Query 002491
Match_columns 916
No_of_seqs 348 out of 2866
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 21:33:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002491.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_54-57//hhsearch_pdb/002491hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gx0_A TRKA domain protein; me 1.0 1 1 496.2 35.2 519 283-916 15-549 (565)
2 3naf_A Calcium-activated potas 1.0 1 1 404.9 47.4 550 343-915 15-740 (798)
3 4g65_A TRK system potassium up 1.0 1 1 367.6 29.1 430 382-914 3-442 (461)
4 4hpf_A Potassium channel subfa 1.0 1 1 363.3 34.2 490 381-914 2-689 (722)
5 3mt5_A Potassium large conduct 1.0 1 1 358.2 41.5 515 381-915 2-716 (726)
6 1lnq_A MTHK channels, potassiu 1.0 1 1 325.7 10.2 298 293-620 25-329 (336)
7 3mt5_A Potassium large conduct 1.0 1 1 216.7 21.6 227 641-915 2-262 (726)
8 3naf_A Calcium-activated potas 1.0 1 1 212.0 24.2 231 639-916 50-313 (798)
9 4gx0_A TRKA domain protein; me 1.0 1 1 203.3 11.1 206 383-623 349-556 (565)
10 2aef_A Calcium-gated potassium 1.0 1 1 199.0 18.5 219 374-621 1-224 (234)
No 1
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=496.23 Aligned_cols=519 Identities=15% Similarity=0.165 Sum_probs=406.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH----HCC--CCHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEEEHHHHHHHHH
Q ss_conf 60689999999999999998765463----248--99889999988655236789876-894590353510123579999
Q 002491 283 YPYAKLLALLFATIFLIIFGGLALYA----VSD--SSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFA 355 (916)
Q Consensus 283 ~~~~~~l~ll~~~l~lil~g~~~~~~----ie~--~s~~dAly~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~ifa 355 (916)
..+..++..++++++++++++++|++ +|+ ++|+|||||+++|+||+||||.+ .+..+|+|+++++++|+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~ 94 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLD 94 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 66999999999999999999999999997635888765523222346664106877677982189999999999999999
Q ss_pred HHHHH-HHHHHHHH-HHH----HHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 99999-99999998-874----3038652011453999903504999999999710028999269999599378999997
Q 002491 356 MMLGL-VSDAISEK-VDS----LRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (916)
Q Consensus 356 ~lig~-is~~i~~~-~~~----~r~G~~~v~~k~HVIIiG~g~~~~~li~eL~~~~~~~~~~~iVVLvd~d~e~ie~~l~ 429 (916)
+.++. +++.+... +++ .++++.....++|+||||||+.+..++++|.. .++.|+++|.|++.++...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hviI~G~g~~g~~la~~L~~------~~~~vvvid~~~~~~~~~~~ 168 (565)
T 4gx0_A 95 IILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHILIFGIDPITRTLIRKLES------RNHLFVVVTDNYDQALHLEE 168 (565)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCEEEESCCHHHHHHHHHTTT------TTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHH
T ss_conf 998899999999999999987504123544458729998888689999999997------79989999799999999998
Q ss_pred HHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
Q ss_conf 21002489628999978899888851685454489995589987700599999999985104898751999965999988
Q 002491 430 KLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (916)
Q Consensus 430 ~~~~~~~~~~V~~i~Gd~~~~e~L~rA~I~~A~aVIiltdd~~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~ 509 (916)
. .++.++.||++++++|++|++++|+++|+ +.+ |+.|+.+|+++|+++ . .++++++.++++.+
T Consensus 169 ~-------~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~------D~~n~~~~~~ar~~~-~--~~iiar~~~~~~~~ 231 (565)
T 4gx0_A 169 Q-------EGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLS------DPDNANLCLTVRSLC-Q--TPIIAVVKEPVHGE 231 (565)
T ss_dssp S-------CSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSC------HHHHHHHHHHHHTTC-C--CCEEEECSSGGGHH
T ss_pred H-------CCCEEEEECCCCHHHHHHCCCCCCCEEEE-ECC------CHHHHHHHHHHHHHC-C--CEEEEEECCHHHHH
T ss_conf 2-------39869996899989998569562799999-189------677899999999866-9--64999978887899
Q ss_pred HHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHH-HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-CCCEEEEEEEEE
Q ss_conf 898749994788530999999999997047379-999988326894499931897578868767400-999299999993
Q 002491 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLA-QIWEDILGFENAEFYIKRWPQLDDLRFEEVVIS-FPDAIPCGIKVA 587 (916)
Q Consensus 510 ~l~~~Gad~VevI~~~~l~a~lLa~~a~~Pgi~-~vl~~Ll~~~g~ei~i~~~p~l~G~tl~el~~~-~~~~iviGI~r~ 587 (916)
.++.+|+|. +|+|+...++.+++.+..|+.. .++...-...-.|+.+. .+++.|++++|+..+ ..++.++|++|
T Consensus 232 ~l~~~Gad~--vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~-~s~l~G~~l~el~~~~~~~~~vi~i~r- 307 (565)
T 4gx0_A 232 LLRLAGANQ--VVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH-GTPFAGKTIGESGIRQRTGLSIIGVWE- 307 (565)
T ss_dssp HHHHHTCSE--EECHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred HHHHCCCCE--EECHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEEEEC-CCCCCCCCHHHCCCCHHCCCEEEEEEE-
T ss_conf 999769988--9976999999999985166321101103678569999988-985589898994842105979999998-
Q ss_pred ECCCEEEECCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 22990885899994341898999999379977989995211123456999999997099990563299999999985299
Q 002491 588 AEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAP 667 (916)
Q Consensus 588 ~~~g~v~lnP~~d~~I~~GD~LiVIa~~d~~~~~~~~p~v~~~~~~~~~~~~k~~~hiiIiGw~~~~~~li~eL~~~~~~ 667 (916)
+|+.. +|.+++.|++||.|+++|+.+++.++.... ....+. +|++|||||+.|..++++|.+.
T Consensus 308 --~g~~~-~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~----------~~~~~~-~~viIiG~G~~G~~la~~L~~~--- 370 (565)
T 4gx0_A 308 --RGSLT-TPQRETVLTEQSLLVLAGTKSQLAALEYLI----------GEAPED-ELIFIIGHGRIGCAAAAFLDRK--- 370 (565)
T ss_dssp ----------------------------------------------------CC-CCEEEECCSHHHHHHHHHHHHT---
T ss_pred --CCEEE-CCCCCCEECCCCEEEEEECHHHHHHHHHHH----------CCCCCC-CCEEEECCCHHHHHHHHHHHHC---
T ss_conf --99884-799986867999999996899999999983----------578889-9889989887899999999987---
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 99599992687478888853189874676785399998684778678349988856899930788767646671999999
Q 002491 668 GSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSIVHSDSRSLAT 747 (916)
Q Consensus 668 gs~i~Ii~~~p~~Er~~~l~e~~l~~~~l~~~~v~~i~GD~~~~~~L~~a~I~~Ad~VIilsd~~~~~s~~~~Ds~tl~t 747 (916)
|.++++++.+++ +++ .+ . .++.||++++++|+++++++||.+|++++ .|..|+++
T Consensus 371 g~~v~vid~d~~--~~~----------~~---~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~---------~d~~ni~~ 425 (565)
T 4gx0_A 371 PVPFILIDRQES--PVC----------ND---H-VVVYGDATVGQTLRQAGIDRASGIIVTTN---------DDSTNIFL 425 (565)
T ss_dssp TCCEEEEESSCC--SSC----------CS---S-CEEESCSSSSTHHHHHTTTSCSEEEECCS---------CHHHHHHH
T ss_pred CCCEEEEECCHH--HHH----------HC---C-CEEEECCCCHHHHHHCCCCCCCEEEEECC---------CCHHHHHH
T ss_conf 997899978868--986----------26---8-78990789989998649241399999779---------82679999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHCCCCCCEEECHHHHHHHHHHH
Q ss_conf 99998742457898889986433457776224688530277623899983442110020038983783178999999998
Q 002491 748 LLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMV 827 (916)
Q Consensus 748 ~L~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~a~~~~~IIsEi~d~~~~~ll~~ag~~d~V~S~~l~s~~LA~~ 827 (916)
++++|+++++ ++||+++.++++.+.++.+|++.+|.+..+.+..+++.
