: NmrA-like famil 85.8 1.9 4E-05 45.7 6.9 73 645-731 1-74 (233)
70 PF13460 NAD_binding_10: NADH( 84.8 3.1 6.8E-05 42.0 7.7 69 645-731 1-70 (183)
71 CHL00194 ycf39 Ycf39; Provisio 83.5 7.5 0.00016 43.3 10.7 72 383-469 1-73 (317)
72 PRK05562 precorrin-2 dehydroge 83.4 5.6 0.00012 42.5 9.0 72 641-731 24-95 (223)
73 PF03493 BK_channel_a: Calcium 83.4 6.6 0.00014 36.6 8.5 72 809-883 9-101 (101)
74 COG1648 CysG Siroheme synthase 82.5 6.7 0.00015 41.6 9.1 86 382-491 12-97 (210)
75 PLN02819 lysine-ketoglutarate 82.1 7.8 0.00017 50.2 11.1 103 382-502 569-679 (1042)
76 PF00670 AdoHcyase_NAD: S-aden 81.7 3.7 8.1E-05 41.6 6.5 66 382-470 23-88 (162)
77 PF03435 Saccharop_dh: Sacchar 81.0 3.2 6.9E-05 47.8 6.6 75 645-730 1-76 (386)
78 PRK07688 thiamine/molybdopteri 80.2 20 0.00043 40.8 12.6 98 381-491 23-141 (339)
79 COG0300 DltE Short-chain dehyd 79.7 6.4 0.00014 43.2 8.0 71 381-458 5-76 (265)
80 PRK06914 short chain dehydroge 79.4 7.8 0.00017 42.0 8.8 82 383-470 4-91 (280)
81 PF05368 NmrA: NmrA-like famil 78.9 14 0.0003 39.0 10.3 71 385-470 1-74 (233)
82 cd01075 NAD_bind_Leu_Phe_Val_D 78.9 12 0.00025 39.3 9.5 102 383-517 29-134 (200)
83 cd05211 NAD_bind_Glu_Leu_Phe_V 78.3 9.2 0.0002 40.7 8.6 116 381-528 22-152 (217)
84 PF13241 NAD_binding_7: Putati 78.1 13 0.00029 34.4 8.6 79 382-491 7-85 (103)
85 COG1748 LYS9 Saccharopine dehy 77.4 5.7 0.00012 45.9 7.1 77 643-732 2-79 (389)
86 TIGR00933 2a38 potassium uptak 77.2 8.3 0.00018 44.7 8.6 41 310-350 345-389 (390)
87 PLN00141 Tic62-NAD(P)-related 77.2 10 0.00022 40.7 8.7 77 382-470 17-95 (251)
88 PLN03223 Polycystin cation cha 76.9 15 0.00032 48.1 10.8 55 312-368 1360-1425(1634)
89 CHL00194 ycf39 Ycf39; Provisio 76.6 12 0.00027 41.6 9.5 71 644-730 2-73 (317)
90 TIGR00934 2a38euk potassium up 76.6 8.4 0.00018 48.0 8.5 61 291-352 587-661 (800)
91 PF01488 Shikimate_DH: Shikima 76.4 10 0.00022 37.1 7.7 75 381-470 11-85 (135)
92 PRK09186 flagellin modificatio 76.3 10 0.00022 40.3 8.4 69 382-456 4-73 (256)
93 cd05213 NAD_bind_Glutamyl_tRNA 76.2 15 0.00032 41.2 10.0 102 382-509 178-279 (311)
94 PF01408 GFO_IDH_MocA: Oxidore 75.1 28 0.0006 32.5 10.1 71 384-470 2-72 (120)
95 COG0168 TrkG Trk-type K+ trans 74.6 16 0.00035 43.8 10.2 74 286-359 397-480 (499)
96 PRK04148 hypothetical protein; 74.6 4.9 0.00011 39.5 4.8 70 383-470 18-87 (134)
97 PRK12475 thiamine/molybdopteri 74.5 20 0.00044 40.7 10.6 79 641-730 23-125 (338)
98 PLN02819 lysine-ketoglutarate 73.9 7.5 0.00016 50.4 7.6 79 640-731 567-658 (1042)
99 PRK08251 short chain dehydroge 73.7 13 0.00029 39.3 8.4 81 383-469 3-90 (248)
100 PLN03209 translocon at the inn 73.1 17 0.00038 44.1 9.9 83 381-470 79-169 (576)
101 PRK09291 short chain dehydroge 72.9 19 0.00042 38.2 9.5 79 383-469 3-82 (257)
102 PRK06522 2-dehydropantoate 2-r 72.4 32 0.0007 37.8 11.4 72 383-470 1-76 (304)
103 PRK08267 short chain dehydroge 72.4 17 0.00037 38.8 9.0 78 643-731 2-87 (260)
104 PRK00536 speE spermidine synth 72.1 31 0.00068 37.8 10.8 100 381-505 72-174 (262)
105 PRK06194 hypothetical protein; 72.1 13 0.00029 40.3 8.2 80 383-470 7-93 (287)
106 PRK08309 short chain dehydroge 71.8 17 0.00037 37.4 8.3 65 383-456 1-65 (177)
107 PRK06940 short chain dehydroge 71.4 14 0.0003 40.3 8.1 65 382-455 2-66 (275)
108 PRK08267 short chain dehydroge 71.1 15 0.00033 39.2 8.3 78 383-470 2-87 (260)
109 PRK10637 cysG siroheme synthas 70.9 34 0.00073 40.6 11.7 86 381-491 11-97 (457)
110 PRK07024 short chain dehydroge 70.6 16 0.00034 39.1 8.2 79 382-469 2-87 (257)
111 cd01078 NAD_bind_H4MPT_DH NADP 70.4 21 0.00045 36.9 8.8 79 382-470 28-107 (194)
112 PF01488 Shikimate_DH: Shikima 70.3 6.5 0.00014 38.4 4.7 73 641-730 11-84 (135)
113 PF00899 ThiF: ThiF family; I 70.0 53 0.0011 31.8 11.0 35 382-421 2-36 (135)
114 PRK08265 short chain dehydroge 70.0 17 0.00037 39.1 8.3 76 382-468 6-88 (261)
115 PRK07326 short chain dehydroge 69.9 18 0.00039 37.9 8.3 79 382-469 6-91 (237)
116 cd01065 NAD_bind_Shikimate_DH 69.7 17 0.00037 35.7 7.6 73 382-470 19-91 (155)
117 PRK06949 short chain dehydroge 69.6 22 0.00048 37.8 9.0 81 381-469 8-95 (258)
118 PRK07231 fabG 3-ketoacyl-(acyl 69.5 18 0.00038 38.2 8.2 79 383-470 6-91 (251)
119 PRK07454 short chain dehydroge 69.5 20 0.00044 37.7 8.6 79 383-469 7-92 (241)
120 PRK07831 short chain dehydroge 69.4 18 0.00039 38.8 8.3 68 382-455 17-86 (262)
121 PF00106 adh_short: short chai 69.4 16 0.00035 35.9 7.5 81 383-470 1-90 (167)
122 PRK06138 short chain dehydroge 69.4 19 0.00041 38.1 8.4 80 382-470 5-91 (252)
123 PLN03209 translocon at the inn 68.9 15 0.00032 44.7 8.0 86 640-731 78-169 (576)
124 PRK10538 malonic semialdehyde 68.7 19 0.0004 38.3 8.2 76 383-469 1-83 (248)
125 PRK07063 short chain dehydroge 68.7 20 0.00043 38.3 8.5 81 383-469 8-95 (260)
126 PLN02366 spermidine synthase 68.5 45 0.00097 37.5 11.4 81 382-470 92-175 (308)
127 COG1648 CysG Siroheme synthase 68.5 15 0.00032 39.0 7.1 71 642-731 12-82 (210)
128 PRK00536 speE spermidine synth 68.5 14 0.00031 40.5 7.2 75 640-728 71-146 (262)
129 PRK06101 short chain dehydroge 68.5 17 0.00036 38.6 7.7 62 383-456 2-64 (240)
130 PRK05854 short chain dehydroge 68.2 20 0.00043 40.0 8.6 69 382-456 14-83 (313)
131 PLN02214 cinnamoyl-CoA reducta 68.0 26 0.00057 39.6 9.6 81 642-731 10-91 (342)
132 PRK11908 NAD-dependent epimera 67.9 16 0.00035 41.1 7.9 73 383-468 2-76 (347)
133 TIGR02356 adenyl_thiF thiazole 67.5 69 0.0015 33.5 12.0 35 381-420 20-54 (202)
134 PLN02427 UDP-apiose/xylose syn 67.4 17 0.00038 41.6 8.2 81 382-469 14-95 (386)
135 PRK07062 short chain dehydroge 67.4 22 0.00048 38.1 8.5 82 382-469 8-96 (265)
136 PRK07666 fabG 3-ketoacyl-(acyl 67.3 21 0.00046 37.5 8.3 80 382-469 7-93 (239)
137 PRK01581 speE spermidine synth 67.1 42 0.00091 38.7 10.8 82 641-730 150-235 (374)
138 PLN02896 cinnamyl-alcohol dehy 67.1 25 0.00055 39.7 9.3 80 381-470 9-89 (353)
139 TIGR03649 ergot_EASG ergot alk 66.8 18 0.00039 39.4 7.8 69 385-470 2-77 (285)
140 TIGR01181 dTDP_gluc_dehyt dTDP 66.8 14 0.00029 40.5 6.9 80 644-731 1-83 (317)
141 PLN02780 ketoreductase/ oxidor 66.5 43 0.00094 37.6 10.9 61 382-448 53-114 (320)
142 PLN02650 dihydroflavonol-4-red 65.7 24 0.00051 39.8 8.7 82 382-470 5-87 (351)
143 PRK10637 cysG siroheme synthas 65.6 22 0.00048 42.1 8.7 72 641-731 11-82 (457)
144 PRK06172 short chain dehydroge 65.5 25 0.00054 37.4 8.4 67 382-456 7-74 (253)
145 PF13241 NAD_binding_7: Putati 65.4 25 0.00054 32.6 7.3 34 641-677 6-39 (103)
146 PRK08643 acetoin reductase; Va 65.3 24 0.00052 37.5 8.3 78 383-468 3-87 (256)
147 PRK08340 glucose-1-dehydrogena 65.2 22 0.00048 38.0 8.0 64 383-455 1-65 (259)
148 PRK07523 gluconate 5-dehydroge 65.0 26 0.00057 37.3 8.5 80 382-469 10-96 (255)
149 KOG3676 Ca2+-permeable cation 65.0 29 0.00062 43.1 9.4 55 313-367 586-649 (782)
150 PF02386 TrkH: Cation transpor 64.9 4.4 9.5E-05 46.3 2.6 64 287-350 267-338 (354)
151 TIGR03438 probable methyltrans 64.9 89 0.0019 34.8 12.9 121 384-515 66-190 (301)
152 PLN02989 cinnamyl-alcohol dehy 64.7 24 0.00051 39.2 8.4 82 382-470 5-87 (325)
153 PRK12829 short chain dehydroge 64.6 25 0.00054 37.5 8.2 78 382-469 11-95 (264)
154 PRK05565 fabG 3-ketoacyl-(acyl 64.5 26 0.00057 36.7 8.3 81 382-470 5-93 (247)
155 PRK05993 short chain dehydroge 64.5 21 0.00046 38.8 7.8 73 382-468 4-84 (277)
156 PRK07097 gluconate 5-dehydroge 64.4 26 0.00057 37.6 8.4 80 382-469 10-96 (265)
157 PRK00811 spermidine synthase; 64.4 71 0.0015 35.4 11.9 81 381-470 76-160 (283)
158 PRK12939 short chain dehydroge 64.0 28 0.00061 36.6 8.4 81 382-470 7-94 (250)
159 PF00670 AdoHcyase_NAD: S-aden 63.9 8.1 0.00018 39.2 3.9 35 642-679 23-57 (162)
160 PRK12429 3-hydroxybutyrate deh 63.8 28 0.0006 36.9 8.4 79 383-469 5-90 (258)
161 TIGR03589 PseB UDP-N-acetylglu 63.8 32 0.0007 38.5 9.2 79 383-470 5-84 (324)
162 PRK05866 short chain dehydroge 63.7 26 0.00056 38.7 8.3 79 383-469 41-126 (293)
163 PF12847 Methyltransf_18: Meth 63.6 89 0.0019 28.5 10.8 76 383-468 3-78 (112)
164 PLN00141 Tic62-NAD(P)-related 63.6 24 0.00053 37.7 7.9 77 642-731 17-95 (251)
165 cd01078 NAD_bind_H4MPT_DH NADP 63.6 17 0.00036 37.6 6.4 78 642-730 28-106 (194)
166 PRK06482 short chain dehydroge 63.3 27 0.00058 37.8 8.2 77 383-470 3-86 (276)
167 PRK07102 short chain dehydroge 63.2 27 0.00058 36.9 8.1 79 383-468 2-84 (243)
168 PRK06124 gluconate 5-dehydroge 63.2 28 0.00062 37.0 8.3 80 382-469 11-97 (256)
169 COG0373 HemA Glutamyl-tRNA red 63.2 15 0.00032 42.9 6.4 71 641-731 177-248 (414)
170 PRK08017 oxidoreductase; Provi 63.1 19 0.00042 38.1 7.0 59 383-455 3-62 (256)
171 PRK12384 sorbitol-6-phosphate 63.0 29 0.00063 37.0 8.4 68 383-456 3-71 (259)
172 PRK12826 3-ketoacyl-(acyl-carr 62.8 30 0.00065 36.4 8.4 81 382-470 6-93 (251)
173 PRK07067 sorbitol dehydrogenas 62.7 29 0.00063 37.0 8.3 76 382-468 6-88 (257)
174 PRK07074 short chain dehydroge 62.6 39 0.00084 35.9 9.3 78 643-731 3-87 (257)
175 KOG1014 17 beta-hydroxysteroid 62.6 54 0.0012 36.7 10.3 44 381-430 48-92 (312)
176 PF00060 Lig_chan: Ligand-gate 62.6 3.5 7.6E-05 40.2 1.1 55 314-368 45-99 (148)
177 PRK06200 2,3-dihydroxy-2,3-dih 62.5 27 0.00058 37.5 8.0 64 382-456 6-70 (263)
178 TIGR03466 HpnA hopanoid-associ 62.2 17 0.00038 40.0 6.7 71 384-469 2-73 (328)
179 PRK06182 short chain dehydroge 62.1 21 0.00044 38.6 7.1 74 382-469 3-83 (273)
180 TIGR01832 kduD 2-deoxy-D-gluco 62.0 72 0.0016 33.6 11.2 79 642-731 5-90 (248)
181 PRK10750 potassium transporter 61.9 51 0.0011 39.5 10.8 71 288-359 397-475 (483)
182 PRK05653 fabG 3-ketoacyl-(acyl 61.9 31 0.00068 36.0 8.3 80 383-470 6-92 (246)
183 TIGR00933 2a38 potassium uptak 61.8 22 0.00047 41.2 7.6 38 296-334 111-149 (390)
184 PLN02662 cinnamyl-alcohol dehy 61.7 25 0.00053 38.9 7.8 81 383-470 5-86 (322)
185 TIGR03466 HpnA hopanoid-associ 61.7 19 0.00041 39.7 6.8 71 644-730 2-73 (328)
186 PRK08219 short chain dehydroge 61.7 26 0.00057 36.2 7.6 75 383-470 4-81 (227)
187 PRK05867 short chain dehydroge 61.6 33 0.00072 36.5 8.5 78 383-468 10-94 (253)
188 TIGR02853 spore_dpaA dipicolin 61.6 87 0.0019 34.8 11.9 122 382-536 151-281 (287)
189 PRK07109 short chain dehydroge 61.5 30 0.00066 39.0 8.5 80 382-469 8-94 (334)
190 PRK14106 murD UDP-N-acetylmura 61.3 17 0.00037 42.6 6.7 74 642-731 5-78 (450)
191 PRK05650 short chain dehydroge 61.3 31 0.00067 37.2 8.3 78 384-469 2-86 (270)
192 PRK07890 short chain dehydroge 61.3 31 0.00067 36.6 8.2 80 382-469 5-91 (258)
193 PRK08213 gluconate 5-dehydroge 61.2 33 0.00072 36.6 8.4 80 382-469 12-98 (259)
194 PRK06197 short chain dehydroge 61.1 27 0.00059 38.5 8.0 81 382-468 16-103 (306)
195 PRK07576 short chain dehydroge 61.0 31 0.00067 37.2 8.2 79 382-468 9-94 (264)
196 TIGR00518 alaDH alanine dehydr 61.0 36 0.00079 39.2 9.1 72 382-468 167-238 (370)
197 PRK09242 tropinone reductase; 60.9 33 0.00072 36.5 8.4 81 383-469 10-97 (257)
198 TIGR02964 xanthine_xdhC xanthi 60.8 34 0.00074 37.2 8.4 85 641-749 99-183 (246)
199 PLN02657 3,8-divinyl protochlo 60.6 19 0.00041 41.7 6.8 80 382-469 60-145 (390)
200 PRK06139 short chain dehydroge 60.5 30 0.00065 39.1 8.2 80 382-469 7-93 (330)
201 cd01483 E1_enzyme_family Super 60.4 1.1E+02 0.0024 29.8 11.3 32 384-420 1-32 (143)
202 PRK06500 short chain dehydroge 60.4 37 0.00079 35.8 8.5 77 382-469 6-89 (249)
203 PRK05875 short chain dehydroge 60.3 39 0.00085 36.4 8.9 82 382-469 7-95 (276)
204 PF13478 XdhC_C: XdhC Rossmann 60.2 27 0.00058 34.4 6.8 77 645-749 1-77 (136)
205 PRK01581 speE spermidine synth 60.0 1.1E+02 0.0024 35.3 12.5 80 382-470 151-236 (374)
206 cd01075 NAD_bind_Leu_Phe_Val_D 59.9 36 0.00077 35.7 8.1 42 642-688 28-69 (200)
207 PRK08339 short chain dehydroge 59.9 35 0.00077 36.8 8.4 67 383-456 9-76 (263)
208 PRK06181 short chain dehydroge 59.9 36 0.00078 36.3 8.4 79 383-469 2-87 (263)
209 PLN02214 cinnamoyl-CoA reducta 59.8 62 0.0013 36.5 10.7 80 382-470 10-91 (342)
210 PRK13394 3-hydroxybutyrate deh 59.6 33 0.00072 36.4 8.1 79 383-469 8-93 (262)
211 PRK06914 short chain dehydroge 59.6 58 0.0013 35.2 10.1 81 643-731 4-91 (280)
212 PRK06924 short chain dehydroge 59.4 26 0.00056 37.1 7.1 63 643-716 2-65 (251)
213 PRK06924 short chain dehydroge 59.3 31 0.00068 36.5 7.8 63 383-456 2-66 (251)
214 PRK07074 short chain dehydroge 59.1 44 0.00095 35.6 8.9 78 383-470 3-87 (257)
215 PF00070 Pyr_redox: Pyridine n 58.8 16 0.00034 32.0 4.5 31 644-677 1-31 (80)
216 PRK07688 thiamine/molybdopteri 58.8 38 0.00082 38.6 8.7 83 641-730 23-125 (339)
217 TIGR03589 PseB UDP-N-acetylglu 58.5 32 0.0007 38.5 8.0 79 643-731 5-84 (324)
218 PRK09072 short chain dehydroge 57.8 40 0.00086 36.1 8.4 80 382-470 5-90 (263)
219 COG4262 Predicted spermidine s 57.7 1.1E+02 0.0025 35.0 11.7 115 380-505 288-410 (508)
220 PRK06194 hypothetical protein; 57.6 65 0.0014 34.9 10.1 81 642-731 6-93 (287)
221 PRK01438 murD UDP-N-acetylmura 57.6 22 0.00048 42.2 6.9 70 641-730 15-87 (480)
222 PRK07478 short chain dehydroge 57.3 42 0.00091 35.7 8.4 79 383-469 7-92 (254)
223 PRK07774 short chain dehydroge 57.2 43 0.00093 35.3 8.4 80 382-469 6-92 (250)
224 PRK08217 fabG 3-ketoacyl-(acyl 57.2 44 0.00095 35.2 8.5 80 382-469 5-91 (253)
225 PRK05884 short chain dehydroge 57.0 31 0.00067 36.3 7.2 72 384-468 2-77 (223)
226 PRK07326 short chain dehydroge 57.0 51 0.0011 34.4 8.9 79 642-731 6-92 (237)
227 TIGR00518 alaDH alanine dehydr 57.0 27 0.00058 40.3 7.1 72 642-729 167-238 (370)
228 cd01485 E1-1_like Ubiquitin ac 56.8 60 0.0013 33.9 9.2 35 381-420 18-52 (198)
229 PF01210 NAD_Gly3P_dh_N: NAD-d 56.5 16 0.00034 36.7 4.5 78 644-730 1-78 (157)
230 PF00106 adh_short: short chai 56.4 23 0.0005 34.8 5.8 84 643-732 1-91 (167)
231 PRK09291 short chain dehydroge 56.3 84 0.0018 33.3 10.5 80 643-731 3-83 (257)
232 PRK06180 short chain dehydroge 56.2 39 0.00085 36.6 8.0 62 383-455 5-67 (277)
233 PRK04457 spermidine synthase; 56.1 1.4E+02 0.003 32.7 12.2 78 383-469 68-145 (262)
234 PLN02583 cinnamoyl-CoA reducta 56.0 39 0.00084 37.3 8.1 79 642-729 6-86 (297)
235 PRK06179 short chain dehydroge 56.0 22 0.00048 38.2 6.0 71 383-469 5-82 (270)
236 TIGR02415 23BDH acetoin reduct 56.0 45 0.00096 35.3 8.3 78 384-469 2-86 (254)
237 PRK07424 bifunctional sterol d 56.0 1E+02 0.0022 36.1 11.7 75 383-469 179-254 (406)
238 PF00056 Ldh_1_N: lactate/mala 55.9 32 0.0007 33.9 6.6 76 383-470 1-79 (141)
239 PF05185 PRMT5: PRMT5 arginine 55.9 31 0.00067 40.9 7.5 78 382-466 187-264 (448)
240 PF08016 PKD_channel: Polycyst 55.5 1.1E+02 0.0024 35.8 12.1 29 159-187 207-235 (425)
241 PRK07904 short chain dehydroge 55.5 40 0.00086 36.2 7.8 81 382-468 8-95 (253)
242 PRK05482 potassium-transportin 55.4 30 0.00064 41.8 7.2 72 289-360 417-502 (559)
243 PRK07814 short chain dehydroge 55.2 48 0.001 35.6 8.5 80 382-469 10-96 (263)
244 PRK09135 pteridine reductase; 55.1 53 0.0011 34.5 8.6 81 382-469 6-94 (249)
245 TIGR03649 ergot_EASG ergot alk 54.9 24 0.00053 38.4 6.2 69 644-730 1-76 (285)
246 PRK12829 short chain dehydroge 54.9 30 0.00065 36.8 6.8 80 641-731 10-96 (264)
247 PRK07454 short chain dehydroge 54.8 82 0.0018 33.1 10.0 81 642-731 6-93 (241)
248 PRK05876 short chain dehydroge 54.7 49 0.0011 36.0 8.5 79 383-469 7-92 (275)
249 PRK08264 short chain dehydroge 54.7 45 0.00097 34.9 8.0 74 382-470 6-83 (238)
250 COG2985 Predicted permease [Ge 54.7 14 0.0003 43.5 4.1 57 561-621 211-268 (544)
251 PLN02583 cinnamoyl-CoA reducta 54.4 57 0.0012 36.0 9.0 78 382-468 6-86 (297)
252 PRK08085 gluconate 5-dehydroge 54.2 51 0.0011 35.0 8.4 65 383-455 10-75 (254)
253 PF10883 DUF2681: Protein of u 54.2 28 0.00061 31.7 5.2 33 159-191 3-35 (87)
254 PRK05717 oxidoreductase; Valid 54.1 56 0.0012 34.8 8.7 77 382-469 10-93 (255)
255 COG0421 SpeE Spermidine syntha 54.1 39 0.00085 37.5 7.5 78 383-470 78-159 (282)
256 PRK07825 short chain dehydroge 54.0 42 0.00091 36.2 7.8 75 383-469 6-87 (273)
257 PLN02427 UDP-apiose/xylose syn 53.9 50 0.0011 37.8 8.8 82 641-730 13-95 (386)
258 PRK08125 bifunctional UDP-gluc 53.7 28 0.00062 43.2 7.1 78 380-469 313-391 (660)
259 TIGR03206 benzo_BadH 2-hydroxy 53.5 55 0.0012 34.4 8.5 80 382-469 3-89 (250)
260 TIGR03325 BphB_TodD cis-2,3-di 53.5 49 0.0011 35.4 8.2 75 383-468 6-87 (262)
261 PRK08589 short chain dehydroge 53.4 52 0.0011 35.6 8.4 79 382-469 6-91 (272)
262 PRK12824 acetoacetyl-CoA reduc 53.3 1E+02 0.0022 32.2 10.5 81 643-731 3-90 (245)
263 PF07991 IlvN: Acetohydroxy ac 53.3 19 0.00041 36.6 4.4 66 382-470 4-70 (165)
264 PRK07775 short chain dehydroge 53.2 51 0.0011 35.7 8.3 81 382-470 10-97 (274)
265 PRK06196 oxidoreductase; Provi 53.2 39 0.00084 37.6 7.5 75 383-469 27-108 (315)
266 TIGR01181 dTDP_gluc_dehyt dTDP 53.1 34 0.00073 37.4 7.0 78 384-470 1-83 (317)
267 PRK07024 short chain dehydroge 53.0 40 0.00087 36.0 7.4 79 643-731 3-88 (257)
268 PRK05599 hypothetical protein; 53.0 45 0.00098 35.5 7.8 64 384-455 2-66 (246)
269 PRK12828 short chain dehydroge 53.0 46 0.00099 34.6 7.7 77 383-469 8-91 (239)
270 PRK06138 short chain dehydroge 52.8 1.4E+02 0.0029 31.5 11.4 80 642-731 5-91 (252)
271 PRK12936 3-ketoacyl-(acyl-carr 52.7 79 0.0017 33.0 9.5 78 382-470 6-90 (245)
272 PF01073 3Beta_HSD: 3-beta hyd 52.5 22 0.00048 39.2 5.4 69 649-730 5-75 (280)
273 KOG1201 Hydroxysteroid 17-beta 52.4 1.4E+02 0.003 33.4 11.2 66 381-455 37-103 (300)
274 TIGR01289 LPOR light-dependent 52.3 54 0.0012 36.5 8.5 65 382-454 3-69 (314)
275 PRK07417 arogenate dehydrogena 52.1 77 0.0017 34.8 9.5 66 384-470 2-67 (279)
276 PRK08277 D-mannonate oxidoredu 52.0 54 0.0012 35.4 8.2 80 382-469 10-96 (278)
277 TIGR01500 sepiapter_red sepiap 52.0 50 0.0011 35.3 7.9 70 384-455 2-72 (256)
278 TIGR01963 PHB_DH 3-hydroxybuty 51.9 53 0.0011 34.6 8.0 78 384-469 3-87 (255)
279 PRK12481 2-deoxy-D-gluconate 3 51.9 42 0.00092 35.8 7.3 79 642-731 8-93 (251)
280 PRK07035 short chain dehydroge 51.9 60 0.0013 34.4 8.5 66 382-455 8-74 (252)
281 PRK07453 protochlorophyllide o 51.7 57 0.0012 36.3 8.6 66 382-455 6-72 (322)
282 COG1086 Predicted nucleoside-d 51.6 1.1E+02 0.0024 37.1 11.0 120 382-506 250-378 (588)
283 PLN02253 xanthoxin dehydrogena 51.4 58 0.0013 35.2 8.4 78 383-469 19-103 (280)
284 PF03446 NAD_binding_2: NAD bi 51.4 1.8E+02 0.0038 29.2 11.3 93 383-506 2-97 (163)
285 TIGR00872 gnd_rel 6-phosphoglu 51.2 1.5E+02 0.0032 33.0 11.6 68 384-470 2-69 (298)
286 PLN02986 cinnamyl-alcohol dehy 51.2 56 0.0012 36.2 8.4 78 383-470 6-87 (322)
287 PRK07677 short chain dehydroge 51.1 62 0.0013 34.4 8.5 77 384-468 3-86 (252)
288 PLN02896 cinnamyl-alcohol dehy 50.8 64 0.0014 36.4 8.9 79 642-731 10-89 (353)
289 PRK12921 2-dehydropantoate 2-r 50.7 1.4E+02 0.003 32.8 11.4 38 383-427 1-38 (305)
290 PRK12548 shikimate 5-dehydroge 50.3 73 0.0016 35.3 9.0 81 382-470 126-209 (289)
291 PRK15181 Vi polysaccharide bio 50.3 46 0.001 37.6 7.7 83 642-731 15-100 (348)
292 PF08659 KR: KR domain; Inter 50.3 1.2E+02 0.0026 30.8 10.1 102 644-755 2-115 (181)
293 COG0771 MurD UDP-N-acetylmuram 50.2 33 0.00071 40.6 6.4 36 642-680 7-42 (448)
294 PRK13394 3-hydroxybutyrate deh 50.1 50 0.0011 35.1 7.5 79 642-731 7-94 (262)
295 PRK07831 short chain dehydroge 50.0 1.1E+02 0.0024 32.6 10.3 83 642-731 17-107 (262)
296 PRK15181 Vi polysaccharide bio 50.0 49 0.0011 37.4 7.8 81 383-470 16-100 (348)
297 PRK08264 short chain dehydroge 49.9 1.2E+02 0.0026 31.7 10.3 74 642-731 6-83 (238)
298 PRK12429 3-hydroxybutyrate deh 49.8 94 0.002 32.8 9.6 80 643-731 5-91 (258)
299 KOG1210 Predicted 3-ketosphing 49.8 90 0.002 35.1 9.3 68 381-454 32-100 (331)
300 PRK08063 enoyl-(acyl carrier p 49.7 57 0.0012 34.4 7.9 80 383-470 5-92 (250)
301 PLN02989 cinnamyl-alcohol dehy 49.7 60 0.0013 36.0 8.3 80 642-731 5-87 (325)
302 PLN02366 spermidine synthase 49.6 80 0.0017 35.5 9.2 83 641-730 91-174 (308)
303 PLN02662 cinnamyl-alcohol dehy 49.6 40 0.00086 37.2 6.9 80 643-731 5-86 (322)
304 PRK08862 short chain dehydroge 49.6 66 0.0014 34.0 8.3 41 383-429 6-47 (227)
305 PRK12939 short chain dehydroge 49.5 1.1E+02 0.0023 32.1 9.9 81 642-731 7-94 (250)
306 PLN02650 dihydroflavonol-4-red 49.4 46 0.001 37.5 7.5 81 642-731 5-87 (351)
307 TIGR02415 23BDH acetoin reduct 49.4 1.5E+02 0.0033 31.2 11.1 80 643-731 1-87 (254)
308 PRK07060 short chain dehydroge 49.4 53 0.0011 34.5 7.5 74 383-469 10-86 (245)
309 PRK08762 molybdopterin biosynt 49.3 1.7E+02 0.0038 33.7 12.2 35 381-420 134-168 (376)
310 cd05291 HicDH_like L-2-hydroxy 49.3 22 0.00049 39.7 4.8 75 384-470 2-78 (306)
311 PRK08594 enoyl-(acyl carrier p 49.1 44 0.00095 36.0 6.9 80 642-730 7-96 (257)
312 PRK06101 short chain dehydroge 48.9 37 0.00081 35.9 6.3 75 643-730 2-80 (240)
313 PRK05476 S-adenosyl-L-homocyst 48.8 82 0.0018 37.1 9.4 37 382-424 212-248 (425)
314 PRK05993 short chain dehydroge 48.8 43 0.00094 36.3 6.9 74 642-730 4-85 (277)
315 PRK12826 3-ketoacyl-(acyl-carr 48.7 56 0.0012 34.3 7.6 79 642-731 6-93 (251)
316 PRK06483 dihydromonapterin red 48.6 50 0.0011 34.6 7.2 61 382-455 2-63 (236)
317 COG2242 CobL Precorrin-6B meth 48.5 2.6E+02 0.0057 29.2 11.9 117 380-516 33-153 (187)
318 PLN02494 adenosylhomocysteinas 48.5 63 0.0014 38.5 8.4 37 382-424 254-290 (477)
319 PRK15116 sulfur acceptor prote 48.3 2.1E+02 0.0045 31.7 11.9 36 381-421 29-64 (268)
320 PRK08263 short chain dehydroge 48.2 65 0.0014 34.8 8.2 77 383-470 4-87 (275)
321 PRK08251 short chain dehydroge 48.1 1.8E+02 0.0039 30.5 11.4 82 643-731 3-91 (248)
322 PF01210 NAD_Gly3P_dh_N: NAD-d 48.0 28 0.00061 34.8 4.9 73 384-470 1-79 (157)
323 cd01065 NAD_bind_Shikimate_DH 47.9 41 0.00089 32.9 6.0 75 641-732 18-92 (155)
324 cd00757 ThiF_MoeB_HesA_family 47.7 2.2E+02 0.0048 30.2 11.9 36 381-421 20-55 (228)
325 PRK05597 molybdopterin biosynt 47.7 2E+02 0.0043 33.0 12.3 83 381-470 27-128 (355)
326 PRK05693 short chain dehydroge 47.6 59 0.0013 35.1 7.7 73 383-469 2-81 (274)
327 PRK09599 6-phosphogluconate de 47.1 3.2E+02 0.0069 30.3 13.6 68 384-470 2-69 (301)
328 PRK03612 spermidine synthase; 47.1 76 0.0016 38.4 9.1 82 640-729 296-381 (521)
329 PRK08993 2-deoxy-D-gluconate 3 47.0 1.3E+02 0.0028 32.0 10.2 79 642-731 10-95 (253)
330 KOG1208 Dehydrogenases with di 47.0 72 0.0016 36.0 8.3 67 383-455 36-103 (314)
331 PRK06947 glucose-1-dehydrogena 47.0 74 0.0016 33.5 8.2 80 382-469 2-89 (248)
332 PLN02657 3,8-divinyl protochlo 46.9 87 0.0019 36.3 9.3 79 641-730 59-145 (390)
333 KOG4440 NMDA selective glutama 46.6 14 0.00031 44.2 2.7 54 312-365 612-666 (993)
334 PRK08643 acetoin reductase; Va 46.5 1.5E+02 0.0032 31.5 10.4 80 643-731 3-89 (256)
335 TIGR00936 ahcY adenosylhomocys 46.5 73 0.0016 37.3 8.5 37 382-424 195-231 (406)
336 PRK12320 hypothetical protein; 46.5 97 0.0021 38.9 10.0 68 384-470 2-70 (699)
337 PRK06079 enoyl-(acyl carrier p 46.5 68 0.0015 34.3 7.9 62 383-455 8-72 (252)
338 COG1087 GalE UDP-glucose 4-epi 46.5 37 0.0008 38.0 5.7 74 644-731 2-77 (329)
339 PRK12935 acetoacetyl-CoA reduc 46.3 1.2E+02 0.0027 31.8 9.8 82 642-731 6-94 (247)
340 PRK05872 short chain dehydroge 46.3 77 0.0017 34.8 8.5 79 382-469 9-94 (296)
341 PRK08017 oxidoreductase; Provi 46.2 46 0.00099 35.3 6.5 73 643-730 3-83 (256)
342 PF02558 ApbA: Ketopantoate re 46.1 53 0.0011 32.1 6.4 75 645-729 1-75 (151)
343 PRK06057 short chain dehydroge 46.1 59 0.0013 34.6 7.3 73 383-468 8-87 (255)
344 cd05213 NAD_bind_Glutamyl_tRNA 46.0 36 0.00079 38.1 5.8 72 641-731 177-248 (311)
345 PF00070 Pyr_redox: Pyridine n 46.0 28 0.0006 30.4 3.9 32 384-421 1-32 (80)
346 PRK06182 short chain dehydroge 45.9 1.2E+02 0.0025 32.8 9.7 75 642-731 3-84 (273)
347 PRK06949 short chain dehydroge 45.7 1.2E+02 0.0025 32.2 9.5 81 642-731 9-96 (258)
348 PRK07904 short chain dehydroge 45.6 50 0.0011 35.4 6.7 81 641-730 7-96 (253)
349 PF00899 ThiF: ThiF family; I 45.4 78 0.0017 30.6 7.4 33 642-677 2-35 (135)
350 PF05399 EVI2A: Ectropic viral 45.3 83 0.0018 33.2 7.6 30 160-189 137-166 (227)
351 cd05290 LDH_3 A subgroup of L- 45.2 1.7E+02 0.0037 32.9 11.0 75 384-470 1-78 (307)
352 PRK06953 short chain dehydroge 45.2 99 0.0021 32.1 8.7 72 384-469 3-79 (222)
353 PLN02823 spermine synthase 44.7 69 0.0015 36.5 7.8 80 382-470 104-186 (336)
354 PRK08628 short chain dehydroge 44.7 74 0.0016 33.8 7.8 79 382-469 7-92 (258)
355 PRK06113 7-alpha-hydroxysteroi 44.7 88 0.0019 33.2 8.4 80 382-469 11-97 (255)
356 PRK06125 short chain dehydroge 44.4 88 0.0019 33.3 8.4 79 383-468 8-89 (259)
357 PRK07060 short chain dehydroge 44.4 1.3E+02 0.0027 31.5 9.5 76 642-731 9-87 (245)
358 TIGR03439 methyl_EasF probable 44.4 3E+02 0.0066 31.2 12.8 125 384-514 79-209 (319)
359 PRK05326 potassium/proton anti 44.2 24 0.00052 43.0 4.4 45 862-915 429-473 (562)
360 PRK10675 UDP-galactose-4-epime 44.2 61 0.0013 36.0 7.4 78 644-731 2-83 (338)
361 KOG1053 Glutamate-gated NMDA-t 44.2 50 0.0011 41.5 6.8 56 312-367 608-664 (1258)
362 PRK07832 short chain dehydroge 44.2 81 0.0017 34.0 8.1 79 384-469 2-87 (272)
363 PRK07062 short chain dehydroge 44.1 2.2E+02 0.0047 30.4 11.4 83 642-731 8-97 (265)
364 PLN00198 anthocyanidin reducta 43.9 89 0.0019 34.9 8.6 81 382-470 9-90 (338)
365 PRK08213 gluconate 5-dehydroge 43.7 1.3E+02 0.0029 31.9 9.6 81 642-731 12-99 (259)
366 PRK06482 short chain dehydroge 43.6 1.8E+02 0.0039 31.2 10.7 77 643-731 3-86 (276)
367 PRK06172 short chain dehydroge 43.5 73 0.0016 33.7 7.5 79 642-731 7-94 (253)
368 PRK07666 fabG 3-ketoacyl-(acyl 43.4 1.9E+02 0.0041 30.2 10.6 81 642-731 7-94 (239)
369 KOG1371 UDP-glucose 4-epimeras 43.4 80 0.0017 35.7 7.7 99 642-751 2-111 (343)
370 COG0373 HemA Glutamyl-tRNA red 43.2 61 0.0013 38.0 7.1 72 382-471 178-249 (414)
371 PF02558 ApbA: Ketopantoate re 43.1 1.1E+02 0.0024 29.8 8.2 74 385-470 1-77 (151)
372 PRK08063 enoyl-(acyl carrier p 43.1 1.3E+02 0.0028 31.6 9.3 81 643-731 5-92 (250)
373 cd00401 AdoHcyase S-adenosyl-L 42.9 1.2E+02 0.0026 35.6 9.6 98 369-499 189-286 (413)
374 TIGR01318 gltD_gamma_fam gluta 42.8 52 0.0011 39.1 6.8 35 641-678 140-174 (467)
375 PRK12827 short chain dehydroge 42.7 91 0.002 32.6 8.1 80 382-469 6-96 (249)
376 PRK05557 fabG 3-ketoacyl-(acyl 42.7 1.5E+02 0.0033 30.8 9.7 82 642-731 5-93 (248)
377 PLN02823 spermine synthase 42.6 97 0.0021 35.3 8.6 81 641-729 103-184 (336)
378 PRK12490 6-phosphogluconate de 42.6 2.5E+02 0.0054 31.1 11.8 67 384-470 2-69 (299)
379 PRK07677 short chain dehydroge 42.5 2E+02 0.0043 30.5 10.7 79 643-730 2-87 (252)
380 PF03446 NAD_binding_2: NAD bi 42.3 1.1E+02 0.0024 30.7 8.1 42 643-689 2-43 (163)
381 cd01483 E1_enzyme_family Super 42.2 85 0.0018 30.6 7.2 31 644-677 1-32 (143)
382 PRK07067 sorbitol dehydrogenas 42.1 1.4E+02 0.003 31.7 9.5 78 642-731 6-90 (257)
383 PF02719 Polysacc_synt_2: Poly 42.1 37 0.00081 37.8 5.0 80 385-469 1-86 (293)
384 PRK14106 murD UDP-N-acetylmura 42.0 67 0.0014 37.7 7.5 73 382-470 5-78 (450)
385 cd01487 E1_ThiF_like E1_ThiF_l 41.9 1.1E+02 0.0023 31.4 8.1 33 384-421 1-33 (174)
386 PRK12746 short chain dehydroge 41.9 89 0.0019 33.0 7.9 79 383-469 7-99 (254)
387 PF02826 2-Hacid_dh_C: D-isome 41.7 39 0.00085 34.5 4.9 36 641-679 35-70 (178)
388 PRK06198 short chain dehydroge 41.7 97 0.0021 32.9 8.2 80 382-469 6-93 (260)
389 PRK09135 pteridine reductase; 41.7 1.6E+02 0.0035 30.7 9.8 83 642-731 6-95 (249)
390 TIGR01472 gmd GDP-mannose 4,6- 41.6 58 0.0013 36.5 6.7 83 643-731 1-88 (343)
391 TIGR02853 spore_dpaA dipicolin 41.6 58 0.0013 36.2 6.5 34 642-678 151-184 (287)
392 PRK08226 short chain dehydroge 41.6 88 0.0019 33.3 7.8 66 382-456 6-72 (263)
393 PRK07041 short chain dehydroge 41.5 76 0.0017 33.0 7.2 75 386-469 1-78 (230)
394 PRK11908 NAD-dependent epimera 41.4 79 0.0017 35.5 7.7 73 644-730 3-77 (347)
395 PLN00198 anthocyanidin reducta 41.4 96 0.0021 34.7 8.4 80 642-731 9-90 (338)
396 PRK07806 short chain dehydroge 41.2 1E+02 0.0022 32.5 8.1 78 383-468 7-92 (248)
397 PRK07231 fabG 3-ketoacyl-(acyl 41.2 67 0.0015 33.7 6.8 80 642-731 5-91 (251)
398 PRK08594 enoyl-(acyl carrier p 41.1 95 0.0021 33.3 8.0 62 383-454 8-75 (257)
399 PLN02686 cinnamoyl-CoA reducta 41.1 76 0.0016 36.3 7.6 80 381-468 52-136 (367)
400 PRK06124 gluconate 5-dehydroge 41.0 1E+02 0.0022 32.6 8.2 79 642-731 11-98 (256)
401 PTZ00075 Adenosylhomocysteinas 41.0 66 0.0014 38.4 7.1 65 382-469 254-318 (476)
402 PRK12935 acetoacetyl-CoA reduc 41.0 1E+02 0.0022 32.5 8.1 81 382-470 6-94 (247)
403 PRK05693 short chain dehydroge 41.0 1.9E+02 0.0042 31.0 10.4 74 643-731 2-82 (274)
404 PLN02986 cinnamyl-alcohol dehy 40.9 86 0.0019 34.7 7.8 80 642-731 5-87 (322)
405 PRK12746 short chain dehydroge 40.9 1.8E+02 0.0039 30.6 10.1 82 642-731 6-100 (254)
406 PRK10675 UDP-galactose-4-epime 40.8 82 0.0018 35.0 7.7 80 384-470 2-83 (338)
407 PRK08416 7-alpha-hydroxysteroi 40.8 75 0.0016 34.0 7.1 82 642-730 8-96 (260)
408 PRK07023 short chain dehydroge 40.7 74 0.0016 33.5 7.0 60 383-455 2-62 (243)
409 PRK07424 bifunctional sterol d 40.7 1.6E+02 0.0034 34.6 10.1 77 642-731 178-255 (406)
410 PRK07806 short chain dehydroge 40.7 69 0.0015 33.8 6.7 81 642-730 6-93 (248)
411 PRK12745 3-ketoacyl-(acyl-carr 40.7 71 0.0015 33.8 6.9 81 643-731 3-90 (256)
412 PF02737 3HCDH_N: 3-hydroxyacy 40.5 61 0.0013 33.3 6.1 40 384-429 1-40 (180)
413 PRK08265 short chain dehydroge 40.4 77 0.0017 34.0 7.1 77 642-730 6-89 (261)
414 PRK07063 short chain dehydroge 40.4 1.5E+02 0.0033 31.5 9.4 83 642-731 7-96 (260)
415 PRK07201 short chain dehydroge 40.4 85 0.0018 38.6 8.4 80 382-469 371-457 (657)
416 PRK05855 short chain dehydroge 40.4 88 0.0019 37.5 8.4 80 382-469 315-401 (582)
417 PRK07985 oxidoreductase; Provi 40.3 65 0.0014 35.5 6.7 82 642-730 49-137 (294)
418 PRK12825 fabG 3-ketoacyl-(acyl 40.3 1.9E+02 0.004 30.1 10.0 81 643-731 7-94 (249)
419 PRK06940 short chain dehydroge 40.3 74 0.0016 34.6 7.0 80 642-731 2-86 (275)
420 PRK01710 murD UDP-N-acetylmura 40.2 59 0.0013 38.5 6.7 34 642-678 14-47 (458)
421 PF01564 Spermine_synth: Sperm 40.2 62 0.0014 35.1 6.3 82 381-470 76-160 (246)
422 PRK06079 enoyl-(acyl carrier p 40.1 71 0.0015 34.2 6.8 77 642-730 7-92 (252)
423 PRK14620 NAD(P)H-dependent gly 40.1 1.1E+02 0.0024 34.2 8.7 39 384-428 2-40 (326)
424 COG1893 ApbA Ketopantoate redu 39.9 1.4E+02 0.003 33.6 9.2 75 383-470 1-77 (307)
425 TIGR01832 kduD 2-deoxy-D-gluco 39.8 1.1E+02 0.0025 32.1 8.3 76 383-469 6-89 (248)
426 PRK06484 short chain dehydroge 39.8 89 0.0019 37.3 8.2 64 381-455 268-332 (520)
427 cd01484 E1-2_like Ubiquitin ac 39.8 1E+02 0.0022 33.3 7.8 37 384-425 1-37 (234)
428 PRK03612 spermidine synthase; 39.8 2.5E+02 0.0053 34.1 11.9 81 381-470 297-383 (521)
429 PF00056 Ldh_1_N: lactate/mala 39.7 2.1E+02 0.0045 28.2 9.4 77 644-732 2-80 (141)
430 cd01076 NAD_bind_1_Glu_DH NAD( 39.6 98 0.0021 33.2 7.6 41 381-427 30-81 (227)
431 PRK07102 short chain dehydroge 39.5 1.5E+02 0.0033 31.0 9.2 80 643-730 2-85 (243)
432 PRK11749 dihydropyrimidine deh 39.5 41 0.0009 39.7 5.3 35 640-677 138-172 (457)
433 PRK12744 short chain dehydroge 39.5 2.1E+02 0.0046 30.3 10.3 83 642-731 8-99 (257)
434 PRK05854 short chain dehydroge 39.5 83 0.0018 35.0 7.4 82 642-730 14-102 (313)
435 PRK05565 fabG 3-ketoacyl-(acyl 39.5 1.8E+02 0.0039 30.3 9.7 80 643-731 6-93 (247)
436 PRK06125 short chain dehydroge 39.5 1.9E+02 0.0042 30.7 10.0 82 642-731 7-91 (259)
437 PRK00045 hemA glutamyl-tRNA re 39.4 70 0.0015 37.5 7.1 71 382-470 182-252 (423)
438 PRK07576 short chain dehydroge 39.4 2.3E+02 0.0051 30.3 10.8 80 642-730 9-95 (264)
439 PRK07069 short chain dehydroge 39.4 1.1E+02 0.0024 32.1 8.1 79 385-469 2-88 (251)
440 TIGR02964 xanthine_xdhC xanthi 39.3 1.3E+02 0.0027 32.8 8.5 85 380-485 98-183 (246)
441 PRK06935 2-deoxy-D-gluconate 3 39.3 2.3E+02 0.005 30.0 10.6 79 642-731 15-101 (258)
442 PRK12743 oxidoreductase; Provi 39.3 1.7E+02 0.0037 31.1 9.6 82 642-731 2-90 (256)
443 PRK09730 putative NAD(P)-bindi 39.0 1E+02 0.0022 32.2 7.8 78 384-469 3-88 (247)
444 COG4262 Predicted spermidine s 39.0 98 0.0021 35.5 7.5 82 640-730 288-374 (508)
445 PRK07523 gluconate 5-dehydroge 39.0 98 0.0021 32.8 7.6 81 642-731 10-97 (255)
446 PRK07775 short chain dehydroge 39.0 2.6E+02 0.0057 30.1 11.1 81 642-731 10-97 (274)
447 cd00755 YgdL_like Family of ac 39.0 2.4E+02 0.0052 30.3 10.5 35 382-421 11-45 (231)
448 PRK07201 short chain dehydroge 38.9 1E+02 0.0022 38.0 8.7 78 644-730 2-86 (657)
449 PF03807 F420_oxidored: NADP o 38.8 80 0.0017 28.2 5.9 70 384-470 1-71 (96)
450 PF08659 KR: KR domain; Inter 38.8 1E+02 0.0022 31.5 7.3 79 384-469 2-90 (181)
451 PRK08226 short chain dehydroge 38.7 1.9E+02 0.0041 30.7 9.9 79 642-731 6-92 (263)
452 PRK08217 fabG 3-ketoacyl-(acyl 38.7 91 0.002 32.7 7.3 80 642-730 5-91 (253)
453 PRK13302 putative L-aspartate 38.6 3E+02 0.0065 30.3 11.4 71 383-470 7-77 (271)
454 PRK08644 thiamine biosynthesis 38.6 1.7E+02 0.0036 31.0 9.1 35 381-420 27-61 (212)
455 PRK04148 hypothetical protein; 38.5 69 0.0015 31.6 5.7 69 642-729 17-85 (134)
456 PRK13940 glutamyl-tRNA reducta 38.5 79 0.0017 37.1 7.2 72 382-470 181-252 (414)
457 PLN02695 GDP-D-mannose-3',5'-e 38.5 91 0.002 35.7 7.7 74 641-730 20-94 (370)
458 PRK09242 tropinone reductase; 38.4 97 0.0021 32.9 7.5 83 642-731 9-98 (257)
459 cd01484 E1-2_like Ubiquitin ac 38.4 89 0.0019 33.7 7.1 82 644-730 1-100 (234)
460 PRK09186 flagellin modificatio 38.4 95 0.0021 32.8 7.4 82 642-730 4-92 (256)
461 PRK00094 gpsA NAD(P)H-dependen 38.4 1.4E+02 0.003 33.2 9.0 40 383-428 2-41 (325)
462 PRK00811 spermidine synthase; 38.1 1E+02 0.0022 34.2 7.7 81 641-729 76-158 (283)
463 PLN02260 probable rhamnose bio 38.0 95 0.0021 38.6 8.3 83 642-731 6-90 (668)
464 PRK07878 molybdopterin biosynt 38.0 3.2E+02 0.007 31.8 12.1 36 381-421 41-76 (392)
465 COG0300 DltE Short-chain dehyd 38.0 72 0.0016 35.1 6.3 84 640-731 4-94 (265)
466 PRK10750 potassium transporter 37.9 83 0.0018 37.7 7.4 38 296-334 190-227 (483)
467 TIGR02622 CDP_4_6_dhtase CDP-g 37.8 95 0.0021 35.0 7.7 78 383-469 5-84 (349)
468 PRK06935 2-deoxy-D-gluconate 3 37.8 1.2E+02 0.0026 32.3 8.1 79 382-469 15-100 (258)
469 PRK08416 7-alpha-hydroxysteroi 37.6 1.1E+02 0.0024 32.7 7.8 66 383-455 9-76 (260)
470 PRK06841 short chain dehydroge 37.6 1.9E+02 0.0041 30.5 9.6 78 642-731 15-99 (255)
471 COG1282 PntB NAD/NADP transhyd 37.5 1.2E+02 0.0026 34.7 7.9 58 412-470 357-427 (463)
472 PF03807 F420_oxidored: NADP o 37.4 53 0.0012 29.4 4.5 80 644-749 1-81 (96)
473 PRK05557 fabG 3-ketoacyl-(acyl 37.4 1.3E+02 0.0027 31.4 8.1 79 383-469 6-92 (248)
474 PRK08278 short chain dehydroge 37.4 1.2E+02 0.0025 32.9 8.0 79 383-469 7-99 (273)
475 PRK07097 gluconate 5-dehydroge 37.3 2.9E+02 0.0062 29.5 11.0 81 642-731 10-97 (265)
476 PRK06181 short chain dehydroge 37.2 90 0.0019 33.3 7.0 78 643-731 2-88 (263)
477 PRK00045 hemA glutamyl-tRNA re 36.9 57 0.0012 38.3 5.8 70 641-730 181-251 (423)
478 PRK05086 malate dehydrogenase; 36.9 3E+02 0.0066 30.9 11.4 75 383-470 1-79 (312)
479 PRK13940 glutamyl-tRNA reducta 36.8 73 0.0016 37.4 6.6 71 642-731 181-252 (414)
480 COG0421 SpeE Spermidine syntha 36.8 1.3E+02 0.0028 33.4 8.2 98 643-755 78-177 (282)
481 PRK13302 putative L-aspartate 36.8 60 0.0013 35.7 5.6 70 643-730 7-76 (271)
482 PRK07889 enoyl-(acyl carrier p 36.7 73 0.0016 34.2 6.2 79 642-730 7-94 (256)
483 PRK15204 undecaprenyl-phosphat 36.6 3.2E+02 0.0069 32.7 12.1 38 382-421 146-183 (476)
484 PRK09853 putative selenate red 36.5 53 0.0012 42.8 5.8 35 640-677 537-571 (1019)
485 PRK05708 2-dehydropantoate 2-r 36.5 3.7E+02 0.008 29.9 12.0 41 382-428 2-42 (305)
486 PRK05866 short chain dehydroge 36.5 91 0.002 34.4 7.1 81 642-731 40-127 (293)
487 TIGR02356 adenyl_thiF thiazole 36.5 1.3E+02 0.0028 31.5 7.8 34 641-677 20-54 (202)
488 PRK08303 short chain dehydroge 36.5 1.1E+02 0.0025 33.9 7.9 33 382-420 8-41 (305)
489 PRK07890 short chain dehydroge 36.4 81 0.0017 33.4 6.5 81 642-731 5-92 (258)
490 PRK06483 dihydromonapterin red 36.4 3.3E+02 0.0071 28.4 11.1 76 642-731 2-84 (236)
491 PRK08177 short chain dehydroge 36.4 88 0.0019 32.6 6.7 73 383-468 2-79 (225)
492 PRK05650 short chain dehydroge 36.2 2.3E+02 0.0049 30.4 10.0 79 644-731 2-87 (270)
493 PRK12743 oxidoreductase; Provi 36.2 1.4E+02 0.0029 31.9 8.2 79 383-469 3-89 (256)
494 PRK12825 fabG 3-ketoacyl-(acyl 36.1 1.3E+02 0.0027 31.3 7.9 79 383-469 7-93 (249)
495 PRK09134 short chain dehydroge 36.1 1.4E+02 0.0029 31.8 8.2 80 382-469 9-96 (258)
496 PRK06179 short chain dehydroge 36.0 68 0.0015 34.4 5.9 72 643-731 5-83 (270)
497 PRK05872 short chain dehydroge 36.0 2.9E+02 0.0063 30.3 11.0 79 642-731 9-95 (296)
498 PRK12721 secretion system appa 36.0 5.9E+02 0.013 29.3 13.5 52 254-309 106-157 (349)
499 PRK12937 short chain dehydroge 35.9 1.3E+02 0.0028 31.5 7.9 80 382-469 5-92 (245)
500 PRK07856 short chain dehydroge 35.8 1.6E+02 0.0036 31.1 8.8 93 641-751 5-105 (252)
No 1
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=100.00 E-value=1.8e-36 Score=352.71 Aligned_cols=426 Identities=16% Similarity=0.159 Sum_probs=330.3
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
+||+|||+|..+..+++.|.. .++.|+++|.+++.++...+ ..++.++.||+++.+.|+++++++|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~------~g~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG------ENNDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence 489999999999999999865 25788999999987775432 13578899999999999999999999
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCC---HHHH--HHcCCCeEEEechHHHHHHHHHHHHh
Q 002491 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN---EPLV--KLVGGELIETVVAHDVIGRLMIQCAL 537 (916)
Q Consensus 463 aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~---~~~l--~~~Gad~VevV~p~~l~a~lLa~~~~ 537 (916)
.+|+++++ |..|+.++..+|.++| ..++|+++.+.++ ...+ +.+|++. +|+|+.+.|..|++.+.
T Consensus 68 ~vi~~~~~------~~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~~~l~~~~~~G~~~--vi~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 68 LLIAVTDS------DETNMVACQIAKSLFG--APTTIARVRNPEYAEYDKLFSKEALGIDL--LISPELLVAREIARLIE 137 (453)
T ss_pred EEEEecCC------hHHHHHHHHHHHHhcC--CCeEEEEECCccccchhhhhhhhcCCccE--EECHHHHHHHHHHHHhc
Confidence 99999976 8899999999999987 5689999988776 3333 6689998 49999999999999999
Q ss_pred cCcHHHHHHHHhccCC---ceEEEecCCCcCCCcHHhHhhh-C-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEE
Q 002491 538 QPGLAQIWEDILGFEN---AEFYIKRWPQLDDLRFEEVVIS-F-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVI 612 (916)
Q Consensus 538 ~Pg~~~vl~~Ll~~~g---~ei~v~~~p~l~G~tf~el~~~-~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVI 612 (916)
.|+...++. + .... .++.+.+.+++.|+++.|+..+ . +++.++++.| +|+ .+.|+++++|++||+|+++
T Consensus 138 ~~~~~~~~~-~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r---~~~-~~~p~~~~~l~~gD~l~v~ 211 (453)
T PRK09496 138 YPGALDVEE-F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR---GGR-LIIPRGDTVIEAGDEVYFI 211 (453)
T ss_pred CCCceEeee-e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE---CCE-EEcCCCCcEecCCCEEEEE
Confidence 999876543 1 1111 2344445578999999999865 3 5899999987 455 4689999999999999999
Q ss_pred EeCCCCCCCCCCccccccccccCCCCCCCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCC
Q 002491 613 AEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD 692 (916)
Q Consensus 613 g~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~ 692 (916)
|+.+++.++... ........+|++|||||+.|..+++.|.+. |.++++++.++ ++.+.+.+.
T Consensus 212 g~~~~l~~~~~~----------~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vid~~~--~~~~~~~~~--- 273 (453)
T PRK09496 212 GAREHIRAVMSE----------FGRLEKPVKRVMIVGGGNIGYYLAKLLEKE---GYSVKLIERDP--ERAEELAEE--- 273 (453)
T ss_pred eCHHHHHHHHHH----------hCccCCCCCEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCH--HHHHHHHHH---
Confidence 999876654311 111223478999999999999999999864 88999999754 566666542
Q ss_pred ccCcCCceEEEEEcCcCCHhHHhcCCCCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCcccccc
Q 002491 693 ISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLS 772 (916)
Q Consensus 693 ~~~l~~~~v~~i~GD~t~~~~L~~a~I~~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~ 772 (916)
+.+ +.++.||+++.+.|+++++++||++|++++ +|..|+.+.+.+|.++.+
T Consensus 274 ---~~~--~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~---------~~~~n~~~~~~~~~~~~~--------------- 324 (453)
T PRK09496 274 ---LPN--TLVLHGDGTDQELLEEEGIDEADAFIALTN---------DDEANILSSLLAKRLGAK--------------- 324 (453)
T ss_pred ---CCC--CeEEECCCCCHHHHHhcCCccCCEEEECCC---------CcHHHHHHHHHHHHhCCC---------------
Confidence 123 456899999999999999999999998874 367899999999988643
Q ss_pred CCCcchhhHHhhhcCCcceEEEEEecccchhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhcc--cCceEEE
Q 002491 773 GFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE--EGNEMCI 850 (916)
Q Consensus 773 ~~~~~~~i~kl~ra~~~~~IisEi~d~~~~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~~--eG~el~i 850 (916)
+++++..++++...++..|++.++.+..+.+..+++....|++..++. +.+. +..++.+
T Consensus 325 ------------------~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v 385 (453)
T PRK09496 325 ------------------KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRRGDIVAVHS-LRRGAAEAIEAVA 385 (453)
T ss_pred ------------------eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhccchhhhhh-hcCCcEEEEEEEe
Confidence 689999999999999988866555556677899999999998877664 2221 1112222
Q ss_pred EcCcccccCCCCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecCC
Q 002491 851 KPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSGD 916 (916)
Q Consensus 851 ~~~~~~~~~~~~ltf~dl~~~~r~~g~ilIGi~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~~ 916 (916)
.+-+. -.+.++.++. ...|..++|+.+++ +. ++|++ ++.+++||.|+++++.+
T Consensus 386 ~~~s~----~~g~~l~el~---l~~~~~i~~i~r~~--~~-~~p~~---~~~l~~gD~l~v~~~~~ 438 (453)
T PRK09496 386 HETSK----VVGKPLKDLK---LPKGVLIGAIVRGG--EV-IIPTG---DTVIEPGDHVIVFVLDK 438 (453)
T ss_pred CCCCh----hccCCHHHcC---CCCCCEEEEEEECC--EE-EcCCC---CcEECCCCEEEEEEcCc
Confidence 22222 2456677773 23599999998854 44 77876 89999999999999753
No 2
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-37 Score=338.83 Aligned_cols=601 Identities=17% Similarity=0.248 Sum_probs=408.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC-------------CCHHHHHHHHHhhhhccCCCCCc-CCccCceeeeeehhhhHHHH
Q 002491 289 LALLFATIFLIIFGGLALYAVSD-------------SSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIF 354 (916)
Q Consensus 289 l~ll~~~l~li~~g~l~~~~ie~-------------~s~~dA~y~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~if 354 (916)
..|+.+.+.+.+.++.+.+.+|+ .++++++|+.++|++|+||||.- .+..||+|.++++++|+.+|
T Consensus 251 ~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamf 330 (1103)
T KOG1420|consen 251 VQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMF 330 (1103)
T ss_pred HHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHH
Confidence 33444455556666666666652 47899999999999999999986 78899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCc-ccccccceEEEEecch--hHHHHHHHHHHhcccCCCCceEEEEcCChH-HHHHHHHh
Q 002491 355 AMMLGLVSDAISEKVDSLRKGK-SEVIEKNHILILGWSD--KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAK 430 (916)
Q Consensus 355 a~~ig~it~~i~~~l~~lr~G~-~~~~~~~HIII~G~g~--~~~~ll~eL~~~~~~~~~~~iVVLid~d~e-~ve~~l~~ 430 (916)
+.-+.-|.+.+.++ .++- |. .....+.||||||+-. .+..+++.+.+.+...-.-.+|.+-...|+ ++|.+..+
T Consensus 331 asyvpeiielignr-~kyg-geyk~ehgkkhivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfkr 408 (1103)
T KOG1420|consen 331 ASYVPEIIELIGNR-KKYG-GEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKR 408 (1103)
T ss_pred HhhhHHHHHHHccc-cccC-ceeehhcCCeeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhh
Confidence 99999888888775 1111 22 2346789999999864 467778887765431111123334444443 45554433
Q ss_pred hhcccCCccEEEEEECCCCHHHHhccCcccccEEEEecCC--CCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCH
Q 002491 431 LEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNE 508 (916)
Q Consensus 431 ~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~aVIiltdd--~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~ 508 (916)
.-+.|.+.+|..+++-+|.|+.+++||++.++++. .+++.+|+.|++.++++|++.| ++++|.++..-.|+
T Consensus 409 -----hft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanimrvisiknys~--dirvi~qlmqyhnk 481 (1103)
T KOG1420|consen 409 -----HFTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSP--DIRVITQLMQYHNK 481 (1103)
T ss_pred -----heeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhheEEEEeccCCC--chhHHHHHHHhhch
Confidence 23679999999999999999999999999999998 4889999999999999999998 67789888777776
Q ss_pred HHHHHc------CCCeEEEechHHHHHHHHHHHHhcCcHHHHHHHHhccC-------------------CceEEEecC-C
Q 002491 509 PLVKLV------GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE-------------------NAEFYIKRW-P 562 (916)
Q Consensus 509 ~~l~~~------Gad~VevV~p~~l~a~lLa~~~~~Pg~~~vl~~Ll~~~-------------------g~ei~v~~~-p 562 (916)
.++... .+|. +||-.++.-..+||+|+.||+++.+.+|+.-. |.|.|.+.. |
T Consensus 482 ayllnipswdwk~gdd--viclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~lsp 559 (1103)
T KOG1420|consen 482 AYLLNIPSWDWKEGDD--VICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLSP 559 (1103)
T ss_pred heeecCCCcccccCCc--eEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcCH
Confidence 665431 2343 48889999999999999999999999987421 356676665 4
Q ss_pred CcCCCcHHhHhhh-C--CCeEEEEEEEeec---CCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC--------------
Q 002491 563 QLDDLRFEEVVIS-F--PDAIPCGIKVAAE---GGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG-------------- 622 (916)
Q Consensus 563 ~l~G~tf~el~~~-~--~~~ivIGI~r~~~---~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~~-------------- 622 (916)
.++|++|.++... | -+..+++|...++ +.++.+||.+..+|++|..-++|+.+.+..+.+
T Consensus 560 ~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgffiaqsadevkraffyckachddikd~ 639 (1103)
T KOG1420|consen 560 AFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGFFIAQSADEVKRAFFYCKACHDDIKDP 639 (1103)
T ss_pred hhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceEEEecchHHHHHHHhhHHhhhhcccCH
Confidence 6999999987653 3 3678888875422 346899999999999999999999976542210
Q ss_pred ------CC------------ccccc--c--------------c----ccc--------------C--------C------
Q 002491 623 ------PL------------PEVCK--R--------------S----FLK--------------I--------P------ 636 (916)
Q Consensus 623 ------~~------------p~v~~--~--------------~----~~~--------------~--------~------ 636 (916)
.| |+..+ + + ++. . +
T Consensus 640 ~likkckckn~k~~q~~~ls~~~k~~ngg~k~~p~~sp~~~r~~ts~~~g~~~~~~f~~~~mkydstgmfhwcp~k~led 719 (1103)
T KOG1420|consen 640 KLIKKCKCKNLKDEQPSTLSPKKKQRNGGMKNSPNTSPKLMRHDTSLIPGNDQIDNFDSHVMKYDSTGMFHWCPPKELED 719 (1103)
T ss_pred HHHHhcCCCcccccCchhcCccccCCCCCccCCCCCCHHHhcCCcccCCCCcchhhhhhhhhccccccceeecCchhHHH
Confidence 00 11000 0 0 000 0 0
Q ss_pred --------CCCCCCCeEEEEcccccHH------HHHHHHHHhc--C-CCCeEEEEccCChHHHHHHhhcCCCCccCcCCc
Q 002491 637 --------DPPKYPEKILFCGWRRDID------DMIMVLEAFL--A-PGSELWMLNEVPEKEREKKLTDGGLDISGLMNI 699 (916)
Q Consensus 637 --------~~~~~~~hilI~Gwg~~~~------~li~~L~~~~--~-~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~ 699 (916)
...-..+|+++|=+++.-. .++.-|++.. . .=.+|+++.....- | +++.- ...++.
T Consensus 720 cil~r~qaamtvlnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsieyl-r-rewkt----l~nlpk- 792 (1103)
T KOG1420|consen 720 CILTRSQAAMTVLNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSIEYL-R-REWKT----LHNLPK- 792 (1103)
T ss_pred HhhhhhHhhheeecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccHHHH-H-HHHHH----HhCCCc-
Confidence 0112367999998887532 3444443210 0 01367777754322 2 22221 112444
Q ss_pred eEEEEEcCcCCHhHHhcCCCCCccEEEEecCCC-CcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcch
Q 002491 700 KLVHREGNAVIRRHLESLPLETFDSILILADES-LEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSS 778 (916)
Q Consensus 700 ~v~~i~GD~t~~~~L~~a~I~~adavIilad~~-~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 778 (916)
+.++.|.|.++.+|+.++|.-+|.++|++..- -.+++.-+|.+.+++.|-+|.++-+.. ..+.|++..++...+
T Consensus 793 -isilngsplsradlravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddt----igvl~~r~q~fd~~s 867 (1103)
T KOG1420|consen 793 -ISILNGSPLSRADLRAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDT----IGVLQARSQGFDPPS 867 (1103)
T ss_pred -eeecCCCCCchhhhhhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccc----eeeeeccCCCCCCCC
Confidence 66789999999999999999999999998643 345678899999999999999886531 223333222221110
Q ss_pred hh----HHhhh----cCCcceEEEEEecccchhhhhccCCCc-----EE---------ecHHHHHHHHHHHHhhhhHHHH
Q 002491 779 WI----REMQQ----ASDKSIIISEILDSRTRNLVSVSRISD-----YV---------LSNELVSMALAMVAEDKQINRV 836 (916)
Q Consensus 779 ~i----~kl~r----a~~~~~IisEi~d~~~~~ll~~ag~~d-----~V---------~S~~lvs~~lA~~a~~p~v~~v 836 (916)
.. -.++| -+.++.+|+|+.+..|.+.+.+...+| |+ .+-.++..+|.....+.+...+
T Consensus 868 sp~gspi~lq~~g~~~g~nvpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltl 947 (1103)
T KOG1420|consen 868 SPDGSPIHLQQPGITTGVNVPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTL 947 (1103)
T ss_pred CCCCCCeEEecCCcccccCchhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHH
Confidence 00 01222 244689999999999999998864333 11 1223455666666677666666
Q ss_pred HHHHhcc-----------cCc----------------eEEEEcCcccc----cCCCCccHHHHHHHhccC-CcEEEE-EE
Q 002491 837 LEELFAE-----------EGN----------------EMCIKPAEFYL----FDQEEISFFDIMIRGRQR-QEIVIG-YR 883 (916)
Q Consensus 837 l~eLl~~-----------eG~----------------el~i~~~~~~~----~~~~~ltf~dl~~~~r~~-g~ilIG-i~ 883 (916)
++.|.+. ||. ...+-.++.+- .-+.+-+|++++..+.++ |-.||| ||
T Consensus 948 irtlvtggatpelelilaegaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlciglyr 1027 (1103)
T KOG1420|consen 948 IRTLVTGGATPELELILAEGAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGLYR 1027 (1103)
T ss_pred HHHHHhCCCChhhHHHHhccccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEEee
Confidence 6655431 221 12222222221 125677999999888665 999999 67
Q ss_pred eCCCC---------cEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 884 LANTE---------RAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 884 ~~~g~---------~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
.++.. .++.|||. ++.+.+.|.++|+...
T Consensus 1028 lrd~~~s~~~s~kryvitnpp~---ef~l~ptd~vfvlmqf 1065 (1103)
T KOG1420|consen 1028 LRDAHLSTSQSTKRYVITNPPY---EFELVPTDLVFVLMQF 1065 (1103)
T ss_pred eeccccCcchhhceeEecCCch---hheecccceEEEEEee
Confidence 66531 37899998 8999999999999753
No 3
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=1.8e-29 Score=286.16 Aligned_cols=232 Identities=20% Similarity=0.240 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHHHHH-
Q 002491 292 LFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSD- 363 (916)
Q Consensus 292 l~~~l~li~~g~l~~~~ie~------~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~it~- 363 (916)
++.+..+++.|+++++++++ .+++|||||+++|+||+||||. |.+..||+|+++++++|+++|++.++.++.
T Consensus 141 ~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p 220 (393)
T PRK10537 141 VISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP 220 (393)
T ss_pred HHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777764 6999999999999999999997 478889999999999999999998887654
Q ss_pred HHHHHHHhhhcCcc-cccccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEE
Q 002491 364 AISEKVDSLRKGKS-EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVIC 442 (916)
Q Consensus 364 ~i~~~l~~lr~G~~-~~~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~ 442 (916)
.+.+++++..+++. ....+||+||||||+.+..++++|.+. +.+|+++|.|+. ++.. ..++.+
T Consensus 221 ~i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~~--~~~~--------~~g~~v 284 (393)
T PRK10537 221 VIRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLGL--EHRL--------PDDADL 284 (393)
T ss_pred HHHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHC------CCCEEEEECchh--hhhc--------cCCCcE
Confidence 55555555433332 234589999999999999999998642 467888887632 2221 234678
Q ss_pred EEECCCCHHHHhccCcccccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEe
Q 002491 443 RSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETV 522 (916)
Q Consensus 443 i~GD~t~~e~L~rAgi~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV 522 (916)
+.||++++++|++||+++|+++|++++| |++|+.+++++|+++| +.+|||++.++++.++++.+|+|. +|
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~d------D~~Nl~ivL~ar~l~p--~~kIIa~v~~~~~~~~L~~~GaD~--VI 354 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRDN------DADNAFVVLAAKEMSS--DVKTVAAVNDSKNLEKIKRVHPDM--IF 354 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCCC------hHHHHHHHHHHHHhCC--CCcEEEEECCHHHHHHHHhcCCCE--EE
Confidence 9999999999999999999999999977 9999999999999998 678999999999999999999998 49
Q ss_pred chHHHHHHHHHHHHhcCcHH-HHHHHHh
Q 002491 523 VAHDVIGRLMIQCALQPGLA-QIWEDIL 549 (916)
Q Consensus 523 ~p~~l~a~lLa~~~~~Pg~~-~vl~~Ll 549 (916)
+|.++.++.|++.+..+.+. +.+.+++
T Consensus 355 sp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 355 SPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999998776554 4555555
No 4
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.92 E-value=9.6e-25 Score=213.11 Aligned_cols=200 Identities=51% Similarity=0.832 Sum_probs=171.3
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHhcCc
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~~Pg 540 (916)
|++||++..+.+.+++|++++..+|++..+..+...|+|+++.+.++.++++..|+..|+.| +++++++|.||+++||
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV--~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETV--HDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeH--HHHHHHHHHHhccCcc
Confidence 78999999998999999999999999998877777899999999999999999999998877 8999999999999999
Q ss_pred HHHHHHHHhccCCceEEEecCCCcCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 002491 541 LAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (916)
Q Consensus 541 ~~~vl~~Ll~~~g~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~ 620 (916)
+.++|+++++++.++||+..||.+.|++|.|+++.|+++++|||.| +|++.+||++|+++++||+++|||+.+.-..
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r---~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~~ 155 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKR---DGKIVFHPDDDYVLREGDKLLVIAPVNGKRP 155 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeee---CCeeEECCCCCceeecCCEEEEEeecCCccc
Confidence 9999999999999999999999999999999999999999999997 5899999999999999999999999876422
Q ss_pred CCCCccccccccccCCCCCCCCCeEEEEcccccHHHHHHHHHHhcCCCC
Q 002491 621 PGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGS 669 (916)
Q Consensus 621 ~~~~p~v~~~~~~~~~~~~~~~~hilI~Gwg~~~~~li~~L~~~~~~g~ 669 (916)
-...+.+... +.. .++...+.++|+|..+...++....+.+..++
T Consensus 156 ~~~~~~v~~~---n~~-~~~~~~~~~~e~~k~rl~nivkrp~kslsk~S 200 (206)
T PF06241_consen 156 QTAYPSVRME---NIT-SPEDVRKHAFELWKTRLENIVKRPNKSLSKGS 200 (206)
T ss_pred eEeccccccc---ccc-CCCchhhhhhhhhHhHHHHHHhCccccccccc
Confidence 1112333221 111 22344567899999999999988876544443
No 5
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.4e-22 Score=212.97 Aligned_cols=214 Identities=19% Similarity=0.239 Sum_probs=180.8
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
+.++|+|.|+++..+++.|.. .|+.|+++|.|++.++..... ..++.+++||++++++|++||+++||
T Consensus 1 m~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCC
Confidence 368999999999999999975 368999999999988874431 24688999999999999999999999
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHhcCcHH
Q 002491 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (916)
Q Consensus 463 aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~~Pg~~ 542 (916)
++|+++++ |..|+..|..+++.+. .+++||+++++++.+.+++.|++. +|+|+...+..+++.+..|++.
T Consensus 69 ~vva~t~~------d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g~~~--ii~Pe~~~~~~l~~~i~~p~~~ 138 (225)
T COG0569 69 AVVAATGN------DEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLGADV--IISPEKLAAKRLARLIVTPGAL 138 (225)
T ss_pred EEEEeeCC------CHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcCCcE--EECHHHHHHHHHHHHhcCCChh
Confidence 99999977 9999999998887543 478999999999999999999998 5999999999999999999999
Q ss_pred HHHHHHhcc-CCceEEEecCCCcCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 002491 543 QIWEDILGF-ENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (916)
Q Consensus 543 ~vl~~Ll~~-~g~ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~ 620 (916)
+++...-+. +..++.+.+.+++.|++++|+..++ +++++++|.|. +...+.|.++++|++||+++++|..+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~---~~~~~~p~g~~~l~~gD~l~v~~~~~~i~~ 215 (225)
T COG0569 139 DVLELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKRG---GNELIIPRGDTTLEAGDRLIVIGAPEALRE 215 (225)
T ss_pred eEEeecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEecC---CCceecCCCCCEecCCCEEEEEEcHHHHHH
Confidence 987632111 1123444445689999999999665 68999999973 326789999999999999999999987765
Q ss_pred C
Q 002491 621 P 621 (916)
Q Consensus 621 ~ 621 (916)
+
T Consensus 216 ~ 216 (225)
T COG0569 216 V 216 (225)
T ss_pred H
Confidence 4
No 6
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.8e-21 Score=214.89 Aligned_cols=319 Identities=13% Similarity=0.166 Sum_probs=231.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhc-----CCCHHHHHHHHHhhhhccCCCCCc-CCccCceeeeeehhhhHHHHHHHH
Q 002491 285 YAKLLALLFATIFLIIFGGLALYAVS-----DSSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMML 358 (916)
Q Consensus 285 ~~~ll~ll~~~l~li~~g~l~~~~ie-----~~s~~dA~y~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~ifa~~i 358 (916)
+++++.|...++++++.|.+..-.+. ..++|.++|++++|++|+||||.. .-|+.++..++++.+.++++...+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 45556666667888888888776653 368999999999999999999974 567888888888877777765554
Q ss_pred HHHHHHHHHHHHhhhcCcc--cc-cccceEEEEecch---hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhh-
Q 002491 359 GLVSDAISEKVDSLRKGKS--EV-IEKNHILILGWSD---KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKL- 431 (916)
Q Consensus 359 g~it~~i~~~l~~lr~G~~--~~-~~~~HIII~G~g~---~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~- 431 (916)
.-+...-.+ +-+.|.. .. ..+.|+|||--.- ....+++|+....+ . ....||+.. |.+++...+-+
T Consensus 264 ~~l~~tw~e---rqk~g~~~ss~~~~e~hvvv~~ttl~~~~i~dfl~efyahp~-~-q~~~ivlls--p~eld~~~rmll 336 (1087)
T KOG3193|consen 264 DELGQTWSE---RQKSGTDFSSWNGVESHVVVTITTLEVEFIRDFLEEFYAHPE-N-QRIQIVLLS--PAELDNQTRMLL 336 (1087)
T ss_pred HHHHHHHHH---HhhcCCCccccccccceEEEEEeeeeHHHHHHHHHHHhcCcc-c-ccEEEEEec--hHHhcchhhhhe
Confidence 444332222 2333432 11 2467999997653 45566777764322 1 223333332 33333332211
Q ss_pred hcccCCccEEEEEECCCCHHHHhccCcccccEEEEecCCC--CCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHH
Q 002491 432 EFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (916)
Q Consensus 432 ~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~aVIiltdd~--~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (916)
...+++.+|.+++|+....++|+||++..|+++++++..+ +-...|+.+++..+++|.+.| +++-.+++..++.+-
T Consensus 337 kiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfap--nv~qyvqifr~e~k~ 414 (1087)
T KOG3193|consen 337 KIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAP--NVKQYVQIFRAETKM 414 (1087)
T ss_pred eccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCC--chHHHhhhhchhhhh
Confidence 2456788999999999999999999999999999998763 345679999999999999999 455677777777766
Q ss_pred HHHHcCCCeEEEechHHHHHHHHHHHHhcCcHHHHHHHHhcc--------------------CCceEEEecC------CC
Q 002491 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF--------------------ENAEFYIKRW------PQ 563 (916)
Q Consensus 510 ~l~~~Gad~VevV~p~~l~a~lLa~~~~~Pg~~~vl~~Ll~~--------------------~g~ei~v~~~------p~ 563 (916)
+.+ .++. +||.+++.-.++|+.|.+||+++++.-|+.. .|+|+|-... .+
T Consensus 415 hi~--~ae~--~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~e 490 (1087)
T KOG3193|consen 415 HIE--HAEV--LICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCE 490 (1087)
T ss_pred hhh--hhee--EEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeee
Confidence 655 3344 5899999999999999999999999877742 1467765442 47
Q ss_pred cCCCcHHhHhhh---CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCC
Q 002491 564 LDDLRFEEVVIS---FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDD 616 (916)
Q Consensus 564 l~G~tf~el~~~---~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~ 616 (916)
++|++|....++ .+|+-++|+..+....++.+||++..++++.|.+|++|-.+
T Consensus 491 y~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 491 YVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred ecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 899999987764 26899999974322345889999999999999999998653
No 7
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.84 E-value=1.2e-19 Score=211.69 Aligned_cols=213 Identities=18% Similarity=0.193 Sum_probs=180.0
Q ss_pred cccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcc
Q 002491 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (916)
Q Consensus 380 ~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~ 459 (916)
...+|+||||+|+.+..+++.|.. .++.|+++|.+++.++...++ ..++.++.||+++++.|++++++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~------~~~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEK------EGYSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh------CCCeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCc
Confidence 347999999999999999999865 257899999999887765432 23577899999999999999999
Q ss_pred cccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHhcC
Q 002491 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQP 539 (916)
Q Consensus 460 ~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~~P 539 (916)
+|+.+|+++++ |..|+.+++.++++++ .++|+++.++++.+.++.+|++. +++|+.+.++.+++.+..|
T Consensus 297 ~a~~vi~~~~~------~~~n~~~~~~~~~~~~---~~ii~~~~~~~~~~~~~~~g~~~--vi~p~~~~~~~~~~~~~~~ 365 (453)
T PRK09496 297 EADAFIALTND------DEANILSSLLAKRLGA---KKVIALVNRPAYVDLVEGLGIDI--AISPRQATASEILRHVRRG 365 (453)
T ss_pred cCCEEEECCCC------cHHHHHHHHHHHHhCC---CeEEEEECCcchHHHHHhcCCCE--EECHHHHHHHHHHHHhhcc
Confidence 99999999976 8899999999999875 48999999999999999999998 4899999999999999999
Q ss_pred cHHHHHHHHhcc--CCceEEEecCCCcCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCC
Q 002491 540 GLAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDD 617 (916)
Q Consensus 540 g~~~vl~~Ll~~--~g~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~ 617 (916)
++..++.. ... +..++.+.+.+++.|++++|+... .++.++++.| +|+. ++|+++++|++||.++++|+.++
T Consensus 366 ~~~~~~~~-~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r---~~~~-~~p~~~~~l~~gD~l~v~~~~~~ 439 (453)
T PRK09496 366 DIVAVHSL-RRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVR---GGEV-IIPTGDTVIEPGDHVIVFVLDKK 439 (453)
T ss_pred chhhhhhh-cCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEE---CCEE-EcCCCCcEECCCCEEEEEEcCcc
Confidence 98776542 211 224566666789999999999753 4899999987 4666 78999999999999999999998
Q ss_pred -CCCC
Q 002491 618 -TYAP 621 (916)
Q Consensus 618 -~~~~ 621 (916)
+.++
T Consensus 440 ~~~~~ 444 (453)
T PRK09496 440 FVPDV 444 (453)
T ss_pred hHHHH
Confidence 6543
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.70 E-value=3e-16 Score=187.93 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=125.9
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
.+||+||||+|+.+..++++|.+. +++|+++|+|+++++...+ .++.++.||++++++|+++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccc
Confidence 479999999999999999999753 5899999999988876632 36789999999999999999999
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHhcCc
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~~Pg 540 (916)
|++++++++| |.+|..++.++|+.+| +.+|+||++++++.+.++++|+|+| |+|++..++.+++.+..|+
T Consensus 482 a~~viv~~~~------~~~~~~iv~~~~~~~~--~~~iiar~~~~~~~~~l~~~Gad~v--v~p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 482 ARWLLLTIPN------GYEAGEIVASAREKRP--DIEIIARAHYDDEVAYITERGANQV--VMGEREIARTMLELLETPP 551 (558)
T ss_pred cCEEEEEcCC------hHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHcCCCEE--EChHHHHHHHHHHHhcCCC
Confidence 9999999977 7788888888899888 6789999999999999999999984 9999999999999999999
Q ss_pred HHHHH
Q 002491 541 LAQIW 545 (916)
Q Consensus 541 ~~~vl 545 (916)
..++.
T Consensus 552 ~~~~~ 556 (558)
T PRK10669 552 AGEVV 556 (558)
T ss_pred ccccc
Confidence 88764
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.63 E-value=8.1e-15 Score=176.57 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=113.3
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
.++|+||||+|+.+..+++.|.. .+++|+++|.|++.++...+ .+..++.||+++++.|++||+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~------~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMA------NKMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHh------CCCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCcc
Confidence 47899999999999989988864 35899999999998886632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHh
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~ 537 (916)
|+++|++++| |+.|+.++..+|+++| +.+|+||++|+++.+.++++|+|.| +...-..+..+++.+.
T Consensus 465 A~~vv~~~~d------~~~n~~i~~~~r~~~p--~~~IiaRa~~~~~~~~L~~~Ga~~v--v~e~~es~l~l~~~~L 531 (601)
T PRK03659 465 AEAIVITCNE------PEDTMKIVELCQQHFP--HLHILARARGRVEAHELLQAGVTQF--SRETFSSALELGRKTL 531 (601)
T ss_pred CCEEEEEeCC------HHHHHHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHhCCCCEE--EccHHHHHHHHHHHHH
Confidence 9999999987 9999999999999999 6789999999999999999999973 4443445566655443
No 10
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.61 E-value=6.3e-15 Score=139.67 Aligned_cols=116 Identities=22% Similarity=0.365 Sum_probs=101.2
Q ss_pred EEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccEE
Q 002491 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (916)
Q Consensus 385 III~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~aV 464 (916)
|||||||+.+..++++|... +..|+++|.|++.++.+.+ .++.++.||++++++|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEE
Confidence 79999999999999999862 3689999999988887644 236789999999999999999999999
Q ss_pred EEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEech
Q 002491 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVA 524 (916)
Q Consensus 465 Iiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p 524 (916)
|+++++ |..|+.+++.+|+++| ..++++++.++++.+.++.+|+|.| |.|
T Consensus 67 v~~~~~------d~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~l~~~g~d~v--i~P 116 (116)
T PF02254_consen 67 VILTDD------DEENLLIALLARELNP--DIRIIARVNDPENAELLRQAGADHV--ISP 116 (116)
T ss_dssp EEESSS------HHHHHHHHHHHHHHTT--TSEEEEEESSHHHHHHHHHTT-SEE--EEH
T ss_pred EEccCC------HHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHCCcCEE--ECc
Confidence 999977 9999999999999998 6789999999999999999999984 655
No 11
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.5e-14 Score=150.68 Aligned_cols=208 Identities=17% Similarity=0.155 Sum_probs=155.6
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002491 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (916)
Q Consensus 644 hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ad 723 (916)
+++|+|.|+.|..+++.|.+. |-.+++|+.+ +++++.... +....+.++||++++++|++||+++||
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~d--~~~~~~~~~--------~~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE---GHNVVLIDRD--EERVEEFLA--------DELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC---CCceEEEEcC--HHHHHHHhh--------hhcceEEEEecCCCHHHHHhcCCCcCC
Confidence 689999999999999999864 7889999974 467666322 123356789999999999999999999
Q ss_pred EEEEecCCCCcCccccCcHHHHHHHHHHHH-hcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEecccch
Q 002491 724 SILILADESLEDSIVHSDSRSLATLLLIRD-IQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTR 802 (916)
Q Consensus 724 avIilad~~~~~~~~~~Da~~l~t~L~~r~-l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~~~~ 802 (916)
++|+++++ |..|+..++++++ ++.+ ++|+++.++.+.
T Consensus 69 ~vva~t~~---------d~~N~i~~~la~~~~gv~---------------------------------~viar~~~~~~~ 106 (225)
T COG0569 69 AVVAATGN---------DEVNSVLALLALKEFGVP---------------------------------RVIARARNPEHE 106 (225)
T ss_pred EEEEeeCC---------CHHHHHHHHHHHHhcCCC---------------------------------cEEEEecCHHHH
Confidence 99999864 5567666666655 5543 689999999999
Q ss_pred hhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhcccCceEEEEcCcccccCCCCccHHHHHHHhccCCcEEEEE
Q 002491 803 NLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGY 882 (916)
Q Consensus 803 ~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~~eG~el~i~~~~~~~~~~~~ltf~dl~~~~r~~g~ilIGi 882 (916)
+.++..|++..+.+....+..+++....|++..++. +.+....-+.+.-.+. .+..+.+..|+..+ ...+.+++++
T Consensus 107 ~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~-~~~~~~~~~~~~v~~~--~~~~g~~L~el~~~-~~~~~~vvai 182 (225)
T COG0569 107 KVLEKLGADVIISPEKLAAKRLARLIVTPGALDVLE-LAGGDAEVIEEKVAED--SPLAGKTLRELDLR-LPYDVNVIAI 182 (225)
T ss_pred HHHHHcCCcEEECHHHHHHHHHHHHhcCCChheEEe-ecCCcceEEEEEecCC--CccCCcCHHHhccc-CCCCcEEEEE
Confidence 999998866666666777999999999999988775 3322222233322221 12346666777621 2358999999
Q ss_pred EeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 883 RLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 883 ~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
.+++. .++.|++ ++.+++||++++++..
T Consensus 183 ~r~~~--~~~~p~g---~~~l~~gD~l~v~~~~ 210 (225)
T COG0569 183 KRGGN--ELIIPRG---DTTLEAGDRLIVIGAP 210 (225)
T ss_pred ecCCC--ceecCCC---CCEecCCCEEEEEEcH
Confidence 99764 3577887 8999999999999874
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.59 E-value=3.5e-14 Score=171.51 Aligned_cols=133 Identities=15% Similarity=0.104 Sum_probs=112.3
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
.++|+||||+|+.+..+++.|.. .+..++++|.|+++++...+ .+..++.||+++++.|+++|+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~------~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLS------SGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHh------CCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 46999999999988888888864 25789999999999887632 35678999999999999999999
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHh
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~ 537 (916)
|+.+|++++| |+.|+.++..+|+++| +.+|+||++|+++.+.++.+|+|.+ +......+..+++.+.
T Consensus 465 A~~vvv~~~d------~~~n~~i~~~ar~~~p--~~~iiaRa~d~~~~~~L~~~Gad~v--~~e~~e~sl~l~~~~L 531 (621)
T PRK03562 465 AEVLINAIDD------PQTSLQLVELVKEHFP--HLQIIARARDVDHYIRLRQAGVEKP--ERETFEGALKSGRLVL 531 (621)
T ss_pred CCEEEEEeCC------HHHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHCCCCEE--ehhhHhHHHHHHHHHH
Confidence 9999999987 9999999999999999 6689999999999999999999984 4333444555555443
No 13
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.46 E-value=3e-13 Score=154.16 Aligned_cols=142 Identities=14% Similarity=0.155 Sum_probs=113.7
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
++|++|||||+.|..++++|.+. |.++++++++.. +...+ ++ +.++.||++|+++|+++|+++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~---g~~vvVId~d~~----~~~~~--------~g--~~vI~GD~td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR---GQAVTVIVPLGL----EHRLP--------DD--ADLIPGDSSDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC---CCCEEEEECchh----hhhcc--------CC--CcEEEeCCCCHHHHHhcCccc
Confidence 68999999999999999999764 678999986421 11111 22 346899999999999999999
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEecccc
Q 002491 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRT 801 (916)
Q Consensus 722 adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~~~ 801 (916)
|+++|++++ +|++|+.+++++|+++++ ++|+++..++++
T Consensus 303 A~aVI~~t~---------dD~~Nl~ivL~ar~l~p~--------------------------------~kIIa~v~~~~~ 341 (393)
T PRK10537 303 ARAILALRD---------NDADNAFVVLAAKEMSSD--------------------------------VKTVAAVNDSKN 341 (393)
T ss_pred CCEEEEcCC---------ChHHHHHHHHHHHHhCCC--------------------------------CcEEEEECCHHH
Confidence 999999874 588999999999999976 379999999999
Q ss_pred hhhhhccCCCcEEecHHHHHHHHHHHHhhhhHH-HHHHHHh
Q 002491 802 RNLVSVSRISDYVLSNELVSMALAMVAEDKQIN-RVLEELF 841 (916)
Q Consensus 802 ~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~-~vl~eLl 841 (916)
.+.++++|++.+|.+.++.++.|++.+..+.++ +.+.+++
T Consensus 342 ~~~L~~~GaD~VIsp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 342 LEKIKRVHPDMIFSPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred HHHHHhcCCCEEECHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999887766667778899999887765443 3344433
No 14
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.44 E-value=2e-12 Score=127.41 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=126.6
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEecccc
Q 002491 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRT 801 (916)
Q Consensus 722 adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~~~ 801 (916)
|++||+|+.. +++-++|++++..+|.++.+.... ..|+|+|+.+..|
T Consensus 1 ARaIIiL~~k---~d~ye~Da~a~lsVLaL~~v~e~~------------------------------~g~vIVE~S~~~t 47 (206)
T PF06241_consen 1 ARAIIILAEK---EDRYESDADAFLSVLALQPVKEGL------------------------------SGHVIVEVSDSDT 47 (206)
T ss_pred CceEEEeCCC---CCcchhhHHHHHHHhhcccccccC------------------------------cccEEEEecCCCh
Confidence 6789999874 356789999999999987664321 3589999999999
Q ss_pred hhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhcccCceEEEEcCcccccCCCCccHHHHHHHhccCCcEEEE
Q 002491 802 RNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIG 881 (916)
Q Consensus 802 ~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~~eG~el~i~~~~~~~~~~~~ltf~dl~~~~r~~g~ilIG 881 (916)
.++++..++..+=.-..+++++|.|++.+|++..++++||+.+-+++|++.++.. .++.|.|+.. .-..+++.|
T Consensus 48 ~~LlKsv~G~~VetV~dv~skL~VQCsRQ~GL~~Iy~~iL~~~k~vf~l~~~P~L----~Gm~y~dvr~--~Fpdav~CG 121 (206)
T PF06241_consen 48 EQLLKSVSGLKVETVHDVISKLMVQCSRQPGLAQIYEDILGFEKNVFNLKRWPQL----DGMKYRDVRR--SFPDAVVCG 121 (206)
T ss_pred HHHHHhhcCceeeeHHHHHHHHHHHhccCccHHHHHHHHhCCCCcEEEEecCccc----CCcCHHHHHh--cCCcceeee
Confidence 9999998875544447888999999999999999999999999999999877543 6899999865 356899999
Q ss_pred EEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 882 YRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 882 i~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
+.+. | ++++||.+ +..+..||+|+||+..
T Consensus 122 v~r~-G-kI~fhP~D---d~vL~e~DklLvIa~~ 150 (206)
T PF06241_consen 122 VKRD-G-KIVFHPDD---DYVLREGDKLLVIAPV 150 (206)
T ss_pred eeeC-C-eeEECCCC---CceeecCCEEEEEeec
Confidence 9864 5 58999997 8999999999999975
No 15
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.36 E-value=5e-12 Score=119.79 Aligned_cols=114 Identities=23% Similarity=0.345 Sum_probs=95.1
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccE
Q 002491 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (916)
Q Consensus 645 ilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ada 724 (916)
++|||||+.|..+++.|.+. +.++++++.+ +++++.+.+.| +.++.||++++++|+++++++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~d--~~~~~~~~~~~----------~~~i~gd~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDRD--PERVEELREEG----------VEVIYGDATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEESS--HHHHHHHHHTT----------SEEEES-TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEECC--cHHHHHHHhcc----------cccccccchhhhHHhhcCccccCE
Confidence 68999999999999999873 5789999975 46777776633 346899999999999999999999
Q ss_pred EEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEecccchhh
Q 002491 725 ILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNL 804 (916)
Q Consensus 725 vIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~~~~~l 804 (916)
+|++++ +|..|+.+++.+|++++.. +|++++.++++.+.
T Consensus 66 vv~~~~---------~d~~n~~~~~~~r~~~~~~--------------------------------~ii~~~~~~~~~~~ 104 (116)
T PF02254_consen 66 VVILTD---------DDEENLLIALLARELNPDI--------------------------------RIIARVNDPENAEL 104 (116)
T ss_dssp EEEESS---------SHHHHHHHHHHHHHHTTTS--------------------------------EEEEEESSHHHHHH
T ss_pred EEEccC---------CHHHHHHHHHHHHHHCCCC--------------------------------eEEEEECCHHHHHH
Confidence 999985 5789999999999998763 79999999999999
Q ss_pred hhccCCCcEE
Q 002491 805 VSVSRISDYV 814 (916)
Q Consensus 805 l~~ag~~d~V 814 (916)
++..|++.+|
T Consensus 105 l~~~g~d~vi 114 (116)
T PF02254_consen 105 LRQAGADHVI 114 (116)
T ss_dssp HHHTT-SEEE
T ss_pred HHHCCcCEEE
Confidence 9988755444
No 16
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.24 E-value=4.3e-11 Score=143.72 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=117.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
..++|++|||+|+.|..+++.|.+. |.++++||.+ +++++.+.+.| +..+.||++++++|+++++
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d--~~~~~~~~~~g----------~~~i~GD~~~~~~L~~a~i 479 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETS--RTRVDELRERG----------IRAVLGNAANEEIMQLAHL 479 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHC---CCCEEEEECC--HHHHHHHHHCC----------CeEEEcCCCCHHHHHhcCc
Confidence 4579999999999999999999864 7889999974 57787776532 4568999999999999999
Q ss_pred CCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEecc
Q 002491 720 ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDS 799 (916)
Q Consensus 720 ~~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~ 799 (916)
++||.++++++ +|.+|..+++.+|..+++ .+|+++..++
T Consensus 480 ~~a~~viv~~~---------~~~~~~~iv~~~~~~~~~--------------------------------~~iiar~~~~ 518 (558)
T PRK10669 480 DCARWLLLTIP---------NGYEAGEIVASAREKRPD--------------------------------IEIIARAHYD 518 (558)
T ss_pred cccCEEEEEcC---------ChHHHHHHHHHHHHHCCC--------------------------------CeEEEEECCH
Confidence 99999998875 356777788888888755 3799999999
Q ss_pred cchhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHH
Q 002491 800 RTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRV 836 (916)
Q Consensus 800 ~~~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~v 836 (916)
++.+.++++|++.+|.+.+.+++.+++....|+..++
T Consensus 519 ~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~~~~~~ 555 (558)
T PRK10669 519 DEVAYITERGANQVVMGEREIARTMLELLETPPAGEV 555 (558)
T ss_pred HHHHHHHHcCCCEEEChHHHHHHHHHHHhcCCCcccc
Confidence 9999999888777777788889999998888876554
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.13 E-value=4.2e-10 Score=135.98 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=104.7
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
..+|++|||+|+.|..+++.|.+. |.+++++|.+ +++++.+.+.| ..++.||++++++|+++|++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d--~~~v~~~~~~g----------~~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMAN---KMRITVLERD--ISAVNLMRKYG----------YKVYYGDATQLELLRAAGAE 463 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhC---CCCEEEEECC--HHHHHHHHhCC----------CeEEEeeCCCHHHHHhcCCc
Confidence 368999999999999999999864 7889999975 46888776532 34689999999999999999
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEeccc
Q 002491 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSR 800 (916)
Q Consensus 721 ~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~~ 800 (916)
+||.+|++++ +|..|+.++..+|+.+|+. +|+++..|++
T Consensus 464 ~A~~vv~~~~---------d~~~n~~i~~~~r~~~p~~--------------------------------~IiaRa~~~~ 502 (601)
T PRK03659 464 KAEAIVITCN---------EPEDTMKIVELCQQHFPHL--------------------------------HILARARGRV 502 (601)
T ss_pred cCCEEEEEeC---------CHHHHHHHHHHHHHHCCCC--------------------------------eEEEEeCCHH
Confidence 9999999885 4678999999999998773 7999999999
Q ss_pred chhhhhccCCCcEEecHHHH-HHHHH
Q 002491 801 TRNLVSVSRISDYVLSNELV-SMALA 825 (916)
Q Consensus 801 ~~~ll~~ag~~d~V~S~~lv-s~~lA 825 (916)
+.+.++++|+++++ ...+. +..++
T Consensus 503 ~~~~L~~~Ga~~vv-~e~~es~l~l~ 527 (601)
T PRK03659 503 EAHELLQAGVTQFS-RETFSSALELG 527 (601)
T ss_pred HHHHHHhCCCCEEE-ccHHHHHHHHH
Confidence 99999998865544 33333 44444
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.06 E-value=1.1e-09 Score=132.58 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=102.9
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
.+|++|||+|+.|+.+++.|.+. |.+++++|.+ ++|++.+.+.| ..++.||+++++.|+++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d--~~~v~~~~~~g----------~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMTVLDHD--PDHIETLRKFG----------MKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---CCCEEEEECC--HHHHHHHHhcC----------CeEEEEeCCCHHHHHhcCCCc
Confidence 58999999999999999999864 7889999975 47888876532 346899999999999999999
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEecccc
Q 002491 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRT 801 (916)
Q Consensus 722 adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d~~~ 801 (916)
||.+|++++ +|..|+.++.++|++.|+. +|+++..|.++
T Consensus 465 A~~vvv~~~---------d~~~n~~i~~~ar~~~p~~--------------------------------~iiaRa~d~~~ 503 (621)
T PRK03562 465 AEVLINAID---------DPQTSLQLVELVKEHFPHL--------------------------------QIIARARDVDH 503 (621)
T ss_pred CCEEEEEeC---------CHHHHHHHHHHHHHhCCCC--------------------------------eEEEEECCHHH
Confidence 999999885 4678999999999998763 68999999999
Q ss_pred hhhhhccCCCcEEecHHHH-HHHHH
Q 002491 802 RNLVSVSRISDYVLSNELV-SMALA 825 (916)
Q Consensus 802 ~~ll~~ag~~d~V~S~~lv-s~~lA 825 (916)
.+.++.+|++ .|.....- +..++
T Consensus 504 ~~~L~~~Gad-~v~~e~~e~sl~l~ 527 (621)
T PRK03562 504 YIRLRQAGVE-KPERETFEGALKSG 527 (621)
T ss_pred HHHHHHCCCC-EEehhhHhHHHHHH
Confidence 8888887755 44333222 44444
No 19
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.97 E-value=6.2e-10 Score=98.68 Aligned_cols=72 Identities=21% Similarity=0.450 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhh---hcCCCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHHHHHHHH
Q 002491 295 TIFLIIFGGLALYA---VSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (916)
Q Consensus 295 ~l~li~~g~l~~~~---ie~~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~ 366 (916)
++.++..|+++++. .|++++.||+||+++|+||+||||. |.+..||++++++++.|+.+++++++.+++.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666 4678999999999999999999997 578889999999999999999999999888765
No 20
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=6.8e-08 Score=98.86 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=119.2
Q ss_pred cccccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC
Q 002491 378 EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (916)
Q Consensus 378 ~~~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg 457 (916)
.....+|++|||+|+.+..+...|... +..+++++.+++.++... ..++.++.||+++.+.|.+++
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~------~~~~~vi~~~~~~~~~~~--------~~~~~~~~gd~~~~~~l~~a~ 82 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLAS------GIPVVVIDSDEDRVELLR--------ELGLLVVLGDATREEVLEAAG 82 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHC------CCCEEEEECCHHHHHHHH--------HCCCcEEEecCCCHHHHHhcC
Confidence 346789999999999888888888653 348899999987766543 235678999999999999999
Q ss_pred cccccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecC-CCCHHHHHHcCCCeEEEechHHHHHHHHHHHH
Q 002491 458 VSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD-LDNEPLVKLVGGELIETVVAHDVIGRLMIQCA 536 (916)
Q Consensus 458 i~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d-~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~ 536 (916)
+++|+.++++..+ +..|+.++..++.++| ..+++++..+ ..+.+.+...|++.+ +++....+..++..+
T Consensus 83 ~~~a~~vi~~~~~------~~~~~~~~~~~~~~~p--~~~i~~~~~~~~~~~~~l~~~G~~~v--i~~~~~~~~~~~~~~ 152 (212)
T COG1226 83 IERARAVIVTLSD------DATNVFIVLLARAINP--ELEILARARDLDEAVETLTTVGADEV--VPPTFESALLLARAA 152 (212)
T ss_pred hhheeEEEEecCC------HHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHHHcCCCee--ecHHHHHHHHHHHHH
Confidence 9999999999977 8899999999999999 5569999999 666788999999974 888888888888888
Q ss_pred hcCcHHHHH
Q 002491 537 LQPGLAQIW 545 (916)
Q Consensus 537 ~~Pg~~~vl 545 (916)
..+......
T Consensus 153 ~~~~~~~~~ 161 (212)
T COG1226 153 LVGLGGDSV 161 (212)
T ss_pred hcccCCchh
Confidence 766555443
No 21
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.60 E-value=3.2e-08 Score=112.27 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC-------CCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHH
Q 002491 289 LALLFATIFLIIFGGLALYAVSD-------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGL 360 (916)
Q Consensus 289 l~ll~~~l~li~~g~l~~~~ie~-------~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~ 360 (916)
+.++++++++++++++.|+. |. .|+.-++||+++|||||||||. |.|+.|++++..-++.|++++|+-|.+
T Consensus 347 lLllfL~~GI~iFStlvY~~-Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPIti 425 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFA-EKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITI 425 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHh
Confidence 44556678888888888864 42 5789999999999999999997 689999999999999999999999999
Q ss_pred HHHHHHHH
Q 002491 361 VSDAISEK 368 (916)
Q Consensus 361 it~~i~~~ 368 (916)
|.+-+...
T Consensus 426 Iv~nF~~~ 433 (477)
T KOG3713|consen 426 IVNNFSMY 433 (477)
T ss_pred HhhhHHHH
Confidence 88777664
No 22
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.53 E-value=2e-08 Score=108.67 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHHH
Q 002491 289 LALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (916)
Q Consensus 289 l~ll~~~l~li~~g~l~~~~ie~------~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~i 361 (916)
|.++++.+++|++++..|+.-.+ .|+.|||||+++|+|||||||. |.|.+|+++.-+..+.|++.++.-+.+|
T Consensus 363 LLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 363 LLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred HHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 33445566777777766654211 4789999999999999999997 5889999999888999999888887776
Q ss_pred HHHHH
Q 002491 362 SDAIS 366 (916)
Q Consensus 362 t~~i~ 366 (916)
.+-+.
T Consensus 443 VsNFn 447 (507)
T KOG1545|consen 443 VSNFN 447 (507)
T ss_pred Eeccc
Confidence 65443
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.8e-07 Score=106.52 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhhhhcC-----------CCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHH
Q 002491 293 FATIFLIIFGGLALYAVSD-----------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGL 360 (916)
Q Consensus 293 ~~~l~li~~g~l~~~~ie~-----------~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~ 360 (916)
.+.++.+++.+.+.|..|. .++.||+||.++|+||+||||. |.||.||+++..+.++|+.+|+.--|+
T Consensus 238 YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGI 317 (654)
T KOG1419|consen 238 YIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGI 317 (654)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccc
Confidence 3334444445555555552 3799999999999999999998 589999999999999999999999888
Q ss_pred HHHHHHHHHHh
Q 002491 361 VSDAISEKVDS 371 (916)
Q Consensus 361 it~~i~~~l~~ 371 (916)
+...+.-++++
T Consensus 318 LGSGfALKVQe 328 (654)
T KOG1419|consen 318 LGSGFALKVQE 328 (654)
T ss_pred ccchhhhhhHH
Confidence 88777666543
No 24
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.26 E-value=1.3e-06 Score=109.82 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc------CCCHHH-----------------HHHHHHhhhhccCCCCCc-CCccCcee
Q 002491 287 KLLALLFATIFLIIFGGLALYAVS------DSSFAE-----------------ALWLSWTFVADSGNHADR-VGTGPRIV 342 (916)
Q Consensus 287 ~ll~ll~~~l~li~~g~l~~~~ie------~~s~~d-----------------A~y~~~~titTvGygd~~-~t~~gRi~ 342 (916)
+++.++++++.++-+.+++||++. +.+|.+ |+||+++|+||+||||.. .+..+|+|
T Consensus 201 ~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~ 280 (823)
T PLN03192 201 RCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHH
Confidence 344455555555555566665542 234443 799999999999999985 78899999
Q ss_pred eeeehhhhHHHHHHHHHHHHHHHHH
Q 002491 343 SVSISSGGMLIFAMMLGLVSDAISE 367 (916)
Q Consensus 343 ~v~lil~Gi~ifa~~ig~it~~i~~ 367 (916)
+++++++|+++|++++|.+++.+.+
T Consensus 281 ~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 281 IIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 25
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.23 E-value=2.6e-06 Score=84.20 Aligned_cols=97 Identities=20% Similarity=0.122 Sum_probs=70.8
Q ss_pred echHHHHHHHHHHHHhcCcHHHHHHHHhcc-C---CceEEEecCCCcCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeC
Q 002491 522 VVAHDVIGRLMIQCALQPGLAQIWEDILGF-E---NAEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILN 596 (916)
Q Consensus 522 V~p~~l~a~lLa~~~~~Pg~~~vl~~Ll~~-~---g~ei~v~~~p~l~G~tf~el~~~-~~~~ivIGI~r~~~~g~~~ln 596 (916)
++..+-.++.+++.+--+....-++.+... . -.++++...+++.|++++|+..+ ..+++||||.| +++.+++
T Consensus 52 v~l~~eEa~~va~iL~~~~~~~~f~~~~~~~p~l~~~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r---~~e~I~S 128 (162)
T COG0490 52 VSLTDEEARQVAAILGMSYKTERFEQTEPALPGLIIEWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVR---NEEKILS 128 (162)
T ss_pred eeccHHHHHHHHHHhCchhhhHHHHhhhhccccchheeeeeecCCcccCcchhhcccccccCcEEEEEEe---cCcEecC
Confidence 444555566666655433333322222211 1 14677788889999999999987 47999999998 5889999
Q ss_pred CCCCceecCCCEEEEEEeCCCCCCC
Q 002491 597 PDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 597 P~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
|++.++|++||.|+|+|+....+++
T Consensus 129 PgPy~vle~gDtlvviG~~~~~~r~ 153 (162)
T COG0490 129 PGPYTVLEAGDTLVVIGEETGLKRA 153 (162)
T ss_pred CCchhhhcCCCEEEEEecchHhHHH
Confidence 9999999999999999998876654
No 26
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.1e-06 Score=94.91 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHhhhhccCCCCCc--C------Cc-cCceeeeeehhhhHHH
Q 002491 283 YPYAKLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR--V------GT-GPRIVSVSISSGGMLI 353 (916)
Q Consensus 283 ~~~~~ll~ll~~~l~li~~g~l~~~~ie~~s~~dA~y~~~~titTvGygd~~--~------t~-~gRi~~v~lil~Gi~i 353 (916)
...-.++.++.+.++++..|+..|..+|+||++||+|+.++|+||+||||.. + +. .=++++++.|++|+.+
T Consensus 156 S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~v 235 (350)
T KOG4404|consen 156 SVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCV 235 (350)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHH
Confidence 3334456666667888888999999999999999999999999999999952 2 12 2356788999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002491 354 FAMMLGLVSDAISE 367 (916)
Q Consensus 354 fa~~ig~it~~i~~ 367 (916)
++.++.+++-.+..
T Consensus 236 i~a~~NllvLrf~t 249 (350)
T KOG4404|consen 236 IYALLNLLVLRFMT 249 (350)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888876654443
No 27
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.13 E-value=3.4e-06 Score=95.77 Aligned_cols=234 Identities=17% Similarity=0.143 Sum_probs=148.1
Q ss_pred CCCCeEEEEcccc---cHHHHHHHHHHhc-CCCCeEEEEcc-CChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHH
Q 002491 640 KYPEKILFCGWRR---DIDDMIMVLEAFL-APGSELWMLNE-VPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHL 714 (916)
Q Consensus 640 ~~~~hilI~Gwg~---~~~~li~~L~~~~-~~g~~v~II~~-~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L 714 (916)
..++||++||.=. ....+-+-|.+.. .-..+|+.+-. .|+-|.+..... ...+|.|.+|...++-+|
T Consensus 355 hgkkhivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfkr--------hft~veffqgtvmnp~dl 426 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKR--------HFTQVEFFQGTVMNPHDL 426 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhh--------heeeEEEecccccChhhh
Confidence 3578999999532 1222222333221 11245666544 344443333221 235789999999999999
Q ss_pred hcCCCCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEE
Q 002491 715 ESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIIS 794 (916)
Q Consensus 715 ~~a~I~~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~Iis 794 (916)
.++.|+.||++++|+..- -.++...|+.|++-+..+|...++. .+|..+-|- |=-+
T Consensus 427 ~rvki~~adaclvlanky-c~dpdaedaanimrvisiknys~di-------------------rvi~qlmqy----hnka 482 (1103)
T KOG1420|consen 427 ARVKIESADACLVLANKY-CADPDAEDAANIMRVISIKNYSPDI-------------------RVITQLMQY----HNKA 482 (1103)
T ss_pred hheeccccceeeeecccc-cCCCChhhhhhheEEEEeccCCCch-------------------hHHHHHHHh----hchh
Confidence 999999999999998732 2355677889999888888877653 144444331 1122
Q ss_pred EEecccchhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhc-------------------ccCceEEEEcCcc
Q 002491 795 EILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFA-------------------EEGNEMCIKPAEF 855 (916)
Q Consensus 795 Ei~d~~~~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~-------------------~eG~el~i~~~~~ 855 (916)
.+++.-.- .-..++|+|.-.++--..+||.-.-|+.+..+..||. .-|.|+|-+..+
T Consensus 483 yllnipsw---dwk~gddviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~gmemyte~ls- 558 (1103)
T KOG1420|consen 483 YLLNIPSW---DWKEGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGVGMEMYTEYLS- 558 (1103)
T ss_pred eeecCCCc---ccccCCceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhcchhHhhhhcC-
Confidence 23321110 1113588888888887788999889999998888865 124455543222
Q ss_pred cccCCCCccHHHHHHHhccC-CcEEEEEEeCC----CCcEEECCCCCCCCCeecCCCEEEEEec
Q 002491 856 YLFDQEEISFFDIMIRGRQR-QEIVIGYRLAN----TERAIINPSQKSEPRKWSLDDVFVVISS 914 (916)
Q Consensus 856 ~~~~~~~ltf~dl~~~~r~~-g~ilIGi~~~~----g~~~iiNP~~k~~~~~l~~gD~lIVi~~ 914 (916)
+...+++|.++.+....+ +-.++++...+ +.++.|||.+ ..++++|-.=+.|+.
T Consensus 559 --p~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~---h~kiq~~tqgffiaq 617 (1103)
T KOG1420|consen 559 --PAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGN---HLKIQEGTQGFFIAQ 617 (1103)
T ss_pred --HhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCC---CceeccCCceEEEec
Confidence 224688999887765433 66777755432 2247899987 789999988777765
No 28
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=3.2e-05 Score=78.97 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=108.1
Q ss_pred CCCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 639 PKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 639 ~~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
....+|+++||||+.+..++..|... +..+++++..+ ++.+.+...| +.++.||+++.+.|++++
T Consensus 18 ~~l~~~~ii~g~~~~g~~~~~~l~~~---~~~~~vi~~~~--~~~~~~~~~~----------~~~~~gd~~~~~~l~~a~ 82 (212)
T COG1226 18 VRLKRHVIIVGFGRVGQIVARALLAS---GIPVVVIDSDE--DRVELLRELG----------LLVVLGDATREEVLEAAG 82 (212)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHHC---CCCEEEEECCH--HHHHHHHHCC----------CcEEEecCCCHHHHHhcC
Confidence 35689999999999999999999864 56788888643 5666655432 246899999999999999
Q ss_pred CCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEec
Q 002491 719 LETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILD 798 (916)
Q Consensus 719 I~~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d 798 (916)
++.|+.+++... .+..++..+..++.++|.. .+++...+
T Consensus 83 ~~~a~~vi~~~~---------~~~~~~~~~~~~~~~~p~~--------------------------------~i~~~~~~ 121 (212)
T COG1226 83 IERARAVIVTLS---------DDATNVFIVLLARAINPEL--------------------------------EILARARD 121 (212)
T ss_pred hhheeEEEEecC---------CHHHHHHHHHHHHHHCCCC--------------------------------EEEEEecc
Confidence 999999999874 4667888888899998773 46777777
Q ss_pred -ccchhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHH
Q 002491 799 -SRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVL 837 (916)
Q Consensus 799 -~~~~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl 837 (916)
..+...+...|..+++......+..++..+..+......
T Consensus 122 ~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 122 LDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred chHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 445566777787777777666666666555554444333
No 29
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00028 Score=77.23 Aligned_cols=211 Identities=13% Similarity=0.034 Sum_probs=139.0
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc-cCcccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK-VSVSKA 461 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r-Agi~~A 461 (916)
+.|+|+|-|..+..+++.+....+ .+...+++.++.+.++.. .....+.+.+=|||+.+.|+. .+-+-.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~---~~~f~~vv~~~qe~~~~~-------~~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS---NHNFYIVVVKNQESLIPK-------NYPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc---CceEEEEEeechhhcccc-------cCcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 579999999999999887765432 345666666665443321 123457788889999998875 577778
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcCCCeEEEechHHHHHHHHHHHHhcCcH
Q 002491 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (916)
Q Consensus 462 ~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~~Pg~ 541 (916)
+++|+.-+ -.++..+.-.+|..+++..+.|+......++-+..+...++. +...+..++.....+ |++
T Consensus 72 ~Afi~~qd-------~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~l---id~~~vL~~~F~~~L--p~I 139 (471)
T COG3400 72 DAFIIIQD-------FKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLIL---IDEFEVLANKFISRL--PNI 139 (471)
T ss_pred hhheehhh-------HHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceee---cchHHHHHHHHHHhc--CCc
Confidence 88888874 345667778889888865555555544344444455555553 445555555544333 333
Q ss_pred HHHHHHHhcc--CCceEEEecCCCcCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCC
Q 002491 542 AQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (916)
Q Consensus 542 ~~vl~~Ll~~--~g~ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~ 619 (916)
...-..+--+ +-.|+.+...+.++=+.+++++.+ .+.++++.| +|+. +-|..+.+|++||+++|+|++..+.
T Consensus 140 ~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~qk--~~RIvl~YR---N~kl-ll~~~slvlqp~D~lLVvG~P~~ln 213 (471)
T COG3400 140 PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQK--EYRIVLLYR---NDKL-LLSTKSLVLQPRDILLVVGNPEILN 213 (471)
T ss_pred cccchhcccccceEEEEecCCCchhhhhhhhhhhhh--eeEEEEEEE---CCEE-EEeccceEecCCCEEEEeCChHHHH
Confidence 3221111111 225666666777888888888753 688999998 4654 6688999999999999999987654
Q ss_pred CC
Q 002491 620 AP 621 (916)
Q Consensus 620 ~~ 621 (916)
.+
T Consensus 214 ~~ 215 (471)
T COG3400 214 AV 215 (471)
T ss_pred HH
Confidence 43
No 30
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=97.83 E-value=1.7e-05 Score=68.45 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=46.4
Q ss_pred eEEEecCCCcCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 002491 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (916)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~ 620 (916)
|+.+.+.++++|++++|+.... +++.++||.| ++..+.|.++++|++||.|+++|+.+++.+
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R----~~~~~~p~~~~~l~~gD~l~v~g~~~~i~~ 65 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKR----GGEIIIPDGDTVLQAGDILIVVGDPEDIER 65 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEE----TEEEES--TT-BE-TTEEEEEEEEHHHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEE----CCEEECCCCCCEECCCCEEEEEECHHHHHH
Confidence 5666677889999999976543 4899999987 367789999999999999999999876543
No 31
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00027 Score=80.35 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=146.4
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhc----CCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFL----APGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~----~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~ 716 (916)
..+|+++|--.-....+.+-|.++- .....++++.....+...+-+.+. .+=|.++++++|....+++|++
T Consensus 286 ~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~eld~~~rmllki-----plwnnrvhyv~gs~lrd~dl~r 360 (1087)
T KOG3193|consen 286 VESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAELDNQTRMLLKI-----PLWNNRVHYVRGSSLRDEDLER 360 (1087)
T ss_pred ccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHHhcchhhhheec-----cccccceeeecccccccchhhh
Confidence 4578999877666666666666542 123567777642222222223332 2335578999999999999999
Q ss_pred CCCCCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEE
Q 002491 717 LPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEI 796 (916)
Q Consensus 717 a~I~~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi 796 (916)
|++.++.++.||+..... +...+|..+++-.-.+|+..|+...| +|. -|
T Consensus 361 a~~~~s~acfilsar~~~-~k~a~dehtilrswaikdfapnv~qy-----vqi--------------fr----------- 409 (1087)
T KOG3193|consen 361 ANVATSKACFILSARHVN-RKVATDEHTILRSWAIKDFAPNVKQY-----VQI--------------FR----------- 409 (1087)
T ss_pred hhhcccchheeeehhhhc-cccccchhhHHHHHhhhhcCCchHHH-----hhh--------------hc-----------
Confidence 999999999999875432 34578999999999999999875221 111 11
Q ss_pred ecccchhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhc--------------------ccCceEEEEc--Cc
Q 002491 797 LDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFA--------------------EEGNEMCIKP--AE 854 (916)
Q Consensus 797 ~d~~~~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~--------------------~eG~el~i~~--~~ 854 (916)
+++.-.++. +.-.|.-+++-=.+||+--..|+++.++.-|+. ..|+|+|-.- -+
T Consensus 410 --~e~k~hi~~--ae~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~ds 485 (1087)
T KOG3193|consen 410 --AETKMHIEH--AEVLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDS 485 (1087)
T ss_pred --hhhhhhhhh--heeEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEeccc
Confidence 222211121 122344555555666766777777777664442 2366776542 22
Q ss_pred ccccCCCCccHHHHHHHh-ccCCcEEEEEEeCC-CCcEEECCCCCCCCCeecCCCEEEEEe
Q 002491 855 FYLFDQEEISFFDIMIRG-RQRQEIVIGYRLAN-TERAIINPSQKSEPRKWSLDDVFVVIS 913 (916)
Q Consensus 855 ~~~~~~~~ltf~dl~~~~-r~~g~ilIGi~~~~-g~~~iiNP~~k~~~~~l~~gD~lIVi~ 913 (916)
.+..+-++.+|......+ ++-|.-+||++..+ .+++.+||.. ...+++.|.++.++
T Consensus 486 kff~ey~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~---~hi~~~~dt~yym~ 543 (1087)
T KOG3193|consen 486 KFFCEYVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGS---SHIIQPTDTVYYMG 543 (1087)
T ss_pred ceeeeecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCc---ccccCCCCeEEEEe
Confidence 333344566666654444 45599999998643 3357899986 78999999999886
No 32
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.61 E-value=5.1e-06 Score=90.89 Aligned_cols=93 Identities=22% Similarity=0.358 Sum_probs=70.7
Q ss_pred HHHhhhheeecccchHHHHHHHHHHHHHHHHHHhhhhhhcC------CCHHHHHHHHHhhhhccCCCCCc-CCccCceee
Q 002491 271 RVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHADR-VGTGPRIVS 343 (916)
Q Consensus 271 rl~y~ld~~~s~~~~~~ll~ll~~~l~li~~g~l~~~~ie~------~s~~dA~y~~~~titTvGygd~~-~t~~gRi~~ 343 (916)
.+.|-+...-+... +.++.+++++|+++++.||.--+ .++..|||++++|+||.||||.. .+.+|++|.