T Consensus 426 ~~~ak~l~~~--------------------------------~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~~~~i~~~ 473 (565)
T 4gx0_A 426 TLACRHLHSH--------------------------------IRIVARANGEENVDQLYAAGADFVVSNASVGANILGNL 473 (565)
T ss_dssp HHHHHHHCSS--------------------------------SEEEEEESSTTSHHHHHHHTCSEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHCCC--------------------------------CEEEEEECCHHHHHHHHHCCCCEEECCCHHHHHHHHHH
T ss_conf 9999987899--------------------------------87999978877799999769989981400799999997
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECC-CCCEEECCCCCCCCCEECCC
Q ss_conf 72011999999976146862999708532367987659989987126891999999679-98189789999999703289
Q 002491 828 AEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEEISFFDIMIRGRQRQEIVIGYRLAN-TERAIINPSQKSEPRKWSLD 906 (916)
Q Consensus 828 a~~p~i~~vl~eLl~~eG~ei~i~~~~~y~~~~~~ltF~el~~~~~~~g~iiIGi~~~~-~~~~iiNP~~k~~~~~l~~g 906 (916)
...+.+..+- ++.+++..+.+ ++..+.+..++..+ .+.|..++|+++++ + +.++||.+ ++.+++|
T Consensus 474 ~~~~~~~~~~------~~~~~~~v~~~---s~~~Gk~l~el~l~-~~~~~~v~aI~R~~~~-~~~~~p~~---~~~l~~G 539 (565)
T 4gx0_A 474 LEHKESAFLS------EGMAVFRRPLP---PAMAGKTIAETRLR-PLTGCSIVAIEAPDRA-DILISPPP---ETILAEG 539 (565)
T ss_dssp HHCC----------------------------------------------------------------------------
T ss_pred HCCHHHHHHH------CCEEEEEECCC---CCCCCCCHHHCCHH-HHCCCEEEEEEECCCC-CEEECCCC---CCEECCC
T ss_conf 3564450351------57299997289---87588888991336-6529789999967999-55889699---8787899
Q ss_pred CEEEEEECCC
Q ss_conf 9999996289
Q 002491 907 DVFVVISSGD 916 (916)
Q Consensus 907 D~lIVi~~~e 916 (916)
|.|+++++.+
T Consensus 540 D~liv~g~~~ 549 (565)
T 4gx0_A 540 ARLILIGTSE 549 (565)
T ss_dssp ----------
T ss_pred CEEEEEECHH
T ss_conf 9999998899
No 2
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=404.87 Aligned_cols=550 Identities=15% Similarity=0.190 Sum_probs=395.0
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCH--HHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 351012357999999999999999988743038652-01145399990350--499999999971002899926999959
Q 002491 343 SVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSE-VIEKNHILILGWSD--KLGSLLKQLAVANKSIGGGVIVVLAER 419 (916)
Q Consensus 343 ~v~lil~Gi~ifa~lig~is~~i~~~~~~~r~G~~~-v~~k~HVIIiG~g~--~~~~li~eL~~~~~~~~~~~iVVLvd~ 419 (916)
-+..|++|+++|+++++.+++.+.++.. ..|+.. +..++|+|||||++ ....+++||...........+|++.+.
T Consensus 15 ~~~~IlgGI~lFa~~ig~liel~~~r~~--~~G~y~~~~~k~HIIIcG~~~~~~v~~fL~El~~~~~~~~~~~IVIL~~~ 92 (798)
T 3naf_A 15 KLEEILSKLYHIENELARIKKLLGERKK--YGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNI 92 (798)
T ss_dssp ---------------------------C--CCSSCCCCCSSEEEEEESCCCHHHHHHHHHHHTCTTSCCCCEEEEEEESS
T ss_pred HHEEHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 3513468999999999999999998886--47751223688729999279788999999999751222468868999589
Q ss_pred CH-HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCCEEEEECCC--CCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 93-7899999721002489628999978899888851685454489995589--98770059999999998510489875
Q 002491 420 DK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRG 496 (916)
Q Consensus 420 d~-e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~e~L~rA~I~~A~aVIiltdd--~~~~~sD~~ni~~~Lsir~l~p~~~~ 496 (916)
++ .+++..++. +..++.|++||++++++|+||++++|++||++++. .++..+|++|+.++|++|+++| +.
T Consensus 93 ~p~~eLe~lL~~-----~~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP--~i 165 (798)
T 3naf_A 93 SPNLELEALFKR-----HFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHP--KI 165 (798)
T ss_dssp CCCHHHHHHHHH-----TTTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHST--TC
T ss_pred CCCHHHHHHHHC-----CCCCEEEEECCCCCHHHHHHCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf 975889987643-----36854999907899899973597038899998785566776245999999999997789--98
Q ss_pred EEEEEECCCCCHHHHHH------CCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHCC------------------C
Q ss_conf 19999659999888987------49994788530999999999997047379999988326------------------8
Q 002491 497 HVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF------------------E 552 (916)
Q Consensus 497 ~IIaev~d~e~~~~l~~------~Gad~VevI~~~~l~a~lLa~~a~~Pgi~~vl~~Ll~~------------------~ 552 (916)
+|||++.++++..+++. +|+|. +|++.++.+++|++++++||+..++.+|+.. .
T Consensus 166 ~IIa~~~~~en~~~L~~~~sw~~AGAd~--VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~ 243 (798)
T 3naf_A 166 RIITQMLQYHNKAHLLNIPSWNWKEGDD--AICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGV 243 (798)
T ss_dssp CEEEEESCTTGGGSGGGCTTCCTTTTCE--EEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHCCCCHHCCCCE--EEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 7999988976799987364301148988--99448999999999863997799999996035655443167899874346
Q ss_pred CCEEEEECC-CCCCCCCHHHHHH--H-CCCEEEEEEEEEEC--CCEEEECCCCCCEECCCCEEEEEEECCCCCCCC----
Q ss_conf 944999318-9757886876740--0-99929999999322--990885899994341898999999379977989----
Q 002491 553 NAEFYIKRW-PQLDDLRFEEVVI--S-FPDAIPCGIKVAAE--GGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG---- 622 (916)
Q Consensus 553 g~ei~i~~~-p~l~G~tl~el~~--~-~~~~iviGI~r~~~--~g~v~lnP~~d~~I~~GD~LiVIa~~d~~~~~~---- 622 (916)
+.++|...+ +.+.|++|+|+.. + ..+++++||++... +|++.+||+++++|++||.++|||++++..+-+
T Consensus 244 g~Eiy~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~d~~L~~GD~LivIa~~~~~vk~a~~yc 323 (798)
T 3naf_A 244 SNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYC 323 (798)
T ss_dssp TBCCEEEECCGGGTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCTTCBCCTTCEEEECCBTTTGGGGGGSCS
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHHHH
T ss_conf 86799985781138979999999988738779999983467889808989999878799998999968789999999999
Q ss_pred -CC------CCC---------CC----------------------------C--CCCCC-------CC-----CCCCCCE
Q ss_conf -99------521---------11----------------------------2--34569-------99-----9999970
Q 002491 623 -PL------PEV---------CK----------------------------R--SFLKI-------PD-----PPKYPEK 644 (916)
Q Consensus 623 -~~------p~v---------~~----------------------------~--~~~~~-------~~-----~~k~~~h 644 (916)
.+ |+. ++ + ++... .. .....+|
T Consensus 324 ~~ch~~~~~~e~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~fhw~~~~~~~~~~l~~~~~~~~~~~nH 403 (798)
T 3naf_A 324 KACHXXXXXXXXXXXXXXXXSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGH 403 (798)
T ss_dssp SCCCCCGGGGGGSCCSCCCCCCCCCCCC-----------------CCBCTTSCSBCCCCCCGGGTBCCHHHHHHSCCCSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHCCHHHHHHHCCCCC
T ss_conf 86233211111111111236730124674335663112312332233202565100688756674200456665326888
Q ss_pred EEEECCCC------CHHHHHHHHHHHCC---CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 99990563------29999999998529---9995999926874788888531898746767853999986847786783
Q 002491 645 ILFCGWRR------DIDDMIMVLEAFLA---PGSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 715 (916)
Q Consensus 645 iiIiGw~~------~~~~li~eL~~~~~---~gs~i~Ii~~~p~~Er~~~l~e~~l~~~~l~~~~v~~i~GD~~~~~~L~ 715 (916)
|+||||+. ....++.-|++.-. .-.+|+++.+....+ +.|.. ...++. |.++.|+|...++|+
T Consensus 404 ivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~~l~~IVil~~~~~~~--~~w~~----i~~Fp~--Vy~v~Gspl~~~dL~ 475 (798)
T 3naf_A 404 VVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLK--REWET----LHNFPK--VSILPGTPLSRADLR 475 (798)
T ss_dssp EEEEEECCSSSCCCCTHHHHHHHHCSSSCSTTCCCEEEEBCHHHHH--HHHTT----TTTSSS--EEBCBSCTTCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCH--HHHHH----HHCCCC--EEEECCCCCCHHHHH
T ss_conf 8999806877503545883542420457722469989987887578--99997----517996--699669989878899
Q ss_pred CCCCCCCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCC------HHHHHH
Q ss_conf 499888568999307887-6764667199999999998742457898889986433457-----7762------246885
Q 002491 716 SLPLETFDSILILADESL-EDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSG-----FSHS------SWIREM 783 (916)
Q Consensus 716 ~a~I~~Ad~VIilsd~~~-~~s~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~-----~~~~------~~i~~l 783 (916)
+|+|+.|+++||+++... .+++..+|++++++.|-++++.-...-.-.. ..+..+.- .+.. ..-+..
T Consensus 476 ~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (798)
T 3naf_A 476 AVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQ-ANSQGFTPPGMDRSSPDNSPVHGMLRQPS 554 (798)
T ss_dssp HTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-------------------------------------
T ss_pred HHCHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 85887699899976898787881444178887652065410521234322-33322235443335654444310010123
Q ss_pred HHCCCCCEEEEEEECCCCHHHHHCCCCCC--------------EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE--
Q ss_conf 30277623899983442110020038983--------------78317899999999872011999999976146862--
Q 002491 784 QQASDKSIIISEILDSRTRNLVSVSRISD--------------YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNE-- 847 (916)
Q Consensus 784 ~~a~~~~~IIsEi~d~~~~~ll~~ag~~d--------------~V~S~~l~s~~LA~~a~~p~i~~vl~eLl~~eG~e-- 847 (916)
.+...+++||+|+..+.|.+++......+ -+.|..++..++.|+..++.+..+++.|++.....