T Consensus 312 ILGYTLKSCASELG----FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfG 387 (632)
T KOG4390|consen 312 ILGYTLKSCASELG----FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFG 387 (632)
T ss_pred hhhhhHHHHHHHHh----HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhh
Confidence 45666644443333 34556678888888888875322 57899999999999999999975 678999999
Q ss_pred eeehhhhHHHHHHHHHHHHHHHHH
Q 002491 344 VSISSGGMLIFAMMLGLVSDAISE 367 (916)
Q Consensus 344 v~lil~Gi~ifa~~ig~it~~i~~ 367 (916)
-+..+.|+++++.-+.+|.+-+..
T Consensus 388 siCSLSGVLVIALPVPvIVSNFSR 411 (632)
T KOG4390|consen 388 SICSLSGVLVIALPVPVIVSNFSR 411 (632)
T ss_pred hhhcccceEEEeccccEEEechhH
Confidence 999999999988888877655544
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.54 E-value=0.0001 Score=82.93 Aligned_cols=105 Identities=21% Similarity=0.213 Sum_probs=65.1
Q ss_pred cchHHHHHHHHH-HHHHHHHHHhhhhhh-------cC--------------CCHHHHHHHHHhhhhccCCCCCc---CCc
Q 002491 283 YPYAKLLALLFA-TIFLIIFGGLALYAV-------SD--------------SSFAEALWLSWTFVADSGNHADR---VGT 337 (916)
Q Consensus 283 ~~~~~ll~ll~~-~l~li~~g~l~~~~i-------e~--------------~s~~dA~y~~~~titTvGygd~~---~t~ 337 (916)
-+|+.++.++++ .++..++.+++||++ +. .+|.+||||++.|.||+|||... ...
T Consensus 32 ~~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~ 111 (336)
T PF01007_consen 32 MSWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECP 111 (336)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHH
T ss_pred CCeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcc
Confidence 557665655544 445555555555543 11 48999999999999999999842 345
Q ss_pred cCceeeeeehhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccceEEEEecc
Q 002491 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILILGWS 391 (916)
Q Consensus 338 ~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~l~~lr~G~~~~~~~~HIII~G~g 391 (916)
.+-++.++-.++|+++.++++|++..-+.. =+++...+...++.||+-.+
T Consensus 112 ~a~~l~~~q~~~g~l~~a~~~Glvfar~sr----P~~R~~tI~FS~~AVI~~~d 161 (336)
T PF01007_consen 112 YAIFLVTIQSLVGLLLDAFMTGLVFARFSR----PKKRASTILFSKKAVIAPRD 161 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCGGGSEEE-SSEEEEEET
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccceEEEEeeeEEeecC
Confidence 566666677789999999998887654332 11111235567788887553
No 34
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.11 E-value=0.00028 Score=85.78 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhhccCCCCCc-CCccCceeeeeehhhhHHHHHHHHHHHHHHHHHH
Q 002491 314 FAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (916)
Q Consensus 314 ~~dA~y~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~ 368 (916)
+.-|+||++.|+||+|||+.+ .+....+|+++++++|+++||++||-++..++..
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 467999999999999999986 6678899999999999999999999998877653
No 35
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=97.04 E-value=0.0021 Score=59.95 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=54.1
Q ss_pred cCCCeEEEechHHHHHHHHHHHHhcCcHHHHHHHHhccC--------------------CceEEEecCC-CcCCCcHHhH
Q 002491 514 VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE--------------------NAEFYIKRWP-QLDDLRFEEV 572 (916)
Q Consensus 514 ~Gad~VevV~p~~l~a~lLa~~~~~Pg~~~vl~~Ll~~~--------------------g~ei~v~~~p-~l~G~tf~el 572 (916)
.++|. +|+.+++...+||+++..||+++++.+|+... ++|+|....| .+.|++|.++
T Consensus 8 ~~~d~--vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~ 85 (101)
T PF03493_consen 8 KFADQ--VICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEA 85 (101)
T ss_dssp TTT-E--EEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHH
T ss_pred ccCce--EEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHH
Confidence 35676 59999999999999999999999999998641 2578888875 6999999999
Q ss_pred hhh-C--CCeEEEEEE
Q 002491 573 VIS-F--PDAIPCGIK 585 (916)
Q Consensus 573 ~~~-~--~~~ivIGI~ 585 (916)
... + .+++++||+
T Consensus 86 ~~~~~~~~~viLigIe 101 (101)
T PF03493_consen 86 ARLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHHS--EEEEEE
T ss_pred HHHHHHHcCcEEEEeC
Confidence 874 2 589999984
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00042 Score=79.73 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHHHHHHHHHHHHhh
Q 002491 311 DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSL 372 (916)
Q Consensus 311 ~~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~l~~l 372 (916)
.|+|.+|+|++++++||+|||+. |.|..||+|+++..++|+-++.+.++-+...+.+.+..+
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999997 478899999999999999999888888887777765543
No 37
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.01 Score=67.59 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhhhhhcC--------CCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHHHH
Q 002491 292 LFATIFLIIFGGLALYAVSD--------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVS 362 (916)
Q Consensus 292 l~~~l~li~~g~l~~~~ie~--------~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~it 362 (916)
+++++.+.++.++.+.+-|. .++.++.|+...|+-++||||. |.|+.||.++++.-++|.++-++++++|+
T Consensus 258 ~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvis 337 (489)
T KOG3684|consen 258 LVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIA 337 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHH
Confidence 34555566666666655442 3599999999999999999998 57889999999988999888888888877
Q ss_pred HHH
Q 002491 363 DAI 365 (916)
Q Consensus 363 ~~i 365 (916)
.-+
T Consensus 338 RKL 340 (489)
T KOG3684|consen 338 RKL 340 (489)
T ss_pred HHH
Confidence 544
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0014 Score=71.46 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=69.7
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHhhccc-cccccccccccccCCCCChhHHHHhhhhee-----ecccchHHHHHHHHHH
Q 002491 223 DGRTVALYSVIVT-LLMPFVLYKYLDYL-PQIKNFSKRTKKNKEEVPLKKRVAYSVDVC-----FSVYPYAKLLALLFAT 295 (916)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~l~~rl~y~ld~~-----~s~~~~~~ll~ll~~~ 295 (916)
+.|.+++++..|+ +++|..+|-++.-= |.. -++++.-+.+++ ++..-++.+...
T Consensus 6 nvR~l~Livct~tYLLvGAaVFdaLEse~E~~---------------~r~~l~~~~~~~~~kyn~s~~d~r~~er~---- 66 (350)
T KOG4404|consen 6 NVRTLLLIVCTFTYLLVGAAVFDALESENEAR---------------ERERLERRLANLKRKYNLSEEDYRELERV---- 66 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH---------------HHHHHHHHHHHHHHhhCCCHHHHHHHHHH----
Confidence 4788999999999 99999988665433 221 112222222221 232333322211
Q ss_pred HHHHHHHHhhhhhhcCCCHHHHHHHHHhhhhccCCCCC-cCCccCceeeeeehhhhHHHHHHHHHHH
Q 002491 296 IFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (916)
Q Consensus 296 l~li~~g~l~~~~ie~~s~~dA~y~~~~titTvGygd~-~~t~~gRi~~v~lil~Gi~ifa~~ig~i 361 (916)
++-+.---.-..|.|.-||||+.+.+||+|||-. |.|.+||+|.++.-++|+-+--+++..+
T Consensus 67 ----i~~s~ph~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 67 ----ILKSEPHKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ----HHhcCccccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 0001000111248999999999999999999976 5788999999988888864433333333
No 39
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0018 Score=65.39 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=52.4
Q ss_pred EEEecCCCcCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 556 FYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 556 i~v~~~p~l~G~tf~el~~~-~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
..+.+.+.++|+|++|+... ..++.||+|+| +++.+++|+.+++|++||.|++-|++.....+
T Consensus 123 v~v~~~S~l~gktLg~l~L~t~tGvrVIAIRR---G~~wi~~Pd~~~~Ir~gDvLIarG~~~g~~~l 186 (204)
T COG3273 123 VRVEKGSELAGKTLGELDLATNTGVRVIAIRR---GERWIYGPDEDTKIREGDVLIARGTDAGVELL 186 (204)
T ss_pred EEecCCCeecccchhhhccccccceEEEEEec---CCccccCCCccceeccCCEEEEecchhhHHHH
Confidence 45566778999999999875 46899999998 45688999999999999999999987765443
No 40
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.00016 Score=83.05 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHhhhhccCCCCCc-CCccCc--------eeeeeehhhhHHHHHHHH
Q 002491 291 LLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR-VGTGPR--------IVSVSISSGGMLIFAMML 358 (916)
Q Consensus 291 ll~~~l~li~~g~l~~~~ie~~s~~dA~y~~~~titTvGygd~~-~t~~gR--------i~~v~lil~Gi~ifa~~i 358 (916)
++.++++.+..|+.++...|+++|++|||++++++||+||||.. .+..++ .+..+++++|+..++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 220 LLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred hheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 33445666677888888889999999999999999999999985 454555 345567777777776655
No 41
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0053 Score=71.01 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhhccCCCCCc-CCccCceeeeeehhhhHHHHHHHHHHHHHHHHHH
Q 002491 314 FAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (916)
Q Consensus 314 ~~dA~y~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~ 368 (916)
+..++||+++.+||+|||.+. .+...++|++.+|++|-++++.++|-++..|++.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 688999999999999999985 6778999999999999999999999988877664
No 42
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.10 E-value=0.018 Score=58.09 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=61.2
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
..++++|+|+|+.+...++.|.+. |..|+||+.. .++.+.+ +..+. + +.+.+++++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~---ga~V~VIsp~----~~~~l~~-------l~~i~--~------~~~~~~~~dl~ 69 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT---GAFVTVVSPE----ICKEMKE-------LPYIT--W------KQKTFSNDDIK 69 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCc----cCHHHHh-------ccCcE--E------EecccChhcCC
Confidence 357899999999999999999765 7889999743 3444432 12222 1 35778888999
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHh
Q 002491 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRDI 754 (916)
Q Consensus 721 ~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l 754 (916)
.||.|++.+++ |..|..+...+|..
T Consensus 70 ~a~lViaaT~d---------~e~N~~i~~~a~~~ 94 (157)
T PRK06719 70 DAHLIYAATNQ---------HAVNMMVKQAAHDF 94 (157)
T ss_pred CceEEEECCCC---------HHHHHHHHHHHHHC
Confidence 99999988753 56788888888764
No 43
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.013 Score=58.37 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=40.2
Q ss_pred CCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 861 EEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 861 ~~ltf~dl~~~~r~~g~ilIGi~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
.+.+.+|+..+ .+.|+++|||.+ ++ +.+++|.+ ..++++||.|||+|++
T Consensus 99 ~GksiGdl~ir-q~TGaTIIAI~r-~~-e~I~SPgP---y~vle~gDtlvviG~~ 147 (162)
T COG0490 99 IGKTIGDLNIR-QNTGATVIAIVR-NE-EKILSPGP---YTVLEAGDTLVVIGEE 147 (162)
T ss_pred cCcchhhcccc-cccCcEEEEEEe-cC-cEecCCCc---hhhhcCCCEEEEEecc
Confidence 46677888664 345999999999 55 48999987 8999999999999964
No 44
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.08 E-value=0.03 Score=56.50 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=59.9
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
...+++|+|+|+.+.+.++.|... +..|++++.+ ..++.. ++ + .+.+ ..+.++.+++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l~-~l-----~-~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEMK-EL-----P-YITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHHH-hc-----c-CcEE------EecccChhcCCC
Confidence 356899999999999999998763 4677777533 222221 11 1 2222 346677888999
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhh
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l 490 (916)
|+.||++|+| |+.|..++..++..
T Consensus 71 a~lViaaT~d------~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYAATNQ------HAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEECCCC------HHHHHHHHHHHHHC
Confidence 9999999987 89999999988875
No 45
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.93 E-value=0.022 Score=66.41 Aligned_cols=94 Identities=9% Similarity=0.168 Sum_probs=71.1
Q ss_pred hhheeecccchHHHHHHHHHHHHHHHHHHhhhhhh---------------cCCCHHHHHHHHHhhhhccCCCCCcCCccC
Q 002491 275 SVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV---------------SDSSFAEALWLSWTFVADSGNHADRVGTGP 339 (916)
Q Consensus 275 ~ld~~~s~~~~~~ll~ll~~~l~li~~g~l~~~~i---------------e~~s~~dA~y~~~~titTvGygd~~~t~~g 339 (916)
+||+.|+..-+..+...+.-++-++=+.+++||+. +|..+.-++||++-|++|+|..-.|.+...
T Consensus 350 ~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~~~E 429 (815)
T KOG0499|consen 350 HLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQTLFE 429 (815)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcchHHH
Confidence 56666665444444555555666677788888875 245789999999999999998877777666
Q ss_pred ceeeeeehhhhHHHHHHHHHHHHHHHHHH
Q 002491 340 RIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (916)
Q Consensus 340 Ri~~v~lil~Gi~ifa~~ig~it~~i~~~ 368 (916)
.+|..+--+.|+++|+.+||-+=+++...
T Consensus 430 ~Vf~~~~w~mGVFvFslliGQmRDvi~aA 458 (815)
T KOG0499|consen 430 IVFQLLNWFMGVFVFSLLIGQMRDVIGAA 458 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777899999999999887777653
No 46
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.37 E-value=0.049 Score=62.72 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhhccCCCCCcCCccCceeeeeehhhhHHHHHHHHHHHHHHHHHH
Q 002491 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (916)
Q Consensus 314 ~~dA~y~~~~titTvGygd~~~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~ 368 (916)
+.-++||+..|+||.|---.|.+....+|.++=.++|+++||.++|-|.+.+.+.
T Consensus 184 Y~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred HHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 3568999999999999877777888999999999999999999999887777664
No 47
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=1.4 Score=49.15 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=112.1
Q ss_pred CeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc-CCCCC
Q 002491 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES-LPLET 721 (916)
Q Consensus 643 ~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~-a~I~~ 721 (916)
++|+|+|-|..+...++.+...-..+.-.++++... |.. ...++ -..+.++.-|||+...|++ ++.+.
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~~~~f~~vv~~~q--e~~--~~~~~-------~e~~~fh~fdaTs~~rl~~~~n~~~ 70 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYSNHNFYIVVVKNQ--ESL--IPKNY-------PETFAFHCFDATSSFRLLQVLNDEV 70 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhcCceEEEEEeech--hhc--ccccC-------cceEEEEEeCCccHHHHHHHhhhHh
Confidence 579999999999999988875534444445555421 111 11111 1246788999999998876 88999
Q ss_pred ccEEEEecCCCCcCccccCcHHHHHHHHHHHHhcccCCCCCCCCCccccccCCCcchhhHHhhhcCCcceEEEEEec--c
Q 002491 722 FDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILD--S 799 (916)
Q Consensus 722 adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~i~kl~ra~~~~~IisEi~d--~ 799 (916)
-|++|+.-|. -++.-+.=.+|...++. .+.| +...| +
T Consensus 71 ~~Afi~~qd~----------~et~~i~k~lr~~f~n~------------------------------e~ei-~~~~~~l~ 109 (471)
T COG3400 71 SDAFIIIQDF----------KETRIIHKILRTHFKNM------------------------------EVEI-SVKRDELE 109 (471)
T ss_pred hhhheehhhH----------HHHHHHHHHHHHhccCc------------------------------EEEE-EEEeCCCc
Confidence 9999997642 35666667777777653 0111 11122 2
Q ss_pred cchhhhhccCCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhcccCceEEEEcCcccccCCCCccHHHHHHHhccCCcEE
Q 002491 800 RTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIV 879 (916)
Q Consensus 800 ~~~~ll~~ag~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~~eG~el~i~~~~~~~~~~~~ltf~dl~~~~r~~g~il 879 (916)
.|.++-. .. .+.+-..++++...-. .=|++..--.++=-+.|.-+.+ . ++.++...|+-+.. .+++..-+
T Consensus 110 ~Nee~~d-~k-~~lid~~~vL~~~F~~--~Lp~I~~tp~~iGLgkGEImEI-~----vp~gSifaYrhi~s-I~qk~~RI 179 (471)
T COG3400 110 NNEENKD-EK-LILIDEFEVLANKFIS--RLPNIPSTPREIGLGKGEIMEI-D----VPFGSIFAYRHIGS-IRQKEYRI 179 (471)
T ss_pred cchhhcc-cc-eeecchHHHHHHHHHH--hcCCccccchhcccccceEEEE-e----cCCCchhhhhhhhh-hhhheeEE
Confidence 2222111 01 1122111112111110 0122221111111123332333 2 23356777777755 46777777
Q ss_pred EEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 880 IGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 880 IGi~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
+++-|.+ .+.+ |.. ..+++++|+|.|+|+.
T Consensus 180 vl~YRN~--klll-~~~---slvlqp~D~lLVvG~P 209 (471)
T COG3400 180 VLLYRND--KLLL-STK---SLVLQPRDILLVVGNP 209 (471)
T ss_pred EEEEECC--EEEE-ecc---ceEecCCCEEEEeCCh
Confidence 7766643 3444 664 8999999999999875
No 48
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.57 E-value=0.31 Score=51.21 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=56.6
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~-e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
..+++|+|.|+.+...++.|... +..|++++++. +.+..... ...+.+.. ..+..+++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~-------~~~i~~~~------~~~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVE-------EGKIRWKQ------KEFEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHh-------CCCEEEEe------cCCChhhcCC
Confidence 56999999999999999998763 35667776553 33333322 12344432 3455667889
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhh
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTG 489 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~ 489 (916)
|+.||++|++ ++.|..++..++.
T Consensus 71 adlViaaT~d------~elN~~i~~~a~~ 93 (202)
T PRK06718 71 AFLVIAATND------PRVNEQVKEDLPE 93 (202)
T ss_pred ceEEEEcCCC------HHHHHHHHHHHHh
Confidence 9999999987 7888887766643
No 49
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.46 E-value=0.086 Score=63.81 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=51.6
Q ss_pred eEEEecCCCcCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
.+.+.+.++++|+++.|+..+. +++.+++|+| +++. ..|.++++|++||.+++.|+.+++.++
T Consensus 221 ~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R---~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~~l 284 (562)
T TIGR03802 221 AYRVNRASSLIGKTVGDLENLFAGRVTIERIRR---DGKL-LTVSPDLVLNAGDVVLVVGRRDAVVQF 284 (562)
T ss_pred EEEECCCcccCCCcHHHHHhhhCCCeEEEEEEE---CCEE-EcCCCCCeeCCCCEEEEEECHHHHHHH
Confidence 4555556779999999998764 5899999987 4655 469999999999999999999876554
No 50
>PRK05326 potassium/proton antiporter; Reviewed
Probab=93.11 E-value=0.12 Score=62.66 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=50.1
Q ss_pred eEEEecCCCcCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
++.+.+.++++|++++|+... .++.++++.| +|+ .+.|+++++|++||++++++++++..+.
T Consensus 418 ~~~V~~~s~~~G~~l~el~lp-~~~~i~~v~R---~g~-~~~p~~~t~L~~GD~l~l~~~~~~l~~l 479 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRLP-RGALIALIIR---DGK-LLVPTGSTRLKAGDVLLVLGPERDLPAL 479 (562)
T ss_pred EEEECCCCcccCCCHHHcCCC-CCcEEEEEEE---CCE-EeCCCCCCeECCCCEEEEEECHHHHHHH
Confidence 444555678999999999643 4899999997 465 4799999999999999999998876544
No 51
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.08 E-value=0.64 Score=49.02 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=51.1
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
.++++|+|+|+.+..-++.|.+. |..|+|++....++..+ +.+.| .+.++.+++.. ++ ++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~---ga~VtVvsp~~~~~l~~-l~~~~---------~i~~~~~~~~~-~d-----l~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA---GAQLRVIAEELESELTL-LAEQG---------GITWLARCFDA-DI-----LEG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHH-HHHcC---------CEEEEeCCCCH-HH-----hCC
Confidence 45899999999999999999875 78899999766544333 33311 36678888773 33 456
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
++.|++.+++
T Consensus 70 ~~lVi~at~d 79 (205)
T TIGR01470 70 AFLVIAATDD 79 (205)
T ss_pred cEEEEECCCC
Confidence 8888777653
No 52
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.60 E-value=0.52 Score=49.54 Aligned_cols=71 Identities=11% Similarity=0.250 Sum_probs=48.7
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
.++++|+|+|+.|...++.|.+. |..|+|++....++..+ +.+.+ .+.+. ...++++.+..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~---ga~V~VIs~~~~~~l~~-l~~~~---------~i~~~------~~~~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY---GAHIVVISPELTENLVK-LVEEG---------KIRWK------QKEFEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCCCHHHHH-HHhCC---------CEEEE------ecCCChhhcCC
Confidence 56999999999999999999865 78899998644333222 22211 13332 23456677899
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
||.||+.+++
T Consensus 71 adlViaaT~d 80 (202)
T PRK06718 71 AFLVIAATND 80 (202)
T ss_pred ceEEEEcCCC
Confidence 9988887754
No 53
>PRK04972 putative transporter; Provisional
Probab=92.12 E-value=0.18 Score=61.02 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=50.8
Q ss_pred eEEEecCCCcCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
|..+...+++.|+|++|+..+.+++.+++|+|. + ..+.|.++++|+.||.|.+.|+.+++.+.
T Consensus 305 E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R~---g-~~~~~~~~~~L~~GD~LlVvG~~~~i~~l 367 (558)
T PRK04972 305 EEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIRS---Q-IEMPIDDNVVLNKGDVLQVSGDARRVKTI 367 (558)
T ss_pred EEEEEcCcccCCCCHHHhCCccCCeEEEEEecC---C-cccCCCCCCEecCCCEEEEEECHHHHHHH
Confidence 444555689999999999875578999999873 3 34567789999999999999999876553
No 54
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=91.90 E-value=0.12 Score=58.17 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhhhhccCCCCCcCC---ccCceeeeeehhhhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccceEEEE
Q 002491 312 SSFAEALWLSWTFVADSGNHADRVG---TGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILIL 388 (916)
Q Consensus 312 ~s~~dA~y~~~~titTvGygd~~~t---~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~l~~lr~G~~~~~~~~HIII~ 388 (916)
.+|..||-|++.|=||+|||--..| +.+-+..++-.+.|.++=++++|.+...+.+ -+++.-.....+|-|||
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar----PkKRAeTl~FS~~AVI~ 186 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR----PKKRAETLIFSDHAVIA 186 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----chhhhheeeeccceEEE
Confidence 3799999999999999999986433 2233334455577877778887776544332 22222234567888887
Q ss_pred ecc
Q 002491 389 GWS 391 (916)
Q Consensus 389 G~g 391 (916)
=-+
T Consensus 187 ~RD 189 (400)
T KOG3827|consen 187 LRD 189 (400)
T ss_pred eeC
Confidence 533
No 55
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.86 E-value=1.8 Score=45.65 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=59.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~-e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
..+++|+|.|..+..-++.|... +..|+|++.+. ++++.+.+ ..++.++.|+.. .++| ..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAE-------QGGITWLARCFD-ADIL-----EG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHH-------cCCEEEEeCCCC-HHHh-----CC
Confidence 45899999999999888888763 35666766543 34444322 126888888877 4444 56
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
++.||+.+++ .+.|..++..++..+
T Consensus 70 ~~lVi~at~d------~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 70 AFLVIAATDD------EELNRRVAHAARARG 94 (205)
T ss_pred cEEEEECCCC------HHHHHHHHHHHHHcC
Confidence 8999999876 567877777777653
No 56
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=91.84 E-value=0.2 Score=42.91 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 861 EEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 861 ~~ltf~dl~~~~r~~g~ilIGi~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
.+.+.+|+..+. ..+..++|++++ + ..+.|.+ ++++++||.|++++..
T Consensus 13 ~gk~l~el~l~~-~~~~~i~~i~R~-~--~~~~p~~---~~~l~~gD~l~v~g~~ 60 (71)
T PF02080_consen 13 VGKTLKELDLPE-RYGVRIVAIKRG-G--EIIIPDG---DTVLQAGDILIVVGDP 60 (71)
T ss_dssp TTEBHHHCTHHC-HHTEEEEEEEET-E--EEES--T---T-BE-TTEEEEEEEEH
T ss_pred CCCCHHHCCCCc-cCCEEEEEEEEC-C--EEECCCC---CCEECCCCEEEEEECH
Confidence 355666754321 139999999886 3 4677886 8999999999999864
No 57
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.63 E-value=0.24 Score=60.02 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=51.4
Q ss_pred ceEEEecCCCcCCCcHHhHhhh-----CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 554 AEFYIKRWPQLDDLRFEEVVIS-----FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~-----~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
.|..+...+++.|+|++|+..+ .+++.+.+|.|. |+. +.|.+|++|+.||++.+.|+.+++.+.
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R~---g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~~ 372 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKRD---DQP-LPILPETVLQRGDVVTLVGTPQDVDRA 372 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEeeC---Ccc-ccCCCCCEecCCCEEEEEeCHHHHHHH
Confidence 3444555689999999999854 468999999983 443 478999999999999999999876553
No 58
>PRK03818 putative transporter; Validated
Probab=91.52 E-value=0.25 Score=59.70 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=50.3
Q ss_pred eEEEecCCCcCCCcHHhHhhh-CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 555 EFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 555 ei~v~~~p~l~G~tf~el~~~-~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
|..+...++++|+|++|+..+ .+++.+.+|+|. | ..+.|.++++|+.||+|.+.|+.+++.+.
T Consensus 292 E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R~---g-~~l~~~~d~~Lq~GD~LlVvG~~~~i~~l 355 (552)
T PRK03818 292 ERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNRA---G-VELVASPDLSLQFGDILNLVGRPEAIDAV 355 (552)
T ss_pred EEEEEcChhccCCcHHHhcccccCCeEEEEEeEC---C-eecCCCCCCEEecCCEEEEEECHHHHHHH
Confidence 444455678999999999876 368999999983 4 34567889999999999999999876543
No 59
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.77 E-value=1.3 Score=51.00 Aligned_cols=76 Identities=24% Similarity=0.219 Sum_probs=56.1
Q ss_pred EEEEecchhHHHHHHHHHHhcccCCCCc-eEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccE
Q 002491 385 ILILGWSDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (916)
Q Consensus 385 III~G~g~~~~~ll~eL~~~~~~~~~~~-iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~a 463 (916)
|+|+|.|..+..+++.|.... .. .|++.+++.+.++...++. .+.++.++.-|..|.+.|.++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-----~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-----PFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-----CE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC-----CCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 789999998888888887532 23 8999999998887765432 345789999999999998887 888999
Q ss_pred EEEecCC
Q 002491 464 IIVLASD 470 (916)
Q Consensus 464 VIiltdd 470 (916)
||-+.+.
T Consensus 71 Vin~~gp 77 (386)
T PF03435_consen 71 VINCAGP 77 (386)
T ss_dssp EEE-SSG
T ss_pred EEECCcc
Confidence 9988864
No 60
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=90.18 E-value=0.55 Score=47.46 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhhhhccCCCCCc-C-----CccCceee-eeehhhhHHHHHHHHHHH
Q 002491 312 SSFAEALWLSWTFVADSGNHADR-V-----GTGPRIVS-VSISSGGMLIFAMMLGLV 361 (916)
Q Consensus 312 ~s~~dA~y~~~~titTvGygd~~-~-----t~~gRi~~-v~lil~Gi~ifa~~ig~i 361 (916)
.++..++|+++.++|+.|+|+.. . +..+.++. .++++++++++++++|.+
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 47999999999999999999974 3 55667766 566677778888888764
No 61
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=0.37 Score=49.16 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=40.0
Q ss_pred CCccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 861 EEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 861 ~~ltf~dl~~~~r~~g~ilIGi~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
.+.|.+|+.. .-..|.-+|++||++ ++++||+. ++++.+||.||+-|.+
T Consensus 132 ~gktLg~l~L-~t~tGvrVIAIRRG~--~wi~~Pd~---~~~Ir~gDvLIarG~~ 180 (204)
T COG3273 132 AGKTLGELDL-ATNTGVRVIAIRRGE--RWIYGPDE---DTKIREGDVLIARGTD 180 (204)
T ss_pred cccchhhhcc-ccccceEEEEEecCC--ccccCCCc---cceeccCCEEEEecch
Confidence 4667788865 345699999999965 58999985 9999999999998853
No 62
>PRK03818 putative transporter; Validated
Probab=89.73 E-value=0.53 Score=56.97 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=51.5
Q ss_pred ceEEEecCCCcCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 554 ~ei~v~~~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
.++.+. .++++|+++.|+..+. .++.+.+++| ++ ....|.++++|++||.+++.|+.+++.++
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R---~g-~~~~p~~~~~L~~GDiLlV~G~~e~l~~l 270 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKR---GD-TLMVPSPDTIIQLGDLLHLVGQPEDLHKA 270 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEE---CC-EEECCCCCCccCCCCEEEEEECHHHHHHH
Confidence 456665 6778999999998764 5899999987 45 45678899999999999999999876544
No 63
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.63 E-value=4 Score=47.12 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=85.4
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
+.++|+|.|..+..++..|...+ ...|.+.+++++.++++.... ..++.++.=|+.+.+.|.++ +.+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-----d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-----DGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHH-HhcCC
Confidence 57999999998888888887543 279999999998888764421 23688899999999999876 44449
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCC----CHHHHHHcCCCeEEEechHHHHHHHHHHHHhc
Q 002491 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD----NEPLVKLVGGELIETVVAHDVIGRLMIQCALQ 538 (916)
Q Consensus 463 aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e----~~~~l~~~Gad~VevV~p~~l~a~lLa~~~~~ 538 (916)
.||.+.+. .-+..-+.+|+..+ ++.+--..+.+ ..+..+++|...| -.+=..
T Consensus 71 ~VIn~~p~----~~~~~i~ka~i~~g-------v~yvDts~~~~~~~~~~~~a~~Agit~v-------------~~~G~d 126 (389)
T COG1748 71 LVINAAPP----FVDLTILKACIKTG-------VDYVDTSYYEEPPWKLDEEAKKAGITAV-------------LGCGFD 126 (389)
T ss_pred EEEEeCCc----hhhHHHHHHHHHhC-------CCEEEcccCCchhhhhhHHHHHcCeEEE-------------cccCcC
Confidence 99999875 22444444554442 22333222222 3444566775431 234567
Q ss_pred CcHHHHHHH
Q 002491 539 PGLAQIWED 547 (916)
Q Consensus 539 Pg~~~vl~~ 547 (916)
||+.+++..
T Consensus 127 PGi~nv~a~ 135 (389)
T COG1748 127 PGITNVLAA 135 (389)
T ss_pred cchHHHHHH
Confidence 888877653
No 64
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.59 E-value=3.7 Score=46.66 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=61.3
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChH---------------------HHHHHHHhhhcccCCcc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e---------------------~ve~~l~~~~~~~~~~~ 439 (916)
.+.||+|+|.|..+..+++.|..+.. ..++++|.|.- +.+.+.+++..-..+..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 35699999999999999999986531 36777887741 12222122111123445
Q ss_pred EEEEEECCCCHHHHhccCcccccEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 440 V~~i~GD~t~~e~L~rAgi~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
+..+.++.+. +.+++. ++++|.||..+|+ .+....+.-.+++.+
T Consensus 98 i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~------~~~r~~in~~~~~~~ 141 (338)
T PRK12475 98 IVPVVTDVTV-EELEEL-VKEVDLIIDATDN------FDTRLLINDLSQKYN 141 (338)
T ss_pred EEEEeccCCH-HHHHHH-hcCCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 6677777653 344443 6789999999965 555555555555543
No 65
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=88.50 E-value=5.9 Score=42.35 Aligned_cols=85 Identities=12% Similarity=0.006 Sum_probs=56.8
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
..+++|+|.|+.+.+=++.|.... -.|.|+ ..-.+++..... ...+.++..+. ++++| +.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g------A~VtVVap~i~~el~~l~~-------~~~i~~~~r~~-~~~dl-----~g 85 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG------CYVYILSKKFSKEFLDLKK-------YGNLKLIKGNY-DKEFI-----KD 85 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----CC
Confidence 458999999998888788887643 344444 433334444322 23466776654 45555 56
Q ss_pred ccEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 461 A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
|..||+.|+| .+.|-.++-.++..+
T Consensus 86 ~~LViaATdD------~~vN~~I~~~a~~~~ 110 (223)
T PRK05562 86 KHLIVIATDD------EKLNNKIRKHCDRLY 110 (223)
T ss_pred CcEEEECCCC------HHHHHHHHHHHHHcC
Confidence 8999999987 677888887777653
No 66
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=88.41 E-value=4.6 Score=40.75 Aligned_cols=69 Identities=26% Similarity=0.181 Sum_probs=54.4
Q ss_pred EEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccE
Q 002491 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (916)
Q Consensus 385 III~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~a 463 (916)
|+|+|. |..+..++++|... ++.|++.-++++..+. ..++.++.||..+++.+.++ +..+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-hhhcch
Confidence 689996 77888899999864 3777777777776553 24688999999999888875 448999
Q ss_pred EEEecCC
Q 002491 464 IIVLASD 470 (916)
Q Consensus 464 VIiltdd 470 (916)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 9998864
No 67
>PRK04972 putative transporter; Provisional
Probab=87.08 E-value=1 Score=54.53 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=45.0
Q ss_pred cCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 564 LDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 564 l~G~tf~el~~~~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
+.||+++|+..+. .++.+..|+| +++ ...|.++++|++||++++.|+.+++.+.
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R---~g~-~~~p~~dt~L~~GDiL~V~G~~e~l~~l 282 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRR---NGI-LANPDGDAVLQMGDEIALVGYPDAHARL 282 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEE---CCE-EecCCCCCEeCCCCEEEEEECHHHHHHH
Confidence 3799999998764 5899999987 455 4778999999999999999999876443
No 68
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=86.48 E-value=0.69 Score=53.10 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCcCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 002491 561 WPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (916)
Q Consensus 561 ~p~l~G~tf~el~~~~~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~ 620 (916)
..+++|+.+++++.. +.+.+.+|.| || ..+.|.++++|++||.+++++.+.+...
T Consensus 422 ~~~~ig~~lr~l~~p-~~~~~~~v~R---d~-q~i~p~g~t~l~~gD~l~v~~~~~d~~~ 476 (574)
T COG3263 422 DKWCVGAALRNLRMP-KWTRIAAVFR---DG-QLIHPQGSTRLREGDVLCVIGSERDLRA 476 (574)
T ss_pred CCcccchhhhhccCC-ccceeeeEEe---cC-ceeccCCCceeecCCEEEEEeccccHHH
Confidence 357899999998631 3678888887 35 4689999999999999999999876543
No 69
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=85.84 E-value=1.9 Score=45.73 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=56.3
Q ss_pred EEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002491 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (916)
Q Consensus 645 ilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ad 723 (916)
|+|.|. |..|..+++.|.+ ++.+|+++-..+..++.+.+.+.| +.++.+|..+.+.|.++ +..+|
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~g----------~~vv~~d~~~~~~l~~a-l~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQALG----------AEVVEADYDDPESLVAA-LKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHTT----------TEEEES-TT-HHHHHHH-HTTCS
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhccc----------ceEeecccCCHHHHHHH-HcCCc
Confidence 688997 8889999999987 478899888777666666666533 24579999999999876 78999
Q ss_pred EEEEecCC
Q 002491 724 SILILADE 731 (916)
Q Consensus 724 avIilad~ 731 (916)
+|+++...
T Consensus 67 ~v~~~~~~ 74 (233)
T PF05368_consen 67 AVFSVTPP 74 (233)
T ss_dssp EEEEESSC
T ss_pred eEEeecCc
Confidence 99988863
No 70
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.78 E-value=3.1 Score=41.97 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=53.4
Q ss_pred EEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002491 645 ILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (916)
Q Consensus 645 ilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ad 723 (916)
|+|.|. |..|..++++|.+. |.+|+.+...+. +.+. ...+.++.||..|.+.+.++ +..+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~R~~~--~~~~------------~~~~~~~~~d~~d~~~~~~a-l~~~d 62 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR---GHEVTALVRSPS--KAED------------SPGVEIIQGDLFDPDSVKAA-LKGAD 62 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TSEEEEEESSGG--GHHH------------CTTEEEEESCTTCHHHHHHH-HTTSS
T ss_pred eEEECCCChHHHHHHHHHHHC---CCEEEEEecCch--hccc------------ccccccceeeehhhhhhhhh-hhhcc
Confidence 689997 88899999999875 689999986543 2222 12367789999999888875 55899
Q ss_pred EEEEecCC
Q 002491 724 SILILADE 731 (916)
Q Consensus 724 avIilad~ 731 (916)
+|+.+...
T Consensus 63 ~vi~~~~~ 70 (183)
T PF13460_consen 63 AVIHAAGP 70 (183)
T ss_dssp EEEECCHS
T ss_pred hhhhhhhh
Confidence 99998864
No 71
>CHL00194 ycf39 Ycf39; Provisional
Probab=83.54 E-value=7.5 Score=43.34 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=51.6
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
++|+|+|. |-.|..++++|... |+.|+.+.++++..... . ..++.++.||.++++.|.++ ++.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~~~l-~-------~~~v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKASFL-K-------EWGAELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHhhhH-h-------hcCCEEEECCCCCHHHHHHH-HCCC
Confidence 36899996 55688889998753 46787777765443221 1 23578899999999998765 4568
Q ss_pred cEEEEecC
Q 002491 462 RAIIVLAS 469 (916)
Q Consensus 462 ~aVIiltd 469 (916)
|.||-+..
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 88888764
No 72
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=83.44 E-value=5.6 Score=42.55 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
...+++|+|+|+.+..=++.|.++ |..|+||.....+|..+ +.+. . .+.+++.++. +++ ++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~---gA~VtVVap~i~~el~~-l~~~-------~--~i~~~~r~~~-~~d-----l~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK---GCYVYILSKKFSKEFLD-LKKY-------G--NLKLIKGNYD-KEF-----IK 84 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCCCCHHHHH-HHhC-------C--CEEEEeCCCC-hHH-----hC
Confidence 356999999999998777777665 78899998765444433 3221 1 2555666653 333 36
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
.++-|++.+++
T Consensus 85 g~~LViaATdD 95 (223)
T PRK05562 85 DKHLIVIATDD 95 (223)
T ss_pred CCcEEEECCCC
Confidence 68878877654
No 73
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=83.41 E-value=6.6 Score=36.61 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=52.3
Q ss_pred CCCcEEecHHHHHHHHHHHHhhhhHHHHHHHHhcc--------------------cCceEEEEcCcccccCCCCccHHHH
Q 002491 809 RISDYVLSNELVSMALAMVAEDKQINRVLEELFAE--------------------EGNEMCIKPAEFYLFDQEEISFFDI 868 (916)
Q Consensus 809 g~~d~V~S~~lvs~~lA~~a~~p~v~~vl~eLl~~--------------------eG~el~i~~~~~~~~~~~~ltf~dl 868 (916)
.++++|.-.++--.+||+...-||+..++-.|+.. -++++|-.+.+... .+++|.++
T Consensus 9 ~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f---~G~~F~~~ 85 (101)
T PF03493_consen 9 FADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAF---VGMTFTEA 85 (101)
T ss_dssp TT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGG---TTSBHHHH
T ss_pred cCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhh---CCCcHHHH
Confidence 44778888899999999999999999999888652 13467766654433 68999999
Q ss_pred HHHh-ccCCcEEEEEE
Q 002491 869 MIRG-RQRQEIVIGYR 883 (916)
Q Consensus 869 ~~~~-r~~g~ilIGi~ 883 (916)
...+ ++.|.++||++
T Consensus 86 ~~~~~~~~~viLigIe 101 (101)
T PF03493_consen 86 ARLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHHS--EEEEEE
T ss_pred HHHHHHHcCcEEEEeC
Confidence 8866 45699999985
No 74
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=82.52 E-value=6.7 Score=41.57 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
...++|+|.|+.+..=++-|...+ .++.|+.+.-.+++....+. ..+.++. +..+.+.+.. |
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g-----a~v~Vvs~~~~~el~~~~~~-------~~i~~~~-~~~~~~~~~~-----~ 73 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG-----ADVTVVSPEFEPELKALIEE-------GKIKWIE-REFDAEDLDD-----A 73 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-----CEEEEEcCCccHHHHHHHHh-------cCcchhh-cccChhhhcC-----c
Confidence 458999999998888888777543 34555555444566665543 2355555 5666666655 8
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 462 ~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
..||+.|+| ...|-.+.-.++..+
T Consensus 74 ~lviaAt~d------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 74 FLVIAATDD------EELNERIAKAARERR 97 (210)
T ss_pred eEEEEeCCC------HHHHHHHHHHHHHhC
Confidence 999999987 456777777777754
No 75
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=82.14 E-value=7.8 Score=50.23 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=68.4
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccC--------CCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHH
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSI--------GGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~--------~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L 453 (916)
..+|+|+|.|..+...++.|.....-. .....|+++|.+++..+...+.+ .++..+..|.+|.+.|
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHHH
Confidence 559999999998888888886431100 11235888999987776654421 1456788899999998
Q ss_pred hccCcccccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEe
Q 002491 454 KKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM 502 (916)
Q Consensus 454 ~rAgi~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv 502 (916)
.++ ++.+|+||++++. ..+..++..+-+.+ .|++.+-
T Consensus 643 ~~~-v~~~DaVIsalP~-------~~H~~VAkaAieaG----kHvv~ek 679 (1042)
T PLN02819 643 LKY-VSQVDVVISLLPA-------SCHAVVAKACIELK----KHLVTAS 679 (1042)
T ss_pred HHh-hcCCCEEEECCCc-------hhhHHHHHHHHHcC----CCEEECc
Confidence 775 4569999999975 23344444444433 4566554
No 76
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.69 E-value=3.7 Score=41.64 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=39.3
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
-.+++|||||..+..+++.|... +-.|++.|.||-..-.+.. .+.++ . .|.++ +.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~alqA~~------dGf~v--~--------~~~~a-~~~a 79 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIRALQAAM------DGFEV--M--------TLEEA-LRDA 79 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHHHHHHHH------TT-EE--E---------HHHH-TTT-
T ss_pred CCEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHHHHHhhh------cCcEe--c--------CHHHH-HhhC
Confidence 35799999999999999998753 5799999999854322211 12222 2 23333 5688
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.+|..|..
T Consensus 80 di~vtaTG~ 88 (162)
T PF00670_consen 80 DIFVTATGN 88 (162)
T ss_dssp SEEEE-SSS
T ss_pred CEEEECCCC
Confidence 988888865
No 77
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=81.00 E-value=3.2 Score=47.85 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=52.2
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCC-eEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002491 645 ILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (916)
Q Consensus 645 ilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ad 723 (916)
|+|+|.|..|..+++.|.+.. +. ++++.+.+ .++.+.+.+. +....+..++.|..|.+.|+++ +.++|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va~r~--~~~~~~~~~~------~~~~~~~~~~~d~~~~~~l~~~-~~~~d 69 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVADRN--PEKAERLAEK------LLGDRVEAVQVDVNDPESLAEL-LRGCD 69 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEEESS--HHHHHHHHT--------TTTTEEEEE--TTTHHHHHHH-HTTSS
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEEECC--HHHHHHHHhh------ccccceeEEEEecCCHHHHHHH-HhcCC
Confidence 789999999999999998652 23 77888764 4566666541 1234577889999999999888 88889
Q ss_pred EEEEecC
Q 002491 724 SILILAD 730 (916)
Q Consensus 724 avIilad 730 (916)
.||-++.
T Consensus 70 vVin~~g 76 (386)
T PF03435_consen 70 VVINCAG 76 (386)
T ss_dssp EEEE-SS
T ss_pred EEEECCc
Confidence 9998775
No 78
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.21 E-value=20 Score=40.84 Aligned_cols=98 Identities=17% Similarity=0.068 Sum_probs=58.2
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChH---------------------HHHHHHHhhhcccCCcc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e---------------------~ve~~l~~~~~~~~~~~ 439 (916)
.+-+|+|+|.|..+..++..|..+.- ..++++|.|.- +.+.+.+++..-.....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~ 97 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR 97 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence 35799999999999999999986531 36778887631 11111111110012334
Q ss_pred EEEEEECCCCHHHHhccCcccccEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 440 V~~i~GD~t~~e~L~rAgi~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
+..+.++.+.. .+... ++++|.||.++++ .+......-.+++.+
T Consensus 98 v~~~~~~~~~~-~~~~~-~~~~DlVid~~Dn------~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 98 VEAIVQDVTAE-ELEEL-VTGVDLIIDATDN------FETRFIVNDAAQKYG 141 (339)
T ss_pred EEEEeccCCHH-HHHHH-HcCCCEEEEcCCC------HHHHHHHHHHHHHhC
Confidence 66666665543 33333 6789999999866 445555555555544
No 79
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=79.70 E-value=6.4 Score=43.19 Aligned_cols=71 Identities=25% Similarity=0.215 Sum_probs=54.9
Q ss_pred ccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc
Q 002491 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 381 ~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
...+++|.|... .+..++++|.. +|+.++|+.++.++++++.+++..+. +..+.++.-|.++++.+.+.--
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~------~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~ 76 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLAR------RGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLED 76 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHH------CCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHH
Confidence 356999999876 57788888875 46899999999999988876654322 4567888899999988887543
No 80
>PRK06914 short chain dehydrogenase; Provisional
Probab=79.37 E-value=7.8 Score=41.98 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=52.7
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
.+++|+|.+. .+..++++|.+ .|..|+++.++++..+...........+.++.++.+|.++++.+++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 77 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAK------KGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK 77 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4789999764 57778888864 25778888887766555433211101124688899999999887651
Q ss_pred CcccccEEEEecCC
Q 002491 457 SVSKARAIIVLASD 470 (916)
Q Consensus 457 gi~~A~aVIiltdd 470 (916)
.....+.+|.++..
T Consensus 78 ~~~~id~vv~~ag~ 91 (280)
T PRK06914 78 EIGRIDLLVNNAGY 91 (280)
T ss_pred hcCCeeEEEECCcc
Confidence 12345777777643
No 81
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=78.89 E-value=14 Score=39.02 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=48.6
Q ss_pred EEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChH--HHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKE--EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 385 III~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e--~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
|+|+|. |..+..+++.|... ++.|.+.-+++. ..+.+ + ..++.++.||..+++.|.++ ++.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l-~-------~~g~~vv~~d~~~~~~l~~a-l~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQL-Q-------ALGAEVVEADYDDPESLVAA-LKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHH-H-------HTTTEEEES-TT-HHHHHHH-HTTC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhh-h-------cccceEeecccCCHHHHHHH-HcCC
Confidence 678886 78899999999862 355655555432 22222 1 23567789999999999664 6799
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
++||++++.
T Consensus 66 d~v~~~~~~ 74 (233)
T PF05368_consen 66 DAVFSVTPP 74 (233)
T ss_dssp SEEEEESSC
T ss_pred ceEEeecCc
Confidence 999999974
No 82
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=78.86 E-value=12 Score=39.32 Aligned_cols=102 Identities=11% Similarity=0.105 Sum_probs=61.4
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.+++|.|+|..+..+++.|... |..|+++|.+++.++...+.+ +..++ +. +.+ ...++|
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~-------g~~~v--~~---~~l---~~~~~D 87 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELF-------GATVV--AP---EEI---YSVDAD 87 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHc-------CCEEE--cc---hhh---ccccCC
Confidence 4799999999888888888653 578889999987766553321 12222 11 222 223688
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecC----CCCHHHHHHcCCC
Q 002491 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVGGE 517 (916)
Q Consensus 463 aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d----~e~~~~l~~~Gad 517 (916)
.++-++-. ++...-.++++.. ..|+...++ ++..+.|+..|+.
T Consensus 88 v~vp~A~~---------~~I~~~~~~~l~~---~~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 88 VFAPCALG---------GVINDDTIPQLKA---KAIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred EEEecccc---------cccCHHHHHHcCC---CEEEECCcCccCCHhHHHHHHHCCCE
Confidence 88855432 2333334455542 234444555 5666778888864
No 83
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=78.30 E-value=9.2 Score=40.74 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=68.7
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh----------HHHHHHHHhhhcccCCccEEEE-EECCCC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVICR-SGSPLI 449 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~----------e~ve~~l~~~~~~~~~~~V~~i-~GD~t~ 449 (916)
...+++|.|+|.++..+++.|.+. +..+|.++|.+. +.++...+.. .+... .++..+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-----G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-------~~~~~~~~~~~~ 89 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-----GGKVLAVSDPDGYIYDPGITTEELINYAVALG-------GSARVKVQDYFP 89 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC-------CccccCcccccC
Confidence 346999999999999999888753 346888889887 5554432211 11111 234445
Q ss_pred HHHHhccCcccccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecC----CCCHHHHHHcCCCeEEEechH
Q 002491 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVGGELIETVVAH 525 (916)
Q Consensus 450 ~e~L~rAgi~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d----~e~~~~l~~~Gad~VevV~p~ 525 (916)
.+.+.. + +||.+|-++.. |+...-.++++ ++++|++.-| ++..+.|+..|+ ++.|+
T Consensus 90 ~~~l~~--~-~~DVlipaA~~---------~~i~~~~a~~l----~a~~V~e~AN~p~t~~a~~~L~~~Gi----~v~Pd 149 (217)
T cd05211 90 GEAILG--L-DVDIFAPCALG---------NVIDLENAKKL----KAKVVAEGANNPTTDEALRILHERGI----VVAPD 149 (217)
T ss_pred ccccee--c-cccEEeecccc---------CccChhhHhhc----CccEEEeCCCCCCCHHHHHHHHHCCc----EEECh
Confidence 455553 3 78988888754 22233333343 2456766544 344556777773 35566
Q ss_pred HHH
Q 002491 526 DVI 528 (916)
Q Consensus 526 ~l~ 528 (916)
.+.
T Consensus 150 ~~~ 152 (217)
T cd05211 150 IVA 152 (217)
T ss_pred HHh
Confidence 654
No 84
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=78.10 E-value=13 Score=34.44 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=48.5
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|.|+.+..-++.|... +-.|.++..+.+..+ + .+.+. .... + ..++.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~~~~~----~--------~i~~~-~~~~-----~-~~l~~~ 61 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA------GAKVTVISPEIEFSE----G--------LIQLI-RREF-----E-EDLDGA 61 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSEHHHH----T--------SCEEE-ESS------G-GGCTTE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEECCchhhhh----h--------HHHHH-hhhH-----H-HHHhhh
Confidence 56899999999988888888643 356666655542222 1 12232 2222 2 337779
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 462 ~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
+.|++.+++ .+.|-.+...+|+.+
T Consensus 62 ~lV~~at~d------~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 62 DLVFAATDD------PELNEAIYADARARG 85 (103)
T ss_dssp SEEEE-SS-------HHHHHHHHHHHHHTT
T ss_pred eEEEecCCC------HHHHHHHHHHHhhCC
Confidence 999999976 667777777777654
No 85
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.41 E-value=5.7 Score=45.87 Aligned_cols=77 Identities=19% Similarity=0.111 Sum_probs=60.7
Q ss_pred CeEEEEcccccHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 643 EKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 643 ~hilI~Gwg~~~~~li~~L~~~~~~g-~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
.++||+|.|.+|..++..|.+. + .+|++.+..+ +.|..+.+.. ..++..++-|+.+.+.|.++ |.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~---~d~~V~iAdRs~--~~~~~i~~~~-------~~~v~~~~vD~~d~~al~~l-i~~ 68 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN---GDGEVTIADRSK--EKCARIAELI-------GGKVEALQVDAADVDALVAL-IKD 68 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC---CCceEEEEeCCH--HHHHHHHhhc-------cccceeEEecccChHHHHHH-Hhc
Confidence 5799999999999999999864 4 7899998754 5666665432 11467789999999999988 667
Q ss_pred ccEEEEecCCC
Q 002491 722 FDSILILADES 732 (916)
Q Consensus 722 adavIilad~~ 732 (916)
+|.||.+....
T Consensus 69 ~d~VIn~~p~~ 79 (389)
T COG1748 69 FDLVINAAPPF 79 (389)
T ss_pred CCEEEEeCCch
Confidence 79999998753
No 86
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=77.23 E-value=8.3 Score=44.70 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=30.9
Q ss_pred cCCCHHHHHHHHHhhhhccCCCCC---c-CCccCceeeeeehhhh
Q 002491 310 SDSSFAEALWLSWTFVADSGNHAD---R-VGTGPRIVSVSISSGG 350 (916)
Q Consensus 310 e~~s~~dA~y~~~~titTvGygd~---~-~t~~gRi~~v~lil~G 350 (916)
.+.++.++++-++..+.|+|.+-. + -+..++++.++.|+.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 378999999999999999988532 2 4566777766666554
No 87
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=77.16 E-value=10 Score=40.69 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=51.2
Q ss_pred cceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCC-HHHHhccCcc
Q 002491 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI-LADLKKVSVS 459 (916)
Q Consensus 382 ~~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~-~e~L~rAgi~ 459 (916)
.+.|+|+|. |..+..++++|... ++.|++..++++....... .+.++.++.||.++ .+.+.++-..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhc
Confidence 457999996 66788888888752 4677766666654433211 12368899999998 4666544224
Q ss_pred cccEEEEecCC
Q 002491 460 KARAIIVLASD 470 (916)
Q Consensus 460 ~A~aVIiltdd 470 (916)
.++.||.++..
T Consensus 85 ~~d~vi~~~g~ 95 (251)
T PLN00141 85 DSDAVICATGF 95 (251)
T ss_pred CCCEEEECCCC
Confidence 78999887653
No 88
>PLN03223 Polycystin cation channel protein; Provisional
Probab=76.87 E-value=15 Score=48.07 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhhhhccCCCC-----C-c----CCccCcee-eeeehhhhHHHHHHHHHHHHHHHHHH
Q 002491 312 SSFAEALWLSWTFVADSGNHA-----D-R----VGTGPRIV-SVSISSGGMLIFAMMLGLVSDAISEK 368 (916)
Q Consensus 312 ~s~~dA~y~~~~titTvGygd-----~-~----~t~~gRi~-~v~lil~Gi~ifa~~ig~it~~i~~~ 368 (916)
.+|..+++-.+..+. |-.+ . . ....|.+| ..+++++.++++-+++++|.+.+.+-
T Consensus 1360 STf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1360 SDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred cCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776655443 3222 1 0 12345554 44555666777789999998888765
No 89
>CHL00194 ycf39 Ycf39; Provisional
Probab=76.59 E-value=12 Score=41.59 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=51.4
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCc
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~a 722 (916)
+|+|.|. |-.|..+++.|.+. |.+|+++...+ +....+. ...+.++.||.+|++.|.++ ++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~---g~~V~~l~R~~--~~~~~l~----------~~~v~~v~~Dl~d~~~l~~a-l~g~ 65 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE---GYQVRCLVRNL--RKASFLK----------EWGAELVYGDLSLPETLPPS-FKGV 65 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC---CCeEEEEEcCh--HHhhhHh----------hcCCEEEECCCCCHHHHHHH-HCCC
Confidence 6899997 77899999999864 78888887543 2222121 11356789999999999765 5678
Q ss_pred cEEEEecC
Q 002491 723 DSILILAD 730 (916)
Q Consensus 723 davIilad 730 (916)
|+|+-++.
T Consensus 66 d~Vi~~~~ 73 (317)
T CHL00194 66 TAIIDAST 73 (317)
T ss_pred CEEEECCC
Confidence 99888764
No 90
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=76.59 E-value=8.4 Score=48.04 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhhhhhc-------CC----CHHHHHHHHHhhhhccCCCCCc---CCccCceeeeeehhhhHH
Q 002491 291 LLFATIFLIIFGGLALYAVS-------DS----SFAEALWLSWTFVADSGNHADR---VGTGPRIVSVSISSGGML 352 (916)
Q Consensus 291 ll~~~l~li~~g~l~~~~ie-------~~----s~~dA~y~~~~titTvGygd~~---~t~~gRi~~v~lil~Gi~ 352 (916)
+++.+++++++|+++|+.+| +. -+.+||++++. .-|.||.-.+ .+.+..++.+++|.+|..
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVs-tRTAGFntVdls~Lspatlvl~iiLMyIGa~ 661 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVS-TRTAGFTVVDLSQLHPAIQVSYMLMMYVSVL 661 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcc-cccccccccchHhcChhHHHHHHHHHHhccC
Confidence 44667778888888888876 22 36888888864 4678997654 344555555555555533
No 91
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=76.37 E-value=10 Score=37.07 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=51.8
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
...+++|+|.|..+..++..|...+ -..|.++.++.++.+.+.+.+ .+..+.++. .+++. ..+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g-----~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-----~~~~~-~~~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG-----AKEITIVNRTPERAEALAEEF----GGVNIEAIP-----LEDLE-EALQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT-----SSEEEEEESSHHHHHHHHHHH----TGCSEEEEE-----GGGHC-HHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHc----Cccccceee-----HHHHH-HHHhh
Confidence 4679999999999999999997642 356888999998888776543 223343332 22333 23678
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
||.||..|+-
T Consensus 76 ~DivI~aT~~ 85 (135)
T PF01488_consen 76 ADIVINATPS 85 (135)
T ss_dssp ESEEEE-SST
T ss_pred CCeEEEecCC
Confidence 9999999876
No 92
>PRK09186 flagellin modification protein A; Provisional
Probab=76.34 E-value=10 Score=40.33 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=44.7
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
.+.++|+|.+. .+..++++|.+. +..|+++.++++..+....++.....+..+.++.+|.++++.+.++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 35789999865 577788888652 4678888887766655544321111223456678888888877553
No 93
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.18 E-value=15 Score=41.23 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=62.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|.|..+..+++.|... +...|+++++++++.+....++ +.. + .+.+++.++ +.+|
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~-----g~~~V~v~~r~~~ra~~la~~~-----g~~--~-----~~~~~~~~~-l~~a 239 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-----GVAEITIANRTYERAEELAKEL-----GGN--A-----VPLDELLEL-LNEA 239 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHc-----CCe--E-----EeHHHHHHH-HhcC
Confidence 56899999999888778777642 2467889999987766554432 111 1 123345443 6779
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHH
Q 002491 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (916)
Q Consensus 462 ~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~ 509 (916)
|.||.++....+ .++...+...... +..+++-+..|.+.+
T Consensus 240 DvVi~at~~~~~-----~~~~~~~~~~~~~---~~~~viDlavPrdi~ 279 (311)
T cd05213 240 DVVISATGAPHY-----AKIVERAMKKRSG---KPRLIVDLAVPRDIE 279 (311)
T ss_pred CEEEECCCCCch-----HHHHHHHHhhCCC---CCeEEEEeCCCCCCc
Confidence 999999976211 2322222221111 346888888877644
No 94
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.05 E-value=28 Score=32.51 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=48.1
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccE
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~a 463 (916)
++.|+|.|..+...+..+..... ...++-+.|.+++..+...+++ + +. -.++.+.|.... +.|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~---~~~v~~v~d~~~~~~~~~~~~~-----~--~~----~~~~~~~ll~~~--~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP---DFEVVAVCDPDPERAEAFAEKY-----G--IP----VYTDLEELLADE--DVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHT-----T--SE----EESSHHHHHHHT--TESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCC---CcEEEEEEeCCHHHHHHHHHHh-----c--cc----chhHHHHHHHhh--cCCE
Confidence 68999999988888888775421 2356668899998877664432 2 22 134455554433 7999
Q ss_pred EEEecCC
Q 002491 464 IIVLASD 470 (916)
Q Consensus 464 VIiltdd 470 (916)
|++.+++
T Consensus 66 V~I~tp~ 72 (120)
T PF01408_consen 66 VIIATPP 72 (120)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9999975
No 95
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=74.63 E-value=16 Score=43.79 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHhhhhccCCCCC-c--CCccC------ceeeeeehhhh-HHHHH
Q 002491 286 AKLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-R--VGTGP------RIVSVSISSGG-MLIFA 355 (916)
Q Consensus 286 ~~ll~ll~~~l~li~~g~l~~~~ie~~s~~dA~y~~~~titTvGygd~-~--~t~~g------Ri~~v~lil~G-i~ifa 355 (916)
.+.++.+++.+++++++++.+...+..++.++++-++.++.|+|-+-. + .+..+ +++.++.|+.| +.+++
T Consensus 397 ~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~ 476 (499)
T COG0168 397 RKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILT 476 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhh
Confidence 344556666777777777777766554799999999999999998642 1 22333 66655555555 44555
Q ss_pred HHHH
Q 002491 356 MMLG 359 (916)
Q Consensus 356 ~~ig 359 (916)
+++.