T Consensus 555 ~~~~~~ipiitEL~~~~ni~fl~~~~~~~~~~~~~~~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~il~~lvtGg~~~~~ 634 (798)
T 3naf_A 555 ITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPEL 634 (798)
T ss_dssp --CTTCCCEEEEESSTTGGGGGSCCTTCCTTCCGGGSHHHHHTSEEETTHHHHHHHHHHHCTHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHH
T ss_conf 44578885589844877512256667776676324246533562227777888989888378999999999708971788
Q ss_pred ---------------------------EEEECCCCC-CC-CCCCCCHHHHHHHHCC-CCCEEEE-EEECCCC--------
Q ss_conf ---------------------------999708532-36-7987659989987126-8919999-9967998--------
Q 002491 848 ---------------------------MCIKPAEFY-LF-DQEEISFFDIMIRGRQ-RQEIVIG-YRLANTE-------- 888 (916)
Q Consensus 848 ---------------------------i~i~~~~~y-~~-~~~~ltF~el~~~~~~-~g~iiIG-i~~~~~~-------- 888 (916)
+...+.... ++ ...+.||++++..+.. +|.++|| ||..+..
T Consensus 635 e~~~~~~~~~~~~~~~~~~~~~r~~c~l~~l~L~~~p~~~~~~~~tfg~lf~~~l~~~~~l~iGLYR~~~~~~~~~~~~~ 714 (798)
T 3naf_A 635 EALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCT 714 (798)
T ss_dssp HHHTTTSSSCCCCCCCTTGGGTTCCCEEEEEESTTSSTTTTTTTCCHHHHHTHHHHTTCCEECEEEEESTTSSSCCCCCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 87765304645676761101443345201355333676545455868999999998589520461442566556854468
Q ss_pred --CEEECCCCCCCCCEECCCCEEEEEECC
Q ss_conf --189789999999703289999999628
Q 002491 889 --RAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 889 --~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
-++.|||. ++++.+.|.++|+...
T Consensus 715 kryVitnPp~---~~~l~~~D~vf~l~~~ 740 (798)
T 3naf_A 715 KRYVITNPPY---EFELVPTDLIFCLMQF 740 (798)
T ss_dssp CEEEEESCCT---TCCCCSSCEEEEEECC
T ss_pred CCEEEECCCC---CCCCCCCCEEEEEEEC
T ss_conf 8859948986---6704776769999705
No 3
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=1.00 E-value=1 Score=367.61 Aligned_cols=430 Identities=14% Similarity=0.117 Sum_probs=333.8
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf 45399990350499999999971002899926999959937899999721002489628999978899888851685454
Q 002491 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (916)
Q Consensus 382 k~HVIIiG~g~~~~~li~eL~~~~~~~~~~~iVVLvd~d~e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~e~L~rA~I~~A 461 (916)
.+||||||+|+.+..++++|.. .++.|+++|.|++.++.+.++ .++.++.||++++++|++|++++|
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~------~~~~v~vId~d~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVG------ENNDITIVDKDGDRLRELQDK-------YDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCS------TTEEEEEEESCHHHHHHHHHH-------SSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHHH-------CCCEEEEECCCCHHHHHHCCCCCC
T ss_conf 6879999988999999999997------899799998999999999973-------694799970799999985698749
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH------HCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 489995589987700599999999985104898751999965999988898------74999478853099999999999
Q 002491 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIGRLMIQC 535 (916)
Q Consensus 462 ~aVIiltdd~~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~~l~------~~Gad~VevI~~~~l~a~lLa~~ 535 (916)
+.+|+++++ |+.|+.+|+.+|++++ ..++|+|++++++....+ .+|.|. +|+|+.++++.+.+.
T Consensus 70 d~~ia~t~~------De~Nl~~~~~Ak~~~~--~~~~iar~~~~~~~~~~~~l~~~~~~giD~--iIsPe~~~a~~I~~~ 139 (461)
T 4g65_A 70 DMLVAVTNT------DETNMAACQVAFTLFN--TPNRIARIRSPQYLAQKEALFKSGAIPVDH--LIAPEELVTSYIERL 139 (461)
T ss_dssp SEEEECCSC------HHHHHHHHHHHHHHHC--CSSEEEECCCHHHHTTHHHHTTTSSSCCSE--EECHHHHHHHHHHHH
T ss_pred CEEEEECCC------HHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHHHHHHHHCCCCCCCE--EECHHHHHHHHHHHH
T ss_conf 999997498------4899999999998668--764214852602445566654303578544--645899999999986
Q ss_pred HHCCCHHHHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHHCC--CEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEE
Q ss_conf 7047379999988326-89449993189757886876740099--92999999932299088589999434189899999
Q 002491 536 ALQPGLAQIWEDILGF-ENAEFYIKRWPQLDDLRFEEVVISFP--DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVI 612 (916)
Q Consensus 536 a~~Pgi~~vl~~Ll~~-~g~ei~i~~~p~l~G~tl~el~~~~~--~~iviGI~r~~~~g~v~lnP~~d~~I~~GD~LiVI 612 (916)
+..|++.+++...-+. +-.++.+.+.++++|++++++...++ ++.+++++| +|+ .+.|.++++|++||.++++
T Consensus 140 i~~p~~~~~~~f~~g~~~l~e~~v~~~s~l~g~~l~~l~~~~p~~~~~I~aI~R---~g~-~iiP~g~t~i~~gD~v~~i 215 (461)
T 4g65_A 140 IQYPGALQVVSFAEEKVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFR---QGR-PIRPQGTTIIEADDEVFFV 215 (461)
T ss_dssp HTSTTCSEEEEETTTTEEEEEEECCTTSSSTTCBHHHHHHTSTTSCEEEEEEEE---TTE-EECCCTTCBCCTTCEEEEE
T ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCEECCCCHHHHHHHCCCCCEEEEEEEE---CCE-ECCCCCCCEECCCCEEEEE
T ss_conf 568870888882466489999996589736477289888547987549999997---884-5069977252479899998
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCC
Q ss_conf 93799779899952111234569999999970999905632999999999852999959999268747888885318987
Q 002491 613 AEDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMLNEVPEKEREKKLTDGGLD 692 (916)
Q Consensus 613 a~~d~~~~~~~~p~v~~~~~~~~~~~~k~~~hiiIiGw~~~~~~li~eL~~~~~~gs~i~Ii~~~p~~Er~~~l~e~~l~ 692 (916)
+..+++.++.. ..+...+..++++|+|+|+.|..+++.|.+ +..+++|+. +++||+.+++
T Consensus 216 ~~~~~i~~~~~----------~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~----~~~v~iIE~--d~~r~~~la~---- 275 (461)
T 4g65_A 216 AASNHIRSVMS----------ELQRLEKPYRRIMIVGGGNIGASLAKRLEQ----TYSVKLIER--NLQRAEKLSE---- 275 (461)
T ss_dssp EETTTHHHHHH----------HTTGGGSCCCEEEEECCSHHHHHHHHHHTT----TSEEEEEES--CHHHHHHHHH----
T ss_pred ECCCHHHHHHH----------HHCCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCEEEEEC--CHHHHHHHHH----
T ss_conf 32305777887----------644566555279998113899999997522----472699826--8899999998----
Q ss_pred CCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 46767853999986847786783499888568999307887676466719999999999874245789888998643345
Q 002491 693 ISGLMNIKLVHREGNAVIRRHLESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLS 772 (916)
Q Consensus 693 ~~~l~~~~v~~i~GD~~~~~~L~~a~I~~Ad~VIilsd~~~~~s~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~ 772 (916)
.|++. .+++||+++.+.|++++++.+|.++.+++ .|..|+++.|++|+++.+
T Consensus 276 --~l~~~--~Vi~GD~td~~~L~ee~i~~~D~~ia~T~---------~De~Ni~~~llAk~~gv~--------------- 327 (461)
T 4g65_A 276 --ELENT--IVFCGDAADQELLTEENIDQVDVFIALTN---------EDETNIMSAMLAKRMGAK--------------- 327 (461)
T ss_dssp --HCTTS--EEEESCTTCHHHHHHTTGGGCSEEEECCS---------CHHHHHHHHHHHHHTTCS---------------
T ss_pred --HCCCC--EEEECCCCCHHHHHHCCCHHHCEEEECCC---------CCHHHHHHHHHHHHCCCC---------------
T ss_conf --78986--48834545455576618222347998456---------817899999999973996---------------
Q ss_pred CCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 77762246885302776238999834421100200389837831789999999987201199999997614686299970
Q 002491 773 GFSHSSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKP 852 (916)
Q Consensus 773 ~~~~~~~i~~l~~a~~~~~IIsEi~d~~~~~ll~~ag~~d~V~S~~l~s~~LA~~a~~p~i~~vl~eLl~~eG~ei~i~~ 852 (916)
.+|+.+.++++..+++..|++.+|.+..+.+..+.+....+.+..++. |.+....-+.+..
T Consensus 328 ------------------kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i~~~~v~~v~~-l~~g~ae~iE~~~ 388 (461)
T 4g65_A 328 ------------------KVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHVRRADIVNVSS-LRRGAAEAIEAVA 388 (461)
T ss_dssp ------------------EEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHHHHTTCCCEEE-CGGGSCEEEEEEC
T ss_pred ------------------CCCCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCCCEEEE-ECCCCEEEEEEEE
T ss_conf ------------------400003463034444214654020789999999999854256532798-1588537999999
Q ss_pred CCC-CCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCCCEECCCCEEEEEEC
Q ss_conf 853-23679876599899871268919999996799818978999999970328999999962
Q 002491 853 AEF-YLFDQEEISFFDIMIRGRQRQEIVIGYRLANTERAIINPSQKSEPRKWSLDDVFVVISS 914 (916)
Q Consensus 853 ~~~-y~~~~~~ltF~el~~~~~~~g~iiIGi~~~~~~~~iiNP~~k~~~~~l~~gD~lIVi~~ 914 (916)
... .-++-.+.+..++ -..+|.++.++.|++ +.++ |.+ ++.+++||++|++..
T Consensus 389 ~~~~~~S~~vGk~l~dl---~lp~g~~I~aI~R~~--~~ii-P~g---dt~i~~gD~vivf~~ 442 (461)
T 4g65_A 389 HGDESNSKVVGRAVGDI---KLPPGTTIGAIVRGE--EVLI-AHD---RTVIEQDDHVVMFLV 442 (461)
T ss_dssp CSCGGGCSSTTSBGGGS---CCCTTEEEEEEEETT--EEEE-CCT---TCBCCTTCEEEEEES
T ss_pred ECCCCCCCCCCCCHHHC---CCCCCCEEEEEEECC--EEEC-CCC---CCEECCCCEEEEEEC
T ss_conf 64788985379599987---999996999999899--9991-799---978889999999986
No 4
>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=363.30 Aligned_cols=490 Identities=17% Similarity=0.220 Sum_probs=347.0
Q ss_pred CCCEEEEEECCHH--HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf 1453999903504--99999999971002899926999959937899999721002489628999978899888851685
Q 002491 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (916)
Q Consensus 381 ~k~HVIIiG~g~~--~~~li~eL~~~~~~~~~~~iVVLvd~d~e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~e~L~rA~I 458 (916)
.++|||||||+.. +..+++||...........+|++.+.+++. .++.. .+.+..+|.|++||++++++|+||++
T Consensus 2 gk~HivvcG~~~~~~l~~fL~ef~~~~~~~~~~~vVil~~~~p~~---el~~~-l~~~~~~v~~i~Gs~~~~~dL~ra~i 77 (722)
T 4hpf_A 2 GKKFIVVCGNITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPSL---ELETI-FKCYLAYTTFISGSAMKWEDLRRVAV 77 (722)
T ss_dssp -CCEEEEESCCCHHHHHHHHTTC--------CCEEECCBSCC---------CC-CCTTTTSEECCBCCSSCHHHHHHHTG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH---HHHHH-HHHHCCEEEEEECCCCCHHHHHHCCC
T ss_conf 988899978897799999999985404402897499973899888---99998-76307669999758899999972594
Q ss_pred CCCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH------CCCCEEEEECHHHHHHH
Q ss_conf 4544899955899--877005999999999851048987519999659999888987------49994788530999999
Q 002491 459 SKARAIIVLASDE--NADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKL------VGGELIETVVAHDVIGR 530 (916)
Q Consensus 459 ~~A~aVIiltdd~--~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~~l~~------~Gad~VevI~~~~l~a~ 530 (916)
++|++|||+++.. ++..+|+.|+.+++++|+++| +.+++|++.++++..+++. +|+|. +|+++++.+.
T Consensus 78 ~~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p--~~~iivq~~~~~n~~~~~~~~~~~~~gad~--VI~~~el~~~ 153 (722)
T 4hpf_A 78 ESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDS--TTRIIIQILQSHNKVYLPKIPSWNWDTGDN--IICFAELKLG 153 (722)
T ss_dssp GGSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCT--TCCEEEECSSGGGGGHHHHSTTCCTTTTCE--EECHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHHCCCCE--EEEHHHHHHH
T ss_conf 209899996897667751669999999999997689--997999978766689998512456527976--9857998999
Q ss_pred HHHHHHHCCCHHHHHHHHHCCC------------------CCEEEEECCC-CCCCCCHHHHHHH---CCCEEEEEEEEE-
Q ss_conf 9999970473799999883268------------------9449993189-7578868767400---999299999993-
Q 002491 531 LMIQCALQPGLAQIWEDILGFE------------------NAEFYIKRWP-QLDDLRFEEVVIS---FPDAIPCGIKVA- 587 (916)
Q Consensus 531 lLa~~a~~Pgi~~vl~~Ll~~~------------------g~ei~i~~~p-~l~G~tl~el~~~---~~~~iviGI~r~- 587 (916)
+|++++++||++.++.+|+... +.|+|....| .++|++|.++... ..+++++||.+.
T Consensus 154 lla~s~~~PG~stli~~Ll~~~~~~~~~~~~w~~~Y~~g~~~eiy~~~~~~~~~G~tf~e~~~~~~~~~~~iligi~~~~ 233 (722)
T 4hpf_A 154 FIAQGCLVPGLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSDDFAGMSFPEVARLCFLKMHLLLIAIEYKS 233 (722)
T ss_dssp HHHHHHHSTTHHHHHHHTTCCCCSCCCCSSHHHHHHHHHHTCBCCEEECCGGGTTCBHHHHHHHHHHHSCCEEEEEEC--
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99998548987999999973256553301568999752668628995078011778999999999864685799863053
Q ss_pred ---ECCCEEEECCCCCCEECCCCEEEEEEECCCCCC---------------CC---------------CCCCCC------
Q ss_conf ---229908858999943418989999993799779---------------89---------------995211------
Q 002491 588 ---AEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA---------------PG---------------PLPEVC------ 628 (916)
Q Consensus 588 ---~~~g~v~lnP~~d~~I~~GD~LiVIa~~d~~~~---------------~~---------------~~p~v~------ 628 (916)
..++++.+||++++.|++||.+++||++.+..+ +. ..|...
T Consensus 234 ~~~~~~~~i~lNP~~~~~i~~~D~~~~Ia~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (722)
T 4hpf_A 234 LFTDGFCGLILNPPPQVRIRKNTLGFFIAETPKDVRRALFYCSVCHDDVFIPELITNCGCKSRSRQHITVPSVKRMKKCL 313 (722)
T ss_dssp -----CCCCEESCCTTCBCCTTCEEEEEBSCHHHHHGGGC----------------------------------------
T ss_pred CCCCCCCEEEECCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32367873998899883777998899997988997666420000122355566776458854344566677655443334
Q ss_pred ------------------------------------CC----------CCCC------------CCCCCCCCCEEEEECC
Q ss_conf ------------------------------------12----------3456------------9999999970999905
Q 002491 629 ------------------------------------KR----------SFLK------------IPDPPKYPEKILFCGW 650 (916)
Q Consensus 629 ------------------------------------~~----------~~~~------------~~~~~k~~~hiiIiGw 650 (916)
.. +... .....+..+|++|||.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~nhivvc~~ 393 (722)
T 4hpf_A 314 KGISSRISGQDSPPRVSASTSSISNFTTRTLQHDVEQDSDQLDSSGMFHWCKPTSLDKVTLKRTGKSKYKFRNHIVACVF 393 (722)
T ss_dssp ---------------------------------------CCBCSSSSBBCCCCCCHHHHBCCCCC---CCCCSCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCEEEEEC
T ss_conf 45565546767863344555445677653222344566433355674035687551122201224442034687799953
Q ss_pred C------CCHHHHHHHHHHHCCCC---CEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCC
Q ss_conf 6------32999999999852999---95999926874788888531898746767853999986847786783499888
Q 002491 651 R------RDIDDMIMVLEAFLAPG---SELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLET 721 (916)
Q Consensus 651 ~------~~~~~li~eL~~~~~~g---s~i~Ii~~~p~~Er~~~l~e~~l~~~~l~~~~v~~i~GD~~~~~~L~~a~I~~ 721 (916)
+ ......+..|.++-.+. .+|+++...... ...+.. ...++ .|.++.|++.+.++|++++|..
T Consensus 394 ~~~~~~~~gL~~fi~PLRa~~~~~~el~pIViL~~~~~~--~~~w~~----i~~Fp--~Vy~~~GSpl~~~DL~ragi~~ 465 (722)
T 4hpf_A 394 GDAHSAPMGLRNFVMPLRASNYTRKELKDIVFIGSLDYL--QREWRF----LWNFP--QIYILPGCALYSGDLHAANIEQ 465 (722)
T ss_dssp CCTTSCCCCSHHHHGGGGBTTSCGGGCCCEEEEECHHHH--HHHGGG----GTTCS--SEEEEESCTTCHHHHHHTTGGG
T ss_pred CCCCCCCCCCHHHEEECCCCCCCCCCCCCEEEEECCCCC--HHHHHH----HHCCC--CEEEEECCCCCHHHHHHCCCCC
T ss_conf 684423342223124311223552457998998389988--899998----76589--8799989868788887607301
Q ss_pred CCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 568999307887-6764667199999999998742457898889986433457776224688530277623899983442
Q 002491 722 FDSILILADESL-EDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISEILDSR 800 (916)
Q Consensus 722 Ad~VIilsd~~~-~~s~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~a~~~~~IIsEi~d~~ 800 (916)
|+.|||++..+. .++...+|++++++++.++.++.+.. ....+++||+|+.++.