T Consensus 477 ~lv~ 480 (499)
T COG0168 477 VLVL 480 (499)
T ss_pred HHHh
Confidence 4444
No 96
>PRK04148 hypothetical protein; Provisional
Probab=74.60 E-value=4.9 Score=39.55 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=52.1
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.+++++|.| .+..++..|.+ .|+.|+.+|.+++.++.+.+ ..+.++.+|-.+++. .- -+.|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~------~G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~-~~--y~~a~ 79 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE------SGFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL-EI--YKNAK 79 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH------CCCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH-HH--HhcCC
Confidence 689999999 67778888874 36899999999988876643 246788999887642 11 24678
Q ss_pred EEEEecCC
Q 002491 463 AIIVLASD 470 (916)
Q Consensus 463 aVIiltdd 470 (916)
.|...-..
T Consensus 80 liysirpp 87 (134)
T PRK04148 80 LIYSIRPP 87 (134)
T ss_pred EEEEeCCC
Confidence 88887654
No 97
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=74.49 E-value=20 Score=40.75 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=53.1
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCC-eEEEEccCChH------------H-------HH----HHhhcCCCCccCc
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK------------E-------RE----KKLTDGGLDISGL 696 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~p~~------------e-------r~----~~l~~~gl~~~~l 696 (916)
...||+|+|-|..|..+++.|.+. |. .++++|.+..+ + +. +.+.+ .-
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~------in 93 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK------IN 93 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH------HC
Confidence 356899999999999999999865 64 79988864211 0 11 11111 12
Q ss_pred CCceEEEEEcCcCCHhHHhcCCCCCccEEEEecC
Q 002491 697 MNIKLVHREGNAVIRRHLESLPLETFDSILILAD 730 (916)
Q Consensus 697 ~~~~v~~i~GD~t~~~~L~~a~I~~adavIilad 730 (916)
+++.+..+.++.+. +.++++ ++++|.||..+|
T Consensus 94 p~v~i~~~~~~~~~-~~~~~~-~~~~DlVid~~D 125 (338)
T PRK12475 94 SEVEIVPVVTDVTV-EELEEL-VKEVDLIIDATD 125 (338)
T ss_pred CCcEEEEEeccCCH-HHHHHH-hcCCCEEEEcCC
Confidence 56777777887764 345544 788998888775
No 98
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=73.90 E-value=7.5 Score=50.35 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=57.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCCCe-------------EEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEc
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSE-------------LWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREG 706 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~-------------v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~G 706 (916)
...++|+|+|-|+.|...++.|.+. ++.+ ++|.+. +.++.+.+++ .+++ +..+..
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~la~------~~~~--~~~v~l 634 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL--YLKDAKETVE------GIEN--AEAVQL 634 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC--CHHHHHHHHH------hcCC--CceEEe
Confidence 3467999999999999999999754 2333 555554 3466666665 2334 345788
Q ss_pred CcCCHhHHhcCCCCCccEEEEecCC
Q 002491 707 NAVIRRHLESLPLETFDSILILADE 731 (916)
Q Consensus 707 D~t~~~~L~~a~I~~adavIilad~ 731 (916)
|.+|.+.|.++ +..+|+||+++..
T Consensus 635 Dv~D~e~L~~~-v~~~DaVIsalP~ 658 (1042)
T PLN02819 635 DVSDSESLLKY-VSQVDVVISLLPA 658 (1042)
T ss_pred ecCCHHHHHHh-hcCCCEEEECCCc
Confidence 99999988876 5569999998854
No 99
>PRK08251 short chain dehydrogenase; Provisional
Probab=73.66 E-value=13 Score=39.27 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=52.6
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
..++|.|.+. .+..++++|.+. +..|++++++++..+...........+.++.++.+|.++++.+.++
T Consensus 3 k~vlItGas~giG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAK------GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 4689999765 477788888752 4678888888776655443321111244688899999998876542
Q ss_pred -CcccccEEEEecC
Q 002491 457 -SVSKARAIIVLAS 469 (916)
Q Consensus 457 -gi~~A~aVIiltd 469 (916)
.....+.+|..+.
T Consensus 77 ~~~~~id~vi~~ag 90 (248)
T PRK08251 77 DELGGLDRVIVNAG 90 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 2235677777654
No 100
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.10 E-value=17 Score=44.12 Aligned_cols=83 Identities=10% Similarity=0.054 Sum_probs=56.1
Q ss_pred ccceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc-cc------CCccEEEEEECCCCHHH
Q 002491 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-DF------MGTSVICRSGSPLILAD 452 (916)
Q Consensus 381 ~~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~-~~------~~~~V~~i~GD~t~~e~ 452 (916)
..+.++|.|.+ ..|..++++|.. .|+.|+++.++.+..+.....+.. .. ...++.++.||.++.+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLK------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34578899874 567788888875 257888888887766544332110 00 01357899999999999
Q ss_pred HhccCcccccEEEEecCC
Q 002491 453 LKKVSVSKARAIIVLASD 470 (916)
Q Consensus 453 L~rAgi~~A~aVIiltdd 470 (916)
++++ +..+|.||.+...
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8763 5678988887654
No 101
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.85 E-value=19 Score=38.18 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=53.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
.+++|.|.+. .+..++++|... |..|++..++++..+...+.. ...+.++.++.+|.++++.++++--...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK------GHNVIAGVQIAPQVTALRAEA--ARRGLALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH--HhcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence 4799999865 577778888652 467777777765544332211 1123458889999999999988744478
Q ss_pred cEEEEecC
Q 002491 462 RAIIVLAS 469 (916)
Q Consensus 462 ~aVIiltd 469 (916)
+.+|-.+.
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 88887764
No 102
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.44 E-value=32 Score=37.81 Aligned_cols=72 Identities=24% Similarity=0.232 Sum_probs=44.6
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECC----CCHHHHhccCc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSP----LILADLKKVSV 458 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~----t~~e~L~rAgi 458 (916)
++|.|+|.|..+..++..|... ++.|.+++++++.++...+. +..+ -.|+. ....++.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~------g~~~--~~~~~~~~~~~~~~~~~--~ 64 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGAHLDALNEN------GLRL--EDGEITVPVLAADDPAE--L 64 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChHHHHHHHHc------CCcc--cCCceeecccCCCChhH--c
Confidence 3699999999888888888653 47899999877666654321 1111 01211 11112222 3
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
+.+|.||+++..
T Consensus 65 ~~~d~vila~k~ 76 (304)
T PRK06522 65 GPQDLVILAVKA 76 (304)
T ss_pred CCCCEEEEeccc
Confidence 789999999864
No 103
>PRK08267 short chain dehydrogenase; Provisional
Probab=72.40 E-value=17 Score=38.84 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=53.4
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--C-
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P- 718 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~- 718 (916)
++++|.|.+. .|..+++.|.+. |..|++++..+ +..+.+.+ .+.+..+.++++|.++++.++++ +
T Consensus 2 k~vlItGasg~iG~~la~~l~~~---G~~V~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE---GWRVGAYDINE--AGLAALAA------ELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCH--HHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4799999865 489999999764 78888887543 33333332 12233577889999998887653 1
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
-...|.+|-.++.
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 2356888887764
No 104
>PRK00536 speE spermidine synthase; Provisional
Probab=72.14 E-value=31 Score=37.85 Aligned_cols=100 Identities=19% Similarity=0.128 Sum_probs=60.1
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH---hhhcccCCccEEEEEECCCCHHHHhccC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA---KLEFDFMGTSVICRSGSPLILADLKKVS 457 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~---~~~~~~~~~~V~~i~GD~t~~e~L~rAg 457 (916)
.-.+|+|+|.|+ +..++|++... ..|+++|-|++.++...+ .....+.+.++.++. -+++..
T Consensus 72 ~pk~VLIiGGGD--Gg~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~~ 136 (262)
T PRK00536 72 ELKEVLIVDGFD--LELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDLD 136 (262)
T ss_pred CCCeEEEEcCCc--hHHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhcc
Confidence 457999999998 55677776532 389999999977664432 111224556676664 144444
Q ss_pred cccccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCC
Q 002491 458 VSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDL 505 (916)
Q Consensus 458 i~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~ 505 (916)
.++-|.||+-+.. +.... -..-|.+.| +.-++++...+
T Consensus 137 ~~~fDVIIvDs~~------~~~fy--~~~~~~L~~--~Gi~v~Qs~sp 174 (262)
T PRK00536 137 IKKYDLIICLQEP------DIHKI--DGLKRMLKE--DGVFISVAKHP 174 (262)
T ss_pred CCcCCEEEEcCCC------ChHHH--HHHHHhcCC--CcEEEECCCCc
Confidence 5678999987433 22222 123455666 34566665443
No 105
>PRK06194 hypothetical protein; Provisional
Probab=72.05 E-value=13 Score=40.30 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=54.5
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
.+++|.|.+. .+..++++|.. .|..|++++++.+..+...++... .+.++.++.+|.++.+.++++--
T Consensus 7 k~vlVtGasggIG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAA------LGMKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHH------CCCEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999765 56778888865 256788888887665554433211 23467889999999998876421
Q ss_pred ---ccccEEEEecCC
Q 002491 459 ---SKARAIIVLASD 470 (916)
Q Consensus 459 ---~~A~aVIiltdd 470 (916)
...|.+|-++..
T Consensus 79 ~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 79 ERFGAVHLLFNNAGV 93 (287)
T ss_pred HHcCCCCEEEECCCC
Confidence 235777777754
No 106
>PRK08309 short chain dehydrogenase; Provisional
Probab=71.79 E-value=17 Score=37.38 Aligned_cols=65 Identities=18% Similarity=0.060 Sum_probs=44.1
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
++++|.|.+..+..++++|... +..|++..++++..+....... ....+.++.+|.+|++.+.++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~------G~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~ 65 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK------GFHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLA 65 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHH
Confidence 4789999877778888888753 4678888888776655433211 123566777888888776653
No 107
>PRK06940 short chain dehydrogenase; Provisional
Probab=71.44 E-value=14 Score=40.30 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=41.8
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
+..+||.|.+..+..++++|. . +..|++++++++..+...+++. ..+.++.++.+|.++++.+.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~------G~~Vv~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dv~d~~~i~~ 66 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A------GKKVLLADYNEENLEAAAKTLR--EAGFDVSTQEVDVSSRESVKA 66 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEeecCCHHHHHH
Confidence 557889998877888888873 1 4678888888766554433221 112346667777777766544
No 108
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.12 E-value=15 Score=39.19 Aligned_cols=78 Identities=13% Similarity=-0.018 Sum_probs=54.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc--Cc-
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--gi- 458 (916)
.+++|.|.+. .+..++++|... +..|++++++++.++...... .+.++.++++|.++.+.+.++ ++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE------GWRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4689999876 467777888652 568888888887766553321 235688999999999988764 22
Q ss_pred ----ccccEEEEecCC
Q 002491 459 ----SKARAIIVLASD 470 (916)
Q Consensus 459 ----~~A~aVIiltdd 470 (916)
.+-|.+|.++.-
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 234777776643
No 109
>PRK10637 cysG siroheme synthase; Provisional
Probab=70.90 E-value=34 Score=40.64 Aligned_cols=86 Identities=16% Similarity=0.058 Sum_probs=55.7
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~ 459 (916)
...+++|+|.|+.+.+=++.|... +..|+++ ..-.+++..... ..++.++..+.. +++| +
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~-------~~~i~~~~~~~~-~~dl-----~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWAD-------AGMLTLVEGPFD-ESLL-----D 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCCC-hHHh-----C
Confidence 356999999999888878888754 2344444 332234443322 235777776654 4555 5
Q ss_pred cccEEEEecCCCCCChhhHHHHHHHHHHhhhc
Q 002491 460 KARAIIVLASDENADQSDARALRVVLSLTGVK 491 (916)
Q Consensus 460 ~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~ 491 (916)
.|+.||+.|+| .+.|-.+.-.++..+
T Consensus 72 ~~~lv~~at~d------~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 72 TCWLAIAATDD------DAVNQRVSEAAEARR 97 (457)
T ss_pred CCEEEEECCCC------HHHhHHHHHHHHHcC
Confidence 68889999977 567777777776643
No 110
>PRK07024 short chain dehydrogenase; Provisional
Probab=70.60 E-value=16 Score=39.14 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=52.1
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.++++|.|.+. .+..++++|... |..|++++++++.+++..+... ..+ ++.++.+|.++++.+.++-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~-~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ------GATLGLVARRTDALQAFAARLP--KAA-RVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcc--cCC-eeEEEEcCCCCHHHHHHHHHHH
Confidence 35899999765 577788888642 4678888988877665543321 112 6788999999988876531
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|..+.
T Consensus 73 ~~~~g~id~lv~~ag 87 (257)
T PRK07024 73 IAAHGLPDVVIANAG 87 (257)
T ss_pred HHhCCCCCEEEECCC
Confidence 123466666553
No 111
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=70.41 E-value=21 Score=36.85 Aligned_cols=79 Identities=18% Similarity=0.062 Sum_probs=52.5
Q ss_pred cceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
..+++|+|. |..+..+++.|... +..|+++.++++..+...+.+.. ..+..+...+..+.+++.+ -+.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~-~~~~ 97 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRA---RFGEGVGAVETSDDAARAA-AIKG 97 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHh---hcCCcEEEeeCCCHHHHHH-HHhc
Confidence 468999997 87777788877642 46788888888776655443211 1123355667778777654 3467
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
|+.||..+..
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 8988887765
No 112
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=70.34 E-value=6.5 Score=38.40 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=48.7
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g-~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
..++++|+|.|..+..++..|.+. | .+++|++.. .+|.+.+.+ .+.+..+..+.- +.+. ..+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nRt--~~ra~~l~~------~~~~~~~~~~~~-----~~~~-~~~ 73 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNRT--PERAEALAE------EFGGVNIEAIPL-----EDLE-EAL 73 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEESS--HHHHHHHHH------HHTGCSEEEEEG-----GGHC-HHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEECC--HHHHHHHHH------HcCccccceeeH-----HHHH-HHH
Confidence 467999999999999999999875 5 459999864 467777765 232322333332 2222 226
Q ss_pred CCccEEEEecC
Q 002491 720 ETFDSILILAD 730 (916)
Q Consensus 720 ~~adavIilad 730 (916)
.++|.||..+.
T Consensus 74 ~~~DivI~aT~ 84 (135)
T PF01488_consen 74 QEADIVINATP 84 (135)
T ss_dssp HTESEEEE-SS
T ss_pred hhCCeEEEecC
Confidence 77897777765
No 113
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=70.05 E-value=53 Score=31.77 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=26.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
+.+|+|+|.|..+..+++.|....- ..++++|.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcc
Confidence 4589999999999999999987542 4566676653
No 114
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.04 E-value=17 Score=39.09 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=51.1
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.+.++|.|.+. .+..++++|.+. |..|++++++++..+...... +.++.++.+|.++++.++++=
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA------GARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHH
Confidence 35788888754 577888888752 568888998877665554321 345778899999988876531
Q ss_pred ---cccccEEEEec
Q 002491 458 ---VSKARAIIVLA 468 (916)
Q Consensus 458 ---i~~A~aVIilt 468 (916)
....|.+|-..
T Consensus 75 ~~~~g~id~lv~~a 88 (261)
T PRK08265 75 VARFGRVDILVNLA 88 (261)
T ss_pred HHHhCCCCEEEECC
Confidence 12456666554
No 115
>PRK07326 short chain dehydrogenase; Provisional
Probab=69.95 E-value=18 Score=37.93 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=52.6
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+ ..+..++++|... +..|++++++++..+...+.+.. ..++.++.+|.++++.++++=
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE------GYKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC------CCEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHH
Confidence 4678999874 4678888888642 45788888887665554433211 145788999999998876432
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....+.||..+.
T Consensus 77 ~~~~~~~d~vi~~ag 91 (237)
T PRK07326 77 VAAFGGLDVLIANAG 91 (237)
T ss_pred HHHcCCCCEEEECCC
Confidence 135677776654
No 116
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=69.65 E-value=17 Score=35.69 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=48.8
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|.|..+..+++.|...+ ...|.+.+++++..+...++.. .. .+..+..+.+.+ +++|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-----~~~v~v~~r~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~----~~~~ 82 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-----AAKIVIVNRTLEKAKALAERFG-----EL--GIAIAYLDLEEL----LAEA 82 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHh-----hc--ccceeecchhhc----cccC
Confidence 468999999998889998886531 3678889998877766544321 00 011123333322 7899
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.||.++..
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999976
No 117
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.55 E-value=22 Score=37.76 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=51.6
Q ss_pred ccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc-
Q 002491 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (916)
Q Consensus 381 ~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi- 458 (916)
...+++|.|.+. .+..++++|... +..|+++.++++.++.....+ +..+.++.++.+|.+++++++++--
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l--~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQA------GAKVVLASRRVERLKELRAEI--EAEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH--HhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 346889998754 577788888642 467888888877665543321 1113357788899988887765321
Q ss_pred -----ccccEEEEecC
Q 002491 459 -----SKARAIIVLAS 469 (916)
Q Consensus 459 -----~~A~aVIiltd 469 (916)
...|.+|-.+.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 23566665553
No 118
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.53 E-value=18 Score=38.23 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=54.7
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.+. +..|++++++++..+........ +.++.++.+|.++++.++++-
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788998754 577788888753 46788999888766554433211 345788999999999987641
Q ss_pred --cccccEEEEecCC
Q 002491 458 --VSKARAIIVLASD 470 (916)
Q Consensus 458 --i~~A~aVIiltdd 470 (916)
....|.||-.+..
T Consensus 77 ~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 77 ERFGSVDILVNNAGT 91 (251)
T ss_pred HHhCCCCEEEECCCC
Confidence 2356777776643
No 119
>PRK07454 short chain dehydrogenase; Provisional
Probab=69.46 E-value=20 Score=37.74 Aligned_cols=79 Identities=20% Similarity=0.077 Sum_probs=51.8
Q ss_pred ceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+ ..+..++++|.+. +..|++++++++..+...+... ..+.++.++.+|.++++.+.++-
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKA------GWDLALVARSQDALEALAAELR--STGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 468888874 4677888888752 4678888888766554433221 12346788999999998776541
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
..+.|.+|-.+.
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 124677776654
No 120
>PRK07831 short chain dehydrogenase; Provisional
Probab=69.41 E-value=18 Score=38.79 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=43.7
Q ss_pred cceEEEEec-c-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 382 KNHILILGW-S-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 382 ~~HIII~G~-g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
...++|.|. | ..+..+++.|... |..|++++++++.++...++....+...++.++.+|.++++.+++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 467899997 4 4788889888753 456888888776665544322111112356677788887766554
No 121
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=69.41 E-value=16 Score=35.92 Aligned_cols=81 Identities=21% Similarity=0.189 Sum_probs=54.2
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d--~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-- 457 (916)
++++|.|.+. .+..++++|... ++..|+++.++ .+..+....++. ..+.++.++..|.++++.++++-
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-----g~~~v~~~~r~~~~~~~~~l~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-----GARVVILTSRSEDSEGAQELIQELK--APGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-----TTEEEEEEESSCHHHHHHHHHHHHH--HTTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CceEEEEeeeccccccccccccccc--ccccccccccccccccccccccccc
Confidence 3789999775 577888888764 24677777776 444554444332 23578899999999998877641
Q ss_pred ----cccccEEEEecCC
Q 002491 458 ----VSKARAIIVLASD 470 (916)
Q Consensus 458 ----i~~A~aVIiltdd 470 (916)
-..-+.+|....-
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 2255677766655
No 122
>PRK06138 short chain dehydrogenase; Provisional
Probab=69.38 E-value=19 Score=38.08 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=54.2
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.+. |..|+++.++.+..+....... .+..+.++.+|.++++.++++=
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE------GARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 34889999865 577788888752 4678888888766554433221 2345788999999998887641
Q ss_pred ---cccccEEEEecCC
Q 002491 458 ---VSKARAIIVLASD 470 (916)
Q Consensus 458 ---i~~A~aVIiltdd 470 (916)
..+.|.+|-++..
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356777776653
No 123
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=68.85 E-value=15 Score=44.74 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=56.1
Q ss_pred CCCCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhc----CCCCc-cCcCCceEEEEEcCcCCHhH
Q 002491 640 KYPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD----GGLDI-SGLMNIKLVHREGNAVIRRH 713 (916)
Q Consensus 640 ~~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~----~gl~~-~~l~~~~v~~i~GD~t~~~~ 713 (916)
+..+.++|.|. |..|..++++|.+. |..|+++.... ++.+.+.+ ..++. .......+.++.||.++.+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~---G~~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKL---GFRVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC---CCeEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34568999998 67799999999764 78888876543 33332221 01100 00011236789999999998
Q ss_pred HhcCCCCCccEEEEecCC
Q 002491 714 LESLPLETFDSILILADE 731 (916)
Q Consensus 714 L~~a~I~~adavIilad~ 731 (916)
++++ +..+|.||..++.
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8764 5678988887653
No 124
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=68.71 E-value=19 Score=38.35 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=51.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
+.++|.|.+. .+..++++|.. .|..|++++++++.++...... +.++.++.+|.++++.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQ------QGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHH------CCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHH
Confidence 3688999765 56777777764 2567888888887666543321 33578899999999887653
Q ss_pred -CcccccEEEEecC
Q 002491 457 -SVSKARAIIVLAS 469 (916)
Q Consensus 457 -gi~~A~aVIiltd 469 (916)
.....+.+|..+.
T Consensus 70 ~~~~~id~vi~~ag 83 (248)
T PRK10538 70 AEWRNIDVLVNNAG 83 (248)
T ss_pred HHcCCCCEEEECCC
Confidence 1135777776653
No 125
>PRK07063 short chain dehydrogenase; Provisional
Probab=68.65 E-value=20 Score=38.33 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=51.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.+. |..|++++++++..+...+++.....+.++.++.+|.++++.++++=
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFARE------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 4788889765 467788888752 56788888887766655443211112345778888988888776531
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....|.+|-.+.
T Consensus 82 ~~~g~id~li~~ag 95 (260)
T PRK07063 82 EAFGPLDVLVNNAG 95 (260)
T ss_pred HHhCCCcEEEECCC
Confidence 124566666554
No 126
>PLN02366 spermidine synthase
Probab=68.53 E-value=45 Score=37.53 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=52.2
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh---cccCCccEEEEEECCCCHHHHhccCc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~---~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
..+|+|+|.|. +.+++++.... ....|+++|.|++.++...+.+. ..+.+.++.++.||+... |++..-
T Consensus 92 pkrVLiIGgG~--G~~~rellk~~----~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~--l~~~~~ 163 (308)
T PLN02366 92 PKKVLVVGGGD--GGVLREIARHS----SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF--LKNAPE 163 (308)
T ss_pred CCeEEEEcCCc--cHHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH--HhhccC
Confidence 56899999996 55667776421 23578899999876664432211 113356799999997643 333323
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
++-|.||+-..+
T Consensus 164 ~~yDvIi~D~~d 175 (308)
T PLN02366 164 GTYDAIIVDSSD 175 (308)
T ss_pred CCCCEEEEcCCC
Confidence 468999886654
No 127
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=68.48 E-value=15 Score=39.02 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
.++++|+|+|..+..=++.|.+. |..++|+.....+|......++ .+.++. +.-+.+.|..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~---ga~v~Vvs~~~~~el~~~~~~~----------~i~~~~-~~~~~~~~~~----- 72 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKA---GADVTVVSPEFEPELKALIEEG----------KIKWIE-REFDAEDLDD----- 72 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---CCEEEEEcCCccHHHHHHHHhc----------Ccchhh-cccChhhhcC-----
Confidence 46899999999998888888764 8899999976533333333221 133344 4444444444
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
++-|++.++|
T Consensus 73 ~~lviaAt~d 82 (210)
T COG1648 73 AFLVIAATDD 82 (210)
T ss_pred ceEEEEeCCC
Confidence 7878887765
No 128
>PRK00536 speE spermidine synthase; Provisional
Probab=68.48 E-value=14 Score=40.48 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcC-CCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~-gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
..+++|||+|+|+-| .++|+.++ + .++++++-+ ++-.+...+. +---..+.+.++..+. .+++..
T Consensus 71 ~~pk~VLIiGGGDGg--~~REvLkh--~-~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLE--LAHQLFKY--D-THVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDLD 136 (262)
T ss_pred CCCCeEEEEcCCchH--HHHHHHCc--C-CeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhcc
Confidence 457899999999875 57777776 2 489999864 2333322220 0000124455555554 244555
Q ss_pred CCCccEEEEe
Q 002491 719 LETFDSILIL 728 (916)
Q Consensus 719 I~~adavIil 728 (916)
-+++|.||+-
T Consensus 137 ~~~fDVIIvD 146 (262)
T PRK00536 137 IKKYDLIICL 146 (262)
T ss_pred CCcCCEEEEc
Confidence 5789988884
No 129
>PRK06101 short chain dehydrogenase; Provisional
Probab=68.47 E-value=17 Score=38.58 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=44.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
+.++|.|.+. .+..++++|.. .|..|++++++++..+..... ..++.++.+|.++++.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~------~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK------QGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh------CCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHH
Confidence 3588999765 46678888864 256788899988766554321 23577889999999987764
No 130
>PRK05854 short chain dehydrogenase; Provisional
Probab=68.20 E-value=20 Score=40.01 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=44.4
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
...+||.|.+. .+..++++|... |..|+++.++.+..+...+++.....+.++.++..|.++.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~------G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA------GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence 45788899876 577788888753 5678888888776665544331111223466777777777766543
No 131
>PLN02214 cinnamoyl-CoA reductase
Probab=68.03 E-value=26 Score=39.56 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
.++++|.|. |-.|..+++.|.+. |..|+.+...++......+.+.. . ....+.++.||.++.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~----~-~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER---GYTVKGTVRNPDDPKNTHLRELE----G-GKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---cCEEEEEeCCchhhhHHHHHHhh----C-CCCcEEEEecCcCChHHHHHH-Hh
Confidence 457999998 67799999999764 78888776433211111111100 0 011366789999999888765 45
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
.+|.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999999864
No 132
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=67.92 E-value=16 Score=41.15 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=48.5
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCC-CHHHHhccCccc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL-ILADLKKVSVSK 460 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t-~~e~L~rAgi~~ 460 (916)
++|+|.|. |-.+..++++|... .++.|+.+++..+...... ...++.++.||.. +.+.+.++ +++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~-----~~~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET-----TDWEVYGMDMQTDRLGDLV-------NHPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC-----CCCeEEEEeCcHHHHHHhc-------cCCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 47999998 66688888888753 1367777777654333221 1235888999997 66666554 457
Q ss_pred ccEEEEec
Q 002491 461 ARAIIVLA 468 (916)
Q Consensus 461 A~aVIilt 468 (916)
++.||=++
T Consensus 69 ~d~ViH~a 76 (347)
T PRK11908 69 CDVILPLV 76 (347)
T ss_pred CCEEEECc
Confidence 88888443
No 133
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=67.54 E-value=69 Score=33.54 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.0
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d 420 (916)
.+-+|+|+|.|..+..+++.|.... -..++++|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-----v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-----VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-----CCeEEEecCC
Confidence 3579999999999999999998653 2467778877
No 134
>PLN02427 UDP-apiose/xylose synthase
Probab=67.43 E-value=17 Score=41.60 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=53.1
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
.++|+|.|.+ -.+..++++|... +++.|+.++++.+..+...... ......++.++.||.++.+.+.++ +..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~-----~g~~V~~l~r~~~~~~~l~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~-~~~ 86 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTE-----TPHKVLALDVYNDKIKHLLEPD-TVPWSGRIQFHRINIKHDSRLEGL-IKM 86 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhc-----CCCEEEEEecCchhhhhhhccc-cccCCCCeEEEEcCCCChHHHHHH-hhc
Confidence 3579999974 4577788888753 1367777776655443322110 000123688999999999998875 456
Q ss_pred ccEEEEecC
Q 002491 461 ARAIIVLAS 469 (916)
Q Consensus 461 A~aVIiltd 469 (916)
++.||=++.
T Consensus 87 ~d~ViHlAa 95 (386)
T PLN02427 87 ADLTINLAA 95 (386)
T ss_pred CCEEEEccc
Confidence 888887774
No 135
>PRK07062 short chain dehydrogenase; Provisional
Probab=67.42 E-value=22 Score=38.10 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=50.3
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
...++|.|.+. .+..++++|... |..|+++.++++..+...++......+.++.++.+|.++++.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA------GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 35788888865 577788888653 5678888888766555433321111223577788888888776543
Q ss_pred --CcccccEEEEecC
Q 002491 457 --SVSKARAIIVLAS 469 (916)
Q Consensus 457 --gi~~A~aVIiltd 469 (916)
.....|.+|-.+.
T Consensus 82 ~~~~g~id~li~~Ag 96 (265)
T PRK07062 82 EARFGGVDMLVNNAG 96 (265)
T ss_pred HHhcCCCCEEEECCC
Confidence 1123455555543
No 136
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.27 E-value=21 Score=37.49 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=52.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.++++|.|.+. .+..++++|.+ .|..|++++++++..+....+.. ..+.++.++.+|.++++.++++=
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~------~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAK------EGVNVGLLARTEENLKAVAEEVE--AYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHH--HhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45789999775 46677888864 24688888888766554433221 12346788899999998876541
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....+.+|..+.
T Consensus 79 ~~~~~~id~vi~~ag 93 (239)
T PRK07666 79 KNELGSIDILINNAG 93 (239)
T ss_pred HHHcCCccEEEEcCc
Confidence 135677776654
No 137
>PRK01581 speE spermidine synthase; Validated
Probab=67.11 E-value=42 Score=38.67 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=49.4
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcC-CC---CccCcCCceEEEEEcCcCCHhHHhc
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG-GL---DISGLMNIKLVHREGNAVIRRHLES 716 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~-gl---~~~~l~~~~v~~i~GD~t~~~~L~~ 716 (916)
.+++|+++|.|.-+ .++++.++ .+...|+++|-++ +..+...+. .+ ....+.+.++.++.||+.+ .|++
T Consensus 150 ~PkrVLIIGgGdG~--tlrelLk~-~~v~~It~VEIDp--eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~ 222 (374)
T PRK01581 150 DPKRVLILGGGDGL--ALREVLKY-ETVLHVDLVDLDG--SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSS 222 (374)
T ss_pred CCCEEEEECCCHHH--HHHHHHhc-CCCCeEEEEeCCH--HHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHh
Confidence 46799999987443 44555554 2346899999754 444433321 11 0112345567889999874 4554
Q ss_pred CCCCCccEEEEecC
Q 002491 717 LPLETFDSILILAD 730 (916)
Q Consensus 717 a~I~~adavIilad 730 (916)
. -+++|.|++-..
T Consensus 223 ~-~~~YDVIIvDl~ 235 (374)
T PRK01581 223 P-SSLYDVIIIDFP 235 (374)
T ss_pred c-CCCccEEEEcCC
Confidence 3 368999888543
No 138
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=67.08 E-value=25 Score=39.68 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=54.3
Q ss_pred ccceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcc
Q 002491 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (916)
Q Consensus 381 ~~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~ 459 (916)
..++|+|.|.+ -.+..++++|... +..|+++.++++..+....... .+.++.++.||.++.+.+.++ ++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~ 78 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQR------GYTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-VK 78 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-Hc
Confidence 45689999975 4577788888753 4677777666554333322211 124688899999999888775 44
Q ss_pred cccEEEEecCC
Q 002491 460 KARAIIVLASD 470 (916)
Q Consensus 460 ~A~aVIiltdd 470 (916)
+.+.||-++..
T Consensus 79 ~~d~Vih~A~~ 89 (353)
T PLN02896 79 GCDGVFHVAAS 89 (353)
T ss_pred CCCEEEECCcc
Confidence 67888888754
No 139
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=66.78 E-value=18 Score=39.40 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=49.5
Q ss_pred EEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC-----c
Q 002491 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-----V 458 (916)
Q Consensus 385 III~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-----i 458 (916)
|+|.|. |..+..++++|.+. ++.|.+..++++... ..++..+.||..|++.|.++= +
T Consensus 2 ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~ 64 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM 64 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence 678887 66788899998753 467888877765321 124556789999999998752 3
Q ss_pred cc-ccEEEEecCC
Q 002491 459 SK-ARAIIVLASD 470 (916)
Q Consensus 459 ~~-A~aVIiltdd 470 (916)
.. ++.++.++..
T Consensus 65 ~g~~d~v~~~~~~ 77 (285)
T TIGR03649 65 EPEISAVYLVAPP 77 (285)
T ss_pred CCceeEEEEeCCC
Confidence 45 8888877754
No 140
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=66.76 E-value=14 Score=40.51 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=50.3
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC-
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET- 721 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~- 721 (916)
+|+|.|. |-.|..++++|.+. ..+..|++++......+.+.+.+. ..+..+.++.||.++++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-HPDAEVIVLDKLTYAGNLENLADL------EDNPRYRFVKGDIGDRELVSRL-FTEH 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-CCCCEEEEecCCCcchhhhhhhhh------ccCCCcEEEEcCCcCHHHHHHH-Hhhc
Confidence 5899998 67799999999764 122677777632111111111110 0112356789999999988775 343
Q ss_pred -ccEEEEecCC
Q 002491 722 -FDSILILADE 731 (916)
Q Consensus 722 -adavIilad~ 731 (916)
+|.||-++..
T Consensus 73 ~~d~vi~~a~~ 83 (317)
T TIGR01181 73 QPDAVVHFAAE 83 (317)
T ss_pred CCCEEEEcccc
Confidence 8999988853
No 141
>PLN02780 ketoreductase/ oxidoreductase
Probab=66.45 E-value=43 Score=37.58 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=38.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCC
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t 448 (916)
...++|.|.+. .|..++++|... |..|++++++++.+++..++....+.+.++.++..|.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~------G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARK------GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 45788889876 577788888652 56788899998877765443211111234555555554
No 142
>PLN02650 dihydroflavonol-4-reductase
Probab=65.67 E-value=24 Score=39.85 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=51.3
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
+.+|+|.|... .+..++++|... ++.|++...+++..+.............++.++.||.++.+.+.++ ++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~ 77 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER------GYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRG 77 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC------CCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhC
Confidence 45899999754 578888888753 4566665555433322211100000112578899999999888764 456
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
++.||-++..
T Consensus 78 ~d~ViH~A~~ 87 (351)
T PLN02650 78 CTGVFHVATP 87 (351)
T ss_pred CCEEEEeCCC
Confidence 8888888754
No 143
>PRK10637 cysG siroheme synthase; Provisional
Probab=65.56 E-value=22 Score=42.13 Aligned_cols=72 Identities=18% Similarity=0.053 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
..++++|+|+|+.+..=++.|.++ |..|+||...-.+|..+. .+.| .+.++..++.. ++ ++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~---ga~v~visp~~~~~~~~l-~~~~---------~i~~~~~~~~~-~d-----l~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA---GARLTVNALAFIPQFTAW-ADAG---------MLTLVEGPFDE-SL-----LD 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCCCHHHHHH-HhCC---------CEEEEeCCCCh-HH-----hC
Confidence 357999999999988777777664 788999986544444332 2211 25566766643 33 35
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
.++.|++.++|
T Consensus 72 ~~~lv~~at~d 82 (457)
T PRK10637 72 TCWLAIAATDD 82 (457)
T ss_pred CCEEEEECCCC
Confidence 67767776654
No 144
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.46 E-value=25 Score=37.37 Aligned_cols=67 Identities=21% Similarity=0.158 Sum_probs=45.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
...++|.|.+. .+..++++|.+. +..|++++++++..+....... ..+.++.++.+|.++.+.+.++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~i~~~ 74 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE------GAKVVVADRDAAGGEETVALIR--EAGGEALFVACDVTRDAEVKAL 74 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHH
Confidence 35788998765 577788888753 4678888888766555443221 1234577888999888877653
No 145
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=65.44 E-value=25 Score=32.61 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~ 677 (916)
..++++|+|+|+.+..-++.|.+ .|..+++++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~---~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE---AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC---CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCEEEEECCc
Confidence 35799999999999988888864 48899999965
No 146
>PRK08643 acetoin reductase; Validated
Probab=65.26 E-value=24 Score=37.51 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=49.2
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|+|.+. .+..+++.|.+. +..|++++++++..+....... ..+.++.++.+|.++++.++++=
T Consensus 3 k~~lItGas~giG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED------GFKVAIVDYNEETAQAAADKLS--KDGGKAIAVKADVSDRDQVFAAVRQVV 74 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4788889876 467777777642 4678888887766555433221 11345777888888887765421
Q ss_pred --cccccEEEEec
Q 002491 458 --VSKARAIIVLA 468 (916)
Q Consensus 458 --i~~A~aVIilt 468 (916)
..+.+.+|-++
T Consensus 75 ~~~~~id~vi~~a 87 (256)
T PRK08643 75 DTFGDLNVVVNNA 87 (256)
T ss_pred HHcCCCCEEEECC
Confidence 12456666655
No 147
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=65.16 E-value=22 Score=38.03 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=43.5
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
++++|.|.+. .+..++++|... |..|++++++++.++...++... ..++.++.+|.++++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~ 65 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK------GARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKN 65 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHH
Confidence 3789999876 567788888653 46788888887766655443211 1246778888888877654
No 148
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=65.03 E-value=26 Score=37.29 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=51.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.+. |..|++.+++++..+...+... ..+.++.++.+|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDPAKLAAAAESLK--GQGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCceEEEEEccCCCHHHHHHHHHHH
Confidence 45788999754 577788888652 4678888888766655433321 11335778889999988876642
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|-...
T Consensus 82 ~~~~~~~d~li~~ag 96 (255)
T PRK07523 82 EAEIGPIDILVNNAG 96 (255)
T ss_pred HHhcCCCCEEEECCC
Confidence 123566666554
No 149
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.99 E-value=29 Score=43.13 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhhh--hccCCCCCc---CC---ccCce-eeeeehhhhHHHHHHHHHHHHHHHHH
Q 002491 313 SFAEALWLSWTFV--ADSGNHADR---VG---TGPRI-VSVSISSGGMLIFAMMLGLVSDAISE 367 (916)
Q Consensus 313 s~~dA~y~~~~ti--tTvGygd~~---~t---~~gRi-~~v~lil~Gi~ifa~~ig~it~~i~~ 367 (916)
+..|+|...+.++ .|+||||.+ .+ +.+.+ |.++++++-++++-++|+.+++...+
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4678777666666 679999965 22 23444 34456667777788888887765544
No 150
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=64.92 E-value=4.4 Score=46.28 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCC-HHHHHHHHHhhhhccCCCCC---c-CCcc---Cceeeeeehhhh
Q 002491 287 KLLALLFATIFLIIFGGLALYAVSDSS-FAEALWLSWTFVADSGNHAD---R-VGTG---PRIVSVSISSGG 350 (916)
Q Consensus 287 ~ll~ll~~~l~li~~g~l~~~~ie~~s-~~dA~y~~~~titTvGygd~---~-~t~~---gRi~~v~lil~G 350 (916)
+.+.++++.+++++++++.+...+... +.++++-++..+.|+|.+-. + .+.. ++++.+++|+.|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 267 KAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 344444555666666777766555433 69999999999999987532 1 2344 677666666555
No 151
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=64.90 E-value=89 Score=34.83 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=65.3
Q ss_pred eEEEEecc--hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 384 HILILGWS--DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 384 HIII~G~g--~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
++|=+|.| ..+..+++.+. .+..|+.+|.+++-++...++....+.+.++..++||..+...+..-.. ..
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~-------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~-~~ 137 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALR-------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPA-AG 137 (301)
T ss_pred eEEecCCCcchhHHHHHHhhc-------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccc-cC
Confidence 34435554 45555555542 1467899999987766655543222234567889999987543332111 23
Q ss_pred cEEEEecCC--CCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHcC
Q 002491 462 RAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVG 515 (916)
Q Consensus 462 ~aVIiltdd--~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~G 515 (916)
+.+++..+. .+-...|..+++..+ .+.+.| +...+.-+.-......+..+-
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i-~~~L~p--gG~~lig~d~~~~~~~~~~aY 190 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRI-RQLLGP--GGGLLIGVDLVKDPAVLEAAY 190 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHH-HHhcCC--CCEEEEeccCCCCHHHHHHhh
Confidence 455554433 232333444433332 345677 345666666666666555443
No 152
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=64.67 E-value=24 Score=39.23 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=50.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
...++|.|.+. .+..++++|... |+.|+++..+++..+.........-...++.++.||.++.+.++++ +++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~ 77 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR------GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDG 77 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC------CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcC
Confidence 35789999754 577788888753 4566666555433222111000000113578899999999988765 456
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
.+.||-++..
T Consensus 78 ~d~vih~A~~ 87 (325)
T PLN02989 78 CETVFHTASP 87 (325)
T ss_pred CCEEEEeCCC
Confidence 7888888754
No 153
>PRK12829 short chain dehydrogenase; Provisional
Probab=64.60 E-value=25 Score=37.47 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=52.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.+. ++.|+++.++++..+...... .+.++.++.+|.++++.+.++=
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEA------GARVHVCDVSEAALAATAARL----PGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHH----hcCceEEEEccCCCHHHHHHHHHHH
Confidence 46899999865 467778887642 567888888876655443321 1225678899999999876531
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.||-.+.
T Consensus 81 ~~~~~~~d~vi~~ag 95 (264)
T PRK12829 81 VERFGGLDVLVNNAG 95 (264)
T ss_pred HHHhCCCCEEEECCC
Confidence 235788887664
No 154
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.55 E-value=26 Score=36.70 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=52.6
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc-
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi- 458 (916)
.++++|.|.+ ..+..+++.|... +..|+++ .++++..+...+.... .+.++.++.+|.++++.+.++--
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~------g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKE------GAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 3589999975 4577788887642 4677777 8877665544433211 23458889999999998766421
Q ss_pred -----ccccEEEEecCC
Q 002491 459 -----SKARAIIVLASD 470 (916)
Q Consensus 459 -----~~A~aVIiltdd 470 (916)
...+.+|.....
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 246777776543
No 155
>PRK05993 short chain dehydrogenase; Provisional
Probab=64.50 E-value=21 Score=38.78 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=48.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--c
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i 458 (916)
...++|.|.+. .+..++++|.. .|..|++++++++.++.... .++.++.+|.++++.++++- +
T Consensus 4 ~k~vlItGasggiG~~la~~l~~------~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS------DGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHH
Confidence 35799999854 57777888764 25788888888876654421 24677889999988765531 1
Q ss_pred -----ccccEEEEec
Q 002491 459 -----SKARAIIVLA 468 (916)
Q Consensus 459 -----~~A~aVIilt 468 (916)
.+-|.+|-.+
T Consensus 70 ~~~~~g~id~li~~A 84 (277)
T PRK05993 70 LELSGGRLDALFNNG 84 (277)
T ss_pred HHHcCCCccEEEECC
Confidence 2346666554
No 156
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.36 E-value=26 Score=37.59 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=52.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.+. +..|++.+++++..+.....+. ..+.++.++.+|.++++.++++-
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~------G~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA------GATIVFNDINQELVDKGLAAYR--ELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788888876 467788888753 4678888888776665543321 12346788899999998876542
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|..+.
T Consensus 82 ~~~~~~id~li~~ag 96 (265)
T PRK07097 82 EKEVGVIDILVNNAG 96 (265)
T ss_pred HHhCCCCCEEEECCC
Confidence 124566666553
No 157
>PRK00811 spermidine synthase; Provisional
Probab=64.36 E-value=71 Score=35.36 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=52.7
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc---c-cCCccEEEEEECCCCHHHHhcc
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---D-FMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~---~-~~~~~V~~i~GD~t~~e~L~rA 456 (916)
...+|+++|.|. +.++.++... .....|+++|.|++.++...+.+.. . +...++.++.||+.. -+.+
T Consensus 76 ~p~~VL~iG~G~--G~~~~~~l~~----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGD--GGTLREVLKH----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE- 146 (283)
T ss_pred CCCEEEEEecCc--hHHHHHHHcC----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-
Confidence 346899999996 5666676542 1235799999999877655332210 0 135578999999865 3333
Q ss_pred CcccccEEEEecCC
Q 002491 457 SVSKARAIIVLASD 470 (916)
Q Consensus 457 gi~~A~aVIiltdd 470 (916)
.-++-|.||+-..+
T Consensus 147 ~~~~yDvIi~D~~d 160 (283)
T PRK00811 147 TENSFDVIIVDSTD 160 (283)
T ss_pred CCCcccEEEECCCC
Confidence 34578999886544
No 158
>PRK12939 short chain dehydrogenase; Provisional
Probab=64.04 E-value=28 Score=36.64 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=54.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.++++|.|.+. .+..++++|... ++.|++++++++..+....+.. ..+.++.++.+|.++++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA------GATVAFNDGLAAEARELAAALE--AAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 46889999754 577788888652 4677788887766555443321 12346888999999998876542
Q ss_pred ---cccccEEEEecCC
Q 002491 458 ---VSKARAIIVLASD 470 (916)
Q Consensus 458 ---i~~A~aVIiltdd 470 (916)
..+.+.+|-+..-
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1357777776643
No 159
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=63.87 E-value=8.1 Score=39.24 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCCh
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 679 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~ 679 (916)
-++++|||||..|.-+++.|... |..|+|.+.+|.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~---Ga~V~V~e~DPi 57 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL---GARVTVTEIDPI 57 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT---T-EEEEE-SSHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhC---CCEEEEEECChH
Confidence 57899999999999999999875 889999998764
No 160
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.77 E-value=28 Score=36.89 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=53.5
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
.+++|.|.+. .+..++++|.+. +..|++++++++..+....... ..+.++.++.+|.++++.+.++--
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE------GAKVVIADLNDEAAAAAAEALQ--KAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 5899999754 678888888752 5688888888766555433221 123467889999999998766421
Q ss_pred ---ccccEEEEecC
Q 002491 459 ---SKARAIIVLAS 469 (916)
Q Consensus 459 ---~~A~aVIiltd 469 (916)
...+.+|.++.
T Consensus 77 ~~~~~~d~vi~~a~ 90 (258)
T PRK12429 77 ETFGGVDILVNNAG 90 (258)
T ss_pred HHcCCCCEEEECCC
Confidence 24677777664
No 161
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=63.75 E-value=32 Score=38.51 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=52.2
Q ss_pred ceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 383 ~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
.+++|.|.. -.+..++++|.... .++.|++.+++........... ...++.++.||.++.+.+.++ ++..
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~-~~~i 75 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRA-LRGV 75 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHH-HhcC
Confidence 468888874 46888888887532 2356777776654333221111 123588899999999998875 4568
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.||-++..
T Consensus 76 D~Vih~Ag~ 84 (324)
T TIGR03589 76 DYVVHAAAL 84 (324)
T ss_pred CEEEECccc
Confidence 888887653
No 162
>PRK05866 short chain dehydrogenase; Provisional
Probab=63.68 E-value=26 Score=38.70 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=51.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.. .|..|++++++++.++...+.... .+.++.++.+|.++++.+.++-
T Consensus 41 k~vlItGasggIG~~la~~La~------~G~~Vi~~~R~~~~l~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFAR------RGATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH------CCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5788889754 57778888864 257888999888776655433211 1335778889998888765431
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....+.+|-.+.
T Consensus 113 ~~~g~id~li~~AG 126 (293)
T PRK05866 113 KRIGGVDILINNAG 126 (293)
T ss_pred HHcCCCCEEEECCC
Confidence 235677776654
No 163
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=63.59 E-value=89 Score=28.45 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=48.8
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.+|+-+|.|. +.+...|.... .+..|+-+|.+++.++.+.++........++.+++||. .......+..|
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~D 72 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLF----PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPFD 72 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHH----TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCEE
T ss_pred CEEEEEcCcC--CHHHHHHHhcC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCCC
Confidence 5788888885 34444444311 24679999999988776655442222456899999998 22233344588
Q ss_pred EEEEec
Q 002491 463 AIIVLA 468 (916)
Q Consensus 463 aVIilt 468 (916)
.|++..
T Consensus 73 ~v~~~~ 78 (112)
T PF12847_consen 73 LVICSG 78 (112)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888876
No 164
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=63.58 E-value=24 Score=37.72 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=50.2
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCC-HhHHhcCCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI-RRHLESLPL 719 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~-~~~L~~a~I 719 (916)
.++++|+|. |..|..+++.|.+. |..|+.+...+ ++.+.+.. .+..+.++.||.++ .+.|.++-.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~---g~~V~~~~R~~--~~~~~~~~--------~~~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK---GFAVKAGVRDV--DKAKTSLP--------QDPSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC---CCEEEEEecCH--HHHHHhcc--------cCCceEEEEeeCCCCHHHHHHHhh
Confidence 468999997 77899999999753 77787766433 23222211 11236678999988 455544311
Q ss_pred CCccEEEEecCC
Q 002491 720 ETFDSILILADE 731 (916)
Q Consensus 720 ~~adavIilad~ 731 (916)
..+|.|+..+..
T Consensus 84 ~~~d~vi~~~g~ 95 (251)
T PLN00141 84 DDSDAVICATGF 95 (251)
T ss_pred cCCCEEEECCCC
Confidence 478999987653
No 165
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=63.55 E-value=17 Score=37.62 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=49.4
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
.++++|+|+ |..|..+++.|.+. |..+++++.. .++.+.+.+. + ....+. .....|..+.+.+.++ +.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~---g~~V~l~~R~--~~~~~~l~~~-l--~~~~~~--~~~~~~~~~~~~~~~~-~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE---GARVVLVGRD--LERAQKAADS-L--RARFGE--GVGAVETSDDAARAAA-IK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEcCC--HHHHHHHHHH-H--HhhcCC--cEEEeeCCCHHHHHHH-Hh
Confidence 468999998 88999999998764 6788888754 3555554431 0 000122 2345677777666543 46
Q ss_pred CccEEEEecC
Q 002491 721 TFDSILILAD 730 (916)
Q Consensus 721 ~adavIilad 730 (916)
++|.||..+.
T Consensus 97 ~~diVi~at~ 106 (194)
T cd01078 97 GADVVFAAGA 106 (194)
T ss_pred cCCEEEECCC
Confidence 7887666554
No 166
>PRK06482 short chain dehydrogenase; Provisional
Probab=63.28 E-value=27 Score=37.77 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=53.5
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
++++|.|.+. .+..++++|... +..|+++.++++.++..... .+.++.++.+|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~------g~~v~~~~r~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR------GDRVAATVRRPDALDDLKAR-----YGDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHh-----ccCceEEEEccCCCHHHHHHHHHHHH
Confidence 5799999764 577788888753 46788888887766554332 123678899999999887764
Q ss_pred -CcccccEEEEecCC
Q 002491 457 -SVSKARAIIVLASD 470 (916)
Q Consensus 457 -gi~~A~aVIiltdd 470 (916)
.....+.||-++..
T Consensus 72 ~~~~~id~vi~~ag~ 86 (276)
T PRK06482 72 AALGRIDVVVSNAGY 86 (276)
T ss_pred HHcCCCCEEEECCCC
Confidence 12356888777654
No 167
>PRK07102 short chain dehydrogenase; Provisional
Probab=63.25 E-value=27 Score=36.91 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=51.7
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
.+++|.|.+. .+..++++|.+. |..|++++++++..+...++.. ...+.++.++.+|.++++.++++--
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA------GARLYLAARDVERLERLADDLR-ARGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHH-HhcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3789999654 577788888742 5678888888766554433221 1123468889999999988766411
Q ss_pred ccccEEEEec
Q 002491 459 SKARAIIVLA 468 (916)
Q Consensus 459 ~~A~aVIilt 468 (916)
.+.+.+|..+
T Consensus 75 ~~~d~vv~~a 84 (243)
T PRK07102 75 ALPDIVLIAV 84 (243)
T ss_pred hcCCEEEECC
Confidence 2347777654
No 168
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.18 E-value=28 Score=36.98 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=51.1
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
.+.++|.|.+. .+..++++|.+. |..|++++++++..+...++.. ..+.++.++.+|.++++.+.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA------GAHVLVNGRNAATLEAAVAALR--AAGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 45788888765 467778887642 5688889888766655443321 1234577889999998887653
Q ss_pred --CcccccEEEEecC
Q 002491 457 --SVSKARAIIVLAS 469 (916)
Q Consensus 457 --gi~~A~aVIiltd 469 (916)
...+.+.+|-...
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 1123456665543
No 169
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=63.15 E-value=15 Score=42.87 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g-~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
...+++|+|.|..+..+++.|.+. | ..++|.+. ..||.+.|++ ++ .|++...+.|.+. +
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNR--T~erA~~La~------~~--------~~~~~~l~el~~~-l 236 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK---GVKKITIANR--TLERAEELAK------KL--------GAEAVALEELLEA-L 236 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcC--CHHHHHHHHH------Hh--------CCeeecHHHHHHh-h
Confidence 457899999999999999999865 5 56777775 4578888876 22 2555555555544 8
Q ss_pred CCccEEEEecCC
Q 002491 720 ETFDSILILADE 731 (916)
Q Consensus 720 ~~adavIilad~ 731 (916)
..||.||..|..
T Consensus 237 ~~~DvVissTsa 248 (414)
T COG0373 237 AEADVVISSTSA 248 (414)
T ss_pred hhCCEEEEecCC
Confidence 899988887753
No 170
>PRK08017 oxidoreductase; Provisional
Probab=63.09 E-value=19 Score=38.13 Aligned_cols=59 Identities=15% Similarity=-0.000 Sum_probs=40.8
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
+.++|.|. |..+..++++|... |..|+++.++++.++...+ .++.++.+|.++.+.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR------GYRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHH
Confidence 46999998 66788888888742 4678888888766554321 235667788887776544
No 171
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=62.99 E-value=29 Score=36.96 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=43.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
+.++|.|.+. .+..+++.|.+. +..|++++++++..+...+.........++.++.+|.++++.+.++
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHH
Confidence 4588888875 477788887752 5688888887765544433221111113577788888887776654
No 172
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=62.77 E-value=30 Score=36.36 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=53.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--c
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i 458 (916)
.+.++|.|.+. .+..++++|.+. +..|+++.++++.......... ..+.++.++.+|.++++.++++- +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD------GAEVIVVDICGDDAAATAELVE--AAGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789999654 577788888753 4678888887655444433221 12345888999999998887742 1
Q ss_pred ----ccccEEEEecCC
Q 002491 459 ----SKARAIIVLASD 470 (916)
Q Consensus 459 ----~~A~aVIiltdd 470 (916)
...+.||-++..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 257877777643
No 173
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.66 E-value=29 Score=37.00 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=49.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc--
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi-- 458 (916)
...++|.|.+. .+..+++.|.+. |..|++++++.+..+...++. +..+.++.+|.++++.++++--
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE------GARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 34688998754 577788888752 578889998887666544322 2346778888888887765311
Q ss_pred ----ccccEEEEec
Q 002491 459 ----SKARAIIVLA 468 (916)
Q Consensus 459 ----~~A~aVIilt 468 (916)
...+.+|-++
T Consensus 75 ~~~~~~id~li~~a 88 (257)
T PRK07067 75 VERFGGIDILFNNA 88 (257)
T ss_pred HHHcCCCCEEEECC
Confidence 2355655544
No 174
>PRK07074 short chain dehydrogenase; Provisional
Probab=62.63 E-value=39 Score=35.93 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=53.0
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
+.++|.|. |..|..+++.|.+. |..++++...+ ++.+.+.+ .+.+..+.++++|.++.+.+.++-
T Consensus 3 k~ilItGat~~iG~~la~~L~~~---g~~v~~~~r~~--~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA---GDRVLALDIDA--AALAAFAD------ALGDARFVPVACDLTDAASLAAALANA 71 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------HhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 46888888 56699999999763 78888887543 33333332 122334677899999999875422
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 72 ~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 72 AAERGPVDVLVANAGA 87 (257)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1357988888764
No 175
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=62.63 E-value=54 Score=36.70 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=34.7
Q ss_pred ccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHh
Q 002491 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (916)
Q Consensus 381 ~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~ 430 (916)
...-.||.|.++ .|...++||.+ +|..|+|+.+++++++....+
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAk------rG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAK------RGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHH
Confidence 347789999987 47788999975 467899999999988876543
No 176
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.61 E-value=3.5 Score=40.18 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhccCCCCCcCCccCceeeeeehhhhHHHHHHHHHHHHHHHHHH
Q 002491 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (916)
Q Consensus 314 ~~dA~y~~~~titTvGygd~~~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~~ 368 (916)
+.+++|+++.++..-|.--.+.+..+|++.+++.++++++.+...+.++..+...
T Consensus 45 ~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6778887776666433333457789999999999999988888888777766543
No 177
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=62.45 E-value=27 Score=37.46 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=44.7
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
.+.++|.|.+. .+..++++|.+. |..|++++++++..+....+. +.++.++.+|.++++.++++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 70 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE------GARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRA 70 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHH
Confidence 35789999875 577788888753 567888898887766554321 23567788888888776643
No 178
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=62.19 E-value=17 Score=39.99 Aligned_cols=71 Identities=23% Similarity=0.189 Sum_probs=49.4
Q ss_pred eEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 384 HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.++|.|. |-.+..++++|... ++.|++++++++..+.. ...++.++.||.++.+.+.++ ++.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~-~~~~d 66 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQ------GEEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKA-VAGCR 66 (328)
T ss_pred eEEEECCccchhHHHHHHHHHC------CCEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5889987 55688888888753 46788887765432211 123577899999999988774 35678
Q ss_pred EEEEecC
Q 002491 463 AIIVLAS 469 (916)
Q Consensus 463 aVIiltd 469 (916)
.||-++.
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 8887764
No 179
>PRK06182 short chain dehydrogenase; Validated
Probab=62.08 E-value=21 Score=38.64 Aligned_cols=74 Identities=23% Similarity=0.098 Sum_probs=51.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..++++|.. .|+.|+++.++++.++.... .++.++.+|.++++.++++-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~------~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA------QGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHH
Confidence 35789999754 57778888764 35788888888876654321 24778899999998876642
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.+|..+.
T Consensus 69 ~~~~~~id~li~~ag 83 (273)
T PRK06182 69 IAEEGRIDVLVNNAG 83 (273)
T ss_pred HHhcCCCCEEEECCC
Confidence 125677777664
No 180
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=61.98 E-value=72 Score=33.59 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=52.9
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.+ ..|..++++|.+. |..|++++..+..+-.+.+.+. +..+.++.+|.++++.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~---G~~vi~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA---GADIVGAGRSEPSETQQQVEAL--------GRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEcCchHHHHHHHHHhc--------CCceEEEECCCCCHHHHHHHHHH
Confidence 4679999985 5699999999864 7888888754322222323221 12366789999999877531
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 74 ~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23467888887754
No 181
>PRK10750 potassium transporter; Provisional
Probab=61.94 E-value=51 Score=39.46 Aligned_cols=71 Identities=11% Similarity=0.098 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHhhhhccCCCC--C----c-CCccCceeeeeehhhh-HHHHHHHHH
Q 002491 288 LLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHA--D----R-VGTGPRIVSVSISSGG-MLIFAMMLG 359 (916)
Q Consensus 288 ll~ll~~~l~li~~g~l~~~~ie~~s~~dA~y~~~~titTvGygd--~----~-~t~~gRi~~v~lil~G-i~ifa~~ig 359 (916)
.+..+++.+++++++++++ ..++.++.+|+.-+..+++++|.+- . + -+..++++.++.|+.| +-++++++.
T Consensus 397 v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 397 VWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666655 5678899999999999999887753 2 2 3456788877777666 555554443
No 182
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=61.93 E-value=31 Score=35.97 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=53.1
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc--Cc-
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--gi- 458 (916)
.+++|.|.+. .+..++++|.+. ++.|+++.++++..+....... ..+.++.++.+|.++++.+.++ ++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD------GAKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 5799999754 577788888752 4668888888766554433221 1234577888999999887654 11
Q ss_pred ---ccccEEEEecCC
Q 002491 459 ---SKARAIIVLASD 470 (916)
Q Consensus 459 ---~~A~aVIiltdd 470 (916)
...+.+|-++..
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 235777777643
No 183
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=61.75 E-value=22 Score=41.25 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhhhcC-CCHHHHHHHHHhhhhccCCCCCc
Q 002491 296 IFLIIFGGLALYAVSD-SSFAEALWLSWTFVADSGNHADR 334 (916)
Q Consensus 296 l~li~~g~l~~~~ie~-~s~~dA~y~~~~titTvGygd~~ 334 (916)
+++.+++.+.|+. .+ .+++||++.++.+++|.||.-.+
T Consensus 111 ~~lt~l~~~~~~~-~g~~~~~~Aif~avSa~~taGFs~~~ 149 (390)
T TIGR00933 111 LLGTILLAVRFVL-TGWMPLFDAIFHSISAFNNGGFSTHS 149 (390)
T ss_pred HHHHHHHHHHHHH-hcchHHHHHHHHHHHHHhcCCcCCCC
Confidence 3334444444443 44 89999999999999999996543
No 184
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=61.75 E-value=25 Score=38.90 Aligned_cols=81 Identities=19% Similarity=0.105 Sum_probs=49.8
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..|+|.|. |-.+..++++|... |+.|+++.++.+............-...++.++.||.++++.+.++ ++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 77 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGC 77 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCC
Confidence 47999996 45678888888753 4666665554432111100000000123678999999998887765 4568
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
+.||-++..