T Consensus 466 a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~-------------------------~~~~~i~iitEL~~~s 520 (722)
T 4hpf_A 466 CSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEK-------------------------SNCRKVPILTELKNPS 520 (722)
T ss_dssp CSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC--------------------------------CCCEEEECSSGG
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------------CCCCCCCEEEEECCCC
T ss_conf 158999868987766660232999999999999976543-------------------------0477786799963710
Q ss_pred CHHHHHCCCCC-----------------CEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEE------------
Q ss_conf 11002003898-----------------378317899999999872011999999976146-862999------------
Q 002491 801 TRNLVSVSRIS-----------------DYVLSNELVSMALAMVAEDKQINRVLEELFAEE-GNEMCI------------ 850 (916)
Q Consensus 801 ~~~ll~~ag~~-----------------d~V~S~~l~s~~LA~~a~~p~i~~vl~eLl~~e-G~ei~i------------ 850 (916)
|.+.++..... --|.+..++..+|.|+..++.+..+++.|++.. +.+...
T Consensus 521 N~~fl~~~~~~~~~~~~~~~~~s~~FAsG~vfs~smldsLl~qsf~n~~i~~ii~~Ll~g~~~~~~~~~~~~~~~~~~~~ 600 (722)
T 4hpf_A 521 NIHFIEQLGGLEGSLQETNLHLSTAFSTGTVFSGSFLDSLLATAFYNYHVLELLQMLVTGGVSSQLEQHLDKDKVYGVAD 600 (722)
T ss_dssp GHHHHHHHHTCCTTTCCSSGGGSHHHHHTSEECGGGGGTHHHHHHHCHHHHHHHHHHHHSCCC-----------------
T ss_pred CCHHHCCCCCCHHCCCCCCCCCCHHHHCCCEEHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 03010313232010347662246334066576999999999998746789999999835887613555432102335676
Q ss_pred --------------ECCCCC---CCC-CCCCCHHHHHHHHCC-CCCEEEE-EEECCCC--------CEEECCCCCCCCCE
Q ss_conf --------------708532---367-987659989987126-8919999-9967998--------18978999999970
Q 002491 851 --------------KPAEFY---LFD-QEEISFFDIMIRGRQ-RQEIVIG-YRLANTE--------RAIINPSQKSEPRK 902 (916)
Q Consensus 851 --------------~~~~~y---~~~-~~~ltF~el~~~~~~-~g~iiIG-i~~~~~~--------~~iiNP~~k~~~~~ 902 (916)
.....+ +++ ..+.||++++..+.. ++.++|| ||..+.. -+++||+. ++.
T Consensus 601 ~~~~~~~~~~~~~i~~~~L~~~~~~~~~~~~tfg~lF~~ll~~~~~i~IGLyR~~~~~~~~~~~~~yV~tnP~~---~~~ 677 (722)
T 4hpf_A 601 SCTSLLSGRNRCKLGLLSLHETILSDVNPRNTFGQLFCGSLDLFGILCVGLYRIIDEEELNPENKRFVITRPAN---EFK 677 (722)
T ss_dssp -------CSCCCEEEEECSSSSGGGGCSCCSBHHHHHHHHHHHHCCEEEEEEEECCCC-----CCEEEEESCCS---SCB
T ss_pred CCCHHCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCC---CCE
T ss_conf 64000134444442220101322441237898999999999867930899512478666777778989969799---885
Q ss_pred ECCCCEEEEEEC
Q ss_conf 328999999962
Q 002491 903 WSLDDVFVVISS 914 (916)
Q Consensus 903 l~~gD~lIVi~~ 914 (916)
+.++|.++|+..
T Consensus 678 l~~~D~Vyvl~~ 689 (722)
T 4hpf_A 678 LLPSDLVFCAIP 689 (722)
T ss_dssp CCSSCEEEEEEC
T ss_pred ECCCCEEEEEEE
T ss_conf 788998999872
No 5
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=1.00 E-value=1 Score=358.19 Aligned_cols=515 Identities=16% Similarity=0.198 Sum_probs=366.0
Q ss_pred CCCEEEEEECCHH--HHHHHHHHHHHCCCCCCCCEEEEECCC-HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCC
Q ss_conf 1453999903504--999999999710028999269999599-3789999972100248962899997889988885168
Q 002491 381 EKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (916)
Q Consensus 381 ~k~HVIIiG~g~~--~~~li~eL~~~~~~~~~~~iVVLvd~d-~e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~e~L~rA~ 457 (916)
.++|||||||... +..+++||...+.......+|++.+.+ ..+++..++++ ..++.|++||++++++|+||+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~~-----~~~V~fI~Gdat~~edL~RA~ 76 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRH-----FTQVEFYQGSVLNPHDLARVK 76 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHHH-----CSSEEEECCCTTSHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHH-----CCCEEEEEECCCCHHHHHHCC
T ss_conf 988799977886889999999997436455687489996899979999998740-----586499992789999997519
Q ss_pred CCCCCEEEEECCC--CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH------HCCCCEEEEECHHHHHH
Q ss_conf 5454489995589--987700599999999985104898751999965999988898------74999478853099999
Q 002491 458 VSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVK------LVGGELIETVVAHDVIG 529 (916)
Q Consensus 458 I~~A~aVIiltdd--~~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~~l~------~~Gad~VevI~~~~l~a 529 (916)
+++|+++|++++. .++..+|++|+.++|++|+++| +.+|||++.++++..+++ .+|+|. +|+++++.+
T Consensus 77 I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP--~i~IVA~~~~~en~~~L~ri~sw~~AGAd~--VI~~~el~g 152 (726)
T 3mt5_A 77 IESADACLILANKYCADPDAEDASNIMRVISIKNYHP--KIRIITQMLQYHNKAHLLNIPSWNWKEGDD--AICLAELKL 152 (726)
T ss_dssp GGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCT--TSCEEEEESCHHHHGGGGGSTTCCTTTTCE--EEEHHHHHH
T ss_pred HHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHCCCHHHCCCCE--EEEHHHHHH
T ss_conf 5014799997675556775247999999999997689--987999978977899886064212148988--996189999
Q ss_pred HHHHHHHHCCCHHHHHHHHHCC------------------CCCEEEEECCC-CCCCCCHHHHHH---HCCCEEEEEEEEE
Q ss_conf 9999997047379999988326------------------89449993189-757886876740---0999299999993
Q 002491 530 RLMIQCALQPGLAQIWEDILGF------------------ENAEFYIKRWP-QLDDLRFEEVVI---SFPDAIPCGIKVA 587 (916)
Q Consensus 530 ~lLa~~a~~Pgi~~vl~~Ll~~------------------~g~ei~i~~~p-~l~G~tl~el~~---~~~~~iviGI~r~ 587 (916)
++|++++++||+..++.+|+.. .+.|+|...++ .+.|++|+|+.. ...+++++||++.
T Consensus 153 ~LLAqs~l~PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v~l~s~~~G~Tf~ea~~~lr~k~gaiLIGI~r~ 232 (726)
T 3mt5_A 153 GFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYK 232 (726)
T ss_dssp HHHHHHHHSTTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEEECCGGGTTSBHHHHHHHHHHTTCCEEEEEEC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999863998799999997234655553267899874457866999857954588799999998886088799999843
Q ss_pred E--CCCEEEECCCCCCEECCCCEEEEEEECCCCCCCCC-----------CCCC---------------------------
Q ss_conf 2--29908858999943418989999993799779899-----------9521---------------------------
Q 002491 588 A--EGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGP-----------LPEV--------------------------- 627 (916)
Q Consensus 588 ~--~~g~v~lnP~~d~~I~~GD~LiVIa~~d~~~~~~~-----------~p~v--------------------------- 627 (916)
. .+|++.+||+.+++|++||.++|||+++...+-+. .|+.