T Consensus 78 d~Vih~A~~ 86 (322)
T PLN02662 78 EGVFHTASP 86 (322)
T ss_pred CEEEEeCCc
Confidence 888888754
No 185
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=61.71 E-value=19 Score=39.72 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=51.0
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCc
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~a 722 (916)
+++|.|. |-.|..+++.|.+. |.+|++++..+.. .. .+....+.++.||.++.+.|+++ ++.+
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~---g~~V~~~~r~~~~--~~----------~~~~~~~~~~~~D~~~~~~l~~~-~~~~ 65 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQ---GEEVRVLVRPTSD--RR----------NLEGLDVEIVEGDLRDPASLRKA-VAGC 65 (328)
T ss_pred eEEEECCccchhHHHHHHHHHC---CCEEEEEEecCcc--cc----------ccccCCceEEEeeCCCHHHHHHH-HhCC
Confidence 5899997 67799999999864 7888888864321 11 11222466789999999888775 4567
Q ss_pred cEEEEecC
Q 002491 723 DSILILAD 730 (916)
Q Consensus 723 davIilad 730 (916)
|.|+-++.
T Consensus 66 d~vi~~a~ 73 (328)
T TIGR03466 66 RALFHVAA 73 (328)
T ss_pred CEEEEece
Confidence 88887764
No 186
>PRK08219 short chain dehydrogenase; Provisional
Probab=61.67 E-value=26 Score=36.24 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=50.6
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--cc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i~ 459 (916)
++++|.|.+. .+..++++|... +.|++++++++..+..... ..++.++.||.++++.++++- +.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcC
Confidence 5789998765 577778887642 4577778776654443221 124778999999999887642 23
Q ss_pred cccEEEEecCC
Q 002491 460 KARAIIVLASD 470 (916)
Q Consensus 460 ~A~aVIiltdd 470 (916)
..+.+|-+...
T Consensus 71 ~id~vi~~ag~ 81 (227)
T PRK08219 71 RLDVLVHNAGV 81 (227)
T ss_pred CCCEEEECCCc
Confidence 57888877653
No 187
>PRK05867 short chain dehydrogenase; Provisional
Probab=61.60 E-value=33 Score=36.50 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=50.3
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.+. |..|++++++++..+...+++. ..+.++.++.+|.++++.++++-
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA------GAQVAIAARHLDALEKLADEIG--TSGGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 5688889864 577888888752 5678888888877665544321 12345677888888888765531
Q ss_pred --cccccEEEEec
Q 002491 458 --VSKARAIIVLA 468 (916)
Q Consensus 458 --i~~A~aVIilt 468 (916)
..+.|.+|-..
T Consensus 82 ~~~g~id~lv~~a 94 (253)
T PRK05867 82 AELGGIDIAVCNA 94 (253)
T ss_pred HHhCCCCEEEECC
Confidence 12455555544
No 188
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=61.57 E-value=87 Score=34.80 Aligned_cols=122 Identities=14% Similarity=0.235 Sum_probs=68.5
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|+|..+..+++.|... +..|++.+++++..+.... .+.. +...++|.+ -+.+|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~~~~~~~--------~g~~-----~~~~~~l~~-~l~~a 210 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSADLARITE--------MGLI-----PFPLNKLEE-KVAEI 210 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHH--------CCCe-----eecHHHHHH-HhccC
Confidence 35899999999888888888642 4578888988766544321 1111 122344443 24689
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCC--HHHHHHcCCCeEEEec-------hHHHHHHHH
Q 002491 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN--EPLVKLVGGELIETVV-------AHDVIGRLM 532 (916)
Q Consensus 462 ~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~--~~~l~~~Gad~VevV~-------p~~l~a~lL 532 (916)
|.||..++. .+...-.+..+.+ ..-+|=-..+|.- -+..++.|+..+ .+ .+...++++
T Consensus 211 DiVint~P~---------~ii~~~~l~~~k~--~aliIDlas~Pg~tdf~~Ak~~G~~a~--~~~glPg~~ap~ta~~i~ 277 (287)
T TIGR02853 211 DIVINTIPA---------LVLTADVLSKLPK--HAVIIDLASKPGGTDFEYAKKRGIKAL--LAPGLPGIVAPKTAGKIL 277 (287)
T ss_pred CEEEECCCh---------HHhCHHHHhcCCC--CeEEEEeCcCCCCCCHHHHHHCCCEEE--EeCCCCcccCchhHHHHH
Confidence 999988754 1111112233443 2223333333422 366778887653 22 245566666
Q ss_pred HHHH
Q 002491 533 IQCA 536 (916)
Q Consensus 533 a~~~ 536 (916)
++.+
T Consensus 278 ~~~~ 281 (287)
T TIGR02853 278 ANVL 281 (287)
T ss_pred HHHH
Confidence 6654
No 189
>PRK07109 short chain dehydrogenase; Provisional
Probab=61.49 E-value=30 Score=39.00 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=53.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..++++|... |..|+++.++++.++...++.. ..+.++.++.+|.+|++.++++-
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~------G~~Vvl~~R~~~~l~~~~~~l~--~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR------GAKVVLLARGEEGLEALAAEIR--AAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH--HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788889765 577778888652 4678888888776665543321 12446788999999999887651
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|-.+.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 124566665543
No 190
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.34 E-value=17 Score=42.64 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=47.4
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
.++++|+|.|+.|..+++.|.+. |..|++++..+.+...+.+.+ +....+.++.+|..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~---G~~V~~~d~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL---GAKVILTDEKEEDQLKEALEE-------LGELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCchHHHHHHHHH-------HHhcCCEEEeCCcchh------Hhhc
Confidence 47899999999999999999865 889999987542222111111 1111234567776652 2456
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
+|.||..++.
T Consensus 69 ~d~vv~~~g~ 78 (450)
T PRK14106 69 VDLVVVSPGV 78 (450)
T ss_pred CCEEEECCCC
Confidence 7877776653
No 191
>PRK05650 short chain dehydrogenase; Provisional
Probab=61.33 E-value=31 Score=37.19 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=51.1
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC-----
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg----- 457 (916)
+++|.|.+. .+..++++|... +..|++++++.+..+....... ..+.++.++.+|.++++.+.++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE------GWRLALADVNEEGGEETLKLLR--EAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 688998764 577888888752 5678888888766655443321 12446778889999988776531
Q ss_pred -cccccEEEEecC
Q 002491 458 -VSKARAIIVLAS 469 (916)
Q Consensus 458 -i~~A~aVIiltd 469 (916)
....+.+|-.+.
T Consensus 74 ~~~~id~lI~~ag 86 (270)
T PRK05650 74 KWGGIDVIVNNAG 86 (270)
T ss_pred HcCCCCEEEECCC
Confidence 124566666554
No 192
>PRK07890 short chain dehydrogenase; Provisional
Probab=61.27 E-value=31 Score=36.63 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=51.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
.+.++|.|.+. .+..++++|.. .|..|++++++++..+....+.. ..+.++.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAAR------AGADVVLAARTAERLDEVAAEID--DLGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHHHH--HhCCceEEEecCCCCHHHHHHHHHHH
Confidence 45788999865 56777777764 25688888888766555433221 1134577888899888877542
Q ss_pred --CcccccEEEEecC
Q 002491 457 --SVSKARAIIVLAS 469 (916)
Q Consensus 457 --gi~~A~aVIiltd 469 (916)
...+.|.+|-.+.
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 1235677776664
No 193
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=61.22 E-value=33 Score=36.58 Aligned_cols=80 Identities=24% Similarity=0.274 Sum_probs=52.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.. .+..|++++++++..+....... ..+.++.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGE------AGARVVLSARKAEELEEAAAHLE--ALGIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 36799999755 57777888864 24678888888766555433221 12345778999999988885421
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....+.+|-++.
T Consensus 84 ~~~~~~id~vi~~ag 98 (259)
T PRK08213 84 LERFGHVDILVNNAG 98 (259)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577777764
No 194
>PRK06197 short chain dehydrogenase; Provisional
Probab=61.09 E-value=27 Score=38.50 Aligned_cols=81 Identities=20% Similarity=0.146 Sum_probs=50.2
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..++++|... |..|+++.++++..+...+.......+.++.++.+|.++.+.++++-
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 35788888765 577788888753 46778888877665544332211112345778888888888776541
Q ss_pred ---cccccEEEEec
Q 002491 458 ---VSKARAIIVLA 468 (916)
Q Consensus 458 ---i~~A~aVIilt 468 (916)
..+.|.+|-.+
T Consensus 90 ~~~~~~iD~li~nA 103 (306)
T PRK06197 90 RAAYPRIDLLINNA 103 (306)
T ss_pred HhhCCCCCEEEECC
Confidence 22456666555
No 195
>PRK07576 short chain dehydrogenase; Provisional
Probab=61.03 E-value=31 Score=37.16 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=51.3
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.. .|..|++++++++..+........ .+.++.++.+|.++++.++++-
T Consensus 9 ~k~ilItGasggIG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFAR------AGANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 45899999865 56778888864 257788888887665544332211 1235678889999988876531
Q ss_pred ---cccccEEEEec
Q 002491 458 ---VSKARAIIVLA 468 (916)
Q Consensus 458 ---i~~A~aVIilt 468 (916)
....|.+|...
T Consensus 81 ~~~~~~iD~vi~~a 94 (264)
T PRK07576 81 ADEFGPIDVLVSGA 94 (264)
T ss_pred HHHcCCCCEEEECC
Confidence 12457777654
No 196
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=60.98 E-value=36 Score=39.22 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=48.5
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
...++|+|.|..+...++.+... |..|+++|.++++.+.+...+ +.. +..+..+.+.|.++ +.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~-l~~a 231 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA-VKRA 231 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH-HccC
Confidence 35699999999777777776542 357888999887766543321 111 22344566777665 6789
Q ss_pred cEEEEec
Q 002491 462 RAIIVLA 468 (916)
Q Consensus 462 ~aVIilt 468 (916)
|.||..+
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999876
No 197
>PRK09242 tropinone reductase; Provisional
Probab=60.89 E-value=33 Score=36.53 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=50.1
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
+.++|.|.+. .+..++++|.+. |..|+++.++++..+....++.....+.++.++.+|.++++.++++-
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4678888754 577788888652 46788888887766655443211112346778888888877654421
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
..+-|.+|.+..
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 123456665553
No 198
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=60.84 E-value=34 Score=37.16 Aligned_cols=85 Identities=7% Similarity=0.030 Sum_probs=54.0
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
..-+++|+|.|.++..+++..... |.+|+++++.++ .+. ...+++.. .++..++ ++.+.. +.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l---Gf~V~v~D~R~~-----~~~-----~~~~~~~~-~~~~~~~--~~~~~~--~~ 160 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL---PCRVTWVDSREA-----EFP-----EDLPDGVA-TLVTDEP--EAEVAE--AP 160 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC---CCEEEEEeCCcc-----ccc-----ccCCCCce-EEecCCH--HHHHhc--CC
Confidence 456899999999999999988754 899999996542 111 11234432 2233332 344443 45
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHH
Q 002491 721 TFDSILILADESLEDSIVHSDSRSLATLL 749 (916)
Q Consensus 721 ~adavIilad~~~~~~~~~~Da~~l~t~L 749 (916)
.-+.+|+++.+. .-|...+..+|
T Consensus 161 ~~t~vvi~th~h------~~D~~~L~~aL 183 (246)
T TIGR02964 161 PGSYFLVLTHDH------ALDLELCHAAL 183 (246)
T ss_pred CCcEEEEEeCCh------HHHHHHHHHHH
Confidence 677888888653 34666665555
No 199
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=60.61 E-value=19 Score=41.71 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=50.6
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHH--HHhhhcccCCccEEEEEECCCCHHHHhccCc
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~--l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
...++|.|.. ..+..++++|... ++.|+++.+++...+.. ..... ....++.++.||.+|++.+.++--
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRR------GYNVVAVAREKSGIRGKNGKEDTK--KELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEEechhhccccchhhHHh--hhcCCceEEEeeCCCHHHHHHHHH
Confidence 4478999974 4577888888752 46777777765432100 00000 012357899999999999987632
Q ss_pred c---cccEEEEecC
Q 002491 459 S---KARAIIVLAS 469 (916)
Q Consensus 459 ~---~A~aVIiltd 469 (916)
. .+|.||.+..
T Consensus 132 ~~~~~~D~Vi~~aa 145 (390)
T PLN02657 132 SEGDPVDVVVSCLA 145 (390)
T ss_pred HhCCCCcEEEECCc
Confidence 2 5888886543
No 200
>PRK06139 short chain dehydrogenase; Provisional
Probab=60.54 E-value=30 Score=39.09 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=53.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|.. .|..|+++.++++.+++..++.. ..+.++.++..|.++++.++++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~------~G~~Vvl~~R~~~~l~~~~~~~~--~~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFAR------RGARLVLAARDEEALQAVAEECR--ALGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHH------CCCEEEEEECCHHHHHHHHHHHH--hcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 45889999865 57777888865 25678889988877765544321 12446778888999988877642
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.+|-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 134566666654
No 201
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=60.41 E-value=1.1e+02 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.6
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d 420 (916)
||+|+|.|..+..+++.|....- ..+.++|.|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 68999999999999999987532 367777766
No 202
>PRK06500 short chain dehydrogenase; Provisional
Probab=60.36 E-value=37 Score=35.79 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=49.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
..+++|.|.+. .+..++++|... +..|++++++++..+...++. +.++.++++|.++.+.+.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAE------GARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 35899999865 577788888752 467888888876655543321 33567788888887765432
Q ss_pred --CcccccEEEEecC
Q 002491 457 --SVSKARAIIVLAS 469 (916)
Q Consensus 457 --gi~~A~aVIiltd 469 (916)
...+.|.+|-++.
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 1124566666553
No 203
>PRK05875 short chain dehydrogenase; Provisional
Probab=60.31 E-value=39 Score=36.41 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=52.3
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.+.++|.|.+ ..+..+++.|.+. |..|+++.++++..+...++......+.++.++.+|.++++.+.++-
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAA------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4688999975 4577788888652 56788888887665544332210001235778889999988776541
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.+|.++.
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 125677777664
No 204
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=60.17 E-value=27 Score=34.40 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccE
Q 002491 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (916)
Q Consensus 645 ilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ada 724 (916)
++|+|.|..+..+++..... |.++++++..++ ++++..- +...+ ..+.++...+...+.
T Consensus 1 L~I~GaG~va~al~~la~~l---g~~v~v~d~r~e---------------~~~~~~~-~~~~~--~~~~~~~~~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL---GFRVTVVDPRPE---------------RFPEADE-VICIP--PDDILEDLEIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC---TEEEEEEES-CC---------------C-TTSSE-EECSH--HHHHHHHC-S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhC---CCEEEEEcCCcc---------------ccCCCCc-cEecC--hHHHHhccCCCCCeE
Confidence 57999999999999988764 899999997532 2233221 22233 244556677887777
Q ss_pred EEEecCCCCcCccccCcHHHHHHHH
Q 002491 725 ILILADESLEDSIVHSDSRSLATLL 749 (916)
Q Consensus 725 vIilad~~~~~~~~~~Da~~l~t~L 749 (916)
| |++.+. .-|...+..+|
T Consensus 60 V-v~th~h------~~D~~~L~~~l 77 (136)
T PF13478_consen 60 V-VMTHDH------ELDAEALEAAL 77 (136)
T ss_dssp E-E--S-C------CCHHHHHHHHT
T ss_pred E-EEcCCc------hhHHHHHHHHH
Confidence 6 576543 45665555444
No 205
>PRK01581 speE spermidine synthase; Validated
Probab=60.04 E-value=1.1e+02 Score=35.30 Aligned_cols=80 Identities=24% Similarity=0.212 Sum_probs=52.6
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh------cccCCccEEEEEECCCCHHHHhc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE------FDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~------~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
..+|+|+|.|. +..++++.... ....|+++|.|++.++....-.. ..+.+.++.++.||+.+. |.+
T Consensus 151 PkrVLIIGgGd--G~tlrelLk~~----~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f--L~~ 222 (374)
T PRK01581 151 PKRVLILGGGD--GLALREVLKYE----TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF--LSS 222 (374)
T ss_pred CCEEEEECCCH--HHHHHHHHhcC----CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH--HHh
Confidence 45999999995 44566666421 23578999999987765532000 123456899999998853 433
Q ss_pred cCcccccEEEEecCC
Q 002491 456 VSVSKARAIIVLASD 470 (916)
Q Consensus 456 Agi~~A~aVIiltdd 470 (916)
. -++-|.||+-..+
T Consensus 223 ~-~~~YDVIIvDl~D 236 (374)
T PRK01581 223 P-SSLYDVIIIDFPD 236 (374)
T ss_pred c-CCCccEEEEcCCC
Confidence 2 3468999987755
No 206
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=59.91 E-value=36 Score=35.69 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=32.5
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhc
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD 688 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~ 688 (916)
.++++|.|+|+.|..+++.|.+. |.+|++.+.. .++.+.+.+
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~--~~~~~~~~~ 69 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADIN--EEAVARAAE 69 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCC--HHHHHHHHH
Confidence 46899999999999999999865 8889887754 345555443
No 207
>PRK08339 short chain dehydrogenase; Provisional
Probab=59.91 E-value=35 Score=36.78 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=44.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
..++|.|.+. .+..++++|.+. |..|++++++++..+...+++. ...+.++.++.+|.++++.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARA------GADVILLSRNEENLKKAREKIK-SESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH-hhcCCceEEEEecCCCHHHHHHH
Confidence 4678888865 577788888753 5678888988776655443221 11134577788888888776543
No 208
>PRK06181 short chain dehydrogenase; Provisional
Probab=59.88 E-value=36 Score=36.34 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
+.++|.|.+. .+..++++|... +..|++++++++..+...+... ..+.++.++.+|.++++.+.++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~------g~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA------GAQLVLAARNETRLASLAQELA--DHGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4689999855 567777787642 4678888888766555433221 1234677888999998876653
Q ss_pred -CcccccEEEEecC
Q 002491 457 -SVSKARAIIVLAS 469 (916)
Q Consensus 457 -gi~~A~aVIiltd 469 (916)
.....+.+|-++.
T Consensus 74 ~~~~~id~vi~~ag 87 (263)
T PRK06181 74 ARFGGIDILVNNAG 87 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 1124566666653
No 209
>PLN02214 cinnamoyl-CoA reductase
Probab=59.85 E-value=62 Score=36.55 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=51.6
Q ss_pred cceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHH-HHHhhhcccCCccEEEEEECCCCHHHHhccCcc
Q 002491 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEM-DIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (916)
Q Consensus 382 ~~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~-~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~ 459 (916)
.++++|.|. |-.+..++++|... ++.|+.+.++.+.... ...... ....++.++.||.++.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELE--GGKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhh--CCCCcEEEEecCcCChHHHHHH-Hh
Confidence 357999998 44577788888753 4677776665432111 111110 0123577899999999988765 44
Q ss_pred cccEEEEecCC
Q 002491 460 KARAIIVLASD 470 (916)
Q Consensus 460 ~A~aVIiltdd 470 (916)
.++.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999988864
No 210
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.64 E-value=33 Score=36.42 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=51.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.+. +..|+++.++++..+...++.. ..+.++.++.+|.++.+.++++-
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQDGANAVADEIN--KAGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChHHHHHHHHHHH--hcCceEEEEECCCCCHHHHHHHHHHHH
Confidence 5789999855 577888888752 4678888888766555444321 12345778899999988876541
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....+.+|-++.
T Consensus 80 ~~~~~~d~vi~~ag 93 (262)
T PRK13394 80 ERFGSVDILVSNAG 93 (262)
T ss_pred HHcCCCCEEEECCc
Confidence 123566666654
No 211
>PRK06914 short chain dehydrogenase; Provisional
Probab=59.56 E-value=58 Score=35.17 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCc-CCceEEEEEcCcCCHhHHhc----
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGL-MNIKLVHREGNAVIRRHLES---- 716 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l-~~~~v~~i~GD~t~~~~L~~---- 716 (916)
++++|.|.+ ..|..+++.|.+. |..|+++...++ ..+.+.+.- ... .+..+.++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~~---~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 75 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKK---GYLVIATMRNPE--KQENLLSQA---TQLNLQQNIKVQQLDVTDQNSIHNFQLV 75 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhC---CCEEEEEeCCHH--HHHHHHHHH---HhcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 578999985 5699999999763 888888875432 222221100 000 12347788999999988764
Q ss_pred -CCCCCccEEEEecCC
Q 002491 717 -LPLETFDSILILADE 731 (916)
Q Consensus 717 -a~I~~adavIilad~ 731 (916)
......|.+|..+..
T Consensus 76 ~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 76 LKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHhcCCeeEEEECCcc
Confidence 112456888888764
No 212
>PRK06924 short chain dehydrogenase; Provisional
Probab=59.39 E-value=26 Score=37.14 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=43.2
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~ 716 (916)
++++|.|. |..|..++++|.+. |..|+++...+. ++.+.+.+. .+..+.++.+|.++++.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~---g~~V~~~~r~~~-~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK---GTHVISISRTEN-KELTKLAEQ-------YNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc---CCEEEEEeCCch-HHHHHHHhc-------cCCceEEEEecCCCHHHHHH
Confidence 47899997 45699999999864 778888876542 233333221 12246678999999988754
No 213
>PRK06924 short chain dehydrogenase; Provisional
Probab=59.33 E-value=31 Score=36.47 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=41.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~-e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
++++|.|.+. .+..++++|.+. +..|+++.+++ +.++...+. .+.++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK------GTHVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc------CCEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHH
Confidence 4789999754 577888888752 45677777665 344433221 134577888899888877653
No 214
>PRK07074 short chain dehydrogenase; Provisional
Probab=59.13 E-value=44 Score=35.55 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=53.2
Q ss_pred ceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
..++|.|.+ ..+..+++.|.+. +..|++++++++..+...+.. .+..+.++.+|..+.+.+.++--
T Consensus 3 k~ilItGat~~iG~~la~~L~~~------g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA------GDRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888875 4677888888652 467888888877665544322 23457889999999998865322
Q ss_pred ---ccccEEEEecCC
Q 002491 459 ---SKARAIIVLASD 470 (916)
Q Consensus 459 ---~~A~aVIiltdd 470 (916)
...|.+|-+...
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 73 AERGPVDVLVANAGA 87 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 246788877754
No 215
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=58.80 E-value=16 Score=31.98 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=27.7
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEccC
Q 002491 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (916)
Q Consensus 644 hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~ 677 (916)
|++|+|.|-.|..++..|.+. |.++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~---g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL---GKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHh---CcEEEEEecc
Confidence 689999999999999999875 7899999864
No 216
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=58.77 E-value=38 Score=38.59 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=51.3
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCC-eEEEEccCChH------------H-------HHHHhhcCCCCccCcCCce
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEK------------E-------REKKLTDGGLDISGLMNIK 700 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~p~~------------e-------r~~~l~~~gl~~~~l~~~~ 700 (916)
...+|+|+|-|..|..++..|.+. |. .++++|.+..+ + +.+.+.+ -+. .--+++.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~-~l~-~inp~v~ 97 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKK-RLE-EINSDVR 97 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHH-HHH-HHCCCcE
Confidence 356899999999999999999865 65 89999864210 0 0111100 000 0014566
Q ss_pred EEEEEcCcCCHhHHhcCCCCCccEEEEecC
Q 002491 701 LVHREGNAVIRRHLESLPLETFDSILILAD 730 (916)
Q Consensus 701 v~~i~GD~t~~~~L~~a~I~~adavIilad 730 (916)
+..+..+.+... +.+. +..+|.||..+|
T Consensus 98 v~~~~~~~~~~~-~~~~-~~~~DlVid~~D 125 (339)
T PRK07688 98 VEAIVQDVTAEE-LEEL-VTGVDLIIDATD 125 (339)
T ss_pred EEEEeccCCHHH-HHHH-HcCCCEEEEcCC
Confidence 777777765443 3333 678998887765
No 217
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=58.53 E-value=32 Score=38.52 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=52.6
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
++++|.|. |-.|..+++.|.+. ..+.+|++++..+. ....+.+ .+.+..+.++.||.+|.+.|.++ ++.
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~-g~~~~V~~~~r~~~--~~~~~~~------~~~~~~~~~v~~Dl~d~~~l~~~-~~~ 74 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDEL--KQWEMQQ------KFPAPCLRFFIGDVRDKERLTRA-LRG 74 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHh-CCCcEEEEEcCChh--HHHHHHH------HhCCCcEEEEEccCCCHHHHHHH-Hhc
Confidence 57999998 56799999999864 12357887764322 1111211 11122467789999999998775 456
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
+|.||-++..
T Consensus 75 iD~Vih~Ag~ 84 (324)
T TIGR03589 75 VDYVVHAAAL 84 (324)
T ss_pred CCEEEECccc
Confidence 8999988763
No 218
>PRK09072 short chain dehydrogenase; Provisional
Probab=57.80 E-value=40 Score=36.10 Aligned_cols=80 Identities=21% Similarity=0.160 Sum_probs=53.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..++++|.+ .|..|++++++++..+....+.. .+.++.++.+|.++++.++++-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~------~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAA------AGARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHH------CCCEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35688998754 57778888864 25678888888877665543321 1346788899999988766531
Q ss_pred --cccccEEEEecCC
Q 002491 458 --VSKARAIIVLASD 470 (916)
Q Consensus 458 --i~~A~aVIiltdd 470 (916)
....+.+|.++.-
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 2356777776643
No 219
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=57.73 E-value=1.1e+02 Score=34.99 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=68.4
Q ss_pred cccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH-----hh-hcccCCccEEEEEECCCCHHHH
Q 002491 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA-----KL-EFDFMGTSVICRSGSPLILADL 453 (916)
Q Consensus 380 ~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~-----~~-~~~~~~~~V~~i~GD~t~~e~L 453 (916)
+....++|+|.|+ +--++||...- +-..++++|-||+-+|-... +. ...+.+.++.++.-|+.+- |
T Consensus 288 ~~a~~vLvlGGGD--GLAlRellkyP----~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w--l 359 (508)
T COG4262 288 RGARSVLVLGGGD--GLALRELLKYP----QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW--L 359 (508)
T ss_pred cccceEEEEcCCc--hHHHHHHHhCC----CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH--H
Confidence 4567999999998 55577877543 23578899999976554321 11 2345677888888776643 4
Q ss_pred hccCcccccEEEEecCCCC-CChhhHHHH-HHHHHHhhhcCCCCceEEEEecCC
Q 002491 454 KKVSVSKARAIIVLASDEN-ADQSDARAL-RVVLSLTGVKEGLRGHVVVEMSDL 505 (916)
Q Consensus 454 ~rAgi~~A~aVIiltdd~~-~~~sD~~Ni-~~~Lsar~l~p~~~~~IIArv~d~ 505 (916)
+.+ .+.-|.+|+--.|.+ +.-.---.. .-.+..+.+++ ....|++..++
T Consensus 360 r~a-~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e--~Gl~VvQags~ 410 (508)
T COG4262 360 RTA-ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE--TGLMVVQAGSP 410 (508)
T ss_pred Hhh-cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc--CceEEEecCCC
Confidence 444 458899999887731 110000011 22344455555 34566665554
No 220
>PRK06194 hypothetical protein; Provisional
Probab=57.64 E-value=65 Score=34.89 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+ ..|..+++.|.+. |..|++++..+. ..+.+.+. + .-.+..+.++.+|.+|.+.++++-
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~---~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL---GMKLVLADVQQD--ALDRAVAE-L---RAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC---CCEEEEEeCChH--HHHHHHHH-H---HhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 3579999985 5699999999764 888888875432 22222110 0 001345777899999998887641
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.++-.+..
T Consensus 77 ~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1246888888865
No 221
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.56 E-value=22 Score=42.17 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=45.1
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChH---HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~---er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 717 (916)
..++++|+|+|..|..+++.|.+. |..|++++..+.+ .+.+.+.+. + +.+..|+...
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~---G~~V~~~d~~~~~~~~~~~~~l~~~--------g--v~~~~~~~~~------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL---GARVTVVDDGDDERHRALAAILEAL--------G--ATVRLGPGPT------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCchhhhHHHHHHHHHc--------C--CEEEECCCcc-------
Confidence 356899999999999999888754 8889999854321 122334332 2 3344565332
Q ss_pred CCCCccEEEEecC
Q 002491 718 PLETFDSILILAD 730 (916)
Q Consensus 718 ~I~~adavIilad 730 (916)
....+|.||+.++
T Consensus 75 ~~~~~D~Vv~s~G 87 (480)
T PRK01438 75 LPEDTDLVVTSPG 87 (480)
T ss_pred ccCCCCEEEECCC
Confidence 2356888887665
No 222
>PRK07478 short chain dehydrogenase; Provisional
Probab=57.35 E-value=42 Score=35.68 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=51.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|... |..|+++.++++..+...++.. ..+.++.++.+|.++++.++++-
T Consensus 7 k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQAELDQLVAEIR--AEGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4788888765 577788888752 4678888888776665544321 12335778888888888766531
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
..+-|.+|..+.
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 124566665553
No 223
>PRK07774 short chain dehydrogenase; Provisional
Probab=57.23 E-value=43 Score=35.32 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=50.9
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+ ..+..++++|... +..|++++++++..+...+.... .+..+.++.+|.++.+.++++-
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALARE------GASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3579999984 4677888888753 46788888876555444332111 1224667888999888765421
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.||-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 124677776664
No 224
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.22 E-value=44 Score=35.16 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=50.3
Q ss_pred cceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 382 ~~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
...++|.|. |..+..+++.|.+. +..|++++++++.++...++.. ..+.++.++.+|.++++.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQEKLEEAVAECG--ALGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 357899998 55677778887652 4678888888766655443321 1234577788888887765432
Q ss_pred --CcccccEEEEecC
Q 002491 457 --SVSKARAIIVLAS 469 (916)
Q Consensus 457 --gi~~A~aVIiltd 469 (916)
.....|.||-++.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1124566666553
No 225
>PRK05884 short chain dehydrogenase; Provisional
Probab=57.03 E-value=31 Score=36.27 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=47.5
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---c
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---S 459 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi---~ 459 (916)
+++|.|.+. .+..++++|.. .+..|+++++++++++...++ .++.++.+|.++++.++++-- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~------~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRN------DGHKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhh
Confidence 588998854 57778888864 257888888888776654332 135577889999888776411 1
Q ss_pred cccEEEEec
Q 002491 460 KARAIIVLA 468 (916)
Q Consensus 460 ~A~aVIilt 468 (916)
+.|.+|-+.
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 345555543
No 226
>PRK07326 short chain dehydrogenase; Provisional
Probab=57.01 E-value=51 Score=34.41 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=52.2
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcC-CceEEEEEcCcCCHhHHhcCC-
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLM-NIKLVHREGNAVIRRHLESLP- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~-~~~v~~i~GD~t~~~~L~~a~- 718 (916)
.+.++|.|. |..|..+++.|.+. |..|+++...+ ++.+.+.+ .+. ...+.++.+|.++++.++++-
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~---g~~V~~~~r~~--~~~~~~~~------~l~~~~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE---GYKVAITARDQ--KELEEAAA------ELNNKGNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEeeCCH--HHHHHHHH------HHhccCcEEEEEccCCCHHHHHHHHH
Confidence 467999997 56699999999753 77888887644 23332222 011 023677899999998775421
Q ss_pred -----CCCccEEEEecCC
Q 002491 719 -----LETFDSILILADE 731 (916)
Q Consensus 719 -----I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 75 ~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2368888877653
No 227
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=56.98 E-value=27 Score=40.29 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
..+++|+|.|..|..+++.+... |..|++++..+ ++.+.+... +.. . +..+..+.+.|.++ +.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~~--~~~~~l~~~------~g~-~---v~~~~~~~~~l~~~-l~~ 230 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL---GATVTILDINI--DRLRQLDAE------FGG-R---IHTRYSNAYEIEDA-VKR 230 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECCH--HHHHHHHHh------cCc-e---eEeccCCHHHHHHH-Hcc
Confidence 45699999999999999999865 67788888643 555555331 111 1 22344556667665 678
Q ss_pred ccEEEEec
Q 002491 722 FDSILILA 729 (916)
Q Consensus 722 adavIila 729 (916)
||.+|..+
T Consensus 231 aDvVI~a~ 238 (370)
T TIGR00518 231 ADLLIGAV 238 (370)
T ss_pred CCEEEEcc
Confidence 99888765
No 228
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=56.84 E-value=60 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=27.2
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d 420 (916)
.+-||+|+|.|..+.++++.|....- ..++++|.|
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECC
Confidence 35799999999999999999987542 456666655
No 229
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=56.52 E-value=16 Score=36.67 Aligned_cols=78 Identities=24% Similarity=0.208 Sum_probs=45.4
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCcc
Q 002491 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFD 723 (916)
Q Consensus 644 hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ad 723 (916)
+|.|||.|.-|..++..|... |.+|++.... ++..+.+.+.+..+..+++..+. .+..-..+|+++ ++.||
T Consensus 1 KI~ViGaG~~G~AlA~~la~~---g~~V~l~~~~--~~~~~~i~~~~~n~~~~~~~~l~---~~i~~t~dl~~a-~~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN---GHEVTLWGRD--EEQIEEINETRQNPKYLPGIKLP---ENIKATTDLEEA-LEDAD 71 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC---TEEEEEETSC--HHHHHHHHHHTSETTTSTTSBEE---TTEEEESSHHHH-HTT-S
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCEEEEEecc--HHHHHHHHHhCCCCCCCCCcccC---cccccccCHHHH-hCccc
Confidence 588999999999999999864 7889999864 35555555543222223433221 111111233332 56788
Q ss_pred EEEEecC
Q 002491 724 SILILAD 730 (916)
Q Consensus 724 avIilad 730 (916)
.||+...
T Consensus 72 ~IiiavP 78 (157)
T PF01210_consen 72 IIIIAVP 78 (157)
T ss_dssp EEEE-S-
T ss_pred EEEeccc
Confidence 7777653
No 230
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=56.38 E-value=23 Score=34.83 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=54.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|.+. .|..+++.|.+. -+..++++...++.++.+.+.+. + +-++..+.+++.|.++++.++++-
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~-l---~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQE-L---KAPGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHH-H---HHTTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeeccccccccccccc-c---ccccccccccccccccccccccccccc
Confidence 4789999865 499999999875 13456666654234555544220 0 012456888999999998776532
Q ss_pred ---CCCccEEEEecCCC
Q 002491 719 ---LETFDSILILADES 732 (916)
Q Consensus 719 ---I~~adavIilad~~ 732 (916)
-...|.+|-.++-.
T Consensus 75 ~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccc
Confidence 34778888777643
No 231
>PRK09291 short chain dehydrogenase; Provisional
Probab=56.34 E-value=84 Score=33.25 Aligned_cols=80 Identities=13% Similarity=-0.002 Sum_probs=52.9
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
++++|.|.+ ..|..+++.|.+. |..++++...+. ..+.+.+.. .-.+..+.++.+|.++++.++++--..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~---G~~v~~~~r~~~--~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK---GHNVIAGVQIAP--QVTALRAEA----ARRGLALRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHHH----HhcCCcceEEEeeCCCHHHHHHHhcCC
Confidence 579999985 5699999999764 778888765432 222222100 001223667899999999988764447
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
.|.+|-.+..
T Consensus 74 id~vi~~ag~ 83 (257)
T PRK09291 74 VDVLLNNAGI 83 (257)
T ss_pred CCEEEECCCc
Confidence 8988887653
No 232
>PRK06180 short chain dehydrogenase; Provisional
Probab=56.20 E-value=39 Score=36.63 Aligned_cols=62 Identities=18% Similarity=0.009 Sum_probs=43.3
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
+.++|.|.+. .+..++++|.. .|..|++++++++..+..... .+.++.++.+|.++++.+.+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~------~G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~ 67 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALA------AGHRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDA 67 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHh------CcCEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHH
Confidence 4689999865 56778888864 257788899888766544321 12357778889888887755
No 233
>PRK04457 spermidine synthase; Provisional
Probab=56.06 E-value=1.4e+02 Score=32.73 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=50.8
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.+|+++|.|. +.+...+.... .+..|+.+|.|++.++...+.+.......++.++.||+.+. +... -+..|
T Consensus 68 ~~vL~IG~G~--G~l~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~--l~~~-~~~yD 138 (262)
T PRK04457 68 QHILQIGLGG--GSLAKFIYTYL----PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY--IAVH-RHSTD 138 (262)
T ss_pred CEEEEECCCH--hHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--HHhC-CCCCC
Confidence 5799999994 66776665432 23578999999987775543322211235788999997643 3332 25688
Q ss_pred EEEEecC
Q 002491 463 AIIVLAS 469 (916)
Q Consensus 463 aVIiltd 469 (916)
.|++-..
T Consensus 139 ~I~~D~~ 145 (262)
T PRK04457 139 VILVDGF 145 (262)
T ss_pred EEEEeCC
Confidence 8888653
No 234
>PLN02583 cinnamoyl-CoA reductase
Probab=55.97 E-value=39 Score=37.28 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=50.2
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHH-HHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKERE-KKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~-~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
.++++|.|. |..|..+++.|.+. |.+|+++...+..+.. +.+.+ +. . .+..+.++.+|.+|.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~---G~~V~~~~R~~~~~~~~~~~~~--l~--~-~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR---GYTVHAAVQKNGETEIEKEIRG--LS--C-EEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC---CCEEEEEEcCchhhhHHHHHHh--cc--c-CCCceEEEEecCCCHHHHHHH-H
Confidence 458999998 56799999999764 7888877643222111 11211 00 0 112366789999999888765 4
Q ss_pred CCccEEEEec
Q 002491 720 ETFDSILILA 729 (916)
Q Consensus 720 ~~adavIila 729 (916)
..+|.++-+.
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 5678777543
No 235
>PRK06179 short chain dehydrogenase; Provisional
Probab=55.96 E-value=22 Score=38.22 Aligned_cols=71 Identities=15% Similarity=0.020 Sum_probs=48.2
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.. .|..|+++.++++..+. ..++.++.+|.+|++.++++=
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~------~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLAR------AGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHH------CCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHH
Confidence 4789999765 57778888864 25678888887654321 135778899999998877641
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....|.+|..+.
T Consensus 69 ~~~g~~d~li~~ag 82 (270)
T PRK06179 69 ARAGRIDVLVNNAG 82 (270)
T ss_pred HhCCCCCEEEECCC
Confidence 123567766664
No 236
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=55.95 E-value=45 Score=35.31 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=50.5
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc------
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA------ 456 (916)
.++|.|.+. .+..++++|.+. +..|++++++++..+...+... ..+.++.++.+|.++++.+.++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKD------GFAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 588999754 577788888753 4678888877665554433221 1244677888999998887664
Q ss_pred CcccccEEEEecC
Q 002491 457 SVSKARAIIVLAS 469 (916)
Q Consensus 457 gi~~A~aVIiltd 469 (916)
.....+.+|-.+.
T Consensus 74 ~~~~id~vi~~ag 86 (254)
T TIGR02415 74 KFGGFDVMVNNAG 86 (254)
T ss_pred HcCCCCEEEECCC
Confidence 1224577766653
No 237
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=55.95 E-value=1e+02 Score=36.09 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=51.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
.+++|.|.+. .|..++++|... |..|++++++++..+..... ...++.++.+|.++++.+.+. +.+.
T Consensus 179 K~VLITGASgGIG~aLA~~La~~------G~~Vi~l~r~~~~l~~~~~~-----~~~~v~~v~~Dvsd~~~v~~~-l~~I 246 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELHQQ------GAKVVALTSNSDKITLEING-----EDLPVKTLHWQVGQEAALAEL-LEKV 246 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhh-----cCCCeEEEEeeCCCHHHHHHH-hCCC
Confidence 4789999865 577788888652 56788888776655433221 122466788999999987654 4578
Q ss_pred cEEEEecC
Q 002491 462 RAIIVLAS 469 (916)
Q Consensus 462 ~aVIiltd 469 (916)
|.+|..+.
T Consensus 247 DiLInnAG 254 (406)
T PRK07424 247 DILIINHG 254 (406)
T ss_pred CEEEECCC
Confidence 88887654
No 238
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=55.92 E-value=32 Score=33.87 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=47.0
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcc--cCCccEEEEEECCCCHHHHhccCcc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVS 459 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~--~~~~~V~~i~GD~t~~e~L~rAgi~ 459 (916)
++|.|+|. |..+..++-.|.... -...++|+|.+++..+....++.+- +...++ ..+. .+.++ +.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~----l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~-~~~~~-----~~ 68 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG----LADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITS-GDYEA-----LK 68 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT----TSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEE-SSGGG-----GT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC----CCCceEEeccCcccceeeehhhhhhhhhccccc--cccc-ccccc-----cc
Confidence 57999999 998888888776532 3467999999876554443332111 122222 2222 34444 45
Q ss_pred cccEEEEecCC
Q 002491 460 KARAIIVLASD 470 (916)
Q Consensus 460 ~A~aVIiltdd 470 (916)
+||.||++.+.
T Consensus 69 ~aDivvitag~ 79 (141)
T PF00056_consen 69 DADIVVITAGV 79 (141)
T ss_dssp TESEEEETTST
T ss_pred cccEEEEeccc
Confidence 78888888866
No 239
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=55.92 E-value=31 Score=40.87 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=43.3
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..-|+++|.|+ |.-...-+. +....+....|..+|+++..+..+.......-.+..|.+++||..+.+.-+ +|
T Consensus 187 ~~vVldVGAGr-GpL~~~al~-A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-----kv 259 (448)
T PF05185_consen 187 DKVVLDVGAGR-GPLSMFALQ-AGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-----KV 259 (448)
T ss_dssp T-EEEEES-TT-SHHHHHHHH-TTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS------E
T ss_pred ceEEEEeCCCc-cHHHHHHHH-HHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-----ce
Confidence 34678899997 333322222 221122457889999998655433222122234567999999987766544 77
Q ss_pred cEEEE
Q 002491 462 RAIIV 466 (916)
Q Consensus 462 ~aVIi 466 (916)
|.||.
T Consensus 260 DIIVS 264 (448)
T PF05185_consen 260 DIIVS 264 (448)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77776
No 240
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=55.53 E-value=1.1e+02 Score=35.76 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002491 159 TYYMLIINCILCVCYAIHLRDRVEKLEEE 187 (916)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (916)
...+++.-+++++..+.++..++.++..+
T Consensus 207 ~~~~~~~~i~f~~~~l~~~~~ei~~i~~~ 235 (425)
T PF08016_consen 207 DYFVLLCEILFVLFVLYFLYREIKKIRRE 235 (425)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555666777777777655
No 241
>PRK07904 short chain dehydrogenase; Provisional
Probab=55.47 E-value=40 Score=36.23 Aligned_cols=81 Identities=20% Similarity=0.110 Sum_probs=49.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHH-HHHHHHhhhcccCCccEEEEEECCCCHHHHhcc---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~-ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--- 456 (916)
.++++|+|.+. .+..++++|... ++..|+++.++++. ++...++... ..+.++.++.+|.++++..+++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~-----gg~~V~~~~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKN-----APARVVLAALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-----CCCeEEEEeCCcchhHHHHHHHHHh-cCCCceEEEEecCCChHHHHHHHHH
Confidence 45799999876 467788888652 23677788877654 5544333211 1123678889999888764432
Q ss_pred --CcccccEEEEec
Q 002491 457 --SVSKARAIIVLA 468 (916)
Q Consensus 457 --gi~~A~aVIilt 468 (916)
.-.+.|.+|...
T Consensus 82 ~~~~g~id~li~~a 95 (253)
T PRK07904 82 AFAGGDVDVAIVAF 95 (253)
T ss_pred HHhcCCCCEEEEee
Confidence 012566666544
No 242
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=55.44 E-value=30 Score=41.84 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHH-hhhhh-------hcC--CCHHHHHHHHHhhhhccCCC--CCc-CCccCceeeeeehhhh-HHHH
Q 002491 289 LALLFATIFLIIFGG-LALYA-------VSD--SSFAEALWLSWTFVADSGNH--ADR-VGTGPRIVSVSISSGG-MLIF 354 (916)
Q Consensus 289 l~ll~~~l~li~~g~-l~~~~-------ie~--~s~~dA~y~~~~titTvGyg--d~~-~t~~gRi~~v~lil~G-i~if 354 (916)
..++++..+++++++ +.+.. .|+ .+|.+.+|-+...+.|+|.. ..+ .+..+++...+.|++| ++.+
T Consensus 417 ~~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpi 496 (559)
T PRK05482 417 ALAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPI 496 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555 33323 232 58999999999999999864 233 5778898887777776 4444
Q ss_pred HHHHHH
Q 002491 355 AMMLGL 360 (916)
Q Consensus 355 a~~ig~ 360 (916)
...+.+
T Consensus 497 t~~lAl 502 (559)
T PRK05482 497 IPVLAI 502 (559)
T ss_pred HHHHHH
Confidence 444443
No 243
>PRK07814 short chain dehydrogenase; Provisional
Probab=55.22 E-value=48 Score=35.58 Aligned_cols=80 Identities=9% Similarity=0.100 Sum_probs=51.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.+.++|.|.+. .+..+++.|.. .|..|++++++++..+...+... ..+.++.++.+|.++++.+.++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~------~G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAE------AGADVLIAARTESQLDEVAEQIR--AAGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 35688888775 56777787764 24678888888766655443321 12345778889999988876531
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
..+.+.+|-++.
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 135566666553
No 244
>PRK09135 pteridine reductase; Provisional
Probab=55.08 E-value=53 Score=34.45 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=49.7
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc-
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d-~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi- 458 (916)
..+++|.|.+. .+..++++|... +..|+++++. ++..+...... .+.....+.++.+|.++++.+.++--
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA------GYRVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 36899999865 477788888752 4677777764 33333222111 01112357788999999888775421
Q ss_pred -----ccccEEEEecC
Q 002491 459 -----SKARAIIVLAS 469 (916)
Q Consensus 459 -----~~A~aVIiltd 469 (916)
...|.||-++.
T Consensus 79 ~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 79 CVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24677777664
No 245
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=54.92 E-value=24 Score=38.39 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=49.2
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-----
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL----- 717 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a----- 717 (916)
+|+|.|. |..|..++++|.+. |.+|.++...+.. .. ..+ +..+.||.+|.+.|.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~---g~~V~~~~R~~~~--~~-----------~~~--~~~~~~d~~d~~~l~~a~~~~~ 62 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA---SVPFLVASRSSSS--SA-----------GPN--EKHVKFDWLDEDTWDNPFSSDD 62 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC---CCcEEEEeCCCcc--cc-----------CCC--CccccccCCCHHHHHHHHhccc
Confidence 4788998 78899999999764 7788888765421 10 122 34568999999999874
Q ss_pred CCCC-ccEEEEecC
Q 002491 718 PLET-FDSILILAD 730 (916)
Q Consensus 718 ~I~~-adavIilad 730 (916)
.+.. +|.++.++.
T Consensus 63 ~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 63 GMEPEISAVYLVAP 76 (285)
T ss_pred CcCCceeEEEEeCC
Confidence 2355 888887764
No 246
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.91 E-value=30 Score=36.82 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=53.8
Q ss_pred CCCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002491 641 YPEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 718 (916)
Q Consensus 641 ~~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 718 (916)
+.++++|.|.+ ..|..+++.|.+. |..|+++...+ +..+.+.+. +++.++.++.+|.++++.+.++=
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~---g~~V~~~~r~~--~~~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA---GARVHVCDVSE--AALAATAAR------LPGAKVTATVADVADPAQVERVFD 78 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH------HhcCceEEEEccCCCHHHHHHHHH
Confidence 34789999985 4599999999764 78888887643 233333221 12224677899999999876521
Q ss_pred -----CCCccEEEEecCC
Q 002491 719 -----LETFDSILILADE 731 (916)
Q Consensus 719 -----I~~adavIilad~ 731 (916)
....|.||-.+..
T Consensus 79 ~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 79 TAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2468999887754
No 247
>PRK07454 short chain dehydrogenase; Provisional
Probab=54.85 E-value=82 Score=33.08 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=51.4
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|. |..|..+++.|.+. |..|++++..+. ..+.+.+. + .. .+..+.++.+|.++++.+.++-
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKA---GWDLALVARSQD--ALEALAAE-L--RS-TGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHH-H--Hh-CCCcEEEEEccCCCHHHHHHHHHH
Confidence 357999998 55699999999764 778888876432 22222110 0 00 1124677899999998765531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 77 ~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 77 LLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2357888877653
No 248
>PRK05876 short chain dehydrogenase; Provisional
Probab=54.73 E-value=49 Score=36.04 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=50.3
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|... |..|++++.+++.++...+++. ..+.++.++..|.++++.++++-
T Consensus 7 k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~~~~l~~~~~~l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARR------GARVVLGDVDKPGLRQAVNHLR--AEGFDVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688888765 577788888652 4678888888776665543321 11335777888988888776541
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
..+-+.+|-.+.
T Consensus 79 ~~~g~id~li~nAg 92 (275)
T PRK05876 79 RLLGHVDVVFSNAG 92 (275)
T ss_pred HHcCCCCEEEECCC
Confidence 123466665543
No 249
>PRK08264 short chain dehydrogenase; Validated
Probab=54.73 E-value=45 Score=34.94 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=50.8
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCc-eEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~-iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-- 457 (916)
..+++|.|.+ ..+..++++|... +. .|+++.++++..+. .+.++.++.+|.++.+.++++-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~------G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR------GAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh
Confidence 4578999974 4577788888642 44 78888887755432 1346889999999998876542
Q ss_pred cccccEEEEecCC
Q 002491 458 VSKARAIIVLASD 470 (916)
Q Consensus 458 i~~A~aVIiltdd 470 (916)
....|.||-...-
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2346777776643
No 250
>COG2985 Predicted permease [General function prediction only]
Probab=54.70 E-value=14 Score=43.52 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=43.6
Q ss_pred CCCcCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 002491 561 WPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (916)
Q Consensus 561 ~p~l~G~tf~el~~~~-~~~ivIGI~r~~~~g~~~lnP~~d~vI~~GD~LiVIg~~~~~~~~ 621 (916)
.|+++|+.++|+-... .++.+=-++| ++...+|++|++++.||++.++|.+++..+.
T Consensus 211 ~p~~~g~~l~d~p~l~~~~v~~sRikr----d~~~~~p~~~~~i~~Gd~l~lVG~~~~l~r~ 268 (544)
T COG2985 211 NPNLDGLNLRDLPILRQEGVYCSRIKR----DGILAVPDPDTIIQVGDELHLVGYPDALARL 268 (544)
T ss_pred CCCccccchhhcccccCCceEEEEEec----CCeeecCCCCcccccCcEEEecCChHHHHHH
Confidence 4779999999987643 3344434443 4578899999999999999999999876544
No 251
>PLN02583 cinnamoyl-CoA reductase
Probab=54.36 E-value=57 Score=35.97 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=49.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d--~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
+.+++|.|.+. .+..++++|... |+.|+++.++ +......+.... ..+.++.++.||.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~------G~~V~~~~R~~~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR------GYTVHAAVQKNGETEIEKEIRGLS--CEEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEEcCchhhhHHHHHHhcc--cCCCceEEEEecCCCHHHHHHH-H
Confidence 45899999765 577788888753 4677766553 222222222110 0123578899999999988765 4
Q ss_pred ccccEEEEec
Q 002491 459 SKARAIIVLA 468 (916)
Q Consensus 459 ~~A~aVIilt 468 (916)
..+++|+-+.
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 4677877543
No 252
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=54.23 E-value=51 Score=35.04 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=42.7
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
..++|.|.+. .+..++++|... |..|++++++++..+....+... .+.++.++.+|.++++.+++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~------G~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~ 75 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEY------GAEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEA 75 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHH
Confidence 4688888765 577788888752 57888999887666554433211 12346667778777776654
No 253
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=54.18 E-value=28 Score=31.66 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002491 159 TYYMLIINCILCVCYAIHLRDRVEKLEEENSSL 191 (916)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (916)
.++++.+.+.+++++..|++.|+.+++.++..|
T Consensus 3 ~l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL 35 (87)
T PF10883_consen 3 NLQIVGGVGAVVALILAYLWWKVKKAKKQNAKL 35 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555565666667777777777776655
No 254
>PRK05717 oxidoreductase; Validated
Probab=54.14 E-value=56 Score=34.79 Aligned_cols=77 Identities=19% Similarity=0.097 Sum_probs=49.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc--C-
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--g- 457 (916)
.+.++|.|.+. .+..++++|.+. +..|++++.+++..+...+.. +.++.++.+|.++.+.++++ .
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE------GWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 35688898754 577788888753 467888887765544433221 33577889999998876543 1
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
..+.|.+|-++.
T Consensus 79 ~~~~g~id~li~~ag 93 (255)
T PRK05717 79 LGQFGRLDALVCNAA 93 (255)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577776654
No 255
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=54.12 E-value=39 Score=37.51 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=53.6
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhccc----CCccEEEEEECCCCHHHHhccCc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF----MGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~----~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
.||+|+|.|+ +..++++..... -..++++|-|++.++-..+-+ ... ...++..+.+|+.. -+++..-
T Consensus 78 k~VLiiGgGd--G~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~~l-~~~~~~~~dpRv~i~i~Dg~~--~v~~~~~ 148 (282)
T COG0421 78 KRVLIIGGGD--GGTLREVLKHLP----VERITMVEIDPAVIELARKYL-PEPSGGADDPRVEIIIDDGVE--FLRDCEE 148 (282)
T ss_pred CeEEEECCCc--cHHHHHHHhcCC----cceEEEEEcCHHHHHHHHHhc-cCcccccCCCceEEEeccHHH--HHHhCCC
Confidence 4999999997 666777765332 368899999998776543322 111 14678888888754 3554443
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
+.|.||+.+.|
T Consensus 149 -~fDvIi~D~td 159 (282)
T COG0421 149 -KFDVIIVDSTD 159 (282)
T ss_pred -cCCEEEEcCCC
Confidence 89999998877
No 256
>PRK07825 short chain dehydrogenase; Provisional
Probab=53.96 E-value=42 Score=36.16 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=49.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|... |..|++.+++++.++...... .++.++.+|.++++.+.++-
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHH
Confidence 4789999865 567778888642 567888888887766543321 13667888999888764421
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....+.+|....
T Consensus 74 ~~~~~id~li~~ag 87 (273)
T PRK07825 74 ADLGPIDVLVNNAG 87 (273)
T ss_pred HHcCCCCEEEECCC
Confidence 124466665543
No 257
>PLN02427 UDP-apiose/xylose synthase
Probab=53.89 E-value=50 Score=37.85 Aligned_cols=82 Identities=17% Similarity=0.071 Sum_probs=55.1
Q ss_pred CCCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
...+|+|.|. |-.|..+++.|.+. .|.+|+.++..+ ++...+.+.+. ..+. ..+.++.||.+|.+.|+++ +
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~r~~--~~~~~l~~~~~--~~~~-~~~~~~~~Dl~d~~~l~~~-~ 84 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALDVYN--DKIKHLLEPDT--VPWS-GRIQFHRINIKHDSRLEGL-I 84 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEecCc--hhhhhhhcccc--ccCC-CCeEEEEcCCCChHHHHHH-h
Confidence 4467999998 77899999999763 247788887533 23333322110 0011 2377899999999988875 4
Q ss_pred CCccEEEEecC
Q 002491 720 ETFDSILILAD 730 (916)
Q Consensus 720 ~~adavIilad 730 (916)
..+|.||=++.
T Consensus 85 ~~~d~ViHlAa 95 (386)
T PLN02427 85 KMADLTINLAA 95 (386)
T ss_pred hcCCEEEEccc
Confidence 56899998875
No 258
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=53.67 E-value=28 Score=43.21 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=51.0
Q ss_pred cccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc
Q 002491 380 IEKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 380 ~~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
...++|+|.|.+- .|..++++|... +++.|+.+++++....... ...++.++.||.++.+.+.+.-+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~-----~g~~V~~l~r~~~~~~~~~-------~~~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRD-----DNYEVYGLDIGSDAISRFL-------GHPRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhC-----CCcEEEEEeCCchhhhhhc-------CCCceEEEeccccCcHHHHHHHh
Confidence 4567899999754 577788888752 2478888887654322211 12357889999998665433234
Q ss_pred ccccEEEEecC
Q 002491 459 SKARAIIVLAS 469 (916)
Q Consensus 459 ~~A~aVIiltd 469 (916)
+++|.||=++.
T Consensus 381 ~~~D~ViHlAa 391 (660)
T PRK08125 381 KKCDVVLPLVA 391 (660)
T ss_pred cCCCEEEECcc
Confidence 57898886553
No 259
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=53.55 E-value=55 Score=34.42 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=53.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.+.++|.|.+. .+..++++|.+. +..|++++++.+..+....... ..+.++.++.+|.++++.++++-
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE------GAKVAVFDLNREAAEKVAADIR--AKGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35788998755 577788888752 4678888887765544332211 11345888999999998877641
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....+.+|....
T Consensus 75 ~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVNNAG 89 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677777764
No 260
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=53.53 E-value=49 Score=35.42 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=48.6
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|.+. |..|++++++.+.++..... .+.++.++.+|.++.+.+.++=
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARCV 74 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHHH
Confidence 5778888765 577788888753 57888888887666554321 1335778889988877655431
Q ss_pred --cccccEEEEec
Q 002491 458 --VSKARAIIVLA 468 (916)
Q Consensus 458 --i~~A~aVIilt 468 (916)
..+-|.+|-++
T Consensus 75 ~~~g~id~li~~A 87 (262)
T TIGR03325 75 AAFGKIDCLIPNA 87 (262)
T ss_pred HHhCCCCEEEECC
Confidence 12346666554
No 261
>PRK08589 short chain dehydrogenase; Validated
Probab=53.36 E-value=52 Score=35.62 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=49.7
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|... |..|++++++ +..+...++.. ..+.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~------G~~vi~~~r~-~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE------GAYVLAVDIA-EAVSETVDKIK--SNGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCc-HHHHHHHHHHH--hcCCeEEEEEeecCCHHHHHHHHHHH
Confidence 35789999865 577788888753 5678888887 55554443321 12335778888988887765421
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.+|-.+.
T Consensus 77 ~~~~g~id~li~~Ag 91 (272)
T PRK08589 77 KEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHcCCcCEEEECCC
Confidence 123466665543
No 262
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=53.29 E-value=1e+02 Score=32.18 Aligned_cols=81 Identities=10% Similarity=-0.065 Sum_probs=51.3
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|.+ ..|..+++.|.+. |..++++...+.++..+...... ..+.++.++.+|.++++.++++-
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~---g~~vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLND---GYRVIATYFSGNDCAKDWFEEYG-----FTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCcHHHHHHHHHHhh-----ccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 578888875 4599999999764 77888887543322211111110 11234778899999988765521
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12824 75 EEEEGPVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2357888887754
No 263
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=53.28 E-value=19 Score=36.63 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=38.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChH-HHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e-~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
...|.|+|||..+......|... +..|++..+... ..+.+.+. +. ...+..+| +++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~--------Gf--------~v~~~~eA-v~~ 60 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKAD--------GF--------EVMSVAEA-VKK 60 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHT--------T---------ECCEHHHH-HHC
T ss_pred CCEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHC--------CC--------eeccHHHH-Hhh
Confidence 45789999999988888888753 567777665443 34433221 12 12244454 778
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
||.|+++++|
T Consensus 61 aDvV~~L~PD 70 (165)
T PF07991_consen 61 ADVVMLLLPD 70 (165)
T ss_dssp -SEEEE-S-H
T ss_pred CCEEEEeCCh
Confidence 9999999975
No 264
>PRK07775 short chain dehydrogenase; Provisional
Probab=53.23 E-value=51 Score=35.67 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=52.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
+.+++|.|.+. .+..++++|... |..|+++.++++..+....+.. ..+.++.++.+|.++++.+.++=
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~------G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA------GFPVALGARRVEKCEELVDKIR--ADGGEAVAFPLDVTDPDSVKSFVAQA 81 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45899999754 577888888752 4677777776655444332211 11335778899999999886531
Q ss_pred ---cccccEEEEecCC
Q 002491 458 ---VSKARAIIVLASD 470 (916)
Q Consensus 458 ---i~~A~aVIiltdd 470 (916)
....+.+|-++..
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 82 EEALGEIEVLVSGAGD 97 (274)
T ss_pred HHhcCCCCEEEECCCc
Confidence 2346777776643
No 265
>PRK06196 oxidoreductase; Provisional
Probab=53.20 E-value=39 Score=37.57 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=50.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+. .+..++++|... |..|+++.++++..+...++. .++.++.+|.++.+.++++-
T Consensus 27 k~vlITGasggIG~~~a~~L~~~------G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQA------GAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHH
Confidence 4788999865 577788888753 567888888877665544322 13667888888888776532
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
..+.|.+|..+.
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 134566666553
No 266
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=53.15 E-value=34 Score=37.36 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=48.5
Q ss_pred eEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcc-
Q 002491 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS- 459 (916)
Q Consensus 384 HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~--e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~- 459 (916)
+|+|.|.+ -.+..++++|...+ ....|++++... ...+. +.... ...++.++.||.++++.+.++ ++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~----~~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH----PDAEVIVLDKLTYAGNLEN-LADLE---DNPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC----CCCEEEEecCCCcchhhhh-hhhhc---cCCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 47899974 56888888887542 124666666421 11111 11110 123577899999999998776 33
Q ss_pred -cccEEEEecCC
Q 002491 460 -KARAIIVLASD 470 (916)
Q Consensus 460 -~A~aVIiltdd 470 (916)
++|.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 38998888753
No 267
>PRK07024 short chain dehydrogenase; Provisional
Probab=53.03 E-value=40 Score=36.00 Aligned_cols=79 Identities=10% Similarity=0.018 Sum_probs=51.7
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|.+ ..|..+++.|.+. |..|++++..+ ++.+.+.+. + .-.+ ++.++.+|.++++.++++-
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~-~---~~~~-~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ---GATLGLVARRT--DALQAFAAR-L---PKAA-RVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHh-c---ccCC-eeEEEEcCCCCHHHHHHHHHHH
Confidence 579999975 4599999999764 78899888643 333333221 1 0011 5778999999988775531
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-.++.