T Consensus 233 ~~~~~g~iilNP~~d~~I~~GD~LiVIa~s~~evkra~~yc~~ch~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~ 312 (726)
T 3mt5_A 233 SANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQPSTLSPKKKQRNGG 312 (726)
T ss_dssp -----CCCEESCCTTCBCCTTCEEEEEESCHHHHHTTTSCCC--------------------------------------
T ss_pred CCCCCCEEEECCCCCCEECCCCEEEEEECCHHHHHHHHEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56889808989999868789998999979789976554012247765578778532777544556653334210234555
Q ss_pred --------CC-----C-------CC------------C-------CCC-----------CCCCCCCEEEEECCCCC----
Q ss_conf --------11-----2-------34------------5-------699-----------99999970999905632----
Q 002491 628 --------CK-----R-------SF------------L-------KIP-----------DPPKYPEKILFCGWRRD---- 653 (916)
Q Consensus 628 --------~~-----~-------~~------------~-------~~~-----------~~~k~~~hiiIiGw~~~---- 653 (916)
++ . .. . ..+ ...+..+||+||+++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tgmfhw~~~~~l~~~~l~~~~~~~~~~~~HivvC~~~~~~s~~ 392 (726)
T 3mt5_A 313 MRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSAL 392 (726)
T ss_dssp -------------------------CTTGGGSCCEETTSCBBCCCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCTTSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 32367788533457853356721010035665532135624315886488875046666553046848999956877752
Q ss_pred --HHHHHHHHHHHCCC---CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCEEEEE
Q ss_conf --99999999985299---9959999268747888885318987467678539999868477867834998885689993
Q 002491 654 --IDDMIMVLEAFLAP---GSELWMLNEVPEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLESLPLETFDSILIL 728 (916)
Q Consensus 654 --~~~li~eL~~~~~~---gs~i~Ii~~~p~~Er~~~l~e~~l~~~~l~~~~v~~i~GD~~~~~~L~~a~I~~Ad~VIil 728 (916)
....++.|++..-+ =.+|+++.+..-.+|+ |.. ...++ +|.++.|.|...++|++|+|+.|+++|||
T Consensus 393 ~gl~~fvmpLRasn~~~~elk~IV~lg~~~~~~~e--w~~----l~nfp--~iy~~~Gspl~~~dL~~~~i~~c~~cvil 464 (726)
T 3mt5_A 393 IGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKRE--WET----LHNFP--KVSILPGTPLSRADLRAVNINLCDMCVIL 464 (726)
T ss_dssp CCTHHHHTGGGBTTSCGGGCCCEEEEECHHHHHHH--HHH----HTTSS--SEEEEESCTTCHHHHHHTTGGGCSEEEEE
T ss_pred HHHHHHEEECCCCCCCHHHCCCEEEECCCCCCHHH--HHH----HHCCC--CEEEECCCCCCHHHHHHHCHHHCCEEEEE
T ss_conf 42466211001355887674988998888537999--999----85488--61785699687675988587558788996
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCC-C-C-CCCCCCC--CCC---HHHHHHHHCCCCCEEEEEEE
Q ss_conf 0788-767646671999999999987424578--988899-8-6-4334577--762---24688530277623899983
Q 002491 729 ADES-LEDSIVHSDSRSLATLLLIRDIQSKRL--PYRDTK-P-T-SLRLSGF--SHS---SWIREMQQASDKSIIISEIL 797 (916)
Q Consensus 729 sd~~-~~~s~~~~Ds~tl~t~L~ir~l~~~~~--~~~~~~-~-~-~~~~~~~--~~~---~~i~~l~~a~~~~~IIsEi~ 797 (916)
+... ..+++...|.+++++.|-++.+.-... .+.... + . |.+.... ++. ..-+.-.+-..+++|++|+.
T Consensus 465 s~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iitEL~ 544 (726)
T 3mt5_A 465 SANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELV 544 (726)
T ss_dssp ECC----------CHHHHHHHHHHHTCEEC-----------------------------------CCEEGGGSCEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEC
T ss_conf 58888767852000566655303200104554453223444556654344566667520011023333467773378741
Q ss_pred CCCCHHHHHCCCCCC--------------EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------
Q ss_conf 442110020038983--------------7831789999999987201199999997614686-----------------
Q 002491 798 DSRTRNLVSVSRISD--------------YVLSNELVSMALAMVAEDKQINRVLEELFAEEGN----------------- 846 (916)
Q Consensus 798 d~~~~~ll~~ag~~d--------------~V~S~~l~s~~LA~~a~~p~i~~vl~eLl~~eG~----------------- 846 (916)
++.|.+.+.+...++ .+.+..++..+|.++..++.+..+++.|++....
T Consensus 545 ~~sni~fl~~~~~~~~~~~~~~~~~fa~G~~f~~s~ldsl~~~~~~n~~i~~~~~~litgg~t~~~e~~~~~~~~l~~~~ 624 (726)
T 3mt5_A 545 NDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGY 624 (726)
T ss_dssp CGGGGTTSCSSSCCCTTSCGGGSHHHHTTCEEEGGGGGTHHHHHHHCHHHHHHHHHHHTSCC---CHHHHHHHSSCCEEC
T ss_pred CCCCCEEEEECCCCCCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
T ss_conf 77641320014666778432433520056243378898998988833789999999980887266888753125656776
Q ss_pred ------------EEEEECCCCCC-C-CCCCCCHHHHHHHHC-CCCCEEEE-EEECCCC----------CEEECCCCCCCC
Q ss_conf ------------29997085323-6-798765998998712-68919999-9967998----------189789999999
Q 002491 847 ------------EMCIKPAEFYL-F-DQEEISFFDIMIRGR-QRQEIVIG-YRLANTE----------RAIINPSQKSEP 900 (916)
Q Consensus 847 ------------ei~i~~~~~y~-~-~~~~ltF~el~~~~~-~~g~iiIG-i~~~~~~----------~~iiNP~~k~~~ 900 (916)
.+...+...-. . .+.+.||++++..+. .+|.++|| ||..+.+ -++.|||. +
T Consensus 625 s~~~~l~~r~rc~~~ql~l~~~~~~~~~~~~tfG~lF~~~l~~~~~lciGlYR~~~~~~~~~~~~~~ryvitnP~~---~ 701 (726)
T 3mt5_A 625 STPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPY---E 701 (726)
T ss_dssp CCHHHHHTTCCCEEEEEETTTSTTTGGGTTCBHHHHHHHHHHHSCCEEEEEEEESCC----CCCCCCEEEEESCCT---T
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCC---C
T ss_conf 6510014334553022035545311135678699999999986890178733236754566667788869938998---7
Q ss_pred CEECCCCEEEEEECC
Q ss_conf 703289999999628
Q 002491 901 RKWSLDDVFVVISSG 915 (916)
Q Consensus 901 ~~l~~gD~lIVi~~~ 915 (916)
+.+.+.|.++|+...
T Consensus 702 ~~l~~~D~vf~l~~~ 716 (726)
T 3mt5_A 702 FELVPTDLIFCLMQF 716 (726)
T ss_dssp CBCCTTCEEEEEECC
T ss_pred CCCCCCCEEEEEECC
T ss_conf 845764469998627
No 6
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=1.00 E-value=1 Score=325.75 Aligned_cols=298 Identities=22% Similarity=0.343 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 999999999876546324899889999988655236789876-8945903535101235799999999999999998-87
Q 002491 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR-VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK-VD 370 (916)
Q Consensus 293 ~~~l~lil~g~~~~~~ie~~s~~dAly~~~~titTvGygd~~-~t~~gRi~~v~lil~Gi~ifa~lig~is~~i~~~-~~ 370 (916)
+++++++++|+++|+++|+++|.+|+||+++|+||+||||.. .+..+|+|+++++++|+++++++++.+++.+.++ ++
T Consensus 25 ~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp TTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988289899999999988542248898779807799999999999999999999999999989999
Q ss_pred HHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCH
Q ss_conf 43038652011453999903504999999999710028999269999599378999997210024896289999788998
Q 002491 371 SLRKGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLIL 450 (916)
Q Consensus 371 ~~r~G~~~v~~k~HVIIiG~g~~~~~li~eL~~~~~~~~~~~iVVLvd~d~e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~ 450 (916)
+. .++.+...++|++|||||+.+..++++|.. .++ |+++|.|++.++ ..+ .++.++.||++++
T Consensus 105 ~~-~~~~~~~~~~~viI~G~G~~g~~l~~~L~~------~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~ 167 (336)
T 1lnq_A 105 KL-MGLIDVAKSRHVVICGWSESTLECLRELRG------SEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRV 167 (336)
T ss_dssp ------------CEEEEESCCHHHHHHHTTGGG------SCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSH
T ss_pred HH-HHHHHHCCCCCEEEECCCHHHHHHHHHHHH------CCC-EEEEECCHHHHH-HHH--------CCCEEEEECCCCH
T ss_conf 98-745443046878997786799999999975------895-899958855514-776--------8947998289998
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECHHHHHHH
Q ss_conf 88851685454489995589987700599999999985104898751999965999988898749994788530999999
Q 002491 451 ADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGR 530 (916)
Q Consensus 451 e~L~rA~I~~A~aVIiltdd~~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~~l~~~Gad~VevI~~~~l~a~ 530 (916)
++|+++++++|+++|+++++ |+.|+.+++.+|+++| +.++++++.++++.+.++.+|+|. +|+|+...+.