T Consensus 73 ~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 73 IAAHGLPDVVIANAGI 88 (257)
T ss_pred HHhCCCCCEEEECCCc
Confidence 2346888877653
No 268
>PRK05599 hypothetical protein; Provisional
Probab=53.02 E-value=45 Score=35.51 Aligned_cols=64 Identities=31% Similarity=0.209 Sum_probs=40.2
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
.++|.|.+. .+..++++|.+ +..|+++.++++.++...+++.. .....+.++..|.+|++.+++
T Consensus 2 ~vlItGas~GIG~aia~~l~~-------g~~Vil~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~~ 66 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-------GEDVVLAARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHRE 66 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHHH
Confidence 578999876 56777777752 36788888887776655443211 111235666777777766554
No 269
>PRK12828 short chain dehydrogenase; Provisional
Probab=53.00 E-value=46 Score=34.62 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=49.0
Q ss_pred ceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC----
Q 002491 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (916)
Q Consensus 383 ~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg---- 457 (916)
..++|.|.+ ..+..++++|.+. +..|++++++++..++...+. ....+.++.+|..+.+.++++-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAAPLSQTLPGV----PADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChHhHHHHHHHH----hhcCceEEEeecCCHHHHHHHHHHHH
Confidence 468888874 4577788888652 467889988776554443322 1234567778998888776532
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....+.||-.+.
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 124677766553
No 270
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.77 E-value=1.4e+02 Score=31.47 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=53.1
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.+ ..|..+++.|.+. |..++++...++ ..+...+. + . .+..+.++++|.++++.++++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~---G~~v~~~~r~~~--~~~~~~~~-~---~-~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE---GARVVVADRDAE--AAERVAAA-I---A-AGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC---CCeEEEecCCHH--HHHHHHHH-H---h-cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3589999985 5599999999864 778888875432 22222210 0 0 123467889999999887653
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 75 i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 75 VAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12467888887764
No 271
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=52.74 E-value=79 Score=33.04 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=52.6
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
..+++|.|.+. .+..++++|.+. +..|++..++++.++...... +.++.++.+|.++.+.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ------GAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45889998755 577788888652 457777877776666543321 33577888999999888764
Q ss_pred --CcccccEEEEecCC
Q 002491 457 --SVSKARAIIVLASD 470 (916)
Q Consensus 457 --gi~~A~aVIiltdd 470 (916)
...+.|.+|-++..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 75 EADLEGVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 12356777776643
No 272
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=52.52 E-value=22 Score=39.17 Aligned_cols=69 Identities=22% Similarity=0.124 Sum_probs=47.5
Q ss_pred cccccHHHHHHHHHHhcCCC--CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccEEE
Q 002491 649 GWRRDIDDMIMVLEAFLAPG--SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSIL 726 (916)
Q Consensus 649 Gwg~~~~~li~~L~~~~~~g--~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~adavI 726 (916)
|.|-.|..++++|.+. | ..|.+++..+.......+. .++. ..+++||.+|++.|+++ ++.+|.|+
T Consensus 5 gsGflG~~iv~~Ll~~---g~~~~Vr~~d~~~~~~~~~~~~-------~~~~--~~~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---GYIYEVRVLDRSPPPKFLKDLQ-------KSGV--KEYIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred CCcHHHHHHHHHHHHC---CCceEEEEcccccccccchhhh-------cccc--eeEEEeccccHHHHHHH-hcCCceEE
Confidence 4466799999999875 5 6788887544322111111 1122 22789999999999997 78899999
Q ss_pred EecC
Q 002491 727 ILAD 730 (916)
Q Consensus 727 ilad 730 (916)
-++.
T Consensus 72 H~Aa 75 (280)
T PF01073_consen 72 HTAA 75 (280)
T ss_pred EeCc
Confidence 8865
No 273
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.43 E-value=1.4e+02 Score=33.42 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=39.8
Q ss_pred ccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 381 ~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
...-++|.|.|. .|..++.||.. .+-.+++.|.+++..++..+.... .| .+.+..-|-++.+.+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~------rg~~~vl~Din~~~~~etv~~~~~--~g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAK------RGAKLVLWDINKQGNEETVKEIRK--IG-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHH------hCCeEEEEeccccchHHHHHHHHh--cC-ceeEEEecCCCHHHHHH
Confidence 356788888887 46677788875 245778888887655544332210 02 35556666666665543
No 274
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=52.32 E-value=54 Score=36.54 Aligned_cols=65 Identities=25% Similarity=0.105 Sum_probs=39.1
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCC-ceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHh
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGG-VIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLK 454 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~-~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~ 454 (916)
+.+++|.|.+. .+..++++|.. .| ..|+++.++.+..+...+++. ..+..+.++..|.++.+.++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~------~G~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~ 69 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAA------TGEWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVR 69 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHH------cCCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHH
Confidence 45889999876 57778888874 25 678888887766554433221 11223445555555555543
No 275
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=52.10 E-value=77 Score=34.81 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=45.1
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccE
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~a 463 (916)
+|.|+|.|..+..++..|... ++.|++.+.+++.++..... +.. .-..++.+ .+++||.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~~~~~~~a~~~--------g~~--~~~~~~~~-----~~~~aDl 60 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRRESTCERAIER--------GLV--DEASTDLS-----LLKDCDL 60 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHC--------CCc--ccccCCHh-----HhcCCCE
Confidence 688999999999999998753 47899999998877665431 110 00111221 2578999
Q ss_pred EEEecCC
Q 002491 464 IIVLASD 470 (916)
Q Consensus 464 VIiltdd 470 (916)
||++++.
T Consensus 61 Vilavp~ 67 (279)
T PRK07417 61 VILALPI 67 (279)
T ss_pred EEEcCCH
Confidence 9999864
No 276
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=52.02 E-value=54 Score=35.43 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=51.4
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..++++|.. .|..|++++++++..+...+++. ..+.++.++.+|.++++.+..+-
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~------~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELAR------AGAKVAILDRNQEKAEAVVAEIK--AAGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35688888754 57778888864 25678888888766555443321 12345778899999888766431
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
..+.|.+|-.+.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 235667766654
No 277
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=51.98 E-value=50 Score=35.27 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=43.5
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
.++|.|.+. .+..++++|.... ...+..|+++.++++.++...+++.....+.++.++.+|.++++.+++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~--~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~ 72 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCL--KSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQ 72 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhh--ccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHH
Confidence 478889876 4677778886421 113577888888877766554432111123356777788888776654
No 278
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=51.92 E-value=53 Score=34.65 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=50.1
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc------
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA------ 456 (916)
.++|.|.+. .+..++++|.+. +..|++++++++..+....... ..+.++.++.+|.++++.+..+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAA------GANVVVNDLGEAGAEAAAKVAT--DAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 588888654 577788888752 4678888888766555433211 1234678899999999865432
Q ss_pred CcccccEEEEecC
Q 002491 457 SVSKARAIIVLAS 469 (916)
Q Consensus 457 gi~~A~aVIiltd 469 (916)
.....+.||-...
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1234567766553
No 279
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=51.90 E-value=42 Score=35.80 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCeEEEEccccc-HHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~~-~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|.+.. |..+++.|.+. |..|++++....++..+.+.+ .+.++.++++|.++++.++++-
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~---G~~vv~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA---GADIVGVGVAEAPETQAQVEA--------LGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEecCchHHHHHHHHHH--------cCCeEEEEEeCCCCHHHHHHHHHH
Confidence 467899998654 89999999864 888888865332222222322 1234677899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 77 ~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 77 AVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2457888776653
No 280
>PRK07035 short chain dehydrogenase; Provisional
Probab=51.90 E-value=60 Score=34.37 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=42.1
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
.+.++|.|.+. .+..++++|.+. |..|++++++++..+...++... .+.++.++..|.++.+.+++
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~ 74 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQ------GAHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDA 74 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHH
Confidence 35688999776 477788888652 46788888887666554433210 12345667777777766543
No 281
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=51.73 E-value=57 Score=36.32 Aligned_cols=66 Identities=23% Similarity=0.121 Sum_probs=41.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
...++|.|.+. .+..++++|... |..|+++.++++..+...+++. ..+.++.++.+|.++.+.+++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~------G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~ 72 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKR------GWHVIMACRNLKKAEAAAQELG--IPPDSYTIIHIDLGDLDSVRR 72 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhh--ccCCceEEEEecCCCHHHHHH
Confidence 35789999765 577788888752 4678888888766655443321 112345666667666665544
No 282
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=51.65 E-value=1.1e+02 Score=37.12 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=73.0
Q ss_pred cceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc-c
Q 002491 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-S 459 (916)
Q Consensus 382 ~~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi-~ 459 (916)
...|+|.|.| ..|.++++|+...+ ...+++.+.|+-....+..++...+...++.++.||..|.+-+.++== .
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~-----p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFN-----PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcC-----CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 3466777765 46889999998754 367788888876544443333222334678899999999999988732 2
Q ss_pred cccEEEEecCC-------CCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCC
Q 002491 460 KARAIIVLASD-------ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD 506 (916)
Q Consensus 460 ~A~aVIiltdd-------~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e 506 (916)
+-|.|+=.+.- .++.+.=..|+.-+..+-+..-..++..++-+..++
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK 378 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK 378 (588)
T ss_pred CCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc
Confidence 46666655432 145555556776555443322111234555555443
No 283
>PLN02253 xanthoxin dehydrogenase
Probab=51.44 E-value=58 Score=35.20 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=51.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
..++|.|.+. .+..++++|.+. |..|++++.+++..+...+... .+.++.++.+|.++++.++++--
T Consensus 19 k~~lItGas~gIG~~la~~l~~~------G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKH------GAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHH
Confidence 4688888765 577788888752 5678888877655554433221 12357889999999888765421
Q ss_pred ---ccccEEEEecC
Q 002491 459 ---SKARAIIVLAS 469 (916)
Q Consensus 459 ---~~A~aVIiltd 469 (916)
.+.|.+|-++.
T Consensus 90 ~~~g~id~li~~Ag 103 (280)
T PLN02253 90 DKFGTLDIMVNNAG 103 (280)
T ss_pred HHhCCCCEEEECCC
Confidence 25677776653
No 284
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=51.44 E-value=1.8e+02 Score=29.16 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=54.9
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.+|-++|.|..+..+++.|... ++.|.+.|++++..+...+. ++.. ..+++++ ++.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~~~~~~~~~--------g~~~----~~s~~e~----~~~~d 59 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPEKAEALAEA--------GAEV----ADSPAEA----AEQAD 59 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHHHHHHHHHT--------TEEE----ESSHHHH----HHHBS
T ss_pred CEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchhhhhhhHHh--------hhhh----hhhhhhH----hhccc
Confidence 5788999999999999999753 58899999999888876542 2211 2234444 44568
Q ss_pred EEEEecCCCCCChhhHHHHHHHHH---HhhhcCCCCceEEEEecCCC
Q 002491 463 AIIVLASDENADQSDARALRVVLS---LTGVKEGLRGHVVVEMSDLD 506 (916)
Q Consensus 463 aVIiltdd~~~~~sD~~Ni~~~Ls---ar~l~p~~~~~IIArv~d~e 506 (916)
.||++..+ |...-.++.. +..+.+ ..+++-..+..
T Consensus 60 vvi~~v~~------~~~v~~v~~~~~i~~~l~~---g~iiid~sT~~ 97 (163)
T PF03446_consen 60 VVILCVPD------DDAVEAVLFGENILAGLRP---GKIIIDMSTIS 97 (163)
T ss_dssp EEEE-SSS------HHHHHHHHHCTTHGGGS-T---TEEEEE-SS--
T ss_pred ceEeeccc------chhhhhhhhhhHHhhcccc---ceEEEecCCcc
Confidence 89988765 3332233332 333433 45777666543
No 285
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=51.25 E-value=1.5e+02 Score=33.03 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=47.7
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccE
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~a 463 (916)
+|-|+|.|..+..++..|... ++.|++.+++++.++...+. +... ..+.+++.+ .+..+|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~-~~~~~dv 62 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQ-RLSAPRV 62 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHh-hcCCCCE
Confidence 688999999999999998753 57888899999887765431 1111 134444443 2457899
Q ss_pred EEEecCC
Q 002491 464 IIVLASD 470 (916)
Q Consensus 464 VIiltdd 470 (916)
|+++.++
T Consensus 63 Ii~~vp~ 69 (298)
T TIGR00872 63 VWVMVPH 69 (298)
T ss_pred EEEEcCc
Confidence 9999865
No 286
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=51.19 E-value=56 Score=36.23 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=49.3
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHH---HHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE---MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~---ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
..|+|.|... .+..++++|... |+.|+++.++... ++..... .....++.++.||.++++.+.++ +
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~-~ 75 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLR------GYTVKATVRDLTDRKKTEHLLAL---DGAKERLKLFKADLLEESSFEQA-I 75 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEECCCcchHHHHHHHhc---cCCCCceEEEecCCCCcchHHHH-H
Confidence 4789999654 577788888753 4566655444322 2222110 00123578899999999988765 3
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
+.++.||-++..
T Consensus 76 ~~~d~vih~A~~ 87 (322)
T PLN02986 76 EGCDAVFHTASP 87 (322)
T ss_pred hCCCEEEEeCCC
Confidence 458888888754
No 287
>PRK07677 short chain dehydrogenase; Provisional
Probab=51.12 E-value=62 Score=34.35 Aligned_cols=77 Identities=25% Similarity=0.249 Sum_probs=48.4
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC-----
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg----- 457 (916)
.++|.|.+. .+..++++|.+ .|..|++++++++..+...+... ..+.++.++.+|.++++.++++-
T Consensus 3 ~~lItG~s~giG~~ia~~l~~------~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAE------EGANVVITGRTKEKLEEAKLEIE--QFPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 578888876 46777788764 24678888888766554433221 11245778888988888776531
Q ss_pred -cccccEEEEec
Q 002491 458 -VSKARAIIVLA 468 (916)
Q Consensus 458 -i~~A~aVIilt 468 (916)
....+.+|-++
T Consensus 75 ~~~~id~lI~~a 86 (252)
T PRK07677 75 KFGRIDALINNA 86 (252)
T ss_pred HhCCccEEEECC
Confidence 12446666554
No 288
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=50.76 E-value=64 Score=36.39 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=53.6
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
..+++|.|. |-.|..+++.|.+. |..|+++...+. ..+.+... + ..+..+.++.+|.++.+.++++ ++
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~---G~~V~~~~r~~~--~~~~~~~~-~----~~~~~~~~~~~Dl~~~~~~~~~-~~ 78 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQR---GYTVHATLRDPA--KSLHLLSK-W----KEGDRLRLFRADLQEEGSFDEA-VK 78 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCChH--HHHHHHHh-h----ccCCeEEEEECCCCCHHHHHHH-Hc
Confidence 457999997 56799999999764 788887765332 22212110 0 0122467789999999888775 45
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
..|.||-++..
T Consensus 79 ~~d~Vih~A~~ 89 (353)
T PLN02896 79 GCDGVFHVAAS 89 (353)
T ss_pred CCCEEEECCcc
Confidence 68999998864
No 289
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=50.71 E-value=1.4e+02 Score=32.82 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=29.2
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHH
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~ 427 (916)
++|.|+|.|..+..+...|.+. ++.|+++++ ++.++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PKRAKAL 38 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HHHHHHH
Confidence 3799999999888888888753 578888888 6565544
No 290
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=50.32 E-value=73 Score=35.34 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=50.4
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh---HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~---e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
..+++|+|.|..+..++..|...+ -..|++++++. ++.+...+++.. ....+.+...|..+.+.+.. .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G-----~~~V~I~~R~~~~~~~a~~l~~~l~~--~~~~~~~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDG-----AKEITIFNIKDDFYERAEQTAEKIKQ--EVPECIVNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEeCCchHHHHHHHHHHHHhh--cCCCceeEEechhhhhHHHh-hh
Confidence 358999999988888888876532 23477788875 455544433211 11233445567666666543 45
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
+.+|.+|-.|+-
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 677888888864
No 291
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=50.31 E-value=46 Score=37.60 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=53.8
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcC--CCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG--GLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~--gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
.++++|.|. |=.|..+++.|.+. |.+|+.++..+.. ....+.+. +.. ......+.++.||.++.+.|.++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~---g~~V~~~d~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~Di~d~~~l~~~- 87 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFL---NQTVIGLDNFSTG-YQHNLDDVRTSVS--EEQWSRFIFIQGDIRKFTDCQKA- 87 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeCCCCc-chhhhhhhhhccc--cccCCceEEEEccCCCHHHHHHH-
Confidence 468999998 77899999999864 7888888753211 11111100 000 00112367899999998888765
Q ss_pred CCCccEEEEecCC
Q 002491 719 LETFDSILILADE 731 (916)
Q Consensus 719 I~~adavIilad~ 731 (916)
++++|.||=++..
T Consensus 88 ~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 CKNVDYVLHQAAL 100 (348)
T ss_pred hhCCCEEEECccc
Confidence 4568999988764
No 292
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=50.30 E-value=1.2e+02 Score=30.83 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=57.2
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCC-----hHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVP-----EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p-----~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 717 (916)
.++|.|+ |..|..+++.|.+.. ...++++...+ .++..+.+.+ .+..|.++..|.+|++.++++
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~l~~--------~g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRELES--------AGARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHHHHH--------TT-EEEEEE--TTSHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHHHHh--------CCCceeeeccCccCHHHHHHH
Confidence 4788885 667999999998752 46788887651 1233344443 245788999999999988764
Q ss_pred --CC----CCccEEEEecCCCCcCccccCcHHHHHHHHHHHHhc
Q 002491 718 --PL----ETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQ 755 (916)
Q Consensus 718 --~I----~~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~ 755 (916)
.+ ..-+.||-.+....+..-.+.|.+.+-.++..|-..
T Consensus 72 ~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g 115 (181)
T PF08659_consen 72 LAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRG 115 (181)
T ss_dssp HHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhH
Confidence 22 355677777653222233345566666666665544
No 293
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=50.16 E-value=33 Score=40.60 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=31.7
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChH
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEK 680 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~ 680 (916)
.++|+|+|+|+.|..+++.|.+. |..+++.|..+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCc
Confidence 67899999999999999999875 8899999976654
No 294
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.08 E-value=50 Score=35.05 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCCh--HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~--~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
.+.++|.|. |..|..+++.|.+. |..|+++...+. ++..+.+.+ .+..+.++++|.++.+.++++-
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA---GAAVAIADLNQDGANAVADEINK--------AGGKAIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHHHHh--------cCceEEEEECCCCCHHHHHHHH
Confidence 367999998 45699999999764 778888876442 122222221 1234677899999998876531
Q ss_pred ------CCCccEEEEecCC
Q 002491 719 ------LETFDSILILADE 731 (916)
Q Consensus 719 ------I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 76 ~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 76 DKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHcCCCCEEEECCcc
Confidence 2347888877754
No 295
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.04 E-value=1.1e+02 Score=32.56 Aligned_cols=83 Identities=12% Similarity=-0.010 Sum_probs=51.8
Q ss_pred CCeEEEEcc-c-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002491 642 PEKILFCGW-R-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 718 (916)
Q Consensus 642 ~~hilI~Gw-g-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 718 (916)
.+.++|.|. | ..|..+++.|.+. |..|++++..+ ++.+...+. + ...+....+.++++|.++++.++++-
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~---G~~V~~~~~~~--~~~~~~~~~-~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 89 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE---GARVVISDIHE--RRLGETADE-L-AAELGLGRVEAVVCDVTSEAQVDALID 89 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H-HHhcCCceEEEEEccCCCHHHHHHHHH
Confidence 478999998 4 5899999999764 77888876533 222222110 0 00112234677899999987665421
Q ss_pred -----CCCccEEEEecCC
Q 002491 719 -----LETFDSILILADE 731 (916)
Q Consensus 719 -----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 90 ~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 90 AAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2367888887763
No 296
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=49.98 E-value=49 Score=37.39 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=50.3
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh---cccCCccEEEEEECCCCHHHHhccCc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~---~~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
.+|+|.|. |-.|..++++|... +..|+.++.............. ......++.++.||..+.+.|.++ +
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~-~ 88 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFL------NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA-C 88 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-h
Confidence 57999997 44577888888753 4677777764321111111100 000112577899999999887755 3
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
++++.||=++..
T Consensus 89 ~~~d~ViHlAa~ 100 (348)
T PRK15181 89 KNVDYVLHQAAL 100 (348)
T ss_pred hCCCEEEECccc
Confidence 468888888753
No 297
>PRK08264 short chain dehydrogenase; Validated
Probab=49.85 E-value=1.2e+02 Score=31.68 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCC-eEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~-~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-- 717 (916)
.++++|.|. |..|..+++.|.+. |. .|+++...+. +.+. . +..+.++.+|.++.+.++++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~---G~~~V~~~~r~~~--~~~~---~--------~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR---GAAKVYAAARDPE--SVTD---L--------GPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CcccEEEEecChh--hhhh---c--------CCceEEEEecCCCHHHHHHHHH
Confidence 467999997 56699999999864 66 7777775432 1111 1 12366789999998887653
Q ss_pred CCCCccEEEEecCC
Q 002491 718 PLETFDSILILADE 731 (916)
Q Consensus 718 ~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 70 ~~~~id~vi~~ag~ 83 (238)
T PRK08264 70 AASDVTILVNNAGI 83 (238)
T ss_pred hcCCCCEEEECCCc
Confidence 23457888887764
No 298
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.78 E-value=94 Score=32.76 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=52.3
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|. |..|..+++.|.+. |..++++...+. ..+.+.+. + .. .+..+.++.+|.++++.++++-
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~---g~~v~~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE---GAKVVIADLNDE--AAAAAAEA-L--QK-AGGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCCHH--HHHHHHHH-H--Hh-cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 58999997 55699999999764 888988876432 22222110 0 00 1234677899999999875531
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 76 ~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 76 VETFGGVDILVNNAGI 91 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2467888887753
No 299
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.78 E-value=90 Score=35.14 Aligned_cols=68 Identities=22% Similarity=0.153 Sum_probs=45.2
Q ss_pred ccceEEEEecchh-HHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHh
Q 002491 381 EKNHILILGWSDK-LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLK 454 (916)
Q Consensus 381 ~~~HIII~G~g~~-~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~ 454 (916)
...|++|.|..+- +..++.++.. +++.|.++-++...+..+.+.+.......+|.|..+|-.+.+.-.
T Consensus 32 ~~~hi~itggS~glgl~la~e~~~------~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~ 100 (331)
T KOG1210|consen 32 PRRHILITGGSSGLGLALALECKR------EGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVS 100 (331)
T ss_pred ccceEEEecCcchhhHHHHHHHHH------ccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHH
Confidence 3489999998863 4445556543 468999998888777776655433333345778888876655433
No 300
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.72 E-value=57 Score=34.37 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=50.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEE-EcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--c
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVL-id~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i 458 (916)
.+++|.|.+. .+..++++|... |..|++ ..++.+..+...+... ..+.++.++.+|.++++.+.++= +
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~------g~~v~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEE------GYDIAVNYARSRKAAEETAEEIE--ALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5799999865 577778888753 345544 4666655544433221 12346788999999999876542 1
Q ss_pred ----ccccEEEEecCC
Q 002491 459 ----SKARAIIVLASD 470 (916)
Q Consensus 459 ----~~A~aVIiltdd 470 (916)
...|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 256778777653
No 301
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=49.66 E-value=60 Score=36.01 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhc-CCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTD-GGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~-er~~~l~~-~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
.++++|.|. |-.|..+++.|.+. |..|+++...+.. +....+.. .+ ....+.++.||.++++.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~- 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR---GYTINATVRDPKDRKKTDHLLALDG------AKERLKLFKADLLDEGSFELA- 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC---CCEEEEEEcCCcchhhHHHHHhccC------CCCceEEEeCCCCCchHHHHH-
Confidence 468999998 56799999999864 7777766433221 11111111 01 012467789999999888765
Q ss_pred CCCccEEEEecCC
Q 002491 719 LETFDSILILADE 731 (916)
Q Consensus 719 I~~adavIilad~ 731 (916)
++..|.||-++..
T Consensus 75 ~~~~d~vih~A~~ 87 (325)
T PLN02989 75 IDGCETVFHTASP 87 (325)
T ss_pred HcCCCEEEEeCCC
Confidence 4568999998864
No 302
>PLN02366 spermidine synthase
Probab=49.63 E-value=80 Score=35.55 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=49.3
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCCh-HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~-~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
.+++|+++|.|.-+ +++++.++ .+...++++|-++. -+.++..... + ...+.+.++.++.||+.. .|++..-
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~-~-~~~~~dpRv~vi~~Da~~--~l~~~~~ 163 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARH-SSVEQIDICEIDKMVIDVSKKFFPD-L-AVGFDDPRVNLHIGDGVE--FLKNAPE 163 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhh-h-ccccCCCceEEEEChHHH--HHhhccC
Confidence 47899999998854 45666665 22357888886442 1222221100 0 012445568889999643 4555444
Q ss_pred CCccEEEEecC
Q 002491 720 ETFDSILILAD 730 (916)
Q Consensus 720 ~~adavIilad 730 (916)
+++|.||+-+.
T Consensus 164 ~~yDvIi~D~~ 174 (308)
T PLN02366 164 GTYDAIIVDSS 174 (308)
T ss_pred CCCCEEEEcCC
Confidence 68999988543
No 303
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.61 E-value=40 Score=37.22 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=52.2
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~-er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
++++|.|. |-.|..+++.|.+. |.+|+++...+.. .....+... + . ....+.++.||.++.+.+.++ ++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~--~--~-~~~~~~~~~~Dl~~~~~~~~~-~~ 75 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR---GYTVKATVRDPNDPKKTEHLLAL--D--G-AKERLHLFKANLLEEGSFDSV-VD 75 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC---CCEEEEEEcCCCchhhHHHHHhc--c--C-CCCceEEEeccccCcchHHHH-Hc
Confidence 57999997 67799999999864 7788776543221 111111110 0 0 012467899999998877765 45
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
.+|.||-++..
T Consensus 76 ~~d~Vih~A~~ 86 (322)
T PLN02662 76 GCEGVFHTASP 86 (322)
T ss_pred CCCEEEEeCCc
Confidence 78999998864
No 304
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.56 E-value=66 Score=34.03 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=30.5
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~ 429 (916)
..++|.|.+. .+..++++|... |..|+++.++++.++...+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~------G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARL------GATLILCDQDQSALKDTYE 47 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHH
Confidence 5788999887 577788888753 5678888888877665543
No 305
>PRK12939 short chain dehydrogenase; Provisional
Probab=49.54 E-value=1.1e+02 Score=32.15 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|. |..|..+++.|.+. |..+++++..+ +..+.+.+. + .. .+..+.++.+|.++++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA---GATVAFNDGLA--AEARELAAA-L--EA-AGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 468999997 56699999999864 78888886543 222222110 0 00 1224677899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 78 AAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2468888887753
No 306
>PLN02650 dihydroflavonol-4-reductase
Probab=49.43 E-value=46 Score=37.48 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~-er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
.++|+|.|. |-.|..+++.|.+. |.+|+++...+.. +....+.+. + . ....+.++.||.++.+.++++ +
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~---~-~-~~~~~~~v~~Dl~d~~~~~~~-~ 75 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER---GYTVRATVRDPANVKKVKHLLDL---P-G-ATTRLTLWKADLAVEGSFDDA-I 75 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC---CCEEEEEEcCcchhHHHHHHHhc---c-C-CCCceEEEEecCCChhhHHHH-H
Confidence 458999998 67799999999764 7788776543211 111111110 0 0 012467889999999888765 5
Q ss_pred CCccEEEEecCC
Q 002491 720 ETFDSILILADE 731 (916)
Q Consensus 720 ~~adavIilad~ 731 (916)
+.+|.|+-++..
T Consensus 76 ~~~d~ViH~A~~ 87 (351)
T PLN02650 76 RGCTGVFHVATP 87 (351)
T ss_pred hCCCEEEEeCCC
Confidence 578999988864
No 307
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=49.41 E-value=1.5e+02 Score=31.22 Aligned_cols=80 Identities=15% Similarity=0.029 Sum_probs=51.2
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 717 (916)
+.++|.|.+ ..|..+++.|.+. |..++++...+ ++.+.+.+. +. . .+..+.++.+|.++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~-l~--~-~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD---GFAVAVADLNE--ETAKETAKE-IN--Q-AGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-HH--h-cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 368999974 5699999999764 78888887542 222222110 00 0 123467789999999877653
Q ss_pred --CCCCccEEEEecCC
Q 002491 718 --PLETFDSILILADE 731 (916)
Q Consensus 718 --~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHcCCCCEEEECCCc
Confidence 12357888877754
No 308
>PRK07060 short chain dehydrogenase; Provisional
Probab=49.38 E-value=53 Score=34.48 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=49.1
Q ss_pred ceEEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--cc
Q 002491 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (916)
Q Consensus 383 ~HIII~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i~ 459 (916)
+.++|.|.+ ..+..+++.|... ++.|+++.++++..+..... .++.++.+|.++.+.++++- ..
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~ 76 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAAG 76 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHhC
Confidence 578999985 4577777777642 46788888887665544321 13457789999988776542 23
Q ss_pred cccEEEEecC
Q 002491 460 KARAIIVLAS 469 (916)
Q Consensus 460 ~A~aVIiltd 469 (916)
..|.+|-...
T Consensus 77 ~~d~vi~~ag 86 (245)
T PRK07060 77 AFDGLVNCAG 86 (245)
T ss_pred CCCEEEECCC
Confidence 4677776664
No 309
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=49.29 E-value=1.7e+02 Score=33.65 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=27.2
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d 420 (916)
.+.+|+|+|.|..+..++..|....- ..++++|.|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCC
Confidence 45689999999999999999976532 356777776
No 310
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=49.29 E-value=22 Score=39.67 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=47.1
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcc--cCCccEEEEEECCCCHHHHhccCcccc
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~--~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
+|.|+|.|..+..++..|...+ -.+.++++|.+++..+....++... +....+.+. + .+.++ +.+|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g----~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~-----l~~a 69 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQG----IADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSD-----CKDA 69 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHH-----hCCC
Confidence 7999999998888888876432 1257899998877665544333111 111222222 2 23333 4789
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.||++++.
T Consensus 70 DIVIitag~ 78 (306)
T cd05291 70 DIVVITAGA 78 (306)
T ss_pred CEEEEccCC
Confidence 999999976
No 311
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.13 E-value=44 Score=35.97 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=51.2
Q ss_pred CCeEEEEccc---ccHHHHHHHHHHhcCCCCeEEEEccC-ChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC
Q 002491 642 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL 717 (916)
Q Consensus 642 ~~hilI~Gwg---~~~~~li~~L~~~~~~g~~v~II~~~-p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a 717 (916)
.+.++|.|.+ ..|..+++.|.+. |..|+++... ..+++.+.+.+ .+++..+.+++.|.+|++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~---G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA---GAKLVFTYAGERLEKEVRELAD------TLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC---CCEEEEecCcccchHHHHHHHH------HcCCCceEEEecCCCCHHHHHHH
Confidence 4689999984 7799999999864 8888887532 12233333332 12223466789999999876431
Q ss_pred ------CCCCccEEEEecC
Q 002491 718 ------PLETFDSILILAD 730 (916)
Q Consensus 718 ------~I~~adavIilad 730 (916)
.....|.+|-.+.
T Consensus 78 ~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHhCCCccEEEECcc
Confidence 1345777776543
No 312
>PRK06101 short chain dehydrogenase; Provisional
Probab=48.93 E-value=37 Score=35.88 Aligned_cols=75 Identities=8% Similarity=-0.021 Sum_probs=49.0
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--C
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--L 719 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--I 719 (916)
+.++|.|.+. .|..++++|.+ .|..|++++.. +++.+.+.+.+ . .+.++.+|.++++.++++- +
T Consensus 2 ~~vlItGas~giG~~la~~L~~---~G~~V~~~~r~--~~~~~~~~~~~------~--~~~~~~~D~~~~~~~~~~~~~~ 68 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAK---QGWQVIACGRN--QSVLDELHTQS------A--NIFTLAFDVTDHPGTKAALSQL 68 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHh---CCCEEEEEECC--HHHHHHHHHhc------C--CCeEEEeeCCCHHHHHHHHHhc
Confidence 4689999854 59999999976 48888888754 34444444311 2 2567899999998776631 1
Q ss_pred -CCccEEEEecC
Q 002491 720 -ETFDSILILAD 730 (916)
Q Consensus 720 -~~adavIilad 730 (916)
..-|.+|..+.
T Consensus 69 ~~~~d~~i~~ag 80 (240)
T PRK06101 69 PFIPELWIFNAG 80 (240)
T ss_pred ccCCCEEEEcCc
Confidence 12356665554
No 313
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=48.81 E-value=82 Score=37.11 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=27.9
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~v 424 (916)
...++|+|+|..+..++..+.. .|..|+++|.++.+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~------~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG------LGARVIVTEVDPICA 248 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCCchhh
Confidence 4589999999977777766653 246799999888654
No 314
>PRK05993 short chain dehydrogenase; Provisional
Probab=48.80 E-value=43 Score=36.33 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=50.4
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|. |..|..+++.|.+. |..|++++..+ +..+.+.+. .+.++.+|.+|++.++++-
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~---G~~Vi~~~r~~--~~~~~l~~~----------~~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD---GWRVFATCRKE--EDVAALEAE----------GLEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHC----------CceEEEccCCCHHHHHHHHHH
Confidence 457999999 56699999999763 88888887543 334444331 2456899999988765431
Q ss_pred C-----CCccEEEEecC
Q 002491 719 L-----ETFDSILILAD 730 (916)
Q Consensus 719 I-----~~adavIilad 730 (916)
+ ...|.+|-.+.
T Consensus 69 ~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 69 VLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHcCCCccEEEECCC
Confidence 1 35687777664
No 315
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=48.67 E-value=56 Score=34.30 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=52.7
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCCh--HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE--KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~--~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
.++++|.|. |..|..+++.|.+. |..|+++...+. .+..+.+.. .+..+.++.+|.++.+.++++-
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD---GAEVIVVDICGDDAAATAELVEA--------AGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHH
Confidence 457999997 45699999999864 778888876432 122222222 1224677899999998876631
Q ss_pred ------CCCccEEEEecCC
Q 002491 719 ------LETFDSILILADE 731 (916)
Q Consensus 719 ------I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 75 ~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGI 93 (251)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 2368888887753
No 316
>PRK06483 dihydromonapterin reductase; Provisional
Probab=48.62 E-value=50 Score=34.65 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=38.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
...++|.|.+. .+..++++|... +..|++++++++.....+.. .++.++.+|.++++.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~ 63 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ------GQPVIVSYRTHYPAIDGLRQ-------AGAQCIQADFSTNAGIMA 63 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCchhHHHHHHH-------cCCEEEEcCCCCHHHHHH
Confidence 35789999865 577778887642 56777888766433222221 135567778887776654
No 317
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=48.52 E-value=2.6e+02 Score=29.20 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=73.6
Q ss_pred cccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcc
Q 002491 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (916)
Q Consensus 380 ~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~ 459 (916)
...+|++=+|.|. +.+.-|..... ..-.|+-+|+|++.++..-+ ...++.-.++.++.|++ ++.|. ++.
T Consensus 33 ~~g~~l~DIGaGt--Gsi~iE~a~~~----p~~~v~AIe~~~~a~~~~~~-N~~~fg~~n~~vv~g~A--p~~L~--~~~ 101 (187)
T COG2242 33 RPGDRLWDIGAGT--GSITIEWALAG----PSGRVIAIERDEEALELIER-NAARFGVDNLEVVEGDA--PEALP--DLP 101 (187)
T ss_pred CCCCEEEEeCCCc--cHHHHHHHHhC----CCceEEEEecCHHHHHHHHH-HHHHhCCCcEEEEeccc--hHhhc--CCC
Confidence 3456777788884 55555554322 34688999999988765433 22344556789999986 55666 455
Q ss_pred cccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHH----HHHcCC
Q 002491 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPL----VKLVGG 516 (916)
Q Consensus 460 ~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~----l~~~Ga 516 (916)
+.|++++-... ....-+.+|+ ..+.| ..++|+.+...|+... +++.|.
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~~--~~l~~--ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAAW--ERLKP--GGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHHH--HHcCc--CCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 99999998753 1222233332 33445 4579998888776443 445666
No 318
>PLN02494 adenosylhomocysteinase
Probab=48.49 E-value=63 Score=38.50 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=28.2
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~v 424 (916)
...++|+|+|..+..++..+.. .|..|++++.++.+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka------~Ga~VIV~e~dp~r~ 290 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA------AGARVIVTEIDPICA 290 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCchhh
Confidence 5689999999987777777653 246788899887653
No 319
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=48.25 E-value=2.1e+02 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=28.0
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
.+-||+|+|.|-.+..+++.|....- ..+.++|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCE
Confidence 46799999999999999999986531 4567777663
No 320
>PRK08263 short chain dehydrogenase; Provisional
Probab=48.19 E-value=65 Score=34.80 Aligned_cols=77 Identities=16% Similarity=0.018 Sum_probs=51.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
..++|.|.+. .+..++++|.+ .+..|++++++++..+...+.. +..+.++.+|.++++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~------~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALE------RGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHH------CCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 3578888765 46777788764 2467888888877666543321 33577889999999887653
Q ss_pred -CcccccEEEEecCC
Q 002491 457 -SVSKARAIIVLASD 470 (916)
Q Consensus 457 -gi~~A~aVIiltdd 470 (916)
.....+.+|-++..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 73 EHFGRLDIVVNNAGY 87 (275)
T ss_pred HHcCCCCEEEECCCC
Confidence 12345777777654
No 321
>PRK08251 short chain dehydrogenase; Provisional
Probab=48.13 E-value=1.8e+02 Score=30.50 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=52.9
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 717 (916)
+.++|.|... .|..+++.|.+. |..++++...+ ++.+.+.+. + ....++..+.++++|.++++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~---g~~v~~~~r~~--~~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAK---GRDLALCARRT--DRLEELKAE-L-LARYPGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H-HhhCCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 5689999754 489999999764 67888887543 222222210 0 0012345678899999999876542
Q ss_pred --CCCCccEEEEecCC
Q 002491 718 --PLETFDSILILADE 731 (916)
Q Consensus 718 --~I~~adavIilad~ 731 (916)
.....|.+|..+..
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 76 RDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHcCCCCEEEECCCc
Confidence 23467888887753
No 322
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=47.99 E-value=28 Score=34.78 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=43.9
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh-cc-cCCc----cEEEEEECCCCHHHHhccC
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FD-FMGT----SVICRSGSPLILADLKKVS 457 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~-~~-~~~~----~V~~i~GD~t~~e~L~rAg 457 (916)
+|.|||.|..+..++..|.. .++.|.+-.++++.++.+..... .. +.+. .+.+ .+ +|++ -
T Consensus 1 KI~ViGaG~~G~AlA~~la~------~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~----t~---dl~~-a 66 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD------NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA----TT---DLEE-A 66 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH------CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE----ES---SHHH-H
T ss_pred CEEEECcCHHHHHHHHHHHH------cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc----cc---CHHH-H
Confidence 48899999988877777764 25899999999988776654321 01 1111 1211 12 2332 2
Q ss_pred cccccEEEEecCC
Q 002491 458 VSKARAIIVLASD 470 (916)
Q Consensus 458 i~~A~aVIiltdd 470 (916)
+++|+.||+..+.
T Consensus 67 ~~~ad~IiiavPs 79 (157)
T PF01210_consen 67 LEDADIIIIAVPS 79 (157)
T ss_dssp HTT-SEEEE-S-G
T ss_pred hCcccEEEecccH
Confidence 4688999998865
No 323
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=47.93 E-value=41 Score=32.95 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
..++++|+|.|..|..+++.|.+. . +..+++++..+ ++.+.+.+. +... .+..+..+.+ ++ ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g-~~~v~v~~r~~--~~~~~~~~~------~~~~---~~~~~~~~~~---~~-~~ 80 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-G-AAKIVIVNRTL--EKAKALAER------FGEL---GIAIAYLDLE---EL-LA 80 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-CCEEEEEcCCH--HHHHHHHHH------Hhhc---ccceeecchh---hc-cc
Confidence 357899999999999999999764 1 36788887643 444444331 1110 0111223322 22 78
Q ss_pred CccEEEEecCCC
Q 002491 721 TFDSILILADES 732 (916)
Q Consensus 721 ~adavIilad~~ 732 (916)
++|.||..+..+
T Consensus 81 ~~Dvvi~~~~~~ 92 (155)
T cd01065 81 EADLIINTTPVG 92 (155)
T ss_pred cCCEEEeCcCCC
Confidence 999999887653
No 324
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=47.69 E-value=2.2e+02 Score=30.25 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.3
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
.+-||+|+|.|..+..+++.|....- ..++++|.|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 35699999999999999999986532 3556666553
No 325
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.67 E-value=2e+02 Score=32.97 Aligned_cols=83 Identities=13% Similarity=0.025 Sum_probs=48.1
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh-------------------HHHHHHHHhhhcccCCccEE
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-------------------EEMEMDIAKLEFDFMGTSVI 441 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~-------------------e~ve~~l~~~~~~~~~~~V~ 441 (916)
.+-+|+|+|.|..+..+++.|....- ..+.++|.|. .+.+.+.+++..-.....+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~ 101 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVT 101 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEE
Confidence 35699999999999999999986532 3455666654 12222222211111234455
Q ss_pred EEEECCCCHHHHhccCcccccEEEEecCC
Q 002491 442 CRSGSPLILADLKKVSVSKARAIIVLASD 470 (916)
Q Consensus 442 ~i~GD~t~~e~L~rAgi~~A~aVIiltdd 470 (916)
.+....+.++...- ++.+|.||..+|+
T Consensus 102 ~~~~~i~~~~~~~~--~~~~DvVvd~~d~ 128 (355)
T PRK05597 102 VSVRRLTWSNALDE--LRDADVILDGSDN 128 (355)
T ss_pred EEEeecCHHHHHHH--HhCCCEEEECCCC
Confidence 55555544332222 4678888888764
No 326
>PRK05693 short chain dehydrogenase; Provisional
Probab=47.61 E-value=59 Score=35.07 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=49.0
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc-----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA----- 456 (916)
+.++|.|.+. .+..++++|.. .|..|++++++++..+.... .++.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKA------AGYEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 3689999765 56777888764 25788888888766554321 2356788999998877653
Q ss_pred -CcccccEEEEecC
Q 002491 457 -SVSKARAIIVLAS 469 (916)
Q Consensus 457 -gi~~A~aVIiltd 469 (916)
...+.|.+|-++.
T Consensus 68 ~~~~~id~vi~~ag 81 (274)
T PRK05693 68 AEHGGLDVLINNAG 81 (274)
T ss_pred HhcCCCCEEEECCC
Confidence 1235677777664
No 327
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=47.10 E-value=3.2e+02 Score=30.30 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=45.9
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccccE
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~a 463 (916)
+|-|+|.|..+..+++.|... ++.|++.|++++.++...+ .++.+ ..+.+++.+. .++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~~~~~~~~--------~g~~~----~~~~~e~~~~-~~~~dv 62 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPEAVEALAE--------EGATG----ADSLEELVAK-LPAPRV 62 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHH--------CCCee----cCCHHHHHhh-cCCCCE
Confidence 688999999999999999753 4788889999888776532 12211 2234443221 235788
Q ss_pred EEEecCC
Q 002491 464 IIVLASD 470 (916)
Q Consensus 464 VIiltdd 470 (916)
||++..+
T Consensus 63 vi~~v~~ 69 (301)
T PRK09599 63 VWLMVPA 69 (301)
T ss_pred EEEEecC
Confidence 8888865
No 328
>PRK03612 spermidine synthase; Provisional
Probab=47.07 E-value=76 Score=38.40 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC-C---CccCcCCceEEEEEcCcCCHhHHh
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-L---DISGLMNIKLVHREGNAVIRRHLE 715 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~g-l---~~~~l~~~~v~~i~GD~t~~~~L~ 715 (916)
+.+++|+++|.|.-+ +++++.++ .+..+++++|-++ +..+...++. + ....+++.++.++.||+. +.++
T Consensus 296 ~~~~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~--~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAF--NWLR 368 (521)
T ss_pred CCCCeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHH--HHHH
Confidence 346799999998553 44555544 2226899999743 5555554421 1 011234456788999975 4455
Q ss_pred cCCCCCccEEEEec
Q 002491 716 SLPLETFDSILILA 729 (916)
Q Consensus 716 ~a~I~~adavIila 729 (916)
+. -+++|.|++-.
T Consensus 369 ~~-~~~fDvIi~D~ 381 (521)
T PRK03612 369 KL-AEKFDVIIVDL 381 (521)
T ss_pred hC-CCCCCEEEEeC
Confidence 43 36899888743
No 329
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=47.02 E-value=1.3e+02 Score=31.96 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=52.3
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|... .|..++++|.+. |..|++++....++..+.+.+. +..+.++++|.++++.++++=
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~---G~~vv~~~~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEA---GCDIVGINIVEPTETIEQVTAL--------GRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEecCcchHHHHHHHHhc--------CCeEEEEECCCCCHHHHHHHHHH
Confidence 36899999864 699999999864 7888887654333333434321 224667899999987765421
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 79 ~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 79 AVAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2357877776653
No 330
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.01 E-value=72 Score=36.00 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=46.6
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
.-+||.|.+. .+.+.+++|.. .|..|++.-+|.+..++..++........++.+++.|-++.+..++
T Consensus 36 ~~~vVTGansGIG~eta~~La~------~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 36 KVALVTGATSGIGFETARELAL------RGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred cEEEEECCCCchHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHH
Confidence 3677888876 47788888875 3578889989887777666554433445567777777777666554
No 331
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=46.98 E-value=74 Score=33.52 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=47.5
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-- 457 (916)
.+.++|.|.+. .+..+++.|.+. +..|+++ .++++..+....... ..+.++.++.+|.++.+.++++-
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR------GWSVGINYARDAAAAEETADAVR--AAGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCCHHHHHHHHHHHH--hcCCcEEEEEeccCCHHHHHHHHHH
Confidence 35799999876 467778888652 3455544 455554443332211 12346788889988887765421
Q ss_pred ----cccccEEEEecC
Q 002491 458 ----VSKARAIIVLAS 469 (916)
Q Consensus 458 ----i~~A~aVIiltd 469 (916)
....|.+|.++.
T Consensus 74 ~~~~~~~id~li~~ag 89 (248)
T PRK06947 74 VQSAFGRLDALVNNAG 89 (248)
T ss_pred HHHhcCCCCEEEECCc
Confidence 234667776654
No 332
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=46.93 E-value=87 Score=36.27 Aligned_cols=79 Identities=11% Similarity=0.007 Sum_probs=51.6
Q ss_pred CCCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHH----HHHhhcCCCCccCcCCceEEEEEcCcCCHhHHh
Q 002491 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKER----EKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 715 (916)
Q Consensus 641 ~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er----~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~ 715 (916)
...+++|.|. |..|..++++|.+. |.+|+++...+..-. .+.+.+ ..++ +.++.||.+|.+.|+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~---G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~--v~~v~~Dl~d~~~l~ 127 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRR---GYNVVAVAREKSGIRGKNGKEDTKK------ELPG--AEVVFGDVTDADSLR 127 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEEechhhccccchhhHHhh------hcCC--ceEEEeeCCCHHHHH
Confidence 4457999998 66799999999764 788888875432100 000100 1123 567899999999987
Q ss_pred cCCCC---CccEEEEecC
Q 002491 716 SLPLE---TFDSILILAD 730 (916)
Q Consensus 716 ~a~I~---~adavIilad 730 (916)
++--+ .+|.|+..+.
T Consensus 128 ~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 128 KVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHHhCCCCcEEEECCc
Confidence 75222 6898886543
No 333
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=46.57 E-value=14 Score=44.18 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhhhhccCCCCCc-CCccCceeeeeehhhhHHHHHHHHHHHHHHH
Q 002491 312 SSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAI 365 (916)
Q Consensus 312 ~s~~dA~y~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i 365 (916)
.++..|.||+|-.+...|-|+.+ -+...|+..++|.=+.|++++.-.+-++.++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 58999999999999999999875 6778898888877777777666655555443
No 334
>PRK08643 acetoin reductase; Validated
Probab=46.54 E-value=1.5e+02 Score=31.47 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=51.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
+.++|.|.+. .|..+++.|.+. |..+++++..+ ++.+.+... + .. .+..+.++.+|.++++.++++-
T Consensus 3 k~~lItGas~giG~~la~~l~~~---G~~v~~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVED---GFKVAIVDYNE--ETAQAAADK-L--SK-DGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5789999865 489999999764 78888887543 222222210 0 00 1234667899999998765421
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 74 ~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 74 VDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2467888887753
No 335
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=46.48 E-value=73 Score=37.29 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=27.8
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHH
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~v 424 (916)
...++|+|+|..+..++..+.. .|..|+++|.|+.+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~------~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG------MGARVIVTEVDPIRA 231 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh------CcCEEEEEeCChhhH
Confidence 4589999999977777766653 246788899888653
No 336
>PRK12320 hypothetical protein; Provisional
Probab=46.47 E-value=97 Score=38.85 Aligned_cols=68 Identities=24% Similarity=0.179 Sum_probs=47.8
Q ss_pred eEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 384 HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
+|+|.|. |-.+..++++|... ++.|+++++.+... ...++.+++||.++.. +.++ +..+|
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~------G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~~-l~~a-l~~~D 62 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA------GHTVSGIAQHPHDA-----------LDPRVDYVCASLRNPV-LQEL-AGEAD 62 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC------CCEEEEEeCChhhc-----------ccCCceEEEccCCCHH-HHHH-hcCCC
Confidence 6999995 65677888888752 57888888654321 1125778999999985 5433 45789
Q ss_pred EEEEecCC
Q 002491 463 AIIVLASD 470 (916)
Q Consensus 463 aVIiltdd 470 (916)
.||-++..
T Consensus 63 ~VIHLAa~ 70 (699)
T PRK12320 63 AVIHLAPV 70 (699)
T ss_pred EEEEcCcc
Confidence 99998864
No 337
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.46 E-value=68 Score=34.27 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=37.3
Q ss_pred ceEEEEecc---hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g---~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
.+++|.|.+ ..+..++++|.+. |..|++..++. +.+..+.+. ...++.++..|.++++..++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~~-~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~ 72 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQND-RMKKSLQKL----VDEEDLLVECDVASDESIER 72 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCch-HHHHHHHhh----ccCceeEEeCCCCCHHHHHH
Confidence 478888986 4788899998753 56788887763 333332221 11234555666666555443
No 338
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.46 E-value=37 Score=37.98 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=52.4
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-CCCC
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PLET 721 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-~I~~ 721 (916)
.|||+|+ |=+|...+.+|.+ .|.+++|+++...--+.. +....+.|++||..|++.|.+. .-.+
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~---~G~~vvV~DNL~~g~~~~-----------v~~~~~~f~~gDi~D~~~L~~vf~~~~ 67 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLK---TGHEVVVLDNLSNGHKIA-----------LLKLQFKFYEGDLLDRALLTAVFEENK 67 (329)
T ss_pred eEEEecCcchhHHHHHHHHHH---CCCeEEEEecCCCCCHHH-----------hhhccCceEEeccccHHHHHHHHHhcC
Confidence 5888887 6679999999976 489999999753211111 1121146889999999999873 3447
Q ss_pred ccEEEEecCC
Q 002491 722 FDSILILADE 731 (916)
Q Consensus 722 adavIilad~ 731 (916)
.|+||=++..
T Consensus 68 idaViHFAa~ 77 (329)
T COG1087 68 IDAVVHFAAS 77 (329)
T ss_pred CCEEEECccc
Confidence 8888877764
No 339
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=46.32 E-value=1.2e+02 Score=31.76 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=51.0
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+. .|..+++.|.+. |..+++......+ ..+.+.+. + .. .+.++.+++.|.++++.+.++-
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~---g~~v~~~~~~~~~-~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE---GAKVVINYNSSKE-AAENLVNE-L--GK-EGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc---CCEEEEEcCCcHH-HHHHHHHH-H--Hh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999754 489999999864 7777765432222 22222110 0 00 1234778999999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.++-.+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2347888887764
No 340
>PRK05872 short chain dehydrogenase; Provisional
Probab=46.28 E-value=77 Score=34.85 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=49.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..++++|.. .|..|+++.++++.++...+... .+..+..+.+|.++++.++++-
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~------~G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHA------RGAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788888765 56777777764 25678888988877666544321 1234556668888877765531
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|....
T Consensus 80 ~~~~g~id~vI~nAG 94 (296)
T PRK05872 80 VERFGGIDVVVANAG 94 (296)
T ss_pred HHHcCCCCEEEECCC
Confidence 123455555543
No 341
>PRK08017 oxidoreductase; Provisional
Probab=46.24 E-value=46 Score=35.27 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=47.9
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--CC
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--PL 719 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~I 719 (916)
+.++|.|. |..|..+++.|.+. |..++++...+ ++.+.+.+. .+.++.+|.++.+.++++ .+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~---g~~v~~~~r~~--~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~~i 67 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR---GYRVLAACRKP--DDVARMNSL----------GFTGILLDLDDPESVERAADEV 67 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHhHHHHhC----------CCeEEEeecCCHHHHHHHHHHH
Confidence 57999999 77899999999754 77888877543 343333321 245678999998776541 12
Q ss_pred -----CCccEEEEecC
Q 002491 720 -----ETFDSILILAD 730 (916)
Q Consensus 720 -----~~adavIilad 730 (916)
...|.++-.+.
T Consensus 68 ~~~~~~~~~~ii~~ag 83 (256)
T PRK08017 68 IALTDNRLYGLFNNAG 83 (256)
T ss_pred HHhcCCCCeEEEECCC
Confidence 34566665554
No 342
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.11 E-value=53 Score=32.09 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=44.9
Q ss_pred EEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCccE
Q 002491 645 ILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDS 724 (916)
Q Consensus 645 ilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ada 724 (916)
|+|+|-|..|..++-.|.+. |.+|+++... + +.+.+.+.|+......+.......-..... ....+.+|.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~---g~~V~l~~r~--~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA---GHDVTLVSRS--P-RLEAIKEQGLTITGPDGDETVQPPIVISAP----SADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT---TCEEEEEESH--H-HHHHHHHHCEEEEETTEEEEEEEEEEESSH----GHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHHC---CCceEEEEcc--c-cHHhhhheeEEEEecccceecccccccCcc----hhccCCCcE
Confidence 68999999999999999863 8889999853 2 455565555421111111111111111111 456788998
Q ss_pred EEEec
Q 002491 725 ILILA 729 (916)
Q Consensus 725 vIila 729 (916)
+++.+
T Consensus 71 viv~v 75 (151)
T PF02558_consen 71 VIVAV 75 (151)
T ss_dssp EEE-S
T ss_pred EEEEe
Confidence 88876
No 343
>PRK06057 short chain dehydrogenase; Provisional
Probab=46.10 E-value=59 Score=34.61 Aligned_cols=73 Identities=14% Similarity=0.037 Sum_probs=45.6
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
..++|.|.+. .+..++++|.+. +..|++++++++..+...+.. ...++.+|.++++.++++--
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE------GATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHHH
Confidence 5789999865 577788888652 578888888876655443321 11356778888776654321
Q ss_pred ---ccccEEEEec
Q 002491 459 ---SKARAIIVLA 468 (916)
Q Consensus 459 ---~~A~aVIilt 468 (916)
.+.|.+|-++
T Consensus 75 ~~~~~id~vi~~a 87 (255)
T PRK06057 75 ETYGSVDIAFNNA 87 (255)
T ss_pred HHcCCCCEEEECC
Confidence 2345555554
No 344
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=45.99 E-value=36 Score=38.13 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=46.5
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
...+++|+|.|..|..+++.|... .+..|++++.. .+|.+.+++ .+.. . ..+.+.+.++ +.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~--g~~~V~v~~r~--~~ra~~la~------~~g~-~-------~~~~~~~~~~-l~ 237 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK--GVAEITIANRT--YERAEELAK------ELGG-N-------AVPLDELLEL-LN 237 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCC--HHHHHHHHH------HcCC-e-------EEeHHHHHHH-Hh
Confidence 356899999999999999999753 23678888754 356555544 1211 1 1122334443 66
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
++|.||..+..
T Consensus 238 ~aDvVi~at~~ 248 (311)
T cd05213 238 EADVVISATGA 248 (311)
T ss_pred cCCEEEECCCC
Confidence 79988888753
No 345
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=45.95 E-value=28 Score=30.42 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=25.7
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
+++|+|.|..+.+++..|... +..|.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999998753 46777777654
No 346
>PRK06182 short chain dehydrogenase; Validated
Probab=45.93 E-value=1.2e+02 Score=32.76 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=52.0
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|. |..|..+++.|.+. |..|+++...+ ++.+.+.+ .+ +.++.+|.++.+.++++-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~--~~l~~~~~--------~~--~~~~~~Dv~~~~~~~~~~~~ 67 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ---GYTVYGAARRV--DKMEDLAS--------LG--VHPLSLDVTDEASIKAAVDT 67 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHh--------CC--CeEEEeeCCCHHHHHHHHHH
Confidence 357999997 55699999999763 88888887643 33333332 12 456899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.++.
T Consensus 68 ~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 68 IIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 2367888887764
No 347
>PRK06949 short chain dehydrogenase; Provisional
Probab=45.72 E-value=1.2e+02 Score=32.16 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|. |..|..+++.|.+. |..|+++...+ ++.+.+.+. ++ . .+..+.++.+|.++++.++++-
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~---G~~Vi~~~r~~--~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA---GAKVVLASRRV--ERLKELRAE-IE--A-EGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-HH--h-cCCcEEEEEecCCCHHHHHHHHHH
Confidence 478999998 56699999999764 77888887543 333333210 00 0 1224667899999988776532
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 80 ~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 80 AETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2357888887764
No 348
>PRK07904 short chain dehydrogenase; Provisional
Probab=45.60 E-value=50 Score=35.41 Aligned_cols=81 Identities=7% Similarity=-0.036 Sum_probs=50.1
Q ss_pred CCCeEEEEccccc-HHHHHHHHHHhcCCCCeEEEEccCChH---HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc
Q 002491 641 YPEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEK---EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES 716 (916)
Q Consensus 641 ~~~hilI~Gwg~~-~~~li~~L~~~~~~g~~v~II~~~p~~---er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~ 716 (916)
..++++|.|.++. |..++++|.+. .|..|+++...++. +..+.+.+ ..+..+.++.+|.+|++.+++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~r~~~~~~~~~~~~l~~-------~~~~~v~~~~~D~~~~~~~~~ 77 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAALPDDPRRDAAVAQMKA-------AGASSVEVIDFDALDTDSHPK 77 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEeCCcchhHHHHHHHHHh-------cCCCceEEEEecCCChHHHHH
Confidence 4568999999654 99999998764 14788888654332 11222222 112247788999998775432
Q ss_pred C-----CCCCccEEEEecC
Q 002491 717 L-----PLETFDSILILAD 730 (916)
Q Consensus 717 a-----~I~~adavIilad 730 (916)
+ .-...|.+|..+.
T Consensus 78 ~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHhcCCCCEEEEeee
Confidence 1 1136887776554
No 349
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=45.36 E-value=78 Score=30.58 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCC-eEEEEccC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV 677 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~ 677 (916)
..+|+|+|-|..|..+++.|... |. .++++|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHh---CCCceeecCCc
Confidence 36899999999999999999876 54 79998864
No 350
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=45.33 E-value=83 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002491 160 YYMLIINCILCVCYAIHLRDRVEKLEEENS 189 (916)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (916)
..+|+++|.++|.+-+-|-+||..|+....
T Consensus 137 IAVLfLICT~LfLSTVVLANKVS~LKrskQ 166 (227)
T PF05399_consen 137 IAVLFLICTLLFLSTVVLANKVSSLKRSKQ 166 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777789999999987653
No 351
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.25 E-value=1.7e+02 Score=32.87 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.5
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc--ccCC-ccEEEEEECCCCHHHHhccCccc
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMG-TSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~--~~~~-~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
+|.|+|.|..+..++..|...+ -...++|+|.+++..+....++.+ .+.. .++.+..| +.++ +.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~----~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~~-----~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG----LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYDD-----CAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHHH-----hCC
Confidence 4789999998888877766422 235788999876544333322221 1221 23433333 3444 457
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
||.||+.+..
T Consensus 69 aDivvitaG~ 78 (307)
T cd05290 69 ADIIVITAGP 78 (307)
T ss_pred CCEEEECCCC
Confidence 8888888765
No 352
>PRK06953 short chain dehydrogenase; Provisional
Probab=45.22 E-value=99 Score=32.12 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=48.0
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc--Cc--
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV-- 458 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--gi-- 458 (916)
.++|.|.+. .+..++++|.. .+..|++++++++..+.... .++.++.+|.++.+.++++ .+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~------~G~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRA------DGWRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHh------CCCEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcC
Confidence 578888654 57778888864 24678888888766554321 2356789999999888774 12
Q ss_pred ccccEEEEecC
Q 002491 459 SKARAIIVLAS 469 (916)
Q Consensus 459 ~~A~aVIiltd 469 (916)
.+.+.+|-+..
T Consensus 69 ~~~d~vi~~ag 79 (222)
T PRK06953 69 EALDAAVYVAG 79 (222)
T ss_pred CCCCEEEECCC
Confidence 24677766554
No 353
>PLN02823 spermine synthase
Probab=44.73 E-value=69 Score=36.53 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=50.9
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc---ccCCccEEEEEECCCCHHHHhccCc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---DFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~---~~~~~~V~~i~GD~t~~e~L~rAgi 458 (916)
..+++|+|.|. +.+++++.... ....|+++|.|++.++...+-+.. .+.+.++.++.||+.+. |++. -
T Consensus 104 pk~VLiiGgG~--G~~~re~l~~~----~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~--L~~~-~ 174 (336)
T PLN02823 104 PKTVFIMGGGE--GSTAREVLRHK----TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE--LEKR-D 174 (336)
T ss_pred CCEEEEECCCc--hHHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH--HhhC-C
Confidence 45899999995 55667766422 235789999999877755332211 12345788888887753 4332 3
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
++.|.||+-..|
T Consensus 175 ~~yDvIi~D~~d 186 (336)
T PLN02823 175 EKFDVIIGDLAD 186 (336)
T ss_pred CCccEEEecCCC
Confidence 567787776543
No 354
>PRK08628 short chain dehydrogenase; Provisional
Probab=44.72 E-value=74 Score=33.78 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=48.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc--
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi-- 458 (916)
...++|.|.+. .+..++++|... +..|+++.++++.. ...+... ..+.++.++.+|.++++.++++=-
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~------G~~v~~~~r~~~~~-~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEE------GAIPVIFGRSAPDD-EFAEELR--ALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc------CCcEEEEcCChhhH-HHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788888764 577888888753 45677777766543 2222211 123457788899999888765321
Q ss_pred ----ccccEEEEecC
Q 002491 459 ----SKARAIIVLAS 469 (916)
Q Consensus 459 ----~~A~aVIiltd 469 (916)
...+.+|-++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 24566666654
No 355
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=44.68 E-value=88 Score=33.24 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=49.1
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
.+.++|.|.+. .+..++++|... +..|++++++.+..+....... ..+.++.++..|.++.+.++++-
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~------G~~vv~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA------GASVVVSDINADAANHVVDEIQ--QLGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45677788765 467788888752 4667778777665554433221 11335777888988888776531
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
..+-+.+|-++.
T Consensus 83 ~~~~~~~d~li~~ag 97 (255)
T PRK06113 83 LSKLGKVDILVNNAG 97 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 123466666553
No 356
>PRK06125 short chain dehydrogenase; Provisional
Probab=44.42 E-value=88 Score=33.33 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=49.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--cc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VS 459 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i~ 459 (916)
..++|.|.+. .+..++++|.+. |..|++++++++..+...+++. ...+.++.++..|.++++.++++- ..
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAE------GCHLHLVARDADALEALAADLR-AAHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-hhcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 5778888754 577788888752 4678888888766555433221 111345778888888887765431 23
Q ss_pred cccEEEEec
Q 002491 460 KARAIIVLA 468 (916)
Q Consensus 460 ~A~aVIilt 468 (916)
..+.+|...
T Consensus 81 ~id~lv~~a 89 (259)
T PRK06125 81 DIDILVNNA 89 (259)
T ss_pred CCCEEEECC
Confidence 456665544
No 357
>PRK07060 short chain dehydrogenase; Provisional
Probab=44.38 E-value=1.3e+02 Score=31.55 Aligned_cols=76 Identities=11% Similarity=0.006 Sum_probs=51.2
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|. |..|..+++.|.+. |.+|+++...+ +..+.+.+. + + ..++.+|.++.+.++++-
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~---g~~V~~~~r~~--~~~~~~~~~------~-~--~~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR---GARVVAAARNA--AALDRLAGE------T-G--CEPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH------h-C--CeEEEecCCCHHHHHHHHHH
Confidence 468999998 56799999999764 77888887543 333333321 1 1 345789999988765531
Q ss_pred CCCccEEEEecCC
Q 002491 719 LETFDSILILADE 731 (916)
Q Consensus 719 I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 75 ~~~~d~vi~~ag~ 87 (245)
T PRK07060 75 AGAFDGLVNCAGI 87 (245)
T ss_pred hCCCCEEEECCCC
Confidence 3457888877754
No 358
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=44.37 E-value=3e+02 Score=31.16 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=71.3
Q ss_pred eEEEEecc--hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh-cccCCccEEEEEECCCCHHHHh-ccCc-
Q 002491 384 HILILGWS--DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FDFMGTSVICRSGSPLILADLK-KVSV- 458 (916)
Q Consensus 384 HIII~G~g--~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~-~~~~~~~V~~i~GD~t~~e~L~-rAgi- 458 (916)
.+|=+|.| +++..+++.|... +....++-+|-+.+.++...+++. .++....+.-+.||.++.-.+. ....
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~----~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQ----KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhc----CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 34435555 4678888888632 224678889999888888877665 4455566777999998876533 2222
Q ss_pred ccccEEEEecCC-CCCChhhHHHHHHHHHHhhhcCCCCceEEEEecCCCCHHHHHHc
Q 002491 459 SKARAIIVLASD-ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLV 514 (916)
Q Consensus 459 ~~A~aVIiltdd-~~~~~sD~~Ni~~~Lsar~l~p~~~~~IIArv~d~e~~~~l~~~ 514 (916)
...+.++-+.+. +|-...++..++.-+.-..+.| ....+.-+.-.+..+.+..+
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~--~d~lLiG~D~~k~~~~l~~A 209 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP--SDSFLIGLDGCKDPDKVLRA 209 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC--CCEEEEecCCCCCHHHHHHH
Confidence 334555555544 3433333333333222214666 34466555444555554443
No 359
>PRK05326 potassium/proton antiporter; Reviewed
Probab=44.22 E-value=24 Score=42.96 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=33.2
Q ss_pred CccHHHHHHHhccCCcEEEEEEeCCCCcEEECCCCCCCCCeecCCCEEEEEecC
Q 002491 862 EISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 862 ~ltf~dl~~~~r~~g~ilIGi~~~~g~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
+.+.+|+. ..++..++++.|++ +. ++|++ ++++++||.+++++.+
T Consensus 429 G~~l~el~---lp~~~~i~~v~R~g--~~-~~p~~---~t~L~~GD~l~l~~~~ 473 (562)
T PRK05326 429 GKALRDLR---LPRGALIALIIRDG--KL-LVPTG---STRLKAGDVLLVLGPE 473 (562)
T ss_pred CCCHHHcC---CCCCcEEEEEEECC--EE-eCCCC---CCeECCCCEEEEEECH
Confidence 44555552 24589999998854 33 67876 8999999999999864
No 360
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=44.21 E-value=61 Score=36.04 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=50.6
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccC--ChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-CC
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEV--PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 719 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~--p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-~I 719 (916)
+++|.|. |-.|..+++.|.+. |.+|++++.. ....+...+.+ +.+..+.++.+|.+|.+.+.++ .-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN---GHDVVILDNLCNSKRSVLPVIER-------LGGKHPTFVEGDIRNEALLTEILHD 71 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC---CCeEEEEecCCCchHhHHHHHHH-------hcCCCceEEEccCCCHHHHHHHHhc
Confidence 5899996 77899999999763 7888888532 11111111211 1222356789999999887664 22
Q ss_pred CCccEEEEecCC
Q 002491 720 ETFDSILILADE 731 (916)
Q Consensus 720 ~~adavIilad~ 731 (916)
..+|.||-++..
T Consensus 72 ~~~d~vvh~a~~ 83 (338)
T PRK10675 72 HAIDTVIHFAGL 83 (338)
T ss_pred CCCCEEEECCcc
Confidence 368999988753
No 361
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=44.20 E-value=50 Score=41.53 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhhhhccCCC-CCcCCccCceeeeeehhhhHHHHHHHHHHHHHHHHH
Q 002491 312 SSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (916)
Q Consensus 312 ~s~~dA~y~~~~titTvGyg-d~~~t~~gRi~~v~lil~Gi~ifa~~ig~it~~i~~ 367 (916)
.++..|+|..|..+..---- +.|.++.+|+.+.+|.++++++++.-++-++.++.+
T Consensus 608 FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred eehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999888666421111 124578899999999999999998877777665543
No 362
>PRK07832 short chain dehydrogenase; Provisional
Probab=44.17 E-value=81 Score=34.01 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=46.5
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC-----
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg----- 457 (916)
.++|.|.+. .+..++++|.+. |..|++++++++..+...++... .....+.++.+|.++++.++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~------G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQ------GAELFLTDRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVAAFAADIHA 74 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHHHHHHHHHH
Confidence 588999765 567778887642 46788888877665554333211 11122445678888877665421
Q ss_pred -cccccEEEEecC
Q 002491 458 -VSKARAIIVLAS 469 (916)
Q Consensus 458 -i~~A~aVIiltd 469 (916)
....|.+|..+.
T Consensus 75 ~~~~id~lv~~ag 87 (272)
T PRK07832 75 AHGSMDVVMNIAG 87 (272)
T ss_pred hcCCCCEEEECCC
Confidence 124566665553
No 363
>PRK07062 short chain dehydrogenase; Provisional
Probab=44.07 E-value=2.2e+02 Score=30.36 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=52.6
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.+.++|.|.++ .|..+++.|.+. |..|+++...++ +.+.+.+. + ....++..+.++.+|.++++.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~-~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA---GASVAICGRDEE--RLASAEAR-L-REKFPGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHH--HHHHHHHH-H-HhhCCCceEEEEEecCCCHHHHHHHHHH
Confidence 46789999865 599999999764 788888875432 22221110 0 0012334577889999999877542
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 81 ~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 23467888877653
No 364
>PLN00198 anthocyanidin reductase; Provisional
Probab=43.91 E-value=89 Score=34.93 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=48.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
...|+|.|.+. .+..++++|... ++.|+++..+.+............ ...++.++.||.++.+.+.++ +++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~-~~~ 80 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK------GYAVNTTVRDPENQKKIAHLRALQ-ELGDLKIFGADLTDEESFEAP-IAG 80 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC------CCEEEEEECCCCCHHHHHHHHhcC-CCCceEEEEcCCCChHHHHHH-Hhc
Confidence 45799999665 577788888753 355654444432221110000000 012578899999999888764 346
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
+|.||-++..
T Consensus 81 ~d~vih~A~~ 90 (338)
T PLN00198 81 CDLVFHVATP 90 (338)
T ss_pred CCEEEEeCCC
Confidence 8999988764
No 365
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=43.67 E-value=1.3e+02 Score=31.85 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=51.8
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+ ..|..+++.|.+. |..|++++..++ +.+.+.+. + .. .+..+.++.+|.+|++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~-i--~~-~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA---GARVVLSARKAE--ELEEAAAH-L--EA-LGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHH-H--Hh-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 4689999974 4599999999764 778888876432 22222110 0 00 1234667899999998884411
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2357888888764
No 366
>PRK06482 short chain dehydrogenase; Provisional
Probab=43.58 E-value=1.8e+02 Score=31.24 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=52.5
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 717 (916)
++++|.|.+ ..|..++++|.+. |..++++...+ ++.+.+.+. .+ ..+.++++|.++.+.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~---g~~v~~~~r~~--~~~~~~~~~------~~-~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR---GDRVAATVRRP--DALDDLKAR------YG-DRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHh------cc-CceEEEEccCCCHHHHHHHHHHH
Confidence 579999984 5699999999764 77888877532 344443321 11 1356789999999877653
Q ss_pred --CCCCccEEEEecCC
Q 002491 718 --PLETFDSILILADE 731 (916)
Q Consensus 718 --~I~~adavIilad~ 731 (916)
.....|.+|-++..
T Consensus 71 ~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHcCCCCEEEECCCC
Confidence 23467888888764
No 367
>PRK06172 short chain dehydrogenase; Provisional
Probab=43.45 E-value=73 Score=33.72 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=51.5
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~--er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 717 (916)
.++++|.|.+ ..|..+++.|.+. |..|++++..+++ +..+.+.+ .+..+.++.+|.++++.++++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE---GAKVVVADRDAAGGEETVALIRE--------AGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHh--------cCCceEEEEcCCCCHHHHHHHH
Confidence 4689999985 4599999999764 7888888864321 11122221 123467889999999877653
Q ss_pred -----CCCCccEEEEecCC
Q 002491 718 -----PLETFDSILILADE 731 (916)
Q Consensus 718 -----~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 76 ~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 76 EQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 11345888877653
No 368
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.43 E-value=1.9e+02 Score=30.19 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+. .|..+++.|.+. |..|+++...+. +.+.+.+. + .. .+..+.++.+|.++++.++++=
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~---G~~Vi~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE---GVNVGLLARTEE--NLKAVAEE-V--EA-YGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHH-H--HH-hCCeEEEEECCCCCHHHHHHHHHH
Confidence 46799999864 589999999754 788888875432 22222110 0 00 1234677899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 78 LKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHcCCccEEEEcCcc
Confidence 2367888877653
No 369
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=43.41 E-value=80 Score=35.70 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=65.4
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCCh-----HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHh
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-----KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 715 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~-----~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~ 715 (916)
..||||.|+ |=.|...+-+|.+ .|..++++|+--+ -.|.+.+.. +.-.|.|.+||-.|.+.|+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~---~gy~v~~vDNl~n~~~~sl~r~~~l~~--------~~~~v~f~~~Dl~D~~~L~ 70 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLK---RGYGVVIVDNLNNSYLESLKRVRQLLG--------EGKSVFFVEGDLNDAEALE 70 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHh---CCCcEEEEecccccchhHHHHHHHhcC--------CCCceEEEEeccCCHHHHH
Confidence 468999887 5568888888875 4889999986311 123333322 2345889999999999999
Q ss_pred c-CCCCCccEEEEecCCC-CcC---ccccCcHHHHHHHHHH
Q 002491 716 S-LPLETFDSILILADES-LED---SIVHSDSRSLATLLLI 751 (916)
Q Consensus 716 ~-a~I~~adavIilad~~-~~~---~~~~~Da~~l~t~L~~ 751 (916)
+ -....+|+||=++.+. ..+ .+..=+..|+...|.+
T Consensus 71 kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnl 111 (343)
T KOG1371|consen 71 KLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNL 111 (343)
T ss_pred HHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHH
Confidence 8 4567799999988753 111 2334455555544443
No 370
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=43.22 E-value=61 Score=37.96 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=53.3
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|+|+.+.-+++.|...+ -..|+++.+..++.+.+..++ + |.+...+.|.. .+..|
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g-----~~~i~IaNRT~erA~~La~~~-------~-----~~~~~l~el~~-~l~~~ 239 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKG-----VKKITIANRTLERAEELAKKL-------G-----AEAVALEELLE-ALAEA 239 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCC-----CCEEEEEcCCHHHHHHHHHHh-------C-----CeeecHHHHHH-hhhhC
Confidence 468999999998888888887532 378889999998887776543 1 44555555443 47799
Q ss_pred cEEEEecCCC
Q 002491 462 RAIIVLASDE 471 (916)
Q Consensus 462 ~aVIiltdd~ 471 (916)
|.||..|...
T Consensus 240 DvVissTsa~ 249 (414)
T COG0373 240 DVVISSTSAP 249 (414)
T ss_pred CEEEEecCCC
Confidence 9999998763
No 371
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=43.12 E-value=1.1e+02 Score=29.80 Aligned_cols=74 Identities=20% Similarity=0.140 Sum_probs=42.7
Q ss_pred EEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhccc---CCccEEEEEECCCCHHHHhccCcccc
Q 002491 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF---MGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 385 III~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~---~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
|.|+|.|..+..++..|... ++.|.++.+.+ ..+.. ++..... .+.......-....+ ....+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP-RLEAI-KEQGLTITGPDGDETVQPPIVISAP----SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH-HHHHH-HHHCEEEEETTEEEEEEEEEEESSH----GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc-cHHhh-hheeEEEEecccceecccccccCcc----hhccCCC
Confidence 68999999888888888653 57899998877 55543 2211111 111111111111122 4467789
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.||+++..
T Consensus 69 D~viv~vKa 77 (151)
T PF02558_consen 69 DLVIVAVKA 77 (151)
T ss_dssp SEEEE-SSG
T ss_pred cEEEEEecc
Confidence 999999853
No 372
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.11 E-value=1.3e+02 Score=31.64 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=50.0
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|.+ ..|..+++.|.+. |..++++..... +..+.+.+. . .-.+..+.++.+|.++++.++++=
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~---g~~v~~~~~r~~-~~~~~~~~~---~-~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEE---GYDIAVNYARSR-KAAEETAEE---I-EALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCCCH-HHHHHHHHH---H-HhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 579999985 4599999999864 777776532211 222222110 0 001234678899999998776531
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1357888887754
No 373
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=42.93 E-value=1.2e+02 Score=35.56 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhhhcCcccccccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCC
Q 002491 369 VDSLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (916)
Q Consensus 369 l~~lr~G~~~~~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t 448 (916)
++.+.+..........++|+|+|..+..++..+... |..|+++|.++.+.+.+.. ++.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d~~R~~~A~~----------------~G~ 246 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVDPICALQAAM----------------EGY 246 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEECChhhHHHHHh----------------cCC
Q ss_pred CHHHHhccCcccccEEEEecCCCCCChhhHHHHHHHHHHhhhcCCCCceEE
Q 002491 449 ILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVV 499 (916)
Q Consensus 449 ~~e~L~rAgi~~A~aVIiltdd~~~~~sD~~Ni~~~Lsar~l~p~~~~~II 499 (916)
+.-.+.++ +..||.||.++.. ..+...-.+..+.+ ...++
T Consensus 247 ~~~~~~e~-v~~aDVVI~atG~--------~~~i~~~~l~~mk~--Ggilv 286 (413)
T cd00401 247 EVMTMEEA-VKEGDIFVTTTGN--------KDIITGEHFEQMKD--GAIVC 286 (413)
T ss_pred EEccHHHH-HcCCCEEEECCCC--------HHHHHHHHHhcCCC--CcEEE
No 374
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=42.84 E-value=52 Score=39.07 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=29.7
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p 678 (916)
..++++|+|.|..|...+..|.+. |..+++++..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~---G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA---GVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEecCC
Confidence 567999999999999999999764 78899998653
No 375
>PRK12827 short chain dehydrogenase; Provisional
Probab=42.74 E-value=91 Score=32.63 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=49.2
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcC----ChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER----DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~----d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
.+.++|.|.+. .+..++++|... ++.|++++. +++..+....+. ...+.++.++.+|.++++.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD------GADVIVLDIHPMRGRAEADAVAAGI--EAAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCeEEEEcCcccccHHHHHHHHHHH--HhcCCcEEEEEccCCCHHHHHHH
Confidence 35789999765 467778888753 456766543 333333332221 11234678899999999888764
Q ss_pred C------cccccEEEEecC
Q 002491 457 S------VSKARAIIVLAS 469 (916)
Q Consensus 457 g------i~~A~aVIiltd 469 (916)
- ....+.+|-.+.
T Consensus 78 ~~~~~~~~~~~d~vi~~ag 96 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAG 96 (249)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 2 135677777664
No 376
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=42.68 E-value=1.5e+02 Score=30.80 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|.+ ..|..+++.|.+. |..++++...+.+ +.+.+.+. + .-.+..+.++.+|.++.+.+.++-
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~---G~~v~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ---GANVVINYASSEA-GAEALVAE-I---GALGGKALAVQGDVSDAESVERAVDE 76 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCchh-HHHHHHHH-H---HhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3579999984 5589999999764 7788777654332 22222110 0 001234678899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 77 AKAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2357888887764
No 377
>PLN02823 spermine synthase
Probab=42.64 E-value=97 Score=35.34 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=48.7
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC-CCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG-LDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~g-l~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
.+++++|+|.|.-+ +++++.++ .+...++++|-++ +..+...+.- .....+.+.++.++.||+. +.|++. -
T Consensus 103 ~pk~VLiiGgG~G~--~~re~l~~-~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~-~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGS--TAREVLRH-KTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKR-D 174 (336)
T ss_pred CCCEEEEECCCchH--HHHHHHhC-CCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhH--HHHhhC-C
Confidence 46799999998553 34555543 2346799998754 3333332211 0011234567888999976 456543 4
Q ss_pred CCccEEEEec
Q 002491 720 ETFDSILILA 729 (916)
Q Consensus 720 ~~adavIila 729 (916)
+++|.|++-.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 7899888754
No 378
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=42.63 E-value=2.5e+02 Score=31.13 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=44.6
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHH-HhccCccccc
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD-LKKVSVSKAR 462 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~-L~rAgi~~A~ 462 (916)
+|-|+|.|..+..+++.|... ++.|++.|++++.++...+ .++. . ..+.+. .+++ +.|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~~~~~~~~--------~g~~---~-~~s~~~~~~~~--~~ad 61 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQEAVDVAGK--------LGIT---A-RHSLEELVSKL--EAPR 61 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHH--------CCCe---e-cCCHHHHHHhC--CCCC
Confidence 578999999999999998753 4678889999877765422 1111 1 123333 3333 3578
Q ss_pred EEEEecCC
Q 002491 463 AIIVLASD 470 (916)
Q Consensus 463 aVIiltdd 470 (916)
.||++..+
T Consensus 62 vVi~~vp~ 69 (299)
T PRK12490 62 TIWVMVPA 69 (299)
T ss_pred EEEEEecC
Confidence 99998876
No 379
>PRK07677 short chain dehydrogenase; Provisional
Probab=42.49 E-value=2e+02 Score=30.48 Aligned_cols=79 Identities=8% Similarity=0.085 Sum_probs=50.2
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
+.++|.|.++ .|..+++.|.+. |..|++++..+ ++.+.+.+. + ... +..+.++.+|.++++.++++-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~---G~~Vi~~~r~~--~~~~~~~~~-~--~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE---GANVVITGRTK--EKLEEAKLE-I--EQF-PGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hhc-CCcEEEEEecCCCHHHHHHHHHHH
Confidence 4688999865 599999999864 78888887543 222222210 0 001 124678899999988776521
Q ss_pred ---CCCccEEEEecC
Q 002491 719 ---LETFDSILILAD 730 (916)
Q Consensus 719 ---I~~adavIilad 730 (916)
....|.+|-.+.
T Consensus 73 ~~~~~~id~lI~~ag 87 (252)
T PRK07677 73 DEKFGRIDALINNAA 87 (252)
T ss_pred HHHhCCccEEEECCC
Confidence 235688887765
No 380
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=42.26 E-value=1.1e+02 Score=30.67 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=32.5
Q ss_pred CeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcC
Q 002491 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDG 689 (916)
Q Consensus 643 ~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~ 689 (916)
.+|-|+|-|+.|..+++.|.+. |.++++.+.. .++.+.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d~~--~~~~~~~~~~ 43 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYDRS--PEKAEALAEA 43 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT---TTEEEEEESS--HHHHHHHHHT
T ss_pred CEEEEEchHHHHHHHHHHHHhc---CCeEEeeccc--hhhhhhhHHh
Confidence 4789999999999999999764 8999999854 4677777663
No 381
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=42.24 E-value=85 Score=30.56 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.2
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCC-eEEEEccC
Q 002491 644 KILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV 677 (916)
Q Consensus 644 hilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~ 677 (916)
||+|+|-|..|..+++.|... |. .+++++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCC
Confidence 689999999999999999864 54 78998754
No 382
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=42.10 E-value=1.4e+02 Score=31.68 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=52.1
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|.+ ..|..+++.|.+. |..|++++... ++.+.+.+ .+ +..+.++.+|.++++.++++-
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~---G~~v~~~~r~~--~~~~~~~~------~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE---GARVVIADIKP--ARARLAAL------EI-GPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEcCCH--HHHHHHHH------Hh-CCceEEEEccCCCHHHHHHHHHH
Confidence 3579999984 5599999999864 88888887543 33333332 11 123667899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 74 AVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 2357888877653
No 383
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=42.10 E-value=37 Score=37.85 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=46.5
Q ss_pred EEEEecc-hhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCcc----EEEEEECCCCHHHHhcc-Cc
Q 002491 385 ILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTS----VICRSGSPLILADLKKV-SV 458 (916)
Q Consensus 385 III~G~g-~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~----V~~i~GD~t~~e~L~rA-gi 458 (916)
|+|.|.+ ..|.+++++|...+ ...+++.|.++..+-.+..++...+.+.+ +..+.||..|.+.|.++ .-
T Consensus 1 VLVTGa~GSIGseL~rql~~~~-----p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYG-----PKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEccccHHHHHHHHHHHhcC-----CCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence 5778765 46889999998643 35788999998766555443311112222 34568999999888876 33
Q ss_pred ccccEEEEecC
Q 002491 459 SKARAIIVLAS 469 (916)
Q Consensus 459 ~~A~aVIiltd 469 (916)
.+.|.|+=.+.
T Consensus 76 ~~pdiVfHaAA 86 (293)
T PF02719_consen 76 YKPDIVFHAAA 86 (293)
T ss_dssp -T-SEEEE---
T ss_pred cCCCEEEEChh
Confidence 36777776554
No 384
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.01 E-value=67 Score=37.70 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=48.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~-e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~ 460 (916)
...++|+|.|..+..+++.|.. .|..|+++|.+. +.++...+++ ...++.++.++..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~------~G~~V~~~d~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK------LGAKVILTDEKEEDQLKEALEEL----GELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCchHHHHHHHHHH----HhcCCEEEeCCcchh------Hhhc
Confidence 4689999999988888888865 357899998864 3343322221 122466778887762 2356
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
+|.||..++.
T Consensus 69 ~d~vv~~~g~ 78 (450)
T PRK14106 69 VDLVVVSPGV 78 (450)
T ss_pred CCEEEECCCC
Confidence 8888887754
No 385
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.91 E-value=1.1e+02 Score=31.35 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=25.5
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
||+|+|.|-.+..+++.|.... -..++++|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-----vg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-----VGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-----CCeEEEEeCCE
Confidence 6899999999999999987643 13577777775
No 386
>PRK12746 short chain dehydrogenase; Provisional
Probab=41.85 E-value=89 Score=33.01 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=50.1
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEE-EcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVL-id~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
..++|.|.+. .+..++++|.+. +..|++ ..++.+..+....... ..+..+.++.+|.++++.+.++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~------G~~v~i~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~i~~~~~~~ 78 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLAND------GALVAIHYGRNKQAADETIREIE--SNGGKAFLIEADLNSIDGVKKLVEQL 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHH--hcCCcEEEEEcCcCCHHHHHHHHHHH
Confidence 5889999765 577778888652 455655 4566655554433221 1134578899999999987664
Q ss_pred --------CcccccEEEEecC
Q 002491 457 --------SVSKARAIIVLAS 469 (916)
Q Consensus 457 --------gi~~A~aVIiltd 469 (916)
+..+.|.+|-+..
T Consensus 79 ~~~~~~~~~~~~id~vi~~ag 99 (254)
T PRK12746 79 KNELQIRVGTSEIDILVNNAG 99 (254)
T ss_pred HHHhccccCCCCccEEEECCC
Confidence 1135677776664
No 387
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=41.72 E-value=39 Score=34.51 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCCh
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPE 679 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~ 679 (916)
..+++.|+|+|++|..+++.|..+ |..|..++..+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~ 70 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPK 70 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCC
Confidence 467999999999999999999976 889999997654
No 388
>PRK06198 short chain dehydrogenase; Provisional
Probab=41.71 E-value=97 Score=32.87 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCce-EEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVI-VVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~i-VVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-- 457 (916)
...++|.|.+. .+..++++|... +.. |++++++++..+.....+ ...+.++.++.+|.++++.+.++=
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~------G~~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER------GAAGLVICGRNAEKGEAQAAEL--EALGAKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHHH--HhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 35688999765 567777888643 344 788888766554433222 112345778889999988776541
Q ss_pred ----cccccEEEEecC
Q 002491 458 ----VSKARAIIVLAS 469 (916)
Q Consensus 458 ----i~~A~aVIiltd 469 (916)
....+.+|-+..
T Consensus 78 ~~~~~g~id~li~~ag 93 (260)
T PRK06198 78 ADEAFGRLDALVNAAG 93 (260)
T ss_pred HHHHhCCCCEEEECCC
Confidence 124677776654
No 389
>PRK09135 pteridine reductase; Provisional
Probab=41.66 E-value=1.6e+02 Score=30.68 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=52.1
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+ ..|..+++.|.+. |..++++..... +..+.+.+ .+ .......+.++.+|.++++.+.++-
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~---g~~v~~~~r~~~-~~~~~~~~-~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA---GYRVAIHYHRSA-AEADALAA-EL--NALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCCCH-HHHHHHHH-HH--HhhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3689999985 4599999999864 788888875322 22222211 00 0011123667899999998776532
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.++-.+..
T Consensus 79 ~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 79 CVAAFGRLDALVNNASS 95 (249)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2357888877763
No 390
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=41.64 E-value=58 Score=36.55 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=53.3
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCCh---HHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE---KEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~---~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
++++|.|. |-.|..+++.|.+. |.+|+.++..+. .++.+.+.+.. ....+..+.++.||.+|.+.++++=
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~l~~~~ 74 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK---GYEVHGLIRRSSSFNTQRIEHIYEDP---HNVNKARMKLHYGDLTDSSNLRRII 74 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC---CCEEEEEecCCcccchhhhhhhhhcc---ccccccceeEEEeccCCHHHHHHHH
Confidence 47899998 56799999999864 788888875432 12322221100 0001224678899999998887642
Q ss_pred C-CCccEEEEecCC
Q 002491 719 L-ETFDSILILADE 731 (916)
Q Consensus 719 I-~~adavIilad~ 731 (916)
- ...|.|+=++..
T Consensus 75 ~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 75 DEIKPTEIYNLAAQ 88 (343)
T ss_pred HhCCCCEEEECCcc
Confidence 2 147888888764
No 391
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=41.63 E-value=58 Score=36.17 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p 678 (916)
.++++|+|+|+.|..+++.|..+ |.+|++++..+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~---G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL---GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 46899999999999999999865 77899988653
No 392
>PRK08226 short chain dehydrogenase; Provisional
Probab=41.61 E-value=88 Score=33.31 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=42.0
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA 456 (916)
..+++|.|.+. .+..+++.|... |..|++++++.+. +....+.. ..+.++.++.+|.++++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~------G~~Vv~~~r~~~~-~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH------GANLILLDISPEI-EKLADELC--GRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC------CCEEEEecCCHHH-HHHHHHHH--HhCCceEEEECCCCCHHHHHHH
Confidence 46788888765 577778888652 5678888887642 22222111 1234567788888888877654
No 393
>PRK07041 short chain dehydrogenase; Provisional
Probab=41.47 E-value=76 Score=32.98 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=49.2
Q ss_pred EEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--ccccc
Q 002491 386 LILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VSKAR 462 (916)
Q Consensus 386 II~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i~~A~ 462 (916)
+|.|.+. .+..++++|.+. +..|+++.++++..+....... .+.++.++.+|.++++.++++- +.+.+
T Consensus 1 lItGas~~iG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE------GARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4667665 467788888752 4678888888766655433221 1345778899999999887642 23456
Q ss_pred EEEEecC
Q 002491 463 AIIVLAS 469 (916)
Q Consensus 463 aVIiltd 469 (916)
.+|..+.
T Consensus 72 ~li~~ag 78 (230)
T PRK07041 72 HVVITAA 78 (230)
T ss_pred EEEECCC
Confidence 7766654
No 394
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=41.43 E-value=79 Score=35.55 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=49.0
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcC-CHhHHhcCCCCC
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAV-IRRHLESLPLET 721 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t-~~~~L~~a~I~~ 721 (916)
+|+|.|. |-.|..+++.|.+. .|.+|+.++..+ ++...+. +...+.++.||.+ +.+.+.++ ++.
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~r~~--~~~~~~~---------~~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILET--TDWEVYGMDMQT--DRLGDLV---------NHPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhC--CCCeEEEEeCcH--HHHHHhc---------cCCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 6999998 88899999999753 257888887422 2222221 1123678899997 66666654 457
Q ss_pred ccEEEEecC
Q 002491 722 FDSILILAD 730 (916)
Q Consensus 722 adavIilad 730 (916)
+|.||=++.
T Consensus 69 ~d~ViH~aa 77 (347)
T PRK11908 69 CDVILPLVA 77 (347)
T ss_pred CCEEEECcc
Confidence 898885543
No 395
>PLN00198 anthocyanidin reductase; Provisional
Probab=41.37 E-value=96 Score=34.67 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=51.0
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~-er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
.++++|.|.. -.|..+++.|.+. |.+|+++...+.. .....+.. + ...+ .+.+++||.++++.+.++ +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~--~--~~~~--~~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK---GYAVNTTVRDPENQKKIAHLRA--L--QELG--DLKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC---CCEEEEEECCCCCHHHHHHHHh--c--CCCC--ceEEEEcCCCChHHHHHH-H
Confidence 4679999974 5699999999864 7777655432211 11111110 0 0111 366789999999887764 4
Q ss_pred CCccEEEEecCC
Q 002491 720 ETFDSILILADE 731 (916)
Q Consensus 720 ~~adavIilad~ 731 (916)
+++|.|+-++..
T Consensus 79 ~~~d~vih~A~~ 90 (338)
T PLN00198 79 AGCDLVFHVATP 90 (338)
T ss_pred hcCCEEEEeCCC
Confidence 468999988864
No 396
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.24 E-value=1e+02 Score=32.52 Aligned_cols=78 Identities=22% Similarity=0.160 Sum_probs=46.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~-e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..++|+|.+. .+..++++|... ++.|+++.++. +..+....++. ..+.++.++.+|.++++.++++-
T Consensus 7 k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQKAPRANKVVAEIE--AAGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCchHhHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4688999854 577788888642 46677666543 23332222111 11345778899999998876431
Q ss_pred ---cccccEEEEec
Q 002491 458 ---VSKARAIIVLA 468 (916)
Q Consensus 458 ---i~~A~aVIilt 468 (916)
....|.+|..+
T Consensus 79 ~~~~~~~d~vi~~a 92 (248)
T PRK07806 79 REEFGGLDALVLNA 92 (248)
T ss_pred HHhCCCCcEEEECC
Confidence 12456666555
No 397
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.20 E-value=67 Score=33.75 Aligned_cols=80 Identities=9% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|. |..|..+++.|.+. |..|+++...+. +.+.+.+. + .. +..+.++++|.++++.++++
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~--~~--~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE---GARVVVTDRNEE--AAERVAAE-I--LA--GGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHHH-H--hc--CCeEEEEECCCCCHHHHHHHHHH
Confidence 357999997 45699999999764 788888886542 33322210 0 00 23467889999999988653
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 75 ~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 75 ALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12467988887754
No 398
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.06 E-value=95 Score=33.35 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=36.5
Q ss_pred ceEEEEecc---hhHHHHHHHHHHhcccCCCCceEEEEcCC---hHHHHHHHHhhhcccCCccEEEEEECCCCHHHHh
Q 002491 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERD---KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLK 454 (916)
Q Consensus 383 ~HIII~G~g---~~~~~ll~eL~~~~~~~~~~~iVVLid~d---~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~ 454 (916)
..++|.|.+ ..+..++++|.+. |..|+++.++ ++.+++..++. .+.++.++..|.++++..+
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~------G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~ 75 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNA------GAKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEIT 75 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC------CCEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHH
Confidence 478899974 5788899999753 4567777543 33444332211 1234555566666665543
No 399
>PLN02686 cinnamoyl-CoA reductase
Probab=41.05 E-value=76 Score=36.32 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=48.5
Q ss_pred ccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh-cc---cCCccEEEEEECCCCHHHHhc
Q 002491 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FD---FMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 381 ~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~-~~---~~~~~V~~i~GD~t~~e~L~r 455 (916)
....|+|.|.+. .+..++++|... |+.|+++.++.+..+.. ..+. +. ....++.++.||.++.+.+.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~------G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~ 124 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH------GYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHE 124 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHH
Confidence 356799999865 577788888753 46776655554433322 1110 00 001247889999999998876
Q ss_pred cCcccccEEEEec
Q 002491 456 VSVSKARAIIVLA 468 (916)
Q Consensus 456 Agi~~A~aVIilt 468 (916)
+ ++.++.|+-+.
T Consensus 125 ~-i~~~d~V~hlA 136 (367)
T PLN02686 125 A-FDGCAGVFHTS 136 (367)
T ss_pred H-HHhccEEEecC
Confidence 4 45677776443
No 400
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.04 E-value=1e+02 Score=32.64 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=51.2
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~--er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 717 (916)
.++++|.|.+. .|..+++.|.+. |..|++++..++. +..+.+.+ .+..+.++++|.++++.+.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGA---GAHVLVNGRNAATLEAAVAALRA--------AGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHh--------cCCceEEEEccCCCHHHHHHHH
Confidence 46788888854 599999999764 7889998865321 11122221 122366789999999877542
Q ss_pred -----CCCCccEEEEecCC
Q 002491 718 -----PLETFDSILILADE 731 (916)
Q Consensus 718 -----~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 80 ~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 12356888877653
No 401
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=41.02 E-value=66 Score=38.36 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=41.0
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
...++|+|+|..+..+++.+.. .|..|++++.++........ .++.+. +.+.+ ++.|
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a------~Ga~ViV~e~dp~~a~~A~~--------~G~~~~-----~leel----l~~A 310 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRG------FGARVVVTEIDPICALQAAM--------EGYQVV-----TLEDV----VETA 310 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCchhHHHHHh--------cCceec-----cHHHH----HhcC
Confidence 4589999999987777777753 24678889888755322211 122211 22222 4579
Q ss_pred cEEEEecC
Q 002491 462 RAIIVLAS 469 (916)
Q Consensus 462 ~aVIiltd 469 (916)
|.||+.+.
T Consensus 311 DIVI~atG 318 (476)
T PTZ00075 311 DIFVTATG 318 (476)
T ss_pred CEEEECCC
Confidence 99998874
No 402
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=41.00 E-value=1e+02 Score=32.45 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=49.4
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc-
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi- 458 (916)
..+++|.|.+. .+..++++|... +..|++. .++++..+...+... ..+.++.++..|.++++.+.++--
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE------GAKVVINYNSSKEAAENLVNELG--KEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc------CCEEEEEcCCcHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46899999765 477788888752 3455554 444544444333221 123468889999999988776411
Q ss_pred -----ccccEEEEecCC
Q 002491 459 -----SKARAIIVLASD 470 (916)
Q Consensus 459 -----~~A~aVIiltdd 470 (916)
.+.+.+|-++..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 235777766643
No 403
>PRK05693 short chain dehydrogenase; Provisional
Probab=40.99 E-value=1.9e+02 Score=31.02 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=50.2
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 717 (916)
++++|.|.+ ..|..+++.|.+. |..|++++..+ +..+.+.+. + +.++.+|.++++.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~--~~~~~~~~~--------~--~~~~~~Dl~~~~~~~~~~~~~ 66 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAA---GYEVWATARKA--EDVEALAAA--------G--FTAVQLDVNDGAALARLAEEL 66 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHC--------C--CeEEEeeCCCHHHHHHHHHHH
Confidence 468999985 4599999999753 88888887543 333333221 2 45678999998877543
Q ss_pred --CCCCccEEEEecCC
Q 002491 718 --PLETFDSILILADE 731 (916)
Q Consensus 718 --~I~~adavIilad~ 731 (916)
.....|.+|-.++.
T Consensus 67 ~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 67 EAEHGGLDVLINNAGY 82 (274)
T ss_pred HHhcCCCCEEEECCCC
Confidence 22467888888764
No 404
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=40.94 E-value=86 Score=34.75 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCCh-HHHHHHhhc-CCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPE-KEREKKLTD-GGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~-~er~~~l~~-~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
.+.++|.|. |-.|..+++.|.+. |..|+++...+. .++...+.. .+ . ...+.++.||.++++.++++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~-----~-~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR---GYTVKATVRDLTDRKKTEHLLALDG-----A-KERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCCcchHHHHHHHhccC-----C-CCceEEEecCCCCcchHHHH-
Confidence 357999997 66799999999764 777876543322 122222211 01 0 12366789999999888765
Q ss_pred CCCccEEEEecCC
Q 002491 719 LETFDSILILADE 731 (916)
Q Consensus 719 I~~adavIilad~ 731 (916)
++.+|.||-++..
T Consensus 75 ~~~~d~vih~A~~ 87 (322)
T PLN02986 75 IEGCDAVFHTASP 87 (322)
T ss_pred HhCCCEEEEeCCC
Confidence 4468999988864
No 405
>PRK12746 short chain dehydrogenase; Provisional
Probab=40.94 E-value=1.8e+02 Score=30.64 Aligned_cols=82 Identities=13% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.+ ..|..+++.|.+. |..+.++... ..+..+.+.+. + .-.+..+.++++|.+|++.+.++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~---G~~v~i~~~r-~~~~~~~~~~~-~---~~~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAND---GALVAIHYGR-NKQAADETIRE-I---ESNGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCC-CHHHHHHHHHH-H---HhcCCcEEEEEcCcCCHHHHHHHHHH
Confidence 3689999975 4599999999764 7777665322 22222222110 0 00123466789999999887653
Q ss_pred ---------CCCCccEEEEecCC
Q 002491 718 ---------PLETFDSILILADE 731 (916)
Q Consensus 718 ---------~I~~adavIilad~ 731 (916)
+-...|.+|-.+..
T Consensus 78 ~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHHhccccCCCCccEEEECCCC
Confidence 12367888877764
No 406
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=40.78 E-value=82 Score=35.02 Aligned_cols=80 Identities=16% Similarity=0.032 Sum_probs=47.5
Q ss_pred eEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC-cccc
Q 002491 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VSKA 461 (916)
Q Consensus 384 HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-i~~A 461 (916)
.++|.|. |-.+..++++|... ++.|++++............. ....+.++.++.||.++.+.+.++= -.++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN------GHDVVILDNLCNSKRSVLPVI-ERLGGKHPTFVEGDIRNEALLTEILHDHAI 74 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC------CCeEEEEecCCCchHhHHHHH-HHhcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence 5899996 55677788888753 466776653211111111100 0112335678899999998877642 2368
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
+.||-++..
T Consensus 75 d~vvh~a~~ 83 (338)
T PRK10675 75 DTVIHFAGL 83 (338)
T ss_pred CEEEECCcc
Confidence 888887643
No 407
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=40.75 E-value=75 Score=34.01 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=50.3
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.+.++|.|.++ .|..+++.|.+. |..|+++... +++..+.+.+. .....+.++.++..|.++++.++++
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~---G~~v~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS---GVNIAFTYNS-NVEEANKIAED---LEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEcCC-CHHHHHHHHHH---HHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46889999865 499999999864 7888777532 22333222210 0001133567889999998766542
Q ss_pred ---CCCCccEEEEecC
Q 002491 718 ---PLETFDSILILAD 730 (916)
Q Consensus 718 ---~I~~adavIilad 730 (916)
.....|.+|-.+.
T Consensus 81 ~~~~~g~id~lv~nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFISNAI 96 (260)
T ss_pred HHHhcCCccEEEECcc
Confidence 1245787776653
No 408
>PRK07023 short chain dehydrogenase; Provisional
Probab=40.70 E-value=74 Score=33.51 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=40.1
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
++++|.|.+. .+..++++|.+. |..|+++.++++. ..... .+.++.++.+|.++.+.+++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~------G~~v~~~~r~~~~--~~~~~-----~~~~~~~~~~D~~~~~~~~~ 62 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP------GIAVLGVARSRHP--SLAAA-----AGERLAEVELDLSDAAAAAA 62 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC------CCEEEEEecCcch--hhhhc-----cCCeEEEEEeccCCHHHHHH
Confidence 3789999865 577778887642 4677777766432 11111 23467888999999988876
No 409
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=40.67 E-value=1.6e+02 Score=34.59 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=51.4
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
.++++|.|.+ ..|..++++|.+. |..+++++..++ +..+.+.+. ...+..+.+|.+|++.+++. ++
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~---G~~Vi~l~r~~~-~l~~~~~~~--------~~~v~~v~~Dvsd~~~v~~~-l~ 244 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ---GAKVVALTSNSD-KITLEINGE--------DLPVKTLHWQVGQEAALAEL-LE 244 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHHHhhc--------CCCeEEEEeeCCCHHHHHHH-hC
Confidence 3589999984 5699999999764 788888875432 222222110 11245678999999888764 45
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
+.|.+|..++.
T Consensus 245 ~IDiLInnAGi 255 (406)
T PRK07424 245 KVDILIINHGI 255 (406)
T ss_pred CCCEEEECCCc
Confidence 78988877653
No 410
>PRK07806 short chain dehydrogenase; Provisional
Probab=40.67 E-value=69 Score=33.76 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|. |..|..+++.|.+. |.+|+++..... ++.+.+.+. +. . .+..+.++.+|.++++.++++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~---G~~V~~~~r~~~-~~~~~~~~~-l~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA---GAHVVVNYRQKA-PRANKVVAE-IE--A-AGGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC---CCEEEEEeCCch-HhHHHHHHH-HH--h-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 367999998 56799999999753 778887764322 122222110 00 0 122366789999999877542
Q ss_pred ---CCCCccEEEEecC
Q 002491 718 ---PLETFDSILILAD 730 (916)
Q Consensus 718 ---~I~~adavIilad 730 (916)
.....|.+|..+.
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 78 AREEFGGLDALVLNAS 93 (248)
T ss_pred HHHhCCCCcEEEECCC
Confidence 1245788887764
No 411
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.66 E-value=71 Score=33.79 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=50.6
Q ss_pred CeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC----
Q 002491 643 EKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL---- 717 (916)
Q Consensus 643 ~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a---- 717 (916)
+.++|.|.+. .|..+++.|.+. |.+++++...+.+...+...+.. . .+..+.++++|.++++.+.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~---g~~vi~~~r~~~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAA---GFDLAINDRPDDEELAATQQELR----A-LGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC---CCEEEEEecCchhHHHHHHHHHH----h-cCCceEEEEecCCCHHHHHHHHHHH
Confidence 4688888744 589999999864 78888887533222111111100 0 123467889999998876542
Q ss_pred --CCCCccEEEEecCC
Q 002491 718 --PLETFDSILILADE 731 (916)
Q Consensus 718 --~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 75 QAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHhcCCCCEEEECCcc
Confidence 12467888887754
No 412
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=40.52 E-value=61 Score=33.30 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=31.1
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHH
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~ 429 (916)
+|-|+|.|..|..++..+... |..|++.|.+++.++...+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~l~~~~~ 40 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPEALERARK 40 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChHHHHhhhh
Confidence 588999999888988888753 6899999999987766544
No 413
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.42 E-value=77 Score=33.99 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|. +..|..+++.|.+. |..|++++..+ +..+.+.+ .+ +..+.++++|.++++.++++=
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~--~~~~~~~~------~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA---GARVAIVDIDA--DNGAAVAA------SL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHH------Hh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 468899997 45699999999864 88888887643 22233322 11 224678899999998776531
Q ss_pred ----CCCccEEEEecC
Q 002491 719 ----LETFDSILILAD 730 (916)
Q Consensus 719 ----I~~adavIilad 730 (916)
....|.+|-.+.
T Consensus 74 ~~~~~g~id~lv~~ag 89 (261)
T PRK08265 74 VVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHhCCCCEEEECCC
Confidence 235688877665
No 414
>PRK07063 short chain dehydrogenase; Provisional
Probab=40.42 E-value=1.5e+02 Score=31.47 Aligned_cols=83 Identities=6% Similarity=0.035 Sum_probs=52.5
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+. .|..+++.|.+. |..|++++..+ ++.+.+.+. +. ....+..+.++.+|.++++.++++-
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~---G~~vv~~~r~~--~~~~~~~~~-~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE---GAAVALADLDA--ALAERAAAA-IA-RDVAGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-HH-hccCCceEEEEEccCCCHHHHHHHHHH
Confidence 35789999854 589999999864 88888887543 222222210 00 0001334678899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 2467888887763
No 415
>PRK07201 short chain dehydrogenase; Provisional
Probab=40.40 E-value=85 Score=38.65 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=53.3
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|... |..|++++++++..+...++.. ..+.++.++.+|.++.+.++++=
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~ 442 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEA------GATVFLVARNGEALDELVAEIR--AKGGTAHAYTCDLTDSAAVDHTVKDI 442 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 35788999865 577788888652 5678888888777665543321 12346788899999988876542
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.+|-.+.
T Consensus 443 ~~~~g~id~li~~Ag 457 (657)
T PRK07201 443 LAEHGHVDYLVNNAG 457 (657)
T ss_pred HHhcCCCCEEEECCC
Confidence 124566766654
No 416
>PRK05855 short chain dehydrogenase; Validated
Probab=40.35 E-value=88 Score=37.50 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=51.9
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
..+++|.|.+. .+..++++|... |..|++++++++..+...+... ..+.++.++.+|.++++.++++-
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~ 386 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFARE------GAEVVASDIDEAAAERTAELIR--AAGAVAHAYRVDVSDADAMEAFAEWV 386 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 56899999755 577788888752 5678888988766555433221 12346778888999888776532
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|-.+.
T Consensus 387 ~~~~g~id~lv~~Ag 401 (582)
T PRK05855 387 RAEHGVPDIVVNNAG 401 (582)
T ss_pred HHhcCCCcEEEECCc
Confidence 123466665553
No 417
>PRK07985 oxidoreductase; Provisional
Probab=40.34 E-value=65 Score=35.49 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.++ .|..+++.|.+. |..|++.....+.+..+.+.+.- .. .+..+.++.+|.++++.++++
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~---G~~Vi~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYARE---GADVAISYLPVEEEDAQDVKKII---EE-CGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEecCCcchhhHHHHHHHH---HH-cCCeEEEEEccCCCHHHHHHHHHH
Confidence 36899999854 599999999864 78888765322222222222100 00 123466789999998876543
Q ss_pred ---CCCCccEEEEecC
Q 002491 718 ---PLETFDSILILAD 730 (916)
Q Consensus 718 ---~I~~adavIilad 730 (916)
.....|.+|..+.
T Consensus 122 ~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 122 AHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHhCCCCEEEECCC
Confidence 2345688887665
No 418
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.31 E-value=1.9e+02 Score=30.06 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=50.5
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|. |..|..+++.|.+. |..++++..... ++.+.+.+. . ...+.++.++++|.++.+.++++-
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~---g~~v~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~D~~~~~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARA---GADVVVHYRSDE-EAAEELVEA---V-EALGRRAQAVQADVTDKAALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCCH-HHHHHHHHH---H-HhcCCceEEEECCcCCHHHHHHHHHHH
Confidence 57999998 45599999999764 667766544332 222222210 0 001234678899999998776531
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|-++..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (249)
T PRK12825 79 VERFGRIDILVNNAGI 94 (249)
T ss_pred HHHcCCCCEEEECCcc
Confidence 2467888887763
No 419
>PRK06940 short chain dehydrogenase; Provisional
Probab=40.26 E-value=74 Score=34.60 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
.+.++|-|.+..|..+++.|. .|..|++++..+ +..+.+.+. + .. .+.++.++.+|.+|++.++++-
T Consensus 2 ~k~~lItGa~gIG~~la~~l~----~G~~Vv~~~r~~--~~~~~~~~~-l--~~-~~~~~~~~~~Dv~d~~~i~~~~~~~ 71 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG----AGKKVLLADYNE--ENLEAAAKT-L--RE-AGFDVSTQEVDVSSRESVKALAATA 71 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh----CCCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 457888888888999999983 378899887543 222222110 0 00 1234677899999988775431
Q ss_pred --CCCccEEEEecCC
Q 002491 719 --LETFDSILILADE 731 (916)
Q Consensus 719 --I~~adavIilad~ 731 (916)
....|.+|-.++.
T Consensus 72 ~~~g~id~li~nAG~ 86 (275)
T PRK06940 72 QTLGPVTGLVHTAGV 86 (275)
T ss_pred HhcCCCCEEEECCCc
Confidence 2357888877753
No 420
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.25 E-value=59 Score=38.49 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVP 678 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p 678 (916)
.++++|+|+|+.|..+++.|.+. |..|++.|..+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~---G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL---GAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC---CCEEEEECCCC
Confidence 45899999999999999998764 88899988653
No 421
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=40.19 E-value=62 Score=35.07 Aligned_cols=82 Identities=23% Similarity=0.193 Sum_probs=52.1
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhh---cccCCccEEEEEECCCCHHHHhccC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~---~~~~~~~V~~i~GD~t~~e~L~rAg 457 (916)
...+|+|+|.|. +..++++.... ....|.++|-|++.++...+-+. ..+.+.++.++.+|+.. -|++..
T Consensus 76 ~p~~VLiiGgG~--G~~~~ell~~~----~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~l~~~~ 147 (246)
T PF01564_consen 76 NPKRVLIIGGGD--GGTARELLKHP----PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--FLKETQ 147 (246)
T ss_dssp ST-EEEEEESTT--SHHHHHHTTST----T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--HHHTSS
T ss_pred CcCceEEEcCCC--hhhhhhhhhcC----CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--HHHhcc
Confidence 467999999996 66677876432 12578899999987765432111 11345678889888743 355544
Q ss_pred cccccEEEEecCC
Q 002491 458 VSKARAIIVLASD 470 (916)
Q Consensus 458 i~~A~aVIiltdd 470 (916)
-++-|.||+-..+
T Consensus 148 ~~~yDvIi~D~~d 160 (246)
T PF01564_consen 148 EEKYDVIIVDLTD 160 (246)
T ss_dssp ST-EEEEEEESSS
T ss_pred CCcccEEEEeCCC
Confidence 4488999887766
No 422
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.14 E-value=71 Score=34.16 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCeEEEEccc---ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002491 642 PEKILFCGWR---RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (916)
Q Consensus 642 ~~hilI~Gwg---~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 717 (916)
.++++|.|.+ ..|..+++.|.+. |..|++.... ++..+.+.+ +....+.+++.|.++++..+++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~---G~~Vi~~~r~--~~~~~~~~~-------~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ---GATVIYTYQN--DRMKKSLQK-------LVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC---CCEEEEecCc--hHHHHHHHh-------hccCceeEEeCCCCCHHHHHHHH
Confidence 4689999986 6799999999864 8888887643 222222222 1122356789999998876542
Q ss_pred -----CCCCccEEEEecC
Q 002491 718 -----PLETFDSILILAD 730 (916)
Q Consensus 718 -----~I~~adavIilad 730 (916)
...+.|.+|-.+.
T Consensus 75 ~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIA 92 (252)
T ss_pred HHHHHHhCCCCEEEEccc
Confidence 2346787776554
No 423
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.10 E-value=1.1e+02 Score=34.20 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=30.9
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l 428 (916)
+|.|+|.|..+..+...|..+ ++.|.+++++++.++...
T Consensus 2 kI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~~~~~i~ 40 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK------KISVNLWGRNHTTFESIN 40 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHHHHHHHH
Confidence 689999999888888888653 478889999887766543
No 424
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.92 E-value=1.4e+02 Score=33.63 Aligned_cols=75 Identities=27% Similarity=0.241 Sum_probs=44.7
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEE--CCCCHHHHhccCccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSG--SPLILADLKKVSVSK 460 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~G--D~t~~e~L~rAgi~~ 460 (916)
++|.|+|.|-.+..+...|..+ +++|++.-+++. ++...+ .+..+....| .......-.......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~~-~~~l~~------~GL~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSRR-LEALKK------KGLRIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHHH-HHHHHh------CCeEEecCCCccccccccccChhhcCC
Confidence 4789999999888888888764 368888887764 444322 1222222222 111122222234448
Q ss_pred ccEEEEecCC
Q 002491 461 ARAIIVLASD 470 (916)
Q Consensus 461 A~aVIiltdd 470 (916)
+|.+|+.+..
T Consensus 68 ~Dlviv~vKa 77 (307)
T COG1893 68 ADLVIVTVKA 77 (307)
T ss_pred CCEEEEEecc
Confidence 9999998854
No 425
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=39.83 E-value=1.1e+02 Score=32.08 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=47.1
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChH-HHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc----
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e-~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA---- 456 (916)
..++|.|.+. .+..++++|... |..|+++++++. .....+.+ .+.++.++.+|.++++.+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~------G~~vi~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEA------GADIVGAGRSEPSETQQQVEA-----LGRRFLSLTADLSDIEAIKALVDSA 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCchHHHHHHHHHh-----cCCceEEEECCCCCHHHHHHHHHHH
Confidence 5688889864 577788888752 567888877542 22222221 133577888899988877632
Q ss_pred --CcccccEEEEecC
Q 002491 457 --SVSKARAIIVLAS 469 (916)
Q Consensus 457 --gi~~A~aVIiltd 469 (916)
...+.|.+|-++.
T Consensus 75 ~~~~~~~d~li~~ag 89 (248)
T TIGR01832 75 VEEFGHIDILVNNAG 89 (248)
T ss_pred HHHcCCCCEEEECCC
Confidence 1234666666553
No 426
>PRK06484 short chain dehydrogenase; Validated
Probab=39.82 E-value=89 Score=37.28 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=43.0
Q ss_pred ccceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 381 ~~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
...+++|.|.+. .+..++++|... |..|++++++++.++...+.. +.++.++.+|.++++.+++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~ 332 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA------GDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVES 332 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHH
Confidence 345788999876 477788888752 568888888877766554321 2345567777777776554
No 427
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=39.79 E-value=1e+02 Score=33.32 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=27.8
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHH
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve 425 (916)
+|+|+|.|..|.++++.|.... -..+.++|.|.-+..
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-----vg~i~ivD~D~Ve~s 37 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-----FGQIHVIDMDTIDVS 37 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-----CCeEEEEeCCEEcch
Confidence 5899999999999999998653 245677777754333
No 428
>PRK03612 spermidine synthase; Provisional
Probab=39.78 E-value=2.5e+02 Score=34.06 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=52.9
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhc------ccCCccEEEEEECCCCHHHHh
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF------DFMGTSVICRSGSPLILADLK 454 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~------~~~~~~V~~i~GD~t~~e~L~ 454 (916)
...+|+++|.|. +.+++++.... ....|+++|.|++.++...+...+ .+.+.++.++.||+.+ -++
T Consensus 297 ~~~rVL~IG~G~--G~~~~~ll~~~----~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~ 368 (521)
T PRK03612 297 RPRRVLVLGGGD--GLALREVLKYP----DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLR 368 (521)
T ss_pred CCCeEEEEcCCc--cHHHHHHHhCC----CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHH
Confidence 346899999996 55666765421 225899999999887765431111 1234578899999864 344
Q ss_pred ccCcccccEEEEecCC
Q 002491 455 KVSVSKARAIIVLASD 470 (916)
Q Consensus 455 rAgi~~A~aVIiltdd 470 (916)
+. -++.|.||+...+
T Consensus 369 ~~-~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 KL-AEKFDVIIVDLPD 383 (521)
T ss_pred hC-CCCCCEEEEeCCC
Confidence 33 3578999987654
No 429
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=39.69 E-value=2.1e+02 Score=28.16 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=45.7
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCC-ccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD-ISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~-~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
+|.|+|. |..|..++..|... .-..++++++..++ +.+-.+. .+. -..+....+....++ .+. +..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~~--~~~g~a~-Dl~~~~~~~~~~~~i~~~~---~~~-----~~~ 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINED--KAEGEAL-DLSHASAPLPSPVRITSGD---YEA-----LKD 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSHH--HHHHHHH-HHHHHHHGSTEEEEEEESS---GGG-----GTT
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCcc--cceeeeh-hhhhhhhhccccccccccc---ccc-----ccc
Confidence 6899999 99999999998765 44688999997532 2221110 000 001111223333343 333 567
Q ss_pred ccEEEEecCCC
Q 002491 722 FDSILILADES 732 (916)
Q Consensus 722 adavIilad~~ 732 (916)
||.||++++..
T Consensus 70 aDivvitag~~ 80 (141)
T PF00056_consen 70 ADIVVITAGVP 80 (141)
T ss_dssp ESEEEETTSTS
T ss_pred ccEEEEecccc
Confidence 88899888754
No 430
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=39.60 E-value=98 Score=33.20 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=30.4
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEE-EEcC----------ChHHHHHH
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVV-LAER----------DKEEMEMD 427 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVV-Lid~----------d~e~ve~~ 427 (916)
...+++|.|+|..+..+++.|.+. +..|| +.|. |.+++.+.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~ 81 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAY 81 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHH
Confidence 357999999999999999888653 34555 7887 76665544
No 431
>PRK07102 short chain dehydrogenase; Provisional
Probab=39.53 E-value=1.5e+02 Score=31.05 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=49.9
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|. |..|..+++.|.+. |..|++++..+. ..+.+.+.- ....+..+.++++|.++++.++++-
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~---G~~Vi~~~r~~~--~~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA---GARLYLAARDVE--RLERLADDL---RARGAVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc---CCEEEEEeCCHH--HHHHHHHHH---HHhcCCeEEEEecCCCChHHHHHHHHHH
Confidence 36889996 55699999999864 778888875432 222221100 0011235778899999988776531
Q ss_pred CCCccEEEEecC
Q 002491 719 LETFDSILILAD 730 (916)
Q Consensus 719 I~~adavIilad 730 (916)
.+..|.+|..+.
T Consensus 74 ~~~~d~vv~~ag 85 (243)
T PRK07102 74 PALPDIVLIAVG 85 (243)
T ss_pred hhcCCEEEECCc
Confidence 234588887654
No 432
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=39.52 E-value=41 Score=39.67 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=29.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccC
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~ 677 (916)
...++++|+|.|..|..++..|.+. |.++++++..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~---g~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK---GYDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Confidence 4567899999999999999999764 7889999854
No 433
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.51 E-value=2.1e+02 Score=30.35 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=50.8
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCC--hHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVP--EKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p--~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 717 (916)
.++++|.|.+. .|..+++.|.+. |..++++...+ ..+..+.+.+. + .. .+..+.++++|.++++.++++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~---G~~vv~i~~~~~~~~~~~~~~~~~-l--~~-~~~~~~~~~~D~~~~~~~~~~~ 80 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQ---GAKAVAIHYNSAASKADAEETVAA-V--KA-AGAKAVAFQADLTTAAAVEKLF 80 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC---CCcEEEEecCCccchHHHHHHHHH-H--HH-hCCcEEEEecCcCCHHHHHHHH
Confidence 35789998754 589999999764 77766664321 11222222110 0 00 123467789999999887653
Q ss_pred -----CCCCccEEEEecCC
Q 002491 718 -----PLETFDSILILADE 731 (916)
Q Consensus 718 -----~I~~adavIilad~ 731 (916)
.....|.+|..+..