T Consensus 168 ~~L~~a~i~~a~~vi~~~~~------d~~n~~~~~~ar~~~~--~~~iiar~~~~~~~~~l~~~G~d~--vi~~~~~~~~ 237 (336)
T 1lnq_A 168 SDLEKANVRGARAVIVDLES------DSETIHCILGIRKIDE--SVRIIAEAERYENIEQLRMAGADQ--VISPFVISGR 237 (336)
T ss_dssp HHHHHTCSTTEEEEEECCSS------HHHHHHHHHHHHTTCT--TSEEEEECSSGGGHHHHHHTTCSE--EECHHHHHHH
T ss_pred HHHHHCCHHHCCEEEECCCC------CHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCE--EECHHHHHHH
T ss_conf 99985594552599996876------1889999999998789--986999988977899999769799--9995676999
Q ss_pred HHHHHHHCCCHHHHHHHHHCCC-C---CEEEEECCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECC
Q ss_conf 9999970473799999883268-9---44999318975788687674009-99299999993229908858999943418
Q 002491 531 LMIQCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKE 605 (916)
Q Consensus 531 lLa~~a~~Pgi~~vl~~Ll~~~-g---~ei~i~~~p~l~G~tl~el~~~~-~~~iviGI~r~~~~g~v~lnP~~d~~I~~ 605 (916)
.+++.+..|++..++++++... + .|+.+.+.+++.|++++|+..+. .++.++|+.| +|+..++|+++++|++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~e~~v~~~s~~~Gk~l~el~l~~~~~~~ii~i~r---~~~~~~~P~~~~~l~~ 314 (336)
T 1lnq_A 238 LMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRA 314 (336)
T ss_dssp HHHHTSSCSHHHHHHHHHTSSCSSCEEEEEECCSSCSSTTCBHHHHCHHHHHCCEEEEEEC---SSCEESSCCTTCBCCS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEEE---CCEEEECCCCCCEECC
T ss_conf 9999983803799999997076774699999689997598898981516016949999998---9977879299818869
Q ss_pred CCEEEEEEECCCCCC
Q ss_conf 989999993799779
Q 002491 606 GDEVLVIAEDDDTYA 620 (916)
Q Consensus 606 GD~LiVIa~~d~~~~ 620 (916)
||.++++|+++++.+
T Consensus 315 gD~liv~g~~~~~~~ 329 (336)
T 1lnq_A 315 GDIILGIGKPEEIER 329 (336)
T ss_dssp SCEEEEEECHHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 999999987999999
No 7
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Probab=1.00 E-value=1 Score=216.69 Aligned_cols=227 Identities=19% Similarity=0.199 Sum_probs=182.8
Q ss_pred CCCEEEEECCCCCHH--HHHHHHHHHC--CCCCEEEEECCC-CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 997099990563299--9999999852--999959999268-74788888531898746767853999986847786783
Q 002491 641 YPEKILFCGWRRDID--DMIMVLEAFL--APGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRHLE 715 (916)
Q Consensus 641 ~~~hiiIiGw~~~~~--~li~eL~~~~--~~gs~i~Ii~~~-p~~Er~~~l~e~~l~~~~l~~~~v~~i~GD~~~~~~L~ 715 (916)
.++|+|||||.+... ..++||.... ....+++++++. |++|.+..+.. ...++.+++|||+++++|+
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h~d~~~~~~~VVIL~~~~P~~ELe~lL~~--------~~~~V~fI~Gdat~~edL~ 73 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKR--------HFTQVEFYQGSVLNPHDLA 73 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHHHCTTTTTCEEEEECSSCCCHHHHTTHHH--------HCSSEEEECCCTTSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHH--------HCCCEEEEEECCCCHHHHH
T ss_conf 98879997788688999999999743645568748999689997999999874--------0586499992789999997
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE
Q ss_conf 49988856899930788767646671999999999987424578988899864334577762246885302776238999
Q 002491 716 SLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIIISE 795 (916)
Q Consensus 716 ~a~I~~Ad~VIilsd~~~~~s~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~a~~~~~IIsE 795 (916)
+|++++|++++|+++... .++..+|+++++++|++|+++|+ ++||++
T Consensus 74 RA~I~~A~aVIIlad~~~-~d~~~sDa~nIl~vLsar~lnP~--------------------------------i~IVA~ 120 (726)
T 3mt5_A 74 RVKIESADACLILANKYC-ADPDAEDASNIMRVISIKNYHPK--------------------------------IRIITQ 120 (726)
T ss_dssp HTTGGGCSEEEEECCTTC-SCHHHHHHHHHHHHHHHHHHCTT--------------------------------SCEEEE
T ss_pred HCCHHHCCEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC--------------------------------CCEEEE
T ss_conf 519501479999767555-67752479999999999976899--------------------------------879999
Q ss_pred EECCCCHHHHH------CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------CCCEEEEE
Q ss_conf 83442110020------0389837831789999999987201199999997614------------------68629997
Q 002491 796 ILDSRTRNLVS------VSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE------------------EGNEMCIK 851 (916)
Q Consensus 796 i~d~~~~~ll~------~ag~~d~V~S~~l~s~~LA~~a~~p~i~~vl~eLl~~------------------eG~ei~i~ 851 (916)
+.++++...+. .+|++++|.+.++.+++||+++..|++..++.+|++. .|+++|..
T Consensus 121 ~~~~en~~~L~ri~sw~~AGAd~VI~~~el~g~LLAqs~l~PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v 200 (726)
T 3mt5_A 121 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTE 200 (726)
T ss_dssp ESCHHHHGGGGGSTTCCTTTTCEEEEHHHHHHHHHHHHHHSTTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEE
T ss_pred ECCHHHHHHHHHCCCHHHCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 78977899886064212148988996189999999998639987999999972346555532678998744578669998
Q ss_pred CCCCCCCCCCCCCHHHHHHHHC-CCCCEEEEEEEC----CCCCEEECCCCCCCCCEECCCCEEEEEECC
Q ss_conf 0853236798765998998712-689199999967----998189789999999703289999999628
Q 002491 852 PAEFYLFDQEEISFFDIMIRGR-QRQEIVIGYRLA----NTERAIINPSQKSEPRKWSLDDVFVVISSG 915 (916)
Q Consensus 852 ~~~~y~~~~~~ltF~el~~~~~-~~g~iiIGi~~~----~~~~~iiNP~~k~~~~~l~~gD~lIVi~~~ 915 (916)
+.+.. ..+++|.++....+ +.|.++||+++. ++ ++++||+. ++.+.+||.+||||++
T Consensus 201 ~l~s~---~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g-~iilNP~~---d~~I~~GD~LiVIa~s 262 (726)
T 3mt5_A 201 YLSSA---FVGLSFPTVCELCFVKLKLLMIAIEYKSANRES-RILINPGN---HLKIQEGTLGFFIASD 262 (726)
T ss_dssp ECCGG---GTTSBHHHHHHHHHHTTCCEEEEEEC------C-CCEESCCT---TCBCCTTCEEEEEESC
T ss_pred ECCCC---CCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCC-EEEECCCC---CCEECCCCEEEEEECC
T ss_conf 57954---588799999998886088799999843568898-08989999---8687899989999797
No 8
>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=211.96 Aligned_cols=231 Identities=18% Similarity=0.190 Sum_probs=171.9
Q ss_pred CCCCCEEEEECCCCCH--HHHHHHHHHHCC--CCCEEEEECCC-CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 9999709999056329--999999998529--99959999268-747888885318987467678539999868477867
Q 002491 639 PKYPEKILFCGWRRDI--DDMIMVLEAFLA--PGSELWMLNEV-PEKEREKKLTDGGLDISGLMNIKLVHREGNAVIRRH 713 (916)
Q Consensus 639 ~k~~~hiiIiGw~~~~--~~li~eL~~~~~--~gs~i~Ii~~~-p~~Er~~~l~e~~l~~~~l~~~~v~~i~GD~~~~~~ 713 (916)
.+..+|+|||||.+.. ..++++|..... .+.+++++++. |+.|.+..+.. + ..++.|++||++++++
T Consensus 50 ~~~k~HIIIcG~~~~~~v~~fL~El~~~~~~~~~~~IVIL~~~~p~~eLe~lL~~-------~-~~~V~fI~Gdat~~e~ 121 (798)
T 3naf_A 50 VSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKR-------H-FTQVEFYQGSVLNPHD 121 (798)
T ss_dssp CCSSEEEEEESCCCHHHHHHHHHHHTCTTSCCCCEEEEEEESSCCCHHHHHHHHH-------T-TTTEEEEECCSSSHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHC-------C-CCCEEEEECCCCCHHH
T ss_conf 3688729999279788999999999751222468868999589975889987643-------3-6854999907899899
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEE
Q ss_conf 83499888568999307887676466719999999999874245789888998643345777622468853027762389
Q 002491 714 LESLPLETFDSILILADESLEDSIVHSDSRSLATLLLIRDIQSKRLPYRDTKPTSLRLSGFSHSSWIREMQQASDKSIII 793 (916)
Q Consensus 714 L~~a~I~~Ad~VIilsd~~~~~s~~~~Ds~tl~t~L~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~a~~~~~II 793 (916)
|++|++++|++|+|+++... .++..+|+++++++|++|+++|+ ++||
T Consensus 122 L~RAgI~~A~aVIIla~~~~-~d~~~~Da~nIl~vLsar~lnP~--------------------------------i~II 168 (798)
T 3naf_A 122 LARVKIESADACLILANKYC-ADPDAEDASNIMRVISIKNYHPK--------------------------------IRII 168 (798)
T ss_dssp HHHTTGGGCSEEEECCCTTC-SCHHHHHHHHHHHHHHHHHHSTT--------------------------------CCEE
T ss_pred HHHCCHHHCCEEEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC--------------------------------CCEE
T ss_conf 97359703889999878556-67762459999999999977899--------------------------------8799
Q ss_pred EEEECCCCHHHHHC------CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------CCCEEE
Q ss_conf 99834421100200------389837831789999999987201199999997614------------------686299
Q 002491 794 SEILDSRTRNLVSV------SRISDYVLSNELVSMALAMVAEDKQINRVLEELFAE------------------EGNEMC 849 (916)
Q Consensus 794 sEi~d~~~~~ll~~------ag~~d~V~S~~l~s~~LA~~a~~p~i~~vl~eLl~~------------------eG~ei~ 849 (916)
+++.++++...+.. +|++.+|.+.++.+++||+++..|++..++.+|++. .|.++|
T Consensus 169 a~~~~~en~~~L~~~~sw~~AGAd~VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~g~Eiy 248 (798)
T 3naf_A 169 TQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMY 248 (798)
T ss_dssp EEESCTTGGGSGGGCTTCCTTTTCEEEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHHTBCCE
T ss_pred EEECCHHHHHHHHHCCCCHHCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 99889767999873643011489889944899999999986399779999999603565544316789987434686799
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHC-CCCCEEEEEEECC---CCCEEECCCCCCCCCEECCCCEEEEEECCC
Q ss_conf 970853236798765998998712-6891999999679---981897899999997032899999996289
Q 002491 850 IKPAEFYLFDQEEISFFDIMIRGR-QRQEIVIGYRLAN---TERAIINPSQKSEPRKWSLDDVFVVISSGD 916 (916)
Q Consensus 850 i~~~~~y~~~~~~ltF~el~~~~~-~~g~iiIGi~~~~---~~~~iiNP~~k~~~~~l~~gD~lIVi~~~e 916 (916)
..+.+.. ..+++|.++....+ +.|.++||+++.+ +.++++||+. ++.+.+||.+||||++.