T Consensus 81 ~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 81 DDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHhhCCCCEEEECCcc
Confidence 23467888887764
No 434
>PRK05854 short chain dehydrogenase; Provisional
Probab=39.49 E-value=83 Score=35.01 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=51.8
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.+.++|.|.+. .|..+++.|.+. |..|+++.... ++.+.+.+. + ....++..+.++..|.++.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~---G~~Vil~~R~~--~~~~~~~~~-l-~~~~~~~~v~~~~~Dl~d~~sv~~~~~~ 86 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA---GAEVILPVRNR--AKGEAAVAA-I-RTAVPDAKLSLRALDLSSLASVAALGEQ 86 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H-HHhCCCCceEEEEecCCCHHHHHHHHHH
Confidence 46889999865 499999999864 78888887543 222222110 0 0011234577899999998877543
Q ss_pred ---CCCCccEEEEecC
Q 002491 718 ---PLETFDSILILAD 730 (916)
Q Consensus 718 ---~I~~adavIilad 730 (916)
.....|.+|-.+.
T Consensus 87 ~~~~~~~iD~li~nAG 102 (313)
T PRK05854 87 LRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHhCCCccEEEECCc
Confidence 1245787776655
No 435
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.49 E-value=1.8e+02 Score=30.28 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=51.2
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEE-ccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II-~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
++++|.|. |..|..+++.|.+. |..++++ ...+. ..+.+.+. + .. .+..+.++.+|.++.+.++++-
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~---g~~v~~~~~r~~~--~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKE---GAKVVIAYDINEE--AAQELLEE-I--KE-EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEcCCCHH--HHHHHHHH-H--Hh-cCCeEEEEECCCCCHHHHHHHHHH
Confidence 58999998 56699999998754 7888887 65332 22222110 0 00 1234678899999998876531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 1257888887754
No 436
>PRK06125 short chain dehydrogenase; Provisional
Probab=39.47 E-value=1.9e+02 Score=30.70 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--C
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--P 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--~ 718 (916)
.+.++|.|.+ ..|..+++.|.+. |..|++++..+ ++.+.+.+. + ....+..+.++.+|.++++.++++ .
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~---G~~V~~~~r~~--~~~~~~~~~-l--~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAE---GCHLHLVARDA--DALEALAAD-L--RAAHGVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H--HhhcCCceEEEEecCCCHHHHHHHHHH
Confidence 3678888985 4599999999864 78888887543 222222110 0 001123466789999998876542 1
Q ss_pred CCCccEEEEecCC
Q 002491 719 LETFDSILILADE 731 (916)
Q Consensus 719 I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 79 ~g~id~lv~~ag~ 91 (259)
T PRK06125 79 AGDIDILVNNAGA 91 (259)
T ss_pred hCCCCEEEECCCC
Confidence 3568888877653
No 437
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=39.38 E-value=70 Score=37.54 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=46.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|.|..+..++..|... +-..|++++++++..+....++ +. +....+++.+ .+..|
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-----G~~~V~v~~r~~~ra~~la~~~-----g~-------~~~~~~~~~~-~l~~a 243 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-----GVRKITVANRTLERAEELAEEF-----GG-------EAIPLDELPE-ALAEA 243 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-----CCCeEEEEeCCHHHHHHHHHHc-----CC-------cEeeHHHHHH-HhccC
Confidence 46899999999888888777642 1247888899887766554331 11 1223344443 25689
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.||.+++.
T Consensus 244 DvVI~aT~s 252 (423)
T PRK00045 244 DIVISSTGA 252 (423)
T ss_pred CEEEECCCC
Confidence 999999876
No 438
>PRK07576 short chain dehydrogenase; Provisional
Probab=39.38 E-value=2.3e+02 Score=30.30 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=50.2
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.+ ..|..+++.|.+ .|..|++++..+++ .+.+.+. + ... +..+.++.+|.++++.++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~~---~G~~V~~~~r~~~~--~~~~~~~-~--~~~-~~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFAR---AGANVAVASRSQEK--VDAAVAQ-L--QQA-GPEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHH--HHHHHHH-H--HHh-CCceEEEECCCCCHHHHHHHHHH
Confidence 4689999985 569999999975 38888888754332 1111110 0 001 12356789999998877653
Q ss_pred ---CCCCccEEEEecC
Q 002491 718 ---PLETFDSILILAD 730 (916)
Q Consensus 718 ---~I~~adavIilad 730 (916)
.....|.+|..+.
T Consensus 80 ~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 80 IADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1235688886653
No 439
>PRK07069 short chain dehydrogenase; Validated
Probab=39.36 E-value=1.1e+02 Score=32.12 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=44.4
Q ss_pred EEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC-----
Q 002491 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (916)
Q Consensus 385 III~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d-~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg----- 457 (916)
++|.|.+. .+..+++.|... |..|++.+++ ++..+...+++........+.++.+|.++++.++++=
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQ------GAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAAD 75 (251)
T ss_pred EEEECCCChHHHHHHHHHHHC------CCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHH
Confidence 68888765 577788888642 4567777766 4444443322111001122445777888888765431
Q ss_pred -cccccEEEEecC
Q 002491 458 -VSKARAIIVLAS 469 (916)
Q Consensus 458 -i~~A~aVIiltd 469 (916)
....|.+|-+..
T Consensus 76 ~~~~id~vi~~ag 88 (251)
T PRK07069 76 AMGGLSVLVNNAG 88 (251)
T ss_pred HcCCccEEEECCC
Confidence 124566666553
No 440
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=39.34 E-value=1.3e+02 Score=32.81 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred cccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEE-EEEECCCCHHHHhccCc
Q 002491 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVI-CRSGSPLILADLKKVSV 458 (916)
Q Consensus 380 ~~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~-~i~GD~t~~e~L~rAgi 458 (916)
..+.+++|+|.|..+..+++.... -+..|+++|..++..... .+ .++. ++..++ .+.+.. +
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~------lGf~V~v~D~R~~~~~~~------~~--~~~~~~~~~~~--~~~~~~--~ 159 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAP------LPCRVTWVDSREAEFPED------LP--DGVATLVTDEP--EAEVAE--A 159 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhc------CCCEEEEEeCCccccccc------CC--CCceEEecCCH--HHHHhc--C
Confidence 456899999999977777665543 257888988776522110 11 1222 232332 333333 4
Q ss_pred ccccEEEEecCCCCCChhhHHHHHHHH
Q 002491 459 SKARAIIVLASDENADQSDARALRVVL 485 (916)
Q Consensus 459 ~~A~aVIiltdd~~~~~sD~~Ni~~~L 485 (916)
..-++++++|.++ +-|...+..++
T Consensus 160 ~~~t~vvi~th~h---~~D~~~L~~aL 183 (246)
T TIGR02964 160 PPGSYFLVLTHDH---ALDLELCHAAL 183 (246)
T ss_pred CCCcEEEEEeCCh---HHHHHHHHHHH
Confidence 5677899998763 33666555554
No 441
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.33 E-value=2.3e+02 Score=30.04 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=51.1
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHH-HhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREK-KLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~-~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 718 (916)
.+.++|.|.+. .|..+++.|.+. |..++++......+... .+.+ .+..+.++.+|.++++.++++-
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~---G~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA---GADIIITTHGTNWDETRRLIEK--------EGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCcHHHHHHHHHHh--------cCCceEEEEcCCCCHHHHHHHHH
Confidence 46889999865 499999999764 88888886542212222 2221 1224677899999988765421
Q ss_pred -----CCCccEEEEecCC
Q 002491 719 -----LETFDSILILADE 731 (916)
Q Consensus 719 -----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2356888877654
No 442
>PRK12743 oxidoreductase; Provisional
Probab=39.28 E-value=1.7e+02 Score=31.11 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=50.5
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.+.++|.|.+. .|..+++.|.+. |..|+++...+. +..+.+.+. + .. .+..+.++.+|.++.+.++++-
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~---G~~V~~~~~~~~-~~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ---GFDIGITWHSDE-EGAKETAEE-V--RS-HGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCCh-HHHHHHHHH-H--Hh-cCCceEEEEccCCCHHHHHHHHHH
Confidence 35789999865 599999999864 788877753222 222222110 0 00 1234677899999987664421
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 74 LIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2357888887764
No 443
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=39.04 E-value=1e+02 Score=32.20 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=46.6
Q ss_pred eEEEEecch-hHHHHHHHHHHhcccCCCCceEEE-EcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc--C--
Q 002491 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S-- 457 (916)
Q Consensus 384 HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVL-id~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--g-- 457 (916)
-++|.|.+. .+..++++|.+. +..|++ ..++++..++...... ..+.++.++.+|.++++.++++ .
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~i~~~~~~~~ 74 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQE------GYTVAVNYQQNLHAAQEVVNLIT--QAGGKAFVLQADISDENQVVAMFTAID 74 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCChHHHHHHHHHHH--hCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 478888765 577788888753 355554 4566555444333221 1234577889999998877653 1
Q ss_pred --cccccEEEEecC
Q 002491 458 --VSKARAIIVLAS 469 (916)
Q Consensus 458 --i~~A~aVIiltd 469 (916)
....|.+|-.+.
T Consensus 75 ~~~~~id~vi~~ag 88 (247)
T PRK09730 75 QHDEPLAALVNNAG 88 (247)
T ss_pred HhCCCCCEEEECCC
Confidence 123455655553
No 444
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=39.02 E-value=98 Score=35.51 Aligned_cols=82 Identities=12% Similarity=0.185 Sum_probs=53.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCC----CCccCcCCceEEEEEcCcCCHhHH
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGG----LDISGLMNIKLVHREGNAVIRRHL 714 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g-~~v~II~~~p~~er~~~l~~~g----l~~~~l~~~~v~~i~GD~t~~~~L 714 (916)
+..++++|+|+|+- ..+++|.++ |+ -+|+.+|-+| +..+....+. ++...+.+.++.++.-|+- .-|
T Consensus 288 ~~a~~vLvlGGGDG--LAlRellky--P~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~wl 359 (508)
T COG4262 288 RGARSVLVLGGGDG--LALRELLKY--PQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QWL 359 (508)
T ss_pred cccceEEEEcCCch--HHHHHHHhC--CCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HHH
Confidence 56789999998876 356777776 43 5799998765 3333322110 1123467778888888854 456
Q ss_pred hcCCCCCccEEEEecC
Q 002491 715 ESLPLETFDSILILAD 730 (916)
Q Consensus 715 ~~a~I~~adavIilad 730 (916)
+.+.. .+|.+|+--.
T Consensus 360 r~a~~-~fD~vIVDl~ 374 (508)
T COG4262 360 RTAAD-MFDVVIVDLP 374 (508)
T ss_pred Hhhcc-cccEEEEeCC
Confidence 66544 9999999544
No 445
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=38.97 E-value=98 Score=32.85 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=52.6
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|. |..|..+++.|.+. |..|++++..+ +..+.+.+. + .. .+..+.++++|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~---G~~V~~~~r~~--~~~~~~~~~-i--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA---GAEVILNGRDP--AKLAAAAES-L--KG-QGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCceEEEEEccCCCHHHHHHHHHH
Confidence 468999998 45699999999764 88888887543 222222110 0 00 1234677899999998776541
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 81 ~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 81 FEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2357888887764
No 446
>PRK07775 short chain dehydrogenase; Provisional
Probab=38.95 E-value=2.6e+02 Score=30.13 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=52.0
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.+ ..|..+++.|.+. |..|+++...+ ++.+.+.+. + .-.+..+.++++|.++++.++++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~---G~~V~~~~r~~--~~~~~~~~~-~---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA---GFPVALGARRV--EKCEELVDK-I---RADGGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H---HhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4689999974 5599999999764 78887776532 222222110 0 00123467789999999988642
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 81 ~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 81 AEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 13467888888764
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.95 E-value=2.4e+02 Score=30.34 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=27.8
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
+-||+|+|.|..+..+++.|....- ..++++|.|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCE
Confidence 5699999999999999999986532 4667777664
No 448
>PRK07201 short chain dehydrogenase; Provisional
Probab=38.91 E-value=1e+02 Score=38.04 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=52.1
Q ss_pred eEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCC------HhHHhc
Q 002491 644 KILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVI------RRHLES 716 (916)
Q Consensus 644 hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~------~~~L~~ 716 (916)
+|+|.|. |-.|..+++.|.+. ..|.+|+++...+..++.+.+.. .+....+.++.||.++ .+.+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~-~~g~~V~~l~R~~~~~~~~~~~~------~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDR-RREATVHVLVRRQSLSRLEALAA------YWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhc-CCCCEEEEEECcchHHHHHHHHH------hcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 5899998 66799999999742 34788888876443333333221 1111246788999988 456666
Q ss_pred CCCCCccEEEEecC
Q 002491 717 LPLETFDSILILAD 730 (916)
Q Consensus 717 a~I~~adavIilad 730 (916)
+ +.+|.||=++.
T Consensus 75 l--~~~D~Vih~Aa 86 (657)
T PRK07201 75 L--GDIDHVVHLAA 86 (657)
T ss_pred h--cCCCEEEECce
Confidence 5 78999987764
No 449
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=38.84 E-value=80 Score=28.24 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=43.8
Q ss_pred eEEEEecchhHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 384 HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
+|-|+|.|+.+..+++.|...+. ..+.|.++ +++++..++..+++ + +.+... +..+.+ ++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~~~~~~~~~~~-----~--~~~~~~--~~~~~~-----~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSPEKAAELAKEY-----G--VQATAD--DNEEAA-----QEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSHHHHHHHHHHC-----T--TEEESE--EHHHHH-----HHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcHHHHHHHHHhh-----c--cccccC--ChHHhh-----ccCC
Confidence 46788999999999999986531 22566655 99998887765542 1 222211 223333 3788
Q ss_pred EEEEecCC
Q 002491 463 AIIVLASD 470 (916)
Q Consensus 463 aVIiltdd 470 (916)
.||+....
T Consensus 64 vvilav~p 71 (96)
T PF03807_consen 64 VVILAVKP 71 (96)
T ss_dssp EEEE-S-G
T ss_pred EEEEEECH
Confidence 99998864
No 450
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=38.80 E-value=1e+02 Score=31.46 Aligned_cols=79 Identities=23% Similarity=0.168 Sum_probs=42.9
Q ss_pred eEEEEe-cchhHHHHHHHHHHhcccCCCCceEEEEcCC-h--HHHHHHHHhhhcccCCccEEEEEECCCCHHHHhcc--C
Q 002491 384 HILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERD-K--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (916)
Q Consensus 384 HIII~G-~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d-~--e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rA--g 457 (916)
.+||.| .|..+..+++.|.... ...++++.+. . ...+..++++. ..+..+.++..|.+|++.+.++ .
T Consensus 2 tylitGG~gglg~~la~~La~~~-----~~~~il~~r~~~~~~~~~~~i~~l~--~~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG-----ARRLILLGRSGAPSAEAEAAIRELE--SAGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT------SEEEEEESSGGGSTTHHHHHHHHH--HTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEEEECCccHHHHHHHHHHHHcC-----CCEEEEeccCCCccHHHHHHHHHHH--hCCCceeeeccCccCHHHHHHHHHH
Confidence 578887 5667888888887632 2345555444 1 12223333321 1366899999999999998876 2
Q ss_pred c----ccccEEEEecC
Q 002491 458 V----SKARAIIVLAS 469 (916)
Q Consensus 458 i----~~A~aVIiltd 469 (916)
+ ..-+.||=+..
T Consensus 75 ~~~~~~~i~gVih~ag 90 (181)
T PF08659_consen 75 LRQRFGPIDGVIHAAG 90 (181)
T ss_dssp SHTTSS-EEEEEE---
T ss_pred HHhccCCcceeeeeee
Confidence 2 23345665553
No 451
>PRK08226 short chain dehydrogenase; Provisional
Probab=38.72 E-value=1.9e+02 Score=30.70 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=51.1
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChH-HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC-
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEK-EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~-er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~- 718 (916)
.++++|.|... .|..+++.|.+. |..|++++..... +..+.+.. .+..+.++.+|.++++.++++-
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~---G~~Vv~~~r~~~~~~~~~~~~~--------~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH---GANLILLDISPEIEKLADELCG--------RGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHH--------hCCceEEEECCCCCHHHHHHHHH
Confidence 46889999765 599999999764 8888888754321 11111211 1234667899999998776531
Q ss_pred -----CCCccEEEEecCC
Q 002491 719 -----LETFDSILILADE 731 (916)
Q Consensus 719 -----I~~adavIilad~ 731 (916)
...-|.+|-.+..
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2356877776653
No 452
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.70 E-value=91 Score=32.72 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=51.0
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhc----
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLES---- 716 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~---- 716 (916)
.++++|.|. |..|..+++.|.+. |..+++++..+ ++.+.+.+. + .. .+..+.++++|.++.+.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~---G~~vi~~~r~~--~~~~~~~~~-~--~~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQK---GAKLALIDLNQ--EKLEEAVAE-C--GA-LGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H--Hh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 468999998 77799999999764 77888887543 222222110 0 00 12346678999998876643
Q ss_pred --CCCCCccEEEEecC
Q 002491 717 --LPLETFDSILILAD 730 (916)
Q Consensus 717 --a~I~~adavIilad 730 (916)
......|.+|-.++
T Consensus 76 ~~~~~~~id~vi~~ag 91 (253)
T PRK08217 76 IAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHcCCCCEEEECCC
Confidence 11245788888775
No 453
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=38.65 E-value=3e+02 Score=30.27 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=45.2
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCccccc
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A~ 462 (916)
.+|-|+|+|..+..+++.|.... .+-..+.+.+.+++..+...+++ + .. .-..+.+.|. .++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~---~~~el~aV~dr~~~~a~~~a~~~-----g--~~---~~~~~~eell----~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL---PGLTLSAVAVRDPQRHADFIWGL-----R--RP---PPVVPLDQLA----THAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC---CCeEEEEEECCCHHHHHHHHHhc-----C--CC---cccCCHHHHh----cCCC
Confidence 57999999998888888876421 11234557898887766553321 1 00 0134566663 4689
Q ss_pred EEEEecCC
Q 002491 463 AIIVLASD 470 (916)
Q Consensus 463 aVIiltdd 470 (916)
.|+++++.
T Consensus 70 ~Vvi~tp~ 77 (271)
T PRK13302 70 IVVEAAPA 77 (271)
T ss_pred EEEECCCc
Confidence 99999975
No 454
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=38.60 E-value=1.7e+02 Score=31.04 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=27.4
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d 420 (916)
.+.||+|+|.|-.+..+++.|.... -..++++|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~G-----vg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSG-----VGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcC-----CCeEEEEeCC
Confidence 4679999999999999999998643 2356777776
No 455
>PRK04148 hypothetical protein; Provisional
Probab=38.53 E-value=69 Score=31.59 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=46.5
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~ 721 (916)
..+++.+|-| .|..++..|.+. |.+|+.+|.++ +..+.+.+.+ +.++.+|-.+.+.= =-+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~---G~~ViaIDi~~--~aV~~a~~~~----------~~~v~dDlf~p~~~---~y~~ 77 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES---GFDVIVIDINE--KAVEKAKKLG----------LNAFVDDLFNPNLE---IYKN 77 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHhC----------CeEEECcCCCCCHH---HHhc
Confidence 4689999999 888889899864 88999999765 4555554422 45678886654321 1245
Q ss_pred ccEEEEec
Q 002491 722 FDSILILA 729 (916)
Q Consensus 722 adavIila 729 (916)
||.|...-
T Consensus 78 a~liysir 85 (134)
T PRK04148 78 AKLIYSIR 85 (134)
T ss_pred CCEEEEeC
Confidence 66666553
No 456
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=38.51 E-value=79 Score=37.12 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=48.9
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcccc
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~~A 461 (916)
..+++|+|.|..+..+++.|...+ ...+.++.++.+..+.+.+++ .+ +.....++|.+ -+.+|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g-----~~~I~V~nRt~~ra~~La~~~----~~-------~~~~~~~~l~~-~l~~a 243 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALA-----PKQIMLANRTIEKAQKITSAF----RN-------ASAHYLSELPQ-LIKKA 243 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcC-----CCEEEEECCCHHHHHHHHHHh----cC-------CeEecHHHHHH-HhccC
Confidence 357999999998888888886532 257889999887766654432 10 12223345533 36689
Q ss_pred cEEEEecCC
Q 002491 462 RAIIVLASD 470 (916)
Q Consensus 462 ~aVIiltdd 470 (916)
|.||..|..
T Consensus 244 DiVI~aT~a 252 (414)
T PRK13940 244 DIIIAAVNV 252 (414)
T ss_pred CEEEECcCC
Confidence 999999976
No 457
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=38.49 E-value=91 Score=35.70 Aligned_cols=74 Identities=11% Similarity=0.004 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
...+|+|.|. |-.|..+++.|.+. |.+|+.++..+.. .+... . ..+.++.||.++.+.+.++ +
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~---G~~V~~v~r~~~~----~~~~~-----~---~~~~~~~~Dl~d~~~~~~~-~ 83 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE---GHYIIASDWKKNE----HMSED-----M---FCHEFHLVDLRVMENCLKV-T 83 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC---CCEEEEEEecccc----ccccc-----c---ccceEEECCCCCHHHHHHH-H
Confidence 4568999999 78899999999864 7889888743210 01100 0 1135678999998887765 3
Q ss_pred CCccEEEEecC
Q 002491 720 ETFDSILILAD 730 (916)
Q Consensus 720 ~~adavIilad 730 (916)
.++|.||-++.
T Consensus 84 ~~~D~Vih~Aa 94 (370)
T PLN02695 84 KGVDHVFNLAA 94 (370)
T ss_pred hCCCEEEEccc
Confidence 56899998874
No 458
>PRK09242 tropinone reductase; Provisional
Probab=38.45 E-value=97 Score=32.93 Aligned_cols=83 Identities=7% Similarity=0.037 Sum_probs=53.1
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.+.++|.|.+ ..|..+++.|.+. |.+|+++...+ +..+.+.+. + ....++.++.++.+|.++++.++++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~---G~~v~~~~r~~--~~~~~~~~~-l-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGL---GADVLIVARDA--DALAQARDE-L-AEEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHH-H-HhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 3578888874 5699999999764 78888887543 333332220 0 0012344678889999998765431
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|..++.
T Consensus 82 ~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 82 VEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12467888888764
No 459
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=38.39 E-value=89 Score=33.72 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=49.9
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCC-CeEEEEccCChH----H-------------HHHHhhcCCCCccCcCCceEEEEE
Q 002491 644 KILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEK----E-------------REKKLTDGGLDISGLMNIKLVHRE 705 (916)
Q Consensus 644 hilI~Gwg~~~~~li~~L~~~~~~g-~~v~II~~~p~~----e-------------r~~~l~~~gl~~~~l~~~~v~~i~ 705 (916)
+|+|+|-|..|..+++.|... | ..++++|.+..+ . +.+.+++. + ....++.++....
T Consensus 1 kVlvvG~GGlG~eilk~La~~---Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~-l-~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM---GFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA-V-NDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHH-H-HHHCCCCEEEEEe
Confidence 589999999999999999764 3 468887753211 0 11111100 0 0123566777778
Q ss_pred cCcCCHhHHhcCCCCCccEEEEecC
Q 002491 706 GNAVIRRHLESLPLETFDSILILAD 730 (916)
Q Consensus 706 GD~t~~~~L~~a~I~~adavIilad 730 (916)
++..+++.+...-++++|.||...|
T Consensus 76 ~~i~~~~~~~~~f~~~~DvVi~a~D 100 (234)
T cd01484 76 NKVGPEQDFNDTFFEQFHIIVNALD 100 (234)
T ss_pred ccCChhhhchHHHHhCCCEEEECCC
Confidence 8776544443444778897776554
No 460
>PRK09186 flagellin modification protein A; Provisional
Probab=38.38 E-value=95 Score=32.82 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=50.4
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+ ..|..+++.|.+. |..++++...+ +..+.+.+. +. ..+.+..+.++.+|.++++.++++-
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~---g~~v~~~~r~~--~~~~~~~~~-l~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA---GGIVIAADIDK--EALNELLES-LG-KEFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEecCh--HHHHHHHHH-HH-hhcCCCceeEEEecCCCHHHHHHHHHH
Confidence 3679999985 5699999999764 78888886533 232222110 00 0112223556799999998876531
Q ss_pred ----CCCccEEEEecC
Q 002491 719 ----LETFDSILILAD 730 (916)
Q Consensus 719 ----I~~adavIilad 730 (916)
....|.+|-.+.
T Consensus 77 ~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 77 SAEKYGKIDGAVNCAY 92 (256)
T ss_pred HHHHcCCccEEEECCc
Confidence 123688887663
No 461
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=38.35 E-value=1.4e+02 Score=33.16 Aligned_cols=40 Identities=30% Similarity=0.144 Sum_probs=32.1
Q ss_pred ceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (916)
Q Consensus 383 ~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l 428 (916)
.+|.|+|.|..+..++..|... ++.|.+.+++++..+...
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~ 41 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPEQAAEIN 41 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHH
Confidence 3799999999999999888753 578899999887766553
No 462
>PRK00811 spermidine synthase; Provisional
Probab=38.08 E-value=1e+02 Score=34.19 Aligned_cols=81 Identities=9% Similarity=0.069 Sum_probs=46.9
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCC--CCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGG--LDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~g--l~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
.+++++++|.|.-+ ++.++.++ ....+|+++|-++ +..+...+.- +....+.+.++.++.||+.. .|++ .
T Consensus 76 ~p~~VL~iG~G~G~--~~~~~l~~-~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~-~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGG--TLREVLKH-PSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE-T 147 (283)
T ss_pred CCCEEEEEecCchH--HHHHHHcC-CCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-C
Confidence 46799999998743 23444333 2235799998754 3443332210 00011234567889999754 4544 4
Q ss_pred CCCccEEEEec
Q 002491 719 LETFDSILILA 729 (916)
Q Consensus 719 I~~adavIila 729 (916)
-+++|.||+-+
T Consensus 148 ~~~yDvIi~D~ 158 (283)
T PRK00811 148 ENSFDVIIVDS 158 (283)
T ss_pred CCcccEEEECC
Confidence 56899998744
No 463
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=38.01 E-value=95 Score=38.58 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-CC
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-PL 719 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-~I 719 (916)
.++|+|.|. |-.|..+++.|.+. .++.+|+.++..+..+....+... .....+.++.||.+|.+.+.++ ..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~-g~~~~V~~~d~~~~~~~~~~l~~~------~~~~~v~~~~~Dl~d~~~~~~~~~~ 78 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRN-YPDYKIVVLDKLDYCSNLKNLNPS------KSSPNFKFVKGDIASADLVNYLLIT 78 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHh-CCCCEEEEEeCCCccchhhhhhhc------ccCCCeEEEECCCCChHHHHHHHhh
Confidence 468999997 67799999999864 235678777642111111111110 0112467889999999887764 34
Q ss_pred CCccEEEEecCC
Q 002491 720 ETFDSILILADE 731 (916)
Q Consensus 720 ~~adavIilad~ 731 (916)
..+|.||=++..
T Consensus 79 ~~~D~ViHlAa~ 90 (668)
T PLN02260 79 EGIDTIMHFAAQ 90 (668)
T ss_pred cCCCEEEECCCc
Confidence 679999988764
No 464
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=38.00 E-value=3.2e+02 Score=31.75 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=27.2
Q ss_pred ccceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 381 ~~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
.+-+|+|+|.|-.+..+++.|....- ..+.++|.|.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCE
Confidence 36699999999999999999986542 3455666553
No 465
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=37.96 E-value=72 Score=35.13 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC
Q 002491 640 KYPEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP 718 (916)
Q Consensus 640 ~~~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~ 718 (916)
...++++|-|... .|..+++.|.+. |.+++++.. .++|.+.+++. + ..--+..+.++.-|-++++.++++-
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~---g~~liLvaR--~~~kL~~la~~-l--~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARR---GYNLILVAR--REDKLEALAKE-L--EDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC---CCEEEEEeC--cHHHHHHHHHH-H--HHhhCceEEEEECcCCChhHHHHHH
Confidence 3567899999965 599999999864 899999986 35666665541 0 0111356788999999998887643
Q ss_pred C------CCccEEEEecCC
Q 002491 719 L------ETFDSILILADE 731 (916)
Q Consensus 719 I------~~adavIilad~ 731 (916)
- ...|.+|--++-
T Consensus 76 ~~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 76 DELKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHHHhcCCcccEEEECCCc
Confidence 2 256766665554
No 466
>PRK10750 potassium transporter; Provisional
Probab=37.94 E-value=83 Score=37.72 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhhcCCCHHHHHHHHHhhhhccCCCCCc
Q 002491 296 IFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR 334 (916)
Q Consensus 296 l~li~~g~l~~~~ie~~s~~dA~y~~~~titTvGygd~~ 334 (916)
+++.+++.++| ++.+++++||++.++.+++|-||.-.+
T Consensus 190 ~~lT~~~~~ll-~~~Gm~~fdAi~ha~saisTgGFs~~~ 227 (483)
T PRK10750 190 VLLTVACALAL-WFAGMDAFDAIGHSFSTIAIGGFSTHD 227 (483)
T ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHHhccCcCCCc
Confidence 33444455554 457899999999999999999996543
No 467
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=37.84 E-value=95 Score=34.96 Aligned_cols=78 Identities=21% Similarity=0.118 Sum_probs=48.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCcc-c
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-K 460 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi~-~ 460 (916)
.+++|.|.+. .+..+++.|... ++.|+++++++........... ...++.++.||.++.+.+.++--+ +
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLEL------GAEVYGYSLDPPTSPNLFELLN---LAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHC------CCEEEEEeCCCccchhHHHHHh---hcCCceEEEccCCCHHHHHHHHhhcC
Confidence 5799999754 577788888753 4677777766543222111110 122467789999999988764222 4
Q ss_pred ccEEEEecC
Q 002491 461 ARAIIVLAS 469 (916)
Q Consensus 461 A~aVIiltd 469 (916)
.|.||-++.
T Consensus 76 ~d~vih~A~ 84 (349)
T TIGR02622 76 PEIVFHLAA 84 (349)
T ss_pred CCEEEECCc
Confidence 577777664
No 468
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.79 E-value=1.2e+02 Score=32.29 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=45.7
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
...++|.|.+. .+..+++.|.. .|..|+++..+. ..+...+... ..+.++.++.+|.++++.++++=
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~------~G~~v~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~D~~~~~~i~~~~~~~ 85 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAK------AGADIIITTHGT-NWDETRRLIE--KEGRKVTFVQVDLTKPESAEKVVKEA 85 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHH------CCCEEEEEeCCc-HHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788888876 46777777764 256777777662 2222211110 11345778888888888765431
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
...-|.+|-++.
T Consensus 86 ~~~~g~id~li~~ag 100 (258)
T PRK06935 86 LEEFGKIDILVNNAG 100 (258)
T ss_pred HHHcCCCCEEEECCC
Confidence 123466665543
No 469
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=37.63 E-value=1.1e+02 Score=32.67 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=38.8
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhc
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~r 455 (916)
..++|.|.+. .+..++++|.+. +..|+++ .++++..+........ ..+.++.++..|.++++.+++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~ 76 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQS------GVNIAFTYNSNVEEANKIAEDLEQ-KYGIKAKAYPLNILEPETYKE 76 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHH-hcCCceEEEEcCCCCHHHHHH
Confidence 4788888876 577788888753 4556665 4555555443322210 113356677777777666544
No 470
>PRK06841 short chain dehydrogenase; Provisional
Probab=37.55 E-value=1.9e+02 Score=30.52 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=51.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|. |..|..+++.|.+. |..|++++..+. ..+...+ +.+..+..+..|.++++.++++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~---G~~Vi~~~r~~~--~~~~~~~-------~~~~~~~~~~~Dl~~~~~~~~~~~~ 82 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAK---GARVALLDRSED--VAEVAAQ-------LLGGNAKGLVCDVSDSQSVEAAVAA 82 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHH--HHHHHHH-------hhCCceEEEEecCCCHHHHHHHHHH
Confidence 468999997 55699999999764 788888875432 2222211 11223557899999998776531
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 83 ~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 83 VISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2357888887764
No 471
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=37.47 E-value=1.2e+02 Score=34.69 Aligned_cols=58 Identities=26% Similarity=0.308 Sum_probs=36.6
Q ss_pred ceEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEE--CCCCHHHHhc---------cCcccccEEEEecCC
Q 002491 412 VIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSG--SPLILADLKK---------VSVSKARAIIVLASD 470 (916)
Q Consensus 412 ~iVVLid~d--~e~ve~~l~~~~~~~~~~~V~~i~G--D~t~~e~L~r---------Agi~~A~aVIiltdd 470 (916)
..|++.|.+ .+.+-+ +++...+|...||.++.| |.+++....+ ..+.+|+.+|+.-..
T Consensus 357 MNVLLAEA~VpYd~v~e-mddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLeV~KAk~viv~KRs 427 (463)
T COG1282 357 MNVLLAEAKVPYDIVLE-MDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLEVWKAKTVIVFKRS 427 (463)
T ss_pred hhhhhhhccCCHHHHhh-HHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCceeeeeccceEEEEecc
Confidence 466777654 333322 234455677888888888 7777777665 245678888777543
No 472
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=37.40 E-value=53 Score=29.41 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=47.8
Q ss_pred eEEEEcccccHHHHHHHHHHhcCCCCeEEEE-ccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCc
Q 002491 644 KILFCGWRRDIDDMIMVLEAFLAPGSELWML-NEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (916)
Q Consensus 644 hilI~Gwg~~~~~li~~L~~~~~~g~~v~II-~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~a 722 (916)
+|.|+|.|+.|..+++.|.+......++.++ +. ..|+.+.+.+. ++ ..+ ... +..+.++ ++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~------~~-~~~--~~~--~~~~~~~-----~a 62 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKE------YG-VQA--TAD--DNEEAAQ-----EA 62 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHH------CT-TEE--ESE--EHHHHHH-----HT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHh------hc-ccc--ccC--ChHHhhc-----cC
Confidence 5789999999999999998752122788877 54 34666666541 11 111 121 2445544 67
Q ss_pred cEEEEecCCCCcCccccCcHHHHHHHH
Q 002491 723 DSILILADESLEDSIVHSDSRSLATLL 749 (916)
Q Consensus 723 davIilad~~~~~~~~~~Da~~l~t~L 749 (916)
|.|++... +.+...++..+
T Consensus 63 dvvilav~--------p~~~~~v~~~i 81 (96)
T PF03807_consen 63 DVVILAVK--------PQQLPEVLSEI 81 (96)
T ss_dssp SEEEE-S---------GGGHHHHHHHH
T ss_pred CEEEEEEC--------HHHHHHHHHHH
Confidence 76776653 34556666665
No 473
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=37.38 E-value=1.3e+02 Score=31.41 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=47.2
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcC-ChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER-DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~-d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
+.++|.|.+. .+..+++.|.+. |..|+++.. +.+..+...... ...+.++.++.+|.++++.+.++-
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~------G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQ------GANVVINYASSEAGAEALVAEI--GALGGKALAVQGDVSDAESVERAVDEA 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCchhHHHHHHHHH--HhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 5789998765 577788888753 345544443 332333322211 112446788899999998877641
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....+.+|.++.
T Consensus 78 ~~~~~~id~vi~~ag 92 (248)
T PRK05557 78 KAEFGGVDILVNNAG 92 (248)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677777664
No 474
>PRK08278 short chain dehydrogenase; Provisional
Probab=37.35 E-value=1.2e+02 Score=32.94 Aligned_cols=79 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHH-------HHHHHHhhhcccCCccEEEEEECCCCHHHHh
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-------MEMDIAKLEFDFMGTSVICRSGSPLILADLK 454 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~-------ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~ 454 (916)
..++|.|.+. .+..++++|... +..|+++.++.+. ++...++.. ..+.++.++.+|.++++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~D~~~~~~i~ 78 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARD------GANIVIAAKTAEPHPKLPGTIHTAAEEIE--AAGGQALPLVGDVRDEDQVA 78 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecccccccchhhHHHHHHHHHH--hcCCceEEEEecCCCHHHHH
Confidence 5789999876 467788888642 4677777765421 222211111 12346788889999988776
Q ss_pred ccC--c----ccccEEEEecC
Q 002491 455 KVS--V----SKARAIIVLAS 469 (916)
Q Consensus 455 rAg--i----~~A~aVIiltd 469 (916)
++= + .+-+.+|-...
T Consensus 79 ~~~~~~~~~~g~id~li~~ag 99 (273)
T PRK08278 79 AAVAKAVERFGGIDICVNNAS 99 (273)
T ss_pred HHHHHHHHHhCCCCEEEECCC
Confidence 531 1 24566666553
No 475
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=37.32 E-value=2.9e+02 Score=29.52 Aligned_cols=81 Identities=10% Similarity=-0.033 Sum_probs=52.1
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP-- 718 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~-- 718 (916)
.++++|.|.+. .|..+++.|.+. |..+++++..+. +.+.+.+. + .. .+.++.++.+|.++++.++++-
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~---G~~vv~~~~~~~--~~~~~~~~-~--~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA---GATIVFNDINQE--LVDKGLAA-Y--RE-LGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHH--HHHHHHHH-H--Hh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 35799999865 489999999764 788888875432 22222110 0 00 1234677899999998775522
Q ss_pred ----CCCccEEEEecCC
Q 002491 719 ----LETFDSILILADE 731 (916)
Q Consensus 719 ----I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 2457888887764
No 476
>PRK06181 short chain dehydrogenase; Provisional
Probab=37.21 E-value=90 Score=33.25 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=50.4
Q ss_pred CeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChH--HHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC--
Q 002491 643 EKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEK--EREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (916)
Q Consensus 643 ~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~--er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-- 717 (916)
+.++|.|. |..|..+++.|.+. |..|++++..+.+ +..+.+.. .+..+.++.+|.++++.++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~---g~~Vi~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~~ 70 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA---GAQLVLAARNETRLASLAQELAD--------HGGEALVVPTDVSDAEACERLIE 70 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEEEccCCCHHHHHHHHH
Confidence 46899999 45699999999753 7788888764321 11111211 122467789999998876553
Q ss_pred ----CCCCccEEEEecCC
Q 002491 718 ----PLETFDSILILADE 731 (916)
Q Consensus 718 ----~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 71 ~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 71 AAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 12356888877653
No 477
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=36.91 E-value=57 Score=38.27 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCC-eEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
...+++|+|.|..|..++..|... |. .+++++.. .+|.+.+++. +. ++....+.+.+ .+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~--~~ra~~la~~------~g--------~~~~~~~~~~~-~l 240 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRT--LERAEELAEE------FG--------GEAIPLDELPE-AL 240 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCC--HHHHHHHHHH------cC--------CcEeeHHHHHH-Hh
Confidence 357899999999999999999754 54 68888764 3566555441 11 11222233432 25
Q ss_pred CCccEEEEecC
Q 002491 720 ETFDSILILAD 730 (916)
Q Consensus 720 ~~adavIilad 730 (916)
..+|.||..+.
T Consensus 241 ~~aDvVI~aT~ 251 (423)
T PRK00045 241 AEADIVISSTG 251 (423)
T ss_pred ccCCEEEECCC
Confidence 68998888775
No 478
>PRK05086 malate dehydrogenase; Provisional
Probab=36.86 E-value=3e+02 Score=30.89 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=42.7
Q ss_pred ceEEEEec-chhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCC-ccEEEEEE-CCCC-HHHHhccCc
Q 002491 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMG-TSVICRSG-SPLI-LADLKKVSV 458 (916)
Q Consensus 383 ~HIII~G~-g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~-~~V~~i~G-D~t~-~e~L~rAgi 458 (916)
++++|+|. |..+..++..|.... ...+.+++++.++.. +.. ..++.. .....+.| +..+ .+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~~~~-~g~----alDl~~~~~~~~i~~~~~~d~~~~l----- 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIAPVT-PGV----AVDLSHIPTAVKIKGFSGEDPTPAL----- 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecCCCC-cce----ehhhhcCCCCceEEEeCCCCHHHHc-----
Confidence 47999999 887888887764321 235788888876432 100 001111 11123455 2333 2333
Q ss_pred ccccEEEEecCC
Q 002491 459 SKARAIIVLASD 470 (916)
Q Consensus 459 ~~A~aVIiltdd 470 (916)
.+||.||++...
T Consensus 68 ~~~DiVIitaG~ 79 (312)
T PRK05086 68 EGADVVLISAGV 79 (312)
T ss_pred CCCCEEEEcCCC
Confidence 569999998876
No 479
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=36.82 E-value=73 Score=37.40 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=48.2
Q ss_pred CCeEEEEcccccHHHHHHHHHHhcCCC-CeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 642 PEKILFCGWRRDIDDMIMVLEAFLAPG-SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 642 ~~hilI~Gwg~~~~~li~~L~~~~~~g-~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
.++++|+|.|..+..++..|.+. | ..++|++.. .+|.+.+++ .+.. +.+..-+.|.++ +.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt--~~ra~~La~------~~~~-------~~~~~~~~l~~~-l~ 241 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRT--IEKAQKITS------AFRN-------ASAHYLSELPQL-IK 241 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCC--HHHHHHHHH------HhcC-------CeEecHHHHHHH-hc
Confidence 45799999999999999999764 4 578888864 367777765 1221 222223444333 67
Q ss_pred CccEEEEecCC
Q 002491 721 TFDSILILADE 731 (916)
Q Consensus 721 ~adavIilad~ 731 (916)
+||.||..+..
T Consensus 242 ~aDiVI~aT~a 252 (414)
T PRK13940 242 KADIIIAAVNV 252 (414)
T ss_pred cCCEEEECcCC
Confidence 79988887753
No 480
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=36.80 E-value=1.3e+02 Score=33.43 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred CeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCC-cc-CcCCceEEEEEcCcCCHhHHhcCCCC
Q 002491 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD-IS-GLMNIKLVHREGNAVIRRHLESLPLE 720 (916)
Q Consensus 643 ~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~-~~-~l~~~~v~~i~GD~t~~~~L~~a~I~ 720 (916)
+||+|+|+|.-+ +++++.++. +-..+++++-++ +-.+ ++..-+. +. ...+.++..+.+|+. +.+++..-
T Consensus 78 k~VLiiGgGdG~--tlRevlkh~-~ve~i~~VEID~--~Vi~-~ar~~l~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~- 148 (282)
T COG0421 78 KRVLIIGGGDGG--TLREVLKHL-PVERITMVEIDP--AVIE-LARKYLPEPSGGADDPRVEIIIDDGV--EFLRDCEE- 148 (282)
T ss_pred CeEEEECCCccH--HHHHHHhcC-CcceEEEEEcCH--HHHH-HHHHhccCcccccCCCceEEEeccHH--HHHHhCCC-
Confidence 699999999874 556666552 235688888643 2222 2221111 11 011456777888864 45665443
Q ss_pred CccEEEEecCCCCcCccccCcHHHHHHHHHHHHhc
Q 002491 721 TFDSILILADESLEDSIVHSDSRSLATLLLIRDIQ 755 (916)
Q Consensus 721 ~adavIilad~~~~~~~~~~Da~~l~t~L~~r~l~ 755 (916)
++|.||+-+.+.. .=+.+|++--..+...
T Consensus 149 ~fDvIi~D~tdp~------gp~~~Lft~eFy~~~~ 177 (282)
T COG0421 149 KFDVIIVDSTDPV------GPAEALFTEEFYEGCR 177 (282)
T ss_pred cCCEEEEcCCCCC------CcccccCCHHHHHHHH
Confidence 9999999776541 2246777777776665
No 481
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=36.80 E-value=60 Score=35.72 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=43.9
Q ss_pred CeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCCCCc
Q 002491 643 EKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETF 722 (916)
Q Consensus 643 ~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I~~a 722 (916)
-++-|+|.|+.|..+++.|.+. .++.+++.+.+. +.++.+.+.+. +... .-.++.+.|. ++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~~------~g~~------~~~~~~eell----~~~ 68 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIWG------LRRP------PPVVPLDQLA----THA 68 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHHh------cCCC------cccCCHHHHh----cCC
Confidence 5799999999999999998753 256777755442 34566655431 1100 0123445553 357
Q ss_pred cEEEEecC
Q 002491 723 DSILILAD 730 (916)
Q Consensus 723 davIilad 730 (916)
|.|++.+.
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 99999875
No 482
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.66 E-value=73 Score=34.19 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=50.9
Q ss_pred CCeEEEEcc---cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC-
Q 002491 642 PEKILFCGW---RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL- 717 (916)
Q Consensus 642 ~~hilI~Gw---g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a- 717 (916)
.+.++|.|. +..|..+++.|.+. |..|++.+....++..+.+.+ .+.. .+.++..|.++++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~---G~~v~l~~r~~~~~~~~~~~~------~~~~-~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ---GAEVVLTGFGRALRLTERIAK------RLPE-PAPVLELDVTNEEHLASLA 76 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC---CCEEEEecCccchhHHHHHHH------hcCC-CCcEEeCCCCCHHHHHHHH
Confidence 358999997 56799999999764 788888764322233333332 1111 345688999999876542
Q ss_pred -----CCCCccEEEEecC
Q 002491 718 -----PLETFDSILILAD 730 (916)
Q Consensus 718 -----~I~~adavIilad 730 (916)
.....|.+|-.+.
T Consensus 77 ~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIG 94 (256)
T ss_pred HHHHHHcCCCcEEEEccc
Confidence 2356788877665
No 483
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=36.58 E-value=3.2e+02 Score=32.68 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=26.2
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCCh
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~ 421 (916)
..+++|+|.|+.+..+++.+..... .+-.+|-++|.++
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~~~--~g~~vVGfIDd~~ 183 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSEEM--MGFDVIAFFDTDA 183 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhCcc--CCcEEEEEEcCCc
Confidence 3579999999999998888864321 1224566677654
No 484
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=36.52 E-value=53 Score=42.76 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=30.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHhcCCCCeEEEEccC
Q 002491 640 KYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEV 677 (916)
Q Consensus 640 ~~~~hilI~Gwg~~~~~li~~L~~~~~~g~~v~II~~~ 677 (916)
...++|+|+|.|..|...+..|.+. |.+|+|++..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~---G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA---GHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc---CCeEEEEecc
Confidence 3467999999999999999999864 7889999864
No 485
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=36.51 E-value=3.7e+02 Score=29.94 Aligned_cols=41 Identities=27% Similarity=0.168 Sum_probs=31.7
Q ss_pred cceEEEEecchhHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHH
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (916)
Q Consensus 382 ~~HIII~G~g~~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l 428 (916)
+++|.|+|.|..+..+...|.++ |+.|.++.+.++.++...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~~~~i~ 42 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQRLAAYQ 42 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHHHHHHh
Confidence 46899999999888888888653 478888988766666543
No 486
>PRK05866 short chain dehydrogenase; Provisional
Probab=36.50 E-value=91 Score=34.35 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGW-RRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gw-g~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|. |..|..+++.|.+. |..|++++..+ ++.+.+.+. + .. .+..+.++++|.+|.+.++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~---G~~Vi~~~R~~--~~l~~~~~~-l--~~-~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARR---GATVVAVARRE--DLLDAVADR-I--TR-AGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCH--HHHHHHHHH-H--Hh-cCCcEEEEEccCCCHHHHHHHHHH
Confidence 367999998 45699999999764 78888887543 333322210 0 00 122466789999998866542
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.++.
T Consensus 111 ~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 111 VEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23467988887754
No 487
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.47 E-value=1.3e+02 Score=31.54 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.5
Q ss_pred CCCeEEEEcccccHHHHHHHHHHhcCCCC-eEEEEccC
Q 002491 641 YPEKILFCGWRRDIDDMIMVLEAFLAPGS-ELWMLNEV 677 (916)
Q Consensus 641 ~~~hilI~Gwg~~~~~li~~L~~~~~~g~-~v~II~~~ 677 (916)
...+|+|+|-|..|..+++.|... |. .++++|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCC
Confidence 357899999999999999999865 54 78888864
No 488
>PRK08303 short chain dehydrogenase; Provisional
Probab=36.47 E-value=1.1e+02 Score=33.92 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCC
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD 420 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d 420 (916)
..+++|.|.+. .+..++++|... |..|++++++
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~------G~~Vv~~~r~ 41 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAA------GATVYVTGRS 41 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEEecc
Confidence 35788889875 577788888752 4677777765
No 489
>PRK07890 short chain dehydrogenase; Provisional
Probab=36.45 E-value=81 Score=33.40 Aligned_cols=81 Identities=10% Similarity=0.111 Sum_probs=52.6
Q ss_pred CCeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.+ ..|..+++.|.+. |..|++++..+. ..+.+.+. +. . .+..+.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~---G~~V~~~~r~~~--~~~~~~~~-~~--~-~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA---GADVVLAARTAE--RLDEVAAE-ID--D-LGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHH-HH--H-hCCceEEEecCCCCHHHHHHHHHH
Confidence 4679999985 5599999999864 788888875432 22222210 00 0 123467889999999877542
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 76 ~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 76 ALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHcCCccEEEECCcc
Confidence 12467888887753
No 490
>PRK06483 dihydromonapterin reductase; Provisional
Probab=36.42 E-value=3.3e+02 Score=28.35 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcC---
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESL--- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a--- 717 (916)
.++++|.|.++ .|..+++.|.+. |..|++++..+.+ ..+.+.+ .+ +.++.+|.++++.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~-~~~~~~~--------~~--~~~~~~D~~~~~~~~~~~~~ 67 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ---GQPVIVSYRTHYP-AIDGLRQ--------AG--AQCIQADFSTNAGIMAFIDE 67 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC---CCeEEEEeCCchh-HHHHHHH--------cC--CEEEEcCCCCHHHHHHHHHH
Confidence 45789999865 599999999764 7889888765432 2222222 12 45689999998876542
Q ss_pred ---CCCCccEEEEecCC
Q 002491 718 ---PLETFDSILILADE 731 (916)
Q Consensus 718 ---~I~~adavIilad~ 731 (916)
.....|.+|-.+..
T Consensus 68 ~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 68 LKQHTDGLRAIIHNASD 84 (236)
T ss_pred HHhhCCCccEEEECCcc
Confidence 12357888877653
No 491
>PRK08177 short chain dehydrogenase; Provisional
Probab=36.41 E-value=88 Score=32.57 Aligned_cols=73 Identities=19% Similarity=0.043 Sum_probs=44.1
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccCc---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAgi--- 458 (916)
.+++|.|... .+..++++|... |..|++++++++..+.. .+ ..++.+..+|.++++.++++--
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~-~~------~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER------GWQVTATVRGPQQDTAL-QA------LPGVHIEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC------CCEEEEEeCCCcchHHH-Hh------ccccceEEcCCCCHHHHHHHHHHhh
Confidence 4688999665 467778888642 46788888876554432 21 1245566778777766544311
Q ss_pred -ccccEEEEec
Q 002491 459 -SKARAIIVLA 468 (916)
Q Consensus 459 -~~A~aVIilt 468 (916)
.+.+.+|..+
T Consensus 69 ~~~id~vi~~a 79 (225)
T PRK08177 69 GQRFDLLFVNA 79 (225)
T ss_pred cCCCCEEEEcC
Confidence 2455555554
No 492
>PRK05650 short chain dehydrogenase; Provisional
Probab=36.23 E-value=2.3e+02 Score=30.42 Aligned_cols=79 Identities=13% Similarity=-0.011 Sum_probs=49.9
Q ss_pred eEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC----
Q 002491 644 KILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP---- 718 (916)
Q Consensus 644 hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~---- 718 (916)
+++|.|.+ ..|..++++|.+. |..|+++...+ ++.+.+.+. + .-.+..+.++.+|.++++.++++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~---g~~V~~~~r~~--~~~~~~~~~-l---~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE---GWRLALADVNE--EGGEETLKL-L---REAGGDGFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHH-H---HhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 68899984 5699999999764 78888877532 222221110 0 001234667899999988776531
Q ss_pred --CCCccEEEEecCC
Q 002491 719 --LETFDSILILADE 731 (916)
Q Consensus 719 --I~~adavIilad~ 731 (916)
....|.+|-.+..
T Consensus 73 ~~~~~id~lI~~ag~ 87 (270)
T PRK05650 73 EKWGGIDVIVNNAGV 87 (270)
T ss_pred HHcCCCCEEEECCCC
Confidence 2467888877653
No 493
>PRK12743 oxidoreductase; Provisional
Probab=36.18 E-value=1.4e+02 Score=31.87 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=48.3
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC---
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--- 457 (916)
+.++|.|.+. .+..++++|... |..|+++ ..+.+..+...+... ..+.++.++.+|.++.+.++++-
T Consensus 3 k~vlItGas~giG~~~a~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQ------GFDIGITWHSDEEGAKETAEEVR--SHGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCChHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4688889875 577788888753 4566665 445544444332211 12446788899999988765531
Q ss_pred ---cccccEEEEecC
Q 002491 458 ---VSKARAIIVLAS 469 (916)
Q Consensus 458 ---i~~A~aVIiltd 469 (916)
....|.+|..+.
T Consensus 75 ~~~~~~id~li~~ag 89 (256)
T PRK12743 75 IQRLGRIDVLVNNAG 89 (256)
T ss_pred HHHcCCCCEEEECCC
Confidence 124677776664
No 494
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.08 E-value=1.3e+02 Score=31.34 Aligned_cols=79 Identities=20% Similarity=0.166 Sum_probs=48.4
Q ss_pred ceEEEEecch-hHHHHHHHHHHhcccCCCCceEEE-EcCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--c
Q 002491 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (916)
Q Consensus 383 ~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVL-id~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg--i 458 (916)
..++|.|.+. .+..++++|.+. ++.|++ +..+.+..+....... ..+.++.++.+|..+++.++++- +
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDEEAAEELVEAVE--ALGRRAQAVQADVTDKAALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCHHHHHHHHHHHH--hcCCceEEEECCcCCHHHHHHHHHHH
Confidence 4788888754 577788888753 345444 5555544333322211 12345788999999999877641 1
Q ss_pred ----ccccEEEEecC
Q 002491 459 ----SKARAIIVLAS 469 (916)
Q Consensus 459 ----~~A~aVIiltd 469 (916)
...+.+|-++.
T Consensus 79 ~~~~~~id~vi~~ag 93 (249)
T PRK12825 79 VERFGRIDILVNNAG 93 (249)
T ss_pred HHHcCCCCEEEECCc
Confidence 34577777664
No 495
>PRK09134 short chain dehydrogenase; Provisional
Probab=36.05 E-value=1.4e+02 Score=31.85 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=47.7
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEE-cCChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLi-d~d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-- 457 (916)
...++|.|.+. .+..++++|.+. +..|+++ ..+.+..+....... ..+.++.++.+|.++.+.+.++=
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAH------GFDVAVHYNRSRDEAEALAAEIR--ALGRRAVALQADLADEAEVRALVAR 80 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45789999876 467788888652 3455554 334444443332211 12345778899999988876541
Q ss_pred ----cccccEEEEecC
Q 002491 458 ----VSKARAIIVLAS 469 (916)
Q Consensus 458 ----i~~A~aVIiltd 469 (916)
...-|.+|-++.
T Consensus 81 ~~~~~~~iD~vi~~ag 96 (258)
T PRK09134 81 ASAALGPITLLVNNAS 96 (258)
T ss_pred HHHHcCCCCEEEECCc
Confidence 124567776654
No 496
>PRK06179 short chain dehydrogenase; Provisional
Probab=36.04 E-value=68 Score=34.38 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=49.6
Q ss_pred CeEEEEccc-ccHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCC---
Q 002491 643 EKILFCGWR-RDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLP--- 718 (916)
Q Consensus 643 ~hilI~Gwg-~~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~--- 718 (916)
++++|.|.+ ..|..++++|.+. |..|+++...+. ..+ ... .+.++++|.+|++.++++=
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~---g~~V~~~~r~~~--~~~----------~~~--~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARA---GYRVFGTSRNPA--RAA----------PIP--GVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCChh--hcc----------ccC--CCeeEEeecCCHHHHHHHHHHH
Confidence 578999985 4599999999764 888888875432 111 112 2567899999998876631
Q ss_pred ---CCCccEEEEecCC
Q 002491 719 ---LETFDSILILADE 731 (916)
Q Consensus 719 ---I~~adavIilad~ 731 (916)
....|.+|..+..
T Consensus 68 ~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVNNAGV 83 (270)
T ss_pred HHhCCCCCEEEECCCC
Confidence 2357888887764
No 497
>PRK05872 short chain dehydrogenase; Provisional
Probab=36.04 E-value=2.9e+02 Score=30.29 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=52.1
Q ss_pred CCeEEEEcccc-cHHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhc-CCCCccCcCCceEEEEEcCcCCHhHHhcC--
Q 002491 642 PEKILFCGWRR-DIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTD-GGLDISGLMNIKLVHREGNAVIRRHLESL-- 717 (916)
Q Consensus 642 ~~hilI~Gwg~-~~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~-~gl~~~~l~~~~v~~i~GD~t~~~~L~~a-- 717 (916)
.+.++|.|.+. .|..+++.|.+. |..|++++..+ ++.+.+.+ .+ .+..+..+.+|.+|++.++++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~--~~l~~~~~~l~------~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHAR---GAKLALVDLEE--AELAALAAELG------GDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCH--HHHHHHHHHhc------CCCcEEEEEecCCCHHHHHHHHH
Confidence 46899999854 599999999764 78888887543 33333322 11 123455678999999877553
Q ss_pred ----CCCCccEEEEecCC
Q 002491 718 ----PLETFDSILILADE 731 (916)
Q Consensus 718 ----~I~~adavIilad~ 731 (916)
.....|.+|..++.
T Consensus 78 ~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 78 EAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 12467888887763
No 498
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=36.01 E-value=5.9e+02 Score=29.29 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=25.6
Q ss_pred cccccccccCCCCChhHHHHhhhheeecccchHHHHHHHHHHHHHHHHHHhhhhhh
Q 002491 254 NFSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAV 309 (916)
Q Consensus 254 ~~~~~~~~~~~~~~l~~rl~y~ld~~~s~~~~~~ll~ll~~~l~li~~g~l~~~~i 309 (916)
.++...+..+++..-.+-+. .+.+.|+..++ .-++-.++=++++|.++|+++
T Consensus 106 g~~fs~k~l~pk~~rlNP~~-GlKriFs~~~l---~el~Ksl~Kv~~~~~v~~~~~ 157 (349)
T PRK12721 106 GPLLASKAIGPKAEKINPVS-NAKQIFSLKSV---FELCKSLLKVVILSLIFAYLL 157 (349)
T ss_pred CceeccccCCCCchhcCHhH-hHHHhcCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666554333322 34455555444 333333444555666666554
No 499
>PRK12937 short chain dehydrogenase; Provisional
Probab=35.87 E-value=1.3e+02 Score=31.50 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=47.2
Q ss_pred cceEEEEecch-hHHHHHHHHHHhcccCCCCceEEEEcC-ChHHHHHHHHhhhcccCCccEEEEEECCCCHHHHhccC--
Q 002491 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER-DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (916)
Q Consensus 382 ~~HIII~G~g~-~~~~ll~eL~~~~~~~~~~~iVVLid~-d~e~ve~~l~~~~~~~~~~~V~~i~GD~t~~e~L~rAg-- 457 (916)
..+++|.|.+. .+..++++|... +..|+++.. +++..+...++.. ..+.++.++..|.++++.++++=
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGSAAAADELVAEIE--AAGGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHH
Confidence 35899999765 567777777652 455655544 3333333322211 12446788889999888776541
Q ss_pred ----cccccEEEEecC
Q 002491 458 ----VSKARAIIVLAS 469 (916)
Q Consensus 458 ----i~~A~aVIiltd 469 (916)
..+.+.+|-.+.
T Consensus 77 ~~~~~~~id~vi~~ag 92 (245)
T PRK12937 77 AETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHcCCCCEEEECCC
Confidence 135677776654
No 500
>PRK07856 short chain dehydrogenase; Provisional
Probab=35.78 E-value=1.6e+02 Score=31.07 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCeEEEEccccc-HHHHHHHHHHhcCCCCeEEEEccCChHHHHHHhhcCCCCccCcCCceEEEEEcCcCCHhHHhcCCC
Q 002491 641 YPEKILFCGWRRD-IDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPL 719 (916)
Q Consensus 641 ~~~hilI~Gwg~~-~~~li~~L~~~~~~g~~v~II~~~p~~er~~~l~~~gl~~~~l~~~~v~~i~GD~t~~~~L~~a~I 719 (916)
..+.++|.|.+.. |..+++.|.+. |..|++++..++. ...+..+.++++|.++++.++++ +
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~---g~~v~~~~r~~~~--------------~~~~~~~~~~~~D~~~~~~~~~~-~ 66 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAA---GATVVVCGRRAPE--------------TVDGRPAEFHAADVRDPDQVAAL-V 66 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCChhh--------------hhcCCceEEEEccCCCHHHHHHH-H
Q ss_pred CCc-------cEEEEecCCCCcCccccCcHHHHHHHHHH
Q 002491 720 ETF-------DSILILADESLEDSIVHSDSRSLATLLLI 751 (916)
Q Consensus 720 ~~a-------davIilad~~~~~~~~~~Da~~l~t~L~~ 751 (916)
+.+ |.+|-.+.........+.+.+..-..+.+
T Consensus 67 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~ 105 (252)
T PRK07856 67 DAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVEL 105 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Done!