T Consensus 249 ~v~l~s~---~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~iilNP~~---d~~L~~GD~LivIa~~~ 313 (798)
T 3naf_A 249 TEYLSSA---FVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGN---HLKIQEGTLGFFIASDA 313 (798)
T ss_dssp EEECCGG---GTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEEEEESCCT---TCBCCTTCEEEECCBTT
T ss_pred EEECCCC---CCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEECCCC---CCEECCCCEEEEEECCH
T ss_conf 9857811---38979999999988738779999983467889808989999---87879999899996878
No 9
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=1.00 E-value=1 Score=203.25 Aligned_cols=206 Identities=17% Similarity=0.219 Sum_probs=173.5
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 53999903504999999999710028999269999599378999997210024896289999788998888516854544
Q 002491 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (916)
Q Consensus 383 ~HVIIiG~g~~~~~li~eL~~~~~~~~~~~iVVLvd~d~e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~e~L~rA~I~~A~ 462 (916)
+|++|||||+.+..++++|... ++.|+++|.|++.++.. . .++.||++++++|+++++++|+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~~~~~-----------~-~~i~gD~t~~~~L~~agi~~ad 410 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESPVCND-----------H-VVVYGDATVGQTLRQAGIDRAS 410 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCSSCCS-----------S-CEEESCSSSSTHHHHHTTTSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHHHHC-----------C-CEEEECCCCHHHHHHCCCCCCC
T ss_conf 9889989887899999999987------99789997886898626-----------8-7899078998999864924139
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHH
Q ss_conf 89995589987700599999999985104898751999965999988898749994788530999999999997047379
Q 002491 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLA 542 (916)
Q Consensus 463 aVIiltdd~~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~~l~~~Gad~VevI~~~~l~a~lLa~~a~~Pgi~ 542 (916)
.+|+++++ |+.|+.+|+.+|++++ ..++|+++.++++.+.++.+|+|. +|+|+...++.+++.+..+.+.
T Consensus 411 ~vi~~~~~------d~~ni~~~~~ak~l~~--~~~iiar~~~~~~~~~l~~~G~d~--vi~p~~~~~~~i~~~~~~~~~~ 480 (565)
T 4gx0_A 411 GIIVTTND------DSTNIFLTLACRHLHS--HIRIVARANGEENVDQLYAAGADF--VVSNASVGANILGNLLEHKESA 480 (565)
T ss_dssp EEEECCSC------HHHHHHHHHHHHHHCS--SSEEEEEESSTTSHHHHHHHTCSE--EEEHHHHHHHHHHHHHHCC---
T ss_pred EEEEECCC------CHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCE--EECCCHHHHHHHHHHHCCHHHH
T ss_conf 99997798------2679999999998789--987999978877799999769989--9814007999999973564450
Q ss_pred HHHHHHHCCCCCE-EEEECCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECCCCEEEEEEECCCCCC
Q ss_conf 9999883268944-999318975788687674009-99299999993229908858999943418989999993799779
Q 002491 543 QIWEDILGFENAE-FYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (916)
Q Consensus 543 ~vl~~Ll~~~g~e-i~i~~~p~l~G~tl~el~~~~-~~~iviGI~r~~~~g~v~lnP~~d~~I~~GD~LiVIa~~d~~~~ 620 (916)
.+.+ +.+ +.+...+++.|++++|+..+. .++.++||+|. .+|+..++|.++++|++||.|+++|+.+++.+
T Consensus 481 ~~~~------~~~~~~v~~~s~~~Gk~l~el~l~~~~~~~v~aI~R~-~~~~~~~~p~~~~~l~~GD~liv~g~~~~i~~ 553 (565)
T 4gx0_A 481 FLSE------GMAVFRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAP-DRADILISPPPETILAEGARLILIGTSEQEKT 553 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHC------CEEEEEECCCCCCCCCCHHHCCHHHHCCCEEEEEEEC-CCCCEEECCCCCCEECCCCEEEEEECHHHHHH
T ss_conf 3515------7299997289875888889913366529789999967-99955889699878789999999988999999
Q ss_pred CCC
Q ss_conf 899
Q 002491 621 PGP 623 (916)
Q Consensus 621 ~~~ 623 (916)
+..
T Consensus 554 ~~~ 556 (565)
T 4gx0_A 554 FDQ 556 (565)
T ss_dssp ---
T ss_pred HHH
T ss_conf 999
No 10
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=1.00 E-value=1 Score=198.97 Aligned_cols=219 Identities=24% Similarity=0.377 Sum_probs=183.6
Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
Q ss_conf 38652011453999903504999999999710028999269999599378999997210024896289999788998888
Q 002491 374 KGKSEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (916)
Q Consensus 374 ~G~~~v~~k~HVIIiG~g~~~~~li~eL~~~~~~~~~~~iVVLvd~d~e~ie~~l~~~~~~~~~~~V~~i~Gd~~~~e~L 453 (916)
+|+.++..++|++|||||..+..++++|.. .++ |+++|++++.++... .++.++.||+++++.|
T Consensus 1 ~G~~~~~~~~~viI~G~G~~G~~la~~L~~------~g~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l 64 (234)
T 2aef_A 1 MGLIDVAKSRHVVICGWSESTLECLRELRG------SEV-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDL 64 (234)
T ss_dssp ---------CEEEEESCCHHHHHHHHHSTT------SEE-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHH
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHH------CCE-EEEEECCHHHHHHHH---------CCCEEEECCCCCHHHH
T ss_conf 998887878979998997689999999874------992-999978989999986---------6981998488778999
Q ss_pred HCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf 51685454489995589987700599999999985104898751999965999988898749994788530999999999
Q 002491 454 KKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMI 533 (916)
Q Consensus 454 ~rA~I~~A~aVIiltdd~~~~~sD~~ni~~~Lsir~l~p~~~~~IIaev~d~e~~~~l~~~Gad~VevI~~~~l~a~lLa 533 (916)
+++++++|+.+|+++++ |+.|+.+++.++++++ ..++|+++.++++.+.++.+|++. +|.|...++..|+
T Consensus 65 ~~a~i~~ad~vi~~~~~------d~~n~~~~~~a~~~~~--~~~iia~~~~~~~~~~l~~~G~~~--vi~p~~~~a~~l~ 134 (234)
T 2aef_A 65 EKANVRGARAVIVDLES------DSETIHCILGIRKIDE--SVRIIAEAERYENIEQLRMAGADQ--VISPFVISGRLMS 134 (234)
T ss_dssp HHTTCTTCSEEEECCSC------HHHHHHHHHHHHHHCS--SSEEEEECSSGGGHHHHHHHTCSE--EECHHHHHHHHHH
T ss_pred HHCCCCHHCEEEECCCC------CHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCCCE--EECHHHHHHHHHH
T ss_conf 86694032599991798------3889999999998789--986999978876799999779999--9988887999999
Q ss_pred HHHHCCCHHHHHHHHHCCC-C---CEEEEECCCCCCCCCHHHHHHHC-CCEEEEEEEEEECCCEEEECCCCCCEECCCCE
Q ss_conf 9970473799999883268-9---44999318975788687674009-99299999993229908858999943418989
Q 002491 534 QCALQPGLAQIWEDILGFE-N---AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDE 608 (916)
Q Consensus 534 ~~a~~Pgi~~vl~~Ll~~~-g---~ei~i~~~p~l~G~tl~el~~~~-~~~iviGI~r~~~~g~v~lnP~~d~~I~~GD~ 608 (916)
+.+..|++..++++++... + .++.+.+.+++.|++++|+..+. +++.+++|+| +|+..++|.++++|++||.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~V~~~s~~~Gk~l~el~~~~~~~~~vi~i~R---~~~~~~~p~~~~~l~~GD~ 211 (234)
T 2aef_A 135 RSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR---GDELIIDPPRDYSFRAGDI 211 (234)
T ss_dssp HTSSCSHHHHHHHHHHC---CCEEEEEECCTTBTTTTCBHHHHCHHHHHCCEEEEEEE---TTEEEESCCTTCBCCTTCE
T ss_pred HHHCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCEEEEEEEE---CCEEEECCCCCCEECCCCE
T ss_conf 9982912899999996177884699999799996289798993430406929999998---9937848999878879999
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999937997798
Q 002491 609 VLVIAEDDDTYAP 621 (916)
Q Consensus 609 LiVIa~~d~~~~~ 621 (916)
|+++|+.+++.++
T Consensus 212 l~v~g~~~~l~~~ 224 (234)
T 2aef_A 212 ILGIGKPEEIERL 224 (234)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 9999889999999
Done!